BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041145
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 61 PRCDFEFSDYPWPE---RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGD 117
P+ EF+DY + E + AS+P L DY+ G V KYI+FN+ V + D
Sbjct: 80 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED 139
Query: 118 RDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPAN 177
T V+ V T I F+ +V C G F P +P F
Sbjct: 140 SQTFTVT-----------------VQDHTTDTIYSAAFDYVVCCTGHFS-TPYVPEF--- 178
Query: 178 KGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226
+G E FGG++LH+ D+ A E + K V ++G SA D+ +C
Sbjct: 179 EGFEKFGGRILHAHDFRD-----ALE-FKDKTVLLVGSSYSAEDIGSQC 221
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 61 PRCDFEFSDYPWPE---RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGD 117
P+ EF+DY + E + AS+P L DY+ G V KYI+FN+ V + D
Sbjct: 80 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED 139
Query: 118 RDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPAN 177
T V+ V T I F+ +V C G F P +P F
Sbjct: 140 SQTFTVT-----------------VQDHTTDTIYSAAFDYVVCCTGHFS-TPYVPEF--- 178
Query: 178 KGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226
+G E FGG++LH+ D+ A E + K V ++G SA D+ +C
Sbjct: 179 EGFEKFGGRILHAHDFRD-----ALE-FKDKTVLLVGSSYSAEDIGSQC 221
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 61 PRCDFEFSDYPWPE---RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGD 117
P+ EF+DY + E + AS+P L DY+ G V KYI+FN+ V + D
Sbjct: 80 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED 139
Query: 118 RDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPAN 177
T V+ V T I F+ +V C G F P +P F
Sbjct: 140 SQTFTVT-----------------VQDHTTDTIYSAAFDYVVCCTGHFS-TPYVPEF--- 178
Query: 178 KGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226
+G E FGG++LH+ D+ A E + K V ++G SA D+ +C
Sbjct: 179 EGFEKFGGRILHAHDFRD-----ALE-FKDKTVLLVGSSYSAEDIGSQC 221
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 61 PRCDFEFSDYPWPE---RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGD 117
P+ EF+DY + E + AS+P L DY+ G V KYI+FN+ V + D
Sbjct: 80 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED 139
Query: 118 RDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPAN 177
T V+ V T I F+ +V C G F P +P F
Sbjct: 140 SQTFTVT-----------------VQDHTTDTIYSAAFDYVVCCTGHFS-TPYVPEF--- 178
Query: 178 KGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226
+G E FGG++LH+ D+ A E + K V ++G SA D+ +C
Sbjct: 179 EGFEKFGGRILHAHDFRD-----ALE-FKDKTVLLVGSSYSAEDIGSQC 221
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 61 PRCDFEFSDYPWPE---RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGD 117
P+ EF+DY + E + AS+P L DY+ G V KYI+FN+ V + D
Sbjct: 75 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED 134
Query: 118 RDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPAN 177
T V+ V T I F+ +V C G F P +P F
Sbjct: 135 SQTFTVT-----------------VQDHTTDTIYSEEFDYVVCCTGHFS-TPYVPEF--- 173
Query: 178 KGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226
+G E FGG++LH+ D+ A E + K V ++G SA D+ +C
Sbjct: 174 EGFEKFGGRILHAHDFRD-----ALE-FKDKTVLLVGSSSSAEDIGSQC 216
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 61 PRCDFEFSDYPWPE---RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGD 117
P+ EF+DY + E + AS+P L DY+ G V KYI+FN+ V + D
Sbjct: 75 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED 134
Query: 118 RDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPAN 177
T V+ V T I F+ +V C G F P +P F
Sbjct: 135 SQTFTVT-----------------VQDHTTDTIYSEEFDYVVCCTGHFS-TPYVPEF--- 173
Query: 178 KGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226
+G E FGG++LH+ D+ A E + K V ++G SA D+ +C
Sbjct: 174 EGFEKFGGRILHAHDFRD-----ALE-FKDKTVLLVGSSYSAEDIGSQC 216
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 61 PRCDFEFSDYPWPE---RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGD 117
P+ EF+DY + E + AS+P L DY+ G V KYI+FN+ V + D
Sbjct: 75 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED 134
Query: 118 RDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPAN 177
T V+ V T I F+ +V C G F P +P F
Sbjct: 135 SQTFTVT-----------------VQDHTTDTIYSEEFDYVVCCTGHFS-TPYVPEF--- 173
Query: 178 KGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226
+G E FGG++LH+ D+ A E + K V ++G SA D+ +C
Sbjct: 174 EGFEKFGGRILHAHDFRD-----ALEFKD-KTVLLVGSSYSAEDIGSQC 216
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 151/395 (38%), Gaps = 90/395 (22%)
Query: 36 LVFEATNSIGGVWKHCSFNSTKLQTPRCDFEF-------SDYPWPERDDASFPSHVELLD 88
L EA +GG W + +L T + + ++ W E +F S E+L
Sbjct: 36 LGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSE----NFASQPEMLR 91
Query: 89 YLHGYAVHFDVLKYIKFNSKVVEIRHL-GDRDTARVSDTAGEYGSLLKGHPVWEVAVETN 147
Y++ A DV K+ +FN++V R++ DR +WEV ++
Sbjct: 92 YVNRAADAMDVRKHYRFNTRVTAARYVENDR--------------------LWEVTLDNE 131
Query: 148 QAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLE- 206
+ + L+ G RMP KG + F G+ HS + D E A + ++
Sbjct: 132 EVVT---CRFLISATGPL-SASRMPDI---KGIDSFKGESFHSSRWP-TDAEGAPKGVDF 183
Query: 207 -GKKVAIIGYRKSAID---LAVE--------------CAEANQGPNGQPCTMVIRTLHWT 248
GK+V +IG + + +A E C P + +R + T
Sbjct: 184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPT 243
Query: 249 LPSYRIWGLPFFLFY-----------STRSSQF--LHPRPNLGFLRTFLCSILSPMRKAI 295
+ Y F ++ S R + F L+ +P G + +L + K
Sbjct: 244 ILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLL--LNKES 301
Query: 296 SKFIESYLVWKL------PLVKFGLKP-DHPFEEDYASCQMAILPENFFSEAEKGNILF- 347
+KF+ ++ K+ P+V L P DHPF + + N++ + N+
Sbjct: 302 NKFLADFVAKKIRQRVKDPVVAEKLIPKDHPF-----GAKRVPMETNYYETYNRDNVHLV 356
Query: 348 --KRASKWWFWSGGIEFEDKSKLEADVVLLATGYD 380
+ A GI+ D + + DV++ ATG+D
Sbjct: 357 DIREAPIQEVTPEGIKTAD-AAYDLDVIIYATGFD 390
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 37 VFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERD---DASFPSHVELLDYLHGY 93
FEA + +GGVW + + D+ +S P E++ + + E+L YL
Sbjct: 49 AFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHV 108
Query: 94 AVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153
A FD+ + I+F+++V T+ V D G L+ W V + +
Sbjct: 109 ADRFDLRRDIRFDTRV----------TSAVLDEEG-----LR----WTVRTDRGDEVS-- 147
Query: 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAII 213
LV+ G + PAF G + F G ++H+ + + GK+V +I
Sbjct: 148 -ARFLVVAAGPLSN-ANTPAF---DGLDRFTGDIVHTARWPHDGVD-----FTGKRVGVI 197
Query: 214 GYRKSAI 220
G S I
Sbjct: 198 GTGSSGI 204
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 37 VFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERD---DASFPSHVELLDYLHGY 93
FEA + +GGVW + + D+ +S P E++ + + E+L YL
Sbjct: 49 AFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHV 108
Query: 94 AVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153
A FD+ + I+F+++V T+ V D G L+ W V + +
Sbjct: 109 ADRFDLRRDIRFDTRV----------TSAVLDEEG-----LR----WTVRTDRGDEVS-- 147
Query: 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAII 213
LV+ G + PAF G + F G ++H+ + + GK+V +I
Sbjct: 148 -ARFLVVAAGPLSN-ANTPAF---DGLDRFTGDIVHTARWPHDGVD-----FTGKRVGVI 197
Query: 214 GYRKSAI 220
G S I
Sbjct: 198 GTGSSGI 204
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 37 VFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERD---DASFPSHVELLDYLHGY 93
FEA + +GGVW + + D+ +S P E++ + + E+L YL
Sbjct: 49 AFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHV 108
Query: 94 AVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153
A FD+ + I+F+++V T+ V D G L+ W V + +
Sbjct: 109 ADRFDLRRDIRFDTRV----------TSAVLDEEG-----LR----WTVRTDRGDEVS-- 147
Query: 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAII 213
LV+ G + PAF G + F G ++H+ + + GK+V +I
Sbjct: 148 -ARFLVVAAGPLSN-ANTPAF---DGLDRFTGDIVHTARWPHDGVD-----FTGKRVGVI 197
Query: 214 GYRKSAI 220
G S I
Sbjct: 198 GTGSSGI 204
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 91/239 (38%), Gaps = 61/239 (25%)
Query: 37 VFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDY------------PWPERDDASFPSHV 84
V E +GGVW + RCD E +Y W ER + S
Sbjct: 44 VIETAGDVGGVWYWNRYPGA-----RCDIESIEYCYSFSEEVLQEWNWTER----YASQP 94
Query: 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAV 144
E+L Y++ A FD+ I F++ V TA D A W V
Sbjct: 95 EILRYINFVADKFDLRSGITFHTTV----------TAAAFDEATN---------TWTVDT 135
Query: 145 ETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATEL 204
I+ L+M G+ +P++P FP G + F G + H+ ++ +
Sbjct: 136 NHGDRIR---ARYLIMASGQL-SVPQLPNFP---GLKDFAGNLYHTGNWPHEPVD----- 183
Query: 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVI--RTLHWTLPSYRIWGLPFFL 261
G++V +IG S I ++ + A+ Q + + RT H+ +P+ P FL
Sbjct: 184 FSGQRVGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTPHFAVPARNAPLDPEFL 235
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 90/239 (37%), Gaps = 61/239 (25%)
Query: 37 VFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDY------------PWPERDDASFPSHV 84
V E +GGVW + RCD E +Y W ER + S
Sbjct: 44 VIETAGDVGGVWYWNRYPGA-----RCDIESIEYCYSFSEEVLQEWNWTER----YASQP 94
Query: 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAV 144
E+L Y++ A FD+ I F++ V TA D A W V
Sbjct: 95 EILRYINFVADKFDLRSGITFHTTV----------TAAAFDEATN---------TWTVDT 135
Query: 145 ETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATEL 204
I+ L+M G+ +P++P FP K F G + H+ ++ +
Sbjct: 136 NHGDRIR---ARYLIMASGQL-SVPQLPNFPGLKD---FAGNLYHTGNWPHEPVD----- 183
Query: 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVI--RTLHWTLPSYRIWGLPFFL 261
G++V +IG S I ++ + A+ Q + + RT H+ +P+ P FL
Sbjct: 184 FSGQRVGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTPHFAVPARNAPLDPEFL 235
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 51/234 (21%)
Query: 37 VFEATNSIGGVW-------KHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89
V E +GGVW C+ S + + ++ W ER + S E+L Y
Sbjct: 44 VIETAGDVGGVWYWNRYPGARCAIESIEYCYSFSEEVLQEWNWTER----YASQPEILRY 99
Query: 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA 149
++ A FD+ I F++ V TA D A W V
Sbjct: 100 INFVADKFDLRSGITFHTTV----------TAAAFDEATN---------TWTVDTNHGDR 140
Query: 150 IQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKK 209
I+ L+M G+ +P++P FP K F G + H+ ++ + G++
Sbjct: 141 IR---ARYLIMASGQL-SVPQLPNFPGLKD---FAGNLYHTGNWPHEPVD-----FSGQR 188
Query: 210 VAIIGYRKSAIDLAVECAEANQGPNGQPCTMVI--RTLHWTLPSYRIWGLPFFL 261
V +IG S I ++ + A+ Q + + RT H+ +P+ P FL
Sbjct: 189 VGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTPHFAVPARNAPLDPEFL 235
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 90/239 (37%), Gaps = 61/239 (25%)
Query: 37 VFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDY------------PWPERDDASFPSHV 84
V E +GGVW + RCD E +Y W ER + S
Sbjct: 44 VIETAGDVGGVWYWNRYPGA-----RCDIESIEYCYSFSEEVLQEWNWTER----YASQP 94
Query: 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAV 144
E+L Y++ A FD+ I F++ V TA D A W V
Sbjct: 95 EILRYINFVADKFDLRSGITFHTTV----------TAAAFDEATN---------TWTVDT 135
Query: 145 ETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATEL 204
I+ L+M G+ +P++P FP K F G + H+ ++ +
Sbjct: 136 NHGDRIR---ARYLIMASGQL-SVPQLPNFPGLKD---FAGNLYHTGNWPHEPVD----- 183
Query: 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVI--RTLHWTLPSYRIWGLPFFL 261
G++V +IG S I ++ + A+ Q + + RT H+ +P+ P FL
Sbjct: 184 FSGQRVGVIGTGSSGIQVSPQIAK-------QAAELFVFQRTPHFAVPARNAPLDPEFL 235
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 42/194 (21%)
Query: 36 LVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDYLHGYAV 95
++ +A S GG W+H +++S L +P +P P +P+ E+L YL Y
Sbjct: 30 VILDAEASPGGAWQH-AWHSLHLFSPAGWSSIPGWPMPA-SQGPYPARAEVLAYLAQYEQ 87
Query: 96 HF--DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153
+ VL+ I+ V + H G+R + V QW
Sbjct: 88 KYALPVLRPIR----VQRVSHFGER-----------------------LRVVARDGRQWL 120
Query: 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAII 213
++ G +G+ P +G E F G LHS YS G +VAII
Sbjct: 121 A-RAVISATGTWGEA----YTPEYQGLESFAGIQLHSAHYST------PAPFAGMRVAII 169
Query: 214 GYRKSAIDLAVECA 227
G S + E +
Sbjct: 170 GGGNSGAQILAEVS 183
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 40/216 (18%)
Query: 38 FEATNSIGGVWKHCSFNSTKLQTPRCDFEFS---DYPWPERDDASFPSHVELLDYLHGYA 94
F+ + GG W + T + FS D ++ + E+L+YL
Sbjct: 71 FDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVV 130
Query: 95 VHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYG 154
FD+ ++ KF ++V +L D + +WEV + + Y
Sbjct: 131 DRFDLRRHFKFGTEVTSALYLDDEN-------------------LWEVTTDHGEV---YR 168
Query: 155 FELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIG 214
+ +V +G I FP G + F G+ +H+ + + + L G++V +IG
Sbjct: 169 AKYVVNAVGLLSAI----NFPNLPGLDTFEGETIHTAAWPE------GKSLAGRRVGVIG 218
Query: 215 YRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWTLP 250
+ + A P + T+ +RT +++P
Sbjct: 219 TGSTGQQVITSLA-----PEVEHLTVFVRTPQYSVP 249
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 40/216 (18%)
Query: 38 FEATNSIGGVWKHCSFNSTKLQTPRCDFEFS---DYPWPERDDASFPSHVELLDYLHGYA 94
F+ + GG W + T + FS D ++ + E+L+YL
Sbjct: 38 FDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVV 97
Query: 95 VHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYG 154
FD+ ++ KF ++V +L D + +WEV + + Y
Sbjct: 98 DRFDLRRHFKFGTEVTSALYLDDEN-------------------LWEVTTDHGEV---YR 135
Query: 155 FELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIG 214
+ +V +G I FP G + F G+ +H+ + + + L G++V +IG
Sbjct: 136 AKYVVNAVGLLSAI----NFPNLPGLDTFEGETIHTAAWPE------GKSLAGRRVGVIG 185
Query: 215 YRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWTLP 250
+ + A P + T+ +RT +++P
Sbjct: 186 TGSTGQQVITSLA-----PEVEHLTVFVRTPQYSVP 216
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 371 DVVLLATGYDGKKKLQSI--LPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS 428
D V+ TGY S+ L P + L+ D S + +Y+ + P +AFVG V
Sbjct: 282 DRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV 341
Query: 429 NLQIAEIRCKWLARLADQKFKLPAVEKMLE 458
++ + +LAR+ + KLP+ E+ L+
Sbjct: 342 PFPTSQAQAAFLARVWSGRLKLPSKEEQLK 371
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 371 DVVLLATGYDGKKKLQSI--LPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS 428
D V+ TGY S+ L P + L+ D S + +Y+ + P +AFVG V
Sbjct: 284 DRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV 343
Query: 429 NLQIAEIRCKWLARLADQKFKLPAVEKMLE 458
++ + +LAR+ + KLP+ E+ L+
Sbjct: 344 PFPTSQAQAAFLARVWSGRLKLPSKEEQLK 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,741,626
Number of Sequences: 62578
Number of extensions: 657834
Number of successful extensions: 1514
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 35
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)