Query 041145
Match_columns 522
No_of_seqs 348 out of 3556
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 3.2E-77 6.9E-82 620.3 25.0 450 12-520 2-475 (531)
2 PLN02172 flavin-containing mon 100.0 4.5E-60 9.7E-65 486.4 35.3 372 1-500 1-405 (461)
3 KOG1399 Flavin-containing mono 100.0 1.1E-50 2.3E-55 408.3 27.7 383 11-520 6-408 (448)
4 COG2072 TrkA Predicted flavopr 100.0 8.2E-44 1.8E-48 364.7 32.7 392 9-447 6-413 (443)
5 TIGR01292 TRX_reduct thioredox 100.0 1.3E-29 2.9E-34 249.9 28.0 282 12-445 1-297 (300)
6 PF13738 Pyr_redox_3: Pyridine 100.0 2.8E-31 6.1E-36 246.5 12.6 190 15-248 1-203 (203)
7 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.5E-29 3.3E-34 256.4 21.9 316 9-446 2-334 (454)
8 COG1252 Ndh NADH dehydrogenase 100.0 2.5E-29 5.5E-34 248.3 20.6 293 11-449 3-332 (405)
9 PRK10262 thioredoxin reductase 100.0 2.8E-28 6.1E-33 242.5 25.0 285 11-444 6-310 (321)
10 TIGR01421 gluta_reduc_1 glutat 100.0 4.2E-28 9.1E-33 251.2 23.2 300 11-447 2-328 (450)
11 PLN02507 glutathione reductase 100.0 1.1E-27 2.3E-32 250.5 24.9 309 11-447 25-363 (499)
12 PRK05249 soluble pyridine nucl 100.0 2.4E-27 5.1E-32 247.7 25.8 307 9-448 3-336 (461)
13 PRK06116 glutathione reductase 100.0 2.8E-27 6.1E-32 246.1 24.0 299 11-447 4-328 (450)
14 PTZ00318 NADH dehydrogenase-li 100.0 2.3E-27 5E-32 244.2 21.5 309 1-448 1-347 (424)
15 PRK15317 alkyl hydroperoxide r 100.0 1.1E-26 2.3E-31 244.9 26.6 281 11-444 211-507 (517)
16 PRK08010 pyridine nucleotide-d 100.0 6E-27 1.3E-31 243.0 23.6 303 9-447 1-317 (441)
17 PRK06416 dihydrolipoamide dehy 100.0 1.4E-26 3.1E-31 241.7 26.2 304 11-448 4-335 (462)
18 PRK06370 mercuric reductase; V 100.0 8.4E-27 1.8E-31 243.3 23.8 305 8-447 2-334 (463)
19 PRK13512 coenzyme A disulfide 100.0 6.1E-27 1.3E-31 242.1 22.5 290 13-447 3-312 (438)
20 PRK07818 dihydrolipoamide dehy 100.0 1.4E-26 3E-31 241.7 25.3 317 9-448 2-337 (466)
21 TIGR01424 gluta_reduc_2 glutat 100.0 4.1E-27 8.9E-32 244.1 20.4 301 11-447 2-326 (446)
22 PRK14694 putative mercuric red 99.9 2.7E-26 5.9E-31 239.4 25.7 308 11-448 6-336 (468)
23 PRK07251 pyridine nucleotide-d 99.9 2.6E-26 5.6E-31 238.0 25.4 296 9-447 1-316 (438)
24 TIGR01423 trypano_reduc trypan 99.9 9.5E-27 2E-31 241.9 22.0 319 11-447 3-351 (486)
25 PRK07846 mycothione reductase; 99.9 2.5E-26 5.5E-31 237.8 23.9 308 12-447 2-325 (451)
26 PRK14727 putative mercuric red 99.9 2E-26 4.4E-31 240.7 23.3 311 11-447 16-346 (479)
27 TIGR02053 MerA mercuric reduct 99.9 1.2E-26 2.7E-31 242.1 20.6 302 12-447 1-329 (463)
28 PTZ00052 thioredoxin reductase 99.9 1.5E-26 3.2E-31 242.2 20.5 310 11-447 5-341 (499)
29 PRK06467 dihydrolipoamide dehy 99.9 6.7E-26 1.4E-30 236.2 25.2 306 10-448 3-338 (471)
30 TIGR03140 AhpF alkyl hydropero 99.9 6E-26 1.3E-30 238.9 24.8 282 11-445 212-509 (515)
31 PRK13748 putative mercuric red 99.9 6.8E-26 1.5E-30 242.4 25.2 307 11-447 98-428 (561)
32 PRK06115 dihydrolipoamide dehy 99.9 2.1E-26 4.5E-31 239.8 20.6 312 9-448 1-339 (466)
33 PRK06292 dihydrolipoamide dehy 99.9 2.5E-26 5.3E-31 239.9 19.9 310 9-447 1-331 (460)
34 PRK04965 NADH:flavorubredoxin 99.9 9.8E-26 2.1E-30 229.2 23.3 286 12-448 3-303 (377)
35 PRK09564 coenzyme A disulfide 99.9 1E-25 2.2E-30 234.5 23.4 295 13-448 2-318 (444)
36 COG0492 TrxB Thioredoxin reduc 99.9 6.4E-25 1.4E-29 212.5 26.4 262 11-427 3-277 (305)
37 PTZ00058 glutathione reductase 99.9 2.4E-25 5.2E-30 233.7 24.6 313 11-447 48-432 (561)
38 TIGR03143 AhpF_homolog putativ 99.9 5.4E-25 1.2E-29 233.4 26.7 281 11-444 4-304 (555)
39 PLN02546 glutathione reductase 99.9 2.7E-26 5.9E-31 241.0 16.6 301 11-447 79-413 (558)
40 TIGR01438 TGR thioredoxin and 99.9 1.6E-25 3.4E-30 233.3 22.0 315 11-447 2-344 (484)
41 TIGR03452 mycothione_red mycot 99.9 2E-25 4.3E-30 231.4 20.9 309 11-447 2-328 (452)
42 PRK14989 nitrite reductase sub 99.9 2.2E-25 4.7E-30 244.1 22.1 291 11-448 3-311 (847)
43 PRK07845 flavoprotein disulfid 99.9 1.1E-24 2.4E-29 226.9 25.7 311 13-448 3-338 (466)
44 PRK05976 dihydrolipoamide dehy 99.9 4.5E-25 9.8E-30 230.7 22.1 312 11-448 4-344 (472)
45 PRK06912 acoL dihydrolipoamide 99.9 1.2E-24 2.5E-29 226.5 24.7 308 13-447 2-330 (458)
46 PRK06327 dihydrolipoamide dehy 99.9 1.1E-24 2.4E-29 227.6 24.5 309 11-448 4-348 (475)
47 PF13434 K_oxygenase: L-lysine 99.9 3.1E-25 6.7E-30 219.7 19.1 203 11-247 2-227 (341)
48 PRK09754 phenylpropionate diox 99.9 9.5E-25 2.1E-29 223.2 23.2 292 9-448 1-310 (396)
49 TIGR01350 lipoamide_DH dihydro 99.9 1.9E-24 4.2E-29 225.8 25.3 305 12-448 2-333 (461)
50 PTZ00153 lipoamide dehydrogena 99.9 4.5E-25 9.7E-30 234.5 20.2 317 11-447 116-495 (659)
51 KOG0405 Pyridine nucleotide-di 99.9 2.2E-24 4.7E-29 201.1 21.6 315 11-446 20-349 (478)
52 TIGR03169 Nterm_to_SelD pyridi 99.9 1.2E-24 2.5E-29 220.6 19.2 289 13-446 1-308 (364)
53 TIGR02374 nitri_red_nirB nitri 99.9 1.8E-24 3.8E-29 237.4 22.0 287 14-448 1-302 (785)
54 PRK09853 putative selenate red 99.9 6E-24 1.3E-28 231.1 23.2 296 11-449 539-842 (1019)
55 KOG2495 NADH-dehydrogenase (ub 99.9 4.9E-24 1.1E-28 204.7 19.7 304 11-448 55-396 (491)
56 PRK11749 dihydropyrimidine deh 99.9 3.9E-24 8.4E-29 222.6 20.6 279 11-445 140-448 (457)
57 TIGR01316 gltA glutamate synth 99.9 1E-23 2.3E-28 218.2 20.2 164 11-246 133-306 (449)
58 PRK12831 putative oxidoreducta 99.9 1.3E-23 2.8E-28 217.8 20.5 167 11-246 140-315 (464)
59 PRK12779 putative bifunctional 99.9 5.7E-23 1.2E-27 227.2 21.9 302 11-451 306-629 (944)
60 TIGR03315 Se_ygfK putative sel 99.9 2.6E-22 5.7E-27 219.6 22.7 298 11-450 537-841 (1012)
61 PRK12778 putative bifunctional 99.9 2.6E-22 5.6E-27 220.6 21.3 166 11-246 431-605 (752)
62 COG3486 IucD Lysine/ornithine 99.9 2.1E-21 4.6E-26 186.5 24.7 199 8-248 2-227 (436)
63 KOG1335 Dihydrolipoamide dehyd 99.9 2.3E-22 5E-27 190.0 17.6 318 11-448 39-378 (506)
64 PRK12770 putative glutamate sy 99.9 1.1E-21 2.3E-26 197.5 22.2 179 11-246 18-207 (352)
65 PRK12814 putative NADPH-depend 99.9 6.4E-22 1.4E-26 213.2 21.5 164 11-246 193-358 (652)
66 PRK12775 putative trifunctiona 99.9 2E-21 4.4E-26 216.8 21.4 167 11-246 430-606 (1006)
67 PRK12810 gltD glutamate syntha 99.9 6.4E-21 1.4E-25 198.8 21.3 162 11-243 143-313 (471)
68 PRK12769 putative oxidoreducta 99.9 8.1E-21 1.7E-25 205.6 21.6 166 11-247 327-504 (654)
69 TIGR03385 CoA_CoA_reduc CoA-di 99.9 8.8E-21 1.9E-25 196.2 20.7 237 91-447 51-304 (427)
70 TIGR01318 gltD_gamma_fam gluta 99.9 1.5E-20 3.2E-25 195.4 21.9 169 11-250 141-321 (467)
71 KOG4716 Thioredoxin reductase 99.8 1.9E-19 4.1E-24 167.6 21.4 319 11-445 19-363 (503)
72 KOG1336 Monodehydroascorbate/f 99.8 4.2E-20 9.2E-25 181.2 17.5 265 11-426 74-351 (478)
73 TIGR01372 soxA sarcosine oxida 99.8 2.7E-19 5.9E-24 201.1 24.6 282 11-444 163-467 (985)
74 PRK12771 putative glutamate sy 99.8 1.4E-19 2.9E-24 193.1 20.1 163 11-246 137-302 (564)
75 COG1251 NirB NAD(P)H-nitrite r 99.8 2.7E-19 5.9E-24 183.4 21.2 291 11-449 3-308 (793)
76 PRK13984 putative oxidoreducta 99.8 1.4E-19 3.1E-24 194.8 20.0 165 11-242 283-454 (604)
77 PRK12809 putative oxidoreducta 99.8 2.2E-19 4.7E-24 193.6 20.8 165 11-246 310-486 (639)
78 PLN02852 ferredoxin-NADP+ redu 99.8 6.9E-18 1.5E-22 173.5 24.2 170 11-246 26-221 (491)
79 TIGR01317 GOGAT_sm_gam glutama 99.8 3.3E-18 7.1E-23 178.6 21.5 165 11-246 143-318 (485)
80 KOG0404 Thioredoxin reductase 99.8 8.3E-18 1.8E-22 148.1 19.9 179 12-246 9-191 (322)
81 COG4529 Uncharacterized protei 99.8 6E-17 1.3E-21 160.5 26.1 387 12-445 2-459 (474)
82 PRK09897 hypothetical protein; 99.8 1.1E-16 2.3E-21 166.7 25.9 196 12-247 2-247 (534)
83 COG3634 AhpF Alkyl hydroperoxi 99.7 6.4E-16 1.4E-20 144.8 19.5 173 11-243 211-385 (520)
84 PTZ00188 adrenodoxin reductase 99.6 2.9E-14 6.2E-19 144.4 23.7 40 11-50 39-81 (506)
85 KOG1800 Ferredoxin/adrenodoxin 99.6 8.6E-14 1.9E-18 132.5 17.1 166 11-245 20-214 (468)
86 COG0446 HcaD Uncharacterized N 99.6 3.3E-13 7.1E-18 139.3 22.0 287 14-447 1-310 (415)
87 COG0493 GltD NADPH-dependent g 99.6 1.7E-14 3.8E-19 147.0 11.7 162 11-243 123-294 (457)
88 PRK06567 putative bifunctional 99.5 1.3E-13 2.7E-18 149.1 17.6 36 11-46 383-420 (1028)
89 KOG0399 Glutamate synthase [Am 99.5 3.5E-13 7.5E-18 142.4 16.9 156 11-231 1785-1948(2142)
90 KOG1346 Programmed cell death 99.3 2.5E-11 5.4E-16 116.8 13.6 190 141-425 289-487 (659)
91 PF13454 NAD_binding_9: FAD-NA 99.3 3E-11 6.5E-16 106.6 12.3 126 15-164 1-155 (156)
92 COG2081 Predicted flavoprotein 99.3 2.4E-11 5.1E-16 118.1 11.3 135 10-171 2-171 (408)
93 COG1148 HdrA Heterodisulfide r 99.2 1.7E-09 3.6E-14 106.6 19.5 38 11-48 124-163 (622)
94 KOG2755 Oxidoreductase [Genera 99.2 1.2E-09 2.7E-14 99.3 15.2 87 139-246 80-166 (334)
95 PF03486 HI0933_like: HI0933-l 99.1 1.2E-10 2.5E-15 118.2 7.9 133 12-170 1-169 (409)
96 PF07992 Pyr_redox_2: Pyridine 99.1 3.5E-11 7.5E-16 111.2 3.2 151 13-214 1-159 (201)
97 TIGR02032 GG-red-SF geranylger 99.0 2E-09 4.4E-14 105.6 11.1 129 12-166 1-148 (295)
98 PRK06847 hypothetical protein; 99.0 7.6E-09 1.6E-13 105.4 15.6 129 12-166 5-163 (375)
99 PRK06834 hypothetical protein; 99.0 5.9E-09 1.3E-13 109.3 14.7 132 9-167 1-157 (488)
100 PRK08244 hypothetical protein; 99.0 8E-09 1.7E-13 109.1 15.0 133 11-166 2-159 (493)
101 PRK06183 mhpA 3-(3-hydroxyphen 99.0 1.6E-08 3.4E-13 107.9 16.4 141 1-166 1-174 (538)
102 TIGR00292 thiazole biosynthesi 98.9 7.1E-09 1.5E-13 98.7 11.6 102 11-114 21-128 (254)
103 PRK06184 hypothetical protein; 98.9 1.6E-08 3.4E-13 107.1 15.3 135 9-166 1-168 (502)
104 TIGR02023 BchP-ChlP geranylger 98.9 1.4E-08 3.1E-13 103.7 13.4 128 12-166 1-155 (388)
105 PRK08013 oxidoreductase; Provi 98.9 1.1E-08 2.4E-13 105.0 12.5 130 11-166 3-168 (400)
106 COG3380 Predicted NAD/FAD-depe 98.9 5.3E-09 1.2E-13 96.0 8.6 121 13-163 3-157 (331)
107 PRK07494 2-octaprenyl-6-methox 98.9 1.2E-08 2.6E-13 104.5 12.3 132 9-166 5-167 (388)
108 PRK07364 2-octaprenyl-6-methox 98.9 1.2E-08 2.5E-13 105.6 12.1 133 11-166 18-181 (415)
109 PRK04176 ribulose-1,5-biphosph 98.9 1.4E-08 3E-13 97.0 11.5 135 11-166 25-173 (257)
110 TIGR01790 carotene-cycl lycope 98.9 2E-08 4.3E-13 102.9 13.4 127 13-165 1-140 (388)
111 PRK08132 FAD-dependent oxidore 98.9 4.1E-08 8.9E-13 105.0 15.7 133 11-166 23-185 (547)
112 PRK08773 2-octaprenyl-3-methyl 98.9 2.1E-08 4.6E-13 102.7 12.8 130 11-166 6-169 (392)
113 PRK06753 hypothetical protein; 98.8 2.6E-08 5.5E-13 101.4 12.8 126 13-166 2-152 (373)
114 PRK09126 hypothetical protein; 98.8 3.8E-08 8.2E-13 100.9 13.1 35 8-43 1-37 (392)
115 PLN02463 lycopene beta cyclase 98.8 3.8E-08 8.2E-13 101.5 12.7 128 11-166 28-169 (447)
116 PRK05714 2-octaprenyl-3-methyl 98.8 3.4E-08 7.4E-13 101.7 12.2 130 11-166 2-168 (405)
117 COG0644 FixC Dehydrogenases (f 98.8 3.5E-08 7.5E-13 101.1 11.8 131 11-166 3-152 (396)
118 PRK08849 2-octaprenyl-3-methyl 98.8 4.9E-08 1.1E-12 99.7 12.6 34 9-42 1-36 (384)
119 PRK10157 putative oxidoreducta 98.8 6.1E-08 1.3E-12 100.2 13.2 129 11-165 5-163 (428)
120 COG1635 THI4 Ribulose 1,5-bisp 98.8 2.6E-08 5.6E-13 88.8 8.6 138 12-165 31-177 (262)
121 PRK06185 hypothetical protein; 98.8 6.1E-08 1.3E-12 99.9 12.9 133 11-166 6-169 (407)
122 TIGR01988 Ubi-OHases Ubiquinon 98.8 4.2E-08 9.1E-13 100.3 11.6 128 13-166 1-163 (385)
123 PRK08163 salicylate hydroxylas 98.8 3.9E-08 8.4E-13 101.0 11.4 130 11-166 4-166 (396)
124 TIGR02028 ChlP geranylgeranyl 98.8 9.4E-08 2E-12 97.9 14.1 132 13-166 2-160 (398)
125 PRK08850 2-octaprenyl-6-methox 98.8 4.9E-08 1.1E-12 100.5 12.1 33 9-41 2-36 (405)
126 PRK07190 hypothetical protein; 98.8 9E-08 1.9E-12 100.3 14.2 130 11-166 5-165 (487)
127 PRK07045 putative monooxygenas 98.8 9.6E-08 2.1E-12 97.8 13.9 132 11-166 5-165 (388)
128 PRK06126 hypothetical protein; 98.8 1.7E-07 3.8E-12 100.2 16.3 133 11-166 7-188 (545)
129 PRK11445 putative oxidoreducta 98.8 1.1E-07 2.5E-12 95.7 14.1 130 12-166 2-157 (351)
130 PRK07236 hypothetical protein; 98.8 4.8E-08 1E-12 99.8 11.4 128 11-166 6-154 (386)
131 PF01494 FAD_binding_3: FAD bi 98.8 2E-08 4.3E-13 101.2 8.4 132 12-166 2-172 (356)
132 PRK06996 hypothetical protein; 98.7 5.4E-08 1.2E-12 99.9 11.4 139 1-164 1-172 (398)
133 PRK07333 2-octaprenyl-6-methox 98.7 8.2E-08 1.8E-12 98.8 12.7 129 12-166 2-167 (403)
134 PRK07588 hypothetical protein; 98.7 8.1E-08 1.8E-12 98.4 12.2 127 13-166 2-158 (391)
135 PRK07608 ubiquinone biosynthes 98.7 9.6E-08 2.1E-12 97.8 12.5 129 11-166 5-167 (388)
136 TIGR00275 flavoprotein, HI0933 98.7 5.8E-08 1.3E-12 99.4 10.6 127 15-169 1-162 (400)
137 PRK08020 ubiF 2-octaprenyl-3-m 98.7 9.1E-08 2E-12 98.0 12.0 130 11-166 5-169 (391)
138 COG0654 UbiH 2-polyprenyl-6-me 98.7 1.2E-07 2.7E-12 96.8 12.8 130 11-166 2-162 (387)
139 PRK08243 4-hydroxybenzoate 3-m 98.7 1.7E-07 3.7E-12 96.0 13.7 134 11-166 2-163 (392)
140 PRK05732 2-octaprenyl-6-methox 98.7 8.6E-08 1.9E-12 98.4 11.4 131 10-166 2-169 (395)
141 PRK10015 oxidoreductase; Provi 98.7 1.4E-07 3.1E-12 97.4 12.7 129 11-165 5-163 (429)
142 TIGR03219 salicylate_mono sali 98.7 1.3E-07 2.8E-12 97.7 12.1 126 13-166 2-159 (414)
143 PF05834 Lycopene_cycl: Lycope 98.7 1.7E-07 3.7E-12 95.1 12.6 126 13-165 1-141 (374)
144 TIGR01984 UbiH 2-polyprenyl-6- 98.7 9.7E-08 2.1E-12 97.5 10.8 128 13-166 1-162 (382)
145 PRK06475 salicylate hydroxylas 98.7 2.4E-07 5.2E-12 95.2 13.2 132 12-166 3-167 (400)
146 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 2.5E-07 5.4E-12 94.6 13.1 33 11-43 2-36 (390)
147 PLN00093 geranylgeranyl diphos 98.7 3.5E-07 7.5E-12 94.8 14.2 132 11-166 39-199 (450)
148 PRK06617 2-octaprenyl-6-methox 98.6 2.5E-07 5.5E-12 94.1 12.5 124 13-166 3-160 (374)
149 PRK05868 hypothetical protein; 98.6 4.7E-07 1E-11 92.0 14.1 32 13-44 3-36 (372)
150 PF13450 NAD_binding_8: NAD(P) 98.6 3.1E-08 6.7E-13 73.6 3.7 46 16-61 1-48 (68)
151 TIGR01989 COQ6 Ubiquinone bios 98.6 3.3E-07 7.2E-12 95.2 12.4 135 12-166 1-183 (437)
152 PLN02697 lycopene epsilon cycl 98.6 3.8E-07 8.2E-12 95.7 12.5 127 11-166 108-248 (529)
153 PRK07538 hypothetical protein; 98.6 7E-07 1.5E-11 92.2 14.4 131 13-166 2-165 (413)
154 PF00070 Pyr_redox: Pyridine n 98.6 6.3E-08 1.4E-12 74.9 4.7 35 209-248 1-35 (80)
155 PF01266 DAO: FAD dependent ox 98.6 1.1E-07 2.4E-12 95.8 7.6 58 81-165 144-202 (358)
156 PRK05329 anaerobic glycerol-3- 98.6 1.4E-06 3.1E-11 88.8 15.4 32 11-42 2-35 (422)
157 PF12831 FAD_oxidored: FAD dep 98.6 3.6E-08 7.7E-13 101.9 3.4 131 13-165 1-149 (428)
158 PF01946 Thi4: Thi4 family; PD 98.6 5E-07 1.1E-11 81.3 10.1 102 11-114 17-124 (230)
159 COG2907 Predicted NAD/FAD-bind 98.5 4.3E-07 9.4E-12 86.4 9.5 38 12-49 9-47 (447)
160 PF00070 Pyr_redox: Pyridine n 98.5 1.6E-06 3.5E-11 66.9 10.5 66 13-114 1-68 (80)
161 PRK11259 solA N-methyltryptoph 98.5 1.1E-06 2.4E-11 89.5 12.4 33 11-43 3-37 (376)
162 TIGR01813 flavo_cyto_c flavocy 98.5 3.1E-06 6.8E-11 88.1 16.0 131 13-165 1-191 (439)
163 PRK05192 tRNA uridine 5-carbox 98.5 1.5E-06 3.2E-11 91.5 13.0 37 10-46 3-42 (618)
164 PRK11728 hydroxyglutarate oxid 98.5 1.1E-06 2.4E-11 90.0 11.8 34 12-45 3-40 (393)
165 TIGR01789 lycopene_cycl lycope 98.5 1.2E-06 2.5E-11 88.7 11.6 139 13-190 1-156 (370)
166 PRK08294 phenol 2-monooxygenas 98.5 3.7E-06 8E-11 91.0 16.0 138 11-166 32-210 (634)
167 PLN02661 Putative thiazole syn 98.5 8E-07 1.7E-11 87.2 9.6 137 11-165 92-243 (357)
168 TIGR01377 soxA_mon sarcosine o 98.4 1.9E-06 4.1E-11 87.9 12.5 32 12-43 1-34 (380)
169 PRK12266 glpD glycerol-3-phosp 98.4 2.8E-06 6E-11 89.8 13.9 37 11-47 6-44 (508)
170 COG0579 Predicted dehydrogenas 98.4 1.4E-06 3.1E-11 87.9 11.0 35 11-45 3-41 (429)
171 PRK07208 hypothetical protein; 98.4 5.3E-07 1.2E-11 95.0 7.6 43 8-50 1-45 (479)
172 PRK13369 glycerol-3-phosphate 98.4 3.7E-06 8.1E-11 88.8 13.9 36 11-46 6-43 (502)
173 PRK12409 D-amino acid dehydrog 98.4 2.7E-06 5.9E-11 87.8 12.1 32 13-44 3-36 (410)
174 PRK08274 tricarballylate dehyd 98.4 4.7E-06 1E-10 87.5 13.8 37 10-46 3-43 (466)
175 KOG3851 Sulfide:quinone oxidor 98.4 1.7E-05 3.7E-10 74.8 15.4 33 11-43 39-75 (446)
176 TIGR01350 lipoamide_DH dihydro 98.4 9.4E-06 2E-10 85.1 15.6 101 11-172 170-272 (461)
177 PRK05976 dihydrolipoamide dehy 98.4 1.6E-05 3.4E-10 83.6 17.2 103 11-172 180-284 (472)
178 COG1249 Lpd Pyruvate/2-oxoglut 98.3 7.2E-06 1.6E-10 84.2 13.5 103 11-174 173-277 (454)
179 PRK04965 NADH:flavorubredoxin 98.3 7.1E-06 1.5E-10 83.6 13.5 96 11-165 141-238 (377)
180 PRK06481 fumarate reductase fl 98.3 1.4E-05 3E-10 84.6 15.7 37 11-47 61-99 (506)
181 PRK06416 dihydrolipoamide dehy 98.3 2.4E-05 5.2E-10 82.0 17.4 102 11-172 172-275 (462)
182 KOG0029 Amine oxidase [Seconda 98.3 5.8E-07 1.3E-11 93.4 4.8 41 9-49 13-55 (501)
183 PRK06175 L-aspartate oxidase; 98.3 1.2E-05 2.5E-10 83.3 13.7 36 11-46 4-40 (433)
184 PRK07121 hypothetical protein; 98.3 1.4E-05 3.1E-10 84.3 14.4 37 11-47 20-58 (492)
185 PF00890 FAD_binding_2: FAD bi 98.3 1E-05 2.2E-10 83.7 13.0 35 13-47 1-37 (417)
186 PRK13977 myosin-cross-reactive 98.3 1.9E-05 4E-10 82.5 14.6 39 11-49 22-66 (576)
187 TIGR02053 MerA mercuric reduct 98.2 1.5E-05 3.3E-10 83.6 14.1 102 11-172 166-269 (463)
188 PLN02927 antheraxanthin epoxid 98.2 8E-06 1.7E-10 87.5 11.9 32 11-42 81-114 (668)
189 PRK06912 acoL dihydrolipoamide 98.2 3.4E-05 7.4E-10 80.7 16.5 100 11-172 170-271 (458)
190 PRK12839 hypothetical protein; 98.2 3.2E-05 6.9E-10 82.7 16.2 46 1-49 1-48 (572)
191 PRK12835 3-ketosteroid-delta-1 98.2 4.1E-05 8.8E-10 82.2 16.9 47 1-47 1-49 (584)
192 PRK06327 dihydrolipoamide dehy 98.2 4.8E-05 1E-09 80.0 17.1 102 11-172 183-287 (475)
193 TIGR03364 HpnW_proposed FAD de 98.2 1E-05 2.2E-10 82.0 11.5 32 12-43 1-34 (365)
194 PRK13339 malate:quinone oxidor 98.2 1.8E-05 4E-10 82.4 13.4 35 11-45 6-44 (497)
195 PRK09754 phenylpropionate diox 98.2 9.6E-06 2.1E-10 83.2 11.2 95 11-165 144-240 (396)
196 PTZ00383 malate:quinone oxidor 98.2 1.9E-05 4.1E-10 82.5 13.5 34 11-44 45-82 (497)
197 TIGR03329 Phn_aa_oxid putative 98.2 5.9E-06 1.3E-10 86.5 9.6 32 11-42 24-59 (460)
198 PRK06370 mercuric reductase; V 98.2 5E-05 1.1E-09 79.6 16.4 102 11-172 171-274 (463)
199 PRK07251 pyridine nucleotide-d 98.2 1.9E-05 4.2E-10 82.1 13.2 98 11-172 157-256 (438)
200 PF06039 Mqo: Malate:quinone o 98.2 1.4E-05 3.1E-10 80.0 11.2 35 11-45 3-41 (488)
201 PF01134 GIDA: Glucose inhibit 98.2 2.4E-06 5.3E-11 85.2 5.8 124 13-165 1-151 (392)
202 KOG1335 Dihydrolipoamide dehyd 98.2 2.4E-05 5.2E-10 75.7 12.2 146 11-226 211-363 (506)
203 TIGR00551 nadB L-aspartate oxi 98.2 1.8E-05 3.9E-10 83.3 12.6 35 11-46 2-38 (488)
204 PRK07804 L-aspartate oxidase; 98.2 3.7E-05 8E-10 81.9 14.8 36 11-46 16-53 (541)
205 PLN02985 squalene monooxygenas 98.1 3.1E-05 6.8E-10 81.7 13.9 32 11-42 43-76 (514)
206 PRK11101 glpA sn-glycerol-3-ph 98.1 2E-05 4.4E-10 84.0 12.5 33 11-43 6-40 (546)
207 TIGR00136 gidA glucose-inhibit 98.1 2.9E-05 6.4E-10 81.7 13.0 127 12-165 1-153 (617)
208 KOG2415 Electron transfer flav 98.1 1.3E-05 2.8E-10 78.2 9.5 102 11-114 76-211 (621)
209 PRK05945 sdhA succinate dehydr 98.1 1.8E-05 4E-10 84.9 11.9 36 11-46 3-42 (575)
210 COG1233 Phytoene dehydrogenase 98.1 2.3E-06 4.9E-11 89.9 4.8 47 11-57 3-51 (487)
211 PRK07818 dihydrolipoamide dehy 98.1 8.8E-05 1.9E-09 77.8 16.7 102 11-172 172-276 (466)
212 KOG2614 Kynurenine 3-monooxyge 98.1 1.6E-05 3.4E-10 78.3 10.1 35 11-45 2-38 (420)
213 KOG2820 FAD-dependent oxidored 98.1 2.9E-05 6.2E-10 74.1 11.5 71 79-173 148-218 (399)
214 PRK09078 sdhA succinate dehydr 98.1 5.2E-05 1.1E-09 81.7 15.2 36 11-46 12-49 (598)
215 PRK06116 glutathione reductase 98.1 3.3E-05 7.2E-10 80.7 13.4 100 11-172 167-268 (450)
216 PRK01747 mnmC bifunctional tRN 98.1 1.8E-05 3.9E-10 86.6 11.8 33 12-44 261-295 (662)
217 PRK05249 soluble pyridine nucl 98.1 3.3E-05 7.2E-10 80.9 13.1 99 11-172 175-275 (461)
218 PRK06263 sdhA succinate dehydr 98.1 4.1E-05 8.8E-10 81.8 13.8 36 11-46 7-44 (543)
219 TIGR01373 soxB sarcosine oxida 98.1 2.5E-05 5.4E-10 80.5 11.6 32 11-42 30-65 (407)
220 PRK08071 L-aspartate oxidase; 98.1 5E-05 1.1E-09 80.3 13.9 37 11-47 3-40 (510)
221 TIGR01320 mal_quin_oxido malat 98.1 3.3E-05 7.1E-10 80.9 12.4 33 13-45 2-38 (483)
222 PRK08275 putative oxidoreducta 98.1 2.1E-05 4.4E-10 84.2 11.1 34 11-44 9-46 (554)
223 PRK08401 L-aspartate oxidase; 98.1 3.8E-05 8.3E-10 80.4 12.8 31 13-43 3-35 (466)
224 TIGR01424 gluta_reduc_2 glutat 98.1 4.2E-05 9.1E-10 79.7 12.9 99 11-172 166-266 (446)
225 PRK07057 sdhA succinate dehydr 98.1 8.3E-05 1.8E-09 80.0 15.1 36 11-46 12-49 (591)
226 PRK08641 sdhA succinate dehydr 98.0 0.00011 2.3E-09 79.2 15.7 38 9-46 1-40 (589)
227 PLN02464 glycerol-3-phosphate 98.0 4.5E-05 9.7E-10 82.5 12.7 37 11-47 71-109 (627)
228 PRK06115 dihydrolipoamide dehy 98.0 7.2E-05 1.6E-09 78.4 13.8 102 11-172 174-279 (466)
229 TIGR01812 sdhA_frdA_Gneg succi 98.0 7.4E-05 1.6E-09 80.3 14.2 34 13-46 1-36 (566)
230 PRK00711 D-amino acid dehydrog 98.0 4E-05 8.6E-10 79.2 11.6 32 13-44 2-35 (416)
231 COG1252 Ndh NADH dehydrogenase 98.0 4.9E-05 1.1E-09 76.3 11.6 128 13-216 157-300 (405)
232 PRK07843 3-ketosteroid-delta-1 98.0 6.6E-05 1.4E-09 80.3 13.4 37 11-47 7-45 (557)
233 TIGR03385 CoA_CoA_reduc CoA-di 98.0 5.3E-05 1.2E-09 78.6 12.4 98 11-172 137-236 (427)
234 PRK06854 adenylylsulfate reduc 98.0 7.4E-05 1.6E-09 80.6 13.9 34 11-44 11-48 (608)
235 PRK08205 sdhA succinate dehydr 98.0 5E-05 1.1E-09 81.7 12.4 36 11-46 5-41 (583)
236 PRK06467 dihydrolipoamide dehy 98.0 8.2E-05 1.8E-09 78.1 13.7 100 12-172 175-277 (471)
237 COG0578 GlpA Glycerol-3-phosph 98.0 7.8E-05 1.7E-09 77.1 12.9 39 11-49 12-52 (532)
238 PRK09564 coenzyme A disulfide 98.0 4.9E-05 1.1E-09 79.3 11.8 99 11-172 149-249 (444)
239 PRK06452 sdhA succinate dehydr 98.0 7.2E-05 1.6E-09 80.1 13.2 36 11-46 5-42 (566)
240 PLN02507 glutathione reductase 98.0 7E-05 1.5E-09 79.0 12.9 99 11-172 203-303 (499)
241 COG2081 Predicted flavoprotein 98.0 2.8E-05 6.1E-10 76.3 9.0 155 208-381 4-167 (408)
242 TIGR01421 gluta_reduc_1 glutat 98.0 7.4E-05 1.6E-09 77.9 12.9 101 11-172 166-268 (450)
243 PRK12845 3-ketosteroid-delta-1 98.0 0.00011 2.4E-09 78.4 14.3 39 11-50 16-56 (564)
244 PLN00128 Succinate dehydrogena 98.0 0.0001 2.2E-09 79.7 14.2 36 11-46 50-87 (635)
245 PTZ00139 Succinate dehydrogena 98.0 9.4E-05 2E-09 79.9 13.9 36 11-46 29-66 (617)
246 PRK08010 pyridine nucleotide-d 98.0 8.1E-05 1.8E-09 77.5 13.0 98 11-172 158-257 (441)
247 PRK07803 sdhA succinate dehydr 98.0 0.0001 2.2E-09 79.8 14.2 35 11-45 8-44 (626)
248 PRK07846 mycothione reductase; 98.0 7.5E-05 1.6E-09 77.8 12.7 99 11-173 166-266 (451)
249 PRK07573 sdhA succinate dehydr 98.0 0.00013 2.9E-09 79.1 15.0 35 11-45 35-71 (640)
250 PRK12842 putative succinate de 98.0 0.0002 4.4E-09 77.0 16.3 37 11-47 9-47 (574)
251 PRK07395 L-aspartate oxidase; 98.0 5.4E-05 1.2E-09 80.6 11.7 36 11-46 9-45 (553)
252 PRK14727 putative mercuric red 98.0 8.2E-05 1.8E-09 78.2 12.8 97 11-172 188-286 (479)
253 PRK05257 malate:quinone oxidor 98.0 7.3E-05 1.6E-09 78.4 12.3 35 11-45 5-43 (494)
254 PRK07845 flavoprotein disulfid 98.0 8.7E-05 1.9E-09 77.8 12.9 98 12-172 178-277 (466)
255 PRK08255 salicylyl-CoA 5-hydro 98.0 1.1E-05 2.3E-10 89.5 6.2 97 13-112 2-123 (765)
256 PRK07233 hypothetical protein; 98.0 1.1E-05 2.4E-10 83.8 6.0 38 13-50 1-40 (434)
257 PRK11883 protoporphyrinogen ox 97.9 6.9E-06 1.5E-10 85.8 4.4 38 13-50 2-43 (451)
258 PRK06134 putative FAD-binding 97.9 0.00022 4.7E-09 76.8 15.8 38 11-48 12-51 (581)
259 PRK08958 sdhA succinate dehydr 97.9 0.00014 3E-09 78.2 14.2 36 11-46 7-44 (588)
260 COG0562 Glf UDP-galactopyranos 97.9 2.2E-05 4.8E-10 74.4 6.9 73 12-96 2-77 (374)
261 PLN02268 probable polyamine ox 97.9 8.6E-06 1.9E-10 84.7 4.6 39 12-50 1-41 (435)
262 KOG2404 Fumarate reductase, fl 97.9 7.8E-05 1.7E-09 70.5 10.3 37 13-49 11-49 (477)
263 PRK14694 putative mercuric red 97.9 0.00012 2.6E-09 76.8 12.9 97 11-172 178-276 (468)
264 TIGR01438 TGR thioredoxin and 97.9 0.00015 3.3E-09 76.1 13.5 101 11-172 180-282 (484)
265 PRK13512 coenzyme A disulfide 97.9 8.1E-05 1.8E-09 77.4 11.3 94 12-172 149-244 (438)
266 TIGR03452 mycothione_red mycot 97.9 0.00015 3.2E-09 75.7 13.1 98 11-172 169-268 (452)
267 PLN02568 polyamine oxidase 97.9 1.1E-05 2.4E-10 85.3 4.8 42 9-50 3-51 (539)
268 COG0665 DadA Glycine/D-amino a 97.9 9.6E-05 2.1E-09 75.5 11.5 34 11-44 4-39 (387)
269 TIGR01423 trypano_reduc trypan 97.9 0.00015 3.2E-09 76.1 13.0 100 11-172 187-291 (486)
270 TIGR00562 proto_IX_ox protopor 97.9 1.7E-05 3.7E-10 83.2 6.0 39 12-50 3-47 (462)
271 COG1232 HemY Protoporphyrinoge 97.9 1.7E-05 3.6E-10 80.8 5.5 38 13-50 2-43 (444)
272 TIGR01811 sdhA_Bsu succinate d 97.9 0.00015 3.2E-09 78.2 13.0 31 14-44 1-33 (603)
273 PTZ00367 squalene epoxidase; P 97.9 8.5E-05 1.8E-09 79.0 10.9 32 11-42 33-66 (567)
274 PRK13748 putative mercuric red 97.9 0.00014 3E-09 78.3 12.6 97 11-172 270-368 (561)
275 PTZ00306 NADH-dependent fumara 97.8 0.00036 7.7E-09 80.9 16.2 37 11-47 409-447 (1167)
276 PRK09077 L-aspartate oxidase; 97.8 0.0003 6.5E-09 75.0 14.6 36 11-46 8-44 (536)
277 PRK07512 L-aspartate oxidase; 97.8 0.00018 4E-09 76.1 12.8 33 11-43 9-41 (513)
278 TIGR01292 TRX_reduct thioredox 97.8 6.3E-05 1.4E-09 73.9 8.8 32 209-245 2-33 (300)
279 PRK14989 nitrite reductase sub 97.8 0.00012 2.6E-09 81.6 11.8 101 11-171 145-247 (847)
280 TIGR03169 Nterm_to_SelD pyridi 97.8 4.3E-05 9.4E-10 77.5 7.6 45 339-383 63-109 (364)
281 PF13454 NAD_binding_9: FAD-NA 97.8 0.00022 4.8E-09 62.7 11.1 34 211-246 1-36 (156)
282 PLN02676 polyamine oxidase 97.8 2.2E-05 4.8E-10 82.3 5.4 46 11-56 26-74 (487)
283 PTZ00058 glutathione reductase 97.8 0.00021 4.6E-09 76.0 12.8 101 11-172 237-339 (561)
284 COG3349 Uncharacterized conser 97.8 1.8E-05 4E-10 80.3 4.4 38 13-50 2-41 (485)
285 PLN02815 L-aspartate oxidase 97.8 0.00026 5.6E-09 75.9 13.4 35 11-46 29-65 (594)
286 PRK06069 sdhA succinate dehydr 97.8 0.00017 3.6E-09 77.7 11.9 36 11-46 5-45 (577)
287 PRK12844 3-ketosteroid-delta-1 97.8 0.00055 1.2E-08 73.3 15.5 38 11-48 6-45 (557)
288 KOG0685 Flavin-containing amin 97.8 2.2E-05 4.9E-10 78.3 4.5 40 11-50 21-63 (498)
289 PTZ00052 thioredoxin reductase 97.8 0.00032 6.8E-09 74.1 13.3 98 11-172 182-281 (499)
290 TIGR02374 nitri_red_nirB nitri 97.8 0.00015 3.2E-09 80.7 11.3 100 11-172 140-241 (785)
291 TIGR02733 desat_CrtD C-3',4' d 97.8 2.6E-05 5.6E-10 82.5 5.0 39 12-50 2-42 (492)
292 TIGR02485 CobZ_N-term precorri 97.8 0.00029 6.3E-09 73.2 12.7 62 83-166 122-183 (432)
293 COG0446 HcaD Uncharacterized N 97.8 0.00023 5E-09 73.3 11.9 95 12-165 137-236 (415)
294 PLN02576 protoporphyrinogen ox 97.8 2.8E-05 6.1E-10 82.3 5.2 39 12-50 13-54 (496)
295 PRK12843 putative FAD-binding 97.7 0.00075 1.6E-08 72.6 15.7 39 11-49 16-56 (578)
296 PRK06292 dihydrolipoamide dehy 97.7 0.0004 8.6E-09 72.8 13.3 101 11-172 169-271 (460)
297 TIGR01176 fum_red_Fp fumarate 97.7 0.00033 7.2E-09 75.1 12.8 36 11-46 3-42 (580)
298 PRK09231 fumarate reductase fl 97.7 0.00037 8E-09 74.9 13.1 36 11-46 4-43 (582)
299 PRK12416 protoporphyrinogen ox 97.7 2.9E-05 6.2E-10 81.5 4.4 38 13-50 3-48 (463)
300 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.3E-05 7.1E-10 77.7 4.6 39 12-50 2-42 (377)
301 PRK08626 fumarate reductase fl 97.7 0.00053 1.1E-08 74.6 14.0 35 11-45 5-41 (657)
302 TIGR02734 crtI_fam phytoene de 97.7 2.9E-05 6.4E-10 82.3 4.0 37 14-50 1-39 (502)
303 PTZ00153 lipoamide dehydrogena 97.7 0.00051 1.1E-08 74.3 13.4 105 11-173 312-431 (659)
304 PF07992 Pyr_redox_2: Pyridine 97.7 8.3E-05 1.8E-09 68.3 6.3 32 209-245 1-32 (201)
305 PRK10262 thioredoxin reductase 97.6 0.00054 1.2E-08 68.2 11.8 101 11-172 146-251 (321)
306 PTZ00318 NADH dehydrogenase-li 97.6 0.00092 2E-08 69.2 13.9 90 12-165 174-279 (424)
307 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 0.00018 3.8E-09 73.2 8.0 33 13-45 2-36 (433)
308 TIGR02731 phytoene_desat phyto 97.6 5.8E-05 1.3E-09 78.9 4.8 37 13-49 1-39 (453)
309 TIGR02730 carot_isom carotene 97.6 5.6E-05 1.2E-09 79.9 4.6 46 12-57 1-48 (493)
310 PLN02852 ferredoxin-NADP+ redu 97.6 6.6E-05 1.4E-09 78.1 4.9 39 205-246 24-62 (491)
311 PF04820 Trp_halogenase: Trypt 97.6 0.00011 2.4E-09 76.4 6.2 58 81-165 151-210 (454)
312 PLN02546 glutathione reductase 97.6 0.00068 1.5E-08 72.2 12.0 100 11-172 252-353 (558)
313 PTZ00363 rab-GDP dissociation 97.5 8.2E-05 1.8E-09 76.7 4.6 43 8-50 1-45 (443)
314 PLN02529 lysine-specific histo 97.5 0.0001 2.2E-09 80.2 4.8 40 11-50 160-201 (738)
315 PF01134 GIDA: Glucose inhibit 97.5 0.00022 4.7E-09 71.4 6.4 45 335-379 100-150 (392)
316 COG1231 Monoamine oxidase [Ami 97.4 0.00013 2.7E-09 73.1 4.4 40 10-49 6-47 (450)
317 COG0445 GidA Flavin-dependent 97.4 0.00041 8.8E-09 70.7 8.0 34 9-42 2-37 (621)
318 TIGR02061 aprA adenosine phosp 97.4 0.0013 2.7E-08 70.8 12.2 31 13-43 1-37 (614)
319 PRK13800 putative oxidoreducta 97.4 0.00075 1.6E-08 76.4 10.5 33 11-43 13-47 (897)
320 TIGR02732 zeta_caro_desat caro 97.4 0.00015 3.2E-09 76.1 4.5 38 13-50 1-40 (474)
321 PLN02463 lycopene beta cyclase 97.4 0.00046 1E-08 71.4 7.7 50 333-382 117-170 (447)
322 PRK06847 hypothetical protein; 97.4 0.0011 2.4E-08 67.4 10.5 52 331-382 108-164 (375)
323 KOG1298 Squalene monooxygenase 97.4 0.0014 3E-08 63.9 10.2 31 11-41 45-77 (509)
324 PLN02487 zeta-carotene desatur 97.4 0.00018 4E-09 76.4 4.8 39 12-50 76-116 (569)
325 KOG1336 Monodehydroascorbate/f 97.4 0.0014 3.1E-08 65.9 10.6 105 11-175 213-319 (478)
326 PF13434 K_oxygenase: L-lysine 97.4 0.00072 1.6E-08 67.5 8.7 130 11-164 190-339 (341)
327 PLN02328 lysine-specific histo 97.3 0.00019 4.1E-09 78.5 4.8 40 11-50 238-279 (808)
328 PRK12779 putative bifunctional 97.3 0.00026 5.6E-09 79.8 5.9 36 205-245 304-339 (944)
329 TIGR03140 AhpF alkyl hydropero 97.3 0.0018 4E-08 68.7 11.7 97 11-172 352-453 (515)
330 PF03486 HI0933_like: HI0933-l 97.3 0.00058 1.3E-08 69.7 6.9 51 332-382 111-167 (409)
331 COG4529 Uncharacterized protei 97.3 0.0039 8.5E-08 63.1 12.5 37 208-246 2-38 (474)
332 PTZ00188 adrenodoxin reductase 97.2 0.00038 8.2E-09 71.6 4.8 37 206-246 38-74 (506)
333 PLN02612 phytoene desaturase 97.2 0.00036 7.8E-09 74.8 4.8 39 11-49 93-133 (567)
334 PLN03000 amine oxidase 97.2 0.0004 8.6E-09 76.2 5.0 40 11-50 184-225 (881)
335 PRK12837 3-ketosteroid-delta-1 97.2 0.00046 1E-08 73.2 5.1 35 11-46 7-43 (513)
336 KOG2665 Predicted FAD-dependen 97.1 0.0018 3.9E-08 61.4 8.2 35 11-45 48-86 (453)
337 PRK05868 hypothetical protein; 97.1 0.0014 3.1E-08 66.5 8.2 34 208-246 2-35 (372)
338 TIGR01789 lycopene_cycl lycope 97.1 0.0015 3.2E-08 66.3 8.2 32 350-381 107-138 (370)
339 KOG2853 Possible oxidoreductas 97.1 0.0062 1.3E-07 58.5 11.6 40 11-50 86-140 (509)
340 KOG1276 Protoporphyrinogen oxi 97.1 0.00048 1E-08 68.0 4.2 40 11-50 11-54 (491)
341 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00052 1.1E-08 69.4 4.7 33 12-44 3-37 (436)
342 PLN02976 amine oxidase 97.1 0.00047 1E-08 78.4 4.6 40 11-50 693-734 (1713)
343 PRK09853 putative selenate red 97.1 0.0013 2.9E-08 73.5 7.8 37 205-246 537-573 (1019)
344 PF05834 Lycopene_cycl: Lycope 97.0 0.0011 2.3E-08 67.5 6.2 49 334-382 91-143 (374)
345 PLN02172 flavin-containing mon 97.0 0.0086 1.9E-07 62.4 12.6 36 205-245 8-43 (461)
346 PRK15317 alkyl hydroperoxide r 97.0 0.0066 1.4E-07 64.6 12.0 96 11-172 351-452 (517)
347 PRK12834 putative FAD-binding 97.0 0.00077 1.7E-08 72.2 4.9 37 11-47 4-44 (549)
348 TIGR02462 pyranose_ox pyranose 96.9 0.00081 1.8E-08 70.8 4.5 38 12-49 1-40 (544)
349 PRK09897 hypothetical protein; 96.9 0.0091 2E-07 63.1 11.8 35 208-245 2-36 (534)
350 TIGR01316 gltA glutamate synth 96.9 0.0095 2.1E-07 62.1 11.8 32 11-42 272-305 (449)
351 TIGR01790 carotene-cycl lycope 96.9 0.0018 3.8E-08 66.3 6.1 49 333-381 88-141 (388)
352 PF13738 Pyr_redox_3: Pyridine 96.8 0.0042 9E-08 57.1 7.7 31 211-245 1-31 (203)
353 PF06100 Strep_67kDa_ant: Stre 96.8 0.014 3E-07 59.7 11.7 39 11-49 2-46 (500)
354 COG2509 Uncharacterized FAD-de 96.8 0.0089 1.9E-07 59.9 9.9 58 84-166 173-230 (486)
355 PRK12831 putative oxidoreducta 96.8 0.045 9.7E-07 57.3 15.8 32 11-42 281-314 (464)
356 PRK07236 hypothetical protein; 96.8 0.0049 1.1E-07 63.0 8.5 36 206-246 5-40 (386)
357 PRK07588 hypothetical protein; 96.7 0.0028 6.2E-08 64.8 6.7 34 208-246 1-34 (391)
358 PRK12770 putative glutamate sy 96.7 0.014 3E-07 58.9 11.4 31 12-42 173-206 (352)
359 PLN02697 lycopene epsilon cycl 96.7 0.0033 7.2E-08 66.3 7.0 50 332-381 194-248 (529)
360 PRK05192 tRNA uridine 5-carbox 96.7 0.022 4.8E-07 60.5 12.7 32 209-245 6-37 (618)
361 PRK11749 dihydropyrimidine deh 96.7 0.061 1.3E-06 56.3 16.0 32 11-42 273-307 (457)
362 PF00732 GMC_oxred_N: GMC oxid 96.6 0.0018 3.8E-08 63.6 3.9 32 12-43 1-35 (296)
363 PRK12778 putative bifunctional 96.6 0.058 1.3E-06 60.2 16.1 32 11-42 570-604 (752)
364 PRK08163 salicylate hydroxylas 96.6 0.0094 2E-07 61.1 9.1 35 207-246 4-38 (396)
365 KOG2495 NADH-dehydrogenase (ub 96.6 0.0042 9.2E-08 61.6 5.9 97 13-171 220-333 (491)
366 TIGR03862 flavo_PP4765 unchara 96.5 0.015 3.2E-07 58.5 9.6 66 78-171 77-145 (376)
367 PRK12775 putative trifunctiona 96.5 0.0029 6.2E-08 72.2 5.0 36 206-246 429-464 (1006)
368 PRK09126 hypothetical protein; 96.4 0.017 3.7E-07 59.1 10.0 49 334-382 114-168 (392)
369 COG3075 GlpB Anaerobic glycero 96.4 0.0031 6.7E-08 60.3 4.1 32 11-42 2-35 (421)
370 TIGR01470 cysG_Nterm siroheme 96.4 0.0047 1E-07 56.8 4.9 35 205-244 7-41 (205)
371 PRK06834 hypothetical protein; 96.4 0.013 2.9E-07 61.7 8.9 48 335-382 105-157 (488)
372 PRK06753 hypothetical protein; 96.4 0.015 3.2E-07 59.1 9.0 33 209-246 2-34 (373)
373 TIGR03315 Se_ygfK putative sel 96.4 0.0042 9E-08 69.9 5.2 36 206-246 536-571 (1012)
374 PRK04176 ribulose-1,5-biphosph 96.4 0.026 5.7E-07 54.0 10.0 35 207-246 25-59 (257)
375 PRK06567 putative bifunctional 96.3 0.0047 1E-07 68.5 5.2 36 205-245 381-416 (1028)
376 KOG2844 Dimethylglycine dehydr 96.3 0.012 2.6E-07 61.5 7.7 59 81-165 184-242 (856)
377 PRK08773 2-octaprenyl-3-methyl 96.3 0.012 2.5E-07 60.4 7.8 51 332-382 115-170 (392)
378 TIGR03143 AhpF_homolog putativ 96.3 0.037 8E-07 59.4 11.9 32 11-42 143-176 (555)
379 PRK07045 putative monooxygenas 96.3 0.011 2.4E-07 60.4 7.6 50 333-382 109-166 (388)
380 PRK01438 murD UDP-N-acetylmura 96.3 0.0069 1.5E-07 63.8 6.2 32 10-41 15-48 (480)
381 KOG1399 Flavin-containing mono 96.3 0.056 1.2E-06 55.7 12.4 39 207-250 6-48 (448)
382 TIGR02032 GG-red-SF geranylger 96.3 0.012 2.5E-07 57.5 7.2 33 209-246 2-34 (295)
383 KOG3855 Monooxygenase involved 96.2 0.049 1.1E-06 54.0 10.9 36 11-46 36-79 (481)
384 TIGR01318 gltD_gamma_fam gluta 96.2 0.18 3.8E-06 53.0 16.0 32 11-42 282-316 (467)
385 PRK10157 putative oxidoreducta 96.2 0.0064 1.4E-07 63.0 5.2 32 209-245 7-38 (428)
386 COG1053 SdhA Succinate dehydro 96.2 0.0057 1.2E-07 65.0 4.8 35 11-45 6-42 (562)
387 TIGR00136 gidA glucose-inhibit 96.1 0.042 9.2E-07 58.4 11.0 32 209-245 2-33 (617)
388 PRK05714 2-octaprenyl-3-methyl 96.1 0.025 5.5E-07 58.1 9.3 49 334-382 116-169 (405)
389 PRK01438 murD UDP-N-acetylmura 96.1 0.0077 1.7E-07 63.5 5.5 36 205-245 14-49 (480)
390 TIGR01984 UbiH 2-polyprenyl-6- 96.1 0.019 4E-07 58.6 8.2 51 332-382 107-163 (382)
391 PRK07333 2-octaprenyl-6-methox 96.1 0.013 2.9E-07 60.1 7.2 51 332-382 113-168 (403)
392 COG0654 UbiH 2-polyprenyl-6-me 96.1 0.017 3.6E-07 59.1 7.7 51 332-382 106-163 (387)
393 COG3486 IucD Lysine/ornithine 96.0 0.085 1.8E-06 52.4 11.7 48 103-173 295-344 (436)
394 PRK07494 2-octaprenyl-6-methox 96.0 0.025 5.4E-07 57.8 8.7 34 208-246 8-41 (388)
395 KOG2960 Protein involved in th 96.0 0.0018 3.9E-08 57.9 0.2 39 12-50 77-120 (328)
396 PRK02106 choline dehydrogenase 96.0 0.0066 1.4E-07 65.3 4.6 32 11-42 5-39 (560)
397 PRK06184 hypothetical protein; 96.0 0.02 4.3E-07 60.7 8.1 34 208-246 4-37 (502)
398 PRK12810 gltD glutamate syntha 96.0 0.16 3.5E-06 53.3 14.8 31 11-41 281-314 (471)
399 PF01266 DAO: FAD dependent ox 96.0 0.036 7.8E-07 55.5 9.4 49 334-383 151-205 (358)
400 KOG2755 Oxidoreductase [Genera 96.0 0.02 4.3E-07 53.2 6.5 34 209-245 1-34 (334)
401 PRK12769 putative oxidoreducta 95.9 0.21 4.5E-06 54.8 15.8 32 11-42 468-502 (654)
402 COG2072 TrkA Predicted flavopr 95.9 0.024 5.2E-07 58.8 8.0 35 207-245 8-42 (443)
403 PRK12814 putative NADPH-depend 95.9 0.3 6.4E-06 53.5 16.6 32 11-42 323-357 (652)
404 PRK07190 hypothetical protein; 95.9 0.029 6.3E-07 59.1 8.4 34 208-246 6-39 (487)
405 PRK08849 2-octaprenyl-3-methyl 95.8 0.038 8.1E-07 56.4 8.9 47 336-382 116-168 (384)
406 PRK06718 precorrin-2 dehydroge 95.8 0.019 4.1E-07 52.7 5.9 36 204-244 7-42 (202)
407 TIGR01988 Ubi-OHases Ubiquinon 95.7 0.035 7.6E-07 56.5 8.2 51 332-382 108-164 (385)
408 KOG3851 Sulfide:quinone oxidor 95.7 0.015 3.2E-07 55.6 4.8 32 352-383 114-147 (446)
409 PF04820 Trp_halogenase: Trypt 95.7 0.031 6.8E-07 58.2 7.9 53 330-382 154-212 (454)
410 KOG4254 Phytoene desaturase [C 95.7 0.0075 1.6E-07 60.2 2.9 39 11-49 14-54 (561)
411 COG1206 Gid NAD(FAD)-utilizing 95.7 0.041 8.9E-07 52.9 7.6 34 11-44 3-38 (439)
412 TIGR03219 salicylate_mono sali 95.7 0.032 7E-07 57.6 7.8 34 209-246 2-35 (414)
413 KOG0042 Glycerol-3-phosphate d 95.7 0.013 2.9E-07 59.7 4.6 39 11-49 67-107 (680)
414 PRK05562 precorrin-2 dehydroge 95.7 0.019 4.2E-07 53.0 5.4 33 205-242 23-55 (223)
415 PRK07608 ubiquinone biosynthes 95.7 0.013 2.8E-07 59.8 4.8 33 209-246 7-39 (388)
416 TIGR01317 GOGAT_sm_gam glutama 95.6 0.0082 1.8E-07 63.2 3.2 37 205-246 141-177 (485)
417 KOG2311 NAD/FAD-utilizing prot 95.6 0.052 1.1E-06 54.7 8.4 31 11-41 28-60 (679)
418 PRK06475 salicylate hydroxylas 95.6 0.035 7.7E-07 57.0 7.6 34 208-246 3-36 (400)
419 KOG0399 Glutamate synthase [Am 95.5 0.035 7.5E-07 61.3 7.3 38 204-246 1782-1819(2142)
420 PRK05732 2-octaprenyl-6-methox 95.5 0.049 1.1E-06 55.7 8.4 49 334-382 116-170 (395)
421 KOG1800 Ferredoxin/adrenodoxin 95.5 0.034 7.4E-07 54.5 6.5 36 208-246 21-56 (468)
422 TIGR01372 soxA sarcosine oxida 95.3 0.12 2.6E-06 59.3 11.5 93 11-171 317-413 (985)
423 PRK01747 mnmC bifunctional tRN 95.3 0.07 1.5E-06 58.7 9.1 33 208-245 261-293 (662)
424 PRK08244 hypothetical protein; 95.3 0.04 8.8E-07 58.3 7.0 33 209-246 4-36 (493)
425 COG2303 BetA Choline dehydroge 95.3 0.019 4.1E-07 61.2 4.5 32 11-42 7-40 (542)
426 COG0493 GltD NADPH-dependent g 95.3 0.018 3.8E-07 59.6 4.1 37 205-246 121-157 (457)
427 TIGR02023 BchP-ChlP geranylger 95.3 0.046 9.9E-07 55.9 7.1 31 209-244 2-32 (388)
428 PRK08850 2-octaprenyl-6-methox 95.2 0.052 1.1E-06 55.8 7.6 49 334-382 115-169 (405)
429 PLN00093 geranylgeranyl diphos 95.2 0.086 1.9E-06 54.9 9.0 34 208-246 40-73 (450)
430 PF01494 FAD_binding_3: FAD bi 95.2 0.02 4.4E-07 57.3 4.2 33 209-246 3-35 (356)
431 TIGR03378 glycerol3P_GlpB glyc 95.2 0.021 4.6E-07 58.0 4.3 31 12-42 1-33 (419)
432 TIGR00275 flavoprotein, HI0933 95.2 0.033 7.2E-07 57.1 5.8 48 333-381 108-160 (400)
433 COG0029 NadB Aspartate oxidase 95.2 0.025 5.4E-07 57.5 4.6 32 13-44 9-41 (518)
434 PRK08020 ubiF 2-octaprenyl-3-m 95.2 0.067 1.4E-06 54.7 8.0 49 334-382 116-170 (391)
435 TIGR01810 betA choline dehydro 95.1 0.019 4.1E-07 61.4 3.8 31 13-43 1-34 (532)
436 PRK12809 putative oxidoreducta 95.0 0.93 2E-05 49.6 16.5 32 11-42 451-485 (639)
437 PRK08013 oxidoreductase; Provi 94.9 0.05 1.1E-06 55.9 6.4 51 332-382 113-169 (400)
438 PRK11445 putative oxidoreducta 94.9 0.1 2.3E-06 52.5 8.6 32 209-246 3-34 (351)
439 PRK06183 mhpA 3-(3-hydroxyphen 94.9 0.034 7.3E-07 59.6 5.2 34 208-246 11-44 (538)
440 COG0665 DadA Glycine/D-amino a 94.9 0.19 4.1E-06 51.1 10.6 34 207-245 4-37 (387)
441 TIGR02028 ChlP geranylgeranyl 94.9 0.076 1.6E-06 54.5 7.5 33 209-246 2-34 (398)
442 COG3573 Predicted oxidoreducta 94.9 0.03 6.5E-07 53.8 4.1 39 11-49 5-47 (552)
443 PLN02785 Protein HOTHEAD 94.8 0.03 6.6E-07 60.1 4.4 33 11-43 55-88 (587)
444 PRK10015 oxidoreductase; Provi 94.8 0.047 1E-06 56.6 5.7 33 209-246 7-39 (429)
445 PRK08401 L-aspartate oxidase; 94.7 0.27 5.9E-06 51.6 11.3 33 208-245 2-34 (466)
446 COG1251 NirB NAD(P)H-nitrite r 94.7 0.095 2.1E-06 55.9 7.7 42 341-382 70-114 (793)
447 PRK06996 hypothetical protein; 94.7 0.07 1.5E-06 54.8 6.6 36 208-245 12-48 (398)
448 KOG2311 NAD/FAD-utilizing prot 94.6 0.29 6.2E-06 49.6 10.3 31 209-244 30-60 (679)
449 PRK06126 hypothetical protein; 94.6 0.028 6.1E-07 60.3 3.7 34 208-246 8-41 (545)
450 COG0445 GidA Flavin-dependent 94.6 0.077 1.7E-06 54.7 6.4 32 209-245 6-37 (621)
451 PRK13339 malate:quinone oxidor 94.6 0.33 7.2E-06 51.0 11.4 32 209-243 8-39 (497)
452 KOG1346 Programmed cell death 94.6 0.032 6.9E-07 55.2 3.5 51 333-383 260-313 (659)
453 PRK05329 anaerobic glycerol-3- 94.5 0.22 4.8E-06 51.2 9.8 92 15-165 219-317 (422)
454 PRK12771 putative glutamate sy 94.5 0.8 1.7E-05 49.4 14.5 31 11-41 267-300 (564)
455 PF12831 FAD_oxidored: FAD dep 94.5 0.035 7.6E-07 57.5 3.9 32 210-246 2-33 (428)
456 PRK07538 hypothetical protein; 94.4 0.15 3.2E-06 52.6 8.4 33 209-246 2-34 (413)
457 PRK06617 2-octaprenyl-6-methox 94.4 0.15 3.3E-06 51.7 8.4 32 209-245 3-34 (374)
458 COG0492 TrxB Thioredoxin reduc 94.3 0.47 1E-05 46.5 11.1 95 11-171 143-240 (305)
459 KOG0404 Thioredoxin reductase 94.3 0.14 3.1E-06 46.5 6.7 43 341-383 81-126 (322)
460 KOG2852 Possible oxidoreductas 94.3 0.021 4.6E-07 53.7 1.5 36 11-46 10-53 (380)
461 PRK13984 putative oxidoreducta 94.1 1.5 3.2E-05 47.8 15.5 20 11-30 418-437 (604)
462 PF00890 FAD_binding_2: FAD bi 93.8 0.43 9.2E-06 49.3 10.3 32 210-246 2-33 (417)
463 KOG3923 D-aspartate oxidase [A 93.6 0.086 1.9E-06 50.0 4.3 31 11-41 3-42 (342)
464 PF01210 NAD_Gly3P_dh_N: NAD-d 93.6 0.066 1.4E-06 47.0 3.4 30 13-42 1-32 (157)
465 COG1148 HdrA Heterodisulfide r 93.6 0.15 3.2E-06 51.7 6.0 36 206-246 123-158 (622)
466 PRK06719 precorrin-2 dehydroge 93.5 0.076 1.7E-06 46.6 3.6 34 204-242 10-43 (157)
467 PF02558 ApbA: Ketopantoate re 93.5 0.086 1.9E-06 45.8 3.9 31 210-245 1-31 (151)
468 COG0644 FixC Dehydrogenases (f 93.5 0.21 4.5E-06 51.2 7.3 33 209-246 5-37 (396)
469 KOG0405 Pyridine nucleotide-di 93.5 0.29 6.3E-06 47.6 7.5 101 11-173 189-291 (478)
470 TIGR01989 COQ6 Ubiquinone bios 93.4 0.35 7.6E-06 50.3 9.0 50 333-382 120-184 (437)
471 PF13450 NAD_binding_8: NAD(P) 93.4 0.069 1.5E-06 39.4 2.6 30 212-246 1-30 (68)
472 COG1206 Gid NAD(FAD)-utilizing 93.3 0.35 7.7E-06 46.7 7.7 40 208-252 4-43 (439)
473 PF13241 NAD_binding_7: Putati 93.3 0.034 7.3E-07 45.0 0.9 36 205-245 5-40 (103)
474 PRK05335 tRNA (uracil-5-)-meth 93.3 0.081 1.7E-06 53.9 3.7 35 208-247 3-37 (436)
475 COG0579 Predicted dehydrogenas 93.1 0.22 4.8E-06 50.8 6.6 50 334-383 157-213 (429)
476 PRK08255 salicylyl-CoA 5-hydro 93.1 0.14 3.1E-06 57.1 5.7 35 209-246 2-36 (765)
477 PRK10637 cysG siroheme synthas 92.8 0.15 3.2E-06 53.2 5.0 35 204-243 9-43 (457)
478 COG0569 TrkA K+ transport syst 92.8 0.12 2.6E-06 48.4 3.9 30 13-42 2-33 (225)
479 PRK07530 3-hydroxybutyryl-CoA 92.8 0.13 2.9E-06 50.2 4.4 34 9-42 2-37 (292)
480 TIGR01470 cysG_Nterm siroheme 92.8 0.15 3.3E-06 46.8 4.5 31 11-41 9-41 (205)
481 PF01488 Shikimate_DH: Shikima 92.7 0.14 3.1E-06 43.6 3.9 39 204-246 9-47 (135)
482 KOG1238 Glucose dehydrogenase/ 92.6 0.11 2.5E-06 54.6 3.9 34 11-44 57-93 (623)
483 KOG2614 Kynurenine 3-monooxyge 92.6 0.48 1E-05 47.4 7.9 33 208-245 3-35 (420)
484 PF03721 UDPG_MGDP_dh_N: UDP-g 92.6 0.099 2.2E-06 47.2 2.9 31 13-43 2-34 (185)
485 PRK14106 murD UDP-N-acetylmura 92.5 0.16 3.5E-06 53.0 5.0 36 205-245 3-38 (450)
486 TIGR00137 gid_trmFO tRNA:m(5)U 92.4 0.12 2.6E-06 53.0 3.6 34 209-247 2-35 (433)
487 PF13241 NAD_binding_7: Putati 92.3 0.12 2.7E-06 41.7 3.0 31 11-41 7-39 (103)
488 PRK06719 precorrin-2 dehydroge 92.1 0.2 4.4E-06 43.9 4.3 32 10-41 12-45 (157)
489 KOG2852 Possible oxidoreductas 92.1 0.12 2.6E-06 48.9 2.9 39 206-244 9-48 (380)
490 PF02737 3HCDH_N: 3-hydroxyacy 92.0 0.16 3.5E-06 45.7 3.6 30 13-42 1-32 (180)
491 PRK07066 3-hydroxybutyryl-CoA 91.9 0.2 4.4E-06 49.4 4.4 32 11-42 7-40 (321)
492 PRK05945 sdhA succinate dehydr 91.7 2.1 4.5E-05 46.3 12.4 34 209-245 5-38 (575)
493 KOG4716 Thioredoxin reductase 91.6 0.34 7.3E-06 46.9 5.4 96 13-165 200-299 (503)
494 PRK14106 murD UDP-N-acetylmura 91.6 0.2 4.2E-06 52.4 4.3 32 11-42 5-38 (450)
495 PRK02705 murD UDP-N-acetylmura 91.6 0.17 3.8E-06 52.9 3.9 32 13-44 2-35 (459)
496 PRK07819 3-hydroxybutyryl-CoA 91.2 0.22 4.8E-06 48.5 3.9 31 12-42 6-38 (286)
497 PF01593 Amino_oxidase: Flavin 91.2 0.16 3.4E-06 52.3 3.0 32 21-52 1-34 (450)
498 PRK15116 sulfur acceptor prote 91.2 0.22 4.8E-06 47.6 3.8 32 11-42 30-64 (268)
499 PRK06718 precorrin-2 dehydroge 91.2 0.29 6.3E-06 44.9 4.4 32 10-41 9-42 (202)
500 PRK08293 3-hydroxybutyryl-CoA 91.1 0.24 5.2E-06 48.3 4.0 31 12-42 4-36 (287)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=3.2e-77 Score=620.31 Aligned_cols=450 Identities=32% Similarity=0.547 Sum_probs=265.0
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC---------CccCcccccCCCCCcccCCCCCCCCCCCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH---------CSFNSTKLQTPRCDFEFSDYPWPERDDASF 80 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (522)
++|+|||||+|||++|+.| .|++++|||+++++||+|+. ..|+++.+|+++.+|.|+|+|+|+.. +.|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~-p~f 80 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY-PDF 80 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC-SSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC-CCC
Confidence 5899999999999999999 99999999999999999983 25899999999999999999999988 899
Q ss_pred CChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEE
Q 041145 81 PSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVM 160 (522)
Q Consensus 81 ~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vVi 160 (522)
+++.++.+||+.|+++|+|.++|+|+|+|+++++.++.. ..++|.|++++++..++..||+||+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~----------------~~~~W~V~~~~~g~~~~~~fD~Vvv 144 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFS----------------ATGKWEVTTENDGKEETEEFDAVVV 144 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-----------------ETEEEEEETTTTEEEEEEECEEEE
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccC----------------CCceEEEEeecCCeEEEEEeCeEEE
Confidence 999999999999999999999999999999999854321 1468999886544456778999999
Q ss_pred eeeccCCCCCCCC--CCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 041145 161 CIGKFGDIPRMPA--FPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPC 238 (522)
Q Consensus 161 AtG~~s~~p~~p~--~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~V 238 (522)
|||++ +.|++|. +| |++.|.|+++||++|++ ++.++||||+|||+|+||+|||.+++..+ ++|
T Consensus 145 atG~~-~~P~~P~~~~~---G~e~F~G~i~HS~~yr~------~~~f~gKrVlVVG~g~Sg~DIa~el~~~a-----~~v 209 (531)
T PF00743_consen 145 ATGHF-SKPNIPEPSFP---GLEKFKGEIIHSKDYRD------PEPFKGKRVLVVGGGNSGADIAVELSRVA-----KKV 209 (531)
T ss_dssp EE-SS-SCESB-----C---TGGGHCSEEEEGGG--T------GGGGTTSEEEEESSSHHHHHHHHHHTTTS-----CCE
T ss_pred cCCCc-CCCCCChhhhh---hhhcCCeeEEccccCcC------hhhcCCCEEEEEeCCHhHHHHHHHHHHhc-----CCe
Confidence 99999 8999995 89 99999999999999998 56799999999999999999999999875 459
Q ss_pred EEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCC
Q 041145 239 TMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDH 318 (522)
Q Consensus 239 t~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 318 (522)
+++.|++.|++|+....|.|++..+.+|+..++...... +..+...++.+........++|.|.+
T Consensus 210 ~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~---------------~~~~~~~~~~l~~~~~~~~~gl~p~~ 274 (531)
T PF00743_consen 210 YLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPE---------------SLSNWLLEKKLNKRFDHENYGLKPKH 274 (531)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEEEecccccccccccccccccccccccccccccccccc---------------cccccccccccccccccccccccccc
Confidence 999999999999988789999988777765544322111 11122223333344455567787876
Q ss_pred ccccccccccccccCcchhhhcccCcEEEEeCceeEEecCcEEecCCcee-eccEEEEeccCCCCccccccCCCcccccc
Q 041145 319 PFEEDYASCQMAILPENFFSEAEKGNILFKRASKWWFWSGGIEFEDKSKL-EADVVLLATGYDGKKKLQSILPKPFSSLL 397 (522)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~i~~~~~~~v~~~dG~~~-~~D~VI~ATG~~~~~~l~~~~~~~~~~~~ 397 (522)
... ++.+.+++++.+.+..|+|+++.+ |.++++++|+|+||+++ ++|+||+||||+.++++ +...+.
T Consensus 275 ~~~-----~~~~~ind~l~~~i~~G~i~vk~~-I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpF---L~~~~~--- 342 (531)
T PF00743_consen 275 RFF-----SQHPTINDELPNRIRSGRIKVKPD-IKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPF---LDESLI--- 342 (531)
T ss_dssp -----------------------------EE--EEEE-SSEEEETTSEEEEE-SEEEE---EE---TT---B-TTTT---
T ss_pred ccc-----cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc---cccccc---
Confidence 643 345788999999999999998754 88999999999999985 69999999999998643 333322
Q ss_pred cCcccccccccccccCCC--CceeEeeccccc-chhhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 041145 398 ADSSGIMPLYRGTIHPLI--PNMAFVGYIETV-SNLQIAEIRCKWLARLADQKFKLPAVEKMLEQTTKEVEIMKQTTRFF 474 (522)
Q Consensus 398 ~~~~~~~~l~~~~~~~~~--pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 474 (522)
...++...||++++++++ |+|+|||++... +.++++|+||||+|++++|+.+||+.++|++++.++.+++.+.....
T Consensus 343 ~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~~ 422 (531)
T PF00743_consen 343 KVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGFS 422 (531)
T ss_dssp -S-SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 223445689999999864 899999998764 45789999999999999999999999999999998877766543223
Q ss_pred cCccceeeccccchHHHhhcCCCCccchhhHh-------hhcccCChhhhcCC
Q 041145 475 KRHCISTFSINHSDEICEEMGWKSWRKNNWIS-------EAFMPYSSQDYQEA 520 (522)
Q Consensus 475 ~~~~~~~~~~~y~d~L~~~~g~~~~~~~~~~~-------~~~~~~~~~~y~~~ 520 (522)
.+++...++..|+|+|++++|+.|..++.|++ .+|+|++|++||-.
T Consensus 423 ~~~~~~~d~~~y~deLA~~iG~~P~~~~l~~~dp~l~~~~~~gp~~p~~YRL~ 475 (531)
T PF00743_consen 423 PRHTIQVDYIDYMDELAREIGCKPNFWKLFLTDPKLARKLYFGPCTPYQYRLF 475 (531)
T ss_dssp HHHHHHHHHHHHHHTTS------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45677788999999999999999998875554 47999999999953
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=4.5e-60 Score=486.41 Aligned_cols=372 Identities=26% Similarity=0.478 Sum_probs=296.6
Q ss_pred CcccccccccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC--------------------CccCcccc
Q 041145 1 MASAQNHVQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH--------------------CSFNSTKL 58 (522)
Q Consensus 1 m~~~~~~~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~--------------------~~~~~~~~ 58 (522)
|+++++ ++..++|+|||||+|||+||++| .|++|+|||+++.+||+|.. ..|+++++
T Consensus 1 ~~~~~~-~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~t 79 (461)
T PLN02172 1 MAPAQN-PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRT 79 (461)
T ss_pred CCCccc-CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhc
Confidence 677644 44478999999999999999999 89999999999999999964 24888999
Q ss_pred cCCCCCcccCCCCCCCC------CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCC
Q 041145 59 QTPRCDFEFSDYPWPER------DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGS 132 (522)
Q Consensus 59 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 132 (522)
++|+..|.|+++|+++. ..+.|+++.++.+||+.|++++++.++|+|+++|+++++ .
T Consensus 80 n~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~--------------- 142 (461)
T PLN02172 80 NLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEP--V--------------- 142 (461)
T ss_pred cCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEee--c---------------
Confidence 99999999999998652 126799999999999999999999888999999999987 3
Q ss_pred CCCCCCCEEEEEEeCCe-eEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEE
Q 041145 133 LLKGHPVWEVAVETNQA-IQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVA 211 (522)
Q Consensus 133 ~~~~~~~~~v~~~~~~~-~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~ 211 (522)
.++|.|+++++++ ..+..||+||+|||++ +.|++|++| |+++|.|+++|++.|+. .+.+++|+|+
T Consensus 143 ----~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~-~~P~~P~ip---G~~~f~G~~iHs~~yr~------~~~~~gk~Vv 208 (461)
T PLN02172 143 ----DGKWRVQSKNSGGFSKDEIFDAVVVCNGHY-TEPNVAHIP---GIKSWPGKQIHSHNYRV------PDPFKNEVVV 208 (461)
T ss_pred ----CCeEEEEEEcCCCceEEEEcCEEEEeccCC-CCCcCCCCC---CcccCCceEEEecccCC------ccccCCCEEE
Confidence 3579999876432 3457899999999998 789999999 99999999999999998 4568999999
Q ss_pred EECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhh
Q 041145 212 IIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPM 291 (522)
Q Consensus 212 VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (522)
|||+|.||+|+|.+|+..+. +|+++.|++... ...
T Consensus 209 VVG~G~Sg~diA~~L~~~a~-----~V~l~~r~~~~~--~~~-------------------------------------- 243 (461)
T PLN02172 209 VIGNFASGADISRDIAKVAK-----EVHIASRASESD--TYE-------------------------------------- 243 (461)
T ss_pred EECCCcCHHHHHHHHHHhCC-----eEEEEEeecccc--ccc--------------------------------------
Confidence 99999999999999999864 599999976310 000
Q ss_pred HHHHHHHHHHHHhhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCceeEEe-cCcEEecCCceeec
Q 041145 292 RKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRASKWWFW-SGGIEFEDKSKLEA 370 (522)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~i~~~~-~~~v~~~dG~~~~~ 370 (522)
.++ .| ..++.+ ...|.++. +++|+|+||+++++
T Consensus 244 --------------~~~------~~-------------------------~~~v~~-~~~I~~~~~~g~V~f~DG~~~~~ 277 (461)
T PLN02172 244 --------------KLP------VP-------------------------QNNLWM-HSEIDTAHEDGSIVFKNGKVVYA 277 (461)
T ss_pred --------------cCc------CC-------------------------CCceEE-CCcccceecCCeEEECCCCCccC
Confidence 000 00 111111 11233333 34599999999999
Q ss_pred cEEEEeccCCCCccccccCCCcccccccCcccccccccccccCCC-CceeEeecccccchhhHHHHHHHHHHHHhcCCCC
Q 041145 371 DVVLLATGYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLI-PNMAFVGYIETVSNLQIAEIRCKWLARLADQKFK 449 (522)
Q Consensus 371 D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-pni~~vG~~~~~~~~~~ae~qa~~~a~~l~g~~~ 449 (522)
|.||+||||++++++. .. ...+..+++...+||++++++.. |||+|+|++.....++++|+||+|+|++++|+.+
T Consensus 278 D~Ii~~TGy~~~~pfL---~~-~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 278 DTIVHCTGYKYHFPFL---ET-NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVT 353 (461)
T ss_pred CEEEECCcCCcccccc---Cc-ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCC
Confidence 9999999999996543 21 11122234455579999999975 9999999987777789999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccccC--ccceeeccccchHHHhhcCCCCcc
Q 041145 450 LPAVEKMLEQTTKEVEIMKQTTRFFKR--HCISTFSINHSDEICEEMGWKSWR 500 (522)
Q Consensus 450 lp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~y~d~L~~~~g~~~~~ 500 (522)
||+.++|+++++++.+.+.... ..++ |.+...+..|+|+|++++|++|..
T Consensus 354 LPs~~~m~~~~~~~~~~~~~~g-~~~r~~h~~~~~~~~y~~~la~~~g~~~~~ 405 (461)
T PLN02172 354 LPSEDKMMEDINAWYASLEALG-IPKRYTHKLGKIQSEYLNWIAEECGCPLVE 405 (461)
T ss_pred CcCHHHHHHHHHHHHHHHHhcC-CCCceeEEcCccHHHHHHHHHHHhCCCCCH
Confidence 9999999999988776654332 1222 444446789999999999998765
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-50 Score=408.33 Aligned_cols=383 Identities=28% Similarity=0.466 Sum_probs=298.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC--------c-cCcccccCCCCCcccCCCCCCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC--------S-FNSTKLQTPRCDFEFSDYPWPERDDAS 79 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (522)
.++|||||||+|||++|+.| .|++++||||.+++||+|... . |.+++++.|+..|.|+++|+++...+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 67999999999999999999 899999999999999999975 4 999999999999999999999986466
Q ss_pred CCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEEEECEE
Q 041145 80 FPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWYGFELL 158 (522)
Q Consensus 80 ~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~d~v 158 (522)
|+++.++.+||+.||++|+|.+.|+|+++|..++... ++.|.|.+.++.+ .....||.|
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~--------------------~gkW~V~~~~~~~~~~~~ifd~V 145 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID--------------------KGKWRVTTKDNGTQIEEEIFDAV 145 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc--------------------CCceeEEEecCCcceeEEEeeEE
Confidence 7999999999999999999999999999999998722 2689999987654 467899999
Q ss_pred EEeeeccCCCCCCCCCCCCCC--ccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 041145 159 VMCIGKFGDIPRMPAFPANKG--EEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQ 236 (522)
Q Consensus 159 ViAtG~~s~~p~~p~~p~~~G--~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~ 236 (522)
|+|||++ ..|++|.+| | ++.|.|+++||++|+. .+.+++|+|+|||+|+||+|++.+++..+.
T Consensus 146 vVctGh~-~~P~~P~~~---g~~~~~f~G~~iHS~~Yk~------~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak----- 210 (448)
T KOG1399|consen 146 VVCTGHY-VEPRIPQIP---GPGIESFKGKIIHSHDYKS------PEKFRDKVVLVVGCGNSGMDISLDLLRVAK----- 210 (448)
T ss_pred EEcccCc-CCCCCCcCC---CCchhhcCCcceehhhccC------cccccCceEEEECCCccHHHHHHHHHHhcc-----
Confidence 9999999 789999998 7 7799999999999998 567999999999999999999999998764
Q ss_pred cEEEEeecC-ceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCC
Q 041145 237 PCTMVIRTL-HWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLK 315 (522)
Q Consensus 237 ~Vt~v~R~~-~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 315 (522)
+|++..+++ .-..++.
T Consensus 211 ~v~~~~~~~~~~~~~~~--------------------------------------------------------------- 227 (448)
T KOG1399|consen 211 EVHLSVVSPKVHVEPPE--------------------------------------------------------------- 227 (448)
T ss_pred Ccceeeecccccccccc---------------------------------------------------------------
Confidence 487776521 0000000
Q ss_pred CCCccccccccccccccCcchhhhcccCcEEEEeCceeEEecCcEEec-CCceeeccEEEEeccCCCCccccccCCCccc
Q 041145 316 PDHPFEEDYASCQMAILPENFFSEAEKGNILFKRASKWWFWSGGIEFE-DKSKLEADVVLLATGYDGKKKLQSILPKPFS 394 (522)
Q Consensus 316 p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~i~~~~~~~v~~~-dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~ 394 (522)
....++..+.. |..+++++..+. +|....+|.||+||||...+++. .....
T Consensus 228 ------------------------~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl---~~~~~ 279 (448)
T KOG1399|consen 228 ------------------------ILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFL---ETLGL 279 (448)
T ss_pred ------------------------eeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeeccee---ccCCc
Confidence 00122333333 778888885554 55567799999999999986443 22222
Q ss_pred ccccCcccccccccccccCCC-CceeEeecccccchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 041145 395 SLLADSSGIMPLYRGTIHPLI-PNMAFVGYIETVSNLQIAEIRCKWLARLADQKFKLPAVEKMLEQTTKEVEIMKQTTRF 473 (522)
Q Consensus 395 ~~~~~~~~~~~l~~~~~~~~~-pni~~vG~~~~~~~~~~ae~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~ 473 (522)
....++...++|++++++.+ |.+.++|.......++..|.|++|+++++.|+.++|+.++|..+.....+.+....--
T Consensus 280 -~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~ 358 (448)
T KOG1399|consen 280 -GTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLA 358 (448)
T ss_pred -eeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhccc
Confidence 23345556789999998775 5667777555445689999999999999999999999999999887766554433211
Q ss_pred ccCcccee---eccccchHHHhhcCCCCccchhhHhhhcccCChhhhcCC
Q 041145 474 FKRHCIST---FSINHSDEICEEMGWKSWRKNNWISEAFMPYSSQDYQEA 520 (522)
Q Consensus 474 ~~~~~~~~---~~~~y~d~L~~~~g~~~~~~~~~~~~~~~~~~~~~y~~~ 520 (522)
..+++... ....|...++...|++..-.-..+.-|++|++++.|+..
T Consensus 359 ~~~~t~~~~~~~l~~y~~~~~~~~g~~~~~~~~~~~~~~g~~~~y~~~~~ 408 (448)
T KOG1399|consen 359 TGRHTHVPDYDELAEYINWFADLCGFPKTEPWLAKEGWKGPCGLYAYGLT 408 (448)
T ss_pred ccccccccchHHHHHHhhhhhhhcCCCCcchHHhhhhccCccceeEeecc
Confidence 12333322 345677777777777665543334467899999888753
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-44 Score=364.65 Aligned_cols=392 Identities=25% Similarity=0.356 Sum_probs=283.5
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCC-cEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHH
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYD-PLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVE 85 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
++..+|+|||||+|||++|++| .|.+ ++|||+++.+||+|+.++||++++++|+..++|+++|++ +. ..++...+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~-~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WD-EAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-Cc-ccCCCccc
Confidence 3467999999999999999999 8888 999999999999999999999999999999999999998 33 67888888
Q ss_pred HHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeecc
Q 041145 86 LLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 86 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
+.+|+..++++|++...++|++.|..+++ +++ .+.|+|+++++...+ +.||+||+|||.+
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~--~~~-----------------~~~w~V~~~~~~~~~-~~a~~vV~ATG~~ 143 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADW--DED-----------------TKRWTVTTSDGGTGE-LTADFVVVATGHL 143 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEe--cCC-----------------CCeEEEEEcCCCeee-EecCEEEEeecCC
Confidence 99999999999999999999999999888 443 579999998876333 7899999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 166 GDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 166 s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+.|++|.|+ |+++|.|.++||++|.+ .++++||||+|||+|+||+|+|.+|++.+. +||+++|+|
T Consensus 144 -~~P~iP~~~---G~~~f~g~~~HS~~~~~------~~~~~GKrV~VIG~GaSA~di~~~l~~~ga-----~vt~~qRs~ 208 (443)
T COG2072 144 -SEPYIPDFA---GLDEFKGRILHSADWPN------PEDLRGKRVLVIGAGASAVDIAPELAEVGA-----SVTLSQRSP 208 (443)
T ss_pred -CCCCCCCCC---CccCCCceEEchhcCCC------ccccCCCeEEEECCCccHHHHHHHHHhcCC-----eeEEEecCC
Confidence 899999999 99999999999999998 567999999999999999999999999864 599999999
Q ss_pred ceeecCCCCCC-cchHHHHHhHhhhhccCCCCchhHHHHHh---hh--hhhhHHHHHHHHHHHHhhcC--CcccCCCCCC
Q 041145 246 HWTLPSYRIWG-LPFFLFYSTRSSQFLHPRPNLGFLRTFLC---SI--LSPMRKAISKFIESYLVWKL--PLVKFGLKPD 317 (522)
Q Consensus 246 ~~~~p~~~~~~-~p~~~~~~~r~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~l~p~ 317 (522)
.|++|...... .+........+........ ..+...... .. ...............+.... ......+.|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 287 (443)
T COG2072 209 PHILPKPLLGEEVGGRLALRRALPAGWALRR-GRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPD 287 (443)
T ss_pred CceecccccccchHHHHHHhhhCccceehhh-hhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCC
Confidence 99999876321 1111100000000000000 000000000 00 00011111111222221111 1112223343
Q ss_pred CccccccccccccccCcchhhhcccCcEEEEeCceeEEecCcEEecCCceeeccEEEEeccCCCCccccccCCCcccccc
Q 041145 318 HPFEEDYASCQMAILPENFFSEAEKGNILFKRASKWWFWSGGIEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLL 397 (522)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~ 397 (522)
+.. .|++..++..+++.+..+++.+++..+..+.+.++..++|.+++.|+++.+||+..+. +.........
T Consensus 288 ~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~----~~~~~~~~~~ 358 (443)
T COG2072 288 YAP-----GDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDAND----LSGAAGGYGG 358 (443)
T ss_pred CCc-----cccccccccchhhhhhhcccceeeccccccCCcceecCCCccccceEEEecCCCchhh----eeeecccccc
Confidence 322 3444566778899999999999999898888888888888889999999999999741 0111111111
Q ss_pred cC-cccccccccccccCCCCceeEeecccccch----hhHHHHHHHHHHHHhcCC
Q 041145 398 AD-SSGIMPLYRGTIHPLIPNMAFVGYIETVSN----LQIAEIRCKWLARLADQK 447 (522)
Q Consensus 398 ~~-~~~~~~l~~~~~~~~~pni~~vG~~~~~~~----~~~ae~qa~~~a~~l~g~ 447 (522)
.. .......|+++...+.||+++++....... ...++.+.++++..+.-.
T Consensus 359 ~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (443)
T COG2072 359 DPWDKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRAELRITLLADAIAHG 413 (443)
T ss_pred ccccccccceeccccccCCCceEEecCccCCcccchhHHhhhhhhhHHHHHHHhc
Confidence 11 123345688888899999999986654332 246778888888777533
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=1.3e-29 Score=249.93 Aligned_cols=282 Identities=21% Similarity=0.272 Sum_probs=197.9
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (522)
+||+|||||++|+++|..| .|++|+|||+.+ .||.|.... ....++.+ +......++..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~ 62 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF-------PEGISGPELMEK 62 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC-------CCCCChHHHHHH
Confidence 4899999999999999999 899999999876 777665311 00111111 122455689999
Q ss_pred HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCCC
Q 041145 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIP 169 (522)
Q Consensus 90 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p 169 (522)
++.+++++++ .+.+ ++|++++. + ...|.|++.++. ++.||+||+||| ..|
T Consensus 63 l~~~~~~~gv--~~~~-~~v~~v~~--~-------------------~~~~~v~~~~~~---~~~~d~liiAtG---~~~ 112 (300)
T TIGR01292 63 MKEQAVKFGA--EIIY-EEVIKVDL--S-------------------DRPFKVKTGDGK---EYTAKAVIIATG---ASA 112 (300)
T ss_pred HHHHHHHcCC--eEEE-EEEEEEEe--c-------------------CCeeEEEeCCCC---EEEeCEEEECCC---CCc
Confidence 9999999987 5666 88999887 3 346777776543 799999999999 457
Q ss_pred CCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCceee
Q 041145 170 RMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWTL 249 (522)
Q Consensus 170 ~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~~ 249 (522)
+.|.+| |.+.|.+..+|...+.+ ....++++|+|||+|.+|+|+|..+++.+. +|+++.|.+.+..
T Consensus 113 ~~~~i~---g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~-----~V~~v~~~~~~~~ 178 (300)
T TIGR01292 113 RKLGIP---GEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDSAIEEALYLTRIAK-----KVTLVHRRDKFRA 178 (300)
T ss_pred ccCCCC---ChhhcCCccEEEeeecC------hhhcCCCEEEEECCChHHHHHHHHHHhhcC-----EEEEEEeCcccCc
Confidence 888889 88777666565544433 234678999999999999999999998754 5999999874210
Q ss_pred cCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCccccccccccc
Q 041145 250 PSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQM 329 (522)
Q Consensus 250 p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 329 (522)
.
T Consensus 179 ~------------------------------------------------------------------------------- 179 (300)
T TIGR01292 179 E------------------------------------------------------------------------------- 179 (300)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccCcchhhhccc-CcEEEEeCc-eeEEecCc----EEec---CC--ceeeccEEEEeccCCCCccccccCCCccccccc
Q 041145 330 AILPENFFSEAEK-GNILFKRAS-KWWFWSGG----IEFE---DK--SKLEADVVLLATGYDGKKKLQSILPKPFSSLLA 398 (522)
Q Consensus 330 ~~~~~~~~~~l~~-~~v~v~~~~-i~~~~~~~----v~~~---dG--~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~ 398 (522)
+.+.+.+++ .+|+++.+. +.++++++ +++. +| .++++|.||+|||++++..+.. . . +..
T Consensus 180 ----~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~---~-~--~~~ 249 (300)
T TIGR01292 180 ----KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLK---G-L--LEL 249 (300)
T ss_pred ----HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHH---H-h--hee
Confidence 000112223 367777665 66666542 4443 24 4589999999999999853321 1 1 111
Q ss_pred CcccccccccccccCCCCceeEeecccc--cchhhHHHHHHHHHHHHhc
Q 041145 399 DSSGIMPLYRGTIHPLIPNMAFVGYIET--VSNLQIAEIRCKWLARLAD 445 (522)
Q Consensus 399 ~~~~~~~l~~~~~~~~~pni~~vG~~~~--~~~~~~ae~qa~~~a~~l~ 445 (522)
++++.+.++.. +.+++||+|++|...+ ......|..|++.+|..+.
T Consensus 250 ~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 250 DEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred cCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 34455666665 4578999999998875 3346789999999998874
No 6
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.97 E-value=2.8e-31 Score=246.46 Aligned_cols=190 Identities=35% Similarity=0.620 Sum_probs=133.9
Q ss_pred EEECCCHHHHHHHHHh--CCCC-cEEEccCCCCCcccCCCccCcccccCCCCCc---ccCCCCCCC------C-CCCCCC
Q 041145 15 GIIGAGISGIATAKQL--RHYD-PLVFEATNSIGGVWKHCSFNSTKLQTPRCDF---EFSDYPWPE------R-DDASFP 81 (522)
Q Consensus 15 vIIGaG~aGl~~a~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~---~~~~~~~~~------~-~~~~~~ 81 (522)
+|||||++||++|..| .|++ ++|||+++.+||.|.. .++...+..|.... .++++.... + ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999 8998 9999999999999986 44454554444322 222221110 0 015678
Q ss_pred ChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEe
Q 041145 82 SHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMC 161 (522)
Q Consensus 82 ~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViA 161 (522)
+.+++.+|++.+++++++ .++++++|+++++ + .++|.|+++++. ++.||+||+|
T Consensus 80 ~~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~--~-------------------~~~w~v~~~~~~---~~~a~~VVlA 133 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGL--EIRFNTRVESVRR--D-------------------GDGWTVTTRDGR---TIRADRVVLA 133 (203)
T ss_dssp BHHHHHHHHHHHHHHTTG--GEETS--EEEEEE--E-------------------TTTEEEEETTS----EEEEEEEEE-
T ss_pred CHHHHHHHHHHHHhhcCc--ccccCCEEEEEEE--e-------------------ccEEEEEEEecc---eeeeeeEEEe
Confidence 999999999999999999 5999999999998 3 345999998773 7889999999
Q ss_pred eeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 041145 162 IGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMV 241 (522)
Q Consensus 162 tG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v 241 (522)
||.. +.|+.|++| | ..+. ..+|+.++.+ ...+++|+|+|||+|.||+|+|.+|++.+. +||++
T Consensus 134 tG~~-~~p~~p~~~---g-~~~~-~~~h~~~~~~------~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~-----~V~~~ 196 (203)
T PF13738_consen 134 TGHY-SHPRIPDIP---G-SAFR-PIIHSADWRD------PEDFKGKRVVVVGGGNSAVDIAYALAKAGK-----SVTLV 196 (203)
T ss_dssp --SS-CSB---S-T---T-GGCS-EEEEGGG-ST------TGGCTTSEEEEE--SHHHHHHHHHHTTTCS-----EEEEE
T ss_pred eecc-CCCCccccc---c-cccc-ceEehhhcCC------hhhcCCCcEEEEcChHHHHHHHHHHHhhCC-----EEEEE
Confidence 9988 789999999 8 2333 7899999987 456899999999999999999999999864 69999
Q ss_pred eecCcee
Q 041145 242 IRTLHWT 248 (522)
Q Consensus 242 ~R~~~~~ 248 (522)
+|+|.|+
T Consensus 197 ~R~~~~~ 203 (203)
T PF13738_consen 197 TRSPIWY 203 (203)
T ss_dssp ESS----
T ss_pred ecCCCCC
Confidence 9999874
No 7
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=1.5e-29 Score=256.44 Aligned_cols=316 Identities=19% Similarity=0.145 Sum_probs=205.7
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcccC-----CCCCCCCCCCCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEFS-----DYPWPERDDASF 80 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 80 (522)
|..+|++|||||++|..+|.++ .|.+|.++|+...+||+|.+. |.|+..+......+... .+.+.... . -
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~-~-~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEV-P-K 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCC-C-C
Confidence 3468999999999999999999 888899999998899999874 66666554333322111 11111111 1 2
Q ss_pred CChHHHHHHHHHHHHhcCCcCceEece-EEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEE
Q 041145 81 PSHVELLDYLHGYAVHFDVLKYIKFNS-KVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLV 159 (522)
Q Consensus 81 ~~~~~~~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vV 159 (522)
.+..++.+..+...+...-...-.+.. .|.-+.-.+.. .+..+|.+... +.+++++|++|
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f------------------~~~~~v~V~~~-~~~~~~a~~ii 140 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARF------------------VDPHTVEVTGE-DKETITADNII 140 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEE------------------CCCCEEEEcCC-CceEEEeCEEE
Confidence 344445544444333221100000111 22222110000 11235666553 33589999999
Q ss_pred EeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 041145 160 MCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCT 239 (522)
Q Consensus 160 iAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt 239 (522)
|||| +.|..|++| |++.- .++.+.+...+ . .-+|+++|||+|.+|+|+|..++..+.+ ||
T Consensus 141 IATG---S~p~~~~~~---~~~~~--~~~~s~~~l~~------~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~-----VT 200 (454)
T COG1249 141 IATG---SRPRIPPGP---GIDGA--RILDSSDALFL------L-ELPKSLVIVGGGYIGLEFASVFAALGSK-----VT 200 (454)
T ss_pred EcCC---CCCcCCCCC---CCCCC--eEEechhhccc------c-cCCCEEEEECCCHHHHHHHHHHHHcCCc-----EE
Confidence 9999 679999888 76542 24445443221 1 4579999999999999999999999765 99
Q ss_pred EEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCc
Q 041145 240 MVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHP 319 (522)
Q Consensus 240 ~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 319 (522)
++.|.+. ++|..+ ..
T Consensus 201 iie~~~~-iLp~~D---------------------------------------~e------------------------- 215 (454)
T COG1249 201 VVERGDR-ILPGED---------------------------------------PE------------------------- 215 (454)
T ss_pred EEecCCC-CCCcCC---------------------------------------HH-------------------------
Confidence 9999987 333332 11
Q ss_pred cccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC----cEEecCCc--eeeccEEEEeccCCCCccccccCCCc
Q 041145 320 FEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG----GIEFEDKS--KLEADVVLLATGYDGKKKLQSILPKP 392 (522)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~----~v~~~dG~--~~~~D~VI~ATG~~~~~~l~~~~~~~ 392 (522)
+++.+.+.+++++++++.+. +.+++.+ .+.+++|+ ++++|.|++|||.+|+.. -+..+
T Consensus 216 ------------i~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~---~LgLe 280 (454)
T COG1249 216 ------------ISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD---GLGLE 280 (454)
T ss_pred ------------HHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC---CCChh
Confidence 22233344557778888887 6666543 26777887 688999999999999942 12222
Q ss_pred ccccccCcccccccccccccCCCCceeEeecccc-cchhhHHHHHHHHHHHHhcC
Q 041145 393 FSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET-VSNLQIAEIRCKWLARLADQ 446 (522)
Q Consensus 393 ~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~-~~~~~~ae~qa~~~a~~l~g 446 (522)
-.++..++++.+.++ ..+.++.||||++|++.+ +...+.|..|++.+|..+.|
T Consensus 281 ~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 281 NAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred hcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 223433556777788 677788999999999844 44568999999999999987
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.97 E-value=2.5e-29 Score=248.31 Aligned_cols=293 Identities=19% Similarity=0.250 Sum_probs=201.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVEL 86 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (522)
+++|||||||++|+.+|+.| . +.+++++|+++.. .+..+.- .......+..++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h-------l~~plL~----------------eva~g~l~~~~i 59 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH-------LFTPLLY----------------EVATGTLSESEI 59 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc-------ccchhhh----------------hhhcCCCChhhe
Confidence 56899999999999999999 3 3789999998542 1111110 000223445555
Q ss_pred HHHHHHHHHhcCCcCceEe-ceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeecc
Q 041145 87 LDYLHGYAVHFDVLKYIKF-NSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 87 ~~yl~~~~~~~~l~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
..-++..+++.+ .+.| ..+|++|+. +.. +|++.+.. .+.||+||+|+|
T Consensus 60 ~~p~~~~~~~~~---~v~~~~~~V~~ID~--~~k---------------------~V~~~~~~---~i~YD~LVvalG-- 108 (405)
T COG1252 60 AIPLRALLRKSG---NVQFVQGEVTDIDR--DAK---------------------KVTLADLG---EISYDYLVVALG-- 108 (405)
T ss_pred eccHHHHhcccC---ceEEEEEEEEEEcc--cCC---------------------EEEeCCCc---cccccEEEEecC--
Confidence 556666666444 2444 458999987 422 58887743 799999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccCCCchhh-----------hhhcc----CCCeEEEECCCCCHHHHHHHHHHhc
Q 041145 166 GDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEA-----------ATELL----EGKKVAIIGYRKSAIDLAVECAEAN 230 (522)
Q Consensus 166 s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~-----------~~~~~----~~k~V~VIG~G~sg~dia~~l~~~~ 230 (522)
+.++.+.+| |..++. ...++.++.. ..... +-..|+|||||+||+|+|.+|++..
T Consensus 109 -s~~~~fgi~---G~~E~a------~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~ 178 (405)
T COG1252 109 -SETNYFGIP---GAAEYA------FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERL 178 (405)
T ss_pred -CcCCcCCCC---CHHHhC------CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHH
Confidence 568888899 877643 2222222210 00001 1137999999999999999999864
Q ss_pred CC--------CCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHH
Q 041145 231 QG--------PNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESY 302 (522)
Q Consensus 231 ~~--------~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (522)
+. +..-+|+++.+.|. ++|.+. ..
T Consensus 179 ~~l~~~~~~~~~~~~V~LVea~p~-ILp~~~---------------------------------------~~-------- 210 (405)
T COG1252 179 HRLLKKFRVDPSELRVILVEAGPR-ILPMFP---------------------------------------PK-------- 210 (405)
T ss_pred HHHhhhhcCCccccEEEEEccCch-hccCCC---------------------------------------HH--------
Confidence 32 01126888888876 333321 01
Q ss_pred HhhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCcEEecCCce-eeccEEEEeccCC
Q 041145 303 LVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGGIEFEDKSK-LEADVVLLATGYD 380 (522)
Q Consensus 303 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~v~~~dG~~-~~~D~VI~ATG~~ 380 (522)
+++...+.+++.+|+++.+. |+++++++|++++|.+ +++|.||||+|.+
T Consensus 211 -----------------------------l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 211 -----------------------------LSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred -----------------------------HHHHHHHHHHHCCCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCc
Confidence 11222345668899999998 9999999999999985 9999999999999
Q ss_pred CCccccccCCCcccccccCcccccccccccccCCCCceeEeecccc-------cchhhHHHHHHHHHHHHhcCCCC
Q 041145 381 GKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET-------VSNLQIAEIRCKWLARLADQKFK 449 (522)
Q Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~-------~~~~~~ae~qa~~~a~~l~g~~~ 449 (522)
++..+..+ .+...+..+.+.+...+..+++||||++|++.. +.+.+.|++||+++|++|..+..
T Consensus 262 a~~~~~~l-----~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 262 ASPLLKDL-----SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CChhhhhc-----ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 99533221 122224567788889999999999999996543 34468899999999999865543
No 9
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=2.8e-28 Score=242.51 Aligned_cols=285 Identities=19% Similarity=0.270 Sum_probs=193.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||||||+||..| .|+++++||+. ..||.+.... . +.++|. . +...+..++.+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~---~~~~~~---~-~~~~~~~~~~~ 67 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------E---VENWPG---D-PNDLTGPLLME 67 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------e---ECCCCC---C-CCCCCHHHHHH
Confidence 46999999999999999999 89999999964 6788664310 0 111111 0 23456778899
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++..+++.++. .+.++ +|+.++. . .+.|.++...+ .+.||+||+||| +.
T Consensus 68 ~~~~~~~~~~~--~~~~~-~v~~v~~--~-------------------~~~~~v~~~~~----~~~~d~vilAtG---~~ 116 (321)
T PRK10262 68 RMHEHATKFET--EIIFD-HINKVDL--Q-------------------NRPFRLTGDSG----EYTCDALIIATG---AS 116 (321)
T ss_pred HHHHHHHHCCC--EEEee-EEEEEEe--c-------------------CCeEEEEecCC----EEEECEEEECCC---CC
Confidence 99999988876 45544 5667765 2 34566654322 589999999999 45
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
|+.|++| |.+.|.++.+|+..+.+ .....+|+|+|||+|.+|+|+|..|++.+. +||++.|.+.+.
T Consensus 117 ~~~~~i~---g~~~~~~~~v~~~~~~~------~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~-----~Vtlv~~~~~~~ 182 (321)
T PRK10262 117 ARYLGLP---SEEAFKGRGVSACATCD------GFFYRNQKVAVIGGGNTAVEEALYLSNIAS-----EVHLIHRRDGFR 182 (321)
T ss_pred CCCCCCC---CHHHcCCCcEEEeecCC------HHHcCCCEEEEECCCHHHHHHHHHHHhhCC-----EEEEEEECCccC
Confidence 8888999 98888888788776654 334689999999999999999999998854 599999987521
Q ss_pred ecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccccc
Q 041145 249 LPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQ 328 (522)
Q Consensus 249 ~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 328 (522)
.. + .
T Consensus 183 --~~-----~-----------------------------------~---------------------------------- 186 (321)
T PRK10262 183 --AE-----K-----------------------------------I---------------------------------- 186 (321)
T ss_pred --CC-----H-----------------------------------H----------------------------------
Confidence 00 0 0
Q ss_pred ccccCcchhhhcccCcEEEEeCc-eeEEecC-----cEEecCC------ceeeccEEEEeccCCCCccccccCCCccccc
Q 041145 329 MAILPENFFSEAEKGNILFKRAS-KWWFWSG-----GIEFEDK------SKLEADVVLLATGYDGKKKLQSILPKPFSSL 396 (522)
Q Consensus 329 ~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~-----~v~~~dG------~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~ 396 (522)
+.+.+.+.+++.+|+++.+. +.+++++ +|+++++ +++++|.||+|+|++++..+.. .. +
T Consensus 187 ---~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~---~~---l 257 (321)
T PRK10262 187 ---LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE---GQ---L 257 (321)
T ss_pred ---HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhh---cc---c
Confidence 00111244567889988876 7788765 3666543 3589999999999999964321 11 1
Q ss_pred ccCcccccccccc----cccCCCCceeEeecccccch--hhHHHHHHHHHHHHh
Q 041145 397 LADSSGIMPLYRG----TIHPLIPNMAFVGYIETVSN--LQIAEIRCKWLARLA 444 (522)
Q Consensus 397 ~~~~~~~~~l~~~----~~~~~~pni~~vG~~~~~~~--~~~ae~qa~~~a~~l 444 (522)
. ..++.+.+..+ .+.++.||||++|++.+... ...|-.++..+|..+
T Consensus 258 ~-~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~ 310 (321)
T PRK10262 258 E-LENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDA 310 (321)
T ss_pred c-ccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHH
Confidence 1 12233333331 24678999999998864321 223444454444433
No 10
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.96 E-value=4.2e-28 Score=251.24 Aligned_cols=300 Identities=21% Similarity=0.194 Sum_probs=187.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCCCCCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPERDDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 83 (522)
.+||+||||||+|++||..+ .|.+|+|||+. .+||+|.+. +.|+..+......+. ...+.++... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNL-ENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCC-cCccCH
Confidence 67999999999999999999 89999999995 699998753 556543222211111 1112221110 011233
Q ss_pred HHHHHHHHHH-----------HHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 84 VELLDYLHGY-----------AVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 84 ~~~~~yl~~~-----------~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
.++.++..++ .++.++ .+..++.+ .. + .. +|.+. + ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~----~~-~-------------------~~--~v~v~-~---~~ 127 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHAR----FT-K-------------------DG--TVEVN-G---RD 127 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE----Ec-c-------------------CC--EEEEC-C---EE
Confidence 3333332222 233333 23333322 10 1 11 35542 2 26
Q ss_pred EEECEEEEeeeccCCCCCCC-CCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcC
Q 041145 153 YGFELLVMCIGKFGDIPRMP-AFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQ 231 (522)
Q Consensus 153 ~~~d~vViAtG~~s~~p~~p-~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~ 231 (522)
+.||+||+||| +.|+.| ++| |.+. .+++.++..+. ..+++|+|||+|.+|+|+|..++..+.
T Consensus 128 ~~~d~vIiAtG---s~p~~p~~i~---g~~~----~~~~~~~~~~~-------~~~~~vvIIGgG~iG~E~A~~l~~~g~ 190 (450)
T TIGR01421 128 YTAPHILIATG---GKPSFPENIP---GAEL----GTDSDGFFALE-------ELPKRVVIVGAGYIAVELAGVLHGLGS 190 (450)
T ss_pred EEeCEEEEecC---CCCCCCCCCC---CCce----eEcHHHhhCcc-------ccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 89999999999 568888 788 8652 12333332211 236899999999999999999999865
Q ss_pred CCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccc
Q 041145 232 GPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVK 311 (522)
Q Consensus 232 ~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (522)
+||++.|.+..+ +..+ ..
T Consensus 191 -----~Vtli~~~~~il-~~~d---------------------------------------~~----------------- 208 (450)
T TIGR01421 191 -----ETHLVIRHERVL-RSFD---------------------------------------SM----------------- 208 (450)
T ss_pred -----cEEEEecCCCCC-cccC---------------------------------------HH-----------------
Confidence 499999987632 2221 00
Q ss_pred CCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC-----cEEecCC-ceeeccEEEEeccCCCCcc
Q 041145 312 FGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG-----GIEFEDK-SKLEADVVLLATGYDGKKK 384 (522)
Q Consensus 312 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~-----~v~~~dG-~~~~~D~VI~ATG~~~~~~ 384 (522)
+.+.+.+.+++.+|+++.+. +.+++.+ .+++++| +++++|.||+|+|++|+..
T Consensus 209 --------------------~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 209 --------------------ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred --------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 01112233446678888776 6777542 2667788 5699999999999999953
Q ss_pred ccccCCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCC
Q 041145 385 LQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 385 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~ 447 (522)
+. .....++..++++.+.+... +.++.||||++|++.+.. ..+.|..||+.+|..+.|.
T Consensus 269 ~l---~l~~~g~~~~~~G~i~vd~~-~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 269 GL---GLENVGIKLNEKGQIIVDEY-QNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred cC---CccccCcEECCCCcEEeCCC-CcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 21 11111222234455556555 457899999999876543 4688999999999999853
No 11
>PLN02507 glutathione reductase
Probab=99.96 E-value=1.1e-27 Score=250.50 Aligned_cols=309 Identities=17% Similarity=0.143 Sum_probs=191.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEcc---------CCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEA---------TNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPE 74 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~---------~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~ 74 (522)
.+||+|||||++|+.+|..+ .|.+|+|||+ ...+||+|.+. ++|+..+......+. ...+.+..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 57999999999999999999 8999999996 35699999763 677655432221111 01111111
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCC-------cCceE-eceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEe
Q 041145 75 RDDASFPSHVELLDYLHGYAVHFDV-------LKYIK-FNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVET 146 (522)
Q Consensus 75 ~~~~~~~~~~~~~~yl~~~~~~~~l-------~~~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (522)
.. ..-....++.++.....+++.- ...+. +..++..++ ...+.|+..+
T Consensus 105 ~~-~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd-----------------------~~~v~V~~~~ 160 (499)
T PLN02507 105 NE-KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVG-----------------------PNEVEVTQLD 160 (499)
T ss_pred CC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEec-----------------------CCEEEEEeCC
Confidence 00 1123444444443333332210 00111 112222222 2345555444
Q ss_pred CCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHH
Q 041145 147 NQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226 (522)
Q Consensus 147 ~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l 226 (522)
++ ..++.||+|||||| +.|..|++| |.+. ..++.+...+ ...+|+|+|||+|.+|+|+|..+
T Consensus 161 g~-~~~~~~d~LIIATG---s~p~~p~ip---G~~~----~~~~~~~~~l-------~~~~k~vvVIGgG~ig~E~A~~l 222 (499)
T PLN02507 161 GT-KLRYTAKHILIATG---SRAQRPNIP---GKEL----AITSDEALSL-------EELPKRAVVLGGGYIAVEFASIW 222 (499)
T ss_pred Cc-EEEEEcCEEEEecC---CCCCCCCCC---Cccc----eechHHhhhh-------hhcCCeEEEECCcHHHHHHHHHH
Confidence 32 23588999999999 568888888 8643 1233322221 12368999999999999999999
Q ss_pred HHhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhc
Q 041145 227 AEANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWK 306 (522)
Q Consensus 227 ~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (522)
+..+. +||++.|.+.. ++..+ ..+.
T Consensus 223 ~~~G~-----~Vtli~~~~~~-l~~~d---------------------------------------~~~~---------- 247 (499)
T PLN02507 223 RGMGA-----TVDLFFRKELP-LRGFD---------------------------------------DEMR---------- 247 (499)
T ss_pred HHcCC-----eEEEEEecCCc-CcccC---------------------------------------HHHH----------
Confidence 98865 59999998752 12111 0011
Q ss_pred CCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCC
Q 041145 307 LPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDG 381 (522)
Q Consensus 307 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~ 381 (522)
..+.+.+++.+|+++.+. +.+++. ++ +.+.+|+++++|.||+|+|+++
T Consensus 248 ---------------------------~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 248 ---------------------------AVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred ---------------------------HHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCC
Confidence 111233446678888876 777753 33 5667888899999999999999
Q ss_pred CccccccCCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCC
Q 041145 382 KKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~ 447 (522)
+..+.. ....++..++++.+.+..++. ++.||||++|++.+.. ..+.|..|++.++..+.|.
T Consensus 301 n~~~l~---l~~~gl~~~~~G~I~Vd~~~~-Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 301 NTKRLN---LEAVGVELDKAGAVKVDEYSR-TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CCCCCC---chhhCcEECCCCcEecCCCCc-CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 953211 111122223455566666654 6999999999887643 3578999999999999865
No 12
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.96 E-value=2.4e-27 Score=247.66 Aligned_cols=307 Identities=17% Similarity=0.152 Sum_probs=192.9
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCc-------ccCCCCCCCCCCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDF-------EFSDYPWPERDDA 78 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 78 (522)
|+.+||+|||||++|+++|..| .|.+|+|||+.+.+||+|.+. +.|+..+......+ .|..++. .
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~-----~ 77 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRV-----K 77 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCC-----c
Confidence 3467999999999999999999 899999999988999998653 45544332211110 1111111 1
Q ss_pred CCCChHHHHHHHHH-----------HHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeC
Q 041145 79 SFPSHVELLDYLHG-----------YAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETN 147 (522)
Q Consensus 79 ~~~~~~~~~~yl~~-----------~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (522)
...+..++.++.+. ..++.++ .+..+ ++..++ ...+.|...++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~~~-----------------------~~~~~v~~~~g 131 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQG-RARFVD-----------------------PHTVEVECPDG 131 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEE-EEEEec-----------------------CCEEEEEeCCC
Confidence 12344444444333 2333333 22222 222221 23344544332
Q ss_pred CeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHH
Q 041145 148 QAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECA 227 (522)
Q Consensus 148 ~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~ 227 (522)
+ ..++.||+||+||| +.|..|+++ +.+. ..++++.+.... ...+|+|+|||+|.+|+|+|..++
T Consensus 132 ~-~~~~~~d~lviATG---s~p~~p~~~---~~~~--~~v~~~~~~~~~-------~~~~~~v~IiGgG~~g~E~A~~l~ 195 (461)
T PRK05249 132 E-VETLTADKIVIATG---SRPYRPPDV---DFDH--PRIYDSDSILSL-------DHLPRSLIIYGAGVIGCEYASIFA 195 (461)
T ss_pred c-eEEEEcCEEEEcCC---CCCCCCCCC---CCCC--CeEEcHHHhhch-------hhcCCeEEEECCCHHHHHHHHHHH
Confidence 1 24689999999999 558888766 5332 234555444432 235799999999999999999999
Q ss_pred HhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 041145 228 EANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKL 307 (522)
Q Consensus 228 ~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (522)
+.+. +||++.|++.. +|..+ ..
T Consensus 196 ~~g~-----~Vtli~~~~~~-l~~~d---------------------------------------~~------------- 217 (461)
T PRK05249 196 ALGV-----KVTLINTRDRL-LSFLD---------------------------------------DE------------- 217 (461)
T ss_pred HcCC-----eEEEEecCCCc-CCcCC---------------------------------------HH-------------
Confidence 9865 49999998752 22211 00
Q ss_pred CcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEe--cCc--EEecCCceeeccEEEEeccCCCC
Q 041145 308 PLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFW--SGG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 308 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+.+.+.+.+++.+|+++.+. +.+++ +++ +.+++|+++++|.||+|+|++++
T Consensus 218 ------------------------~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 218 ------------------------ISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred ------------------------HHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 01112233445678888775 66665 333 45678888999999999999999
Q ss_pred ccccccCCCcccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhcCCC
Q 041145 383 KKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 383 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~~ 448 (522)
..+.. ....++..++.+.+.+...+ .++.||||++|++.+. ...+.|..||+.+|..+.|..
T Consensus 274 ~~~l~---l~~~g~~~~~~G~i~vd~~~-~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 336 (461)
T PRK05249 274 TDGLN---LENAGLEADSRGQLKVNENY-QTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEA 336 (461)
T ss_pred ccCCC---chhhCcEecCCCcEeeCCCc-ccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 53211 11112222345556666554 4689999999987653 335789999999999998763
No 13
>PRK06116 glutathione reductase; Validated
Probab=99.96 E-value=2.8e-27 Score=246.08 Aligned_cols=299 Identities=18% Similarity=0.184 Sum_probs=188.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc-c----CCCCCCCCCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE-F----SDYPWPERDDASFPS 82 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 82 (522)
.+||+||||||+|++||..| .|++|+|||+. .+||+|.+. +.|+..+........ + ..+.+... ..-..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT--ENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC--CCCcC
Confidence 57999999999999999999 89999999995 799998753 555543221111110 0 01111100 01122
Q ss_pred hHHHHHHH-----------HHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeE
Q 041145 83 HVELLDYL-----------HGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQ 151 (522)
Q Consensus 83 ~~~~~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (522)
..++.++. ....++.++ .+..+ +++.++. .+|++ ++ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~v~~-------------------------~~v~~-~g---~ 128 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEG-FARFVDA-------------------------HTVEV-NG---E 128 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEccC-------------------------CEEEE-CC---E
Confidence 23333322 222233333 22222 2333221 24666 33 3
Q ss_pred EEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcC
Q 041145 152 WYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQ 231 (522)
Q Consensus 152 ~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~ 231 (522)
++.||+||+||| +.|+.|++| |.+. ++++..+... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 129 ~~~~d~lViATG---s~p~~p~i~---g~~~----~~~~~~~~~~-------~~~~~~vvViGgG~~g~E~A~~l~~~g~ 191 (450)
T PRK06116 129 RYTADHILIATG---GRPSIPDIP---GAEY----GITSDGFFAL-------EELPKRVAVVGAGYIAVEFAGVLNGLGS 191 (450)
T ss_pred EEEeCEEEEecC---CCCCCCCCC---Ccce----eEchhHhhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 699999999999 568888888 8653 3444443321 1246899999999999999999998865
Q ss_pred CCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccc
Q 041145 232 GPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVK 311 (522)
Q Consensus 232 ~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (522)
+||++.|++.. ++..+ ..
T Consensus 192 -----~Vtlv~~~~~~-l~~~~---------------------------------------~~----------------- 209 (450)
T PRK06116 192 -----ETHLFVRGDAP-LRGFD---------------------------------------PD----------------- 209 (450)
T ss_pred -----eEEEEecCCCC-ccccC---------------------------------------HH-----------------
Confidence 49999988752 12110 00
Q ss_pred CCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc---EEecCCceeeccEEEEeccCCCCccc
Q 041145 312 FGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG---IEFEDKSKLEADVVLLATGYDGKKKL 385 (522)
Q Consensus 312 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~---v~~~dG~~~~~D~VI~ATG~~~~~~l 385 (522)
+...+.+.+++.+|+++.+. +.+++. ++ +.+.+|+++++|.||+|||++++...
T Consensus 210 --------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 210 --------------------IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred --------------------HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 11112234556678888776 777753 23 56778988999999999999998532
Q ss_pred cccCCCcccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhcCC
Q 041145 386 QSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~ 447 (522)
.. ....++..++++.+.+..++. ++.||||++|++.+. ...+.|..||+.+|..+.|.
T Consensus 270 l~---l~~~g~~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 270 LG---LENAGVKLNEKGYIIVDEYQN-TNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CC---chhcCceECCCCcEecCCCCC-cCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 11 111122223455566666544 689999999987643 34578999999999999874
No 14
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=244.22 Aligned_cols=309 Identities=16% Similarity=0.157 Sum_probs=193.4
Q ss_pred CcccccccccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCC
Q 041145 1 MASAQNHVQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDA 78 (522)
Q Consensus 1 m~~~~~~~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (522)
|.+.+.. |++++|||||||+||+.+|++| .+.+|+|||+++.. .|..+. +... .
T Consensus 1 ~~~~~~~-~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~-------~~~~~l---------------~~~~-~ 56 (424)
T PTZ00318 1 MRSRTAR-LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM-------LFTPLL---------------PQTT-T 56 (424)
T ss_pred CCCcccC-CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc-------chhhhH---------------HHhc-c
Confidence 4444332 3467999999999999999999 57899999998643 121110 0000 1
Q ss_pred CCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEe--C-----CeeE
Q 041145 79 SFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVET--N-----QAIQ 151 (522)
Q Consensus 79 ~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-----~~~~ 151 (522)
.....+++...++..++.++. .....+|++|+. +. . .|++.. . ++..
T Consensus 57 g~~~~~~~~~~~~~~~~~~~~---~~i~~~V~~Id~--~~-------------------~--~v~~~~~~~~~~~~~~g~ 110 (424)
T PTZ00318 57 GTLEFRSICEPVRPALAKLPN---RYLRAVVYDVDF--EE-------------------K--RVKCGVVSKSNNANVNTF 110 (424)
T ss_pred cCCChHHhHHHHHHHhccCCe---EEEEEEEEEEEc--CC-------------------C--EEEEecccccccccCCce
Confidence 112233444445555555543 234678999987 32 2 344410 0 1124
Q ss_pred EEEECEEEEeeeccCCCCCCCCCCCCCCccccC--C-ceeeccccCCC-chh---------hhhhccCCCeEEEECCCCC
Q 041145 152 WYGFELLVMCIGKFGDIPRMPAFPANKGEEIFG--G-KVLHSMDYSKL-DKE---------AATELLEGKKVAIIGYRKS 218 (522)
Q Consensus 152 ~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~--g-~~~hs~~~~~~-~~~---------~~~~~~~~k~V~VIG~G~s 218 (522)
++.||+||+||| +.|..|.+| |.++.. . .+.+...++.. ... ......+.++|+|||+|.+
T Consensus 111 ~i~yD~LViAtG---s~~~~~~ip---G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 184 (424)
T PTZ00318 111 SVPYDKLVVAHG---ARPNTFNIP---GVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPT 184 (424)
T ss_pred EecCCEEEECCC---cccCCCCCC---CHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHH
Confidence 799999999999 557888888 875421 0 01011111000 000 0001123469999999999
Q ss_pred HHHHHHHHHHhcCC---------CCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhh
Q 041145 219 AIDLAVECAEANQG---------PNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILS 289 (522)
Q Consensus 219 g~dia~~l~~~~~~---------~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 289 (522)
|+|+|.+|++.... ..+++||++.+.+..+ |..+
T Consensus 185 GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-~~~~------------------------------------ 227 (424)
T PTZ00318 185 GVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-GSFD------------------------------------ 227 (424)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-ccCC------------------------------------
Confidence 99999999874200 0135699998876522 2110
Q ss_pred hhHHHHHHHHHHHHhhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCcEEecCCcee
Q 041145 290 PMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGGIEFEDKSKL 368 (522)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~v~~~dG~~~ 368 (522)
.. +++.+.+.+++.+|+++.+. |.+++++.|+++||+++
T Consensus 228 ---~~-------------------------------------~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i 267 (424)
T PTZ00318 228 ---QA-------------------------------------LRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVI 267 (424)
T ss_pred ---HH-------------------------------------HHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEE
Confidence 00 11122344567789999776 88999999999999999
Q ss_pred eccEEEEeccCCCCccccccCCCcccccccCcccccccccccccCCCCceeEeecccc------cchhhHHHHHHHHHHH
Q 041145 369 EADVVLLATGYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET------VSNLQIAEIRCKWLAR 442 (522)
Q Consensus 369 ~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~------~~~~~~ae~qa~~~a~ 442 (522)
++|.||||+|.+++. +...+ ++..++++.+.+...+..+++||||++|++.. +...+.|..||+++|+
T Consensus 268 ~~d~vi~~~G~~~~~-~~~~~-----~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ 341 (424)
T PTZ00318 268 PTGLVVWSTGVGPGP-LTKQL-----KVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAK 341 (424)
T ss_pred EccEEEEccCCCCcc-hhhhc-----CCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHH
Confidence 999999999999883 21111 22224456777887777789999999997764 2235779999999998
Q ss_pred HhcCCC
Q 041145 443 LADQKF 448 (522)
Q Consensus 443 ~l~g~~ 448 (522)
.|.+.+
T Consensus 342 ni~~~l 347 (424)
T PTZ00318 342 EFNNEL 347 (424)
T ss_pred HHHHHh
Confidence 886443
No 15
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.95 E-value=1.1e-26 Score=244.93 Aligned_cols=281 Identities=16% Similarity=0.163 Sum_probs=198.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.+||+|||||++|++||..| .|++++|||+. +||.|.. .+ . ...++. -.+....++.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~-~~---~---------~~~~~~-----~~~~~~~~l~~ 270 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLD-TM---G---------IENFIS-----VPETEGPKLAA 270 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeec-cC---c---------ccccCC-----CCCCCHHHHHH
Confidence 57999999999999999999 89999999874 8998864 11 0 000110 12356778999
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++...++++++ .++++++|+++.. + .+.|.|++.++. .+.||.||+|||. .
T Consensus 271 ~l~~~~~~~gv--~i~~~~~V~~I~~--~-------------------~~~~~V~~~~g~---~i~a~~vViAtG~---~ 321 (517)
T PRK15317 271 ALEEHVKEYDV--DIMNLQRASKLEP--A-------------------AGLIEVELANGA---VLKAKTVILATGA---R 321 (517)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEEe--c-------------------CCeEEEEECCCC---EEEcCEEEECCCC---C
Confidence 99999999998 6888999999987 3 346778776654 6899999999995 4
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
|+.|++| |.++|.+..+|.....+ ...++||+|+|||+|++|+|+|..|+..+. +||++.|.+...
T Consensus 322 ~r~~~ip---G~~~~~~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~-----~Vtlv~~~~~l~ 387 (517)
T PRK15317 322 WRNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVK-----HVTVLEFAPELK 387 (517)
T ss_pred cCCCCCC---CHHHhcCceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCC-----EEEEEEECcccc
Confidence 7788889 98888877677654433 234689999999999999999999998754 599998887421
Q ss_pred ecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccccc
Q 041145 249 LPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQ 328 (522)
Q Consensus 249 ~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 328 (522)
.. +
T Consensus 388 ~~------------------------------------------~----------------------------------- 390 (517)
T PRK15317 388 AD------------------------------------------Q----------------------------------- 390 (517)
T ss_pred cc------------------------------------------H-----------------------------------
Confidence 00 0
Q ss_pred ccccCcchhhhcc-cCcEEEEeCc-eeEEecC-----cEEec---CCc--eeeccEEEEeccCCCCccccccCCCccccc
Q 041145 329 MAILPENFFSEAE-KGNILFKRAS-KWWFWSG-----GIEFE---DKS--KLEADVVLLATGYDGKKKLQSILPKPFSSL 396 (522)
Q Consensus 329 ~~~~~~~~~~~l~-~~~v~v~~~~-i~~~~~~-----~v~~~---dG~--~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~ 396 (522)
.+.+.+. ..+|+++.+. +.++.++ +|++. +|+ ++++|.|++|+|++++..+.. .. +
T Consensus 391 ------~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~---~~---v 458 (517)
T PRK15317 391 ------VLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLK---GT---V 458 (517)
T ss_pred ------HHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHh---hh---e
Confidence 0001122 3477887776 6676655 25554 343 489999999999999854321 11 2
Q ss_pred ccCcccccccccccccCCCCceeEeecccccch--hhHHHHHHHHHHHHh
Q 041145 397 LADSSGIMPLYRGTIHPLIPNMAFVGYIETVSN--LQIAEIRCKWLARLA 444 (522)
Q Consensus 397 ~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~--~~~ae~qa~~~a~~l 444 (522)
..++++.+.+...+. ++.||||++|++..... ...|..++..+|..+
T Consensus 459 ~~~~~g~i~vd~~l~-Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~ 507 (517)
T PRK15317 459 ELNRRGEIIVDARGA-TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSA 507 (517)
T ss_pred eeCCCCcEEECcCCC-CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHH
Confidence 223445555555554 78999999998865432 455666666666544
No 16
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.95 E-value=6e-27 Score=242.98 Aligned_cols=303 Identities=15% Similarity=0.115 Sum_probs=187.4
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC-CCCcccCCC-ccCcccccCCCCCcccCCCCCCCCCCCCCCChH
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATN-SIGGVWKHC-SFNSTKLQTPRCDFEFSDYPWPERDDASFPSHV 84 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~-~~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
|+.+||+|||||++|+++|..| .|.+|+|||+.+ .+||+|.+. +.|...+..+.. .. .++. .......
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~~-~~~~-~~~~~~~ 72 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------QH-TDFV-RAIQRKN 72 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc------cC-CCHH-HHHHHHH
Confidence 3467999999999999999999 899999999976 489998642 334322111000 00 0000 0111122
Q ss_pred HHHHHHHHH-----HHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEE
Q 041145 85 ELLDYLHGY-----AVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLV 159 (522)
Q Consensus 85 ~~~~yl~~~-----~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vV 159 (522)
++..+++.. .+..++ .+. ..++..++ .+.+.|...++ ..++.||+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~gv--~~~-~g~~~~i~-----------------------~~~~~v~~~~g--~~~~~~d~lv 124 (441)
T PRK08010 73 EVVNFLRNKNFHNLADMPNI--DVI-DGQAEFIN-----------------------NHSLRVHRPEG--NLEIHGEKIF 124 (441)
T ss_pred HHHHHHHHhHHHHHhhcCCc--EEE-EEEEEEec-----------------------CCEEEEEeCCC--eEEEEeCEEE
Confidence 333333221 111122 111 12333332 23344544333 2368999999
Q ss_pred EeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 041145 160 MCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCT 239 (522)
Q Consensus 160 iAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt 239 (522)
+||| +.|..|++| |++++.+ ++++.++... ...+++|+|||+|.+|+|+|..+++.+. +||
T Consensus 125 iATG---s~p~~p~i~---G~~~~~~-v~~~~~~~~~-------~~~~~~v~ViGgG~~g~E~A~~l~~~g~-----~Vt 185 (441)
T PRK08010 125 INTG---AQTVVPPIP---GITTTPG-VYDSTGLLNL-------KELPGHLGILGGGYIGVEFASMFANFGS-----KVT 185 (441)
T ss_pred EcCC---CcCCCCCCC---CccCCCC-EEChhHhhcc-------cccCCeEEEECCCHHHHHHHHHHHHCCC-----eEE
Confidence 9999 568889999 9876554 5555444332 1356899999999999999999998865 599
Q ss_pred EEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCc
Q 041145 240 MVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHP 319 (522)
Q Consensus 240 ~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 319 (522)
++.|.+. ++|..+. .
T Consensus 186 li~~~~~-~l~~~~~---------------------------------------~------------------------- 200 (441)
T PRK08010 186 ILEAASL-FLPREDR---------------------------------------D------------------------- 200 (441)
T ss_pred EEecCCC-CCCCcCH---------------------------------------H-------------------------
Confidence 9999764 3332210 0
Q ss_pred cccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC--cEEec-CCceeeccEEEEeccCCCCccccccCCCcccc
Q 041145 320 FEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG--GIEFE-DKSKLEADVVLLATGYDGKKKLQSILPKPFSS 395 (522)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~v~~~-dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~ 395 (522)
+.+.+.+.+++.+|+++.+. +.+++.+ ++.+. ++.++++|.||+|+|.+++..+.. ....+
T Consensus 201 ------------~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~---~~~~g 265 (441)
T PRK08010 201 ------------IADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLH---PENAG 265 (441)
T ss_pred ------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcC---chhcC
Confidence 01112234556778888776 7777643 34332 233589999999999999953211 11112
Q ss_pred cccCcccccccccccccCCCCceeEeecccccch-hhHHHHHHHHHHHHhcCC
Q 041145 396 LLADSSGIMPLYRGTIHPLIPNMAFVGYIETVSN-LQIAEIRCKWLARLADQK 447 (522)
Q Consensus 396 ~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~-~~~ae~qa~~~a~~l~g~ 447 (522)
+..++++.+.+..++ .++.||||++|++.+... .+.|..|++.++..+.|+
T Consensus 266 l~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 266 IAVNERGAIVVDKYL-HTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred cEECCCCcEEECCCc-ccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 222345556666664 468999999998876443 578999999999999874
No 17
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=1.4e-26 Score=241.71 Aligned_cols=304 Identities=20% Similarity=0.172 Sum_probs=189.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcccC----CCCCCCCCCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEFS----DYPWPERDDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 83 (522)
.+||+||||||||++||..| .|++|+|+|+.. +||+|.+. +.|+..+......+.+. .+.+... ......
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 80 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE--NVGIDF 80 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC--CCccCH
Confidence 57999999999999999999 899999999976 99988653 66665443333332221 1222111 123456
Q ss_pred HHHHHHHHHHHHh-----------cCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 84 VELLDYLHGYAVH-----------FDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 84 ~~~~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
.++.+|.+.+.++ .++ .+..+ +++.++ ...+.|...++ ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~~~-----------------------~~~~~v~~~~~--~~~ 132 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRG-EAKLVD-----------------------PNTVRVMTEDG--EQT 132 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEcc-----------------------CCEEEEecCCC--cEE
Confidence 6677775554443 232 12222 222221 12233332222 147
Q ss_pred EEECEEEEeeeccCCCCCCCCCCCCCCccccCCc-eeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcC
Q 041145 153 YGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGK-VLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQ 231 (522)
Q Consensus 153 ~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~ 231 (522)
+.||+||+|||. .|..| | |.+. .+. ++++.+.... ...+|+|+|||+|.+|+|+|..+++.+.
T Consensus 133 ~~~d~lViAtGs---~p~~~--p---g~~~-~~~~v~~~~~~~~~-------~~~~~~vvVvGgG~~g~E~A~~l~~~g~ 196 (462)
T PRK06416 133 YTAKNIILATGS---RPREL--P---GIEI-DGRVIWTSDEALNL-------DEVPKSLVVIGGGYIGVEFASAYASLGA 196 (462)
T ss_pred EEeCEEEEeCCC---CCCCC--C---CCCC-CCCeEEcchHhhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 999999999994 46544 4 5542 233 3344333221 1346899999999999999999998764
Q ss_pred CCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccc
Q 041145 232 GPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVK 311 (522)
Q Consensus 232 ~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (522)
+||++.|.+.+ +|..+ ..
T Consensus 197 -----~Vtli~~~~~~-l~~~~---------------------------------------~~----------------- 214 (462)
T PRK06416 197 -----EVTIVEALPRI-LPGED---------------------------------------KE----------------- 214 (462)
T ss_pred -----eEEEEEcCCCc-CCcCC---------------------------------------HH-----------------
Confidence 49999998753 23211 00
Q ss_pred CCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC--c--EEecCC---ceeeccEEEEeccCCCCc
Q 041145 312 FGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG--G--IEFEDK---SKLEADVVLLATGYDGKK 383 (522)
Q Consensus 312 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~--v~~~dG---~~~~~D~VI~ATG~~~~~ 383 (522)
+.+.+.+.+++.+|+++.+. +.+++++ + +.+++| +++++|.||+|+|++++.
T Consensus 215 --------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 215 --------------------ISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred --------------------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 00111233445678888876 7777643 3 445566 669999999999999985
Q ss_pred cccccCCCcccccccCcccccccccccccCCCCceeEeecccc-cchhhHHHHHHHHHHHHhcCCC
Q 041145 384 KLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET-VSNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~-~~~~~~ae~qa~~~a~~l~g~~ 448 (522)
.+. .....++..+ .+.+.+..++. ++.||||++|+... +...+.|..|++.+|..+.|..
T Consensus 275 ~~l---~l~~~gl~~~-~g~i~vd~~~~-t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 275 ENL---GLEELGVKTD-RGFIEVDEQLR-TNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CCC---CchhcCCeec-CCEEeECCCCc-cCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 331 1111112222 44455555544 78999999998765 3346789999999999998754
No 18
>PRK06370 mercuric reductase; Validated
Probab=99.95 E-value=8.4e-27 Score=243.26 Aligned_cols=305 Identities=13% Similarity=0.086 Sum_probs=188.4
Q ss_pred cccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCCCCCCCC
Q 041145 8 VQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPERDDASF 80 (522)
Q Consensus 8 ~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 80 (522)
||+.+||+||||||+|++||..| .|++|+|||+. .+||+|.+. +.|+..+......+. ...+.++... ...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~~ 79 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGG-PVS 79 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCc-cCc
Confidence 56678999999999999999999 89999999996 689988752 444432211111111 0111111100 012
Q ss_pred CChHHHHHHHHHHHHh-----------c-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC
Q 041145 81 PSHVELLDYLHGYAVH-----------F-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ 148 (522)
Q Consensus 81 ~~~~~~~~yl~~~~~~-----------~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (522)
....++.++.+..+++ . ++ .+..++.+. + + ..+|++. +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~-~----~---------------------~~~v~v~-~- 129 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF-E----S---------------------PNTVRVG-G- 129 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE-c----c---------------------CCEEEEC-c-
Confidence 3444455444333322 2 22 233333221 1 1 1145552 2
Q ss_pred eeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHH
Q 041145 149 AIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAE 228 (522)
Q Consensus 149 ~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~ 228 (522)
.++.||+||+||| +.|+.|++| |.+.. .++++.+.... ...+|+|+|||+|.+|+|+|..+++
T Consensus 130 --~~~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvVIGgG~~g~E~A~~l~~ 192 (463)
T PRK06370 130 --ETLRAKRIFINTG---ARAAIPPIP---GLDEV--GYLTNETIFSL-------DELPEHLVIIGGGYIGLEFAQMFRR 192 (463)
T ss_pred --EEEEeCEEEEcCC---CCCCCCCCC---CCCcC--ceEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHH
Confidence 2689999999999 568999999 87642 24444443321 1346999999999999999999998
Q ss_pred hcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCC
Q 041145 229 ANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLP 308 (522)
Q Consensus 229 ~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (522)
.+. +||++.|.+.. +|..+ ..
T Consensus 193 ~G~-----~Vtli~~~~~~-l~~~~---------------------------------------~~-------------- 213 (463)
T PRK06370 193 FGS-----EVTVIERGPRL-LPRED---------------------------------------ED-------------- 213 (463)
T ss_pred cCC-----eEEEEEcCCCC-CcccC---------------------------------------HH--------------
Confidence 865 49999998752 22211 00
Q ss_pred cccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC--c--EEec--C-CceeeccEEEEeccCC
Q 041145 309 LVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG--G--IEFE--D-KSKLEADVVLLATGYD 380 (522)
Q Consensus 309 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~--v~~~--d-G~~~~~D~VI~ATG~~ 380 (522)
+.+.+.+.+++.+|+++.+. +.+++.+ + +.+. + ++++++|.||+|||++
T Consensus 214 -----------------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 214 -----------------------VAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred -----------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 00111233446678888775 7777643 2 3332 3 3569999999999999
Q ss_pred CCccccccCCCcccccccCcccccccccccccCCCCceeEeecccccch-hhHHHHHHHHHHHHhcCC
Q 041145 381 GKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVSN-LQIAEIRCKWLARLADQK 447 (522)
Q Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~-~~~ae~qa~~~a~~l~g~ 447 (522)
|+... +...-.++..++++.+.+...+. ++.||||++|++.+... .+.|..|++.+|+.+.|.
T Consensus 271 pn~~~---l~l~~~g~~~~~~G~i~vd~~l~-t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 271 PNTDD---LGLEAAGVETDARGYIKVDDQLR-TTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred cCCCC---cCchhhCceECCCCcEeECcCCc-CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 99531 10111122223455566666644 68999999998876443 478999999999999875
No 19
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.95 E-value=6.1e-27 Score=242.11 Aligned_cols=290 Identities=16% Similarity=0.192 Sum_probs=186.7
Q ss_pred cEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 13 KIGIIGAGISGIATAKQL----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
+|||||||++|+.+|.+| .+.+|+|||+++.++ +..+..|... . .......+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~~lp~~~----------------~---~~~~~~~~~~~ 61 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANCALPYYI----------------G---EVVEDRKYALA 61 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccCCcchhh----------------c---CccCCHHHccc
Confidence 799999999999999999 368999999987653 1111111100 0 01111222222
Q ss_pred H-HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC--eeEEEEECEEEEeeecc
Q 041145 89 Y-LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ--AIQWYGFELLVMCIGKF 165 (522)
Q Consensus 89 y-l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~d~vViAtG~~ 165 (522)
+ .+.+.++.++ .++++++|++++. +. . .|.+.+++ +..++.||+||||||
T Consensus 62 ~~~~~~~~~~~i--~v~~~~~V~~Id~--~~-------------------~--~v~~~~~~~~~~~~~~yd~lviAtG-- 114 (438)
T PRK13512 62 YTPEKFYDRKQI--TVKTYHEVIAIND--ER-------------------Q--TVTVLNRKTNEQFEESYDKLILSPG-- 114 (438)
T ss_pred CCHHHHHHhCCC--EEEeCCEEEEEEC--CC-------------------C--EEEEEECCCCcEEeeecCEEEECCC--
Confidence 2 1344455666 6778899999986 31 1 46665542 134578999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccCCCchhh-hhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 166 GDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEA-ATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 166 s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
+.|+.|+++ +. .++....+.+..... ......+++|+|||+|.+|+|+|..+++.+. +||++.|+
T Consensus 115 -s~~~~~~~~---~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~-----~Vtli~~~ 180 (438)
T PRK13512 115 -ASANSLGFE---SD-----ITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGL-----HPTLIHRS 180 (438)
T ss_pred -CCCCCCCCC---CC-----CeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCC-----cEEEEecc
Confidence 557777655 31 122222222110000 0012346899999999999999999998765 49999998
Q ss_pred CceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccc
Q 041145 245 LHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDY 324 (522)
Q Consensus 245 ~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 324 (522)
+.. ++..+ ..
T Consensus 181 ~~l-~~~~d---------------------------------------~~------------------------------ 190 (438)
T PRK13512 181 DKI-NKLMD---------------------------------------AD------------------------------ 190 (438)
T ss_pred ccc-chhcC---------------------------------------HH------------------------------
Confidence 752 22111 00
Q ss_pred ccccccccCcchhhhcccCcEEEEeCc-eeEEecCcEEecCCceeeccEEEEeccCCCCccccccCCCcccccccCcccc
Q 041145 325 ASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGGIEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSSGI 403 (522)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~ 403 (522)
+...+.+.+++.+|+++.+. +.++++..|++++|+++++|.||+|+|++++..+.. . .++..++++.
T Consensus 191 -------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~---~--~gl~~~~~G~ 258 (438)
T PRK13512 191 -------MNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIE---S--SNIKLDDKGF 258 (438)
T ss_pred -------HHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHH---h--cCcccCCCCc
Confidence 11112234556788888876 888888889999999999999999999999853321 1 1222234555
Q ss_pred cccccccccCCCCceeEeeccccc-----------chhhHHHHHHHHHHHHhcCC
Q 041145 404 MPLYRGTIHPLIPNMAFVGYIETV-----------SNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 404 ~~l~~~~~~~~~pni~~vG~~~~~-----------~~~~~ae~qa~~~a~~l~g~ 447 (522)
+.++..+. ++.||||++|++... ...+.|..||+.+|+.+.|.
T Consensus 259 i~Vd~~~~-t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 259 IPVNDKFE-TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred EEECCCcc-cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 66766654 689999999977531 22356889999999999875
No 20
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=1.4e-26 Score=241.69 Aligned_cols=317 Identities=16% Similarity=0.121 Sum_probs=185.4
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCccc-----CCCCCCCCCCCCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEF-----SDYPWPERDDASF 80 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 80 (522)
|+.+||+|||||++|++||..| .|.+|+|||++ .+||+|.+. +.|+..+......+.. ..+... . ...
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~-~~~ 77 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--G-EVT 77 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--c-Ccc
Confidence 3357999999999999999999 89999999985 789998764 4454322211111110 011111 0 112
Q ss_pred CChHHHHHHHHHHHHhcCCcCceEec-eEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEE
Q 041145 81 PSHVELLDYLHGYAVHFDVLKYIKFN-SKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLV 159 (522)
Q Consensus 81 ~~~~~~~~yl~~~~~~~~l~~~i~~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vV 159 (522)
.....+..+.+...++..-.-...+. ..|+.++..+.. .....+.|...+++ .+++.||+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~----------------~~~~~v~v~~~~g~-~~~~~~d~lV 140 (466)
T PRK07818 78 FDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTF----------------TDANTLEVDLNDGG-TETVTFDNAI 140 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE----------------cCCCEEEEEecCCC-eeEEEcCEEE
Confidence 23334444433332221000001111 133333321000 00222333322221 3468999999
Q ss_pred EeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 041145 160 MCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCT 239 (522)
Q Consensus 160 iAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt 239 (522)
|||| +.|..| | |.+ +.+.++++.+... ....+++|+|||+|.+|+|+|..+++.+. +||
T Consensus 141 iATG---s~p~~~--p---g~~-~~~~v~~~~~~~~-------~~~~~~~vvVIGgG~ig~E~A~~l~~~G~-----~Vt 199 (466)
T PRK07818 141 IATG---SSTRLL--P---GTS-LSENVVTYEEQIL-------SRELPKSIVIAGAGAIGMEFAYVLKNYGV-----DVT 199 (466)
T ss_pred EeCC---CCCCCC--C---CCC-CCCcEEchHHHhc-------cccCCCeEEEECCcHHHHHHHHHHHHcCC-----eEE
Confidence 9999 446654 5 643 2233444332111 12356899999999999999999998865 499
Q ss_pred EEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCc
Q 041145 240 MVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHP 319 (522)
Q Consensus 240 ~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 319 (522)
++.|.+. ++|..+ ..
T Consensus 200 lv~~~~~-~l~~~d---------------------------------------~~------------------------- 214 (466)
T PRK07818 200 IVEFLDR-ALPNED---------------------------------------AE------------------------- 214 (466)
T ss_pred EEecCCC-cCCccC---------------------------------------HH-------------------------
Confidence 9998775 223211 00
Q ss_pred cccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCc----EEec--CCc--eeeccEEEEeccCCCCccccccCC
Q 041145 320 FEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG----IEFE--DKS--KLEADVVLLATGYDGKKKLQSILP 390 (522)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~----v~~~--dG~--~~~~D~VI~ATG~~~~~~l~~~~~ 390 (522)
+...+.+.+++.+|+++.+. +.++++++ +.+. ||+ ++++|.||+|+|++|+..+..
T Consensus 215 ------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~--- 279 (466)
T PRK07818 215 ------------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYG--- 279 (466)
T ss_pred ------------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCC---
Confidence 11112234556788888876 77776532 4444 674 589999999999999953211
Q ss_pred CcccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhcCCC
Q 041145 391 KPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~~ 448 (522)
....++..+.++.+.+...+. ++.||||++|+..+. ...+.|..|++.+|..+.|..
T Consensus 280 l~~~g~~~~~~g~i~vd~~~~-Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~ 337 (466)
T PRK07818 280 LEKTGVALTDRGAIAIDDYMR-TNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE 337 (466)
T ss_pred chhcCcEECCCCcEeeCCCcc-cCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 111122223345566666544 689999999987653 346889999999999998753
No 21
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.95 E-value=4.1e-27 Score=244.11 Aligned_cols=301 Identities=17% Similarity=0.190 Sum_probs=188.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCc----ccCCCCCCCCCCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDF----EFSDYPWPERDDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 83 (522)
++||+||||||+|++||..+ .|++|+|+|+. .+||+|.+. +.|+..+....... .+..+..... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG--KARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC--CCCcCH
Confidence 57999999999999999999 89999999994 799998763 66665432221111 1111221110 111122
Q ss_pred HH-----------HHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 84 VE-----------LLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 84 ~~-----------~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
.+ +.++++...++.++ .+. ..++..++. . ++.+..++ .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~-~g~~~~v~~-----------------------~--~v~v~~~g--~~ 128 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGV--ELL-EGRARLVGP-----------------------N--TVEVLQDG--TT 128 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EEEEEEecC-----------------------C--EEEEecCC--eE
Confidence 22 23334444444454 232 224444432 1 23332221 26
Q ss_pred EEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCC
Q 041145 153 YGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQG 232 (522)
Q Consensus 153 ~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~ 232 (522)
+.||+||+||| +.|..|++| |.+. .+++.+.... ...+|+|+|||+|.+|+|+|..+++.+.
T Consensus 129 ~~~d~lIiATG---s~p~~p~i~---G~~~----~~~~~~~~~l-------~~~~~~vvVIGgG~~g~E~A~~l~~~G~- 190 (446)
T TIGR01424 129 YTAKKILIAVG---GRPQKPNLP---GHEL----GITSNEAFHL-------PTLPKSILILGGGYIAVEFAGIWRGLGV- 190 (446)
T ss_pred EEcCEEEEecC---CcCCCCCCC---Cccc----eechHHhhcc-------cccCCeEEEECCcHHHHHHHHHHHHcCC-
Confidence 89999999999 568888888 8653 1222222211 1247899999999999999999998765
Q ss_pred CCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccC
Q 041145 233 PNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKF 312 (522)
Q Consensus 233 ~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (522)
+|+++.|.+.. +|..+ ..+
T Consensus 191 ----~Vtli~~~~~~-l~~~d---------------------------------------~~~----------------- 209 (446)
T TIGR01424 191 ----QVTLIYRGELI-LRGFD---------------------------------------DDM----------------- 209 (446)
T ss_pred ----eEEEEEeCCCC-CcccC---------------------------------------HHH-----------------
Confidence 49999988752 12110 000
Q ss_pred CCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCCccccc
Q 041145 313 GLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGKKKLQS 387 (522)
Q Consensus 313 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~~~l~~ 387 (522)
...+.+.+++.+|+++.+. +.+++. ++ +.+.+|+++++|.||+|||++++.....
T Consensus 210 --------------------~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~ 269 (446)
T TIGR01424 210 --------------------RALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLG 269 (446)
T ss_pred --------------------HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCC
Confidence 0111233446678888776 677753 33 5667888899999999999999853211
Q ss_pred cCCCcccccccCcccccccccccccCCCCceeEeecccccch-hhHHHHHHHHHHHHhcCC
Q 041145 388 ILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVSN-LQIAEIRCKWLARLADQK 447 (522)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~-~~~ae~qa~~~a~~l~g~ 447 (522)
....++..++++.+.+...+ .++.||||++|++.+... .+.|..||+.++..+.|.
T Consensus 270 ---l~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 270 ---LEAAGVELNDAGAIAVDEYS-RTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred ---ccccCeEECCCCcEEeCCCC-ccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 11112222344556666555 468999999998876443 578999999999999874
No 22
>PRK14694 putative mercuric reductase; Provisional
Probab=99.95 E-value=2.7e-26 Score=239.43 Aligned_cols=308 Identities=17% Similarity=0.135 Sum_probs=191.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCccc-CC----CCCCCCCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEF-SD----YPWPERDDASFPS 82 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~ 82 (522)
.+||+|||||+||+++|..| .|.+|+|||+. .+||+|.+. +.|+..+......+.. .. +.++.. ..-.+
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~--~~~~~ 82 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ--APVVD 82 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC--CCccC
Confidence 56999999999999999999 89999999996 699999752 3333322111111110 01 111111 11234
Q ss_pred hHHHHHHHHHHHHhcC-------CcC--ceE-eceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 83 HVELLDYLHGYAVHFD-------VLK--YIK-FNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 83 ~~~~~~yl~~~~~~~~-------l~~--~i~-~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
..++.++.+...+.+. +.. .+. +..+|+.++ ...|.|++.+++ ..+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id-----------------------~~~~~V~~~~g~-~~~ 138 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD-----------------------ERTLTVTLNDGG-EQT 138 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec-----------------------CCEEEEEecCCC-eEE
Confidence 5566665555444321 100 121 122333332 345788876542 246
Q ss_pred EEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCC
Q 041145 153 YGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQG 232 (522)
Q Consensus 153 ~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~ 232 (522)
+.||+||+||| +.|+.|++| |++++ .++++.+...+ ...+++|+|||+|.+|+|+|..|++.+.
T Consensus 139 ~~~d~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~~~l-------~~~~~~vvViG~G~~G~E~A~~l~~~g~- 202 (468)
T PRK14694 139 VHFDRAFIGTG---ARPAEPPVP---GLAET--PYLTSTSALEL-------DHIPERLLVIGASVVALELAQAFARLGS- 202 (468)
T ss_pred EECCEEEEeCC---CCCCCCCCC---CCCCC--ceEcchhhhch-------hcCCCeEEEECCCHHHHHHHHHHHHcCC-
Confidence 99999999999 568999999 88653 24444332221 1346899999999999999999998865
Q ss_pred CCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccC
Q 041145 233 PNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKF 312 (522)
Q Consensus 233 ~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (522)
+||++.+.. ++|..+ ..
T Consensus 203 ----~Vtlv~~~~--~l~~~~---------------------------------------~~------------------ 219 (468)
T PRK14694 203 ----RVTVLARSR--VLSQED---------------------------------------PA------------------ 219 (468)
T ss_pred ----eEEEEECCC--CCCCCC---------------------------------------HH------------------
Confidence 499997642 222211 00
Q ss_pred CCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCc--EEe-cCCceeeccEEEEeccCCCCcccccc
Q 041145 313 GLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG--IEF-EDKSKLEADVVLLATGYDGKKKLQSI 388 (522)
Q Consensus 313 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~--v~~-~dG~~~~~D~VI~ATG~~~~~~l~~~ 388 (522)
+.+.+.+.+++.+|+++.+. +.+++.++ +.+ .++.++++|.||+|+|.+++..+..
T Consensus 220 -------------------~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~- 279 (468)
T PRK14694 220 -------------------VGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLN- 279 (468)
T ss_pred -------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCC-
Confidence 11112233446678888775 66765432 222 2344699999999999999954321
Q ss_pred CCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCCC
Q 041145 389 LPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~~ 448 (522)
....++. ..++.+.+..++. ++.||||++|+..+.. ..+.|..|++.+|..+.|..
T Consensus 280 --l~~~g~~-~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~ 336 (468)
T PRK14694 280 --LESIGVE-TERGAIRIDEHLQ-TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD 336 (468)
T ss_pred --chhcCcc-cCCCeEeeCCCcc-cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 1111122 2345455655544 6899999999886533 45789999999999998753
No 23
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.95 E-value=2.6e-26 Score=238.01 Aligned_cols=296 Identities=14% Similarity=0.095 Sum_probs=183.0
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC-CCcccCCC-ccCcccccCCCCCcccCCCCCCCCCCCCCCChH
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNS-IGGVWKHC-SFNSTKLQTPRCDFEFSDYPWPERDDASFPSHV 84 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~-~GG~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
|+.+||+||||||||++||..| .|.+|+|||+.+. +||+|.+. +.|...+..... . ..+..
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~---------~~~~~ 65 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K---------NLSFE 65 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c---------CCCHH
Confidence 3467999999999999999999 8999999999865 69987542 333332211110 0 01222
Q ss_pred HHHHHHHH-----------HHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEE
Q 041145 85 ELLDYLHG-----------YAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153 (522)
Q Consensus 85 ~~~~yl~~-----------~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (522)
++..+.+. ...+.++ .+.. .++..+ + . .+|.+..+++..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~-g~~~~~----~-------------------~--~~v~v~~~~~~~~~ 117 (438)
T PRK07251 66 QVMATKNTVTSRLRGKNYAMLAGSGV--DLYD-AEAHFV----S-------------------N--KVIEVQAGDEKIEL 117 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEc----c-------------------C--CEEEEeeCCCcEEE
Confidence 22222222 1222222 1111 111111 1 1 14555443223468
Q ss_pred EECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCC
Q 041145 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGP 233 (522)
Q Consensus 154 ~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~ 233 (522)
.||+||+||| +.|+.|++| |.+++. .++++.++... ...+|+|+|||+|.+|+|+|..+++.+.
T Consensus 118 ~~d~vViATG---s~~~~p~i~---G~~~~~-~v~~~~~~~~~-------~~~~~~vvIIGgG~~g~e~A~~l~~~g~-- 181 (438)
T PRK07251 118 TAETIVINTG---AVSNVLPIP---GLADSK-HVYDSTGIQSL-------ETLPERLGIIGGGNIGLEFAGLYNKLGS-- 181 (438)
T ss_pred EcCEEEEeCC---CCCCCCCCC---CcCCCC-cEEchHHHhcc-------hhcCCeEEEECCCHHHHHHHHHHHHcCC--
Confidence 9999999999 558888899 875543 24555444432 1346899999999999999999998764
Q ss_pred CCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCC
Q 041145 234 NGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFG 313 (522)
Q Consensus 234 ~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (522)
+||++.|++.+ +|..+ ..+..
T Consensus 182 ---~Vtli~~~~~~-l~~~~---------------------------------------~~~~~---------------- 202 (438)
T PRK07251 182 ---KVTVLDAASTI-LPREE---------------------------------------PSVAA---------------- 202 (438)
T ss_pred ---eEEEEecCCcc-CCCCC---------------------------------------HHHHH----------------
Confidence 59999998753 22211 00000
Q ss_pred CCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC--cE-EecCCceeeccEEEEeccCCCCccccccC
Q 041145 314 LKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG--GI-EFEDKSKLEADVVLLATGYDGKKKLQSIL 389 (522)
Q Consensus 314 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~v-~~~dG~~~~~D~VI~ATG~~~~~~l~~~~ 389 (522)
.+.+.+++.+|+++.+. +.+++.+ .+ ...+|+++++|.||+|||++|+.....
T Consensus 203 ---------------------~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~-- 259 (438)
T PRK07251 203 ---------------------LAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLG-- 259 (438)
T ss_pred ---------------------HHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCC--
Confidence 11123445677887775 6777643 33 334677899999999999999853211
Q ss_pred CCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCC
Q 041145 390 PKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 390 ~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~ 447 (522)
.....+..+.++.+.+..++ .++.||+|++|++.+.. ..+.+..|++.++..+.|.
T Consensus 260 -l~~~~~~~~~~g~i~vd~~~-~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 260 -LENTDIELTERGAIKVDDYC-QTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred -chhcCcEECCCCcEEECCCc-ccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 11111222334555666553 46899999999877643 3477888999999888764
No 24
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.95 E-value=9.5e-27 Score=241.87 Aligned_cols=319 Identities=14% Similarity=0.135 Sum_probs=194.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--C-CCCcEEEccC--------CCCCcccCCC-ccCcccccCCCCCccc----CCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--R-HYDPLVFEAT--------NSIGGVWKHC-SFNSTKLQTPRCDFEF----SDYPWPE 74 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~-g~~v~v~e~~--------~~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~ 74 (522)
.+||+|||||++|..+|..+ . |.+|+|+|+. ..+||+|.+. |.|+..+......+.. ..+.+..
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~ 82 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF 82 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence 57999999999999999999 4 8999999984 5799999874 6666554333222111 1111110
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcC--CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeC---Ce
Q 041145 75 RDDASFPSHVELLDYLHGYAVHFD--VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETN---QA 149 (522)
Q Consensus 75 ~~~~~~~~~~~~~~yl~~~~~~~~--l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~ 149 (522)
.....-.....+.++.+.+.++.. ....+.-...|.-+.-.+. + .+..+|+++.. ++
T Consensus 83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~----------------f--~~~~~v~V~~~~~~~~ 144 (486)
T TIGR01423 83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGA----------------L--EDKNVVLVRESADPKS 144 (486)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEE----------------E--ccCCEEEEeeccCCCC
Confidence 000111344445555444433311 0000110011222211000 0 11224555421 11
Q ss_pred --eEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHH
Q 041145 150 --IQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECA 227 (522)
Q Consensus 150 --~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~ 227 (522)
.+++.||+|||||| +.|..|++| |.+. ++.+.+.... ...+++|+|||+|.+|+|+|..++
T Consensus 145 ~~~~~~~~d~lIIATG---s~p~~p~i~---G~~~----~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~~~ 207 (486)
T TIGR01423 145 AVKERLQAEHILLATG---SWPQMLGIP---GIEH----CISSNEAFYL-------DEPPRRVLTVGGGFISVEFAGIFN 207 (486)
T ss_pred CcceEEECCEEEEecC---CCCCCCCCC---Chhh----eechhhhhcc-------ccCCCeEEEECCCHHHHHHHHHHH
Confidence 34799999999999 568889899 8653 2233222211 124689999999999999999887
Q ss_pred HhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 041145 228 EANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKL 307 (522)
Q Consensus 228 ~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (522)
..... +.+||++.|.+..+ |..+ ..
T Consensus 208 ~l~~~--G~~Vtli~~~~~il-~~~d---------------------------------------~~------------- 232 (486)
T TIGR01423 208 AYKPR--GGKVTLCYRNNMIL-RGFD---------------------------------------ST------------- 232 (486)
T ss_pred HhccC--CCeEEEEecCCccc-cccC---------------------------------------HH-------------
Confidence 66322 45699999887632 3221 00
Q ss_pred CcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--C---cEEecCCceeeccEEEEeccCCC
Q 041145 308 PLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--G---GIEFEDKSKLEADVVLLATGYDG 381 (522)
Q Consensus 308 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~---~v~~~dG~~~~~D~VI~ATG~~~ 381 (522)
+.+.+.+.+++.+|+++.+. +.+++. + .|.+++|+++++|.||+|||++|
T Consensus 233 ------------------------~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 233 ------------------------LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred ------------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 11122234556678888876 777753 2 26677888899999999999999
Q ss_pred CccccccCCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCC
Q 041145 382 KKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~ 447 (522)
+..+.. ....++..++++.+.+..++. ++.||||++|++.+.. ..+.|..|++.++..+.|.
T Consensus 289 n~~~l~---l~~~gl~~~~~G~I~Vd~~l~-Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 289 RTQTLQ---LDKVGVELTKKGAIQVDEFSR-TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CcccCC---chhhCceECCCCCEecCCCCc-CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 953221 111122223455566666654 7899999999887644 3588999999999999874
No 25
>PRK07846 mycothione reductase; Reviewed
Probab=99.95 E-value=2.5e-26 Score=237.82 Aligned_cols=308 Identities=14% Similarity=0.072 Sum_probs=192.7
Q ss_pred CcEEEECCCHHHHHHHHHhCCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCccc----CCCCCCCCCCCCCCChHHH
Q 041145 12 SKIGIIGAGISGIATAKQLRHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEF----SDYPWPERDDASFPSHVEL 86 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 86 (522)
+||+|||||++|.++|..+.|.+|+|+|+. .+||+|.+. |.|+..+......+.. ..+..... ..-....++
T Consensus 2 yD~vVIG~G~~g~~aa~~~~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERFADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE--LDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHHCCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC--CCcCCHHHH
Confidence 699999999999999887799999999984 699999875 6666654333222211 11111111 112456667
Q ss_pred HHHHHHHHHhcCCc-CceE----eceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEe
Q 041145 87 LDYLHGYAVHFDVL-KYIK----FNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMC 161 (522)
Q Consensus 87 ~~yl~~~~~~~~l~-~~i~----~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViA 161 (522)
.++.....+++.-. .... .+.++..-+. . + ....+|++.+++ ++.||+||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~----------------~--~~~~~V~v~~g~---~~~~d~lViA 135 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHA--R----------------F--IGPKTLRTGDGE---EITADQVVIA 135 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEE--E----------------E--ecCCEEEECCCC---EEEeCEEEEc
Confidence 77766655543110 0011 1222221110 0 0 112357765543 6999999999
Q ss_pred eeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 041145 162 IGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMV 241 (522)
Q Consensus 162 tG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v 241 (522)
|| +.|+.|++| |.+.. .+.++.+...+ ...+|+|+|||+|.+|+|+|..+++.+. +||++
T Consensus 136 TG---s~p~~p~i~---g~~~~--~~~~~~~~~~l-------~~~~~~vvIIGgG~iG~E~A~~l~~~G~-----~Vtli 195 (451)
T PRK07846 136 AG---SRPVIPPVI---ADSGV--RYHTSDTIMRL-------PELPESLVIVGGGFIAAEFAHVFSALGV-----RVTVV 195 (451)
T ss_pred CC---CCCCCCCCC---CcCCc--cEEchHHHhhh-------hhcCCeEEEECCCHHHHHHHHHHHHcCC-----eEEEE
Confidence 99 568999998 75431 12233222221 1346899999999999999999998865 59999
Q ss_pred eecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCccc
Q 041145 242 IRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFE 321 (522)
Q Consensus 242 ~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~ 321 (522)
.|++..+ |..+ ..+...+.
T Consensus 196 ~~~~~ll-~~~d---------------------------------------~~~~~~l~--------------------- 214 (451)
T PRK07846 196 NRSGRLL-RHLD---------------------------------------DDISERFT--------------------- 214 (451)
T ss_pred EcCCccc-cccC---------------------------------------HHHHHHHH---------------------
Confidence 9987522 2111 00000000
Q ss_pred cccccccccccCcchhhhcccCcEEEEeCc-eeEEecC--c--EEecCCceeeccEEEEeccCCCCccccccCCCccccc
Q 041145 322 EDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG--G--IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSL 396 (522)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~--v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~ 396 (522)
+.+ +.+|+++.+. +.+++.+ + +.+.+|+++++|.||+|||++|+..+. .....++
T Consensus 215 ----------------~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l---~~~~~gl 274 (451)
T PRK07846 215 ----------------ELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLL---DAAAAGV 274 (451)
T ss_pred ----------------HHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcccc---CchhcCc
Confidence 112 2347777765 6677543 2 566788889999999999999995432 1111122
Q ss_pred ccCcccccccccccccCCCCceeEeecccccch-hhHHHHHHHHHHHHhcCC
Q 041145 397 LADSSGIMPLYRGTIHPLIPNMAFVGYIETVSN-LQIAEIRCKWLARLADQK 447 (522)
Q Consensus 397 ~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~-~~~ae~qa~~~a~~l~g~ 447 (522)
..++++.+.+..++. ++.||||++|+...... .+.|..|++++++.+.+.
T Consensus 275 ~~~~~G~i~Vd~~~~-Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 275 DVDEDGRVVVDEYQR-TSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred eECCCCcEeECCCcc-cCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 223455566666554 78999999998876543 578999999999999865
No 26
>PRK14727 putative mercuric reductase; Provisional
Probab=99.95 E-value=2e-26 Score=240.74 Aligned_cols=311 Identities=16% Similarity=0.121 Sum_probs=186.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcccC-CCC---CCCCCCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEFS-DYP---WPERDDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~ 83 (522)
.+||+|||||++|+++|+.| .|.+|+|+|+.+.+||+|.+. +.|+..+..+...+... ..+ ++... + -.+.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~-~~~~ 93 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVA-P-SIDR 93 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCC-C-ccCH
Confidence 57999999999999999999 899999999988899999864 46655443322211111 111 11111 1 1223
Q ss_pred HHHHHHHHHHHHhcC---CcCceEec--eEEEE--EEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEEC
Q 041145 84 VELLDYLHGYAVHFD---VLKYIKFN--SKVVE--IRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFE 156 (522)
Q Consensus 84 ~~~~~yl~~~~~~~~---l~~~i~~~--~~V~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d 156 (522)
..+..+......+.. ....+..+ .++.. .... + .+.+.|+..+++ ..++.||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~-~-------------------~~~v~v~~~~g~-~~~~~~d 152 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK-D-------------------GNTLVVRLHDGG-ERVLAAD 152 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEe-c-------------------CCEEEEEeCCCc-eEEEEeC
Confidence 333333332222110 00011111 12211 1221 1 344556554332 2468999
Q ss_pred EEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 041145 157 LLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQ 236 (522)
Q Consensus 157 ~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~ 236 (522)
+|||||| +.|..|++| |++.. ..+++.+... ....+|+|+|||+|.+|+|+|..+++.+.
T Consensus 153 ~lViATG---s~p~~p~i~---G~~~~--~~~~~~~~l~-------~~~~~k~vvVIGgG~iG~E~A~~l~~~G~----- 212 (479)
T PRK14727 153 RCLIATG---STPTIPPIP---GLMDT--PYWTSTEALF-------SDELPASLTVIGSSVVAAEIAQAYARLGS----- 212 (479)
T ss_pred EEEEecC---CCCCCCCCC---CcCcc--ceecchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHcCC-----
Confidence 9999999 568999999 87542 2233222111 11346899999999999999999998764
Q ss_pred cEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCC
Q 041145 237 PCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKP 316 (522)
Q Consensus 237 ~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 316 (522)
+||++.|.. +++..+ ..+
T Consensus 213 ~Vtlv~~~~--~l~~~d---------------------------------------~~~--------------------- 230 (479)
T PRK14727 213 RVTILARST--LLFRED---------------------------------------PLL--------------------- 230 (479)
T ss_pred EEEEEEcCC--CCCcch---------------------------------------HHH---------------------
Confidence 599998742 223211 000
Q ss_pred CCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--CcE--EecCCceeeccEEEEeccCCCCccccccCCC
Q 041145 317 DHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GGI--EFEDKSKLEADVVLLATGYDGKKKLQSILPK 391 (522)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~v--~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~ 391 (522)
.+.+.+.+++.+|+++.+. +.+++. +++ .+.+| ++++|.||+|+|+.++..+. ..
T Consensus 231 ----------------~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l---~l 290 (479)
T PRK14727 231 ----------------GETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDL---NL 290 (479)
T ss_pred ----------------HHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCC---Cc
Confidence 0111233445677777765 666643 333 33444 58999999999999985321 11
Q ss_pred cccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhcCC
Q 041145 392 PFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 392 ~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~ 447 (522)
...++..+.++.+.+...+ .++.||||++|++... ...+.|..|++.+|..+.|.
T Consensus 291 ~~~g~~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 291 EAVGVTTDTSGAIVVNPAM-ETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred hhhCceecCCCCEEECCCe-ecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 1112222345556666654 4689999999988754 34578999999999999875
No 27
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.95 E-value=1.2e-26 Score=242.11 Aligned_cols=302 Identities=19% Similarity=0.128 Sum_probs=186.8
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcccCC---CCCCCCCCCCCCChHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEFSD---YPWPERDDASFPSHVE 85 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 85 (522)
+||+||||||+|+++|..+ .|++|+|||+.. +||+|.+. +.|+..+......+.+.. +..... ...++..+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~--~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA--TVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccC--CCccCHHH
Confidence 4899999999999999999 899999999975 99998753 566544332222222111 111100 11122333
Q ss_pred HHHHHH------------HHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEE
Q 041145 86 LLDYLH------------GYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153 (522)
Q Consensus 86 ~~~yl~------------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (522)
+..+.+ ...+++++ .+..+ ++..+ + ..+|++.++ ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g-~~~~~----~---------------------~~~v~v~~g--~~~~ 127 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGV--DYLRG-RARFK----D---------------------PKTVKVDLG--REVR 127 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCc--EEEEE-EEEEc----c---------------------CCEEEEcCC--eEEE
Confidence 332222 22333333 12211 22111 1 124666443 2358
Q ss_pred EECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCC
Q 041145 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGP 233 (522)
Q Consensus 154 ~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~ 233 (522)
.||+||+||| +.|..|++| |.+.+ .++++.+.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 128 ~~~~lIiATG---s~p~~p~i~---G~~~~--~~~~~~~~~~~-------~~~~~~vvIIGgG~~g~E~A~~l~~~g~-- 190 (463)
T TIGR02053 128 GAKRFLIATG---ARPAIPPIP---GLKEA--GYLTSEEALAL-------DRIPESLAVIGGGAIGVELAQAFARLGS-- 190 (463)
T ss_pred EeCEEEEcCC---CCCCCCCCC---CcccC--ceECchhhhCc-------ccCCCeEEEECCCHHHHHHHHHHHHcCC--
Confidence 8999999999 568899999 87654 24555444331 1235899999999999999999998865
Q ss_pred CCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCC
Q 041145 234 NGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFG 313 (522)
Q Consensus 234 ~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (522)
+||++.|.+. ++|..+. .+.
T Consensus 191 ---~Vtli~~~~~-~l~~~d~---------------------------------------~~~----------------- 210 (463)
T TIGR02053 191 ---EVTILQRSDR-LLPREEP---------------------------------------EIS----------------- 210 (463)
T ss_pred ---cEEEEEcCCc-CCCccCH---------------------------------------HHH-----------------
Confidence 4999999875 2232210 000
Q ss_pred CCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC--c--EEec---CCceeeccEEEEeccCCCCccc
Q 041145 314 LKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG--G--IEFE---DKSKLEADVVLLATGYDGKKKL 385 (522)
Q Consensus 314 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~--v~~~---dG~~~~~D~VI~ATG~~~~~~l 385 (522)
..+.+.+++.+|+++.+. +.+++.+ . +.+. +++++++|.||+|+|++++...
T Consensus 211 --------------------~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 211 --------------------AAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred --------------------HHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 111133445678887776 7776543 2 3443 2356999999999999998531
Q ss_pred cccCCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCC
Q 041145 386 QSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~ 447 (522)
+.....++..++++.+.+...+ .++.||||++|+..+.. ..+.|..|++.+|..+.+.
T Consensus 271 ---l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 271 ---LGLEKAGVKLDERGGILVDETL-RTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred ---CCccccCCEECCCCcEeECCCc-cCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 1111112222345556666554 46899999999877644 3578999999999999875
No 28
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.95 E-value=1.5e-26 Score=242.16 Aligned_cols=310 Identities=18% Similarity=0.177 Sum_probs=190.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC--------CCCcccCCC-ccCcccccCCCCCccc-----CCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN--------SIGGVWKHC-SFNSTKLQTPRCDFEF-----SDYPWPE 74 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~--------~~GG~w~~~-~~~~~~~~~~~~~~~~-----~~~~~~~ 74 (522)
.+||+||||||+|++||..+ .|.+|+|+|+.. .+||+|.+. ++|+..+..+...+.. ..+.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 47999999999999999999 899999999631 489998653 6675433222111110 1112211
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCcCceEeceE---EEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeE
Q 041145 75 RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSK---VVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQ 151 (522)
Q Consensus 75 ~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~---V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (522)
. . -....++.++++..+++++. .+....+ |+-+...... .+.++|.+.+.+...
T Consensus 85 -~-~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~g~a~~------------------~~~~~v~v~~~~~~~ 141 (499)
T PTZ00052 85 -S-S-SFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYINGLAKL------------------KDEHTVSYGDNSQEE 141 (499)
T ss_pred -C-C-CcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEEEEEEE------------------ccCCEEEEeeCCCce
Confidence 0 1 34667788888777766543 2222222 2222110000 112356654422234
Q ss_pred EEEECEEEEeeeccCCCCCCCC-CCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhc
Q 041145 152 WYGFELLVMCIGKFGDIPRMPA-FPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEAN 230 (522)
Q Consensus 152 ~~~~d~vViAtG~~s~~p~~p~-~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~ 230 (522)
.+.||+|||||| +.|..|. +| |.+.+ .+.+.+.... ...+++|+|||+|.+|+|+|..|++.+
T Consensus 142 ~i~~d~lIIATG---s~p~~p~~i~---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~G 205 (499)
T PTZ00052 142 TITAKYILIATG---GRPSIPEDVP---GAKEY---SITSDDIFSL-------SKDPGKTLIVGASYIGLETAGFLNELG 205 (499)
T ss_pred EEECCEEEEecC---CCCCCCCCCC---Cccce---eecHHHHhhh-------hcCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 799999999999 5588774 88 76542 2333332221 124579999999999999999999986
Q ss_pred CCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcc
Q 041145 231 QGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLV 310 (522)
Q Consensus 231 ~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (522)
. +||++.|. . +++..+ ..+
T Consensus 206 ~-----~Vtli~~~-~-~l~~~d---------------------------------------~~~--------------- 224 (499)
T PTZ00052 206 F-----DVTVAVRS-I-PLRGFD---------------------------------------RQC--------------- 224 (499)
T ss_pred C-----cEEEEEcC-c-ccccCC---------------------------------------HHH---------------
Confidence 5 49999874 2 223221 000
Q ss_pred cCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--C--cEEecCCceeeccEEEEeccCCCCccc
Q 041145 311 KFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--G--GIEFEDKSKLEADVVLLATGYDGKKKL 385 (522)
Q Consensus 311 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~--~v~~~dG~~~~~D~VI~ATG~~~~~~l 385 (522)
.+.+.+.+++.+|+++.+. +.+++. + .+.+++|+++++|.||+|+|++|+..+
T Consensus 225 ----------------------~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 225 ----------------------SEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred ----------------------HHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 1112233445667777775 555543 2 266778988999999999999999533
Q ss_pred cccCCCcccccccCcccccccccccccCCCCceeEeecccc--cchhhHHHHHHHHHHHHhcCC
Q 041145 386 QSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET--VSNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~--~~~~~~ae~qa~~~a~~l~g~ 447 (522)
. .....++..++++.+.+... .++.||||++|++.. +...+.|..|++.+|..+.|.
T Consensus 283 l---~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 283 L---NLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred c---CchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 2 11111122233443333333 578999999998653 334688999999999999874
No 29
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=6.7e-26 Score=236.18 Aligned_cols=306 Identities=16% Similarity=0.144 Sum_probs=183.2
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCCCCCCCCCC
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPERDDASFPS 82 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (522)
..+||+|||||++|+.+|..+ .|.+|+|+|+.+.+||+|.+. ++|+..+......+. ...+.+... ....+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~--~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG--EPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC--CCCcC
Confidence 367999999999999999999 899999999988899998764 666644321111111 111111110 11234
Q ss_pred hHHHHHHHHHHHHh-----------cCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-e
Q 041145 83 HVELLDYLHGYAVH-----------FDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-I 150 (522)
Q Consensus 83 ~~~~~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 150 (522)
..++.++.+...++ .++ .+. ..++..+ + .. +|.+...++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~-~g~a~~~----~-------------------~~--~v~v~~~~g~~ 132 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKV--TVV-NGLGKFT----G-------------------GN--TLEVTGEDGKT 132 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEc----c-------------------CC--EEEEecCCCce
Confidence 44555444433322 232 121 1122211 1 12 344433222 2
Q ss_pred EEEEECEEEEeeeccCCCCC-CCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHh
Q 041145 151 QWYGFELLVMCIGKFGDIPR-MPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEA 229 (522)
Q Consensus 151 ~~~~~d~vViAtG~~s~~p~-~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~ 229 (522)
.++.||+|||||| +.|. .|.++ +.. ..++.+.+.... ...+|+|+|||+|.+|+|+|..+++.
T Consensus 133 ~~~~~d~lViATG---s~p~~~p~~~---~~~---~~v~~~~~~~~~-------~~~~~~vvIiGgG~iG~E~A~~l~~~ 196 (471)
T PRK06467 133 TVIEFDNAIIAAG---SRPIQLPFIP---HDD---PRIWDSTDALEL-------KEVPKRLLVMGGGIIGLEMGTVYHRL 196 (471)
T ss_pred EEEEcCEEEEeCC---CCCCCCCCCC---CCC---CcEEChHHhhcc-------ccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999 4575 34445 422 124444433321 12458999999999999999999988
Q ss_pred cCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCc
Q 041145 230 NQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPL 309 (522)
Q Consensus 230 ~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (522)
+. +||++.+.+.. +|..+ ..+..
T Consensus 197 G~-----~Vtlv~~~~~i-l~~~d---------------------------------------~~~~~------------ 219 (471)
T PRK06467 197 GS-----EVDVVEMFDQV-IPAAD---------------------------------------KDIVK------------ 219 (471)
T ss_pred CC-----CEEEEecCCCC-CCcCC---------------------------------------HHHHH------------
Confidence 65 49999998762 23221 00111
Q ss_pred ccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEe--cCc--EEecCC----ceeeccEEEEeccCC
Q 041145 310 VKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFW--SGG--IEFEDK----SKLEADVVLLATGYD 380 (522)
Q Consensus 310 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~--~~~--v~~~dG----~~~~~D~VI~ATG~~ 380 (522)
.+.+.+++. |+++.+. +.+++ +++ +.++++ +++++|.||+|+|++
T Consensus 220 -------------------------~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 220 -------------------------VFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred -------------------------HHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 111223333 6666665 55554 233 344443 359999999999999
Q ss_pred CCccccccCCCcccccccCcccccccccccccCCCCceeEeecccc-cchhhHHHHHHHHHHHHhcCCC
Q 041145 381 GKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET-VSNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~-~~~~~~ae~qa~~~a~~l~g~~ 448 (522)
|+..+. ......+..++++.+.+..++ .++.||||++|++.+ +...+.|..|++.++..+.|..
T Consensus 274 pn~~~l---~~~~~gl~~~~~G~I~Vd~~~-~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~ 338 (471)
T PRK06467 274 PNGKLL---DAEKAGVEVDERGFIRVDKQC-RTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKK 338 (471)
T ss_pred ccCCcc---ChhhcCceECCCCcEeeCCCc-ccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCC
Confidence 995321 111112222345555565554 468999999998754 3346889999999999998753
No 30
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.95 E-value=6e-26 Score=238.94 Aligned_cols=282 Identities=18% Similarity=0.214 Sum_probs=193.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.+||+|||||+||++||..| .|++|+|||. .+||.+... . .. ..+.. .......++.+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~-~~--------~~~~~--------~~~~~~~~l~~ 271 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V-GI--------ENLIS--------VPYTTGSQLAA 271 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c-Cc--------ccccc--------cCCCCHHHHHH
Confidence 57999999999999999999 8999999985 489987541 0 00 00110 11245677888
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++...++++++ .++.+++|++++. + .+.+.|++.++. .+.||+||+|||. .
T Consensus 272 ~l~~~l~~~gv--~i~~~~~V~~I~~--~-------------------~~~~~v~~~~g~---~i~~d~lIlAtGa---~ 322 (515)
T TIGR03140 272 NLEEHIKQYPI--DLMENQRAKKIET--E-------------------DGLIVVTLESGE---VLKAKSVIVATGA---R 322 (515)
T ss_pred HHHHHHHHhCC--eEEcCCEEEEEEe--c-------------------CCeEEEEECCCC---EEEeCEEEECCCC---C
Confidence 88888888887 6888899999976 3 235677776554 7999999999994 4
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
|+.|++| |.+.+.+.-++.....+ .....+|+|+|||+|.+|+|+|..|+..+. +||++.+.+...
T Consensus 323 ~~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~-----~Vtli~~~~~l~ 388 (515)
T TIGR03140 323 WRKLGVP---GEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVR-----HVTVLEFADELK 388 (515)
T ss_pred cCCCCCC---CHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCc-----EEEEEEeCCcCC
Confidence 7788888 87666555444443322 223578999999999999999999998754 599998776410
Q ss_pred ecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccccc
Q 041145 249 LPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQ 328 (522)
Q Consensus 249 ~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 328 (522)
. . ..
T Consensus 389 ~------------------------------------------~----~~------------------------------ 392 (515)
T TIGR03140 389 A------------------------------------------D----KV------------------------------ 392 (515)
T ss_pred h------------------------------------------h----HH------------------------------
Confidence 0 0 00
Q ss_pred ccccCcchhhhccc-CcEEEEeCc-eeEEecC-----cEEecCC-----ceeeccEEEEeccCCCCccccccCCCccccc
Q 041145 329 MAILPENFFSEAEK-GNILFKRAS-KWWFWSG-----GIEFEDK-----SKLEADVVLLATGYDGKKKLQSILPKPFSSL 396 (522)
Q Consensus 329 ~~~~~~~~~~~l~~-~~v~v~~~~-i~~~~~~-----~v~~~dG-----~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~ 396 (522)
+.+.+++ .+|+++.+. +.++.++ +|+++++ +++++|.||+|+|+.|+..+.. . . +
T Consensus 393 -------l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~---~-~--~ 459 (515)
T TIGR03140 393 -------LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLK---D-A--V 459 (515)
T ss_pred -------HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHh---h-h--c
Confidence 0112222 467777776 6677654 3666543 3589999999999999854321 1 1 2
Q ss_pred ccCcccccccccccccCCCCceeEeecccccc--hhhHHHHHHHHHHHHhc
Q 041145 397 LADSSGIMPLYRGTIHPLIPNMAFVGYIETVS--NLQIAEIRCKWLARLAD 445 (522)
Q Consensus 397 ~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~--~~~~ae~qa~~~a~~l~ 445 (522)
..+.++.+.+...+ .++.||||++|++.... ....|..|+..+|..+.
T Consensus 460 ~~~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 460 ELNRRGEIVIDERG-RTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred ccCCCCeEEECCCC-CCCCCCEEEcccccCCccceEEEEEccHHHHHHHHH
Confidence 12334555555554 36899999999886532 23456677777776653
No 31
>PRK13748 putative mercuric reductase; Provisional
Probab=99.95 E-value=6.8e-26 Score=242.38 Aligned_cols=307 Identities=15% Similarity=0.129 Sum_probs=187.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc-cCCC----CCCCCCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE-FSDY----PWPERDDASFPS 82 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~ 82 (522)
++||+|||||++|+++|..| .|.+|+|||++ .+||+|.+. +.|+..+..+..... .... .++.. .....
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 174 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT--VPTID 174 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC--CCccC
Confidence 57999999999999999999 89999999997 899999763 556554322211111 0011 11111 11234
Q ss_pred hHHHHHHHHHHHHhcC-------CcC--ceEe-ceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 83 HVELLDYLHGYAVHFD-------VLK--YIKF-NSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 83 ~~~~~~yl~~~~~~~~-------l~~--~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
...+.++.+...++.. +.+ .+.+ ..++..++ ...+.|+..+++ .++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~-----------------------~~~~~v~~~~g~-~~~ 230 (561)
T PRK13748 175 RSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKD-----------------------DQTLIVRLNDGG-ERV 230 (561)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEec-----------------------CCEEEEEeCCCc-eEE
Confidence 5555555444433221 000 1111 11222221 233455543332 246
Q ss_pred EEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCC
Q 041145 153 YGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQG 232 (522)
Q Consensus 153 ~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~ 232 (522)
+.||+|||||| +.|..|++| |.+.. ..+++.+.. .....+|+|+|||+|.+|+|+|..+++.+.
T Consensus 231 ~~~d~lviAtG---s~p~~p~i~---g~~~~--~~~~~~~~~-------~~~~~~~~vvViGgG~ig~E~A~~l~~~g~- 294 (561)
T PRK13748 231 VAFDRCLIATG---ASPAVPPIP---GLKET--PYWTSTEAL-------VSDTIPERLAVIGSSVVALELAQAFARLGS- 294 (561)
T ss_pred EEcCEEEEcCC---CCCCCCCCC---CCCcc--ceEccHHHh-------hcccCCCeEEEECCCHHHHHHHHHHHHcCC-
Confidence 99999999999 568999999 87642 122222211 112356899999999999999999998865
Q ss_pred CCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccC
Q 041145 233 PNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKF 312 (522)
Q Consensus 233 ~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (522)
+||++.|.+ +++..+. .
T Consensus 295 ----~Vtli~~~~--~l~~~d~---------------------------------------~------------------ 311 (561)
T PRK13748 295 ----KVTILARST--LFFREDP---------------------------------------A------------------ 311 (561)
T ss_pred ----EEEEEecCc--cccccCH---------------------------------------H------------------
Confidence 599998853 2232210 0
Q ss_pred CCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--CcE--EecCCceeeccEEEEeccCCCCccccc
Q 041145 313 GLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GGI--EFEDKSKLEADVVLLATGYDGKKKLQS 387 (522)
Q Consensus 313 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~v--~~~dG~~~~~D~VI~ATG~~~~~~l~~ 387 (522)
+...+.+.+++.+|+++.+. +.+++. +.+ .+.+| ++++|.||+|+|++|+..+..
T Consensus 312 -------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~ 371 (561)
T PRK13748 312 -------------------IGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLA 371 (561)
T ss_pred -------------------HHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcC
Confidence 01111233446677887765 666653 223 33344 699999999999999953211
Q ss_pred cCCCcccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhcCC
Q 041145 388 ILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~ 447 (522)
....++..++++.+.+..++. ++.||||++|++.+. ...+.|..|++.++..+.|.
T Consensus 372 ---l~~~g~~~~~~g~i~vd~~~~-Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 372 ---LDAAGVTVNAQGAIVIDQGMR-TSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred ---chhcCceECCCCCEeECCCcc-cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 111122223445566665544 689999999988654 34578999999999999875
No 32
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.95 E-value=2.1e-26 Score=239.84 Aligned_cols=312 Identities=19% Similarity=0.149 Sum_probs=181.8
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc------cCCCCCCCCCCCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE------FSDYPWPERDDAS 79 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 79 (522)
|+.+||+||||||+|++||..+ .|.+|+|+|+++.+||+|.+. +.|+..+......+. +..+.... ..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~---~~ 77 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV---KP 77 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc---cC
Confidence 3357999999999999999999 899999999877899998764 566554332222221 11111100 01
Q ss_pred CCChHHHHHHHHHHHHhc--CCcCceEece-EEEEE----EEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 80 FPSHVELLDYLHGYAVHF--DVLKYIKFNS-KVVEI----RHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 80 ~~~~~~~~~yl~~~~~~~--~l~~~i~~~~-~V~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
-....++.++.....++. ++ ...++. .|.-+ +.. + ..+..|...+++ ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~g~a~~~-~-------------------~~~v~v~~~~g~-~~~ 134 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGV--EFLFRKNKVDWIKGWGRLD-G-------------------VGKVVVKAEDGS-ETQ 134 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH--HHHHHhCCCEEEEEEEEEc-c-------------------CCEEEEEcCCCc-eEE
Confidence 112233333222222111 00 000000 11111 110 1 223333332321 246
Q ss_pred EEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCC
Q 041145 153 YGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQG 232 (522)
Q Consensus 153 ~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~ 232 (522)
+.||+||||||+ .|. .+| |.+.....++++.+.... ...+|+|+|||+|.+|+|+|..+++.+.
T Consensus 135 ~~~d~lVIATGs---~p~--~ip---g~~~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~ig~E~A~~l~~~G~- 198 (466)
T PRK06115 135 LEAKDIVIATGS---EPT--PLP---GVTIDNQRIIDSTGALSL-------PEVPKHLVVIGAGVIGLELGSVWRRLGA- 198 (466)
T ss_pred EEeCEEEEeCCC---CCC--CCC---CCCCCCCeEECHHHHhCC-------ccCCCeEEEECCCHHHHHHHHHHHHcCC-
Confidence 999999999994 453 356 653212234554433321 1357999999999999999999998865
Q ss_pred CCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccC
Q 041145 233 PNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKF 312 (522)
Q Consensus 233 ~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (522)
+||++.|.+. ++|..+ ..
T Consensus 199 ----~Vtlie~~~~-il~~~d---------------------------------------~~------------------ 216 (466)
T PRK06115 199 ----QVTVVEYLDR-ICPGTD---------------------------------------TE------------------ 216 (466)
T ss_pred ----eEEEEeCCCC-CCCCCC---------------------------------------HH------------------
Confidence 5999998775 222211 00
Q ss_pred CCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--CcE--Eec---CC--ceeeccEEEEeccCCCC
Q 041145 313 GLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GGI--EFE---DK--SKLEADVVLLATGYDGK 382 (522)
Q Consensus 313 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~v--~~~---dG--~~~~~D~VI~ATG~~~~ 382 (522)
+...+.+.+++.+|+++.+. +.++++ +++ .+. +| +++++|.||+|+|++|+
T Consensus 217 -------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 217 -------------------TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred -------------------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 01112233446678888776 777764 243 332 23 46899999999999998
Q ss_pred ccccccCCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCCC
Q 041145 383 KKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 383 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~~ 448 (522)
... +.....++..+..+ +.+..+ +.++.||||++|++.+.. ..+.|..||+.++..+.|..
T Consensus 278 ~~~---l~~~~~g~~~~~~G-~~vd~~-~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 278 TQG---LGLETVGLETDKRG-MLANDH-HRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred ccc---CCcccccceeCCCC-EEECCC-eecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 532 11111112222233 334443 457899999999887543 35889999999999998763
No 33
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.94 E-value=2.5e-26 Score=239.94 Aligned_cols=310 Identities=19% Similarity=0.146 Sum_probs=189.0
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCCCCCCCCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPERDDASFP 81 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 81 (522)
|+.+||+|||||++|+++|+.| .|.+|+|||+ +.+||+|.+. +.|+..+......+. +..+.+... ....
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~--~~~~ 77 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD--GPKI 77 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC--CCcc
Confidence 3468999999999999999999 8999999999 6899999753 455433222111111 122222211 2346
Q ss_pred ChHHHHHHHHHHHHhcCCcCce-E--ec-eEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECE
Q 041145 82 SHVELLDYLHGYAVHFDVLKYI-K--FN-SKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFEL 157 (522)
Q Consensus 82 ~~~~~~~yl~~~~~~~~l~~~i-~--~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~ 157 (522)
+..++.++++...+++.. .+ . +. ..|.-+...... .+.+.+.+ ++ .++.||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~g~~~~------------------~~~~~v~v-~~---~~~~~d~ 133 (460)
T PRK06292 78 DFKKVMARVRRERDRFVG--GVVEGLEKKPKIDKIKGTARF------------------VDPNTVEV-NG---ERIEAKN 133 (460)
T ss_pred CHHHHHHHHHHHHHHHhc--chHHHHHhhCCCEEEEEEEEE------------------ccCCEEEE-Cc---EEEEeCE
Confidence 778888888777765432 11 0 00 011111110000 01224554 22 3799999
Q ss_pred EEEeeeccCCCCCCCCCCCCCCccccCC-ceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 041145 158 LVMCIGKFGDIPRMPAFPANKGEEIFGG-KVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQ 236 (522)
Q Consensus 158 vViAtG~~s~~p~~p~~p~~~G~~~f~g-~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~ 236 (522)
||+||| +. .|++| |.+.+.+ .++++.+.... ...+|+|+|||+|.+|+|+|..+++.+.
T Consensus 134 lIiATG---s~--~p~ip---g~~~~~~~~~~~~~~~~~~-------~~~~k~v~VIGgG~~g~E~A~~l~~~g~----- 193 (460)
T PRK06292 134 IVIATG---SR--VPPIP---GVWLILGDRLLTSDDAFEL-------DKLPKSLAVIGGGVIGLELGQALSRLGV----- 193 (460)
T ss_pred EEEeCC---CC--CCCCC---CCcccCCCcEECchHHhCc-------cccCCeEEEECCCHHHHHHHHHHHHcCC-----
Confidence 999999 44 45566 6543222 34443332221 2357999999999999999999998865
Q ss_pred cEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCC
Q 041145 237 PCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKP 316 (522)
Q Consensus 237 ~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 316 (522)
+|+++.|.+.. +|..+ ..+..
T Consensus 194 ~Vtli~~~~~~-l~~~d---------------------------------------~~~~~------------------- 214 (460)
T PRK06292 194 KVTVFERGDRI-LPLED---------------------------------------PEVSK------------------- 214 (460)
T ss_pred cEEEEecCCCc-Ccchh---------------------------------------HHHHH-------------------
Confidence 49999998752 22110 00111
Q ss_pred CCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC---cEEe--cCC--ceeeccEEEEeccCCCCcccccc
Q 041145 317 DHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG---GIEF--EDK--SKLEADVVLLATGYDGKKKLQSI 388 (522)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~---~v~~--~dG--~~~~~D~VI~ATG~~~~~~l~~~ 388 (522)
.+.+.+++. |+++.+. +.+++.+ .+.+ .+| +++++|.||+|+|++|+.....
T Consensus 215 ------------------~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~- 274 (460)
T PRK06292 215 ------------------QAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLG- 274 (460)
T ss_pred ------------------HHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCC-
Confidence 111234455 7777665 6666542 3443 344 4589999999999999953211
Q ss_pred CCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCC
Q 041145 389 LPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~ 447 (522)
..-.++..++++.+.+...+. ++.||||++|++.+.. ..+.|..||+.+|..+.|.
T Consensus 275 --l~~~g~~~~~~g~i~vd~~~~-ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 275 --LENTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred --cHhhCCEecCCCcEeECCCcc-cCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 111122223445555665544 5899999999887643 3578999999999999874
No 34
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.94 E-value=9.8e-26 Score=229.19 Aligned_cols=286 Identities=17% Similarity=0.204 Sum_probs=184.2
Q ss_pred CcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELL 87 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (522)
++|||||||+||+++|..| .+.+|+||++++.. .|....+ + ..+ .......++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~-------~y~~~~l--~---~~~----------~~~~~~~~~~ 60 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD-------EYNKPDL--S---HVF----------SQGQRADDLT 60 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC-------CcCcCcC--c---HHH----------hCCCCHHHhh
Confidence 4899999999999999999 46789999997642 2211110 0 000 0111223333
Q ss_pred H-HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 88 D-YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 88 ~-yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
. ....+++++++ .+.++++|++++. + .+.|++. + ..+.||+||+|||
T Consensus 61 ~~~~~~~~~~~gv--~~~~~~~V~~id~--~---------------------~~~v~~~-~---~~~~yd~LVlATG--- 108 (377)
T PRK04965 61 RQSAGEFAEQFNL--RLFPHTWVTDIDA--E---------------------AQVVKSQ-G---NQWQYDKLVLATG--- 108 (377)
T ss_pred cCCHHHHHHhCCC--EEECCCEEEEEEC--C---------------------CCEEEEC-C---eEEeCCEEEECCC---
Confidence 3 24566777787 6778899999976 2 1245543 3 2789999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 167 DIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 167 ~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+.|..|++| |.+. +++...+.+.... ......+|+|+|||+|.+|+|+|..|++.+. +|+++.+.+.
T Consensus 109 ~~~~~p~i~---G~~~----v~~~~~~~~~~~~-~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~-----~Vtlv~~~~~ 175 (377)
T PRK04965 109 ASAFVPPIP---GREL----MLTLNSQQEYRAA-ETQLRDAQRVLVVGGGLIGTELAMDLCRAGK-----AVTLVDNAAS 175 (377)
T ss_pred CCCCCCCCC---CCce----EEEECCHHHHHHH-HHHhhcCCeEEEECCCHHHHHHHHHHHhcCC-----eEEEEecCCc
Confidence 558888899 8653 3332222221000 0112367999999999999999999998754 5999998875
Q ss_pred eeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccc
Q 041145 247 WTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYAS 326 (522)
Q Consensus 247 ~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 326 (522)
.. ++.. ...
T Consensus 176 ~l-~~~~--------------------------------------~~~-------------------------------- 184 (377)
T PRK04965 176 LL-ASLM--------------------------------------PPE-------------------------------- 184 (377)
T ss_pred cc-chhC--------------------------------------CHH--------------------------------
Confidence 21 1100 000
Q ss_pred ccccccCcchhhhcccCcEEEEeCc-eeEEecC----cEEecCCceeeccEEEEeccCCCCccccccCCCcccccccCcc
Q 041145 327 CQMAILPENFFSEAEKGNILFKRAS-KWWFWSG----GIEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSS 401 (522)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~ 401 (522)
+...+.+.+++.+|+++.+. +.+++.+ .|.+.||+++++|.||+|+|++++..+.... ++.. ..
T Consensus 185 -----~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~-----gl~~-~~ 253 (377)
T PRK04965 185 -----VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA-----GLAV-NR 253 (377)
T ss_pred -----HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC-----CCCc-CC
Confidence 01112233445677777665 7777653 2778899999999999999999985432111 1111 22
Q ss_pred cccccccccccCCCCceeEeeccccc-----chhhHHHHHHHHHHHHhcCCC
Q 041145 402 GIMPLYRGTIHPLIPNMAFVGYIETV-----SNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 402 ~~~~l~~~~~~~~~pni~~vG~~~~~-----~~~~~ae~qa~~~a~~l~g~~ 448 (522)
++.+..++ .++.||||++|++... ..+..|..||+++|+.|.|..
T Consensus 254 -gi~vd~~l-~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 254 -GIVVDSYL-QTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred -CEEECCCc-ccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 34555543 4678999999976532 234568899999999999864
No 35
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.94 E-value=1e-25 Score=234.48 Aligned_cols=295 Identities=16% Similarity=0.169 Sum_probs=182.5
Q ss_pred cEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 13 KIGIIGAGISGIATAKQL----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
+|+|||||++|+++|..| .+.+|+|||+++.++ |..+..+.. ....+....++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~~~~~~-------------------~~~~~~~~~~~~~ 60 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGACGLPYF-------------------VGGFFDDPNTMIA 60 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecCCCceE-------------------eccccCCHHHhhc
Confidence 799999999999999998 356999999987653 111000000 0011222333344
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeC--CeeEEEEECEEEEeeeccC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETN--QAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~d~vViAtG~~s 166 (522)
+.....+++++ .+.++++|++++. +. . .|++.+. +....+.||+||+|||
T Consensus 61 ~~~~~~~~~gv--~~~~~~~V~~id~--~~-------------------~--~v~~~~~~~~~~~~~~yd~lviAtG--- 112 (444)
T PRK09564 61 RTPEEFIKSGI--DVKTEHEVVKVDA--KN-------------------K--TITVKNLKTGSIFNDTYDKLMIATG--- 112 (444)
T ss_pred CCHHHHHHCCC--eEEecCEEEEEEC--CC-------------------C--EEEEEECCCCCEEEecCCEEEECCC---
Confidence 44444556676 6778999999986 31 2 4555541 1122344999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccCCCchhh-hhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 167 DIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEA-ATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 167 ~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+.|+.|++| |.+. ..+++...+.+..... ......+++|+|||+|.+|+|+|..+...+. +|+++.+.+
T Consensus 113 ~~~~~~~i~---g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-----~Vtli~~~~ 182 (444)
T PRK09564 113 ARPIIPPIK---NINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGK-----NVRIIQLED 182 (444)
T ss_pred CCCCCCCCC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCC-----cEEEEeCCc
Confidence 558888888 7653 2344444432211000 0112357999999999999999999988754 599998877
Q ss_pred ceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCccccccc
Q 041145 246 HWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYA 325 (522)
Q Consensus 246 ~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 325 (522)
..+.+..+ ..+.
T Consensus 183 ~~l~~~~~---------------------------------------~~~~----------------------------- 194 (444)
T PRK09564 183 RILPDSFD---------------------------------------KEIT----------------------------- 194 (444)
T ss_pred ccCchhcC---------------------------------------HHHH-----------------------------
Confidence 52211110 0000
Q ss_pred cccccccCcchhhhcccCcEEEEeCc-eeEEecCc---EEecCCceeeccEEEEeccCCCCccccccCCCcccccccCcc
Q 041145 326 SCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG---IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSS 401 (522)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~---v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~ 401 (522)
+.+.+.+++.+|+++.+. +.++.+++ ....++.++++|.||+|||+.++..+.. . .++..+++
T Consensus 195 --------~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~---~--~gl~~~~~ 261 (444)
T PRK09564 195 --------DVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLE---D--TGLKTLKN 261 (444)
T ss_pred --------HHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHH---h--cCccccCC
Confidence 111123445567777665 66775443 2234556799999999999999853321 1 11211234
Q ss_pred cccccccccccCCCCceeEeeccccc-----------chhhHHHHHHHHHHHHhcCCC
Q 041145 402 GIMPLYRGTIHPLIPNMAFVGYIETV-----------SNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 402 ~~~~l~~~~~~~~~pni~~vG~~~~~-----------~~~~~ae~qa~~~a~~l~g~~ 448 (522)
+.+.+...+. ++.||||++|++... ...+.|..||+.+|+.|.|..
T Consensus 262 g~i~vd~~~~-t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 262 GAIIVDEYGE-TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred CCEEECCCcc-cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 5566665544 689999999976542 235789999999999998853
No 36
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.4e-25 Score=212.52 Aligned_cols=262 Identities=20% Similarity=0.263 Sum_probs=184.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCC-cEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYD-PLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELL 87 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (522)
.+||+||||||+||+||..+ .+++ ++|+|+ ...||.-.. .. ..-.|+.+ +.-....++.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~------~~----~venypg~-------~~~~~g~~L~ 64 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTK------TT----DVENYPGF-------PGGILGPELM 64 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcccc------ce----eecCCCCC-------ccCCchHHHH
Confidence 67999999999999999999 8888 555555 445533221 00 00011111 2234677888
Q ss_pred HHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCC-CEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 88 DYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHP-VWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 88 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
+-++..+.+++. .+.. ..|..++. .+ .+.|++.++ +++++.||||||.
T Consensus 65 ~~~~~~a~~~~~--~~~~-~~v~~v~~----------------------~~~~F~v~t~~~----~~~ak~vIiAtG~-- 113 (305)
T COG0492 65 EQMKEQAEKFGV--EIVE-DEVEKVEL----------------------EGGPFKVKTDKG----TYEAKAVIIATGA-- 113 (305)
T ss_pred HHHHHHHhhcCe--EEEE-EEEEEEee----------------------cCceEEEEECCC----eEEEeEEEECcCC--
Confidence 888888888886 3333 66777765 22 577877766 5999999999995
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 167 DIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 167 ~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.++.|.+| |.++|.|+-+|.+...+ . .+++|+|+|||+|.||+|-|..|++.+. +||++.|++.
T Consensus 114 -~~~~~~~~---~e~e~~g~gv~yc~~cd------g-~~~~k~v~ViGgG~sAve~Al~L~~~a~-----~Vtlv~r~~~ 177 (305)
T COG0492 114 -GARKLGVP---GEEEFEGKGVSYCATCD------G-FFKGKDVVVIGGGDSAVEEALYLSKIAK-----KVTLVHRRDE 177 (305)
T ss_pred -cccCCCCC---cchhhcCCceEEeeecC------c-cccCCeEEEEcCCHHHHHHHHHHHHhcC-----eEEEEecCcc
Confidence 47888888 77789998888888876 4 5899999999999999999999999965 4999999885
Q ss_pred eeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccc
Q 041145 247 WTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYAS 326 (522)
Q Consensus 247 ~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 326 (522)
.-.
T Consensus 178 ~ra----------------------------------------------------------------------------- 180 (305)
T COG0492 178 FRA----------------------------------------------------------------------------- 180 (305)
T ss_pred cCc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred ccccccCcchhhhcc-cCcEEEEeCc-eeEEec---CcEEecCC--c--eeeccEEEEeccCCCCccccccCCCcccccc
Q 041145 327 CQMAILPENFFSEAE-KGNILFKRAS-KWWFWS---GGIEFEDK--S--KLEADVVLLATGYDGKKKLQSILPKPFSSLL 397 (522)
Q Consensus 327 ~~~~~~~~~~~~~l~-~~~v~v~~~~-i~~~~~---~~v~~~dG--~--~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~ 397 (522)
.+...+.++ ..+|.++.+. +.++.+ ++|++++. + ++++|-|..+.|+.|+..+. .... .
T Consensus 181 ------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~----~~~~-~- 248 (305)
T COG0492 181 ------EEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELL----KGLG-V- 248 (305)
T ss_pred ------CHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHH----hhcc-c-
Confidence 000111222 2378887775 788877 46888874 3 47899999999999995332 1111 1
Q ss_pred cCcccccccccccccCCCCceeEeeccccc
Q 041145 398 ADSSGIMPLYRGTIHPLIPNMAFVGYIETV 427 (522)
Q Consensus 398 ~~~~~~~~l~~~~~~~~~pni~~vG~~~~~ 427 (522)
.++++.+.+... +.+++|+||++|++...
T Consensus 249 ~~~~g~I~v~~~-~~TsvpGifAaGDv~~~ 277 (305)
T COG0492 249 LDENGYIVVDEE-METSVPGIFAAGDVADK 277 (305)
T ss_pred cCCCCcEEcCCC-cccCCCCEEEeEeeccC
Confidence 245565555555 77899999999977653
No 37
>PTZ00058 glutathione reductase; Provisional
Probab=99.94 E-value=2.4e-25 Score=233.69 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=187.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCccc----CCCCCCCCCCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEF----SDYPWPERDDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 83 (522)
++||+|||||++|++||..+ .|.+|+|||++ .+||+|.+. |.|+..+......+.. ..+.+.. ..-...
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~---~~~~d~ 123 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT---QFSFNL 123 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc---cCccCH
Confidence 67999999999999999999 89999999996 699998764 5666554443333221 1111110 001222
Q ss_pred HHHHHHHHHH-----------HHhcCCcCceEece-EEEE-----EEEcCCCCcccccCCccccCCCCCCCCCEEEE---
Q 041145 84 VELLDYLHGY-----------AVHFDVLKYIKFNS-KVVE-----IRHLGDRDTARVSDTAGEYGSLLKGHPVWEVA--- 143 (522)
Q Consensus 84 ~~~~~yl~~~-----------~~~~~l~~~i~~~~-~V~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--- 143 (522)
..+.+....+ .++.++ .+..++ ++++ |.+.+ +..++....+ ....+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~G~a~f~~~~~v~v~~~~--------~~~~~~~~~~--~~~~~v~~~~ 191 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNV--EYFEGKGSLLSENQVLIKKVS--------QVDGEADESD--DDEVTIVSAG 191 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCc--EEEEEEEEEecCCEEEeeccc--------cccccccccc--cccceeeecc
Confidence 3333332222 233333 122121 1111 00000 0000000000 1112221
Q ss_pred ---EEeCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHH
Q 041145 144 ---VETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAI 220 (522)
Q Consensus 144 ---~~~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~ 220 (522)
..++ .++.||+|||||| +.|..|++| |.+ .++++.++..+ ..+|+|+|||+|.+|+
T Consensus 192 ~~~~~~g---~~i~ad~lVIATG---S~P~~P~Ip---G~~----~v~ts~~~~~l--------~~pk~VvIIGgG~iGl 250 (561)
T PTZ00058 192 VSQLDDG---QVIEGKNILIAVG---NKPIFPDVK---GKE----FTISSDDFFKI--------KEAKRIGIAGSGYIAV 250 (561)
T ss_pred ceecCCC---cEEECCEEEEecC---CCCCCCCCC---Cce----eEEEHHHHhhc--------cCCCEEEEECCcHHHH
Confidence 1122 3699999999999 568999999 864 14555444331 1379999999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHH
Q 041145 221 DLAVECAEANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIE 300 (522)
Q Consensus 221 dia~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (522)
|+|..++..+. +||++.|.+.. +|..+. .
T Consensus 251 E~A~~l~~~G~-----~Vtli~~~~~i-l~~~d~---------------------------------------~------ 279 (561)
T PTZ00058 251 ELINVVNRLGA-----ESYIFARGNRL-LRKFDE---------------------------------------T------ 279 (561)
T ss_pred HHHHHHHHcCC-----cEEEEEecccc-cccCCH---------------------------------------H------
Confidence 99999998865 49999998752 232210 0
Q ss_pred HHHhhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC---c--EEecCC-ceeeccEE
Q 041145 301 SYLVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG---G--IEFEDK-SKLEADVV 373 (522)
Q Consensus 301 ~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~---~--v~~~dG-~~~~~D~V 373 (522)
+.+.+.+.+++.+|+++.+. +.+++++ + +.+.++ +++++|.|
T Consensus 280 -------------------------------i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~V 328 (561)
T PTZ00058 280 -------------------------------IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYV 328 (561)
T ss_pred -------------------------------HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEE
Confidence 11112234556678888776 6777642 2 334454 46999999
Q ss_pred EEeccCCCCccccccCCCcccccccCcccccccccccccCCCCceeEeecccc---------------------------
Q 041145 374 LLATGYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET--------------------------- 426 (522)
Q Consensus 374 I~ATG~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~--------------------------- 426 (522)
|+|||++|+..+. ......+. .+++.+.+...+ .++.||||++|++.+
T Consensus 329 lvA~Gr~Pn~~~L---~l~~~~~~-~~~G~I~VDe~l-qTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 403 (561)
T PTZ00058 329 IYCVGRSPNTEDL---NLKALNIK-TPKGYIKVDDNQ-RTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKEN 403 (561)
T ss_pred EECcCCCCCcccc---Ccccccee-cCCCeEEECcCC-ccCCCCEEEeEeccCccccccccccccccccccccccccccc
Confidence 9999999995322 11111111 234556666554 478999999998765
Q ss_pred --------cchhhHHHHHHHHHHHHhcCC
Q 041145 427 --------VSNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 427 --------~~~~~~ae~qa~~~a~~l~g~ 447 (522)
....+.|..||+.+|..+.|.
T Consensus 404 ~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 404 TSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred cccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 122478999999999999875
No 38
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.94 E-value=5.4e-25 Score=233.37 Aligned_cols=281 Identities=21% Similarity=0.252 Sum_probs=188.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.+||+|||||||||+||..| .|++|+|||++ .+||.+.... . ...+|. .......++.+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~---i~~~pg-----~~~~~~~~l~~ 64 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------E---VVNYPG-----ILNTTGPELMQ 64 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------c---cccCCC-----CcCCCHHHHHH
Confidence 36999999999999999999 89999999995 6888765310 0 001110 12345678889
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+++..++++++ .+ ++++|+.++. + ...+.|.+.++ .+.+|+||+||| +.
T Consensus 65 ~l~~~~~~~gv--~~-~~~~V~~i~~--~-------------------~~~~~V~~~~g----~~~a~~lVlATG---a~ 113 (555)
T TIGR03143 65 EMRQQAQDFGV--KF-LQAEVLDVDF--D-------------------GDIKTIKTARG----DYKTLAVLIATG---AS 113 (555)
T ss_pred HHHHHHHHcCC--EE-eccEEEEEEe--c-------------------CCEEEEEecCC----EEEEeEEEECCC---Cc
Confidence 99988988887 34 4778888876 2 22356665443 588999999999 45
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
|+.|++| |.+.|.+..+|.....+ ...+.+++|+|||+|.+|+|+|..|++.+. +||++.|++.+.
T Consensus 114 p~~~~ip---G~~~~~~~~v~~~~~~~------~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~-----~Vtli~~~~~~~ 179 (555)
T TIGR03143 114 PRKLGFP---GEEEFTGRGVAYCATCD------GEFFTGMDVFVIGGGFAAAEEAVFLTRYAS-----KVTVIVREPDFT 179 (555)
T ss_pred cCCCCCC---CHHHhCCceEEEEeecC------hhhcCCCEEEEECCCHHHHHHHHHHHccCC-----EEEEEEeCCccc
Confidence 8889999 98777776666544433 234678999999999999999999988754 599999987521
Q ss_pred ecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccccc
Q 041145 249 LPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQ 328 (522)
Q Consensus 249 ~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 328 (522)
.+. ... .
T Consensus 180 ~~~-----------------------------------------~~~----~---------------------------- 186 (555)
T TIGR03143 180 CAK-----------------------------------------LIA----E---------------------------- 186 (555)
T ss_pred cCH-----------------------------------------HHH----H----------------------------
Confidence 000 000 0
Q ss_pred ccccCcchhhhcccCcEEEEeCc-eeEEecCc----EEe---cCCcee----eccE----EEEeccCCCCccccccCCCc
Q 041145 329 MAILPENFFSEAEKGNILFKRAS-KWWFWSGG----IEF---EDKSKL----EADV----VLLATGYDGKKKLQSILPKP 392 (522)
Q Consensus 329 ~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~----v~~---~dG~~~----~~D~----VI~ATG~~~~~~l~~~~~~~ 392 (522)
..++..+|+++.+. +.++.+++ +.+ .+|++. ++|. ||+|+|++|+..+.. .
T Consensus 187 ---------~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~---~- 253 (555)
T TIGR03143 187 ---------KVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFK---G- 253 (555)
T ss_pred ---------HHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHh---h-
Confidence 11123467777665 66776543 222 357543 3666 999999999964321 1
Q ss_pred ccccccCcccccccccccccCCCCceeEeeccccc--chhhHHHHHHHHHHHHh
Q 041145 393 FSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV--SNLQIAEIRCKWLARLA 444 (522)
Q Consensus 393 ~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~--~~~~~ae~qa~~~a~~l 444 (522)
.+..++++.+.+...+ .++.||||++|++... ..+..|..|++.+|..+
T Consensus 254 --~l~l~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 254 --VVELDKRGYIPTNEDM-ETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred --hcccCCCCeEEeCCcc-ccCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence 1222334555555543 4689999999987532 23455777777777655
No 39
>PLN02546 glutathione reductase
Probab=99.94 E-value=2.7e-26 Score=240.95 Aligned_cols=301 Identities=16% Similarity=0.142 Sum_probs=184.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEcc---------CCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEA---------TNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPE 74 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~---------~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~ 74 (522)
.+||+|||||++|+.+|..+ .|.+|+|+|+ ...+||+|.+. |.|+..+........ ...+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 57999999999999999999 8999999996 24689999874 566555432222111 11122211
Q ss_pred CCCCCCCChHHHHHH-----------HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEE
Q 041145 75 RDDASFPSHVELLDY-----------LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVA 143 (522)
Q Consensus 75 ~~~~~~~~~~~~~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (522)
.. ..-.....+.++ +....++.++ .+. ..+++.++. -+|.
T Consensus 159 ~~-~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i-~G~a~~vd~-------------------------~~V~ 209 (558)
T PLN02546 159 ET-EPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLI-EGRGKIVDP-------------------------HTVD 209 (558)
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEE-EeEEEEccC-------------------------CEEE
Confidence 00 011223333332 2222233232 111 112222221 1355
Q ss_pred EEeCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHH
Q 041145 144 VETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLA 223 (522)
Q Consensus 144 ~~~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia 223 (522)
+ ++ +.+.||+|||||| +.|..|++| |.+. ++++.+... ....+++|+|||+|.+|+|+|
T Consensus 210 v-~G---~~~~~D~LVIATG---s~p~~P~Ip---G~~~----v~~~~~~l~-------~~~~~k~V~VIGgG~iGvE~A 268 (558)
T PLN02546 210 V-DG---KLYTARNILIAVG---GRPFIPDIP---GIEH----AIDSDAALD-------LPSKPEKIAIVGGGYIALEFA 268 (558)
T ss_pred E-CC---EEEECCEEEEeCC---CCCCCCCCC---Chhh----ccCHHHHHh-------ccccCCeEEEECCCHHHHHHH
Confidence 4 23 2689999999999 568899999 8753 233332222 123578999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHH
Q 041145 224 VECAEANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYL 303 (522)
Q Consensus 224 ~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (522)
..+++.+. +||++.|.+.. +|..+ ..+..
T Consensus 269 ~~L~~~g~-----~Vtlv~~~~~i-l~~~d---------------------------------------~~~~~------ 297 (558)
T PLN02546 269 GIFNGLKS-----DVHVFIRQKKV-LRGFD---------------------------------------EEVRD------ 297 (558)
T ss_pred HHHHhcCC-----eEEEEEecccc-ccccC---------------------------------------HHHHH------
Confidence 99998764 59999987752 22211 00111
Q ss_pred hhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc-E--EecCCceeeccEEEEec
Q 041145 304 VWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG-I--EFEDKSKLEADVVLLAT 377 (522)
Q Consensus 304 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~-v--~~~dG~~~~~D~VI~AT 377 (522)
.+.+.+++.+|+++.+. +.++.. ++ + .+.+|+...+|.||+|+
T Consensus 298 -------------------------------~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~ 346 (558)
T PLN02546 298 -------------------------------FVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFAT 346 (558)
T ss_pred -------------------------------HHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEee
Confidence 11133446678888776 666653 22 3 33455445589999999
Q ss_pred cCCCCccccccCCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCC
Q 041145 378 GYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 378 G~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~ 447 (522)
|++++..+. .....++..+.++.+.+..++. ++.||||++|++.+.. ..+.|..|++.+|+.+.|.
T Consensus 347 G~~Pnt~~L---~le~~gl~~d~~G~I~VD~~l~-Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 347 GRKPNTKNL---GLEEVGVKMDKNGAIEVDEYSR-TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred ccccCCCcC---ChhhcCCcCCCCCcEeECCCce-eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999995321 1111122223445566665544 6899999999887643 3578999999999999875
No 40
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.94 E-value=1.6e-25 Score=233.35 Aligned_cols=315 Identities=18% Similarity=0.209 Sum_probs=186.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccC-----C---CCCcccCCC-ccCcccccCCCCCccc----CCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEAT-----N---SIGGVWKHC-SFNSTKLQTPRCDFEF----SDYPWPER 75 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~-----~---~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (522)
.+||+|||||++|+.+|..+ .|.+|+|+|+. . .+||+|.+. |+|+..+......+.- ..+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 47999999999999999999 89999999973 1 589998764 7776654332221111 11111100
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCcCceEec-eEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEE
Q 041145 76 DDASFPSHVELLDYLHGYAVHFDVLKYIKFN-SKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWY 153 (522)
Q Consensus 76 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 153 (522)
. ..-.....+.++.+...++..-.-.-.+. ..|.-++-.+. +.+.. +|.+.+.++ .+++
T Consensus 82 ~-~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~----------------f~~~~--~v~v~~~~g~~~~~ 142 (484)
T TIGR01438 82 E-TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAE----------------FVDKH--RIKATNKKGKEKIY 142 (484)
T ss_pred C-CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEE----------------EcCCC--EEEEeccCCCceEE
Confidence 0 01234444555544444332100000010 11111111000 00022 355443222 3469
Q ss_pred EECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCC
Q 041145 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGP 233 (522)
Q Consensus 154 ~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~ 233 (522)
.||+|||||| +.|+.|++| |.+++ .+++.+.... ....++++|||+|.+|+|+|..+++.+.+
T Consensus 143 ~~d~lVIATG---s~p~~p~ip---G~~~~---~~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~G~~- 205 (484)
T TIGR01438 143 SAERFLIATG---ERPRYPGIP---GAKEL---CITSDDLFSL-------PYCPGKTLVVGASYVALECAGFLAGIGLD- 205 (484)
T ss_pred EeCEEEEecC---CCCCCCCCC---Cccce---eecHHHhhcc-------cccCCCEEEECCCHHHHHHHHHHHHhCCc-
Confidence 9999999999 568999999 87542 2333333321 12457899999999999999999998654
Q ss_pred CCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCC
Q 041145 234 NGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFG 313 (522)
Q Consensus 234 ~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (522)
||++.|. . ++|..+. .
T Consensus 206 ----Vtli~~~-~-~l~~~d~---------------------------------------~------------------- 221 (484)
T TIGR01438 206 ----VTVMVRS-I-LLRGFDQ---------------------------------------D------------------- 221 (484)
T ss_pred ----EEEEEec-c-cccccCH---------------------------------------H-------------------
Confidence 9999874 2 3332210 0
Q ss_pred CCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCc---eeeccEEEEeccCCCCccc
Q 041145 314 LKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKS---KLEADVVLLATGYDGKKKL 385 (522)
Q Consensus 314 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~---~~~~D~VI~ATG~~~~~~l 385 (522)
+.+.+.+.+++.+|+++.+. +.+++. +. |++++|+ ++++|.||+|+|++|+..+
T Consensus 222 ------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 222 ------------------CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred ------------------HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 11112233456678888776 555543 22 5566663 6999999999999999532
Q ss_pred cccCCCcccccccCc-ccccccccccccCCCCceeEeecccc--cchhhHHHHHHHHHHHHhcCC
Q 041145 386 QSILPKPFSSLLADS-SGIMPLYRGTIHPLIPNMAFVGYIET--VSNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~pni~~vG~~~~--~~~~~~ae~qa~~~a~~l~g~ 447 (522)
. .....++..++ ++.+.+... +.++.||||++|++.. ....+.|..|++.+++.+.|.
T Consensus 284 l---~l~~~gv~~~~~~G~I~Vd~~-~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 284 L---NLENVGVKINKKTGKIPADEE-EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred C---CcccccceecCcCCeEecCCC-cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 1 11111222222 244555544 4478999999998754 334578999999999999864
No 41
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.94 E-value=2e-25 Score=231.42 Aligned_cols=309 Identities=14% Similarity=0.091 Sum_probs=185.5
Q ss_pred CCcEEEECCCHHHHHHHHHhCCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCCCCCCCCCChHH
Q 041145 11 SSKIGIIGAGISGIATAKQLRHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPERDDASFPSHVE 85 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 85 (522)
++||+|||+|++|..+|..+.|.+|+++|+ ..+||+|.+. |.|+..+......+. ...+.+... ..-....+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~--~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE--IDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC--CCccCHHH
Confidence 579999999999999977669999999998 4699999874 566655432222211 111111100 11234555
Q ss_pred HHHHHHH-HHHhcCCc-CceE-----eceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEE
Q 041145 86 LLDYLHG-YAVHFDVL-KYIK-----FNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELL 158 (522)
Q Consensus 86 ~~~yl~~-~~~~~~l~-~~i~-----~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~v 158 (522)
+.++... ..+...-. .... .+.++..-.. . + .+.++|++.++. ++.||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~--~----------------~--~~~~~V~~~~g~---~~~~d~l 135 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHA--R----------------F--VGPRTLRTGDGE---EITGDQI 135 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEE--E----------------E--ecCCEEEECCCc---EEEeCEE
Confidence 6655543 22221000 0010 1222221100 0 0 123457665543 6899999
Q ss_pred EEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 041145 159 VMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPC 238 (522)
Q Consensus 159 ViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~V 238 (522)
||||| +.|..|+++ +... -.+..+.+...+ ...+|+|+|||+|.+|+|+|..++..+. +|
T Consensus 136 IiATG---s~p~~p~~~---~~~~--~~~~~~~~~~~l-------~~~~k~vvVIGgG~ig~E~A~~l~~~G~-----~V 195 (452)
T TIGR03452 136 VIAAG---SRPYIPPAI---ADSG--VRYHTNEDIMRL-------PELPESLVIVGGGYIAAEFAHVFSALGT-----RV 195 (452)
T ss_pred EEEEC---CCCCCCCCC---CCCC--CEEEcHHHHHhh-------hhcCCcEEEECCCHHHHHHHHHHHhCCC-----cE
Confidence 99999 557777644 3211 112222222211 1246899999999999999999998865 49
Q ss_pred EEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCC
Q 041145 239 TMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDH 318 (522)
Q Consensus 239 t~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 318 (522)
|++.|.+.. +|..+ ..+...+.
T Consensus 196 tli~~~~~l-l~~~d---------------------------------------~~~~~~l~------------------ 217 (452)
T TIGR03452 196 TIVNRSTKL-LRHLD---------------------------------------EDISDRFT------------------ 217 (452)
T ss_pred EEEEccCcc-ccccC---------------------------------------HHHHHHHH------------------
Confidence 999988752 22111 00000000
Q ss_pred ccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCCccccccCCCcc
Q 041145 319 PFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPF 393 (522)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~ 393 (522)
+.+ +.+|+++.+. +.+++. ++ +.+.+|+++++|.||+|+|++|+..+. ....
T Consensus 218 -------------------~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l---~~~~ 274 (452)
T TIGR03452 218 -------------------EIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLL---DAEA 274 (452)
T ss_pred -------------------HHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCc---Cchh
Confidence 111 2246777665 666653 23 456688889999999999999995332 1111
Q ss_pred cccccCcccccccccccccCCCCceeEeecccccch-hhHHHHHHHHHHHHhcCC
Q 041145 394 SSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVSN-LQIAEIRCKWLARLADQK 447 (522)
Q Consensus 394 ~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~-~~~ae~qa~~~a~~l~g~ 447 (522)
.++..++++.+.+..++. ++.||||++|++..... .+.|..||+.+|+.+.|.
T Consensus 275 ~gl~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 275 AGVEVDEDGRIKVDEYGR-TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred cCeeECCCCcEeeCCCcc-cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 122223455566666654 89999999998876543 478999999999999865
No 42
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.94 E-value=2.2e-25 Score=244.14 Aligned_cols=291 Identities=15% Similarity=0.180 Sum_probs=190.7
Q ss_pred CCcEEEECCCHHHHHHHHHh------CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChH
Q 041145 11 SSKIGIIGAGISGIATAKQL------RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHV 84 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
+++|||||+|++|+.+|.+| .+++|+||++.+.+ .|..+.+.. .+.. ...+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~-------~Y~r~~L~~-----~~~~-----------~~~~ 59 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI-------AYDRVHLSS-----YFSH-----------HTAE 59 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC-------cccCCcchH-----hHcC-----------CCHH
Confidence 34899999999999999998 24799999998765 233222100 0000 1122
Q ss_pred HHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeec
Q 041145 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGK 164 (522)
Q Consensus 85 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~ 164 (522)
++......+.++.++ .+..+++|+.++. + ...|++.++. ++.||+||||||
T Consensus 60 ~l~~~~~~~~~~~gI--~~~~g~~V~~Id~--~---------------------~~~V~~~~G~---~i~yD~LVIATG- 110 (847)
T PRK14989 60 ELSLVREGFYEKHGI--KVLVGERAITINR--Q---------------------EKVIHSSAGR---TVFYDKLIMATG- 110 (847)
T ss_pred HccCCCHHHHHhCCC--EEEcCCEEEEEeC--C---------------------CcEEEECCCc---EEECCEEEECCC-
Confidence 333333444556677 6778889998876 2 1246665553 799999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 165 FGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 165 ~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
+.|..|++| |.+.. .++......+.... ......+++++|||+|.+|+|+|..|++.+. +||++.+.
T Consensus 111 --s~p~~p~ip---G~~~~--~v~~~rt~~d~~~l-~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~-----~VtvVe~~ 177 (847)
T PRK14989 111 --SYPWIPPIK---GSETQ--DCFVYRTIEDLNAI-EACARRSKRGAVVGGGLLGLEAAGALKNLGV-----ETHVIEFA 177 (847)
T ss_pred --CCcCCCCCC---CCCCC--CeEEECCHHHHHHH-HHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----eEEEEecc
Confidence 568999999 87642 12222222221100 0112367899999999999999999999865 49999988
Q ss_pred CceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccc
Q 041145 245 LHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDY 324 (522)
Q Consensus 245 ~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 324 (522)
+.++ |+.. .....
T Consensus 178 ~~ll-~~~l--------------------------------------d~~~~---------------------------- 190 (847)
T PRK14989 178 PMLM-AEQL--------------------------------------DQMGG---------------------------- 190 (847)
T ss_pred ccch-hhhc--------------------------------------CHHHH----------------------------
Confidence 7522 2110 00011
Q ss_pred ccccccccCcchhhhcccCcEEEEeCc-eeEEecC------cEEecCCceeeccEEEEeccCCCCccccccCCCcccccc
Q 041145 325 ASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG------GIEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLL 397 (522)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~------~v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~ 397 (522)
..+.+.+++.+|+++.+. +.++.++ .+.++||+++++|.||+|+|++|+..+.. -.++.
T Consensus 191 ---------~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~-----~~Gl~ 256 (847)
T PRK14989 191 ---------EQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLAT-----QCGLA 256 (847)
T ss_pred ---------HHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHh-----hcCcc
Confidence 112233456678888876 6777532 37789999999999999999999954321 11222
Q ss_pred cCcccccccccccccCCCCceeEeecccccc-----hhhHHHHHHHHHHHHhcCCC
Q 041145 398 ADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-----NLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 398 ~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-----~~~~ae~qa~~~a~~l~g~~ 448 (522)
.++.+.+.+..++. ++.||||++|...... ....+..||+.+|..|.|..
T Consensus 257 ~~~~G~I~VD~~l~-Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 257 VAPRGGIVINDSCQ-TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred CCCCCcEEECCCCc-CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 23455666766654 6799999999765421 24678899999999998864
No 43
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.94 E-value=1.1e-24 Score=226.89 Aligned_cols=311 Identities=15% Similarity=0.077 Sum_probs=187.2
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcc----cCCCCCCCC-CCCCCCChH
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFE----FSDYPWPER-DDASFPSHV 84 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 84 (522)
+|+|||||++|+.+|..+ .|.+|+++|+. .+||+|.+. +.|+..+......+. ...+.+... .........
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 899999999999999999 79999999987 489998763 444433211111000 011111100 001112333
Q ss_pred HHHHHHHHH-----------HHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEE
Q 041145 85 ELLDYLHGY-----------AVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153 (522)
Q Consensus 85 ~~~~yl~~~-----------~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (522)
.+.++.+.. ++++++ .+. ..+++.++...+ .....|+..+++ .+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~-~g~~~~~~~~~~-------------------~~~v~V~~~~g~-~~~~ 138 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGV--RVI-AGRGRLIDPGLG-------------------PHRVKVTTADGG-EETL 138 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--EEE-EEEEEEeecccC-------------------CCEEEEEeCCCc-eEEE
Confidence 444433333 333333 222 223333221001 223334333321 2468
Q ss_pred EECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCC
Q 041145 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGP 233 (522)
Q Consensus 154 ~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~ 233 (522)
.||+||+||| +.|..|+.+ +.+. ..++++.+..+. ...+++|+|||+|.+|+|+|..|++.+.
T Consensus 139 ~~d~lViATG---s~p~~~p~~---~~~~--~~v~~~~~~~~~-------~~~~~~vvVIGgG~ig~E~A~~l~~~g~-- 201 (466)
T PRK07845 139 DADVVLIATG---ASPRILPTA---EPDG--ERILTWRQLYDL-------DELPEHLIVVGSGVTGAEFASAYTELGV-- 201 (466)
T ss_pred ecCEEEEcCC---CCCCCCCCC---CCCC--ceEEeehhhhcc-------cccCCeEEEECCCHHHHHHHHHHHHcCC--
Confidence 9999999999 457766554 3321 234555444332 1246899999999999999999998865
Q ss_pred CCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCC
Q 041145 234 NGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFG 313 (522)
Q Consensus 234 ~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (522)
+||++.+.+. ++|..+ ..+
T Consensus 202 ---~Vtli~~~~~-~l~~~d---------------------------------------~~~------------------ 220 (466)
T PRK07845 202 ---KVTLVSSRDR-VLPGED---------------------------------------ADA------------------ 220 (466)
T ss_pred ---eEEEEEcCCc-CCCCCC---------------------------------------HHH------------------
Confidence 5999998775 222211 000
Q ss_pred CCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEe--cCc--EEecCCceeeccEEEEeccCCCCcccccc
Q 041145 314 LKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFW--SGG--IEFEDKSKLEADVVLLATGYDGKKKLQSI 388 (522)
Q Consensus 314 l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~--~~~--v~~~dG~~~~~D~VI~ATG~~~~~~l~~~ 388 (522)
.+.+.+.+++.+|+++.+. +.+++ +++ +.+.+|+++++|.||+|+|++|+..+..
T Consensus 221 -------------------~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~- 280 (466)
T PRK07845 221 -------------------AEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLG- 280 (466)
T ss_pred -------------------HHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCC-
Confidence 0111233456678888776 77774 233 5667898999999999999999953211
Q ss_pred CCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCCC
Q 041145 389 LPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~~ 448 (522)
..-.++..++.+.+.+...+ .++.||||++|+..+.. ..+.|..|++.++..+.|..
T Consensus 281 --l~~~gl~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 338 (466)
T PRK07845 281 --LEEAGVELTPSGHITVDRVS-RTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEA 338 (466)
T ss_pred --chhhCceECCCCcEeECCCc-ccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCC
Confidence 11112222345556666654 46899999999887643 35789999999999988753
No 44
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.93 E-value=4.5e-25 Score=230.65 Aligned_cols=312 Identities=17% Similarity=0.119 Sum_probs=185.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcccC----CCCCCCCCCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEFS----DYPWPERDDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 83 (522)
.+||+|||||++|+++|..| .|.+|+|+|+. .+||+|.+. +.|+..+......+... .+.+... ....+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~ 80 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS--GPALDF 80 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC--CCccCH
Confidence 67999999999999999999 89999999996 799999763 55554432222211111 1111100 011222
Q ss_pred HHHHHH-------HH----HHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 84 VELLDY-------LH----GYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 84 ~~~~~y-------l~----~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
..+.++ +. ...++.++ .+. ..+++.++... +.+..+.+.|.+.+++ .++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~-~g~a~~i~~~~----------------~~~~~~~~~v~~~~g~-~~~ 140 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKI--DVF-HGIGRILGPSI----------------FSPMPGTVSVETETGE-NEM 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--EEE-EEEEEEeCCCC----------------CcCCceEEEEEeCCCc-eEE
Confidence 333332 22 22233333 222 23444443310 0000234555544331 247
Q ss_pred EEECEEEEeeeccCCCCCCCCCCCCCCccccCCc-eeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcC
Q 041145 153 YGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGK-VLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQ 231 (522)
Q Consensus 153 ~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~ 231 (522)
+.||+|||||| +.|+.| | |.. +.+. ++++.+.... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 141 ~~~d~lViATG---s~p~~~--p---~~~-~~~~~~~~~~~~~~~-------~~~~~~vvIIGgG~~G~E~A~~l~~~g~ 204 (472)
T PRK05976 141 IIPENLLIATG---SRPVEL--P---GLP-FDGEYVISSDEALSL-------ETLPKSLVIVGGGVIGLEWASMLADFGV 204 (472)
T ss_pred EEcCEEEEeCC---CCCCCC--C---CCC-CCCceEEcchHhhCc-------cccCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 89999999999 446543 3 332 2232 4454443321 1246899999999999999999998765
Q ss_pred CCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccc
Q 041145 232 GPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVK 311 (522)
Q Consensus 232 ~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (522)
+||++.|.+. ++|..+ ..
T Consensus 205 -----~Vtli~~~~~-il~~~~---------------------------------------~~----------------- 222 (472)
T PRK05976 205 -----EVTVVEAADR-ILPTED---------------------------------------AE----------------- 222 (472)
T ss_pred -----eEEEEEecCc-cCCcCC---------------------------------------HH-----------------
Confidence 5999999875 233221 00
Q ss_pred CCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEe---cCcE---EecCCc--eeeccEEEEeccCCCC
Q 041145 312 FGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFW---SGGI---EFEDKS--KLEADVVLLATGYDGK 382 (522)
Q Consensus 312 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~---~~~v---~~~dG~--~~~~D~VI~ATG~~~~ 382 (522)
+...+.+.+++.+|+++.+. +.+++ ++++ .+.+|+ ++++|.||+|||.+++
T Consensus 223 --------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 223 --------------------LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred --------------------HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 01111233456678888876 77775 3443 335674 5899999999999998
Q ss_pred ccccccCCCcccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhcCCC
Q 041145 383 KKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 383 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~~ 448 (522)
... +......+. ...+.+.+...+ .++.||+|++|...+. ...+.|..|++.++..+.|..
T Consensus 283 ~~~---l~l~~~~~~-~~~g~i~Vd~~l-~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 283 TEG---IGLENTDID-VEGGFIQIDDFC-QTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred CCC---CCchhcCce-ecCCEEEECCCc-ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 532 111111121 123445555544 3678999999987643 346789999999999998764
No 45
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.93 E-value=1.2e-24 Score=226.54 Aligned_cols=308 Identities=14% Similarity=0.105 Sum_probs=182.7
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCccc----CCCCCCCCCCCCCCChHH
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEF----SDYPWPERDDASFPSHVE 85 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 85 (522)
+|+|||||++|+++|..+ .|.+|+|+|+. .+||+|.+. +.|+..+......+.. ..+...........+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 799999999999999999 89999999996 589998763 5554433211111110 111111110011234455
Q ss_pred HHHHHHHHHHhc--CCcCceEe---ceEEEE--EEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEE
Q 041145 86 LLDYLHGYAVHF--DVLKYIKF---NSKVVE--IRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELL 158 (522)
Q Consensus 86 ~~~yl~~~~~~~--~l~~~i~~---~~~V~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~v 158 (522)
+..+.....++. +. ...+ +.++.. +... + .....|+. .++.+++.||+|
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~g~a~~~-~-------------------~~~v~v~~--~~~~~~~~~d~l 136 (458)
T PRK06912 81 MQARKSQIVTQLVQGI--QYLMKKNKIKVIQGKASFE-T-------------------DHRVRVEY--GDKEEVVDAEQF 136 (458)
T ss_pred HHHHHHHHHHHHHHHH--HHHHhhCCcEEEEEEEEEc-c-------------------CCEEEEee--CCCcEEEECCEE
Confidence 555544443331 11 0011 111111 1111 1 22233333 222246999999
Q ss_pred EEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 041145 159 VMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPC 238 (522)
Q Consensus 159 ViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~V 238 (522)
||||| +.|..|+++ |.+. ..++++.+...+ ...+++|+|||+|.+|+|+|..+.+.+. +|
T Consensus 137 viATG---s~p~~~p~~---~~~~--~~v~~~~~~~~~-------~~~~~~vvIIGgG~iG~E~A~~l~~~g~-----~V 196 (458)
T PRK06912 137 IIAAG---SEPTELPFA---PFDG--KWIINSKHAMSL-------PSIPSSLLIVGGGVIGCEFASIYSRLGT-----KV 196 (458)
T ss_pred EEeCC---CCCCCCCCC---CCCC--CeEEcchHHhCc-------cccCCcEEEECCCHHHHHHHHHHHHcCC-----eE
Confidence 99999 557777677 5432 124555433321 1236899999999999999999988754 59
Q ss_pred EEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCC
Q 041145 239 TMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDH 318 (522)
Q Consensus 239 t~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ 318 (522)
|++.|.+.. +|..+ ..+
T Consensus 197 tli~~~~~l-l~~~d---------------------------------------~e~----------------------- 213 (458)
T PRK06912 197 TIVEMAPQL-LPGED---------------------------------------EDI----------------------- 213 (458)
T ss_pred EEEecCCCc-Ccccc---------------------------------------HHH-----------------------
Confidence 999988752 22110 000
Q ss_pred ccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCc--EEec-CCc--eeeccEEEEeccCCCCccccccCCCc
Q 041145 319 PFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG--IEFE-DKS--KLEADVVLLATGYDGKKKLQSILPKP 392 (522)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~--v~~~-dG~--~~~~D~VI~ATG~~~~~~l~~~~~~~ 392 (522)
.+.+.+.+++.+|+++.+. +.+++.++ +.+. +|+ ++++|.||+|||++|+... +...
T Consensus 214 --------------~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~---l~l~ 276 (458)
T PRK06912 214 --------------AHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ---LNLE 276 (458)
T ss_pred --------------HHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCC---CCch
Confidence 1111233446678888876 77776533 4443 443 5899999999999998532 1111
Q ss_pred ccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhcCC
Q 041145 393 FSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 393 ~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~g~ 447 (522)
..++..++.+ +.+..++. ++.||+|++|+..+. ...+.|..|++.+|..+.|.
T Consensus 277 ~~gv~~~~~g-i~Vd~~~~-ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 277 KAGVQFSNKG-ISVNEHMQ-TNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred hcCceecCCC-EEeCCCee-cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 1112222333 55655544 678999999987753 34578999999999999875
No 46
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.93 E-value=1.1e-24 Score=227.63 Aligned_cols=309 Identities=17% Similarity=0.167 Sum_probs=184.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEcc------CCCCCcccCCC-ccCcccccCCCCCcc-c----CCCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEA------TNSIGGVWKHC-SFNSTKLQTPRCDFE-F----SDYPWPERD 76 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~------~~~~GG~w~~~-~~~~~~~~~~~~~~~-~----~~~~~~~~~ 76 (522)
.+||+|||||++|++||..+ .|.+|+|+|+ ...+||+|.+. ++|...+......+. + ..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 57999999999999999999 8999999998 36789999764 445433211111111 0 11111100
Q ss_pred CCCCCChHHHHHHHH-----------HHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEE
Q 041145 77 DASFPSHVELLDYLH-----------GYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVE 145 (522)
Q Consensus 77 ~~~~~~~~~~~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (522)
..-....++.+... ...+..++ .+ +..++..++. + ...++|.+.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~g~~~~~~~--~-------------------~~~~~v~v~ 137 (475)
T PRK06327 83 -GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI--TV-LKGRGSFVGK--T-------------------DAGYEIKVT 137 (475)
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EE-EEEEEEEecC--C-------------------CCCCEEEEe
Confidence 00112233333222 22222232 11 2233434433 1 234677775
Q ss_pred eCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceee-ccccCCCchhhhhhccCCCeEEEECCCCCHHHHHH
Q 041145 146 TNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLH-SMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAV 224 (522)
Q Consensus 146 ~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~h-s~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~ 224 (522)
.++ ..++.||+||+||| +.|+.| | +.. +.+..++ +..... ....+|+|+|||+|.+|+|+|.
T Consensus 138 ~~~-~~~~~~d~lViATG---s~p~~~--p---~~~-~~~~~~~~~~~~~~-------~~~~~~~vvVvGgG~~g~E~A~ 200 (475)
T PRK06327 138 GED-ETVITAKHVIIATG---SEPRHL--P---GVP-FDNKIILDNTGALN-------FTEVPKKLAVIGAGVIGLELGS 200 (475)
T ss_pred cCC-CeEEEeCEEEEeCC---CCCCCC--C---CCC-CCCceEECcHHHhc-------ccccCCeEEEECCCHHHHHHHH
Confidence 321 13799999999999 446543 3 322 2233233 322221 1135699999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHh
Q 041145 225 ECAEANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLV 304 (522)
Q Consensus 225 ~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (522)
.+++.+. +||++.|++.+ +|..+
T Consensus 201 ~l~~~g~-----~Vtli~~~~~~-l~~~d--------------------------------------------------- 223 (475)
T PRK06327 201 VWRRLGA-----EVTILEALPAF-LAAAD--------------------------------------------------- 223 (475)
T ss_pred HHHHcCC-----eEEEEeCCCcc-CCcCC---------------------------------------------------
Confidence 9998865 59999998752 22110
Q ss_pred hcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC--c--EEecC--C--ceeeccEEEE
Q 041145 305 WKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG--G--IEFED--K--SKLEADVVLL 375 (522)
Q Consensus 305 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~--v~~~d--G--~~~~~D~VI~ 375 (522)
+.+.+.+.+.+++.+|+++.+. +.+++.+ + +.+++ | +++++|.||+
T Consensus 224 -------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~ 278 (475)
T PRK06327 224 -------------------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIV 278 (475)
T ss_pred -------------------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEE
Confidence 0001111233446678888775 7777643 3 44554 3 4589999999
Q ss_pred eccCCCCccccccCCCcccccccCcccccccccccccCCCCceeEeecccc-cchhhHHHHHHHHHHHHhcCCC
Q 041145 376 ATGYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET-VSNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 376 ATG~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~-~~~~~~ae~qa~~~a~~l~g~~ 448 (522)
|+|++|+.... ......+..++++.+.+...+ .++.||||++|.... +...+.|..|++.+|..+.|..
T Consensus 279 a~G~~p~~~~l---~~~~~g~~~~~~G~i~vd~~~-~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 279 SIGRVPNTDGL---GLEAVGLKLDERGFIPVDDHC-RTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred ccCCccCCCCC---CcHhhCceeCCCCeEeECCCC-ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 99999995321 111112222344556666554 468999999998765 3346789999999999998754
No 47
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.93 E-value=3.1e-25 Score=219.68 Aligned_cols=203 Identities=23% Similarity=0.330 Sum_probs=127.2
Q ss_pred CCcEEEECCCHHHHHHHHHh---CCCCcEEEccCCCCCcccCCC-ccCcccccCC--CCCcccCCC--CC-------CCC
Q 041145 11 SSKIGIIGAGISGIATAKQL---RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTP--RCDFEFSDY--PW-------PER 75 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l---~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~--~~~~~~~~~--~~-------~~~ 75 (522)
.+|+++||+||++|+.|..| ...++..||+.+.+ .|+.. ..++.+++++ +++.++.+- |+ ...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 46999999999999999999 56899999998754 57764 3566666654 222222211 11 000
Q ss_pred -------CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC
Q 041145 76 -------DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ 148 (522)
Q Consensus 76 -------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (522)
....+|++.++.+|+++++++++. .++|+++|++|++..+.. ...|.|++++..
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~-----------------~~~~~V~~~~~~ 140 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGD-----------------EDLFRVTTRDSD 140 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETT-----------------EEEEEEEEEETT
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCC-----------------ccEEEEEEeecC
Confidence 014568999999999999999874 699999999999843210 135889886543
Q ss_pred e-eEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHH
Q 041145 149 A-IQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECA 227 (522)
Q Consensus 149 ~-~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~ 227 (522)
+ ..++.++.||+|+| ..|.+|... ........++|+.+|.... ....++++|+|||||.||.|++..|.
T Consensus 141 g~~~~~~ar~vVla~G---~~P~iP~~~---~~~~~~~~v~Hss~~~~~~----~~~~~~~~V~VVGgGQSAAEi~~~L~ 210 (341)
T PF13434_consen 141 GDGETYRARNVVLATG---GQPRIPEWF---QDLPGSPRVFHSSEYLSRI----DQSLAGKRVAVVGGGQSAAEIFLDLL 210 (341)
T ss_dssp S-EEEEEESEEEE-------EE---GGG---GGGTT-TTEEEGGGHHHHH----T-----EEEEEE-SSHHHHHHHHHHH
T ss_pred CCeeEEEeCeEEECcC---CCCCCCcch---hhcCCCCCEEEehHhhhcc----ccccCCCeEEEECCcHhHHHHHHHHH
Confidence 3 56899999999999 458888744 2111236899999997532 12467899999999999999999999
Q ss_pred HhcCCCCCCcEEEEeecCce
Q 041145 228 EANQGPNGQPCTMVIRTLHW 247 (522)
Q Consensus 228 ~~~~~~~~~~Vt~v~R~~~~ 247 (522)
+.+.. .+|+|+.|++..
T Consensus 211 ~~~~~---~~V~~i~R~~~~ 227 (341)
T PF13434_consen 211 RRGPE---AKVTWISRSPGF 227 (341)
T ss_dssp HH-TT---EEEEEEESSSS-
T ss_pred hCCCC---cEEEEEECCCcc
Confidence 98652 579999999863
No 48
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.93 E-value=9.5e-25 Score=223.21 Aligned_cols=292 Identities=12% Similarity=0.134 Sum_probs=178.8
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CC--CCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChH
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RH--YDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHV 84 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (522)
|+.++|+|||||+||++||..| .+ .+|+|+++.+.. .|.... .++ .+...+..+ ..+...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~-------~y~r~~--l~~---~~~~~~~~~---~~~~~~- 64 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL-------PYERPP--LSK---SMLLEDSPQ---LQQVLP- 64 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC-------CCCCCC--CCH---HHHCCCCcc---ccccCC-
Confidence 3456899999999999999999 44 489999998643 121110 000 000000000 111111
Q ss_pred HHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeec
Q 041145 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGK 164 (522)
Q Consensus 85 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~ 164 (522)
..+..+.++ .+..+++|+.++. + ...|.+.++. ++.||+||+|||
T Consensus 65 ------~~~~~~~~i--~~~~g~~V~~id~--~---------------------~~~v~~~~g~---~~~yd~LViATG- 109 (396)
T PRK09754 65 ------ANWWQENNV--HLHSGVTIKTLGR--D---------------------TRELVLTNGE---SWHWDQLFIATG- 109 (396)
T ss_pred ------HHHHHHCCC--EEEcCCEEEEEEC--C---------------------CCEEEECCCC---EEEcCEEEEccC-
Confidence 112233455 5677888988876 2 1246666554 799999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 165 FGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 165 ~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
+.|+.|+++ +.. ...++......+... .......+|+|+|||+|.+|+|+|..|++.+. +||++.+.
T Consensus 110 --s~~~~~p~~---~~~--~~~v~~~~~~~da~~-l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~-----~Vtlv~~~ 176 (396)
T PRK09754 110 --AAARPLPLL---DAL--GERCFTLRHAGDAAR-LREVLQPERSVVIVGAGTIGLELAASATQRRC-----KVTVIELA 176 (396)
T ss_pred --CCCCCCCCC---CcC--CCCEEecCCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHHcCC-----eEEEEecC
Confidence 457666655 432 112333222221100 00122357999999999999999999998754 59999988
Q ss_pred CceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccc
Q 041145 245 LHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDY 324 (522)
Q Consensus 245 ~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 324 (522)
+..+ ++.. ....
T Consensus 177 ~~~l-~~~~--------------------------------------~~~~----------------------------- 188 (396)
T PRK09754 177 ATVM-GRNA--------------------------------------PPPV----------------------------- 188 (396)
T ss_pred Ccch-hhhc--------------------------------------CHHH-----------------------------
Confidence 7521 1100 0000
Q ss_pred ccccccccCcchhhhcccCcEEEEeCc-eeEEecCc---EEecCCceeeccEEEEeccCCCCccccccCCCcccccccCc
Q 041145 325 ASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG---IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADS 400 (522)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~---v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~ 400 (522)
.+.+.+.+++.+|+++.+. +.+++.++ +.++||+++++|.||+|+|.+++..+..- .++. .
T Consensus 189 --------~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~-----~gl~--~ 253 (396)
T PRK09754 189 --------QRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLARE-----ANLD--T 253 (396)
T ss_pred --------HHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHh-----cCCC--c
Confidence 0111233445678888776 77776432 56789999999999999999998533211 1121 1
Q ss_pred ccccccccccccCCCCceeEeeccccc----------chhhHHHHHHHHHHHHhcCCC
Q 041145 401 SGIMPLYRGTIHPLIPNMAFVGYIETV----------SNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 401 ~~~~~l~~~~~~~~~pni~~vG~~~~~----------~~~~~ae~qa~~~a~~l~g~~ 448 (522)
++.+.+..++. ++.||||++|++... ..++.|..||+.+|+.|.|..
T Consensus 254 ~~gi~vd~~~~-ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 254 ANGIVIDEACR-TCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred CCCEEECCCCc-cCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 23455555544 688999999976421 124789999999999998764
No 49
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.93 E-value=1.9e-24 Score=225.83 Aligned_cols=305 Identities=15% Similarity=0.085 Sum_probs=182.3
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCccc----CCCCCCCCCCCCCCChH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEF----SDYPWPERDDASFPSHV 84 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 84 (522)
+||+|||||++|+++|.+| .|.+|+|||+ +.+||+|.+. ++|+..+......+.. ..+.+... ....+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE--NVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC--CCcCCHH
Confidence 6999999999999999999 8999999999 7899998753 5665443322222211 11111110 1112333
Q ss_pred HHHHHHHHHHH-----------hcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEE
Q 041145 85 ELLDYLHGYAV-----------HFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWY 153 (522)
Q Consensus 85 ~~~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (522)
.+.++.+...+ +.++ .+.. .++..+ + ...+.|...++ ..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~-g~~~~~----~-------------------~~~~~v~~~~g--~~~~ 130 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKV--TVIK-GEAKFL----D-------------------PGTVLVTGENG--EETL 130 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC--EEEE-EEEEEc----c-------------------CCEEEEecCCC--cEEE
Confidence 44433333222 2222 1111 122211 1 22334443222 2368
Q ss_pred EECEEEEeeeccCCCCCCCCCCCCCCccccCCc-eeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCC
Q 041145 154 GFELLVMCIGKFGDIPRMPAFPANKGEEIFGGK-VLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQG 232 (522)
Q Consensus 154 ~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~ 232 (522)
.||+||+||| +.|+.|++| . + +.+. ++++.+... ....+++|+|||+|.+|+|+|..+++.+.
T Consensus 131 ~~d~lVlAtG---~~p~~~~~~-~-~---~~~~~~~~~~~~~~-------~~~~~~~vvViGgG~~g~e~A~~l~~~g~- 194 (461)
T TIGR01350 131 TAKNIIIATG---SRPRSLPGP-F-D---FDGEVVITSTGALN-------LKEVPESLVIIGGGVIGIEFASIFASLGS- 194 (461)
T ss_pred EeCEEEEcCC---CCCCCCCCC-C-C---CCCceEEcchHHhc-------cccCCCeEEEECCCHHHHHHHHHHHHcCC-
Confidence 9999999999 457776553 0 2 2222 333332221 11346899999999999999999998865
Q ss_pred CCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccC
Q 041145 233 PNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKF 312 (522)
Q Consensus 233 ~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (522)
+||++.|.+.. +|..+ ..
T Consensus 195 ----~Vtli~~~~~~-l~~~~---------------------------------------~~------------------ 212 (461)
T TIGR01350 195 ----KVTVIEMLDRI-LPGED---------------------------------------AE------------------ 212 (461)
T ss_pred ----cEEEEEcCCCC-CCCCC---------------------------------------HH------------------
Confidence 49999998752 22211 00
Q ss_pred CCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--CcE--EecCC--ceeeccEEEEeccCCCCccc
Q 041145 313 GLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GGI--EFEDK--SKLEADVVLLATGYDGKKKL 385 (522)
Q Consensus 313 ~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~v--~~~dG--~~~~~D~VI~ATG~~~~~~l 385 (522)
+...+.+.+++.+|+++.+. +.+++. +++ .+.+| +++++|.||+|||++++...
T Consensus 213 -------------------~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 213 -------------------VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred -------------------HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 00111233445678888776 666653 344 44567 46999999999999998531
Q ss_pred cccCCCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCCC
Q 041145 386 QSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~~ 448 (522)
. ......+..+..+.+.+...+ .++.||||++|...... ..+.|..|++.+|..+.++.
T Consensus 274 l---~~~~~gl~~~~~g~i~vd~~l-~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 274 L---GLENLGVELDERGRIVVDEYM-RTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred C---CcHhhCceECCCCcEeeCCCc-ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 0 011111222334545555544 35789999999876533 35789999999999998754
No 50
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.93 E-value=4.5e-25 Score=234.49 Aligned_cols=317 Identities=16% Similarity=0.172 Sum_probs=188.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccC-CCCCcccCCC-ccCcccccCCCCCcccC-------CCCC-----CC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEAT-NSIGGVWKHC-SFNSTKLQTPRCDFEFS-------DYPW-----PE 74 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~-~~~GG~w~~~-~~~~~~~~~~~~~~~~~-------~~~~-----~~ 74 (522)
.+||+|||+|++|+++|..+ .|.+|+|||+. ..+||+|.+. |.|+..+......+... .+.+ +.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 57999999999999999999 89999999974 4699998764 66655442222111100 0111 00
Q ss_pred ----------CC-CCCCCChHHHHHHHHHHHHhcC--CcC-----ceEeceEEEEEEEcCCCCcccccCCccccCCCCCC
Q 041145 75 ----------RD-DASFPSHVELLDYLHGYAVHFD--VLK-----YIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKG 136 (522)
Q Consensus 75 ----------~~-~~~~~~~~~~~~yl~~~~~~~~--l~~-----~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (522)
+. ...-.....+.++.+...++.. +.. .+...++.+.+.. .. +.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~--G~-------------a~f-- 258 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIY--ER-------------GHI-- 258 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEE--eE-------------EEE--
Confidence 00 0112356677777766655431 100 0111122233322 10 000
Q ss_pred CCCEEEEEEeCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCC
Q 041145 137 HPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYR 216 (522)
Q Consensus 137 ~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G 216 (522)
.+..+|++..++ +++.||+|||||| +.|..|+++ +.+. ..++++.+...+ ...+++|+|||+|
T Consensus 259 ~~~~~v~v~~~g--~~i~ad~lIIATG---S~P~~P~~~---~~~~--~~V~ts~d~~~l-------~~lpk~VvIVGgG 321 (659)
T PTZ00153 259 VDKNTIKSEKSG--KEFKVKNIIIATG---STPNIPDNI---EVDQ--KSVFTSDTAVKL-------EGLQNYMGIVGMG 321 (659)
T ss_pred ecCCeEEEccCC--EEEECCEEEEcCC---CCCCCCCCC---CCCC--CcEEehHHhhhh-------hhcCCceEEECCC
Confidence 011235443221 3689999999999 568888766 5432 235555443322 1246899999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHH
Q 041145 217 KSAIDLAVECAEANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAIS 296 (522)
Q Consensus 217 ~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (522)
.+|+|+|..++..+. +||++.+.+.. +|..+ ..+.
T Consensus 322 ~iGvE~A~~l~~~G~-----eVTLIe~~~~l-l~~~d---------------------------------------~eis 356 (659)
T PTZ00153 322 IIGLEFMDIYTALGS-----EVVSFEYSPQL-LPLLD---------------------------------------ADVA 356 (659)
T ss_pred HHHHHHHHHHHhCCC-----eEEEEeccCcc-cccCC---------------------------------------HHHH
Confidence 999999999998865 49999998762 22211 0011
Q ss_pred HHHHHHHhhcCCcccCCCCCCCccccccccccccccCcchhhh-cccCcEEEEeCc-eeEEecCc----EE--ecC----
Q 041145 297 KFIESYLVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSE-AEKGNILFKRAS-KWWFWSGG----IE--FED---- 364 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~v~~~~-i~~~~~~~----v~--~~d---- 364 (522)
+.+. +. +++.+|+++.+. +.+++.+. +. +.+
T Consensus 357 ~~l~-------------------------------------~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~ 399 (659)
T PTZ00153 357 KYFE-------------------------------------RVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTG 399 (659)
T ss_pred HHHH-------------------------------------HHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccc
Confidence 1111 11 234567777776 66665421 33 221
Q ss_pred ---C--------ceeeccEEEEeccCCCCccccccCCCcccccccCcccccccccccccC-----CCCceeEeecccccc
Q 041145 365 ---K--------SKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHP-----LIPNMAFVGYIETVS 428 (522)
Q Consensus 365 ---G--------~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~pni~~vG~~~~~~ 428 (522)
| +++++|.||+|||++|+... +......+.. .++.+.+..++... .+||||++|++.+..
T Consensus 400 ~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~---L~l~~~gi~~-~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~ 475 (659)
T PTZ00153 400 ESDGPKKNMNDIKETYVDSCLVATGRKPNTNN---LGLDKLKIQM-KRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ 475 (659)
T ss_pred cccccccccccceEEEcCEEEEEECcccCCcc---CCchhcCCcc-cCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc
Confidence 1 26899999999999999532 1111112222 23556666665543 279999999887643
Q ss_pred h-hhHHHHHHHHHHHHhcCC
Q 041145 429 N-LQIAEIRCKWLARLADQK 447 (522)
Q Consensus 429 ~-~~~ae~qa~~~a~~l~g~ 447 (522)
. .+.|..||+.+++.|.|.
T Consensus 476 ~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 476 MLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred cCHHHHHHHHHHHHHHHcCC
Confidence 3 588999999999999875
No 51
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.2e-24 Score=201.12 Aligned_cols=315 Identities=19% Similarity=0.202 Sum_probs=199.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCc----ccCCCCCCCCCCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDF----EFSDYPWPERDDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 83 (522)
.+|.+|||||.+|+++|+.. .|.++.++|..-.+||+|.+. +.|...+-..+.+- .-.++.|+......| ..
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f-dW 98 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF-DW 98 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC-cH
Confidence 67999999999999999999 899999999987899999752 33332221111111 112344544221222 33
Q ss_pred HHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEee
Q 041145 84 VELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCI 162 (522)
Q Consensus 84 ~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAt 162 (522)
..+.+--.+|..++ +++++..-+..|.-++-.+. +..++.-.|...++. ...+++.+++|||
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~----------------f~~~~~v~V~~~d~~-~~~Ytak~iLIAt 161 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRAR----------------FVSPGEVEVEVNDGT-KIVYTAKHILIAT 161 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEE----------------EcCCCceEEEecCCe-eEEEecceEEEEe
Confidence 34444334444333 34333333444544443111 111333334443332 3458999999999
Q ss_pred eccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEe
Q 041145 163 GKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVI 242 (522)
Q Consensus 163 G~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~ 242 (522)
| ..|.+|+|| |.+. -+.|..+.+++ ..+||++|||+|.+|+|+|..++..+.+ +++++
T Consensus 162 G---g~p~~PnIp---G~E~----gidSDgff~Le-------e~Pkr~vvvGaGYIavE~Agi~~gLgse-----thlfi 219 (478)
T KOG0405|consen 162 G---GRPIIPNIP---GAEL----GIDSDGFFDLE-------EQPKRVVVVGAGYIAVEFAGIFAGLGSE-----THLFI 219 (478)
T ss_pred C---CccCCCCCC---chhh----ccccccccchh-------hcCceEEEEccceEEEEhhhHHhhcCCe-----eEEEE
Confidence 9 669999999 8763 25666666643 3579999999999999999999999876 99999
Q ss_pred ecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccc
Q 041145 243 RTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEE 322 (522)
Q Consensus 243 R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~ 322 (522)
|....+ . .+...++
T Consensus 220 R~~kvL-R---------------------------------------~FD~~i~-------------------------- 233 (478)
T KOG0405|consen 220 RQEKVL-R---------------------------------------GFDEMIS-------------------------- 233 (478)
T ss_pred ecchhh-c---------------------------------------chhHHHH--------------------------
Confidence 987411 1 1112222
Q ss_pred ccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc---EEecCCceeeccEEEEeccCCCCccccccCCCccccc
Q 041145 323 DYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG---IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSL 396 (522)
Q Consensus 323 ~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~---v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~ 396 (522)
+..-+.+...+|.+++.+ +.++.+ ++ +..+.|+...+|.++||||.+|+..- +..+-.++
T Consensus 234 -----------~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~---L~le~vGV 299 (478)
T KOG0405|consen 234 -----------DLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG---LNLENVGV 299 (478)
T ss_pred -----------HHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc---ccchhcce
Confidence 222344556668888776 555543 22 45556766669999999999998421 11222233
Q ss_pred ccCcccccccccccccCCCCceeEeecccccchh-hHHHHHHHHHHHHhcC
Q 041145 397 LADSSGIMPLYRGTIHPLIPNMAFVGYIETVSNL-QIAEIRCKWLARLADQ 446 (522)
Q Consensus 397 ~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~~-~~ae~qa~~~a~~l~g 446 (522)
..++++.+.+.. ...++.|+||.+|...+-..+ |+|-+.+|-++..+-|
T Consensus 300 k~~~~g~IivDe-Yq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 300 KTDKNGAIIVDE-YQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred eeCCCCCEEEec-cccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 334566555433 356889999999988775554 8898999999988766
No 52
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.93 E-value=1.2e-24 Score=220.58 Aligned_cols=289 Identities=15% Similarity=0.142 Sum_probs=182.5
Q ss_pred cEEEECCCHHHHHHHHHh-----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHH
Q 041145 13 KIGIIGAGISGIATAKQL-----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELL 87 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (522)
+|||||||+||+.+|++| .+.+|+|||+++.. .|.... +... ......+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~-------~~~~~~---------------~~~~-~g~~~~~~~~ 57 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT-------PYSGML---------------PGMI-AGHYSLDEIR 57 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC-------cccchh---------------hHHH-heeCCHHHhc
Confidence 489999999999999998 25799999997642 121110 0000 1112334555
Q ss_pred HHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCC
Q 041145 88 DYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGD 167 (522)
Q Consensus 88 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~ 167 (522)
..+..+++++++ .+. ..+|++++. +. -.|.+.+++ ++.||+|||||| +
T Consensus 58 ~~~~~~~~~~gv--~~~-~~~v~~id~--~~---------------------~~V~~~~g~---~~~yD~LviAtG---~ 105 (364)
T TIGR03169 58 IDLRRLARQAGA--RFV-IAEATGIDP--DR---------------------RKVLLANRP---PLSYDVLSLDVG---S 105 (364)
T ss_pred ccHHHHHHhcCC--EEE-EEEEEEEec--cc---------------------CEEEECCCC---cccccEEEEccC---C
Confidence 556666777776 343 458888876 31 157776654 699999999999 5
Q ss_pred CCCCCCCCCCCCccccCCceeeccccCCCch---hh--hhh-ccCCCeEEEECCCCCHHHHHHHHHHhcCC-CCCCcEEE
Q 041145 168 IPRMPAFPANKGEEIFGGKVLHSMDYSKLDK---EA--ATE-LLEGKKVAIIGYRKSAIDLAVECAEANQG-PNGQPCTM 240 (522)
Q Consensus 168 ~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~---~~--~~~-~~~~k~V~VIG~G~sg~dia~~l~~~~~~-~~~~~Vt~ 240 (522)
.|..|.+| |..+. ++......+... .. ... ...+|+|+|||+|.+|+|+|.+|++...+ ....+|++
T Consensus 106 ~~~~~~i~---g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~l 179 (364)
T TIGR03169 106 TTPLSGVE---GAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL 179 (364)
T ss_pred CCCCCCCC---ccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 58888888 75432 111111100000 00 000 12468999999999999999999864211 00136998
Q ss_pred EeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcc
Q 041145 241 VIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPF 320 (522)
Q Consensus 241 v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 320 (522)
+ +.+. +++... .
T Consensus 180 i-~~~~-~l~~~~---------------------------------------~--------------------------- 191 (364)
T TIGR03169 180 I-AGAS-LLPGFP---------------------------------------A--------------------------- 191 (364)
T ss_pred E-eCCc-ccccCC---------------------------------------H---------------------------
Confidence 8 4332 222110 0
Q ss_pred ccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCcEEecCCceeeccEEEEeccCCCCccccccCCCcccccccC
Q 041145 321 EEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGGIEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLAD 399 (522)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~ 399 (522)
.+.+.+.+.+++.+|+++.+. +.++++++|++++|+++++|.||+|+|.+++..+.. .++..+
T Consensus 192 ----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~------~gl~~~ 255 (364)
T TIGR03169 192 ----------KVRRLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAE------SGLPLD 255 (364)
T ss_pred ----------HHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHH------cCCCcC
Confidence 001112234557788988886 788888889999999999999999999998742211 112223
Q ss_pred cccccccccccccCCCCceeEeeccccc------chhhHHHHHHHHHHHHhcC
Q 041145 400 SSGIMPLYRGTIHPLIPNMAFVGYIETV------SNLQIAEIRCKWLARLADQ 446 (522)
Q Consensus 400 ~~~~~~l~~~~~~~~~pni~~vG~~~~~------~~~~~ae~qa~~~a~~l~g 446 (522)
+.+.+.+...+..+++||||++|+.... .....|..||+.+|+.|..
T Consensus 256 ~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 256 EDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 4566666666665689999999977532 1245688999998888753
No 53
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.93 E-value=1.8e-24 Score=237.44 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=185.0
Q ss_pred EEEECCCHHHHHHHHHh-----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 14 IGIIGAGISGIATAKQL-----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 14 vvIIGaG~aGl~~a~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
|||||||+||+.+|.+| .+++|+|||+.+.++ |..+.+ +. +. ......+++..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~----~l---------~g~~~~~~l~~ 58 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS----VL---------QGEADLDDITL 58 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH----HH---------CCCCCHHHccC
Confidence 68999999999999988 357999999987652 221111 00 00 00112233322
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
....+.++.++ .++++++|+.++. + .+.|++.++. ++.||+||+||| +.
T Consensus 59 ~~~~~~~~~gv--~~~~g~~V~~Id~--~---------------------~k~V~~~~g~---~~~yD~LVlATG---s~ 107 (785)
T TIGR02374 59 NSKDWYEKHGI--TLYTGETVIQIDT--D---------------------QKQVITDAGR---TLSYDKLILATG---SY 107 (785)
T ss_pred CCHHHHHHCCC--EEEcCCeEEEEEC--C---------------------CCEEEECCCc---EeeCCEEEECCC---CC
Confidence 23344556677 6888999999976 2 2357776654 799999999999 56
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
|+.|++| |.+.. + +++.....+... .......+|+|+|||+|.+|+|+|..|++.+. +|+++.+.+.++
T Consensus 108 p~~p~ip---G~~~~-~-v~~~rt~~d~~~-i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~-----~Vtvv~~~~~ll 176 (785)
T TIGR02374 108 PFILPIP---GADKK-G-VYVFRTIEDLDA-IMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGM-----DVSVIHHAPGLM 176 (785)
T ss_pred cCCCCCC---CCCCC-C-EEEeCCHHHHHH-HHHHhhcCCeEEEECCCHHHHHHHHHHHhcCC-----eEEEEccCCchh
Confidence 8999999 87542 2 222222211110 00112367999999999999999999999865 499999887532
Q ss_pred ecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccccc
Q 041145 249 LPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQ 328 (522)
Q Consensus 249 ~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 328 (522)
++.. ......
T Consensus 177 -~~~l--------------------------------------d~~~~~------------------------------- 186 (785)
T TIGR02374 177 -AKQL--------------------------------------DQTAGR------------------------------- 186 (785)
T ss_pred -hhhc--------------------------------------CHHHHH-------------------------------
Confidence 1100 000111
Q ss_pred ccccCcchhhhcccCcEEEEeCc-eeEEecC----cEEecCCceeeccEEEEeccCCCCccccccCCCcccccccCcccc
Q 041145 329 MAILPENFFSEAEKGNILFKRAS-KWWFWSG----GIEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSSGI 403 (522)
Q Consensus 329 ~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~----~v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~ 403 (522)
.+.+.+++.+|+++.+. +.++.++ +|+++||+++++|.||+|+|++|+..+..- .++.. ++.
T Consensus 187 ------~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~-----~gl~~--~gg 253 (785)
T TIGR02374 187 ------LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVS-----AGIKV--NRG 253 (785)
T ss_pred ------HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHh-----cCCcc--CCC
Confidence 11133446678888776 6666543 378899999999999999999999543211 11111 244
Q ss_pred cccccccccCCCCceeEeecccccc-----hhhHHHHHHHHHHHHhcCCC
Q 041145 404 MPLYRGTIHPLIPNMAFVGYIETVS-----NLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 404 ~~l~~~~~~~~~pni~~vG~~~~~~-----~~~~ae~qa~~~a~~l~g~~ 448 (522)
+.+...+ .++.||||++|...... .+..+..||+.+|..|.|..
T Consensus 254 I~Vd~~~-~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 254 IIVNDSM-QTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred EEECCCc-ccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 5555444 46899999999765321 23557899999999999865
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.92 E-value=6e-24 Score=231.14 Aligned_cols=296 Identities=21% Similarity=0.262 Sum_probs=174.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+||||||||++||..| .|++|+|||+.+.+||.+.. ..|. +....++..
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~-~IP~------------------------~Rlp~evL~ 593 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN-IIPQ------------------------FRIPAELIQ 593 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee-eccc------------------------ccccHHHHH
Confidence 56999999999999999999 89999999999999998754 2221 111233444
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+..+.+..+++ .+++++.| .+.. + +. ....||+||||||.. .
T Consensus 594 ~die~l~~~GV--e~~~gt~V-di~l--e----------------------------~L---~~~gYDaVILATGA~--~ 635 (1019)
T PRK09853 594 HDIEFVKAHGV--KFEFGCSP-DLTV--E----------------------------QL---KNEGYDYVVVAIGAD--K 635 (1019)
T ss_pred HHHHHHHHcCC--EEEeCcee-EEEh--h----------------------------hh---eeccCCEEEECcCCC--C
Confidence 44455566676 67777766 2221 1 11 135599999999965 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
|..+++| |.+. .++++.++.............||+|+|||+|++|+|+|..+.+.+. .++||++.|++.-.
T Consensus 636 ~~~l~Ip---G~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgG---akeVTLVyRr~~~~ 706 (1019)
T PRK09853 636 NGGLKLE---GGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPG---VEKVTVVYRRTKQE 706 (1019)
T ss_pred CCCCCCC---CccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCC---CceEEEEEccCccc
Confidence 5556677 6542 2334333221000000122468999999999999999998887643 14699999987433
Q ss_pred ecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccccc
Q 041145 249 LPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQ 328 (522)
Q Consensus 249 ~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 328 (522)
+|.. .+.+....+ .++.-...
T Consensus 707 MPA~---------------------------------------~eEle~Ale-----------eGVe~~~~--------- 727 (1019)
T PRK09853 707 MPAW---------------------------------------REEYEEALE-----------DGVEFKEL--------- 727 (1019)
T ss_pred cccc---------------------------------------HHHHHHHHH-----------cCCEEEeC---------
Confidence 3321 011111110 01100000
Q ss_pred ccccCcchhhhcc-cCcEEEEeCceeEEecCc----EEecCCceeeccEEEEeccCCCCccccccCCCcccccccCcccc
Q 041145 329 MAILPENFFSEAE-KGNILFKRASKWWFWSGG----IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSSGI 403 (522)
Q Consensus 329 ~~~~~~~~~~~l~-~~~v~v~~~~i~~~~~~~----v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~ 403 (522)
... ..+. .+++.+..-.+...++++ +...++.++++|.||+|+|.+++..+.. . .++..+..+.
T Consensus 728 --~~p----~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle---~--~GL~ld~~G~ 796 (1019)
T PRK09853 728 --LNP----ESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLK---A--NGIPLDKKGW 796 (1019)
T ss_pred --Cce----EEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHH---h--cCccccCCCC
Confidence 000 0011 233332211111111122 2233456799999999999999854321 1 1121223344
Q ss_pred cccccccccCCCCceeEeecccc-cchhhHHHHHHHHHHHHhcCCCC
Q 041145 404 MPLYRGTIHPLIPNMAFVGYIET-VSNLQIAEIRCKWLARLADQKFK 449 (522)
Q Consensus 404 ~~l~~~~~~~~~pni~~vG~~~~-~~~~~~ae~qa~~~a~~l~g~~~ 449 (522)
+.+.. .+.++.||||++|+... +.+...|..||+.+|+.|.+...
T Consensus 797 I~VDe-tlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 797 PVVDA-NGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred EEeCC-CcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 44433 34568899999998764 44567899999999999987654
No 55
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.92 E-value=4.9e-24 Score=204.73 Aligned_cols=304 Identities=17% Similarity=0.199 Sum_probs=189.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
+++|||+|+|++|+++++.| ..++|+|++++..+-=+| ..|++. -.-.....+.+
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTP---LLpS~~--------------------vGTve~rSIvE 111 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTP---LLPSTT--------------------VGTVELRSIVE 111 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEee---ccCCcc--------------------ccceeehhhhh
Confidence 67999999999999999999 788999999875432111 111111 11223445566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEe--CC--e-eEEEEECEEEEeee
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVET--NQ--A-IQWYGFELLVMCIG 163 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~--~-~~~~~~d~vViAtG 163 (522)
-++..+++-.- ..-.+..+.+.++. + .+ .|.++. .+ + +..+.||+||+|+|
T Consensus 112 PIr~i~r~k~~-~~~y~eAec~~iDp--~-------------------~k--~V~~~s~t~~~~~~e~~i~YDyLViA~G 167 (491)
T KOG2495|consen 112 PIRAIARKKNG-EVKYLEAECTKIDP--D-------------------NK--KVHCRSLTADSSDKEFVIGYDYLVIAVG 167 (491)
T ss_pred hHHHHhhccCC-CceEEecccEeecc--c-------------------cc--EEEEeeeccCCCcceeeecccEEEEecc
Confidence 66666654332 12334556666655 2 12 343332 21 2 45799999999999
Q ss_pred ccCCCCCCCCCCCCCCccc---cCCceeeccccCC-----Cc-----hhhhhhccCCCeEEEECCCCCHHHHHHHHHHhc
Q 041145 164 KFGDIPRMPAFPANKGEEI---FGGKVLHSMDYSK-----LD-----KEAATELLEGKKVAIIGYRKSAIDLAVECAEAN 230 (522)
Q Consensus 164 ~~s~~p~~p~~p~~~G~~~---f~g~~~hs~~~~~-----~~-----~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~ 230 (522)
+ .|+++.+| |..+ |.-.+-|+...+. ++ ....++..+--+++|||||+||+|+|.||++.-
T Consensus 168 A---~~~TFgip---GV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi 241 (491)
T KOG2495|consen 168 A---EPNTFGIP---GVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFI 241 (491)
T ss_pred C---CCCCCCCC---chhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHH
Confidence 5 57888888 8765 3333333333211 00 000123334458999999999999999998753
Q ss_pred CC------C---CCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHH
Q 041145 231 QG------P---NGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIES 301 (522)
Q Consensus 231 ~~------~---~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (522)
.+ | +--+||++...|+ ++..+...+..+.+
T Consensus 242 ~~Dl~k~yp~l~~~i~vtLiEA~d~----------------------------------------iL~mFdkrl~~yae- 280 (491)
T KOG2495|consen 242 PEDLRKIYPELKKDIKVTLIEAADH----------------------------------------ILNMFDKRLVEYAE- 280 (491)
T ss_pred HHHHHHhhhcchhheEEEeeccchh----------------------------------------HHHHHHHHHHHHHH-
Confidence 22 0 1123444443332 01111111222222
Q ss_pred HHhhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCcEEecCC----ceeeccEEEEe
Q 041145 302 YLVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGGIEFEDK----SKLEADVVLLA 376 (522)
Q Consensus 302 ~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~v~~~dG----~~~~~D~VI~A 376 (522)
+.+.+.+|+++.+. +..+++..|+.+++ +++++-.+|||
T Consensus 281 ------------------------------------~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 281 ------------------------------------NQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWA 324 (491)
T ss_pred ------------------------------------HHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEec
Confidence 44567889999997 78899988887655 56999999999
Q ss_pred ccCCCCccccccCCCcccccccCcccccccccccccCCCCceeEeecccc----cchhhHHHHHHHHHHHHhcCCC
Q 041145 377 TGYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIET----VSNLQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 377 TG~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~----~~~~~~ae~qa~~~a~~l~g~~ 448 (522)
||..+.....++. ..+.....+++.+...+.+++.+|||++|++.. ..+.++|++|+.|+|+++....
T Consensus 325 tG~~~rp~~k~lm----~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~ 396 (491)
T KOG2495|consen 325 TGNGPRPVIKDLM----KQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMG 396 (491)
T ss_pred CCCCCchhhhhHh----hcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHh
Confidence 9999884222111 112111233567788889999999999998762 2356899999999999997443
No 56
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.92 E-value=3.9e-24 Score=222.56 Aligned_cols=279 Identities=24% Similarity=0.331 Sum_probs=175.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. .. +.+....++..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-gi------------------------p~~~~~~~~~~ 194 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-GI------------------------PEFRLPKDIVD 194 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-cC------------------------CCccCCHHHHH
Confidence 46999999999999999999 89999999999999887643 11 11222345666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+....++++++ .+++++.+.. .+++.+. ...||+||+|||.. .
T Consensus 195 ~~~~~l~~~gv--~~~~~~~v~~-----------------------------~v~~~~~----~~~~d~vvlAtGa~--~ 237 (457)
T PRK11749 195 REVERLLKLGV--EIRTNTEVGR-----------------------------DITLDEL----RAGYDAVFIGTGAG--L 237 (457)
T ss_pred HHHHHHHHcCC--EEEeCCEECC-----------------------------ccCHHHH----HhhCCEEEEccCCC--C
Confidence 66666777776 5666665411 0222111 36799999999964 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhh--hhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEA--ATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~--~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
|+.+++| |.+. . .++++.++....... ......+++|+|||+|.+|+|+|..+++.+. ++||++.|++.
T Consensus 238 ~~~~~i~---G~~~-~-gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~----~~Vtlv~~~~~ 308 (457)
T PRK11749 238 PRFLGIP---GENL-G-GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA----ESVTIVYRRGR 308 (457)
T ss_pred CCCCCCC---CccC-C-CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC----CeEEEeeecCc
Confidence 6777788 7642 2 244444332210000 0112368999999999999999999998764 26999998765
Q ss_pred eeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccc
Q 041145 247 WTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYAS 326 (522)
Q Consensus 247 ~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 326 (522)
..+|... ..
T Consensus 309 ~~~~~~~---------------------------------------~~-------------------------------- 317 (457)
T PRK11749 309 EEMPASE---------------------------------------EE-------------------------------- 317 (457)
T ss_pred ccCCCCH---------------------------------------HH--------------------------------
Confidence 3332210 00
Q ss_pred ccccccCcchhhhcccCcEEEEeCc-eeEEecCc-----EEec-------------------CCceeeccEEEEeccCCC
Q 041145 327 CQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG-----IEFE-------------------DKSKLEADVVLLATGYDG 381 (522)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~-----v~~~-------------------dG~~~~~D~VI~ATG~~~ 381 (522)
.+.+++.+|+++.+. +.++.+++ |.+. +++++++|.||+|+|+++
T Consensus 318 ----------~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 318 ----------VEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred ----------HHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCC
Confidence 011223344444443 33433221 3321 234689999999999999
Q ss_pred CccccccCCCcccccccCcccccccccccccCCCCceeEeeccccc-chhhHHHHHHHHHHHHhc
Q 041145 382 KKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETV-SNLQIAEIRCKWLARLAD 445 (522)
Q Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~-~~~~~ae~qa~~~a~~l~ 445 (522)
+..+.. ...++..+..+.+.+....+.++.|+||++|+.... .....|..|++.+|..+.
T Consensus 388 ~~~l~~----~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 388 NPLILS----TTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred Cchhhc----cccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 843321 111222234455555554556789999999987654 345778999999888774
No 57
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.91 E-value=1e-23 Score=218.22 Aligned_cols=164 Identities=26% Similarity=0.355 Sum_probs=108.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. .+| .+....++..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-gip------------------------~~~~~~~~~~ 187 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY-GIP------------------------EFRLPKEIVV 187 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee-cCC------------------------CccCCHHHHH
Confidence 57999999999999999999 89999999999989987643 111 1111234444
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
......++.++ .++.++.| .. .|++.+. ...||+||+|||.. .
T Consensus 188 ~~~~~l~~~gv--~~~~~~~v---~~--------------------------~v~~~~~----~~~yd~viiAtGa~--~ 230 (449)
T TIGR01316 188 TEIKTLKKLGV--TFRMNFLV---GK--------------------------TATLEEL----FSQYDAVFIGTGAG--L 230 (449)
T ss_pred HHHHHHHhCCc--EEEeCCcc---CC--------------------------cCCHHHH----HhhCCEEEEeCCCC--C
Confidence 44444555565 45555433 11 1232222 24699999999953 5
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchh--------hhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKE--------AATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTM 240 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~--------~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~ 240 (522)
|+.|++| |.+. .| ++++.++...... .......+|+|+|||+|.+|+|+|..+++.+. +||+
T Consensus 231 p~~~~ip---G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~-----~Vtl 300 (449)
T TIGR01316 231 PKLMNIP---GEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGA-----EVHC 300 (449)
T ss_pred CCcCCCC---CCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCC-----EEEE
Confidence 8888888 8652 22 4444333210000 00113468999999999999999999999865 4999
Q ss_pred EeecCc
Q 041145 241 VIRTLH 246 (522)
Q Consensus 241 v~R~~~ 246 (522)
+.|++.
T Consensus 301 v~~~~~ 306 (449)
T TIGR01316 301 LYRRTR 306 (449)
T ss_pred EeecCc
Confidence 998864
No 58
>PRK12831 putative oxidoreductase; Provisional
Probab=99.91 E-value=1.3e-23 Score=217.81 Aligned_cols=167 Identities=25% Similarity=0.376 Sum_probs=112.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++||++|..| .|++|+|||+.+.+||.+.. ..| .+. .+.+++..
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip--------------~~~---------l~~~~~~~ 195 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY-GIP--------------EFR---------LPKETVVK 195 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee-cCC--------------Ccc---------CCccHHHH
Confidence 46999999999999999999 89999999999989998743 111 111 11233556
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+....++++++ .+++++.|.. .+++++.. ..+.||+||||||.. .
T Consensus 196 ~~~~~~~~~gv--~i~~~~~v~~-----------------------------~v~~~~~~--~~~~~d~viiAtGa~--~ 240 (464)
T PRK12831 196 KEIENIKKLGV--KIETNVVVGK-----------------------------TVTIDELL--EEEGFDAVFIGSGAG--L 240 (464)
T ss_pred HHHHHHHHcCC--EEEcCCEECC-----------------------------cCCHHHHH--hccCCCEEEEeCCCC--C
Confidence 66666777787 6777765421 02221110 135699999999953 4
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCch-------hhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDK-------EAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMV 241 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~-------~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v 241 (522)
|+.|++| |.+. .| ++++.++..... ........+|+|+|||+|.+|+|+|..+.+.+.+ ||++
T Consensus 241 ~~~l~ip---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~-----Vtlv 310 (464)
T PRK12831 241 PKFMGIP---GENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE-----VHIV 310 (464)
T ss_pred CCCCCCC---CcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE-----EEEE
Confidence 7888888 8653 12 344333321000 0001235789999999999999999999998754 9999
Q ss_pred eecCc
Q 041145 242 IRTLH 246 (522)
Q Consensus 242 ~R~~~ 246 (522)
.|+..
T Consensus 311 ~r~~~ 315 (464)
T PRK12831 311 YRRSE 315 (464)
T ss_pred eecCc
Confidence 98763
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.91 E-value=5.7e-23 Score=227.21 Aligned_cols=302 Identities=19% Similarity=0.199 Sum_probs=177.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||||||+||..| .|++|+|||+.+.+||.... .. +.|.-..++.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y-GI------------------------P~~rlp~~vi~ 360 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY-GI------------------------PEFRLPNQLID 360 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc-cC------------------------CCCcChHHHHH
Confidence 57999999999999999999 89999999999999998753 11 22333345555
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
...+.++..|+ .++.++.|-. .+++++.. ...||+||+|||.. .
T Consensus 361 ~~i~~l~~~Gv--~f~~n~~vG~-----------------------------dit~~~l~---~~~yDAV~LAtGA~--~ 404 (944)
T PRK12779 361 DVVEKIKLLGG--RFVKNFVVGK-----------------------------TATLEDLK---AAGFWKIFVGTGAG--L 404 (944)
T ss_pred HHHHHHHhhcC--eEEEeEEecc-----------------------------EEeHHHhc---cccCCEEEEeCCCC--C
Confidence 55556666776 5555554311 24443321 35699999999964 5
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchh---------hhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKE---------AATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCT 239 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~---------~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt 239 (522)
|+.+++| |.+. .| ++++.+|...... .......||+|+|||||.+|+|+|..+.+.+. +||
T Consensus 405 pr~l~Ip---G~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga-----~Vt 474 (944)
T PRK12779 405 PTFMNVP---GEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGG-----NVT 474 (944)
T ss_pred CCcCCCC---CCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCC-----EEE
Confidence 8888899 8542 22 3333333211000 00012478999999999999999999998865 499
Q ss_pred EEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCc
Q 041145 240 MVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHP 319 (522)
Q Consensus 240 ~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~ 319 (522)
++.|++.-.+|.. ...+....+ +++.-.+
T Consensus 475 lv~rr~~~~mpa~---------------------------------------~~e~~~a~e-----------eGV~~~~- 503 (944)
T PRK12779 475 IVYRRTKSEMPAR---------------------------------------VEELHHALE-----------EGINLAV- 503 (944)
T ss_pred EEEecCccccccc---------------------------------------HHHHHHHHH-----------CCCEEEe-
Confidence 9998863111210 000000000 0110000
Q ss_pred cccccccccccccCcchhhhccc---CcEEEEeCceeEE---ecCc--EEecCCc--eeeccEEEEeccCCCCccccccC
Q 041145 320 FEEDYASCQMAILPENFFSEAEK---GNILFKRASKWWF---WSGG--IEFEDKS--KLEADVVLLATGYDGKKKLQSIL 389 (522)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~---~~v~v~~~~i~~~---~~~~--v~~~dG~--~~~~D~VI~ATG~~~~~~l~~~~ 389 (522)
.. -... .+.. +.|+-..-..... +++| ....+|+ ++++|.||+|+|+.++..+.
T Consensus 504 ------~~----~p~~---i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~--- 567 (944)
T PRK12779 504 ------LR----APRE---FIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK--- 567 (944)
T ss_pred ------Cc----ceEE---EEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh---
Confidence 00 0000 0001 1121100000000 1111 1112443 48999999999999884221
Q ss_pred CCcccccccCcccccccccccccCCCCceeEeecccccc-hhhHHHHHHHHHHHHhcCCCCCC
Q 041145 390 PKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVS-NLQIAEIRCKWLARLADQKFKLP 451 (522)
Q Consensus 390 ~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~-~~~~ae~qa~~~a~~l~g~~~lp 451 (522)
....++..+..+.+.+....+.++.|+||++|+...+. ....|..+++.+|..+...+.+.
T Consensus 568 -~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 568 -DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred -hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11112222344555565555667899999999877654 45678899999999998766554
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.90 E-value=2.6e-22 Score=219.58 Aligned_cols=298 Identities=22% Similarity=0.227 Sum_probs=168.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||||||+||..| .|++|+|||+.+.+||.... ..|..+ .+ .++..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~-~IP~~r-----------------------lp-~e~l~ 591 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN-IIPEFR-----------------------IS-AESIQ 591 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee-cccccC-----------------------CC-HHHHH
Confidence 46999999999999999999 89999999999999988654 222111 11 23333
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+....+..+++ .+++++. . + +++.+. ....||+||||||.. .
T Consensus 592 ~~ie~l~~~GV--e~~~g~~-----~--d------------------------~~ve~l---~~~gYDaVIIATGA~--~ 633 (1012)
T TIGR03315 592 KDIELVKFHGV--EFKYGCS-----P--D------------------------LTVAEL---KNQGYKYVILAIGAW--K 633 (1012)
T ss_pred HHHHHHHhcCc--EEEEecc-----c--c------------------------eEhhhh---hcccccEEEECCCCC--C
Confidence 33344445555 4444421 0 0 111111 135699999999965 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
+..+.+| |... .++.+.++.............+|+|+|||+|.+|+|+|..+.+... .++|+++.|+..-.
T Consensus 634 ~~~l~I~---G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~G---a~kVtLVyRr~~~~ 704 (1012)
T TIGR03315 634 HGPLRLE---GGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPG---VEKVTVVYRRTKRY 704 (1012)
T ss_pred CCCCCcC---CCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCC---CceEEEEEccCccc
Confidence 4555667 6432 2333322221000000112468999999999999999998887621 13699999876422
Q ss_pred ecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccccccc
Q 041145 249 LPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQ 328 (522)
Q Consensus 249 ~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~ 328 (522)
+|... ..+....+ .++.-...
T Consensus 705 Mpa~~---------------------------------------eEl~~ale-----------eGVe~~~~--------- 725 (1012)
T TIGR03315 705 MPASR---------------------------------------EELEEALE-----------DGVDFKEL--------- 725 (1012)
T ss_pred cccCH---------------------------------------HHHHHHHH-----------cCCEEEeC---------
Confidence 22210 01111100 01100000
Q ss_pred ccccCcchhhhcccCcEEEEeCceeEEecCc--EEecCCc--eeeccEEEEeccCCCCccccccCCCcccccccCccccc
Q 041145 329 MAILPENFFSEAEKGNILFKRASKWWFWSGG--IEFEDKS--KLEADVVLLATGYDGKKKLQSILPKPFSSLLADSSGIM 404 (522)
Q Consensus 329 ~~~~~~~~~~~l~~~~v~v~~~~i~~~~~~~--v~~~dG~--~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~~ 404 (522)
.. ...+..+++.+..-.+...+.++ ....+|+ ++++|.||+|+|++++..+.. . .++..+..+.+
T Consensus 726 ---~~---p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle---~--~GL~ld~~G~I 794 (1012)
T TIGR03315 726 ---LS---PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQ---K--NGIPLDEYGWP 794 (1012)
T ss_pred ---Cc---eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHH---h--cCcccCCCCCE
Confidence 00 00111233332211111111111 1223454 589999999999999854321 1 11222334555
Q ss_pred ccccccccCCCCceeEeeccc-ccchhhHHHHHHHHHHHHhcCCCCC
Q 041145 405 PLYRGTIHPLIPNMAFVGYIE-TVSNLQIAEIRCKWLARLADQKFKL 450 (522)
Q Consensus 405 ~l~~~~~~~~~pni~~vG~~~-~~~~~~~ae~qa~~~a~~l~g~~~l 450 (522)
.+......++.|+||++|+.. ++.....|..||+.+|..|.++...
T Consensus 795 ~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 795 VVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred EeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccC
Confidence 555544567899999999876 4555678999999999999866433
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.89 E-value=2.6e-22 Score=220.56 Aligned_cols=166 Identities=28% Similarity=0.394 Sum_probs=110.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+|||+||..| .|++|+|||+.+.+||.+.. ..| .+....++..
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gip------------------------~~rlp~~~~~ 485 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY-GIP------------------------EFRLPKKIVD 485 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-cCC------------------------CCCCCHHHHH
Confidence 46999999999999999999 89999999999889988643 111 1111123444
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
...+..+++++ .++.++.|. . .|++++. ....||+||||||.. .
T Consensus 486 ~~~~~l~~~gv--~~~~~~~v~---~--------------------------~v~~~~l---~~~~ydavvlAtGa~--~ 529 (752)
T PRK12778 486 VEIENLKKLGV--KFETDVIVG---K--------------------------TITIEEL---EEEGFKGIFIASGAG--L 529 (752)
T ss_pred HHHHHHHHCCC--EEECCCEEC---C--------------------------cCCHHHH---hhcCCCEEEEeCCCC--C
Confidence 44445566666 566665431 1 1222222 145699999999953 4
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchh-------hhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKE-------AATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMV 241 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~-------~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v 241 (522)
|+.|++| |.+. ..++++.++...... .......||+|+|||+|.+|+|+|..+.+.+. ++||++
T Consensus 530 ~~~l~ip---G~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga----~~Vtlv 600 (752)
T PRK12778 530 PNFMNIP---GENS--NGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGA----ERVTIV 600 (752)
T ss_pred CCCCCCC---CCCC--CCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCC----CeEEEe
Confidence 7888888 8653 224444433221000 00112468999999999999999999988764 259999
Q ss_pred eecCc
Q 041145 242 IRTLH 246 (522)
Q Consensus 242 ~R~~~ 246 (522)
.|++.
T Consensus 601 ~r~~~ 605 (752)
T PRK12778 601 YRRSE 605 (752)
T ss_pred eecCc
Confidence 98764
No 62
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=2.1e-21 Score=186.48 Aligned_cols=199 Identities=21% Similarity=0.304 Sum_probs=140.3
Q ss_pred cccCCcEEEECCCHHHHHHHHHh---CCCCcEEEccCCCCCcccCCC-ccCcccccCC-----------CCCcccCCCC-
Q 041145 8 VQYSSKIGIIGAGISGIATAKQL---RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTP-----------RCDFEFSDYP- 71 (522)
Q Consensus 8 ~m~~~~vvIIGaG~aGl~~a~~l---~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~-----------~~~~~~~~~~- 71 (522)
||+..|++.||.||+-|+.|..| .++++..+||.+.+ .|+.. ..|+..+++| ...|+|-.+-
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 34567999999999999999999 46889999999876 57654 4566666554 3333333211
Q ss_pred -------CCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEE--E
Q 041145 72 -------WPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWE--V 142 (522)
Q Consensus 72 -------~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v 142 (522)
+-... ..++++.|..+|+++.+.++. .++|+++|++|..... +.... +
T Consensus 80 ~h~RLy~Fl~~e-~f~i~R~Ey~dY~~Waa~~l~---~~rfg~~V~~i~~~~~-------------------d~~~~~~~ 136 (436)
T COG3486 80 EHGRLYEFLNYE-TFHIPRREYNDYCQWAASQLP---SLRFGEEVTDISSLDG-------------------DAVVRLFV 136 (436)
T ss_pred HcchHhhhhhhh-cccccHHHHHHHHHHHHhhCC---ccccCCeeccccccCC-------------------cceeEEEE
Confidence 11111 567899999999999999873 7999999997743221 22223 2
Q ss_pred EEEeCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccC-CceeeccccCCCchhhhhhccCCCe-EEEECCCCCHH
Q 041145 143 AVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFG-GKVLHSMDYSKLDKEAATELLEGKK-VAIIGYRKSAI 220 (522)
Q Consensus 143 ~~~~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~-g~~~hs~~~~~~~~~~~~~~~~~k~-V~VIG~G~sg~ 220 (522)
.+.++ ..+.|+.|||++| ..|++|+.- ..+. ++++||.+|.... .....|+ |+|||+|.||.
T Consensus 137 ~t~~~---~~y~ar~lVlg~G---~~P~IP~~f-----~~l~~~~vfHss~~~~~~-----~~~~~~~~V~ViG~GQSAA 200 (436)
T COG3486 137 VTANG---TVYRARNLVLGVG---TQPYIPPCF-----RSLIGERVFHSSEYLERH-----PELLQKRSVTVIGSGQSAA 200 (436)
T ss_pred EcCCC---cEEEeeeEEEccC---CCcCCChHH-----hCcCccceeehHHHHHhh-----HHhhcCceEEEEcCCccHH
Confidence 22233 2799999999999 569998621 2233 4899999998532 2244455 99999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 221 DLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 221 dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
|+...|...... ...++.|+.|++.+.
T Consensus 201 Ei~~~Ll~~~~~-~~~~l~witR~~gf~ 227 (436)
T COG3486 201 EIFLDLLNSQPP-QDYQLNWITRSSGFL 227 (436)
T ss_pred HHHHHHHhCCCC-cCccceeeeccCCCC
Confidence 999999875432 134589999998743
No 63
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.89 E-value=2.3e-22 Score=190.03 Aligned_cols=318 Identities=18% Similarity=0.151 Sum_probs=197.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCcccccCCCCCcccCCC-CCCCC---CCCCCCCh
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNSTKLQTPRCDFEFSDY-PWPER---DDASFPSH 83 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 83 (522)
.+||+|||+||+|..||.+. .|++.+++|++..+||+|.+. +.|+..+...+.+|..... .+... ..+.-...
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 57999999999999999999 999999999999999999874 7787777666665554322 11110 00112334
Q ss_pred HHHHHHHHHHHHhcC--CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEEEECEEEE
Q 041145 84 VELLDYLHGYAVHFD--VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWYGFELLVM 160 (522)
Q Consensus 84 ~~~~~yl~~~~~~~~--l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~d~vVi 160 (522)
+.+++.....++... +. +..-.-+|+.+.-.+. + .+..+|++...++ .+.+.++++||
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~-~lfkknkV~~~kG~gs----------------f--~~p~~V~v~k~dg~~~ii~aKnIii 179 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIE-NLFKKNKVTYVKGFGS----------------F--LDPNKVSVKKIDGEDQIIKAKNIII 179 (506)
T ss_pred HHHHHHHHHHHHHHhhHHH-HHhhhcCeEEEeeeEe----------------e--cCCceEEEeccCCCceEEeeeeEEE
Confidence 444444444444331 11 1111223444332111 0 1222465544333 56899999999
Q ss_pred eeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 041145 161 CIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTM 240 (522)
Q Consensus 161 AtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~ 240 (522)
|||+ -.+++| |++--..+++.|..-.++ ..-+|+++|||+|.+|.|+..-..+.+.+ ||+
T Consensus 180 ATGS-----eV~~~P---GI~IDekkIVSStgALsL-------~~vPk~~~viG~G~IGLE~gsV~~rLGse-----VT~ 239 (506)
T KOG1335|consen 180 ATGS-----EVTPFP---GITIDEKKIVSSTGALSL-------KEVPKKLTVIGAGYIGLEMGSVWSRLGSE-----VTV 239 (506)
T ss_pred EeCC-----ccCCCC---CeEecCceEEecCCccch-------hhCcceEEEEcCceeeeehhhHHHhcCCe-----EEE
Confidence 9993 244567 765433456666555543 24579999999999999999999999876 999
Q ss_pred EeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcc
Q 041145 241 VIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPF 320 (522)
Q Consensus 241 v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~ 320 (522)
+.-.++..-+ +...+++.
T Consensus 240 VEf~~~i~~~----------------------------------------mD~Eisk~---------------------- 257 (506)
T KOG1335|consen 240 VEFLDQIGGV----------------------------------------MDGEISKA---------------------- 257 (506)
T ss_pred EEehhhhccc----------------------------------------cCHHHHHH----------------------
Confidence 9755542111 11122222
Q ss_pred ccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCc-----EEec---CC--ceeeccEEEEeccCCCCccccccC
Q 041145 321 EEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG-----IEFE---DK--SKLEADVVLLATGYDGKKKLQSIL 389 (522)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~-----v~~~---dG--~~~~~D~VI~ATG~~~~~~l~~~~ 389 (522)
+...|+..+++++.++ +...+.++ |.+. +| +++++|+++.|+|.+|-.. -+
T Consensus 258 ---------------~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~---GL 319 (506)
T KOG1335|consen 258 ---------------FQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE---GL 319 (506)
T ss_pred ---------------HHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc---CC
Confidence 2233445566666665 44444322 3332 33 3489999999999998631 11
Q ss_pred CCcccccccCcccccccccccccCCCCceeEeecccccch-hhHHHHHHHHHHHHhcCCC
Q 041145 390 PKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVSN-LQIAEIRCKWLARLADQKF 448 (522)
Q Consensus 390 ~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~-~~~ae~qa~~~a~~l~g~~ 448 (522)
..+-.++..+..+.+++... +.+.+||||.+|++..... .+-||.|+..+...+.|..
T Consensus 320 gle~iGi~~D~r~rv~v~~~-f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 320 GLEKIGIELDKRGRVIVNTR-FQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred Chhhcccccccccceecccc-ccccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 11222333344555554433 5578999999998876555 4789999999999998773
No 64
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.89 E-value=1.1e-21 Score=197.52 Aligned_cols=179 Identities=21% Similarity=0.287 Sum_probs=109.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++|+++|..| .|++|++||+.+.+||.+.. .++ ....+.+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~-----------------------~~~~~~~~~~~ 73 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIP-----------------------EFRIPIERVRE 73 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCc-----------------------ccccCHHHHHH
Confidence 45999999999999999999 89999999999988887643 110 01112344555
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.++.+.++ ++ .++.++.|..+....... ...+.......+ ...+.||+||+|||+. .
T Consensus 74 ~~~~l~~~-~i--~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~d~lviAtGs~--~ 130 (352)
T PRK12770 74 GVKELEEA-GV--VFHTRTKVCCGEPLHEEE-----------------GDEFVERIVSLE-ELVKKYDAVLIATGTW--K 130 (352)
T ss_pred HHHHHHhC-Ce--EEecCcEEeecccccccc-----------------ccccccccCCHH-HHHhhCCEEEEEeCCC--C
Confidence 55555544 65 567777775543210000 111221111111 1136899999999952 4
Q ss_pred CCCCCCCCCCCccccCCceeecccc---------CCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDY---------SKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCT 239 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~---------~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt 239 (522)
|+.|++| |.+. . .++++.++ ..... ......++++|+|||+|.+|+|+|..++..+. ++||
T Consensus 131 ~~~~~ip---g~~~-~-~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~----~~Vt 200 (352)
T PRK12770 131 SRKLGIP---GEDL-P-GVYSALEYLFRIRAAKLGYLPW-EKVPPVEGKKVVVVGAGLTAVDAALEAVLLGA----EKVY 200 (352)
T ss_pred CCcCCCC---Cccc-c-CceeHHHHHHHhhhcccccccc-ccccccCCCEEEEECCCHHHHHHHHHHHHcCC----CeEE
Confidence 7788888 7652 1 12222111 00000 00112458999999999999999999987653 2499
Q ss_pred EEeecCc
Q 041145 240 MVIRTLH 246 (522)
Q Consensus 240 ~v~R~~~ 246 (522)
++.|++.
T Consensus 201 vi~~~~~ 207 (352)
T PRK12770 201 LAYRRTI 207 (352)
T ss_pred EEeecch
Confidence 9988764
No 65
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.89 E-value=6.4e-22 Score=213.25 Aligned_cols=164 Identities=26% Similarity=0.396 Sum_probs=108.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. .+| .+....++..
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~-gip------------------------~~~~~~~~~~ 247 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY-GIP------------------------RFRLPESVID 247 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee-cCC------------------------CCCCCHHHHH
Confidence 46999999999999999999 89999999999999998754 111 1112234444
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+....+.++++ .+++++.+. . + +++.+. ...||+||+|||.. .
T Consensus 248 ~~~~~l~~~Gv--~i~~~~~v~-~----d------------------------v~~~~~----~~~~DaVilAtGa~--~ 290 (652)
T PRK12814 248 ADIAPLRAMGA--EFRFNTVFG-R----D------------------------ITLEEL----QKEFDAVLLAVGAQ--K 290 (652)
T ss_pred HHHHHHHHcCC--EEEeCCccc-C----c------------------------cCHHHH----HhhcCEEEEEcCCC--C
Confidence 44455566666 566665431 1 0 111111 23499999999954 2
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+..+++| |.+. .| +++..++..... .......+|+|+|||+|.+|+|+|..+.+.+. ++||++.|++.
T Consensus 291 ~~~~~ip---G~~~-~g-v~~~~~~l~~~~-~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga----~~Vtlv~r~~~ 358 (652)
T PRK12814 291 ASKMGIP---GEEL-PG-VISGIDFLRNVA-LGTALHPGKKVVVIGGGNTAIDAARTALRLGA----ESVTILYRRTR 358 (652)
T ss_pred CCCCCCC---CcCc-CC-cEeHHHHHHHhh-cCCcccCCCeEEEECCCHHHHHHHHHHHHcCC----CeEEEeeecCc
Confidence 4566788 7542 22 333322211000 00123578999999999999999999988764 36999998874
No 66
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.88 E-value=2e-21 Score=216.85 Aligned_cols=167 Identities=25% Similarity=0.328 Sum_probs=110.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||||||++|..| .|++|+|||+.+.+||.... .. +.+....++..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~-gi------------------------p~~rl~~e~~~ 484 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY-GI------------------------PSFRLPRDIID 484 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec-cC------------------------CccCCCHHHHH
Confidence 46899999999999999999 89999999999988886532 11 22222345555
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
...+..+++++ .+++++.+ .. + +++.+.. ....||+||||||.. .
T Consensus 485 ~~~~~l~~~Gv--~~~~~~~v-g~----~------------------------~~~~~l~--~~~~yDaViIATGa~--~ 529 (1006)
T PRK12775 485 REVQRLVDIGV--KIETNKVI-GK----T------------------------FTVPQLM--NDKGFDAVFLGVGAG--A 529 (1006)
T ss_pred HHHHHHHHCCC--EEEeCCcc-CC----c------------------------cCHHHHh--hccCCCEEEEecCCC--C
Confidence 55556667776 56666433 11 1 1111110 024589999999964 4
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchh--------hhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKE--------AATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTM 240 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~--------~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~ 240 (522)
|+.|++| |.+. +.+++..+|...... .......||+|+|||+|.+|+|+|..+.+.+. +.|++
T Consensus 530 pr~l~Ip---G~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa----~~Vti 600 (1006)
T PRK12775 530 PTFLGIP---GEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGA----PTVRC 600 (1006)
T ss_pred CCCCCCC---CcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCC----CEEEE
Confidence 7888899 8542 235555443221000 00112478999999999999999998888764 35899
Q ss_pred EeecCc
Q 041145 241 VIRTLH 246 (522)
Q Consensus 241 v~R~~~ 246 (522)
+.|+..
T Consensus 601 v~rr~~ 606 (1006)
T PRK12775 601 VYRRSE 606 (1006)
T ss_pred EeecCc
Confidence 988754
No 67
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.87 E-value=6.4e-21 Score=198.84 Aligned_cols=162 Identities=22% Similarity=0.348 Sum_probs=103.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. .. +.+....++..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-gi------------------------p~~~~~~~~~~ 197 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY-GI------------------------PDFKLEKEVID 197 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee-cC------------------------CcccCCHHHHH
Confidence 46999999999999999999 89999999999999987653 11 11222234445
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.....+.++++ .+.+++.|.. + ++.... ...||+||+|||.. .
T Consensus 198 ~~~~~~~~~gv--~~~~~~~v~~-~----------------------------~~~~~~----~~~~d~vvlAtGa~--~ 240 (471)
T PRK12810 198 RRIELMEAEGI--EFRTNVEVGK-D----------------------------ITAEEL----LAEYDAVFLGTGAY--K 240 (471)
T ss_pred HHHHHHHhCCc--EEEeCCEECC-c----------------------------CCHHHH----HhhCCEEEEecCCC--C
Confidence 54455666776 5666665421 1 000000 24699999999954 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCC------ch-hhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKL------DK-EAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMV 241 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~------~~-~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v 241 (522)
|+.+.+| |.+. .| +++..+|... .. ........+|+|+|||+|.+|+|+|..+...+. ++||++
T Consensus 241 ~~~l~ip---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga----~~Vt~~ 311 (471)
T PRK12810 241 PRDLGIP---GRDL-DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGA----KSVTQR 311 (471)
T ss_pred CCcCCCC---CccC-CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC----CeEEEc
Confidence 6677788 7542 22 3332222100 00 000123568999999999999999998888764 358854
Q ss_pred ee
Q 041145 242 IR 243 (522)
Q Consensus 242 ~R 243 (522)
.+
T Consensus 312 ~~ 313 (471)
T PRK12810 312 DI 313 (471)
T ss_pred cc
Confidence 43
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.87 E-value=8.1e-21 Score=205.64 Aligned_cols=166 Identities=20% Similarity=0.321 Sum_probs=107.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+|||++|..| .|++|+|||+.+.+||.+.. .+|. +....++..
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~-gip~------------------------~~l~~~~~~ 381 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF-GIPA------------------------FKLDKSLLA 381 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee-cCCC------------------------ccCCHHHHH
Confidence 56999999999999999999 89999999999999998754 2221 111234445
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.....++++++ .+++++.|.. + +++.+. ...||+|++|||.. .
T Consensus 382 ~~~~~~~~~Gv--~~~~~~~v~~-----~------------------------i~~~~~----~~~~DavilAtGa~--~ 424 (654)
T PRK12769 382 RRREIFSAMGI--EFELNCEVGK-----D------------------------ISLESL----LEDYDAVFVGVGTY--R 424 (654)
T ss_pred HHHHHHHHCCe--EEECCCEeCC-----c------------------------CCHHHH----HhcCCEEEEeCCCC--C
Confidence 54555667776 5666765521 1 111111 24699999999975 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccC--------CCchh--hhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYS--------KLDKE--AATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPC 238 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~--------~~~~~--~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~V 238 (522)
+..+.+| |.+. .| +++..+|. ..... .......+|+|+|||+|.+|+|+|..+.+.+. ++|
T Consensus 425 ~~~l~i~---g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga----~~V 495 (654)
T PRK12769 425 SMKAGLP---NEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGA----SNV 495 (654)
T ss_pred CCCCCCC---CCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC----CeE
Confidence 4455677 6542 22 22211110 00000 00112578999999999999999998888764 369
Q ss_pred EEEeecCce
Q 041145 239 TMVIRTLHW 247 (522)
Q Consensus 239 t~v~R~~~~ 247 (522)
|++.|++..
T Consensus 496 t~i~~~~~~ 504 (654)
T PRK12769 496 TCAYRRDEA 504 (654)
T ss_pred EEeEecCCC
Confidence 999988653
No 69
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.87 E-value=8.8e-21 Score=196.22 Aligned_cols=237 Identities=18% Similarity=0.194 Sum_probs=153.7
Q ss_pred HHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEE--ECEEEEeeeccCCC
Q 041145 91 HGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYG--FELLVMCIGKFGDI 168 (522)
Q Consensus 91 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~d~vViAtG~~s~~ 168 (522)
+.+.+++++ .++++++|+.++. + . +.|.+.+..+..++. ||+|||||| +.
T Consensus 51 ~~~~~~~gv--~~~~~~~V~~id~--~-------------------~--~~v~~~~~~~~~~~~~~yd~lIiATG---~~ 102 (427)
T TIGR03385 51 EVFIKKRGI--DVKTNHEVIEVND--E-------------------R--QTVVVRNNKTNETYEESYDYLILSPG---AS 102 (427)
T ss_pred HHHHHhcCC--eEEecCEEEEEEC--C-------------------C--CEEEEEECCCCCEEecCCCEEEECCC---CC
Confidence 445577777 6778999999976 2 1 245555432112466 999999999 55
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhh-hhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCce
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEA-ATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHW 247 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~-~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~ 247 (522)
|+.|++| |.+. ..+++.....+..... ......+|+|+|||+|.+|+|+|..|++.+. +||++.|.+..
T Consensus 103 p~~~~i~---G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~-----~Vtli~~~~~~ 172 (427)
T TIGR03385 103 PIVPNIE---GINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGK-----NVTLIHRSERI 172 (427)
T ss_pred CCCCCCC---CcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCC-----cEEEEECCccc
Confidence 8888888 8652 1233332221110000 0012467999999999999999999998754 49999988753
Q ss_pred eecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCccccccccc
Q 041145 248 TLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASC 327 (522)
Q Consensus 248 ~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 327 (522)
..+..+ ..+
T Consensus 173 ~~~~~~---------------------------------------~~~-------------------------------- 181 (427)
T TIGR03385 173 LNKLFD---------------------------------------EEM-------------------------------- 181 (427)
T ss_pred CccccC---------------------------------------HHH--------------------------------
Confidence 222110 000
Q ss_pred cccccCcchhhhcccCcEEEEeCc-eeEEecCc--EEecCCceeeccEEEEeccCCCCccccccCCCcccccccCccccc
Q 041145 328 QMAILPENFFSEAEKGNILFKRAS-KWWFWSGG--IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSSGIM 404 (522)
Q Consensus 328 ~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~--v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~~ 404 (522)
.+.+.+.+++.+|+++.+. +.++++++ +++.+|+++++|.||+|||++++..+..- .++..+.++.+
T Consensus 182 -----~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~-----~gl~~~~~G~i 251 (427)
T TIGR03385 182 -----NQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKD-----SGLKLGETGAI 251 (427)
T ss_pred -----HHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHh-----cCcccCCCCCE
Confidence 0111233446678888766 77777654 37788999999999999999998533211 11222344556
Q ss_pred ccccccccCCCCceeEeeccccc-----------chhhHHHHHHHHHHHHhcCC
Q 041145 405 PLYRGTIHPLIPNMAFVGYIETV-----------SNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 405 ~l~~~~~~~~~pni~~vG~~~~~-----------~~~~~ae~qa~~~a~~l~g~ 447 (522)
.+...+ .++.||||++|+.... ...+.|..||+++|+.|.|.
T Consensus 252 ~vd~~~-~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 252 WVNEKF-QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred EECCCc-EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 666554 3689999999976531 23578999999999999875
No 70
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.86 E-value=1.5e-20 Score=195.44 Aligned_cols=169 Identities=22% Similarity=0.374 Sum_probs=111.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.+.. .+| .+....++..
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~-gip------------------------~~~~~~~~~~ 195 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF-GIP------------------------SFKLDKAVLS 195 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee-cCc------------------------cccCCHHHHH
Confidence 46899999999999999999 89999999999999987653 221 1122345666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+....++++|+ .++++++|... +.+.+. ...||.||+|||.. .
T Consensus 196 ~~~~~~~~~Gv--~~~~~~~v~~~-----------------------------~~~~~~----~~~~D~vilAtGa~--~ 238 (467)
T TIGR01318 196 RRREIFTAMGI--EFHLNCEVGRD-----------------------------ISLDDL----LEDYDAVFLGVGTY--R 238 (467)
T ss_pred HHHHHHHHCCC--EEECCCEeCCc-----------------------------cCHHHH----HhcCCEEEEEeCCC--C
Confidence 66667778887 67777765210 111111 24699999999965 2
Q ss_pred CCCCCCCCCCCccccCCceeeccccCC--------Cch--hhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSK--------LDK--EAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPC 238 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~--------~~~--~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~V 238 (522)
+..+++| |.+. .| +++..+|.. ... ........+|+|+|||+|.+|+|.|..+.+.+. ++|
T Consensus 239 ~~~~~i~---g~~~-~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga----~~V 309 (467)
T TIGR01318 239 SMRGGLP---GEDA-PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGA----ASV 309 (467)
T ss_pred CCcCCCC---CcCC-CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCC----CeE
Confidence 3345677 7543 22 333221110 000 000112468999999999999999999888763 359
Q ss_pred EEEeecCceeec
Q 041145 239 TMVIRTLHWTLP 250 (522)
Q Consensus 239 t~v~R~~~~~~p 250 (522)
|++.|++...+|
T Consensus 310 tvv~r~~~~~~~ 321 (467)
T TIGR01318 310 TCAYRRDEANMP 321 (467)
T ss_pred EEEEecCcccCC
Confidence 999998754333
No 71
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.9e-19 Score=167.64 Aligned_cols=319 Identities=18% Similarity=0.215 Sum_probs=181.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEcc---CC-----CCCcccCCCccCcccccCCCCCcccC-----------C
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEA---TN-----SIGGVWKHCSFNSTKLQTPRCDFEFS-----------D 69 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~---~~-----~~GG~w~~~~~~~~~~~~~~~~~~~~-----------~ 69 (522)
.+|++|||||.+||+||+++ .|.+|.++|- .+ .+||+|.+- .| +|+.+|.-. .
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNV-----GC-IPKKLMHQAallG~al~da~k 92 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNV-----GC-IPKKLMHQAALLGEALHDARK 92 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeec-----cc-ccHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999 8999999983 22 134444431 11 244444321 2
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEece-EEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC
Q 041145 70 YPWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNS-KVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ 148 (522)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (522)
+.|.-.....-+....+.+-.++-.+..+.--++.++. +|..+...+ .|. +..++...+..
T Consensus 93 yGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Nsyg---------------eFv---~~h~I~at~~~ 154 (503)
T KOG4716|consen 93 YGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYG---------------EFV---DPHKIKATNKK 154 (503)
T ss_pred hCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecce---------------eec---ccceEEEecCC
Confidence 44443321233455555555555555444322344433 344443321 111 22344444433
Q ss_pred e-eEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHH
Q 041145 149 A-IQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECA 227 (522)
Q Consensus 149 ~-~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~ 227 (522)
+ .+.++++.+||||| .+|+.|+|| |..++. +.|.+.-++ .+.+.+-+|||+|..|.|+|..|+
T Consensus 155 gk~~~~ta~~fvIatG---~RPrYp~Ip---G~~Ey~---ITSDDlFsl-------~~~PGkTLvVGa~YVaLECAgFL~ 218 (503)
T KOG4716|consen 155 GKERFLTAENFVIATG---LRPRYPDIP---GAKEYG---ITSDDLFSL-------PYEPGKTLVVGAGYVALECAGFLK 218 (503)
T ss_pred CceEEeecceEEEEec---CCCCCCCCC---Cceeee---ecccccccc-------cCCCCceEEEccceeeeehhhhHh
Confidence 3 56899999999999 679999999 876653 566666553 245567889999999999999999
Q ss_pred HhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcC
Q 041145 228 EANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKL 307 (522)
Q Consensus 228 ~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (522)
..+-+ ||+..|+-. +. .+.+.+..++.++|...-
T Consensus 219 gfg~~-----vtVmVRSI~--Lr---------------------------------------GFDqdmae~v~~~m~~~G 252 (503)
T KOG4716|consen 219 GFGYD-----VTVMVRSIL--LR---------------------------------------GFDQDMAELVAEHMEERG 252 (503)
T ss_pred hcCCC-----cEEEEEEee--cc---------------------------------------cccHHHHHHHHHHHHHhC
Confidence 99765 999999842 11 112223333333332211
Q ss_pred CcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCceeEEecCcEEecCCceeeccEEEEeccCCCCccccc
Q 041145 308 PLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRASKWWFWSGGIEFEDKSKLEADVVLLATGYDGKKKLQS 387 (522)
Q Consensus 308 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~i~~~~~~~v~~~dG~~~~~D~VI~ATG~~~~~~l~~ 387 (522)
-.......|. -.+++..|...+.-.. +. ...+-+.++|.|+||.|.++...
T Consensus 253 ikf~~~~vp~------------------~Veq~~~g~l~v~~k~----t~----t~~~~~~~ydTVl~AiGR~~~~~--- 303 (503)
T KOG4716|consen 253 IKFLRKTVPE------------------RVEQIDDGKLRVFYKN----TN----TGEEGEEEYDTVLWAIGRKALTD--- 303 (503)
T ss_pred Cceeecccce------------------eeeeccCCcEEEEeec----cc----ccccccchhhhhhhhhccccchh---
Confidence 1111111111 1122333333322110 00 01112356999999999998731
Q ss_pred cCCCcccccccC-cccccccccccccCCCCceeEeecccc--cchhhHHHHHHHHHHHHhc
Q 041145 388 ILPKPFSSLLAD-SSGIMPLYRGTIHPLIPNMAFVGYIET--VSNLQIAEIRCKWLARLAD 445 (522)
Q Consensus 388 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~pni~~vG~~~~--~~~~~~ae~qa~~~a~~l~ 445 (522)
-+..+..+...+ ..+.+++.. ...+++|++|++|..-- +..-|+|-+.+|.+|+.+-
T Consensus 304 ~l~L~~~GVk~n~ks~KI~v~~-~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf 363 (503)
T KOG4716|consen 304 DLNLDNAGVKTNEKSGKIPVDD-EEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLF 363 (503)
T ss_pred hcCCCccceeecccCCccccCh-HHhcCCCceEEecceecCCcccchhhhhhchHHHHHHh
Confidence 111121222222 244454443 34578999999996543 3345889999999998664
No 72
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.84 E-value=4.2e-20 Score=181.24 Aligned_cols=265 Identities=17% Similarity=0.254 Sum_probs=175.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC--CcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY--DPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVEL 86 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (522)
.+.++|||+|++|..|+..+ .+. +++++-+...+ .|...++ +.+... ..+.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-------pydr~~L---------s~~~~~--------~~~~~ 129 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-------PYDRARL---------SKFLLT--------VGEGL 129 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-------cccchhc---------ccceee--------ccccc
Confidence 56899999999999999999 343 66666554322 2222111 111000 01111
Q ss_pred HHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 87 LDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 87 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
......+.+.+++ ...+++.|+.++. ... +|.+.+++ ++.|++|+||||
T Consensus 130 a~r~~e~Yke~gI--e~~~~t~v~~~D~--~~K---------------------~l~~~~Ge---~~kys~LilATG--- 178 (478)
T KOG1336|consen 130 AKRTPEFYKEKGI--ELILGTSVVKADL--ASK---------------------TLVLGNGE---TLKYSKLIIATG--- 178 (478)
T ss_pred cccChhhHhhcCc--eEEEcceeEEeec--ccc---------------------EEEeCCCc---eeecceEEEeec---
Confidence 1111224455666 6888999999987 322 57777775 899999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccCCCchhh--hhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 167 DIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEA--ATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 167 ~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~--~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
+.|+.|++| |.+. + ..+.+++.++.. ......+++|+|+|+|..|+|+|.++..... +||++.+.
T Consensus 179 s~~~~l~~p---G~~~---~--nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~-----~VT~V~~e 245 (478)
T KOG1336|consen 179 SSAKTLDIP---GVEL---K--NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAK-----SVTVVFPE 245 (478)
T ss_pred CccccCCCC---Cccc---c--ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCc-----eEEEEccC
Confidence 458999999 8762 1 222333322211 1223347899999999999999999988754 59999988
Q ss_pred CceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCcccccc
Q 041145 245 LHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDY 324 (522)
Q Consensus 245 ~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~ 324 (522)
+. ++|+.. .
T Consensus 246 ~~-~~~~lf--------------------------------------~-------------------------------- 254 (478)
T KOG1336|consen 246 PW-LLPRLF--------------------------------------G-------------------------------- 254 (478)
T ss_pred cc-chhhhh--------------------------------------h--------------------------------
Confidence 74 333210 0
Q ss_pred ccccccccCcchhhhcccCcEEEEeCc-eeEEecCc------EEecCCceeeccEEEEeccCCCCccccccCCCcccccc
Q 041145 325 ASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG------IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLL 397 (522)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~------v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~ 397 (522)
+.+.+.+.+.+++.+|+++.++ +.+++.+. |.+.||+++++|.||+++|-+++.++ +.. +..
T Consensus 255 -----~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~---~~~---g~~ 323 (478)
T KOG1336|consen 255 -----PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF---LEK---GIL 323 (478)
T ss_pred -----HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc---ccc---cce
Confidence 1112233345668889998887 66776543 88899999999999999999999533 211 233
Q ss_pred cCcccccccccccccCCCCceeEeecccc
Q 041145 398 ADSSGIMPLYRGTIHPLIPNMAFVGYIET 426 (522)
Q Consensus 398 ~~~~~~~~l~~~~~~~~~pni~~vG~~~~ 426 (522)
.+..|.++++..+. +++||+|++|.+..
T Consensus 324 ~~~~G~i~V~~~f~-t~~~~VyAiGDva~ 351 (478)
T KOG1336|consen 324 LDSKGGIKVDEFFQ-TSVPNVYAIGDVAT 351 (478)
T ss_pred ecccCCEeehhcee-eccCCcccccceee
Confidence 35678888887655 57999999996654
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.84 E-value=2.7e-19 Score=201.13 Aligned_cols=282 Identities=15% Similarity=0.104 Sum_probs=170.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.+||+|||||||||+||..+ .|++|+|||+.+.+||.+.... .. ..-.+..++..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~~--------------------~~g~~~~~~~~ 219 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---ET--------------------IDGKPAADWAA 219 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---cc--------------------cCCccHHHHHH
Confidence 46999999999999999999 8999999999999999775411 00 00012223322
Q ss_pred HHHHHHHhcC-CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEE-EE-------e---CCeeEEEEEC
Q 041145 89 YLHGYAVHFD-VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVA-VE-------T---NQAIQWYGFE 156 (522)
Q Consensus 89 yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------~---~~~~~~~~~d 156 (522)
-+..-++.++ + .+..+++|..+.. +.. ...+. .. . .+....+.||
T Consensus 220 ~~~~~l~~~~~v--~v~~~t~V~~i~~--~~~-------------------v~~v~~~~~~~~~~~~~~~~~~~~~i~a~ 276 (985)
T TIGR01372 220 ATVAELTAMPEV--TLLPRTTAFGYYD--HNT-------------------VGALERVTDHLDAPPKGVPRERLWRIRAK 276 (985)
T ss_pred HHHHHHhcCCCc--EEEcCCEEEEEec--CCe-------------------EEEEEEeeeccccccCCccccceEEEEcC
Confidence 2222233232 4 5677888877643 100 00010 00 0 0112368899
Q ss_pred EEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCC
Q 041145 157 LLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQ 236 (522)
Q Consensus 157 ~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~ 236 (522)
.||||||. .|+.|++| |.+. .| ++.......... ......+++|+|||+|.+|+|+|..|++.+.+
T Consensus 277 ~VILATGa---~~r~~pip---G~~~-pg-V~~~~~~~~~l~--~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~---- 342 (985)
T TIGR01372 277 RVVLATGA---HERPLVFA---NNDR-PG-VMLAGAARTYLN--RYGVAPGKRIVVATNNDSAYRAAADLLAAGIA---- 342 (985)
T ss_pred EEEEcCCC---CCcCCCCC---CCCC-CC-cEEchHHHHHHH--hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCc----
Confidence 99999994 57888888 7543 22 222211111000 01224689999999999999999999988632
Q ss_pred cEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCC
Q 041145 237 PCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKP 316 (522)
Q Consensus 237 ~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 316 (522)
.|+++.+.+..
T Consensus 343 vV~vv~~~~~~--------------------------------------------------------------------- 353 (985)
T TIGR01372 343 VVAIIDARADV--------------------------------------------------------------------- 353 (985)
T ss_pred eEEEEccCcch---------------------------------------------------------------------
Confidence 47777655420
Q ss_pred CCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecC----cEEec----CCceeeccEEEEeccCCCCccccc
Q 041145 317 DHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSG----GIEFE----DKSKLEADVVLLATGYDGKKKLQS 387 (522)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~----~v~~~----dG~~~~~D~VI~ATG~~~~~~l~~ 387 (522)
...+.+.+++.+|+++.+. +.++.++ +|++. +++++++|.|++++|+.|+..+..
T Consensus 354 ----------------~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~ 417 (985)
T TIGR01372 354 ----------------SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFS 417 (985)
T ss_pred ----------------hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHH
Confidence 0001123445567777776 5666543 35554 456699999999999999964432
Q ss_pred cCCCcccccccCcccccccccccccCCCCceeEeecccccchhhHHHHHHHHHHHHh
Q 041145 388 ILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIETVSNLQIAEIRCKWLARLA 444 (522)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~~~~~~~~ae~qa~~~a~~l 444 (522)
.+.. .+..+. ....+ ...++.|++|++|...+...+..|..+++.++..+
T Consensus 418 ~lg~---~~~~~~--~~~~~--~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 418 QRGG---KLAWDA--AIAAF--LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAA 467 (985)
T ss_pred hcCC---Ceeecc--ccCce--ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHH
Confidence 1111 111011 11111 11356899999998887666777888888887665
No 74
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.83 E-value=1.4e-19 Score=193.11 Aligned_cols=163 Identities=24% Similarity=0.398 Sum_probs=103.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++||++|..| .|++|+|||+.+.+||.+.. .. +.|.-..++..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~-gi------------------------p~~~~~~~~~~ 191 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY-GI------------------------PAYRLPREVLD 191 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee-cC------------------------CCccCCHHHHH
Confidence 46899999999999999999 89999999999999998753 11 11111223334
Q ss_pred HHHHHHHhcCCcCceEeceEE-EEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKV-VEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGD 167 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~ 167 (522)
.....+.++++ .+.+++.+ .++.. + .. ...||+||+|||..
T Consensus 192 ~~l~~~~~~Gv--~~~~~~~~~~~~~~--~----------------------------~~----~~~~D~Vi~AtG~~-- 233 (564)
T PRK12771 192 AEIQRILDLGV--EVRLGVRVGEDITL--E----------------------------QL----EGEFDAVFVAIGAQ-- 233 (564)
T ss_pred HHHHHHHHCCC--EEEeCCEECCcCCH--H----------------------------HH----HhhCCEEEEeeCCC--
Confidence 43445566776 56666554 22111 0 00 13489999999965
Q ss_pred CCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 168 IPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 168 ~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+..+.++ |.+. .| +++...+....... .....+|+|+|||+|.+|+|.+..+.+.+. ++|+++.|.+.
T Consensus 234 ~~~~~~i~---g~~~-~g-v~~~~~~l~~~~~~-~~~~~gk~v~ViGgg~~a~d~a~~a~~lga----~~v~ii~r~~~ 302 (564)
T PRK12771 234 LGKRLPIP---GEDA-AG-VLDAVDFLRAVGEG-EPPFLGKRVVVIGGGNTAMDAARTARRLGA----EEVTIVYRRTR 302 (564)
T ss_pred CCCcCCCC---CCcc-CC-cEEHHHHHHHhhcc-CCcCCCCCEEEECChHHHHHHHHHHHHcCC----CEEEEEEecCc
Confidence 23344566 6432 22 22322221100000 123568999999999999999998888763 36999988764
No 75
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.83 E-value=2.7e-19 Score=183.40 Aligned_cols=291 Identities=18% Similarity=0.182 Sum_probs=186.3
Q ss_pred CCcEEEECCCHHHHHHHHHh-----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHH
Q 041145 11 SSKIGIIGAGISGIATAKQL-----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVE 85 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
+.+++|||.|.+|..+..++ .-++++||-..+.+ .|....+..-- +.-.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~-------nY~Ri~Ls~vl---------------~~~~~~ed 60 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP-------NYNRILLSSVL---------------AGEKTAED 60 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc-------cccceeecccc---------------CCCccHHH
Confidence 56899999999999999988 35689999887665 44444331100 11122344
Q ss_pred HHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeecc
Q 041145 86 LLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 86 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
+.---.++.+++++ +++.+.+|+.++. +. -.|+.+.+. ++.||.||+|||
T Consensus 61 i~l~~~dwy~~~~i--~L~~~~~v~~idr--~~---------------------k~V~t~~g~---~~~YDkLilATG-- 110 (793)
T COG1251 61 ISLNRNDWYEENGI--TLYTGEKVIQIDR--AN---------------------KVVTTDAGR---TVSYDKLIIATG-- 110 (793)
T ss_pred HhccchhhHHHcCc--EEEcCCeeEEecc--Cc---------------------ceEEccCCc---EeecceeEEecC--
Confidence 44444667788888 7889999999987 32 257766664 899999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 166 GDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 166 s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
|.|.+|++| |.+.+. ++--..+.+.+..... ....++-+|||+|.-|.|.|..|.+.+-+ |+|+.-.+
T Consensus 111 -S~pfi~PiP---G~~~~~--v~~~R~i~D~~am~~~-ar~~~~avVIGGGLLGlEaA~~L~~~Gm~-----~~Vvh~~~ 178 (793)
T COG1251 111 -SYPFILPIP---GSDLPG--VFVYRTIDDVEAMLDC-ARNKKKAVVIGGGLLGLEAARGLKDLGME-----VTVVHIAP 178 (793)
T ss_pred -ccccccCCC---CCCCCC--eeEEecHHHHHHHHHH-HhccCCcEEEccchhhhHHHHHHHhCCCc-----eEEEeecc
Confidence 669999999 887543 3333344443322212 34556789999999999999999998765 88886555
Q ss_pred ceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCccccccc
Q 041145 246 HWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYA 325 (522)
Q Consensus 246 ~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 325 (522)
..+ .+.+...-...+
T Consensus 179 ~lM-------------------------------------------erQLD~~ag~lL---------------------- 193 (793)
T COG1251 179 TLM-------------------------------------------ERQLDRTAGRLL---------------------- 193 (793)
T ss_pred hHH-------------------------------------------HHhhhhHHHHHH----------------------
Confidence 310 000000011111
Q ss_pred cccccccCcchhhhcccCcEEEEeCc-eeEE----ecCcEEecCCceeeccEEEEeccCCCCccccccCCCcccccccCc
Q 041145 326 SCQMAILPENFFSEAEKGNILFKRAS-KWWF----WSGGIEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADS 400 (522)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~----~~~~v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~ 400 (522)
...+.+.+|+++.+. ..++ ...+|.|+||+++++|.||+|+|++|+..+.. ...+..
T Consensus 194 -----------~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~------~aGlav- 255 (793)
T COG1251 194 -----------RRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAK------EAGLAV- 255 (793)
T ss_pred -----------HHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHH------hcCcCc-
Confidence 122334445554443 2222 12468999999999999999999999943221 111111
Q ss_pred ccccccccccccCCCCceeEeecccc-----cchhhHHHHHHHHHHHHhcCCCC
Q 041145 401 SGIMPLYRGTIHPLIPNMAFVGYIET-----VSNLQIAEIRCKWLARLADQKFK 449 (522)
Q Consensus 401 ~~~~~l~~~~~~~~~pni~~vG~~~~-----~~~~~~ae~qa~~~a~~l~g~~~ 449 (522)
+.++.+..++. ++.|+||++|-... .+....+--|++.+|.++.|...
T Consensus 256 nrGIvvnd~mq-TsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 256 NRGIVVNDYMQ-TSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred CCCeeeccccc-ccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 22556666654 78999999993211 11123455699999999987743
No 76
>PRK13984 putative oxidoreductase; Provisional
Probab=99.83 E-value=1.4e-19 Score=194.76 Aligned_cols=165 Identities=21% Similarity=0.310 Sum_probs=103.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|++|+++|..| .|++|+|||+.+.+||.+.. .. +.+....++..
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~-~i------------------------~~~~~~~~~~~ 337 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY-GI------------------------PSYRLPDEALD 337 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee-cC------------------------CcccCCHHHHH
Confidence 56899999999999999999 89999999999988887643 11 11111233344
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
......+++++ .++++++|.. + ++.+.. ...||+||+|||.. .
T Consensus 338 ~~~~~~~~~gv--~~~~~~~v~~-----~------------------------~~~~~~----~~~yD~vilAtGa~--~ 380 (604)
T PRK13984 338 KDIAFIEALGV--KIHLNTRVGK-----D------------------------IPLEEL----REKHDAVFLSTGFT--L 380 (604)
T ss_pred HHHHHHHHCCc--EEECCCEeCC-----c------------------------CCHHHH----HhcCCEEEEEcCcC--C
Confidence 44445666776 5667766621 1 001111 24699999999964 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchh----hhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCC-CCCcEEEEe
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKE----AATELLEGKKVAIIGYRKSAIDLAVECAEANQGP-NGQPCTMVI 242 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~----~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~-~~~~Vt~v~ 242 (522)
|+.+++| |.+. . .++++.++...... .......+|+|+|||||.+|+|+|..+++.+... .+.+|+++.
T Consensus 381 ~r~l~i~---G~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 381 GRSTRIP---GTDH-P-DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CccCCCC---CcCC-c-CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 6777888 7643 1 23333322110000 0001134799999999999999999998764200 013577764
No 77
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.83 E-value=2.2e-19 Score=193.65 Aligned_cols=165 Identities=21% Similarity=0.330 Sum_probs=108.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++||++|..| .|++|+|||+.+.+||.|.. ..|. |.-..++..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~-gip~------------------------~~l~~~~~~ 364 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF-GIPP------------------------FKLDKTVLS 364 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec-cCCc------------------------ccCCHHHHH
Confidence 57999999999999999999 89999999999999998864 1111 111234455
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
......+.+|+ .++++++|.. + +++.+. ...||.|++|||.. .
T Consensus 365 ~~~~~~~~~Gv--~~~~~~~v~~-----~------------------------~~~~~l----~~~~DaV~latGa~--~ 407 (639)
T PRK12809 365 QRREIFTAMGI--DFHLNCEIGR-----D------------------------ITFSDL----TSEYDAVFIGVGTY--G 407 (639)
T ss_pred HHHHHHHHCCe--EEEcCCccCC-----c------------------------CCHHHH----HhcCCEEEEeCCCC--C
Confidence 55566677776 5666765521 1 111111 34689999999965 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccC--------CCch--hhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYS--------KLDK--EAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPC 238 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~--------~~~~--~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~V 238 (522)
+..+.+| |.+. .| +++..+|. .... ........+|+|+|||+|.+|+|.|..+.+.+. ++|
T Consensus 408 ~~~~~i~---g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga----~~V 478 (639)
T PRK12809 408 MMRADLP---HEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA----ASV 478 (639)
T ss_pred CCCCCCC---CCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCC----CeE
Confidence 4556677 6542 22 22221111 0000 000123578999999999999999998888764 369
Q ss_pred EEEeecCc
Q 041145 239 TMVIRTLH 246 (522)
Q Consensus 239 t~v~R~~~ 246 (522)
|++.|++.
T Consensus 479 t~v~rr~~ 486 (639)
T PRK12809 479 TCAYRRDE 486 (639)
T ss_pred EEeeecCc
Confidence 99998764
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.80 E-value=6.9e-18 Score=173.54 Aligned_cols=170 Identities=17% Similarity=0.181 Sum_probs=108.0
Q ss_pred CCcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVEL 86 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (522)
.++|+||||||||++||..| .|++|+|||+.+.+||..+...- +.++....+
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva------------------------P~~~~~k~v 81 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA------------------------PDHPETKNV 81 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC------------------------CCcchhHHH
Confidence 56899999999999999999 38999999999999997754110 233444556
Q ss_pred HHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 87 LDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 87 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
...+..+.++.++ .+..|.+|- . .+++++- ...||.||+|||..
T Consensus 82 ~~~~~~~~~~~~v--~~~~nv~vg---~--------------------------dvtl~~L----~~~yDaVIlAtGa~- 125 (491)
T PLN02852 82 TNQFSRVATDDRV--SFFGNVTLG---R--------------------------DVSLSEL----RDLYHVVVLAYGAE- 125 (491)
T ss_pred HHHHHHHHHHCCe--EEEcCEEEC---c--------------------------cccHHHH----hhhCCEEEEecCCC-
Confidence 6666666665444 233333331 1 1333222 24699999999964
Q ss_pred CCCCCCCCCCCCCccccCCceeeccccCC----C-ch-hhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCC--------
Q 041145 167 DIPRMPAFPANKGEEIFGGKVLHSMDYSK----L-DK-EAATELLEGKKVAIIGYRKSAIDLAVECAEANQG-------- 232 (522)
Q Consensus 167 ~~p~~p~~p~~~G~~~f~g~~~hs~~~~~----~-~~-~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~-------- 232 (522)
.++.+++| |.+. ..++...++.. . +. ........+|+|+|||+|++|+|+|..|++.+.+
T Consensus 126 -~~~~l~Ip---G~d~--~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~ 199 (491)
T PLN02852 126 -SDRRLGIP---GEDL--PGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAE 199 (491)
T ss_pred -CCCCCCCC---CCCC--CCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccH
Confidence 24667788 7542 12344433310 0 00 0001123689999999999999999998764100
Q ss_pred --------CCCCcEEEEeecCc
Q 041145 233 --------PNGQPCTMVIRTLH 246 (522)
Q Consensus 233 --------~~~~~Vt~v~R~~~ 246 (522)
...++|+++.|+..
T Consensus 200 ~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 200 HALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred HHHHHHhhCCCCEEEEEEcCCh
Confidence 01357999999863
No 79
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.80 E-value=3.3e-18 Score=178.59 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=105.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||++|+++|..| .|++|+|||+.+.+||.... .. +.+....++..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~-gi------------------------p~~~~~~~~~~ 197 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY-GI------------------------PNMKLDKAIVD 197 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec-cC------------------------CCccCCHHHHH
Confidence 36999999999999999999 89999999999988876532 11 11111223444
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
+..+.++++++ .+.+++.|. . + ++.+. ....||.||+|||.. .
T Consensus 198 ~~~~~~~~~Gv--~~~~~~~v~---~--~------------------------~~~~~----~~~~~d~VilAtGa~--~ 240 (485)
T TIGR01317 198 RRIDLLSAEGI--DFVTNTEIG---V--D------------------------ISADE----LKEQFDAVVLAGGAT--K 240 (485)
T ss_pred HHHHHHHhCCC--EEECCCEeC---C--c------------------------cCHHH----HHhhCCEEEEccCCC--C
Confidence 44455566676 566666653 1 1 00000 125699999999954 3
Q ss_pred CCCCCCCCCCCccccCCceeeccccCC------Cc-h--hhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSK------LD-K--EAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCT 239 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~------~~-~--~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt 239 (522)
|..|++| |.+. .| +.+..++.. .. + ........+|+|+|||+|.+|+|+|..+.+.+. +.|+
T Consensus 241 ~~~l~i~---G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga----~~V~ 311 (485)
T TIGR01317 241 PRDLPIP---GREL-KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA----ASVH 311 (485)
T ss_pred CCcCCCC---CcCC-CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCC----CEEE
Confidence 7778888 7542 22 222111100 00 0 000112578999999999999999888887763 3699
Q ss_pred EEeecCc
Q 041145 240 MVIRTLH 246 (522)
Q Consensus 240 ~v~R~~~ 246 (522)
++.+.+.
T Consensus 312 vv~~~~~ 318 (485)
T TIGR01317 312 QFEIMPK 318 (485)
T ss_pred EEEecCC
Confidence 9987764
No 80
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.3e-18 Score=148.09 Aligned_cols=179 Identities=19% Similarity=0.252 Sum_probs=128.7
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (522)
.+|+|||+||++.+||..+ ..+++++||--- .|| .-|+-.+.+....-.|++|| .=..+.++.+.
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~-----i~pGGQLtTTT~veNfPGFP-------dgi~G~~l~d~ 75 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANG-----IAPGGQLTTTTDVENFPGFP-------DGITGPELMDK 75 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccC-----cCCCceeeeeeccccCCCCC-------cccccHHHHHH
Confidence 3899999999999999999 788999999631 111 23344444444444455443 22467889999
Q ss_pred HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCCC
Q 041145 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIP 169 (522)
Q Consensus 90 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p 169 (522)
+++.+.+||. .| +-..|.+++. . ...+.|.++.. .+.+|.||+|||.. .
T Consensus 76 mrkqs~r~Gt--~i-~tEtVskv~~--s-------------------skpF~l~td~~----~v~~~avI~atGAs---A 124 (322)
T KOG0404|consen 76 MRKQSERFGT--EI-ITETVSKVDL--S-------------------SKPFKLWTDAR----PVTADAVILATGAS---A 124 (322)
T ss_pred HHHHHHhhcc--ee-eeeehhhccc--c-------------------CCCeEEEecCC----ceeeeeEEEecccc---e
Confidence 9999999986 33 3456666765 2 34566666443 69999999999965 4
Q ss_pred CCCCCCCCCCc--cccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 170 RMPAFPANKGE--EIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 170 ~~p~~p~~~G~--~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+...+| |. .+|-.+=+.++...+-. ...+++|..+|||||-|++|=|..|.+.+. +|+++.|+++
T Consensus 125 kRl~~p---g~ge~~fWqrGiSaCAVCDGa----apifrnk~laVIGGGDsA~EEA~fLtkyas-----kVyii~Rrd~ 191 (322)
T KOG0404|consen 125 KRLHLP---GEGEGEFWQRGISACAVCDGA----APIFRNKPLAVIGGGDSAMEEALFLTKYAS-----KVYIIHRRDH 191 (322)
T ss_pred eeeecC---CCCcchHHhcccchhhcccCc----chhhcCCeeEEEcCcHHHHHHHHHHHhhcc-----EEEEEEEhhh
Confidence 555677 65 33655556666665532 345899999999999999999999999865 5999999886
No 81
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.79 E-value=6e-17 Score=160.47 Aligned_cols=387 Identities=17% Similarity=0.166 Sum_probs=208.7
Q ss_pred CcEEEECCCHHHHHHHHHh-----CCCCcEEEccCCCCC-cccCCCccCcccccCCCCCccc--CCCCC-----------
Q 041145 12 SKIGIIGAGISGIATAKQL-----RHYDPLVFEATNSIG-GVWKHCSFNSTKLQTPRCDFEF--SDYPW----------- 72 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l-----~g~~v~v~e~~~~~G-G~w~~~~~~~~~~~~~~~~~~~--~~~~~----------- 72 (522)
++|+|||+|++|+++|.+| ....+.|||+.+.+| |+-+...-|...+|+++..|+. +|.|-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 4899999999999999999 122399999999987 5666656667778888766653 34220
Q ss_pred ----CC---CCCCCCCChHHHHHHHHHHHHhcCCcC----ceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEE
Q 041145 73 ----PE---RDDASFPSHVELLDYLHGYAVHFDVLK----YIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWE 141 (522)
Q Consensus 73 ----~~---~~~~~~~~~~~~~~yl~~~~~~~~l~~----~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (522)
++ ...+.|+++..+..|+.+....+--.. .....++++++.+ +++ .+.|.
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~--~~n-----------------~~~~~ 142 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQ--DTN-----------------AGGYL 142 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeeccee--ccC-----------------CceEE
Confidence 10 122678889888888877655442111 2233556777766 322 45677
Q ss_pred EEEEeCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCc-eeeccccCCCchhhhhhccCCCeEEEECCCCCHH
Q 041145 142 VAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGK-VLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAI 220 (522)
Q Consensus 142 v~~~~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~-~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~ 220 (522)
++..++. +..||.+|+|||+. .|..+. - ..+|.|. -+++..|.... . .....+.+|+|+|+|.+.+
T Consensus 143 ~~~~~g~---~~~ad~~Vlatgh~--~~~~~~-~----~~~~~~~~~~ia~~~~~~~-l--d~v~~~drVli~GsgLt~~ 209 (474)
T COG4529 143 VTTADGP---SEIADIIVLATGHS--APPADP-A----ARDLKGSPRLIADPYPANA-L--DGVDADDRVLIVGSGLTSI 209 (474)
T ss_pred EecCCCC---eeeeeEEEEeccCC--CCCcch-h----hhccCCCcceeccccCCcc-c--ccccCCCceEEecCCchhH
Confidence 7777775 78999999999964 233222 1 1233332 23444444311 0 2234566799999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeecCceeecCCCCC--CcchHHHHHh----------HhhhhccCC--CCchhHHHHHhh
Q 041145 221 DLAVECAEANQGPNGQPCTMVIRTLHWTLPSYRIW--GLPFFLFYST----------RSSQFLHPR--PNLGFLRTFLCS 286 (522)
Q Consensus 221 dia~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~--~~p~~~~~~~----------r~~~~~~~~--~~~~~~~~~~~~ 286 (522)
|....|...++. .+||+++|+. +.|..... ..|+...... -+...+... .+..| +.
T Consensus 210 D~v~~l~~~gh~---g~It~iSRrG--l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w-----~~ 279 (474)
T COG4529 210 DQVLVLRRRGHK---GPITAISRRG--LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDW-----RD 279 (474)
T ss_pred HHHHHHhccCCc---cceEEEeccc--cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCH-----HH
Confidence 999999997764 7899999998 44443322 1231111100 000111000 00000 00
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCc--ccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCceeEEecC--c--E
Q 041145 287 ILSPMRKAISKFIESYLVWKLPL--VKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRASKWWFWSG--G--I 360 (522)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~i~~~~~~--~--v 360 (522)
.+..++......|+ .++. .+..+.-..+++..+.....+.+....-..+.+|.++++.+.+.++... + |
T Consensus 280 v~D~lR~~~~~~wq-----~l~~~er~rf~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v 354 (474)
T COG4529 280 VVDGLRPQGQWIWQ-----NLPAVERRRFERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAV 354 (474)
T ss_pred HHHhhhhhhhHHHH-----hCCHHHHHHHHHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceE
Confidence 11111111111111 1110 0011122223333222222244555566678889999999886655432 2 4
Q ss_pred Eec----CCc-eeeccEEEEeccCCCCccccc--cCCCccc-cccc-C-ccccccccccccc-----CCCCceeEeeccc
Q 041145 361 EFE----DKS-KLEADVVLLATGYDGKKKLQS--ILPKPFS-SLLA-D-SSGIMPLYRGTIH-----PLIPNMAFVGYIE 425 (522)
Q Consensus 361 ~~~----dG~-~~~~D~VI~ATG~~~~~~l~~--~~~~~~~-~~~~-~-~~~~~~l~~~~~~-----~~~pni~~vG~~~ 425 (522)
.+. +.+ ++++|.||.|||......+.. ++..-+. ++.. + ...++.+-....+ ...+++|++|-..
T Consensus 355 ~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt 434 (474)
T COG4529 355 TYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLT 434 (474)
T ss_pred EeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeecccc
Confidence 432 333 378999999999988743321 1100000 0110 0 1112221111111 1257999999554
Q ss_pred ccch-----hhHHHHHHHHHHHHhc
Q 041145 426 TVSN-----LQIAEIRCKWLARLAD 445 (522)
Q Consensus 426 ~~~~-----~~~ae~qa~~~a~~l~ 445 (522)
.+.. .+..-.|+..+|+.+.
T Consensus 435 ~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 435 RGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred CCchhhhccChHHHHHHHHHHHHHh
Confidence 3321 2455567777777665
No 82
>PRK09897 hypothetical protein; Provisional
Probab=99.77 E-value=1.1e-16 Score=166.71 Aligned_cols=196 Identities=20% Similarity=0.266 Sum_probs=119.3
Q ss_pred CcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCC-cc-cCCCccCcccccCCCCCcccC-------CCC-------
Q 041145 12 SKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIG-GV-WKHCSFNSTKLQTPRCDFEFS-------DYP------- 71 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~G-G~-w~~~~~~~~~~~~~~~~~~~~-------~~~------- 71 (522)
++|+|||||++|+++|.+| ..++|+|||++..+| |. |.. .-++..++++...++.+ .+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~-~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD-EENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC-CCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 3899999999999999999 346899999998888 54 432 22222222221111111 110
Q ss_pred -----CCC--CCCCCCCChHHHHHHHHHHHHhc-------CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCC
Q 041145 72 -----WPE--RDDASFPSHVELLDYLHGYAVHF-------DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGH 137 (522)
Q Consensus 72 -----~~~--~~~~~~~~~~~~~~yl~~~~~~~-------~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (522)
... .....|+++..+..|++++.+.+ +..-.+..+++|++++. + .
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~--~-------------------~ 139 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQI--T-------------------N 139 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEE--e-------------------C
Confidence 000 01145788888888877755433 21114456779999977 3 3
Q ss_pred CCEEEEEEeCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCC
Q 041145 138 PVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRK 217 (522)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~ 217 (522)
+.|.|++.++. .++.+|+||+|||+. .|..+ + +... .....|.... .....+.+|+|+|.|.
T Consensus 140 ~g~~V~t~~gg--~~i~aD~VVLAtGh~--~p~~~--~---~~~~-----yi~~pw~~~~----~~~i~~~~V~I~GtGL 201 (534)
T PRK09897 140 AGVMLATNQDL--PSETFDLAVIATGHV--WPDEE--E---ATRT-----YFPSPWSGLM----EAKVDACNVGIMGTSL 201 (534)
T ss_pred CEEEEEECCCC--eEEEcCEEEECCCCC--CCCCC--h---hhcc-----ccCCCCcchh----hcCCCCCeEEEECCCH
Confidence 45777765432 368999999999965 23322 1 2111 1123332210 1223478999999999
Q ss_pred CHHHHHHHHHHhcCC----------------CCCCcEEEEeecCce
Q 041145 218 SAIDLAVECAEANQG----------------PNGQPCTMVIRTLHW 247 (522)
Q Consensus 218 sg~dia~~l~~~~~~----------------~~~~~Vt~v~R~~~~ 247 (522)
|++|++..|...+.. .+..++++++|+...
T Consensus 202 t~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 202 SGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred HHHHHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence 999999999865210 013579999999764
No 83
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.4e-16 Score=144.84 Aligned_cols=173 Identities=17% Similarity=0.218 Sum_probs=120.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.+||+|||+||+|-+||.+. +|++.-++-. ++||.-... +. ...|- .-.+..+.++..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT----~~---------IENfI-----sv~~teGpkl~~ 270 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDT----MG---------IENFI-----SVPETEGPKLAA 270 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccc----cc---------hhhee-----ccccccchHHHH
Confidence 57999999999999999998 8888765533 367654431 10 00000 023445677888
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
-++.-.++|++ .+.--.+.+++.+... . .+-..|++.++. .+.++.||+|||..
T Consensus 271 ale~Hv~~Y~v--Dimn~qra~~l~~a~~-~-----------------~~l~ev~l~nGa---vLkaktvIlstGAr--- 324 (520)
T COG3634 271 ALEAHVKQYDV--DVMNLQRASKLEPAAV-E-----------------GGLIEVELANGA---VLKARTVILATGAR--- 324 (520)
T ss_pred HHHHHHhhcCc--hhhhhhhhhcceecCC-C-----------------CccEEEEecCCc---eeccceEEEecCcc---
Confidence 88888888876 3333345555555221 1 345678888886 89999999999965
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEee
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIR 243 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R 243 (522)
-+-.++| |.++|..+=+..+...+ ...|+||+|+|||||+||+|.|-+|+.... +||++.=
T Consensus 325 WRn~nvP---GE~e~rnKGVayCPHCD------GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~-----hVtllEF 385 (520)
T COG3634 325 WRNMNVP---GEDEYRNKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVE-----HVTLLEF 385 (520)
T ss_pred hhcCCCC---chHHHhhCCeeeCCCCC------CcccCCceEEEECCCcchHHHHHhHHhhhh-----eeeeeec
Confidence 3444678 98888765444444444 456999999999999999999999998754 4998853
No 84
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.65 E-value=2.9e-14 Score=144.38 Aligned_cols=40 Identities=33% Similarity=0.420 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHh---CCCCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL---RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l---~g~~v~v~e~~~~~GG~w~~ 50 (522)
.++|+||||||||++||..| .|++|+|||+.+.+||.++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 46899999999999999987 69999999999999999875
No 85
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.57 E-value=8.6e-14 Score=132.46 Aligned_cols=166 Identities=23% Similarity=0.316 Sum_probs=104.2
Q ss_pred CCcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVEL 86 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (522)
.++|+|||+||||+.+|..| .+++|.|+|+.+.++|.-+. ..-|.+.++
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy---------------------------GVAPDHpEv 72 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY---------------------------GVAPDHPEV 72 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee---------------------------ccCCCCcch
Confidence 46999999999999999999 35899999999998887654 223344444
Q ss_pred H---HHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeee
Q 041145 87 L---DYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIG 163 (522)
Q Consensus 87 ~---~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG 163 (522)
. .-+...+++. +.+|-..| .- .. .|++.+- +-.||.||+|.|
T Consensus 73 KnvintFt~~aE~~----rfsf~gNv---~v--G~----------------------dvsl~eL----~~~ydavvLaYG 117 (468)
T KOG1800|consen 73 KNVINTFTKTAEHE----RFSFFGNV---KV--GR----------------------DVSLKEL----TDNYDAVVLAYG 117 (468)
T ss_pred hhHHHHHHHHhhcc----ceEEEecc---ee--cc----------------------cccHHHH----hhcccEEEEEec
Confidence 4 3444444442 22222211 11 00 1333322 457999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeeccccCC-----CchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCC------
Q 041145 164 KFGDIPRMPAFPANKGEEIFGGKVLHSMDYSK-----LDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQG------ 232 (522)
Q Consensus 164 ~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~-----~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~------ 232 (522)
+. .++..+|| |.+. . -++.+..+.. ++.+.-..++.+.+|+|||.|+.++|+|..|......
T Consensus 118 a~--~dR~L~IP---Ge~l-~-~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TD 190 (468)
T KOG1800|consen 118 AD--GDRRLDIP---GEEL-S-GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTD 190 (468)
T ss_pred CC--CCcccCCC---Cccc-c-cceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccC
Confidence 76 47888999 8652 1 2333333221 1111012356789999999999999999987643111
Q ss_pred -----------CCCCcEEEEeecC
Q 041145 233 -----------PNGQPCTMVIRTL 245 (522)
Q Consensus 233 -----------~~~~~Vt~v~R~~ 245 (522)
..-+.|+++.|+.
T Consensus 191 i~~~aL~~L~~s~VkdV~lvgRRg 214 (468)
T KOG1800|consen 191 IPKLALNLLKRSNVKDVKLVGRRG 214 (468)
T ss_pred CcHHHHhhhhcCCcceEEEEeccC
Confidence 1245688888775
No 86
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.56 E-value=3.3e-13 Score=139.26 Aligned_cols=287 Identities=15% Similarity=0.115 Sum_probs=167.1
Q ss_pred EEEECCCHHHHHHHHHh----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHH
Q 041145 14 IGIIGAGISGIATAKQL----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89 (522)
Q Consensus 14 vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (522)
++|||+|++|+.+|..+ .+.+++++.+..... |..+. .+...........++...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~-------~~~~~--------------~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS-------YYRCP--------------LSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC-------CCCCc--------------cchHHhcccCCHHHhccc
Confidence 58999999999999977 566888887765431 11110 000000001111111111
Q ss_pred HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCCC
Q 041145 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIP 169 (522)
Q Consensus 90 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p 169 (522)
.... .+.++ .+..+++|++++. .. -.|.+.++ .+.||+||+|||. .|
T Consensus 60 ~~~~-~~~~i--~~~~~~~v~~id~--~~---------------------~~v~~~~g----~~~yd~LvlatGa---~~ 106 (415)
T COG0446 60 PRFN-RATGI--DVRTGTEVTSIDP--EN---------------------KVVLLDDG----EIEYDYLVLATGA---RP 106 (415)
T ss_pred chhH-HhhCC--EEeeCCEEEEecC--CC---------------------CEEEECCC----cccccEEEEcCCC---cc
Confidence 1111 34445 6778889999876 21 14666555 6899999999994 46
Q ss_pred CCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCceee
Q 041145 170 RMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWTL 249 (522)
Q Consensus 170 ~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~~ 249 (522)
..++.. . ...+.+...+..... ........++++|||+|..|+++|..+++.+.+ |+++.+.+.+..
T Consensus 107 ~~~~~~---~----~~~~~~~~~~~~~~~-~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~-----v~l~e~~~~~~~ 173 (415)
T COG0446 107 RPPPIS---D----WEGVVTLRLREDAEA-LKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK-----VTLIEAADRLGG 173 (415)
T ss_pred cCCCcc---c----cCceEEECCHHHHHH-HHHHHhccCeEEEECCcHHHHHHHHHHHHcCCe-----EEEEEcccccch
Confidence 665411 1 111222222222110 000111248999999999999999999998754 999998876321
Q ss_pred cCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCccccccccccc
Q 041145 250 PSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQM 329 (522)
Q Consensus 250 p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~ 329 (522)
+.. . ..+.+
T Consensus 174 ~~~-----------------------------------~----~~~~~-------------------------------- 182 (415)
T COG0446 174 QLL-----------------------------------D----PEVAE-------------------------------- 182 (415)
T ss_pred hhh-----------------------------------h----HHHHH--------------------------------
Confidence 100 0 01111
Q ss_pred cccCcchhhhcccCcEEEEeCc-eeEEecCc-------EEecCCceeeccEEEEeccCCCCccccccCCCcccccccCcc
Q 041145 330 AILPENFFSEAEKGNILFKRAS-KWWFWSGG-------IEFEDKSKLEADVVLLATGYDGKKKLQSILPKPFSSLLADSS 401 (522)
Q Consensus 330 ~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~-------v~~~dG~~~~~D~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~ 401 (522)
.+.+.++..+|+++.+. +.+++.+. +...++..+++|.++.++|.+++..+.. ..... .....
T Consensus 183 -----~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~---~~~~~-~~~~~ 253 (415)
T COG0446 183 -----ELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLAN---DALPG-LALAG 253 (415)
T ss_pred -----HHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHh---hCccc-eeccC
Confidence 11123334457776665 56666532 5778888999999999999999843221 11101 12234
Q ss_pred cccccccccccCCCCceeEeecccc-----------cchhhHHHHHHHHHHHHhcCC
Q 041145 402 GIMPLYRGTIHPLIPNMAFVGYIET-----------VSNLQIAEIRCKWLARLADQK 447 (522)
Q Consensus 402 ~~~~l~~~~~~~~~pni~~vG~~~~-----------~~~~~~ae~qa~~~a~~l~g~ 447 (522)
+.+.++..+.....+++|++|.... ...++.+..|++.++..+.+.
T Consensus 254 g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 254 GAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred CCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 4466666655435899999995322 112467889999999988864
No 87
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.56 E-value=1.7e-14 Score=147.01 Aligned_cols=162 Identities=26% Similarity=0.355 Sum_probs=111.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+||||||+||++|..| .|++|+|||+.+..||.-.. .. +.|.-..++.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y-GI------------------------P~~kl~k~i~d 177 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY-GI------------------------PDFKLPKDILD 177 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe-cC------------------------chhhccchHHH
Confidence 46999999999999999999 89999999999999998754 11 34444556677
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
....+.++.++ .++.+++|-. .++++.- ...||+|++|+|.. .
T Consensus 178 ~~i~~l~~~Gv--~~~~~~~vG~-----------------------------~it~~~L----~~e~Dav~l~~G~~--~ 220 (457)
T COG0493 178 RRLELLERSGV--EFKLNVRVGR-----------------------------DITLEEL----LKEYDAVFLATGAG--K 220 (457)
T ss_pred HHHHHHHHcCe--EEEEcceECC-----------------------------cCCHHHH----HHhhCEEEEecccc--C
Confidence 77777777775 6666666531 0222211 24469999999975 6
Q ss_pred CCCCCCCCCCCccccCCceeeccccCCCchh--------hhhhccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEE
Q 041145 169 PRMPAFPANKGEEIFGGKVLHSMDYSKLDKE--------AATELLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTM 240 (522)
Q Consensus 169 p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~--------~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~ 240 (522)
|+..++| |.+. ..+..+.+|...... .......||+|+|||+|.|++|++......+. ++|+.
T Consensus 221 ~~~l~i~---g~d~--~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga----~~v~~ 291 (457)
T COG0493 221 PRPLDIP---GEDA--KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA----KSVTC 291 (457)
T ss_pred CCCCCCC---CcCC--CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC----eEEEE
Confidence 8877788 7652 223333333210000 00122356999999999999999988888775 47888
Q ss_pred Eee
Q 041145 241 VIR 243 (522)
Q Consensus 241 v~R 243 (522)
+.|
T Consensus 292 ~~~ 294 (457)
T COG0493 292 FYR 294 (457)
T ss_pred ecc
Confidence 863
No 88
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.55 E-value=1.3e-13 Score=149.11 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
.++|+|||||||||++|..| .|++|+|||+.+..|+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 57999999999999999999 8999999999765444
No 89
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.51 E-value=3.5e-13 Score=142.35 Aligned_cols=156 Identities=22% Similarity=0.325 Sum_probs=97.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
-++|+|||+||+||+||-+| .|+.|+|+||.+++||.-.. ..|++.+ ... +.+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y-gipnmkl-----------------------dk~-vv~ 1839 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY-GIPNMKL-----------------------DKF-VVQ 1839 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee-cCCccch-----------------------hHH-HHH
Confidence 46999999999999999999 89999999999999998755 3343321 111 222
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.--+....-|+ .+..|+++-. +|....- .-..|.+|+|+|+. .
T Consensus 1840 rrv~ll~~egi--~f~tn~eigk-----------------------------~vs~d~l----~~~~daiv~a~gst--~ 1882 (2142)
T KOG0399|consen 1840 RRVDLLEQEGI--RFVTNTEIGK-----------------------------HVSLDEL----KKENDAIVLATGST--T 1882 (2142)
T ss_pred HHHHHHHhhCc--eEEeeccccc-----------------------------cccHHHH----hhccCeEEEEeCCC--C
Confidence 22333343344 2222333211 1222211 35689999999964 6
Q ss_pred CCCCCCCCCCCccc----cCCceeeccccCCCch--hhhhhccCCCeEEEECCCCCHHHHHHHHHHhcC
Q 041145 169 PRMPAFPANKGEEI----FGGKVLHSMDYSKLDK--EAATELLEGKKVAIIGYRKSAIDLAVECAEANQ 231 (522)
Q Consensus 169 p~~p~~p~~~G~~~----f~g~~~hs~~~~~~~~--~~~~~~~~~k~V~VIG~G~sg~dia~~l~~~~~ 231 (522)
|+-.++| |.+. |.-..+|...-.-++. .......+||+|+|||||-+|-|+...-.+++.
T Consensus 1883 prdlpv~---grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~ 1948 (2142)
T KOG0399|consen 1883 PRDLPVP---GRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGC 1948 (2142)
T ss_pred CcCCCCC---CccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhcc
Confidence 8887888 7652 2222333321110100 001234689999999999999998887777764
No 90
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.31 E-value=2.5e-11 Score=116.82 Aligned_cols=190 Identities=18% Similarity=0.252 Sum_probs=111.2
Q ss_pred EEEEEeCCeeEEEEECEEEEeeeccCCCCCCCC-CCCCCCccccCCc--eee-ccccCCCchhhhhhccCCCeEEEECCC
Q 041145 141 EVAVETNQAIQWYGFELLVMCIGKFGDIPRMPA-FPANKGEEIFGGK--VLH-SMDYSKLDKEAATELLEGKKVAIIGYR 216 (522)
Q Consensus 141 ~v~~~~~~~~~~~~~d~vViAtG~~s~~p~~p~-~p~~~G~~~f~g~--~~h-s~~~~~~~~~~~~~~~~~k~V~VIG~G 216 (522)
.|+++++. ++.||.++||||.. |+-.+ |... +. +...+ ++| ..+|+.++.. ...-++|.|||+|
T Consensus 289 ~V~LnDG~---~I~YdkcLIATG~~---Pk~l~~~~~A-~~-evk~kit~fr~p~DF~rlek~----~aek~siTIiGnG 356 (659)
T KOG1346|consen 289 KVILNDGT---TIGYDKCLIATGVR---PKKLQVFEEA-SE-EVKQKITYFRYPADFKRLEKG----LAEKQSITIIGNG 356 (659)
T ss_pred eEEecCCc---EeehhheeeecCcC---cccchhhhhc-CH-HhhhheeEEecchHHHHHHHh----hhhcceEEEEcCc
Confidence 57888875 89999999999954 65332 2200 11 11122 222 2344443211 1123789999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCcEEEEeecCceeecCCCCCCcchHHHHHhHhhhhccCCCCchhHHHHHhhhhhhhHHHHH
Q 041145 217 KSAIDLAVECAEANQGPNGQPCTMVIRTLHWTLPSYRIWGLPFFLFYSTRSSQFLHPRPNLGFLRTFLCSILSPMRKAIS 296 (522)
Q Consensus 217 ~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (522)
..|.|+|+.|.+.... ++.+|+.+..... | +.
T Consensus 357 flgSELacsl~rk~r~-~g~eV~QvF~Ek~-----------n------------------------------------m~ 388 (659)
T KOG1346|consen 357 FLGSELACSLKRKYRN-EGVEVHQVFEEKY-----------N------------------------------------ME 388 (659)
T ss_pred chhhhHHHHHHHhhhc-cCcEEEEeecccC-----------C------------------------------------hh
Confidence 9999999999886431 2556665533221 0 01
Q ss_pred HHHHHHHhhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeecc
Q 041145 297 KFIESYLVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEAD 371 (522)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D 371 (522)
+.+.++ +++--.+.+++++|.++++. |.++.. .. +.|+||.++..|
T Consensus 389 kiLPey-----------------------------ls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD 439 (659)
T KOG1346|consen 389 KILPEY-----------------------------LSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTD 439 (659)
T ss_pred hhhHHH-----------------------------HHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeee
Confidence 111111 11222356778999999887 554432 22 678999999999
Q ss_pred EEEEeccCCCCccccccCCCcccccccCcccccccccccccCCCCceeEeeccc
Q 041145 372 VVLLATGYDGKKKLQSILPKPFSSLLADSSGIMPLYRGTIHPLIPNMAFVGYIE 425 (522)
Q Consensus 372 ~VI~ATG~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pni~~vG~~~ 425 (522)
+||.|+|-.||..+.. ...+++- ..-|++++...+.. -.|+|+.|...
T Consensus 440 ~vVvavG~ePN~ela~---~sgLeiD-~~lGGfrvnaeL~a--r~NvwvAGdaa 487 (659)
T KOG1346|consen 440 LVVVAVGEEPNSELAE---ASGLEID-EKLGGFRVNAELKA--RENVWVAGDAA 487 (659)
T ss_pred eEEEEecCCCchhhcc---cccceee-cccCcEEeeheeec--ccceeeecchh
Confidence 9999999999964421 1111111 12345555544432 36888888443
No 91
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.30 E-value=3e-11 Score=106.57 Aligned_cols=126 Identities=26% Similarity=0.377 Sum_probs=91.7
Q ss_pred EEECCCHHHHHHHHHh--C-----CCCcEEEccCCCC-CcccCCCccCcccccCCCCCcccC-CCC---CC---------
Q 041145 15 GIIGAGISGIATAKQL--R-----HYDPLVFEATNSI-GGVWKHCSFNSTKLQTPRCDFEFS-DYP---WP--------- 73 (522)
Q Consensus 15 vIIGaG~aGl~~a~~l--~-----g~~v~v~e~~~~~-GG~w~~~~~~~~~~~~~~~~~~~~-~~~---~~--------- 73 (522)
+|||+|++|++++.+| . ..+|+|||+++.- |+.|....-+...+|++...|+.. +.| +.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999 3 4589999996653 468877446777889988777653 222 11
Q ss_pred ---CCCCCCCCChHHHHHHHHHHHHhcC--CcC---ceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEE
Q 041145 74 ---ERDDASFPSHVELLDYLHGYAVHFD--VLK---YIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVE 145 (522)
Q Consensus 74 ---~~~~~~~~~~~~~~~yl~~~~~~~~--l~~---~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (522)
......|+++..+.+||+++.+..- +.. ......+|++++. . .+.|.|.+.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~--~-------------------~~~~~v~~~ 139 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR--D-------------------DDGYRVVTA 139 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE--c-------------------CCcEEEEEC
Confidence 1112578999999999988876642 111 1234568888887 3 345888887
Q ss_pred eCCeeEEEEECEEEEeeec
Q 041145 146 TNQAIQWYGFELLVMCIGK 164 (522)
Q Consensus 146 ~~~~~~~~~~d~vViAtG~ 164 (522)
++. .+.||.||+|||+
T Consensus 140 ~g~---~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 140 DGQ---SIRADAVVLATGH 155 (156)
T ss_pred CCC---EEEeCEEEECCCC
Confidence 775 7899999999995
No 92
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28 E-value=2.4e-11 Score=118.10 Aligned_cols=135 Identities=18% Similarity=0.248 Sum_probs=94.4
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC--------cccCC---CccCcccccCC---CCC----cccC-
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG--------GVWKH---CSFNSTKLQTP---RCD----FEFS- 68 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G--------G~w~~---~~~~~~~~~~~---~~~----~~~~- 68 (522)
+.++|+|||||+|||.||..+ .|.+|+|||+.+.+| |-|+- +.+.....+.| +.+ ..|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 367999999999999999999 899999999999886 44432 11222223333 111 1121
Q ss_pred ----------CCCCCCC-CCCCCCC---hHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCC
Q 041145 69 ----------DYPWPER-DDASFPS---HVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLL 134 (522)
Q Consensus 69 ----------~~~~~~~-~~~~~~~---~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
+.++.+. ..+.||. ...+.+-+..-+++.++ .++.+++|.+++. +
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~--~----------------- 140 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEK--D----------------- 140 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEe--c-----------------
Confidence 1122221 1255664 56777777777888888 8999999999988 3
Q ss_pred CCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCCCCC
Q 041145 135 KGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPRM 171 (522)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p~~ 171 (522)
+..+.|.+.++. ++.||.||+|||.. |.|++
T Consensus 141 --~~~f~l~t~~g~---~i~~d~lilAtGG~-S~P~l 171 (408)
T COG2081 141 --DSGFRLDTSSGE---TVKCDSLILATGGK-SWPKL 171 (408)
T ss_pred --CceEEEEcCCCC---EEEccEEEEecCCc-CCCCC
Confidence 235778877774 79999999999988 66754
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.20 E-value=1.7e-09 Score=106.63 Aligned_cols=38 Identities=34% Similarity=0.572 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCccc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVW 48 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w 48 (522)
.++++|||||+|||+||..| .|++|.++|+++.+||.-
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence 57899999999999999999 999999999999999964
No 94
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.15 E-value=1.2e-09 Score=99.31 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=58.8
Q ss_pred CEEEEEEeCCeeEEEEECEEEEeeeccCCCCCCCCCCCCCCccccCCceeeccccCCCchhhhhhccCCCeEEEECCCCC
Q 041145 139 VWEVAVETNQAIQWYGFELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKS 218 (522)
Q Consensus 139 ~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~s 218 (522)
+..+.++++. .+.|++|++|+| ..|..- .. |.+ ..++-.++-++. ++......+.|+|+|+|.|-+
T Consensus 80 ehci~t~~g~---~~ky~kKOG~tg---~kPklq-~E---~~n---~~Iv~irDtDsa-Qllq~kl~kaK~VlilgnGgi 145 (334)
T KOG2755|consen 80 EHCIHTQNGE---KLKYFKLCLCTG---YKPKLQ-VE---GIN---PKIVGIRDTDSA-QLLQCKLVKAKIVLILGNGGI 145 (334)
T ss_pred cceEEecCCc---eeeEEEEEEecC---CCccee-ec---CCC---ceEEEEecCcHH-HHHHHHHhhcceEEEEecCch
Confidence 3467777775 899999999999 556542 22 322 234444443331 111133467899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 219 AIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 219 g~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
++|++.|+... .|+|....+.
T Consensus 146 a~El~yElk~~-------nv~w~ikd~~ 166 (334)
T KOG2755|consen 146 AMELTYELKIL-------NVTWKIKDEG 166 (334)
T ss_pred hHHHHHHhhcc-------eeEEEecchh
Confidence 99999999764 3898887653
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.12 E-value=1.2e-10 Score=118.18 Aligned_cols=133 Identities=23% Similarity=0.315 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC--------cccCC---Cc-cCccccc---CCCCCc----ccC--
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG--------GVWKH---CS-FNSTKLQ---TPRCDF----EFS-- 68 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G--------G~w~~---~~-~~~~~~~---~~~~~~----~~~-- 68 (522)
+||+|||||+|||.||..+ .|.+|+|+|+++.+| |.|+- +. ....... .+..+. .|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 5899999999999999999 899999999999986 33331 00 0011111 111110 011
Q ss_pred ---------CCCCCC-CCCCCCC---ChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCC
Q 041145 69 ---------DYPWPE-RDDASFP---SHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLK 135 (522)
Q Consensus 69 ---------~~~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (522)
+.+... .....|| ...++.+-|...+++.++ .++++++|.++...+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~~------------------- 139 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKKE------------------- 139 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEET-------------------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeecC-------------------
Confidence 112111 1113343 456788888888888888 899999999998732
Q ss_pred CCCCEEEEEEeCCeeEEEEECEEEEeeeccCCCCC
Q 041145 136 GHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIPR 170 (522)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p~ 170 (522)
++.|.|.+++. .++.+|.||+|||.. +.|.
T Consensus 140 -~~~f~v~~~~~---~~~~a~~vILAtGG~-S~p~ 169 (409)
T PF03486_consen 140 -DGVFGVKTKNG---GEYEADAVILATGGK-SYPK 169 (409)
T ss_dssp -TEEEEEEETTT---EEEEESEEEE----S-SSGG
T ss_pred -CceeEeeccCc---ccccCCEEEEecCCC-Cccc
Confidence 23477777333 389999999999987 4454
No 96
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.11 E-value=3.5e-11 Score=111.17 Aligned_cols=151 Identities=28% Similarity=0.337 Sum_probs=83.1
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH--
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD-- 88 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 88 (522)
||+|||||+||++||.+| .+++++|+|+.+..+.. .. ..+...+. ...........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~-~~~~~~~~------------------~~~~~~~~~~~~~ 60 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SG-CIPSPLLV------------------EIAPHRHEFLPAR 60 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HS-HHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-cc-cccccccc------------------ccccccccccccc
Confidence 699999999999999999 89999999887543210 00 00000000 00000011110
Q ss_pred --HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 89 --YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 89 --yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.+..+..++ .+.++++|.+++.....- ....+.+......+..++.||+||+|||.
T Consensus 61 ~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d~lviAtG~-- 120 (201)
T PF07992_consen 61 LFKLVDQLKNRGV--EIRLNAKVVSIDPESKRV----------------VCPAVTIQVVETGDGREIKYDYLVIATGS-- 120 (201)
T ss_dssp HGHHHHHHHHHTH--EEEHHHTEEEEEESTTEE----------------EETCEEEEEEETTTEEEEEEEEEEEESTE--
T ss_pred ccccccccccceE--EEeecccccccccccccc----------------ccCcccceeeccCCceEecCCeeeecCcc--
Confidence 11111233444 466788999998722100 00122333322333468999999999994
Q ss_pred CCCCCCCCCCCCCcc--ccCCceeeccccCCCchhhhhhccCCCeEEEEC
Q 041145 167 DIPRMPAFPANKGEE--IFGGKVLHSMDYSKLDKEAATELLEGKKVAIIG 214 (522)
Q Consensus 167 ~~p~~p~~p~~~G~~--~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG 214 (522)
.|+.|.+| |.+ .+...+.++..+.. .....++|+|||
T Consensus 121 -~~~~~~i~---g~~~~~~~~~~~~~~~~~~-------~~~~~~~v~VvG 159 (201)
T PF07992_consen 121 -RPRTPNIP---GEEVAYFLRGVDDAQRFLE-------LLESPKRVAVVG 159 (201)
T ss_dssp -EEEEESST---TTTTECBTTSEEHHHHHHT-------HSSTTSEEEEES
T ss_pred -ccceeecC---CCccccccccccccccccc-------cccccccccccc
Confidence 47888888 763 12223444444432 112345999999
No 97
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.00 E-value=2e-09 Score=105.61 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=82.1
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCcc-C---------cccc-cCCCCCcccC------CCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSF-N---------STKL-QTPRCDFEFS------DYPW 72 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~-~---------~~~~-~~~~~~~~~~------~~~~ 72 (522)
+||+|||||++|+++|..| .|++|+|+|+.+..+..+..... + .... ........+. ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 4899999999999999999 89999999999876653332100 0 0000 0000000000 1111
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEE
Q 041145 73 PERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQW 152 (522)
Q Consensus 73 ~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (522)
+... ....++.++.+.+.+.+++.+. .+.++++|+++.. + .+.+.+.+.++ ..+
T Consensus 81 ~~~~-~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~--~-------------------~~~~~~~~~~~--~~~ 134 (295)
T TIGR02032 81 ETEL-AYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEI--H-------------------DDRVVVIVRGG--EGT 134 (295)
T ss_pred CCCc-EEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEE--e-------------------CCEEEEEEcCc--cEE
Confidence 1111 1235778888888888888777 7889999999876 3 22344544432 237
Q ss_pred EEECEEEEeeeccC
Q 041145 153 YGFELLVMCIGKFG 166 (522)
Q Consensus 153 ~~~d~vViAtG~~s 166 (522)
+++|+||+|+|..|
T Consensus 135 ~~a~~vv~a~G~~s 148 (295)
T TIGR02032 135 VTAKIVIGADGSRS 148 (295)
T ss_pred EEeCEEEECCCcch
Confidence 89999999999873
No 98
>PRK06847 hypothetical protein; Provisional
Probab=99.00 E-value=7.6e-09 Score=105.41 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=82.1
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc----ccCCC----------ccCccc-ccCCCCCccc-------
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG----VWKHC----------SFNSTK-LQTPRCDFEF------- 67 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG----~w~~~----------~~~~~~-~~~~~~~~~~------- 67 (522)
++|+|||||++|+++|..| .|++|+|+|+++.+.. ..... .++.+. ...+...+.+
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 84 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGTL 84 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCCE
Confidence 4899999999999999999 8999999999875321 11100 000000 0000000000
Q ss_pred -CCCCCCC----CC-CCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEE
Q 041145 68 -SDYPWPE----RD-DASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWE 141 (522)
Q Consensus 68 -~~~~~~~----~~-~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (522)
..++.+. .. ......+.++.+++.+.+++.++ .+.++++|++++. + .+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~--~-------------------~~~~~ 141 (375)
T PRK06847 85 LAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQ--D-------------------DDGVT 141 (375)
T ss_pred EEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEE--c-------------------CCEEE
Confidence 0111110 00 01235678888999888888777 7899999999986 3 23466
Q ss_pred EEEEeCCeeEEEEECEEEEeeeccC
Q 041145 142 VAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 142 v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
|++.++. ++.+|.||+|+|.+|
T Consensus 142 v~~~~g~---~~~ad~vI~AdG~~s 163 (375)
T PRK06847 142 VTFSDGT---TGRYDLVVGADGLYS 163 (375)
T ss_pred EEEcCCC---EEEcCEEEECcCCCc
Confidence 7776654 789999999999884
No 99
>PRK06834 hypothetical protein; Provisional
Probab=98.99 E-value=5.9e-09 Score=109.28 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=82.6
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC-------cccCCC--------ccCccccc-CCC--CC----
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG-------GVWKHC--------SFNSTKLQ-TPR--CD---- 64 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G-------G~w~~~--------~~~~~~~~-~~~--~~---- 64 (522)
|...+|+||||||+|+++|..| .|++|+|+|+.+... +.+... .++.+.-. .+. ..
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 3457999999999999999999 899999999976421 122110 00000000 000 00
Q ss_pred -cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEE
Q 041145 65 -FEFSDYPWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVA 143 (522)
Q Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (522)
+.+.+.+..... ........+.+.|.+.+++.++ .++++++|++++. + .+.+.|+
T Consensus 81 ~~~~~~~~~~~~~-~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~--~-------------------~~~v~v~ 136 (488)
T PRK06834 81 RLDISDFPTRHNY-GLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQ--D-------------------DTGVDVE 136 (488)
T ss_pred ecccccCCCCCCc-cccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEE--c-------------------CCeEEEE
Confidence 111111110001 1224566777888888888777 7999999999987 3 2345666
Q ss_pred EEeCCeeEEEEECEEEEeeeccCC
Q 041145 144 VETNQAIQWYGFELLVMCIGKFGD 167 (522)
Q Consensus 144 ~~~~~~~~~~~~d~vViAtG~~s~ 167 (522)
+.++. ++.+|+||.|+|..|.
T Consensus 137 ~~~g~---~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 137 LSDGR---TLRAQYLVGCDGGRSL 157 (488)
T ss_pred ECCCC---EEEeCEEEEecCCCCC
Confidence 64443 7999999999998853
No 100
>PRK08244 hypothetical protein; Provisional
Probab=98.98 E-value=8e-09 Score=109.09 Aligned_cols=133 Identities=19% Similarity=0.159 Sum_probs=81.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc------ccCCC--ccCcccc-------cCCCCCcccCC----
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG------VWKHC--SFNSTKL-------QTPRCDFEFSD---- 69 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG------~w~~~--~~~~~~~-------~~~~~~~~~~~---- 69 (522)
.++|+||||||+|+++|..| .|++|+|+|+.+...- .+... .+..+.+ ..+...+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 46999999999999999999 8999999999865421 01000 0000000 00000011110
Q ss_pred CCCCC---CCC-CCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEE
Q 041145 70 YPWPE---RDD-ASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVE 145 (522)
Q Consensus 70 ~~~~~---~~~-~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (522)
..+.. ... ....++..+.+.|.+.+++.++ .++++++|++++. + .+...|+++
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~--~-------------------~~~v~v~~~ 138 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQ--D-------------------GDGVEVVVR 138 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEE--c-------------------CCeEEEEEE
Confidence 11110 000 1224567788888888887776 7999999999976 3 234556665
Q ss_pred eCCeeEEEEECEEEEeeeccC
Q 041145 146 TNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 146 ~~~~~~~~~~d~vViAtG~~s 166 (522)
+.++.+++++|+||.|+|..|
T Consensus 139 ~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 139 GPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred eCCccEEEEeCEEEECCCCCh
Confidence 433334789999999999884
No 101
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.96 E-value=1.6e-08 Score=107.93 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=87.8
Q ss_pred CcccccccccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC------------------------ccC
Q 041145 1 MASAQNHVQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC------------------------SFN 54 (522)
Q Consensus 1 m~~~~~~~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~------------------------~~~ 54 (522)
|+.+... +..++|+|||||++|+++|..| .|++|+|||+.+.+....+.- ...
T Consensus 1 ~~~~~~~-~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~ 79 (538)
T PRK06183 1 MAAQHPD-AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNH 79 (538)
T ss_pred CCCCCCc-cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCC
Confidence 6555433 2267999999999999999999 899999999997654221110 000
Q ss_pred cccccCCC--CCcccCCCCCCC--CC-CCCCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCcc
Q 041145 55 STKLQTPR--CDFEFSDYPWPE--RD-DASFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAG 128 (522)
Q Consensus 55 ~~~~~~~~--~~~~~~~~~~~~--~~-~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~ 128 (522)
........ ....+.. +... .. ......+.++.++|.+.+.++ ++ .++++++|++++. +
T Consensus 80 ~~~~~~~~g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~--~----------- 143 (538)
T PRK06183 80 GMRFLDAKGRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQ--D----------- 143 (538)
T ss_pred ceEEEcCCCCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEE--c-----------
Confidence 11110000 0111110 1000 01 012345667778887777665 55 7999999999987 3
Q ss_pred ccCCCCCCCCCEEEEEEeCCe-eEEEEECEEEEeeeccC
Q 041145 129 EYGSLLKGHPVWEVAVETNQA-IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~d~vViAtG~~s 166 (522)
.+.+.|++++.++ .+++++|+||.|+|.+|
T Consensus 144 --------~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 144 --------DDGVTVTLTDADGQRETVRARYVVGCDGANS 174 (538)
T ss_pred --------CCeEEEEEEcCCCCEEEEEEEEEEecCCCch
Confidence 2346777764333 45799999999999985
No 102
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.94 E-value=7.1e-09 Score=98.70 Aligned_cols=102 Identities=22% Similarity=0.306 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC-cccCCC-ccCcccccCCC-CCcccCCCCCCCCCCC-CCCChH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG-GVWKHC-SFNSTKLQTPR-CDFEFSDYPWPERDDA-SFPSHV 84 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G-G~w~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 84 (522)
.+||+|||||++|+++|..| .|++|+|+||+..+| |.|... .++.+.++.+. .++.-.+.++...... ...+..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 56999999999999999999 899999999999886 566542 23332222111 1112122333222101 223567
Q ss_pred HHHHHHHHHHHhcCCcCceEeceEEEEEEE
Q 041145 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRH 114 (522)
Q Consensus 85 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~ 114 (522)
++.+.|...+.+++. .+.++++|+++..
T Consensus 101 el~~~L~~~a~e~GV--~I~~~t~V~dli~ 128 (254)
T TIGR00292 101 EFISTLASKALQAGA--KIFNGTSVEDLIT 128 (254)
T ss_pred HHHHHHHHHHHHcCC--EEECCcEEEEEEE
Confidence 888888888888887 7889999999876
No 103
>PRK06184 hypothetical protein; Provisional
Probab=98.93 E-value=1.6e-08 Score=107.05 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=82.0
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc------ccCC----------------C--ccCcccccCCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG------VWKH----------------C--SFNSTKLQTPR 62 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG------~w~~----------------~--~~~~~~~~~~~ 62 (522)
|+..+|+||||||+|+++|..| .|++|+|||+.+.+.. .+.. . .++......+.
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 3456999999999999999999 8999999999876521 1110 0 01111100000
Q ss_pred CCc-c--cCC-C-CCC--CCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCC
Q 041145 63 CDF-E--FSD-Y-PWP--ERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLK 135 (522)
Q Consensus 63 ~~~-~--~~~-~-~~~--~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (522)
... . +.. . +.+ ........++..+.+.|.+.+.+.++ .++++++|++++. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~--~------------------ 138 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQ--D------------------ 138 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEE--c------------------
Confidence 000 0 000 0 000 00001123456667777777777776 7999999999987 3
Q ss_pred CCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 136 GHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.+++++.+.++.+++++|+||.|+|..|
T Consensus 139 -~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 139 -ADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred -CCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 234566664333335799999999999985
No 104
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.91 E-value=1.4e-08 Score=103.75 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=79.0
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccC-CCC---CcccCCCccC--------------cccccCCCCCcccCCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEAT-NSI---GGVWKHCSFN--------------STKLQTPRCDFEFSDYP 71 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~-~~~---GG~w~~~~~~--------------~~~~~~~~~~~~~~~~~ 71 (522)
+||+||||||||+++|+.| .|++|+|+|+. +.. ||........ +..+.++...... ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIK--VT 78 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceee--ec
Confidence 4899999999999999999 89999999997 221 2211111111 1111111110000 11
Q ss_pred CCCCCCCC--CCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeC--
Q 041145 72 WPERDDAS--FPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETN-- 147 (522)
Q Consensus 72 ~~~~~~~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 147 (522)
.+... .. ...+..+.++|.+.+.+.+. .+. .++|+++.. + .+.+.|++.++
T Consensus 79 ~~~~~-~~~~~~~r~~fd~~L~~~a~~~G~--~v~-~~~v~~v~~--~-------------------~~~~~v~~~~~~~ 133 (388)
T TIGR02023 79 IPSED-GYVGMVRREVFDSYLRERAQKAGA--ELI-HGLFLKLER--D-------------------RDGVTLTYRTPKK 133 (388)
T ss_pred cCCCC-CceEeeeHHHHHHHHHHHHHhCCC--EEE-eeEEEEEEE--c-------------------CCeEEEEEEeccc
Confidence 11111 11 26788899999888888887 454 456888866 3 34567777641
Q ss_pred --Ce-eEEEEECEEEEeeeccC
Q 041145 148 --QA-IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 148 --~~-~~~~~~d~vViAtG~~s 166 (522)
.+ ..++.+|.||.|+|..|
T Consensus 134 ~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 134 GAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred cCCCcceEEEeCEEEECCCCCc
Confidence 11 34799999999999874
No 105
>PRK08013 oxidoreductase; Provisional
Probab=98.90 E-value=1.1e-08 Score=105.02 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=79.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC---c----------------------ccCC------CccCccc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG---G----------------------VWKH------CSFNSTK 57 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G---G----------------------~w~~------~~~~~~~ 57 (522)
.+||+|||||++|+++|..| .|++|+|+|+.+... | .|.. ..+.++.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 56999999999999999999 899999999987532 1 1110 0000000
Q ss_pred ccCCC--CCcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCC
Q 041145 58 LQTPR--CDFEFSDYPWPERDDASFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLL 134 (522)
Q Consensus 58 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
+..+. ....|...............+..+.+.|.+-+... ++ .+.++++|++++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~--~----------------- 141 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDI--TLLAPAELQQVAW--G----------------- 141 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEe--c-----------------
Confidence 00000 00111100000000001245667777777766664 45 6888999999976 3
Q ss_pred CCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 135 KGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.....|++.+++ ++.+|.||.|.|.+|
T Consensus 142 --~~~v~v~~~~g~---~i~a~lvVgADG~~S 168 (400)
T PRK08013 142 --ENEAFLTLKDGS---MLTARLVVGADGANS 168 (400)
T ss_pred --CCeEEEEEcCCC---EEEeeEEEEeCCCCc
Confidence 224566666654 799999999999885
No 106
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=5.3e-09 Score=95.96 Aligned_cols=121 Identities=23% Similarity=0.456 Sum_probs=79.6
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCC----------------------------C
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTP----------------------------R 62 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~----------------------------~ 62 (522)
+|+|||+|++|++||..| .|++|+||||...+||.-...+.++...+.- .
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 699999999999999999 8999999999999998665444433332211 2
Q ss_pred CCcccCCCCCCC-CCCCCC---CChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCC
Q 041145 63 CDFEFSDYPWPE-RDDASF---PSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHP 138 (522)
Q Consensus 63 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (522)
..++|.+-..++ ..+..| +.-..+.+|+. . ++ .|.++++|+.+.+ . ++
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA---t--dL--~V~~~~rVt~v~~--~-------------------~~ 134 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA---T--DL--TVVLETRVTEVAR--T-------------------DN 134 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHh---c--cc--hhhhhhhhhhhee--c-------------------CC
Confidence 223333221111 110113 23333444332 2 34 6889999999987 2 46
Q ss_pred CEEEEEEeCCeeEEEEECEEEEeee
Q 041145 139 VWEVAVETNQAIQWYGFELLVMCIG 163 (522)
Q Consensus 139 ~~~v~~~~~~~~~~~~~d~vViAtG 163 (522)
.|+|.++++. ....||.||||.-
T Consensus 135 ~W~l~~~~g~--~~~~~d~vvla~P 157 (331)
T COG3380 135 DWTLHTDDGT--RHTQFDDVVLAIP 157 (331)
T ss_pred eeEEEecCCC--cccccceEEEecC
Confidence 8999996654 3788999999965
No 107
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.89 E-value=1.2e-08 Score=104.50 Aligned_cols=132 Identities=16% Similarity=0.179 Sum_probs=79.7
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC------------------cccCCC-----ccCcccccCCCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG------------------GVWKHC-----SFNSTKLQTPRC 63 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G------------------G~w~~~-----~~~~~~~~~~~~ 63 (522)
|+.+||+|||||++|+++|..| .|++|+|||+.+..+ |.|..- .+..+.+..+..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 4456999999999999999999 899999999986542 111100 000111100000
Q ss_pred -C-----cccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCC
Q 041145 64 -D-----FEFSDYPWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGH 137 (522)
Q Consensus 64 -~-----~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (522)
. ..|..............++..+.+.+.+.+.+++. ..+++++|++++. + .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~--~~~~~~~v~~i~~--~-------------------~ 141 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPN--ITRFGDEAESVRP--R-------------------E 141 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCC--cEEECCeeEEEEE--c-------------------C
Confidence 0 00100000000001124566777777776766643 2378999999976 3 3
Q ss_pred CCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 138 PVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
+.|.|+++++. ++.+|.||.|+|..|
T Consensus 142 ~~~~v~~~~g~---~~~a~~vI~AdG~~S 167 (388)
T PRK07494 142 DEVTVTLADGT---TLSARLVVGADGRNS 167 (388)
T ss_pred CeEEEEECCCC---EEEEeEEEEecCCCc
Confidence 45777776653 799999999999874
No 108
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.89 E-value=1.2e-08 Score=105.55 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=77.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC----c----ccCCC--ccCcccc-------cCCCC--------
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG----G----VWKHC--SFNSTKL-------QTPRC-------- 63 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G----G----~w~~~--~~~~~~~-------~~~~~-------- 63 (522)
.+||+|||||++|+++|..| .|++|+|||+.+... | .+... ....+.+ ..+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 46999999999999999999 899999999987542 1 11100 0000000 00100
Q ss_pred ---CcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCC
Q 041145 64 ---DFEFSDYPWPERDDASFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPV 139 (522)
Q Consensus 64 ---~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (522)
...|...............+..+.+.|.+.+.+. ++ .++++++|++++. + .+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~v~~--~-------------------~~~ 154 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNI--TWLCPAEVVSVEY--Q-------------------QDA 154 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCc--EEEcCCeeEEEEe--c-------------------CCe
Confidence 0111100000000001122345666666656554 34 6788999999976 3 234
Q ss_pred EEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 140 WEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 140 ~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
+.|+++++++..++++|.||.|+|.+|
T Consensus 155 ~~v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 155 ATVTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred eEEEEccCCcceEEeeeEEEEeCCCCc
Confidence 667776433334799999999999885
No 109
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.88 E-value=1.4e-08 Score=96.99 Aligned_cols=135 Identities=23% Similarity=0.221 Sum_probs=83.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc-ccCCC-ccCcccccCC-CCCcccCCCCCCCCCCC-CCCChH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG-VWKHC-SFNSTKLQTP-RCDFEFSDYPWPERDDA-SFPSHV 84 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG-~w~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 84 (522)
.+||+|||||+||++||..| .|++|+|+|+...+|| .|... .++...++.+ ...+.-.+.++...... ...++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 46999999999999999999 8999999999988875 45431 1222211111 00111112222221101 224567
Q ss_pred HHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEE------eC--CeeEEEEEC
Q 041145 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVE------TN--QAIQWYGFE 156 (522)
Q Consensus 85 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~--~~~~~~~~d 156 (522)
++...|...+.+.+. .+.++++|+++....+ ....-+.+. .+ .+..++.++
T Consensus 105 ~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~~~~-------------------g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak 163 (257)
T PRK04176 105 EAAAKLAAAAIDAGA--KIFNGVSVEDVILRED-------------------PRVAGVVINWTPVEMAGLHVDPLTIEAK 163 (257)
T ss_pred HHHHHHHHHHHHcCC--EEEcCceeceeeEeCC-------------------CcEEEEEEccccccccCCCCCcEEEEcC
Confidence 777888888888887 7888999999876221 011112211 11 013479999
Q ss_pred EEEEeeeccC
Q 041145 157 LLVMCIGKFG 166 (522)
Q Consensus 157 ~vViAtG~~s 166 (522)
.||+|||+.+
T Consensus 164 ~VI~ATG~~a 173 (257)
T PRK04176 164 AVVDATGHDA 173 (257)
T ss_pred EEEEEeCCCc
Confidence 9999999874
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.88 E-value=2e-08 Score=102.86 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=80.5
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCcc----Ccccc-----cCCCCCcccC--CCCCCCCCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSF----NSTKL-----QTPRCDFEFS--DYPWPERDDAS 79 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~----~~~~~-----~~~~~~~~~~--~~~~~~~~~~~ 79 (522)
||+|||||+||+++|..| .|++|+|+|+++.+|+.+..+.+ +.+.+ +.....+.+. ...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 699999999999999999 79999999999888764322111 11110 1011111111 11100000011
Q ss_pred CCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEE
Q 041145 80 FPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLV 159 (522)
Q Consensus 80 ~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vV 159 (522)
...+..+.+++.+.+.+.++ .+ +.++|+.+.. +. .+.|.|++.++. ++.+|.||
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv--~~-~~~~v~~i~~--~~------------------~~~~~v~~~~g~---~~~a~~VI 134 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGV--LW-LERKAIHAEA--DG------------------VALSTVYCAGGQ---RIQARLVI 134 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCc--EE-EccEEEEEEe--cC------------------CceeEEEeCCCC---EEEeCEEE
Confidence 25678888888888877765 34 4668888765 21 345777776653 79999999
Q ss_pred Eeeecc
Q 041145 160 MCIGKF 165 (522)
Q Consensus 160 iAtG~~ 165 (522)
.|+|..
T Consensus 135 ~A~G~~ 140 (388)
T TIGR01790 135 DARGFG 140 (388)
T ss_pred ECCCCc
Confidence 999977
No 111
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.87 E-value=4.1e-08 Score=104.99 Aligned_cols=133 Identities=15% Similarity=0.205 Sum_probs=81.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC--------------ccCcc-----c------ccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC--------------SFNST-----K------LQTPRC 63 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~--------------~~~~~-----~------~~~~~~ 63 (522)
..+|+|||||++|+++|..| .|++|+|||+.+.+....+.. ....+ . ......
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 46999999999999999999 899999999997653221100 00000 0 000011
Q ss_pred CcccCCCCCCCCCCC--CCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCE
Q 041145 64 DFEFSDYPWPERDDA--SFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVW 140 (522)
Q Consensus 64 ~~~~~~~~~~~~~~~--~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (522)
...+...+......+ ...++..+..+|.+.++++ ++ .++++++|++++. + .+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v--~v~~~~~v~~i~~--~-------------------~~~v 159 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNI--DLRWKNKVTGLEQ--H-------------------DDGV 159 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCc--EEEeCCEEEEEEE--c-------------------CCEE
Confidence 111111110000001 1145667778888777765 34 6899999999987 3 2346
Q ss_pred EEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 141 EVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 141 ~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+++++.++.+++.+|+||.|+|.+|
T Consensus 160 ~v~~~~~~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 160 TLTVETPDGPYTLEADWVIACDGARS 185 (547)
T ss_pred EEEEECCCCcEEEEeCEEEECCCCCc
Confidence 66665433334689999999999885
No 112
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.86 E-value=2.1e-08 Score=102.73 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=79.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC----c-------ccCC--------CccCcccc--cCCCC----
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG----G-------VWKH--------CSFNSTKL--QTPRC---- 63 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G----G-------~w~~--------~~~~~~~~--~~~~~---- 63 (522)
..||+|||||++|+++|..| .|++|+|+|+.+... + .+.. ..++.+.- ..+..
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 45999999999999999999 899999999976431 1 0000 00000000 00000
Q ss_pred -------CcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCC
Q 041145 64 -------DFEFSDYPWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKG 136 (522)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (522)
...|..............++..+.+.|.+.+++.++ .+.++++|++++. +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~--~------------------- 142 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQ--D------------------- 142 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEe--c-------------------
Confidence 011110000000001123456777777777777777 7888999999986 3
Q ss_pred CCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 137 HPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 137 ~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.+.|++.+++ ++.+|.||.|+|..|
T Consensus 143 ~~~v~v~~~~g~---~~~a~~vV~AdG~~S 169 (392)
T PRK08773 143 ADRVRLRLDDGR---RLEAALAIAADGAAS 169 (392)
T ss_pred CCeEEEEECCCC---EEEeCEEEEecCCCc
Confidence 235667765554 789999999999874
No 113
>PRK06753 hypothetical protein; Provisional
Probab=98.85 E-value=2.6e-08 Score=101.44 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=78.0
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC-----Cc---------cCccc-ccCCCCCccc--------
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH-----CS---------FNSTK-LQTPRCDFEF-------- 67 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~-----~~---------~~~~~-~~~~~~~~~~-------- 67 (522)
+|+|||||++|+++|..| .|++|+|+|+++.+.-.... +. .+.+. .-.+...+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 799999999999999999 89999999998765311000 00 00000 0001011111
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeC
Q 041145 68 SDYPWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETN 147 (522)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (522)
...++.........++..+.+.|.+.++. . .++++++|++++. + ++.+.|+++++
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~--~-------------------~~~v~v~~~~g 136 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIEN--E-------------------TDKVTIHFADG 136 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEe--c-------------------CCcEEEEECCC
Confidence 11111111101235677777777666543 2 5889999999986 3 34577777666
Q ss_pred CeeEEEEECEEEEeeeccC
Q 041145 148 QAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 148 ~~~~~~~~d~vViAtG~~s 166 (522)
+ ++.+|.||.|.|.+|
T Consensus 137 ~---~~~~~~vigadG~~S 152 (373)
T PRK06753 137 E---SEAFDLCIGADGIHS 152 (373)
T ss_pred C---EEecCEEEECCCcch
Confidence 4 789999999999884
No 114
>PRK09126 hypothetical protein; Provisional
Probab=98.82 E-value=3.8e-08 Score=100.90 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=31.8
Q ss_pred cccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 8 VQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 8 ~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
|| .++|+|||||++|+++|..| .|++|+|+|+.+.
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 45 57999999999999999999 8999999999865
No 115
>PLN02463 lycopene beta cyclase
Probab=98.82 E-value=3.8e-08 Score=101.49 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=80.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC-----CcccCCCccCcccc------cCCCCCcccCCC-CCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI-----GGVWKHCSFNSTKL------QTPRCDFEFSDY-PWPERD 76 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~ 76 (522)
.+||+|||||+||+++|..| .|++|+|+|+.+.. .|.|.. .+..+.+ ..+.....+.+. ......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~-~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD-EFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH-HHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 46999999999999999999 79999999997542 234432 1110100 011111111110 000000
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEEC
Q 041145 77 DASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFE 156 (522)
Q Consensus 77 ~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d 156 (522)
.-....+.++.+++.+.+...++ .+ ..++|++++. + ++.+.|+++++. ++.+|
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV--~~-~~~~V~~I~~--~-------------------~~~~~V~~~dG~---~i~A~ 159 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGV--QF-HQAKVKKVVH--E-------------------ESKSLVVCDDGV---KIQAS 159 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCC--EE-EeeEEEEEEE--c-------------------CCeEEEEECCCC---EEEcC
Confidence 01224778888888887777776 34 3578888876 3 245678777664 79999
Q ss_pred EEEEeeeccC
Q 041145 157 LLVMCIGKFG 166 (522)
Q Consensus 157 ~vViAtG~~s 166 (522)
.||.|+|..|
T Consensus 160 lVI~AdG~~s 169 (447)
T PLN02463 160 LVLDATGFSR 169 (447)
T ss_pred EEEECcCCCc
Confidence 9999999873
No 116
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.81 E-value=3.4e-08 Score=101.67 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=77.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC-------------CcccCCC---------ccCcccc--cCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI-------------GGVWKHC---------SFNSTKL--QTPRCD 64 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~-------------GG~w~~~---------~~~~~~~--~~~~~~ 64 (522)
.+||+|||||++|+++|..| .|++|+|||+.+.. ++....+ .++.+.- ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 46999999999999999999 89999999997621 1000000 0011100 001011
Q ss_pred cccC--------CCCCCC-CCC--CCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCC
Q 041145 65 FEFS--------DYPWPE-RDD--ASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSL 133 (522)
Q Consensus 65 ~~~~--------~~~~~~-~~~--~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 133 (522)
+.+. ++.... ... ....++..+.+.|.+.+++.++ .++++++|++++. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~--~---------------- 141 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDI--GLLANARLEQMRR--S---------------- 141 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCC--EEEcCCEEEEEEE--c----------------
Confidence 1110 010000 000 1123445566666555665565 6888999999986 3
Q ss_pred CCCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 134 LKGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.|.|++.++. ++.+|.||.|+|.+|
T Consensus 142 ---~~~v~v~~~~g~---~~~a~~vVgAdG~~S 168 (405)
T PRK05714 142 ---GDDWLLTLADGR---QLRAPLVVAADGANS 168 (405)
T ss_pred ---CCeEEEEECCCC---EEEeCEEEEecCCCc
Confidence 235777776654 799999999999884
No 117
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.80 E-value=3.5e-08 Score=101.10 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=83.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC-C-cc--------Cccc----ccCCCCCcccCCCC--C
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH-C-SF--------NSTK----LQTPRCDFEFSDYP--W 72 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~-~-~~--------~~~~----~~~~~~~~~~~~~~--~ 72 (522)
.+||+||||||||++||+.| .|++|+|+|+...+|.--.. . .+ +... -.+....+.+..-. +
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 57999999999999999999 88999999999888742111 0 00 1110 00000111111000 0
Q ss_pred CCC-CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeE
Q 041145 73 PER-DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQ 151 (522)
Q Consensus 73 ~~~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (522)
... .......+..+-++|...+++.|. .+..+++|..+.. + ++...+.+..++ .
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~--~ 137 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIR--E-------------------DDGVVVGVRAGD--D 137 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEE--e-------------------CCcEEEEEEcCC--E
Confidence 000 001224577888889999999888 7899999999987 3 223444444443 4
Q ss_pred EEEECEEEEeeeccC
Q 041145 152 WYGFELLVMCIGKFG 166 (522)
Q Consensus 152 ~~~~d~vViAtG~~s 166 (522)
++.+++||.|+|..|
T Consensus 138 e~~a~~vI~AdG~~s 152 (396)
T COG0644 138 EVRAKVVIDADGVNS 152 (396)
T ss_pred EEEcCEEEECCCcch
Confidence 799999999999763
No 118
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.79 E-value=4.9e-08 Score=99.75 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.4
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
|+.+||+|||||++|+++|..| .|++|+|||+.+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3346999999999999999999 899999999874
No 119
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.78 E-value=6.1e-08 Score=100.18 Aligned_cols=129 Identities=16% Similarity=0.081 Sum_probs=79.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc------cCCC----ccCcccccCCC------CCcccC----
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV------WKHC----SFNSTKLQTPR------CDFEFS---- 68 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~------w~~~----~~~~~~~~~~~------~~~~~~---- 68 (522)
++||+|||||+||++||..| .|++|+|+||.+.+|.. .... .+|.+....+- ..+.+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 46999999999999999999 89999999998766531 1110 11111100110 001110
Q ss_pred ----CCC---CCC-CCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCE
Q 041145 69 ----DYP---WPE-RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVW 140 (522)
Q Consensus 69 ----~~~---~~~-~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (522)
+++ ... ........+.++.++|.+.+++.+. .+..+++|+++.. + .+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~--~-------------------~g~v 141 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQ--R-------------------DGKV 141 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEE--e-------------------CCEE
Confidence 011 000 0001224677888888888888887 7888999999876 2 2233
Q ss_pred EEEEEeCCeeEEEEECEEEEeeecc
Q 041145 141 EVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 141 ~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
.+...+++ ++.+|.||+|+|..
T Consensus 142 ~~v~~~g~---~i~A~~VI~A~G~~ 163 (428)
T PRK10157 142 VGVEADGD---VIEAKTVILADGVN 163 (428)
T ss_pred EEEEcCCc---EEECCEEEEEeCCC
Confidence 22222332 68999999999976
No 120
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2.6e-08 Score=88.84 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=83.5
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC-cccCCC-ccCcccccCCCCCc-ccCCCCCCCCCCCCC-CChHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG-GVWKHC-SFNSTKLQTPRCDF-EFSDYPWPERDDASF-PSHVE 85 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G-G~w~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 85 (522)
.||+|+|||||||+||+.| .|++|+|||++-.+| |.|... .++.+.++.|...+ .--..|+.+.....+ .+..+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 4999999999999999999 899999999998886 688753 45556555554321 111223333221122 34555
Q ss_pred HHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCccc-ccCCccccCCCCCCCCCEEEEEEeCC--eeEEEEECEEEEee
Q 041145 86 LLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTAR-VSDTAGEYGSLLKGHPVWEVAVETNQ--AIQWYGFELLVMCI 162 (522)
Q Consensus 86 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~d~vViAt 162 (522)
+..-+..-+-+.+. .|.-.+.|+++-...+....+ +- .|+.....+- +.-++++++||-||
T Consensus 111 ~~skl~~~a~~aGa--ki~n~~~veDvi~r~~~rVaGvVv--------------NWt~V~~~~lhvDPl~i~a~~VvDaT 174 (262)
T COG1635 111 FASKLAARALDAGA--KIFNGVSVEDVIVRDDPRVAGVVV--------------NWTPVQMAGLHVDPLTIRAKAVVDAT 174 (262)
T ss_pred HHHHHHHHHHhcCc--eeeecceEEEEEEecCCceEEEEE--------------ecchhhhcccccCcceeeEEEEEeCC
Confidence 66666555555665 676677888876533211111 11 1221111110 02378999999999
Q ss_pred ecc
Q 041145 163 GKF 165 (522)
Q Consensus 163 G~~ 165 (522)
|+-
T Consensus 175 GHd 177 (262)
T COG1635 175 GHD 177 (262)
T ss_pred CCc
Confidence 975
No 121
>PRK06185 hypothetical protein; Provisional
Probab=98.78 E-value=6.1e-08 Score=99.88 Aligned_cols=133 Identities=18% Similarity=0.241 Sum_probs=78.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC-----CcccCCC---------ccC-----------cccccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI-----GGVWKHC---------SFN-----------STKLQTPRC 63 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~-----GG~w~~~---------~~~-----------~~~~~~~~~ 63 (522)
.+||+|||||++|+++|..| .|++|+|+|+.+.. |..+... ..+ .+.+.....
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 46999999999999999999 89999999997543 2111110 000 000000000
Q ss_pred ---CcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCC
Q 041145 64 ---DFEFSDYPWPERDDASFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPV 139 (522)
Q Consensus 64 ---~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (522)
...|...+.+... ..+.+...+.+++...+.+. ++ .+.++++|+++.. ++ +..
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~--~~------------------~~v 142 (407)
T PRK06185 86 TVTLADFSRLPTPYPY-IAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIE--EG------------------GRV 142 (407)
T ss_pred EEEecchhhcCCCCCc-EEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEE--eC------------------CEE
Confidence 0111111111101 12356677888887777664 45 6888999999976 31 111
Q ss_pred EEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 140 WEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 140 ~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
..|++...++..++.+|.||.|+|.+|
T Consensus 143 ~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 143 TGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred EEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 224444322234789999999999884
No 122
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.78 E-value=4.2e-08 Score=100.26 Aligned_cols=128 Identities=21% Similarity=0.209 Sum_probs=78.6
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc--------ccC-C-C---------ccCccc--ccCCCCCccc-C
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG--------VWK-H-C---------SFNSTK--LQTPRCDFEF-S 68 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG--------~w~-~-~---------~~~~~~--~~~~~~~~~~-~ 68 (522)
||+|||||++|+++|..| .|++|+|||+.+.++- ... . + ..+.+. ...+...+.+ .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 699999999999999999 8999999999976421 000 0 0 000000 0000000000 0
Q ss_pred C-------CCCCCCCC---CCCCChHHHHHHHHHHHHhcC-CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCC
Q 041145 69 D-------YPWPERDD---ASFPSHVELLDYLHGYAVHFD-VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGH 137 (522)
Q Consensus 69 ~-------~~~~~~~~---~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (522)
. ++...... ....++.++.+.|.+.+.+.+ . .++++++|++++. + .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~--~-------------------~ 137 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPR--H-------------------S 137 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEe--c-------------------C
Confidence 0 11110000 112456677777777777665 5 6889999999976 3 3
Q ss_pred CCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 138 PVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
+.+.|+++++. ++.+|.||.|+|..|
T Consensus 138 ~~~~v~~~~g~---~~~~~~vi~adG~~S 163 (385)
T TIGR01988 138 DHVELTLDDGQ---QLRARLLVGADGANS 163 (385)
T ss_pred CeeEEEECCCC---EEEeeEEEEeCCCCC
Confidence 45667766654 689999999999884
No 123
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.78 E-value=3.9e-08 Score=100.97 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=79.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc------ccCCC--------ccCccc-ccCCCCCcccCC----
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG------VWKHC--------SFNSTK-LQTPRCDFEFSD---- 69 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG------~w~~~--------~~~~~~-~~~~~~~~~~~~---- 69 (522)
..+|+|||||++|+++|..| .|++|+|||+.+.++. .+.+. ..+.+. ...+...+.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 35899999999999999999 8999999999876541 11100 000000 000011111110
Q ss_pred -----CCCCC----CCC-C-CCCChHHHHHHHHHHHHhcC-CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCC
Q 041145 70 -----YPWPE----RDD-A-SFPSHVELLDYLHGYAVHFD-VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGH 137 (522)
Q Consensus 70 -----~~~~~----~~~-~-~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (522)
.+... ... + ....+.++.+.|.+.+.+.+ + .++++++|++++. + .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v--~~~~~~~v~~i~~--~-------------------~ 140 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLV--EFRTSTHVVGIEQ--D-------------------G 140 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCc--EEEeCCEEEEEec--C-------------------C
Confidence 01110 000 1 12466777777777666554 4 6788999999876 3 2
Q ss_pred CCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 138 PVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
+.+.|++.++. ++.+|.||.|+|..|
T Consensus 141 ~~v~v~~~~g~---~~~ad~vV~AdG~~S 166 (396)
T PRK08163 141 DGVTVFDQQGN---RWTGDALIGCDGVKS 166 (396)
T ss_pred CceEEEEcCCC---EEecCEEEECCCcCh
Confidence 34667665553 789999999999884
No 124
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.77 E-value=9.4e-08 Score=97.89 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=78.4
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC----cc--------------CcccccCCCCC-cccCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC----SF--------------NSTKLQTPRCD-FEFSDYP 71 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~----~~--------------~~~~~~~~~~~-~~~~~~~ 71 (522)
||+||||||+|++||..| .|++|+|+|+....+..|... .. .+..+..|... ..+. ..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~-~~ 80 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIG-RT 80 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEec-cC
Confidence 899999999999999999 899999999986544332210 00 01111111110 0000 00
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC---
Q 041145 72 WPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ--- 148 (522)
Q Consensus 72 ~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 148 (522)
.+....-...++..+.++|...+.+.|. .+... +++++....+ . .+.+.|++...+
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~-~~~~i~~~~~-~-----------------~~~~~v~~~~~~~~~ 139 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGA--TLING-LVTKLSLPAD-A-----------------DDPYTLHYISSDSGG 139 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcc-eEEEEEeccC-C-----------------CceEEEEEeeccccc
Confidence 1110000126788888999998988887 56545 4666653111 1 345667653221
Q ss_pred --e-eEEEEECEEEEeeeccC
Q 041145 149 --A-IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 149 --~-~~~~~~d~vViAtG~~s 166 (522)
+ ..++.+|.||.|+|..|
T Consensus 140 ~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 140 PSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred cCCCccEEEeCEEEECCCcch
Confidence 1 34789999999999874
No 125
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.77 E-value=4.9e-08 Score=100.48 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=30.3
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
|..+||+|||||++|+++|..| .|++|+|+|+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4457999999999999999999 89999999986
No 126
>PRK07190 hypothetical protein; Provisional
Probab=98.77 E-value=9e-08 Score=100.34 Aligned_cols=130 Identities=13% Similarity=0.019 Sum_probs=79.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCC-ccCc-------cc-----------ccC-----CCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHC-SFNS-------TK-----------LQT-----PRCD 64 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~-~~~~-------~~-----------~~~-----~~~~ 64 (522)
..+|+||||||+||++|..| .|++|+|+|+.+.....-+.. ..+. +. +.. ....
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 35999999999999999999 899999999987653111100 0000 00 000 0000
Q ss_pred ccc--CCCC-CCCCCC--CCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCC
Q 041145 65 FEF--SDYP-WPERDD--ASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPV 139 (522)
Q Consensus 65 ~~~--~~~~-~~~~~~--~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (522)
+.. ..+. .+.... ....+...+...|.+.+++.++ .+.++++|++++. + .+.
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv--~v~~~~~v~~l~~--~-------------------~~~ 141 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGA--AVKRNTSVVNIEL--N-------------------QAG 141 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEE--c-------------------CCe
Confidence 000 0000 000000 1123456677778777777787 7999999999987 3 223
Q ss_pred EEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 140 WEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 140 ~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
+.+++.+++ ++.+++||.|+|..|
T Consensus 142 v~v~~~~g~---~v~a~~vVgADG~~S 165 (487)
T PRK07190 142 CLTTLSNGE---RIQSRYVIGADGSRS 165 (487)
T ss_pred eEEEECCCc---EEEeCEEEECCCCCH
Confidence 455554443 799999999999885
No 127
>PRK07045 putative monooxygenase; Reviewed
Probab=98.77 E-value=9.6e-08 Score=97.76 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=78.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC----Cc--ccCCC--c------cCccccc--CCCCCcc-cCC--
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI----GG--VWKHC--S------FNSTKLQ--TPRCDFE-FSD-- 69 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~----GG--~w~~~--~------~~~~~~~--~~~~~~~-~~~-- 69 (522)
+++|+|||||++|+++|..| .|++|+|+|+.+.. |+ .+... . .+.+.-. .+...+. +.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 35899999999999999999 89999999998764 21 11110 0 0000000 0000011 110
Q ss_pred ----CCCCCCCC-C--CCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEE
Q 041145 70 ----YPWPERDD-A--SFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWE 141 (522)
Q Consensus 70 ----~~~~~~~~-~--~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (522)
+++..... . ...++.++.+.|.+.++.. ++ .++++++|++++. +++ ...+.
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~--~~~-----------------~~~~~ 143 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIER--DAD-----------------GTVTS 143 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEE--CCC-----------------CcEEE
Confidence 11111100 1 1235666777666655433 34 6899999999987 321 22345
Q ss_pred EEEEeCCeeEEEEECEEEEeeeccC
Q 041145 142 VAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 142 v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
|++.+++ ++.+|.||.|+|.+|
T Consensus 144 v~~~~g~---~~~~~~vIgADG~~S 165 (388)
T PRK07045 144 VTLSDGE---RVAPTVLVGADGARS 165 (388)
T ss_pred EEeCCCC---EEECCEEEECCCCCh
Confidence 6665554 789999999999885
No 128
>PRK06126 hypothetical protein; Provisional
Probab=98.76 E-value=1.7e-07 Score=100.23 Aligned_cols=133 Identities=20% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC----C-C---ccCcccc-------cCC------------
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK----H-C---SFNSTKL-------QTP------------ 61 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~----~-~---~~~~~~~-------~~~------------ 61 (522)
..+|+|||||++|+++|..| .|++|+|||+.+...-.-. . + .+..+.+ -.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 46999999999999999999 8999999999865321100 0 0 0000000 000
Q ss_pred ---CCCccc--CCCC----C--------CCCCCCCCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccc
Q 041145 62 ---RCDFEF--SDYP----W--------PERDDASFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARV 123 (522)
Q Consensus 62 ---~~~~~~--~~~~----~--------~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~ 123 (522)
.....+ .... . .........++..+...|.+.+++. ++ .++++++|++++. +
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v--~i~~~~~v~~i~~--~------ 156 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV--TLRYGHRLTDFEQ--D------ 156 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc--eEEeccEEEEEEE--C------
Confidence 000000 0000 0 0000012245566777777777654 45 7999999999987 3
Q ss_pred cCCccccCCCCCCCCCEEEEEEeC-Ce-eEEEEECEEEEeeeccC
Q 041145 124 SDTAGEYGSLLKGHPVWEVAVETN-QA-IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~v~~~~~-~~-~~~~~~d~vViAtG~~s 166 (522)
.+...+++.+. ++ ..++.+|+||.|+|.+|
T Consensus 157 -------------~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 157 -------------ADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred -------------CCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 23455666552 22 45789999999999985
No 129
>PRK11445 putative oxidoreductase; Provisional
Probab=98.76 E-value=1.1e-07 Score=95.71 Aligned_cols=130 Identities=20% Similarity=0.216 Sum_probs=76.5
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC---------CcccCCCc---cCcccccCCCCC------cccC--C
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI---------GGVWKHCS---FNSTKLQTPRCD------FEFS--D 69 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~---------GG~w~~~~---~~~~~~~~~~~~------~~~~--~ 69 (522)
+||+||||||||+++|..| . ++|+|+|+.+.. ||....+. ...+.+..+... +... +
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 4899999999999999999 6 999999998743 22111100 000111101000 0000 0
Q ss_pred CC--CCCCCCCC--CCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEE
Q 041145 70 YP--WPERDDAS--FPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVE 145 (522)
Q Consensus 70 ~~--~~~~~~~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (522)
+. ........ ..++.++...+.+.+ ..++ .+++++.|+.++. + ++.|.|++.
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~--~-------------------~~~~~v~~~ 136 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWR--E-------------------DDGYHVIFR 136 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEE--c-------------------CCEEEEEEe
Confidence 00 00000011 256777777776643 3444 6888999999876 3 345777764
Q ss_pred eCCeeEEEEECEEEEeeeccC
Q 041145 146 TNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 146 ~~~~~~~~~~d~vViAtG~~s 166 (522)
+++...++.+|.||.|+|..|
T Consensus 137 ~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 137 ADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cCCcEEEEEeCEEEECCCCCc
Confidence 332234689999999999884
No 130
>PRK07236 hypothetical protein; Provisional
Probab=98.76 E-value=4.8e-08 Score=99.85 Aligned_cols=128 Identities=18% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC----C-cc--cCC--CccCccccc------CCCCCcccC---CC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI----G-GV--WKH--CSFNSTKLQ------TPRCDFEFS---DY 70 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~----G-G~--w~~--~~~~~~~~~------~~~~~~~~~---~~ 70 (522)
..+|+|||||++|+++|..| .|++|+|||+.+.. | |. +.. ..+..+.+. .+.....+. +.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 57999999999999999999 89999999998642 1 11 100 000001010 010001110 00
Q ss_pred CCCCC-CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe
Q 041145 71 PWPER-DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA 149 (522)
Q Consensus 71 ~~~~~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (522)
..... ..........+...|. +.+.. ..++++++|++++. + .+.++|+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~---~~~~~-~~i~~~~~v~~i~~--~-------------------~~~v~v~~~~g~- 139 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALR---AAFPA-ERYHLGETLVGFEQ--D-------------------GDRVTARFADGR- 139 (386)
T ss_pred EeeccCCCccccCHHHHHHHHH---HhCCC-cEEEcCCEEEEEEe--c-------------------CCeEEEEECCCC-
Confidence 00000 0011123334444333 33321 25889999999986 3 235677777664
Q ss_pred eEEEEECEEEEeeeccC
Q 041145 150 IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 150 ~~~~~~d~vViAtG~~s 166 (522)
++.+|.||.|.|.+|
T Consensus 140 --~~~ad~vIgADG~~S 154 (386)
T PRK07236 140 --RETADLLVGADGGRS 154 (386)
T ss_pred --EEEeCEEEECCCCCc
Confidence 789999999999985
No 131
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.76 E-value=2e-08 Score=101.19 Aligned_cols=132 Identities=23% Similarity=0.203 Sum_probs=79.2
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC-----Cc---cCcccc-------cCCCCCc---------
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH-----CS---FNSTKL-------QTPRCDF--------- 65 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~-----~~---~~~~~~-------~~~~~~~--------- 65 (522)
++|+|||||++|+++|..| .|++|+|||+++........ +. +..+.+ ..+....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 4899999999999999999 89999999998765211110 00 000000 0000000
Q ss_pred ----------ccCCCCCCCC-CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCC
Q 041145 66 ----------EFSDYPWPER-DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLL 134 (522)
Q Consensus 66 ----------~~~~~~~~~~-~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
...++..... .......+.++.+.|.+.+++.++ .+.++++|+++.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~--d----------------- 140 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQ--D----------------- 140 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEE--E-----------------
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccc--c-----------------
Confidence 0000000000 001234678899999999988886 7999999999887 3
Q ss_pred CCCCCEEEEEEeCC-e-eEEEEECEEEEeeeccC
Q 041145 135 KGHPVWEVAVETNQ-A-IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 135 ~~~~~~~v~~~~~~-~-~~~~~~d~vViAtG~~s 166 (522)
.....+.+.+.. + .+++++|.||.|.|.+|
T Consensus 141 --~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 141 --DDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp --TTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred --ccccccccccccCCceeEEEEeeeecccCccc
Confidence 223445555542 3 45899999999999885
No 132
>PRK06996 hypothetical protein; Provisional
Probab=98.75 E-value=5.4e-08 Score=99.90 Aligned_cols=139 Identities=19% Similarity=0.124 Sum_probs=83.0
Q ss_pred CcccccccccCCcEEEECCCHHHHHHHHHh--CC----CCcEEEccCCCCC---------------------cccCCCcc
Q 041145 1 MASAQNHVQYSSKIGIIGAGISGIATAKQL--RH----YDPLVFEATNSIG---------------------GVWKHCSF 53 (522)
Q Consensus 1 m~~~~~~~m~~~~vvIIGaG~aGl~~a~~l--~g----~~v~v~e~~~~~G---------------------G~w~~~~~ 53 (522)
|++.....-..++|+|||||++|+++|..| .| ++|+|+|+.+... |.|.....
T Consensus 1 ~~~~~~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~ 80 (398)
T PRK06996 1 MTTAASMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADAT 80 (398)
T ss_pred CchhhhccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCC
Confidence 544444111257999999999999999999 55 5799999974321 12221111
Q ss_pred C--cccccC--CCC--CcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCc
Q 041145 54 N--STKLQT--PRC--DFEFSDYPWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTA 127 (522)
Q Consensus 54 ~--~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~ 127 (522)
+ ...+.. ... .+.+.++..+. . ....++..+.+.|.+-++..++ .+.+++++++++. +
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~--~---------- 144 (398)
T PRK06996 81 PIEHIHVSQRGHFGRTLIDRDDHDVPA-L-GYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQ--D---------- 144 (398)
T ss_pred cccEEEEecCCCCceEEecccccCCCc-C-EEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeee--c----------
Confidence 1 010000 000 01111111110 0 1124567888888887877776 6888999998876 3
Q ss_pred cccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeec
Q 041145 128 GEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGK 164 (522)
Q Consensus 128 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~ 164 (522)
...+++++.++++.+++++|.||.|+|.
T Consensus 145 ---------~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 145 ---------ADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred ---------CCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 2356777665433357999999999995
No 133
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.74 E-value=8.2e-08 Score=98.82 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=79.8
Q ss_pred CcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCCc------c--cCC--CccCcccc-------cCCCCCcccCC-
Q 041145 12 SKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIGG------V--WKH--CSFNSTKL-------QTPRCDFEFSD- 69 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~GG------~--w~~--~~~~~~~~-------~~~~~~~~~~~- 69 (522)
+||+|||||++|+++|..| . |++|+|||+.+.... . +.+ ..+..+.+ -.+...+.+.+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 4899999999999999999 5 499999999764210 0 000 00000000 00000011100
Q ss_pred ----------CCCCC----CCC-CCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCC
Q 041145 70 ----------YPWPE----RDD-ASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLL 134 (522)
Q Consensus 70 ----------~~~~~----~~~-~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
..+.. ... ....++..+.+.|.+.+.+.++ .++++++|++++. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~--~----------------- 140 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFET--R----------------- 140 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEE--c-----------------
Confidence 00000 000 1135678888888888887777 7889999999976 3
Q ss_pred CCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 135 KGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.+.|++.++. ++.+|.||.|+|..|
T Consensus 141 --~~~v~v~~~~g~---~~~ad~vI~AdG~~S 167 (403)
T PRK07333 141 --DEGVTVTLSDGS---VLEARLLVAADGARS 167 (403)
T ss_pred --CCEEEEEECCCC---EEEeCEEEEcCCCCh
Confidence 235667766553 789999999999874
No 134
>PRK07588 hypothetical protein; Provisional
Probab=98.74 E-value=8.1e-08 Score=98.42 Aligned_cols=127 Identities=18% Similarity=0.234 Sum_probs=76.3
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC--c-c---cCCC----------------cc--CcccccCCCC--C
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG--G-V---WKHC----------------SF--NSTKLQTPRC--D 64 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G--G-~---w~~~----------------~~--~~~~~~~~~~--~ 64 (522)
+|+|||||++|+++|..| .|++|+|+|+.+... | . |... .+ ..+.+..... .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 799999999999999999 899999999987542 2 1 1110 00 0000000000 0
Q ss_pred cccCCCCCCCCCC-C-CCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEE
Q 041145 65 FEFSDYPWPERDD-A-SFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEV 142 (522)
Q Consensus 65 ~~~~~~~~~~~~~-~-~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (522)
..+....+..... . ...++.++...|.+.+.. ++ .++++++|++++. + .+.+.|
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v--~i~~~~~v~~i~~--~-------------------~~~v~v 137 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QV--ETIFDDSIATIDE--H-------------------RDGVRV 137 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-Ce--EEEeCCEEeEEEE--C-------------------CCeEEE
Confidence 1111000110000 1 124566666666543332 34 6899999999987 3 345777
Q ss_pred EEEeCCeeEEEEECEEEEeeeccC
Q 041145 143 AVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 143 ~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
++++++ ++.+|.||.|.|..|
T Consensus 138 ~~~~g~---~~~~d~vIgADG~~S 158 (391)
T PRK07588 138 TFERGT---PRDFDLVIGADGLHS 158 (391)
T ss_pred EECCCC---EEEeCEEEECCCCCc
Confidence 777664 678999999999885
No 135
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.73 E-value=9.6e-08 Score=97.75 Aligned_cols=129 Identities=11% Similarity=0.100 Sum_probs=77.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC---cccCCCc----------cCcccc--------cCCCCCccc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG---GVWKHCS----------FNSTKL--------QTPRCDFEF 67 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G---G~w~~~~----------~~~~~~--------~~~~~~~~~ 67 (522)
..+|+|||||++|+++|..| .|++|+|+|+.+... ..|.... ...+.+ ..+...+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 56999999999999999999 899999999987652 2222100 000000 001011111
Q ss_pred CC-----CCCC---CCCCC--CCCChHHHHHHHHHHHHhcC-CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCC
Q 041145 68 SD-----YPWP---ERDDA--SFPSHVELLDYLHGYAVHFD-VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKG 136 (522)
Q Consensus 68 ~~-----~~~~---~~~~~--~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (522)
.+ ..+. ...+. ....+..+...|.+.+++.+ + .+. +++|++++. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v--~~~-~~~v~~i~~--~------------------- 140 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNL--TWF-PARAQGLEV--D------------------- 140 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCc--EEE-cceeEEEEe--c-------------------
Confidence 10 0000 00000 11346677777777777665 4 455 888988875 3
Q ss_pred CCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 137 HPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 137 ~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
++.+.|++.++. ++.+|.||.|+|..|
T Consensus 141 ~~~~~v~~~~g~---~~~a~~vI~adG~~S 167 (388)
T PRK07608 141 PDAATLTLADGQ---VLRADLVVGADGAHS 167 (388)
T ss_pred CCeEEEEECCCC---EEEeeEEEEeCCCCc
Confidence 235677776653 799999999999874
No 136
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.72 E-value=5.8e-08 Score=99.36 Aligned_cols=127 Identities=25% Similarity=0.312 Sum_probs=80.9
Q ss_pred EEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccc-c-------------CCCCC----cccC------
Q 041145 15 GIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKL-Q-------------TPRCD----FEFS------ 68 (522)
Q Consensus 15 vIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~-~-------------~~~~~----~~~~------ 68 (522)
+|||||+||++||..| .|.+|+|+|+++.+|+.+....--.+.+ + .+... ..|.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999 8999999999998887543211000000 0 00000 0000
Q ss_pred -----CCCCCCC-CCCCCC---ChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCC
Q 041145 69 -----DYPWPER-DDASFP---SHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPV 139 (522)
Q Consensus 69 -----~~~~~~~-~~~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (522)
+.++... ....|+ ...++.+.+...+++.++ .+.++++|+++.. + .+.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~--~-------------------~~~ 137 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKK--D-------------------DNG 137 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEe--c-------------------CCe
Confidence 0111110 112232 357788888888888887 7889999999876 3 235
Q ss_pred EEEEEEeCCeeEEEEECEEEEeeeccCCCC
Q 041145 140 WEVAVETNQAIQWYGFELLVMCIGKFGDIP 169 (522)
Q Consensus 140 ~~v~~~~~~~~~~~~~d~vViAtG~~s~~p 169 (522)
|.|++. +. ++.+|.||+|+|.. +.|
T Consensus 138 ~~v~~~-~~---~i~ad~VIlAtG~~-s~p 162 (400)
T TIGR00275 138 FGVETS-GG---EYEADKVILATGGL-SYP 162 (400)
T ss_pred EEEEEC-Cc---EEEcCEEEECCCCc-ccC
Confidence 666653 32 68999999999987 444
No 137
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.72 E-value=9.1e-08 Score=98.04 Aligned_cols=130 Identities=17% Similarity=0.253 Sum_probs=77.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC----C---------------------cccCCC------ccCccc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI----G---------------------GVWKHC------SFNSTK 57 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~----G---------------------G~w~~~------~~~~~~ 57 (522)
.+||+|||||++|+++|..| .|++|+|+|+.+.. + |.|..- .+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 45999999999999999999 79999999997521 1 111110 000000
Q ss_pred c-cCCCCCcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCC
Q 041145 58 L-QTPRCDFEFSDYPWPERDDASFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLK 135 (522)
Q Consensus 58 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (522)
. ........+..............++..+.+.|.+.++.. ++ .+.++++|+++.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~--~------------------ 142 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNV--TLRCPASLQALQR--D------------------ 142 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCc--EEEcCCeeEEEEE--c------------------
Confidence 0 000001111100000000011245666777776666655 55 5778999999876 3
Q ss_pred CCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 136 GHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.|.|++.++. ++.+|.||.|+|..|
T Consensus 143 -~~~~~v~~~~g~---~~~a~~vI~AdG~~S 169 (391)
T PRK08020 143 -DDGWELTLADGE---EIQAKLVIGADGANS 169 (391)
T ss_pred -CCeEEEEECCCC---EEEeCEEEEeCCCCc
Confidence 245777776654 789999999999884
No 138
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.72 E-value=1.2e-07 Score=96.79 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=82.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccC-CCC---C--cccCCC---ccCcccc-----------------cCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEAT-NSI---G--GVWKHC---SFNSTKL-----------------QTPR 62 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~-~~~---G--G~w~~~---~~~~~~~-----------------~~~~ 62 (522)
..+|+|||||++|+++|..| .|++|+|||+. +.+ | .....+ .+..+.+ ....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 35899999999999999999 89999999998 221 1 000000 0011111 0000
Q ss_pred -CCcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC-CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCE
Q 041145 63 -CDFEFSDYPWPERDDASFPSHVELLDYLHGYAVHFD-VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVW 140 (522)
Q Consensus 63 -~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (522)
....|..............+..++..-|.+.+...+ + .+.++++|+.++. + ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~--~-------------------~~~v 138 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQ--D-------------------GDGV 138 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEE--c-------------------CCce
Confidence 111111111111110233577888888888887766 5 7889999999988 3 2345
Q ss_pred EEEEE-eCCeeEEEEECEEEEeeeccC
Q 041145 141 EVAVE-TNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 141 ~v~~~-~~~~~~~~~~d~vViAtG~~s 166 (522)
.+++. +++ ++.||.||-|.|.+|
T Consensus 139 ~v~l~~dG~---~~~a~llVgADG~~S 162 (387)
T COG0654 139 TVTLSFDGE---TLDADLLVGADGANS 162 (387)
T ss_pred EEEEcCCCc---EEecCEEEECCCCch
Confidence 57777 553 899999999999885
No 139
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.71 E-value=1.7e-07 Score=95.99 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=74.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC---C----cccCCC---ccCcccc-------cCCCCCcccC---
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI---G----GVWKHC---SFNSTKL-------QTPRCDFEFS--- 68 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~---G----G~w~~~---~~~~~~~-------~~~~~~~~~~--- 68 (522)
..+|+|||||++|+++|..| .|++|+|+|+.+.. + +....+ ....+.+ ..+...+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 45899999999999999999 89999999998641 1 110000 0000000 0011111110
Q ss_pred ---CCCCCCCC-CC--CCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEE
Q 041145 69 ---DYPWPERD-DA--SFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEV 142 (522)
Q Consensus 69 ---~~~~~~~~-~~--~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (522)
.++++... .. ...++.++.+.|...+...+. .++++++|++++... ...-.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv--~v~~~~~v~~i~~~~--------------------~~~~~V 139 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGG--PIRFEASDVALHDFD--------------------SDRPYV 139 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCC--eEEEeeeEEEEEecC--------------------CCceEE
Confidence 11111110 00 112344555555444555565 689999999886511 122345
Q ss_pred EEEeCCeeEEEEECEEEEeeeccC
Q 041145 143 AVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 143 ~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
++..++...++++|.||.|.|.+|
T Consensus 140 ~~~~~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 140 TYEKDGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred EEEcCCeEEEEEeCEEEECCCCCC
Confidence 554222235789999999999985
No 140
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.71 E-value=8.6e-08 Score=98.36 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=75.0
Q ss_pred cCCcEEEECCCHHHHHHHHHh--C---CCCcEEEccCCCC-----C------cccCC--------CccCcccc-cCCCCC
Q 041145 10 YSSKIGIIGAGISGIATAKQL--R---HYDPLVFEATNSI-----G------GVWKH--------CSFNSTKL-QTPRCD 64 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~---g~~v~v~e~~~~~-----G------G~w~~--------~~~~~~~~-~~~~~~ 64 (522)
+.++|+|||||++|+++|..| . |++|+|||+.... + +.+.. ..++.+.- ..+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 367999999999999999999 5 9999999995211 1 01110 00010000 000000
Q ss_pred cccCC------CCCC--CCCCC---CCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCC
Q 041145 65 FEFSD------YPWP--ERDDA---SFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGS 132 (522)
Q Consensus 65 ~~~~~------~~~~--~~~~~---~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~ 132 (522)
+.+.+ ..+. +...+ ....+..+...+.+.+... +. .+.++++|+++.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~--~~~~~~~v~~i~~--~--------------- 142 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGV--TLHCPARVANVER--T--------------- 142 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCc--EEEcCCEEEEEEE--c---------------
Confidence 00000 0000 00000 1134455566665555443 44 6788999999876 3
Q ss_pred CCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 133 LLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.|.|++.++. ++.+|.||.|+|..|
T Consensus 143 ----~~~~~v~~~~g~---~~~a~~vI~AdG~~S 169 (395)
T PRK05732 143 ----QGSVRVTLDDGE---TLTGRLLVAADGSHS 169 (395)
T ss_pred ----CCeEEEEECCCC---EEEeCEEEEecCCCh
Confidence 345777776653 689999999999874
No 141
>PRK10015 oxidoreductase; Provisional
Probab=98.70 E-value=1.4e-07 Score=97.35 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=78.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc------ccCCC----ccCcccccC------CCCCcccCC---
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG------VWKHC----SFNSTKLQT------PRCDFEFSD--- 69 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG------~w~~~----~~~~~~~~~------~~~~~~~~~--- 69 (522)
.+||+||||||||++||..| .|++|+|+|+.+.+|. ..... ..|++.... ....+.+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES 84 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence 46999999999999999999 8999999999876542 21111 112111000 011111110
Q ss_pred ---CCCCCC------CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCE
Q 041145 70 ---YPWPER------DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVW 140 (522)
Q Consensus 70 ---~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (522)
..+... .......+..+..+|.+.+++.+. .+..+++|+.+.. + ++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv--~i~~~~~V~~i~~--~-------------------~~~v 141 (429)
T PRK10015 85 AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA--QFIPGVRVDALVR--E-------------------GNKV 141 (429)
T ss_pred ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCC--EEECCcEEEEEEE--e-------------------CCEE
Confidence 011100 001124567777888888888887 6888999998876 2 2233
Q ss_pred EEEEEeCCeeEEEEECEEEEeeecc
Q 041145 141 EVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 141 ~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
.....++ .++.+|.||+|+|..
T Consensus 142 ~~v~~~~---~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 142 TGVQAGD---DILEANVVILADGVN 163 (429)
T ss_pred EEEEeCC---eEEECCEEEEccCcc
Confidence 3222222 368999999999976
No 142
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.69 E-value=1.3e-07 Score=97.68 Aligned_cols=126 Identities=23% Similarity=0.294 Sum_probs=75.8
Q ss_pred cEEEECCCHHHHHHHHHh--CC-CCcEEEccCCCCCcc------cCCC--ccCcccc--------c---CCCC--CcccC
Q 041145 13 KIGIIGAGISGIATAKQL--RH-YDPLVFEATNSIGGV------WKHC--SFNSTKL--------Q---TPRC--DFEFS 68 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g-~~v~v~e~~~~~GG~------w~~~--~~~~~~~--------~---~~~~--~~~~~ 68 (522)
+|+|||||++||++|..| .| ++|+|||+.+.++.. +.+. ....+.+ . .+.. .+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 799999999999999999 56 699999998876421 1110 0000000 0 0000 01110
Q ss_pred C--------CCCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCE
Q 041145 69 D--------YPWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVW 140 (522)
Q Consensus 69 ~--------~~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (522)
+ .............+.++.+.|...+.. ..++++++|++++. + .+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~--~-------------------~~~~ 136 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEE--Q-------------------AEEV 136 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEe--c-------------------CCcE
Confidence 0 000000101124566666666554432 24789999999987 3 3458
Q ss_pred EEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 141 EVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 141 ~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.|++.++. ++.+|.||.|+|.+|
T Consensus 137 ~v~~~~g~---~~~ad~vVgADG~~S 159 (414)
T TIGR03219 137 QVLFTDGT---EYRCDLLIGADGIKS 159 (414)
T ss_pred EEEEcCCC---EEEeeEEEECCCccH
Confidence 88887764 789999999999884
No 143
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.68 E-value=1.7e-07 Score=95.11 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=78.9
Q ss_pred cEEEECCCHHHHHHHHHh----CCCCcEEEccCCCC--Cc--ccCCC--c---cCcccccC-CCCCcccCCCCCCCCC-C
Q 041145 13 KIGIIGAGISGIATAKQL----RHYDPLVFEATNSI--GG--VWKHC--S---FNSTKLQT-PRCDFEFSDYPWPERD-D 77 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~--GG--~w~~~--~---~~~~~~~~-~~~~~~~~~~~~~~~~-~ 77 (522)
||+|||||+||+++|.+| .|.+|+|+|+++.. .. +|... . +..+.... +.....+.+....... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 68999999998776 21 23210 0 00110000 1111111111100000 0
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECE
Q 041145 78 ASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFEL 157 (522)
Q Consensus 78 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~ 157 (522)
-.......+.+++..-+...+ .+.++++|++|+. + ...+.|++.++. ++.++.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~--~-------------------~~~~~v~~~~g~---~i~a~~ 133 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEE--T-------------------GDGVLVVLADGR---TIRARV 133 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEe--c-------------------CceEEEEECCCC---EEEeeE
Confidence 123677888888877776333 4788999999987 2 234667777775 899999
Q ss_pred EEEeeecc
Q 041145 158 LVMCIGKF 165 (522)
Q Consensus 158 vViAtG~~ 165 (522)
||-|+|..
T Consensus 134 VvDa~g~~ 141 (374)
T PF05834_consen 134 VVDARGPS 141 (374)
T ss_pred EEECCCcc
Confidence 99999954
No 144
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.68 E-value=9.7e-08 Score=97.50 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=77.6
Q ss_pred cEEEECCCHHHHHHHHHh--CC-CCcEEEccCCCCCc--------c--cCCC--ccCcccc-------cCCCCCcccCC-
Q 041145 13 KIGIIGAGISGIATAKQL--RH-YDPLVFEATNSIGG--------V--WKHC--SFNSTKL-------QTPRCDFEFSD- 69 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g-~~v~v~e~~~~~GG--------~--w~~~--~~~~~~~-------~~~~~~~~~~~- 69 (522)
||+|||||++|+++|..| .| ++|+|+|+.+...- . +... ....+.+ ..+...+.+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 699999999999999999 89 99999999764310 1 1000 0000000 00001111110
Q ss_pred -------CCCCCCCCC---CCCChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCC
Q 041145 70 -------YPWPERDDA---SFPSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHP 138 (522)
Q Consensus 70 -------~~~~~~~~~---~~~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (522)
+...+...+ ....+.++.+.|.+.+... ++ .++++++|+++.. + .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~--~-------------------~~ 137 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIR--N-------------------QD 137 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEE--c-------------------CC
Confidence 000000000 1145667777777777663 66 6888999999976 3 23
Q ss_pred CEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 139 VWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 139 ~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.|++.++. ++.+|.||.|+|..|
T Consensus 138 ~~~v~~~~g~---~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 138 YVRVTLDNGQ---QLRAKLLIAADGANS 162 (382)
T ss_pred eEEEEECCCC---EEEeeEEEEecCCCh
Confidence 5677766553 789999999999874
No 145
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.66 E-value=2.4e-07 Score=95.17 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=79.0
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC----cc--cCC--------CccCccc-ccCCCCCcccCC-----
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG----GV--WKH--------CSFNSTK-LQTPRCDFEFSD----- 69 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G----G~--w~~--------~~~~~~~-~~~~~~~~~~~~----- 69 (522)
.+|+|||||++|+++|..| .|++|+|+|+.+.+. |. +.+ ..++.+. ...+...+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 5899999999999999999 899999999987642 11 110 0000000 000001111111
Q ss_pred ----CCC---CCC-CCCCC--CChHHHHHHHHHHHHhc-CCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCC
Q 041145 70 ----YPW---PER-DDASF--PSHVELLDYLHGYAVHF-DVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHP 138 (522)
Q Consensus 70 ----~~~---~~~-~~~~~--~~~~~~~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (522)
..+ ... ....+ .++..+.+.|.+.+... ++ .++++++|++++. + .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i--~v~~~~~v~~~~~--~-------------------~~ 139 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGI--EIKLGAEMTSQRQ--T-------------------GN 139 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc--EEEECCEEEEEec--C-------------------CC
Confidence 000 000 00112 35677777776666543 44 6889999999976 3 24
Q ss_pred CEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 139 VWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 139 ~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.|++.++++.+++.+|.||.|.|.+|
T Consensus 140 ~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 140 SITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred ceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 5667765443334689999999999985
No 146
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.66 E-value=2.5e-07 Score=94.61 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
.++|+|||||++|+++|..| .|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46999999999999999999 8999999999874
No 147
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.66 E-value=3.5e-07 Score=94.81 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=78.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC----CcccCCCcc-----C---------cccccCCCC-CcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI----GGVWKHCSF-----N---------STKLQTPRC-DFEFSD 69 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~----GG~w~~~~~-----~---------~~~~~~~~~-~~~~~~ 69 (522)
.+||+||||||||+++|..| .|++|+|+|+.... ||....... + +..+..|.. ...+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 57999999999999999999 89999999987532 221110000 0 111111111 011110
Q ss_pred CCCCCCCCCC--CCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeC
Q 041145 70 YPWPERDDAS--FPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETN 147 (522)
Q Consensus 70 ~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (522)
. .. .. .. ..++..+.++|.+.+.+.|. .++. .++++++...+ . .+.+.|++.+.
T Consensus 119 ~-~~-~~-~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~-~~v~~i~~~~~-~-----------------~~~~~v~~~~~ 174 (450)
T PLN00093 119 T-LK-PH-EYIGMVRREVLDSFLRERAQSNGA--TLIN-GLFTRIDVPKD-P-----------------NGPYVIHYTSY 174 (450)
T ss_pred c-CC-CC-CeEEEecHHHHHHHHHHHHHHCCC--EEEe-ceEEEEEeccC-C-----------------CCcEEEEEEec
Confidence 0 00 00 11 26888899999988888886 4544 45767654111 0 24566766542
Q ss_pred ------CeeEEEEECEEEEeeeccC
Q 041145 148 ------QAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 148 ------~~~~~~~~d~vViAtG~~s 166 (522)
+...++.+|.||.|+|..|
T Consensus 175 ~~~~~~g~~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 175 DSGSGAGTPKTLEVDAVIGADGANS 199 (450)
T ss_pred cccccCCCccEEEeCEEEEcCCcch
Confidence 1134799999999999874
No 148
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.64 E-value=2.5e-07 Score=94.10 Aligned_cols=124 Identities=14% Similarity=0.231 Sum_probs=77.0
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC-------C----------------cccCC-----CccCcccccCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSI-------G----------------GVWKH-----CSFNSTKLQTPR 62 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~-------G----------------G~w~~-----~~~~~~~~~~~~ 62 (522)
||+|||||++|+++|..| .|++|+|+|+.+.. + |.|.. ..+..+.+..+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 899999999999999999 89999999986321 1 11110 001111110000
Q ss_pred --CCcccCCCCCCCCCC-CCCCChHHHHHHHHHHHHhcC-CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCC
Q 041145 63 --CDFEFSDYPWPERDD-ASFPSHVELLDYLHGYAVHFD-VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHP 138 (522)
Q Consensus 63 --~~~~~~~~~~~~~~~-~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (522)
....+.. ..... ....++.++.+.|.+-+...+ + .++++++|+++.. + .+
T Consensus 83 g~~~~~~~~---~~~~~~g~~v~r~~L~~~L~~~~~~~~~v--~~~~~~~v~~i~~--~-------------------~~ 136 (374)
T PRK06617 83 ASEILDLRN---DADAVLGYVVKNSDFKKILLSKITNNPLI--TLIDNNQYQEVIS--H-------------------ND 136 (374)
T ss_pred CceEEEecC---CCCCCcEEEEEHHHHHHHHHHHHhcCCCc--EEECCCeEEEEEE--c-------------------CC
Confidence 0111111 00000 122567788888877777665 3 5778999999876 3 23
Q ss_pred CEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 139 VWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 139 ~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.+.|++.++ ++.+|.||.|.|.+|
T Consensus 137 ~v~v~~~~~----~~~adlvIgADG~~S 160 (374)
T PRK06617 137 YSIIKFDDK----QIKCNLLIICDGANS 160 (374)
T ss_pred eEEEEEcCC----EEeeCEEEEeCCCCc
Confidence 466776443 799999999999885
No 149
>PRK05868 hypothetical protein; Validated
Probab=98.63 E-value=4.7e-07 Score=91.97 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
+|+|||||++|+++|..| .|++|+|||+.+.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 899999999999999999 89999999998765
No 150
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.62 E-value=3.1e-08 Score=73.62 Aligned_cols=46 Identities=37% Similarity=0.555 Sum_probs=38.7
Q ss_pred EECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCC
Q 041145 16 IIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTP 61 (522)
Q Consensus 16 IIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~ 61 (522)
|||||++||++|..| .|++|+|||+++.+||.+....+++..++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g 48 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLG 48 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeec
Confidence 899999999999999 8999999999999999998755666554443
No 151
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.61 E-value=3.3e-07 Score=95.21 Aligned_cols=135 Identities=17% Similarity=0.219 Sum_probs=77.8
Q ss_pred CcEEEECCCHHHHHHHHHh-C-----CCCcEEEccCC--CCC-----------------------------cccCCC---
Q 041145 12 SKIGIIGAGISGIATAKQL-R-----HYDPLVFEATN--SIG-----------------------------GVWKHC--- 51 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l-~-----g~~v~v~e~~~--~~G-----------------------------G~w~~~--- 51 (522)
+||+|||||++|+++|..| . |++|+|||+++ ..- |+|..-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 4899999999999999999 5 89999999943 211 111100
Q ss_pred ---ccCcccccCC--CCCcccCCCCCCCCCCCCCCChHHHHHHHHHHHHhcC---CcCceEeceEEEEEEEcCCCCcccc
Q 041145 52 ---SFNSTKLQTP--RCDFEFSDYPWPERDDASFPSHVELLDYLHGYAVHFD---VLKYIKFNSKVVEIRHLGDRDTARV 123 (522)
Q Consensus 52 ---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~---l~~~i~~~~~V~~v~~~~~~~~~~~ 123 (522)
.+..+..... .....|...+..... ....++..+...|.+.+.+.+ + .++++++|++++......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~L~~~~~~~~~~~v--~i~~~~~v~~i~~~~~~~---- 153 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDM-ACIIENDNIQNSLYNRLQEYNGDNV--KILNPARLISVTIPSKYP---- 153 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCce-EEEEEHHHHHHHHHHHHHhCCCCCe--EEecCCeeEEEEeccccc----
Confidence 0000000000 001112111100000 112456777777777776654 4 688999999997521000
Q ss_pred cCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccC
Q 041145 124 SDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s 166 (522)
.......+|++.+++ ++++|.||.|.|.+|
T Consensus 154 ----------~~~~~~v~v~~~~g~---~i~a~llVgADG~~S 183 (437)
T TIGR01989 154 ----------NDNSNWVHITLSDGQ---VLYTKLLIGADGSNS 183 (437)
T ss_pred ----------cCCCCceEEEEcCCC---EEEeeEEEEecCCCC
Confidence 000234567766664 799999999999985
No 152
>PLN02697 lycopene epsilon cyclase
Probab=98.60 E-value=3.8e-07 Score=95.67 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC---CcccCCCccCcccc-----cC-CCCCcccCCCCCCCCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI---GGVWKHCSFNSTKL-----QT-PRCDFEFSDYPWPERDDAS 79 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~---GG~w~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~ 79 (522)
.+||+|||||+||+++|..| .|++|+|+|+...+ .|+|.. .+..+.+ +. +.....+.+....... ..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~-~~ 185 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLEDCIEHVWRDTIVYLDDDKPIMIG-RA 185 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHHHHHhhcCCcEEEecCCceeecc-Cc
Confidence 46999999999999999999 89999999986443 356643 1111111 00 0001111110000001 12
Q ss_pred --CCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEE-EEEeCCeeEEEEEC
Q 041145 80 --FPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEV-AVETNQAIQWYGFE 156 (522)
Q Consensus 80 --~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~d 156 (522)
...+..+.+.+...+.+.++ .+ ++++|+.+.. + .+.+.+ .+.++. ++.++
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~--~-------------------~~~~~vv~~~dG~---~i~A~ 238 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITE--A-------------------SDGLRLVACEDGR---VIPCR 238 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEE--c-------------------CCcEEEEEEcCCc---EEECC
Confidence 25777888888887777776 34 6889998876 2 223443 334443 79999
Q ss_pred EEEEeeeccC
Q 041145 157 LLVMCIGKFG 166 (522)
Q Consensus 157 ~vViAtG~~s 166 (522)
.||+|+|..|
T Consensus 239 lVI~AdG~~S 248 (529)
T PLN02697 239 LATVASGAAS 248 (529)
T ss_pred EEEECCCcCh
Confidence 9999999884
No 153
>PRK07538 hypothetical protein; Provisional
Probab=98.60 E-value=7e-07 Score=92.18 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=77.1
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC--cccCCCccCc-------ccc-------cCCCCCcccCC-----
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG--GVWKHCSFNS-------TKL-------QTPRCDFEFSD----- 69 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G--G~w~~~~~~~-------~~~-------~~~~~~~~~~~----- 69 (522)
+|+|||||++|+++|..| .|++|+|||+.+.+. |.-.. ..|+ +.+ ..+...+.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~-l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGIN-LLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCccee-eCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 899999999999999999 899999999987543 11100 0000 000 01111111100
Q ss_pred ---CCCCC--C--CCCCCCChHHHHHHHHHHHHh-cCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEE
Q 041145 70 ---YPWPE--R--DDASFPSHVELLDYLHGYAVH-FDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWE 141 (522)
Q Consensus 70 ---~~~~~--~--~~~~~~~~~~~~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (522)
.+... . ......++.++...|.+.+.+ .+. ..++++++|++++. ++ +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~--~~-------------------~~~~ 138 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQ--DA-------------------DVTV 138 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEe--cC-------------------CceE
Confidence 01100 0 001124677777777665543 442 25899999999986 31 2234
Q ss_pred EEEEeCC--eeEEEEECEEEEeeeccC
Q 041145 142 VAVETNQ--AIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 142 v~~~~~~--~~~~~~~d~vViAtG~~s 166 (522)
+.+.++. ..+++.+|.||.|.|.+|
T Consensus 139 ~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 139 VFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred EEEeccCCCccceEEeeEEEECCCCCH
Confidence 5554432 135799999999999985
No 154
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.59 E-value=6.3e-08 Score=74.89 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=31.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCcee
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWT 248 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~ 248 (522)
||+|||+|.+|+|+|..+++.+. +||++.|++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-----~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-----EVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-----EEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-----EEEEEeccchhh
Confidence 69999999999999999999864 599999998743
No 155
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.57 E-value=1.1e-07 Score=95.84 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEE-EEEEeCCeeEEEEECEEE
Q 041145 81 PSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWE-VAVETNQAIQWYGFELLV 159 (522)
Q Consensus 81 ~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~d~vV 159 (522)
.....+...+...+++.|. .++.+++|+++.. + .++|+ |.+.++ .+.+|+||
T Consensus 144 i~~~~l~~~l~~~~~~~Gv--~i~~~~~V~~i~~--~-------------------~~~v~gv~~~~g----~i~ad~vV 196 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGV--EIRTGTEVTSIDV--D-------------------GGRVTGVRTSDG----EIRADRVV 196 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT---EEEESEEEEEEEE--E-------------------TTEEEEEEETTE----EEEECEEE
T ss_pred ccccchhhhhHHHHHHhhh--hccccccccchhh--c-------------------cccccccccccc----ccccceeE
Confidence 3567888888888888887 7999999999987 3 34566 766555 59999999
Q ss_pred Eeeecc
Q 041145 160 MCIGKF 165 (522)
Q Consensus 160 iAtG~~ 165 (522)
+|+|..
T Consensus 197 ~a~G~~ 202 (358)
T PF01266_consen 197 LAAGAW 202 (358)
T ss_dssp E--GGG
T ss_pred eccccc
Confidence 999987
No 156
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.57 E-value=1.4e-06 Score=88.83 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.+||+|||+|.+|+++|..| .|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 46999999999999999999 899999999863
No 157
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.55 E-value=3.6e-08 Score=101.88 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=33.0
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCcc---Cccc----c------cCCCCCcccCCCCCCC---
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSF---NSTK----L------QTPRCDFEFSDYPWPE--- 74 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~---~~~~----~------~~~~~~~~~~~~~~~~--- 74 (522)
||||||||++|++||..+ .|.+|+|+|+.+.+||....... .... . .....+......+.+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 799999999999999999 99999999999999997764211 1100 0 0000000000001110
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEE
Q 041145 75 RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYG 154 (522)
Q Consensus 75 ~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 154 (522)
+..........+...+.+.+++.++ .+.+++.|+++.. +. ...+.|++.+.++..++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~--~~------------------~~i~~V~~~~~~g~~~i~ 138 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIR--DG------------------GRITGVIVETKSGRKEIR 138 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccc--cc------------------cccccccccccccccccc
Confidence 0001134445556667777777787 7999999999887 31 233456665533456899
Q ss_pred ECEEEEeeecc
Q 041145 155 FELLVMCIGKF 165 (522)
Q Consensus 155 ~d~vViAtG~~ 165 (522)
++.+|-|||--
T Consensus 139 A~~~IDaTG~g 149 (428)
T PF12831_consen 139 AKVFIDATGDG 149 (428)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 99999999943
No 158
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.55 E-value=5e-07 Score=81.30 Aligned_cols=102 Identities=25% Similarity=0.322 Sum_probs=59.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc-ccCCC-ccCcccccCCCCCc-ccCCCCCCCCCCCCC-CChH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG-VWKHC-SFNSTKLQTPRCDF-EFSDYPWPERDDASF-PSHV 84 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG-~w~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 84 (522)
.+||+||||||+||+||+.| .|++|+|||++..+|| .|..- .++...++.+...+ .=-+.++.+.....| .+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 46999999999999999999 8999999999998875 78653 55556665554322 111222222221122 3566
Q ss_pred HHHHHHHHHHHhcCCcCceEeceEEEEEEE
Q 041145 85 ELLDYLHGYAVHFDVLKYIKFNSKVVEIRH 114 (522)
Q Consensus 85 ~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~ 114 (522)
++...|..-+-+.+. .+.-.+.|+++-.
T Consensus 97 ~~~s~L~s~a~~aGa--kifn~~~vEDvi~ 124 (230)
T PF01946_consen 97 EFTSTLASKAIDAGA--KIFNLTSVEDVIV 124 (230)
T ss_dssp HHHHHHHHHHHTTTE--EEEETEEEEEEEE
T ss_pred HHHHHHHHHHhcCCC--EEEeeeeeeeeEE
Confidence 666666555555665 5666678888765
No 159
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.53 E-value=4.3e-07 Score=86.42 Aligned_cols=38 Identities=45% Similarity=0.687 Sum_probs=34.6
Q ss_pred CcEEEECCCHHHHHHHHHh-CCCCcEEEccCCCCCcccC
Q 041145 12 SKIGIIGAGISGIATAKQL-RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~~GG~w~ 49 (522)
.+|+|||+|++||+||..| .-++|++||.+..+||.-+
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHAN 47 (447)
T ss_pred cceEEEcccchhhhhHHhhhcccceEEEeccccccCccc
Confidence 3899999999999999999 8889999999999998544
No 160
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.50 E-value=1.6e-06 Score=66.93 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=55.6
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHHH
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDYL 90 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 90 (522)
+|+|||||+.|+.+|..| .|.+|+++++++.+. -.-.+++..++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----------------------------------~~~~~~~~~~~ 46 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----------------------------------PGFDPDAAKIL 46 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----------------------------------TTSSHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----------------------------------hhcCHHHHHHH
Confidence 589999999999999999 899999999987541 11235677888
Q ss_pred HHHHHhcCCcCceEeceEEEEEEE
Q 041145 91 HGYAVHFDVLKYIKFNSKVVEIRH 114 (522)
Q Consensus 91 ~~~~~~~~l~~~i~~~~~V~~v~~ 114 (522)
....++.++ .+.+++.+.+++.
T Consensus 47 ~~~l~~~gV--~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 47 EEYLRKRGV--EVHTNTKVKEIEK 68 (80)
T ss_dssp HHHHHHTTE--EEEESEEEEEEEE
T ss_pred HHHHHHCCC--EEEeCCEEEEEEE
Confidence 888888888 8999999999998
No 161
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.49 E-value=1.1e-06 Score=89.54 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
.+||+|||||+.|+++|.+| .|++|+|+|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 56999999999999999999 8999999999764
No 162
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.49 E-value=3.1e-06 Score=88.08 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=79.8
Q ss_pred cEEEECCCHHHHHHHHHh--CC-CCcEEEccCCCCCcccCCC----ccCccc------c------------------cCC
Q 041145 13 KIGIIGAGISGIATAKQL--RH-YDPLVFEATNSIGGVWKHC----SFNSTK------L------------------QTP 61 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g-~~v~v~e~~~~~GG~w~~~----~~~~~~------~------------------~~~ 61 (522)
||||||+|.+|++||.++ .| .+|+|+|+.+..||.-..+ ...... + ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 699999999999999999 89 9999999998876542210 000000 0 000
Q ss_pred ----------C---CCcccCCCCCCC-------C--CCC------CCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEE
Q 041145 62 ----------R---CDFEFSDYPWPE-------R--DDA------SFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIR 113 (522)
Q Consensus 62 ----------~---~~~~~~~~~~~~-------~--~~~------~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~ 113 (522)
. ..+. ...++.. . ... ......++...+...+++.++ .+.++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv--~i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGI--DTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCC--EEEeCCEeeEeE
Confidence 0 0001 0111100 0 000 113456788888888888888 799999999998
Q ss_pred EcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEEEECEEEEeeecc
Q 041145 114 HLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWYGFELLVMCIGKF 165 (522)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~d~vViAtG~~ 165 (522)
. +++ ...+-|.+.+.++ ...+.++.||+|||.+
T Consensus 158 ~--~~~-----------------g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 158 Q--DDQ-----------------GTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred E--CCC-----------------CcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 7 321 1222344444332 3457899999999987
No 163
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.48 E-value=1.5e-06 Score=91.51 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=32.7
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC-CCCc
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEATN-SIGG 46 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~-~~GG 46 (522)
..+||+|||||+||+.||..+ .|.+|+++|++. .+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 367999999999999999999 899999999983 5654
No 164
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.47 E-value=1.1e-06 Score=90.00 Aligned_cols=34 Identities=38% Similarity=0.456 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIG 45 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~G 45 (522)
.||+|||||++|+++|.+| . |.+|+|+|+...+|
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 5999999999999999999 5 89999999987554
No 165
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.47 E-value=1.2e-06 Score=88.72 Aligned_cols=139 Identities=19% Similarity=0.280 Sum_probs=78.7
Q ss_pred cEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCCc--ccCCCc--cCcc---------cccCCCCCcccCCCCCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIGG--VWKHCS--FNST---------KLQTPRCDFEFSDYPWPER 75 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~GG--~w~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~ 75 (522)
||+|||||+||+++|..| . |++|+|+|+.+.+|| +|.... .... ...-+.....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 699999999999999999 4 899999999988876 343211 0000 0000010111111100000
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEE
Q 041145 76 DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGF 155 (522)
Q Consensus 76 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 155 (522)
.........++.+++.. +.+. .+.++++|++++. + . |++.++. ++.+
T Consensus 81 ~~Y~~I~r~~f~~~l~~---~l~~--~i~~~~~V~~v~~--~---------------------~--v~l~dg~---~~~A 127 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQ---AFPE--GVILGRKAVGLDA--D---------------------G--VDLAPGT---RINA 127 (370)
T ss_pred CCceEEEHHHHHHHHHH---hhcc--cEEecCEEEEEeC--C---------------------E--EEECCCC---EEEe
Confidence 00122445566666543 2233 3777889988842 1 2 5555554 7999
Q ss_pred CEEEEeeeccCCCCCCCCCCCCCCccccCCceeec
Q 041145 156 ELLVMCIGKFGDIPRMPAFPANKGEEIFGGKVLHS 190 (522)
Q Consensus 156 d~vViAtG~~s~~p~~p~~p~~~G~~~f~g~~~hs 190 (522)
|.||.|.|..| ..+... |...|.|-.+..
T Consensus 128 ~~VI~A~G~~s---~~~~~~---~~Q~f~G~~~r~ 156 (370)
T TIGR01789 128 RSVIDCRGFKP---SAHLKG---GFQVFLGREMRL 156 (370)
T ss_pred eEEEECCCCCC---Cccccc---eeeEEEEEEEEE
Confidence 99999999762 111123 666666655443
No 166
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.46 E-value=3.7e-06 Score=91.00 Aligned_cols=138 Identities=16% Similarity=0.168 Sum_probs=81.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--C-CCCcEEEccCCCC---C---cccCC----------------CccC--cccccCC--
Q 041145 11 SSKIGIIGAGISGIATAKQL--R-HYDPLVFEATNSI---G---GVWKH----------------CSFN--STKLQTP-- 61 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~-g~~v~v~e~~~~~---G---G~w~~----------------~~~~--~~~~~~~-- 61 (522)
..+|+||||||+||++|..| . |++|+|||+.+.. | |.+.. ..++ .+..-.+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 56999999999999999999 4 8999999998643 1 11110 0000 0000000
Q ss_pred ---CCCcc---cCCCCCCC-CCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCC
Q 041145 62 ---RCDFE---FSDYPWPE-RDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLL 134 (522)
Q Consensus 62 ---~~~~~---~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 134 (522)
..+.. +.+.+... .......++..+.+.|.+.+.+.+..-.++++++|++++. +++
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~--~~~--------------- 174 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEV--DEE--------------- 174 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEE--CCC---------------
Confidence 00000 00110000 0001224566677888777776653225788999999987 321
Q ss_pred CCCCCEEEEEEeC----Ce-eEEEEECEEEEeeeccC
Q 041145 135 KGHPVWEVAVETN----QA-IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 135 ~~~~~~~v~~~~~----~~-~~~~~~d~vViAtG~~s 166 (522)
+....+|++++. ++ .+++++|+||-|.|.+|
T Consensus 175 -~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 175 -GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred -CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch
Confidence 023456777653 22 46899999999999986
No 167
>PLN02661 Putative thiazole synthesis
Probab=98.45 E-value=8e-07 Score=87.20 Aligned_cols=137 Identities=17% Similarity=0.277 Sum_probs=74.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--C-CCCcEEEccCCCCCc-ccCCCc-cCcccccCCC-CCcccCCCCCCCCCCCCCC---
Q 041145 11 SSKIGIIGAGISGIATAKQL--R-HYDPLVFEATNSIGG-VWKHCS-FNSTKLQTPR-CDFEFSDYPWPERDDASFP--- 81 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~-g~~v~v~e~~~~~GG-~w~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 81 (522)
..||+|||||++|+++|..| . |++|+|+|+...+|| .|.... +....+..+. ..+.--+.++... ..|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~--dgy~vv~ 169 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ--ENYVVIK 169 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC--CCeeEec
Confidence 46999999999999999999 3 799999999988865 664321 1111111111 1111112233221 1111
Q ss_pred ChHHHHHHHHHHH-HhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC-----eeEEEEE
Q 041145 82 SHVELLDYLHGYA-VHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ-----AIQWYGF 155 (522)
Q Consensus 82 ~~~~~~~yl~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~ 155 (522)
+..++...|...+ ++.++ .+..++.|+++...++ .+.++ --.|.+...++. +...+.+
T Consensus 170 ha~e~~stLi~ka~~~~gV--kI~~~t~V~DLI~~~g-rVaGV-------------Vvnw~~v~~~~~~~s~~dp~~I~A 233 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGD-RVGGV-------------VTNWALVAQNHDTQSCMDPNVMEA 233 (357)
T ss_pred chHHHHHHHHHHHHhcCCC--EEEeCeEeeeEEecCC-EEEEE-------------EeecchhhhccCCCCccceeEEEC
Confidence 2234444444433 33455 6777888888776211 10000 001222221211 1236899
Q ss_pred CEEEEeeecc
Q 041145 156 ELLVMCIGKF 165 (522)
Q Consensus 156 d~vViAtG~~ 165 (522)
++||+|||+.
T Consensus 234 kaVVlATGh~ 243 (357)
T PLN02661 234 KVVVSSCGHD 243 (357)
T ss_pred CEEEEcCCCC
Confidence 9999999965
No 168
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.44 E-value=1.9e-06 Score=87.93 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
+||+|||||+.|+++|.+| .|.+|+|+|+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 3899999999999999999 8999999999753
No 169
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.43 E-value=2.8e-06 Score=89.82 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
.+||+|||||+.|+++|..| .|++|+|+|+++..+|+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 56999999999999999999 89999999998654443
No 170
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.43 E-value=1.4e-06 Score=87.86 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CC--CCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RH--YDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g--~~v~v~e~~~~~G 45 (522)
.+||+|||||+.|+++|..| .+ ++|+|+||.+.+|
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 57999999999999999999 44 9999999999887
No 171
>PRK07208 hypothetical protein; Provisional
Probab=98.40 E-value=5.3e-07 Score=94.99 Aligned_cols=43 Identities=35% Similarity=0.577 Sum_probs=39.0
Q ss_pred cccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 8 VQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 8 ~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
||+.++|+|||||++||+||..| .|++|+|+|+++.+||.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 35567999999999999999999 79999999999999998765
No 172
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.40 E-value=3.7e-06 Score=88.85 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
.+||+|||||+.|+++|..| .|++|+|+|+.+-.+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQG 43 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 46999999999999999999 8999999999864444
No 173
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.38 E-value=2.7e-06 Score=87.75 Aligned_cols=32 Identities=44% Similarity=0.718 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
||+|||||+.|+++|.+| .|.+|+|+|+++.+
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 899999999999999999 79999999998743
No 174
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.37 E-value=4.7e-06 Score=87.46 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.7
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC--CCc
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNS--IGG 46 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~--~GG 46 (522)
...||||||+|++|++||..+ .|.+|+|+||.+. .||
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG 43 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG 43 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc
Confidence 356999999999999999999 8999999999874 455
No 175
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.36 E-value=1.7e-05 Score=74.83 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCcEEEECCCHHHHHHHHHh----CCCCcEEEccCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL----RHYDPLVFEATNS 43 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~ 43 (522)
..+|+|||||.+|+++|..+ ..-+|.|+|..++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 46899999999999999999 2348999998764
No 176
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.36 E-value=9.4e-06 Score=85.09 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=73.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++|+.+.+. +. ...++..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 215 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--------------------------------PG--EDAEVSK 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--------------------------------CC--CCHHHHH
Confidence 46899999999999999999 899999999976431 11 1234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|.+++. + .++..+...+++ ..++.+|.||+|+|. .
T Consensus 216 ~~~~~l~~~gi--~i~~~~~v~~i~~--~-------------------~~~v~v~~~~g~-~~~i~~D~vi~a~G~---~ 268 (461)
T TIGR01350 216 VVAKALKKKGV--KILTNTKVTAVEK--N-------------------DDQVVYENKGGE-TETLTGEKVLVAVGR---K 268 (461)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEE--e-------------------CCEEEEEEeCCc-EEEEEeCEEEEecCC---c
Confidence 66677777787 7899999999876 3 223444443331 246899999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 269 p~~~ 272 (461)
T TIGR01350 269 PNTE 272 (461)
T ss_pred ccCC
Confidence 6655
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=1.6e-05 Score=83.59 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++|+.+.+. +.+ ..++..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~~~--~~~~~~ 225 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--------------------------------PTE--DAELSK 225 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--------------------------------CcC--CHHHHH
Confidence 36899999999999999999 899999999975431 111 244666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|++++...+ ++...+...+++ .+++.+|.||+|+| ..
T Consensus 226 ~l~~~l~~~gI--~i~~~~~v~~i~~~~~-------------------~~~~~~~~~~g~-~~~i~~D~vi~a~G---~~ 280 (472)
T PRK05976 226 EVARLLKKLGV--RVVTGAKVLGLTLKKD-------------------GGVLIVAEHNGE-EKTLEADKVLVSVG---RR 280 (472)
T ss_pred HHHHHHHhcCC--EEEeCcEEEEEEEecC-------------------CCEEEEEEeCCc-eEEEEeCEEEEeeC---Cc
Confidence 77777777788 7889999999874111 111122222321 34689999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+.+
T Consensus 281 p~~~ 284 (472)
T PRK05976 281 PNTE 284 (472)
T ss_pred cCCC
Confidence 6654
No 178
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.33 E-value=7.2e-06 Score=84.18 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++++|||||+-|+-.|..+ .|.+|+|+|+.+.+- + ...+++.+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL--------------------------------p--~~D~ei~~ 218 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL--------------------------------P--GEDPEISK 218 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------C--cCCHHHHH
Confidence 46899999999999999999 899999999986541 1 12457888
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .++++++|+.++. .. +...++++++++. ++++|.|++|+| ..
T Consensus 219 ~~~~~l~~~gv--~i~~~~~v~~~~~--~~-------------------~~v~v~~~~g~~~-~~~ad~vLvAiG---R~ 271 (454)
T COG1249 219 ELTKQLEKGGV--KILLNTKVTAVEK--KD-------------------DGVLVTLEDGEGG-TIEADAVLVAIG---RK 271 (454)
T ss_pred HHHHHHHhCCe--EEEccceEEEEEe--cC-------------------CeEEEEEecCCCC-EEEeeEEEEccC---Cc
Confidence 88888887666 7889999999987 21 2245666665322 688999999999 56
Q ss_pred CCCCCC
Q 041145 169 PRMPAF 174 (522)
Q Consensus 169 p~~p~~ 174 (522)
|++..+
T Consensus 272 Pn~~~L 277 (454)
T COG1249 272 PNTDGL 277 (454)
T ss_pred cCCCCC
Confidence 877643
No 179
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.32 E-value=7.1e-06 Score=83.57 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. +... ..++..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l--------------------------------~~~~-~~~~~~ 187 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL--------------------------------ASLM-PPEVSS 187 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc--------------------------------chhC-CHHHHH
Confidence 35899999999999999999 799999999975431 0011 134556
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeecc
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
++....++.++ .+.++++|.+++. + .+.+.|.+.+++ ++.+|.||+|+|..
T Consensus 188 ~l~~~l~~~gV--~i~~~~~v~~i~~--~-------------------~~~~~v~~~~g~---~i~~D~vI~a~G~~ 238 (377)
T PRK04965 188 RLQHRLTEMGV--HLLLKSQLQGLEK--T-------------------DSGIRATLDSGR---SIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHHhCCC--EEEECCeEEEEEc--c-------------------CCEEEEEEcCCc---EEECCEEEECcCCC
Confidence 67777777887 7888999999876 3 234667776654 79999999999954
No 180
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.31 E-value=1.4e-05 Score=84.57 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
..||||||+|.+|++||..+ .|.+|+|+|+.+.+||.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 56999999999999999999 89999999999888763
No 181
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.31 E-value=2.4e-05 Score=82.04 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=75.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 217 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--------------------------------PG--EDKEISK 217 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--------------------------------Cc--CCHHHHH
Confidence 36899999999999999999 899999999976431 11 1245666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.++...++.++ .+.++++|++++. + .+...+.+.+++..+++.+|.||+|+|. .
T Consensus 218 ~l~~~l~~~gV--~i~~~~~V~~i~~--~-------------------~~~v~v~~~~gg~~~~i~~D~vi~a~G~---~ 271 (462)
T PRK06416 218 LAERALKKRGI--KIKTGAKAKKVEQ--T-------------------DDGVTVTLEDGGKEETLEADYVLVAVGR---R 271 (462)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEEE--e-------------------CCEEEEEEEeCCeeEEEEeCEEEEeeCC---c
Confidence 77777777787 7899999999976 3 2234555554432347899999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 272 p~~~ 275 (462)
T PRK06416 272 PNTE 275 (462)
T ss_pred cCCC
Confidence 6654
No 182
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=5.8e-07 Score=93.41 Aligned_cols=41 Identities=39% Similarity=0.646 Sum_probs=37.3
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
+++++|+|||||+|||+||++| .|++|+|+|.++.+||.-+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 3467999999999999999999 8999999999999999544
No 183
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.27 E-value=1.2e-05 Score=83.33 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHh-CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL-RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.|||+||..+ .|.+|+|+||.+..||
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC
Confidence 46999999999999999999 8999999999887665
No 184
>PRK07121 hypothetical protein; Validated
Probab=98.26 E-value=1.4e-05 Score=84.34 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
..||||||+|.+|++||.++ .|.+|+|+||.+..||.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 57999999999999999999 89999999999887763
No 185
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.26 E-value=1e-05 Score=83.66 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
||+|||+|.||++||..+ .|.+|+|+|+.+..||.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc
Confidence 799999999999999999 89999999999988773
No 186
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.25 E-value=1.9e-05 Score=82.52 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=34.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--C----CCCcEEEccCCCCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--R----HYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~----g~~v~v~e~~~~~GG~w~ 49 (522)
.++|+|||||+|||+||..| . |.+|+|+|+.+.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 46999999999999999999 2 689999999999998654
No 187
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.25 E-value=1.5e-05 Score=83.55 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=74.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 211 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--------------------------------PR--EEPEISA 211 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--------------------------------Cc--cCHHHHH
Confidence 36899999999999999999 899999999975431 11 1234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|.+++. + .+...+++...++.+++.+|.||+|+| ..
T Consensus 212 ~l~~~l~~~gV--~i~~~~~V~~i~~--~-------------------~~~~~v~~~~~~~~~~i~~D~ViiA~G---~~ 265 (463)
T TIGR02053 212 AVEEALAEEGI--EVVTSAQVKAVSV--R-------------------GGGKIITVEKPGGQGEVEADELLVATG---RR 265 (463)
T ss_pred HHHHHHHHcCC--EEEcCcEEEEEEE--c-------------------CCEEEEEEEeCCCceEEEeCEEEEeEC---CC
Confidence 77777777788 7889999999876 2 123445554322234799999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 266 p~~~ 269 (463)
T TIGR02053 266 PNTD 269 (463)
T ss_pred cCCC
Confidence 6654
No 188
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.24 E-value=8e-06 Score=87.46 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
..+|+|||||++||++|..| .|++|+|||+.+
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46999999999999999999 899999999975
No 189
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=3.4e-05 Score=80.67 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll--------------------------------~~--~d~e~~~ 215 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL--------------------------------PG--EDEDIAH 215 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------cc--ccHHHHH
Confidence 35899999999999999998 789999999975431 11 1245667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|++++. + ... +.+..++...++.||.||+|+| ..
T Consensus 216 ~l~~~L~~~GI--~i~~~~~V~~i~~--~-------------------~~~--v~~~~~g~~~~i~~D~vivA~G---~~ 267 (458)
T PRK06912 216 ILREKLENDGV--KIFTGAALKGLNS--Y-------------------KKQ--ALFEYEGSIQEVNAEFVLVSVG---RK 267 (458)
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEE--c-------------------CCE--EEEEECCceEEEEeCEEEEecC---Cc
Confidence 77777777788 7889999999875 2 122 3333322234689999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 268 p~~~ 271 (458)
T PRK06912 268 PRVQ 271 (458)
T ss_pred cCCC
Confidence 6654
No 190
>PRK12839 hypothetical protein; Provisional
Probab=98.23 E-value=3.2e-05 Score=82.75 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=38.3
Q ss_pred CcccccccccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 1 MASAQNHVQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 1 m~~~~~~~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
|+.+... ..||+|||+|.+|+++|..+ .|.+|+|+|+...+||...
T Consensus 1 ~~~~~~~---~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 1 MTPSMTH---TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CCCCcCC---cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 5544442 56999999999999999999 8999999999988887644
No 191
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.22 E-value=4.1e-05 Score=82.23 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=37.6
Q ss_pred CcccccccccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 1 MASAQNHVQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 1 m~~~~~~~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
|+-.........||||||+|.+||+||..+ .|.+|+|+|+.+..||.
T Consensus 1 ~~~~~~~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 1 MSVDEQNFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CCCCCCCccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 333333333367999999999999999999 89999999999887764
No 192
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=4.8e-05 Score=79.95 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 228 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL--------------------------------AA--ADEQVAK 228 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC--------------------------------Cc--CCHHHHH
Confidence 46999999999999999998 789999999975431 11 1245556
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEEEECEEEEeeeccCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWYGFELLVMCIGKFGD 167 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~d~vViAtG~~s~ 167 (522)
.+....++.++ .+..+++|++++. + .+...+.+.++++ ..++.+|.|++|+| .
T Consensus 229 ~~~~~l~~~gi--~i~~~~~v~~i~~--~-------------------~~~v~v~~~~~~g~~~~i~~D~vl~a~G---~ 282 (475)
T PRK06327 229 EAAKAFTKQGL--DIHLGVKIGEIKT--G-------------------GKGVSVAYTDADGEAQTLEVDKLIVSIG---R 282 (475)
T ss_pred HHHHHHHHcCc--EEEeCcEEEEEEE--c-------------------CCEEEEEEEeCCCceeEEEcCEEEEccC---C
Confidence 66666667777 7888999999976 3 1233455544322 34799999999999 4
Q ss_pred CCCCC
Q 041145 168 IPRMP 172 (522)
Q Consensus 168 ~p~~p 172 (522)
.|+.+
T Consensus 283 ~p~~~ 287 (475)
T PRK06327 283 VPNTD 287 (475)
T ss_pred ccCCC
Confidence 57665
No 193
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.20 E-value=1e-05 Score=82.04 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
+||+|||||++|+++|.+| .|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3899999999999999999 8999999999753
No 194
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.20 E-value=1.8e-05 Score=82.38 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~G 45 (522)
..||+|||||++|+++|..| .+.+|+|+||.+.+|
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 35999999999999999999 379999999955665
No 195
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.20 E-value=9.6e-06 Score=83.17 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+.+ . ....++..
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~--~~~~~~~~ 190 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG-------------------------------R--NAPPPVQR 190 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh-------------------------------h--hcCHHHHH
Confidence 35899999999999999999 7999999999764311 0 11235667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeecc
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
++....++.++ .+.++++|++++. + +...+.+.+++ ++.+|.||+|+|..
T Consensus 191 ~l~~~l~~~GV--~i~~~~~V~~i~~--~--------------------~~~~v~l~~g~---~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 191 YLLQRHQQAGV--RILLNNAIEHVVD--G--------------------EKVELTLQSGE---TLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHHHCCC--EEEeCCeeEEEEc--C--------------------CEEEEEECCCC---EEECCEEEECCCCC
Confidence 77777777888 7888999998865 2 23445565554 79999999999943
No 196
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.20 E-value=1.9e-05 Score=82.51 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--C-C-CCcEEEccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--R-H-YDPLVFEATNSI 44 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~-g-~~v~v~e~~~~~ 44 (522)
.+||+|||||+.|+++|..| . + .+|+|+|+.+.+
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~ 82 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDF 82 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcch
Confidence 47999999999999999999 2 3 699999998643
No 197
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.19 E-value=5.9e-06 Score=86.45 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--C--CCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--R--HYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~ 42 (522)
..||+|||||+.|+++|.+| . |.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 46999999999999999999 4 89999999865
No 198
>PRK06370 mercuric reductase; Validated
Probab=98.18 E-value=5e-05 Score=79.60 Aligned_cols=102 Identities=14% Similarity=0.215 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 216 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL--------------------------------PR--EDEDVAA 216 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999976431 11 1234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++....++.++ .+.++++|.+++. + ++...|.+...++..++.+|.||+|+| ..
T Consensus 217 ~l~~~l~~~GV--~i~~~~~V~~i~~--~-------------------~~~~~v~~~~~~~~~~i~~D~Vi~A~G---~~ 270 (463)
T PRK06370 217 AVREILEREGI--DVRLNAECIRVER--D-------------------GDGIAVGLDCNGGAPEITGSHILVAVG---RV 270 (463)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEE--c-------------------CCEEEEEEEeCCCceEEEeCEEEECcC---CC
Confidence 77777777888 7889999999976 2 122345443222234689999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 271 pn~~ 274 (463)
T PRK06370 271 PNTD 274 (463)
T ss_pred cCCC
Confidence 6654
No 199
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.18 E-value=1.9e-05 Score=82.09 Aligned_cols=98 Identities=20% Similarity=0.308 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. ...++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~~~~~~~ 202 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL--------------------------------PR--EEPSVAA 202 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC--------------------------------CC--CCHHHHH
Confidence 45899999999999999999 899999999976431 11 1244566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+.+..++.++ .+.++++|++++. + .+...++ .++ .++.+|.||+|+| ..
T Consensus 203 ~~~~~l~~~GI--~i~~~~~V~~i~~--~-------------------~~~v~v~-~~g---~~i~~D~viva~G---~~ 252 (438)
T PRK07251 203 LAKQYMEEDGI--TFLLNAHTTEVKN--D-------------------GDQVLVV-TED---ETYRFDALLYATG---RK 252 (438)
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEe--c-------------------CCEEEEE-ECC---eEEEcCEEEEeeC---CC
Confidence 67777778888 7888999999976 2 1222333 223 2799999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 253 p~~~ 256 (438)
T PRK07251 253 PNTE 256 (438)
T ss_pred CCcc
Confidence 6654
No 200
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.17 E-value=1.4e-05 Score=80.00 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~G 45 (522)
..|||+||||+.|.+++..| ...+|.||||.+.++
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 56999999999999999888 678999999998876
No 201
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.17 E-value=2.4e-06 Score=85.16 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=69.2
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEE-ccCCCCCcccCCCccCcccccC-----------CCCCcccCC-----CCC-
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVF-EATNSIGGVWKHCSFNSTKLQT-----------PRCDFEFSD-----YPW- 72 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~-e~~~~~GG~w~~~~~~~~~~~~-----------~~~~~~~~~-----~~~- 72 (522)
||+|||||.||+.||.++ .|.+|+++ .+.+.+|..- +.|++.-.- ...+....| +-+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~---Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS---CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S---SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc---chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 699999999999999999 99999999 4555555432 222222110 000000000 000
Q ss_pred -----CC-CCCCCCCChHHHHHHHHHHHHhcC-CcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEE
Q 041145 73 -----PE-RDDASFPSHVELLDYLHGYAVHFD-VLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVE 145 (522)
Q Consensus 73 -----~~-~~~~~~~~~~~~~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (522)
|. +..+.-.++..+..++++.++... + .+ ++.+|+++.. +. ...+-|.+.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl--~i-~~~~V~~l~~--e~------------------~~v~GV~~~ 134 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNL--TI-IQGEVTDLIV--EN------------------GKVKGVVTK 134 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTE--EE-EES-EEEEEE--CT------------------TEEEEEEET
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCe--EE-EEcccceEEe--cC------------------CeEEEEEeC
Confidence 11 100123678888888888887643 3 33 4778999876 31 223345555
Q ss_pred eCCeeEEEEECEEEEeeecc
Q 041145 146 TNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 146 ~~~~~~~~~~d~vViAtG~~ 165 (522)
++ ..+.+|.||+|||.+
T Consensus 135 ~g---~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 135 DG---EEIEADAVVLATGTF 151 (392)
T ss_dssp TS---EEEEECEEEE-TTTG
T ss_pred CC---CEEecCEEEEecccc
Confidence 55 379999999999954
No 202
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.17 E-value=2.4e-05 Score=75.67 Aligned_cols=146 Identities=22% Similarity=0.267 Sum_probs=100.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++++|||||.-||..+--. .|-+|+++|-.+.+||.. ..|+..
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m----------------------------------D~Eisk 256 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM----------------------------------DGEISK 256 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc----------------------------------CHHHHH
Confidence 46899999999999998887 899999999988876542 235777
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe--eEEEEECEEEEeeeccC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA--IQWYGFELLVMCIGKFG 166 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~d~vViAtG~~s 166 (522)
.++.+..+.++ ...++++|+.+...+ ++...|++.+..+ .+++++|.|++|+|
T Consensus 257 ~~qr~L~kQgi--kF~l~tkv~~a~~~~--------------------dg~v~i~ve~ak~~k~~tle~DvlLVsiG--- 311 (506)
T KOG1335|consen 257 AFQRVLQKQGI--KFKLGTKVTSATRNG--------------------DGPVEIEVENAKTGKKETLECDVLLVSIG--- 311 (506)
T ss_pred HHHHHHHhcCc--eeEeccEEEEeeccC--------------------CCceEEEEEecCCCceeEEEeeEEEEEcc---
Confidence 77888888888 688899999998833 3456677766433 67899999999999
Q ss_pred CCCCCCCC--CCCCCcc-ccCCceeeccccCCCchhhhhhccCCCeEEEECCCCCHHHHHHHH
Q 041145 167 DIPRMPAF--PANKGEE-IFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYRKSAIDLAVEC 226 (522)
Q Consensus 167 ~~p~~p~~--p~~~G~~-~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G~sg~dia~~l 226 (522)
.+|++-.+ .. .|++ ++.|++.--.+|.. +--+|-.||-=.-|-=+|...
T Consensus 312 RrP~t~GLgle~-iGi~~D~r~rv~v~~~f~t----------~vP~i~~IGDv~~gpMLAhkA 363 (506)
T KOG1335|consen 312 RRPFTEGLGLEK-IGIELDKRGRVIVNTRFQT----------KVPHIYAIGDVTLGPMLAHKA 363 (506)
T ss_pred CcccccCCChhh-cccccccccceeccccccc----------cCCceEEecccCCcchhhhhh
Confidence 55766432 11 0222 34555554444433 112566777555444444433
No 203
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.16 E-value=1.8e-05 Score=83.33 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.|||+||..+ .|. |+|+|+.+..||
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g 38 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG 38 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC
Confidence 35999999999999999999 676 999999876554
No 204
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.15 E-value=3.7e-05 Score=81.93 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.|||+||..+ .|.+|+|+|+....||
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 57999999999999999999 7999999999876654
No 205
>PLN02985 squalene monooxygenase
Probab=98.15 E-value=3.1e-05 Score=81.70 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.+||+|||||++|+++|..| .|++|+|+|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 56999999999999999999 899999999975
No 206
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.14 E-value=2e-05 Score=83.97 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
.+||+|||||+.|+++|..| .|++|+|+|+++-
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 46999999999999999999 8999999999753
No 207
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.13 E-value=2.9e-05 Score=81.72 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=72.5
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCccc----------ccCCCCC---------cccCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTK----------LQTPRCD---------FEFSDY 70 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~----------~~~~~~~---------~~~~~~ 70 (522)
+||+|||||++|+.+|..+ .|.+|+|+|+....+|... +.|... +...... ..|...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~--c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~l 78 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCS--CNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVL 78 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCC--ccccccccccchhhhhhhcccchHHHHHHhhceeheec
Confidence 4899999999999999999 7999999999754333211 111110 0000000 001100
Q ss_pred -----CCCCCCCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEE
Q 041145 71 -----PWPERDDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVE 145 (522)
Q Consensus 71 -----~~~~~~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (522)
|.. +....-..+..+...++..+++.+. ...+..+|+.+.. +.+ .....|.+.
T Consensus 79 n~skgpAV-~~~RaQVDr~~y~~~L~e~Le~~pg--V~Ile~~Vv~li~--e~~-----------------g~V~GV~t~ 136 (617)
T TIGR00136 79 NSSKGPAV-RATRAQIDKVLYRKAMRNALENQPN--LSLFQGEVEDLIL--EDN-----------------DEIKGVVTQ 136 (617)
T ss_pred ccCCCCcc-cccHHhCCHHHHHHHHHHHHHcCCC--cEEEEeEEEEEEE--ecC-----------------CcEEEEEEC
Confidence 110 1101134566677777777776632 1334667777754 211 123346665
Q ss_pred eCCeeEEEEECEEEEeeecc
Q 041145 146 TNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 146 ~~~~~~~~~~d~vViAtG~~ 165 (522)
++. .+.+|.||+|||.+
T Consensus 137 ~G~---~I~Ad~VILATGtf 153 (617)
T TIGR00136 137 DGL---KFRAKAVIITTGTF 153 (617)
T ss_pred CCC---EEECCEEEEccCcc
Confidence 553 79999999999966
No 208
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.13 E-value=1.3e-05 Score=78.24 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=64.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--------CCCCcEEEccCCCCCcccCCC----------ccCccc-------ccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--------RHYDPLVFEATNSIGGVWKHC----------SFNSTK-------LQTPRCDF 65 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--------~g~~v~v~e~~~~~GG~w~~~----------~~~~~~-------~~~~~~~~ 65 (522)
..||||||||||||+||++| ..++|+|+|+...+||.-... .+|..+ ..+.++.+
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 46999999999999999998 467999999999999743320 122211 12223333
Q ss_pred ccC----CCCCCC----CCC-CCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEE
Q 041145 66 EFS----DYPWPE----RDD-ASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRH 114 (522)
Q Consensus 66 ~~~----~~~~~~----~~~-~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~ 114 (522)
.|. .+|.|. ... .-..+-.++..||-+-|+.+|+ .|.-+..+..+-.
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~Gv--EiyPg~aaSevly 211 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGV--EIYPGFAASEVLY 211 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCc--eeccccchhheeE
Confidence 332 122221 111 2235778899999999999987 4554444555554
No 209
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=1.8e-05 Score=84.94 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~GG 46 (522)
..||+|||||.||++||.++ . |.+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 56999999999999999999 3 489999999876553
No 210
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.12 E-value=2.3e-06 Score=89.92 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=40.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCccc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTK 57 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~ 57 (522)
.+||||||||++||+||..| .|++|+|+||++.+||..+...+.+.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~ 51 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFR 51 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceE
Confidence 56999999999999999999 999999999999999976653333443
No 211
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.12 E-value=8.8e-05 Score=77.82 Aligned_cols=102 Identities=23% Similarity=0.188 Sum_probs=74.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+|+|+.+.+. +.+ ..++..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--------------------------------~~~--d~~~~~ 217 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--------------------------------PNE--DAEVSK 217 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------Ccc--CHHHHH
Confidence 46899999999999999999 889999999875431 111 244666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEEEECEEEEeeeccCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWYGFELLVMCIGKFGD 167 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~d~vViAtG~~s~ 167 (522)
.+....++.++ .+.++++|++++. + .+...+.+.+.++ ..++.+|.||+|+| .
T Consensus 218 ~l~~~l~~~gV--~i~~~~~v~~i~~--~-------------------~~~~~v~~~~~~g~~~~i~~D~vi~a~G---~ 271 (466)
T PRK07818 218 EIAKQYKKLGV--KILTGTKVESIDD--N-------------------GSKVTVTVSKKDGKAQELEADKVLQAIG---F 271 (466)
T ss_pred HHHHHHHHCCC--EEEECCEEEEEEE--e-------------------CCeEEEEEEecCCCeEEEEeCEEEECcC---c
Confidence 77777777888 7999999999976 2 2234455542112 34799999999999 4
Q ss_pred CCCCC
Q 041145 168 IPRMP 172 (522)
Q Consensus 168 ~p~~p 172 (522)
.|+..
T Consensus 272 ~pn~~ 276 (466)
T PRK07818 272 APRVE 276 (466)
T ss_pred ccCCC
Confidence 46654
No 212
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.12 E-value=1.6e-05 Score=78.25 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G 45 (522)
..+|+|||||.+|+++|..| .|++|+|+|++.++-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 35899999999999999999 999999999987764
No 213
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.12 E-value=2.9e-05 Score=74.08 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEE
Q 041145 79 SFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELL 158 (522)
Q Consensus 79 ~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~v 158 (522)
.+....+...-++.++++.|. .++.+.+|..+...+++ ...-.|.+.++. .+.++++
T Consensus 148 Gvi~a~kslk~~~~~~~~~G~--i~~dg~~v~~~~~~~e~------------------~~~v~V~Tt~gs---~Y~akki 204 (399)
T KOG2820|consen 148 GVINAAKSLKALQDKARELGV--IFRDGEKVKFIKFVDEE------------------GNHVSVQTTDGS---IYHAKKI 204 (399)
T ss_pred cEeeHHHHHHHHHHHHHHcCe--EEecCcceeeEeeccCC------------------CceeEEEeccCC---eeecceE
Confidence 455677788889999999997 78899999988874321 122345555553 5999999
Q ss_pred EEeeeccCCCCCCCC
Q 041145 159 VMCIGKFGDIPRMPA 173 (522)
Q Consensus 159 ViAtG~~s~~p~~p~ 173 (522)
|+++|++ ....+|.
T Consensus 205 I~t~GaW-i~klL~~ 218 (399)
T KOG2820|consen 205 IFTVGAW-INKLLPT 218 (399)
T ss_pred EEEecHH-HHhhcCc
Confidence 9999987 4445553
No 214
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=5.2e-05 Score=81.73 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||||.||++||..+ .|.+|+|+||....+|
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 46999999999999999999 7899999999865443
No 215
>PRK06116 glutathione reductase; Validated
Probab=98.12 E-value=3.3e-05 Score=80.65 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------~~--~~~~~~~ 212 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL--------------------------------RG--FDPDIRE 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999875321 11 1235666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|.+++. ++ ++...|.+.++. ++.+|.||+|+| ..
T Consensus 213 ~l~~~L~~~GV--~i~~~~~V~~i~~--~~------------------~g~~~v~~~~g~---~i~~D~Vv~a~G---~~ 264 (450)
T PRK06116 213 TLVEEMEKKGI--RLHTNAVPKAVEK--NA------------------DGSLTLTLEDGE---TLTVDCLIWAIG---RE 264 (450)
T ss_pred HHHHHHHHCCc--EEECCCEEEEEEE--cC------------------CceEEEEEcCCc---EEEeCEEEEeeC---CC
Confidence 77777778888 7889999999986 21 223556655553 789999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 265 p~~~ 268 (450)
T PRK06116 265 PNTD 268 (450)
T ss_pred cCCC
Confidence 6654
No 216
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.11 E-value=1.8e-05 Score=86.61 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
.+|+|||||++|+++|.+| .|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 4899999999999999999 89999999998544
No 217
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.10 E-value=3.3e-05 Score=80.94 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=73.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++|+.+.+. +. -..++..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 220 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL--------------------------------SF--LDDEISD 220 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--------------------------------Cc--CCHHHHH
Confidence 46899999999999999999 899999999976431 11 1244566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|++++. + .+.+.+++.++. ++.+|.||+|+|. .
T Consensus 221 ~l~~~l~~~gI--~v~~~~~v~~i~~--~-------------------~~~~~v~~~~g~---~i~~D~vi~a~G~---~ 271 (461)
T PRK05249 221 ALSYHLRDSGV--TIRHNEEVEKVEG--G-------------------DDGVIVHLKSGK---KIKADCLLYANGR---T 271 (461)
T ss_pred HHHHHHHHcCC--EEEECCEEEEEEE--e-------------------CCeEEEEECCCC---EEEeCEEEEeecC---C
Confidence 77777777777 7888999999876 2 223556554443 6899999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 272 p~~~ 275 (461)
T PRK05249 272 GNTD 275 (461)
T ss_pred cccc
Confidence 6654
No 218
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=4.1e-05 Score=81.78 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHh-CCCCcEEEccCCC-CCc
Q 041145 11 SSKIGIIGAGISGIATAKQL-RHYDPLVFEATNS-IGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~-~GG 46 (522)
..||+|||+|.||++||..+ .|.+|+|+|+.+. .||
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A~~G~~VilleK~~~~~gG 44 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSG 44 (543)
T ss_pred ccCEEEECccHHHHHHHHHHhcCCCEEEEEccCCCCCc
Confidence 46999999999999999999 8999999999764 444
No 219
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.09 E-value=2.5e-05 Score=80.51 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=28.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--C-CC-CcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--R-HY-DPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~-g~-~v~v~e~~~ 42 (522)
.+||+|||||..|+++|.+| . |. +|+|+|+..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 56999999999999999999 3 75 899999975
No 220
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.08 E-value=5e-05 Score=80.34 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHh-CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL-RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~~GG~ 47 (522)
..||+|||+|.||++||.++ .|.+|+|+|+.+..||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCCCC
Confidence 46999999999999999999 88999999998866553
No 221
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.08 E-value=3.3e-05 Score=80.89 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIG 45 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~G 45 (522)
||+|||||++|+++|..| . |.+|+|+|+.+.+|
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 899999999999999999 3 89999999976443
No 222
>PRK08275 putative oxidoreductase; Provisional
Probab=98.08 E-value=2.1e-05 Score=84.22 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSI 44 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~ 44 (522)
..||+|||||.||++||..+ . |.+|+|+||.+..
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 46999999999999999999 3 6899999998753
No 223
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.08 E-value=3.8e-05 Score=80.38 Aligned_cols=31 Identities=29% Similarity=0.651 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
||+|||||.|||+||..+ .|.+|+|+|+.+.
T Consensus 3 DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 3 KVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred eEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 999999999999999999 8999999999764
No 224
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.07 E-value=4.2e-05 Score=79.72 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=73.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..+ .|.+|+++++.+.+. +. ...++..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 211 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL--------------------------------RG--FDDDMRA 211 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC--------------------------------cc--cCHHHHH
Confidence 45899999999999999998 889999999875420 11 1245666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|.+++. + .+...|++.++. ++.+|.||+|+| ..
T Consensus 212 ~l~~~l~~~gV--~i~~~~~v~~i~~--~-------------------~~~~~v~~~~g~---~i~~D~viva~G---~~ 262 (446)
T TIGR01424 212 LLARNMEGRGI--RIHPQTSLTSITK--T-------------------DDGLKVTLSHGE---EIVADVVLFATG---RS 262 (446)
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEE--c-------------------CCeEEEEEcCCc---EeecCEEEEeeC---CC
Confidence 77777777887 7889999999976 2 123455554443 799999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 263 pn~~ 266 (446)
T TIGR01424 263 PNTK 266 (446)
T ss_pred cCCC
Confidence 6653
No 225
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=8.3e-05 Score=80.04 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.|||+||..+ .|.+|+|+|+....+|
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 46999999999999999998 7999999999765443
No 226
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=0.00011 Score=79.22 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=32.9
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
|++.||+|||+|.|||+||..+ .|.+|+|+|+.+..||
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 3456999999999999999999 7999999999876543
No 227
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.04 E-value=4.5e-05 Score=82.49 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
.+||+|||||+.|.++|..| .|++|+|+|+++-.+|+
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 46999999999999999999 89999999998544343
No 228
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.03 E-value=7.2e-05 Score=78.40 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..+ .|.+|+++|+.+.+. +.+ ..++..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il--------------------------------~~~--d~~~~~ 219 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC--------------------------------PGT--DTETAK 219 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC--------------------------------CCC--CHHHHH
Confidence 46899999999999999998 899999999975431 111 234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEe--CCeeEEEEECEEEEeeeccC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVET--NQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~d~vViAtG~~s 166 (522)
++....++.++ .+.++++|++++. + .+...+++.. ++..+++.+|.||+|+|
T Consensus 220 ~l~~~l~~~gV--~i~~~~~V~~i~~--~-------------------~~~v~v~~~~~~~g~~~~i~~D~vi~a~G--- 273 (466)
T PRK06115 220 TLQKALTKQGM--KFKLGSKVTGATA--G-------------------ADGVSLTLEPAAGGAAETLQADYVLVAIG--- 273 (466)
T ss_pred HHHHHHHhcCC--EEEECcEEEEEEE--c-------------------CCeEEEEEEEcCCCceeEEEeCEEEEccC---
Confidence 67777777788 7899999999976 2 1234455442 11134799999999999
Q ss_pred CCCCCC
Q 041145 167 DIPRMP 172 (522)
Q Consensus 167 ~~p~~p 172 (522)
..|+..
T Consensus 274 ~~pn~~ 279 (466)
T PRK06115 274 RRPYTQ 279 (466)
T ss_pred Cccccc
Confidence 446653
No 229
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.02 E-value=7.4e-05 Score=80.33 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
||+|||+|.||++||..+ .|.+|+|+|+....||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 699999999999999999 8999999999875543
No 230
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.02 E-value=4e-05 Score=79.23 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
+|+|||||.+|+++|.+| .|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 799999999999999999 89999999997544
No 231
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.01 E-value=4.9e-05 Score=76.30 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=88.2
Q ss_pred cEEEECCCHHHHHHHHHh--------C-------CCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--------R-------HYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDD 77 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--------~-------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (522)
+|+|||||+.|+.+|-+| . .++|+++|+.+.+-
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-------------------------------- 204 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-------------------------------- 204 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--------------------------------
Confidence 799999999999999888 1 13889999987641
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECE
Q 041145 78 ASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFEL 157 (522)
Q Consensus 78 ~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~ 157 (522)
+. -.+++..|.+...++.|+ .+.+++.|++++. + .|++.+++ +++.++.
T Consensus 205 p~--~~~~l~~~a~~~L~~~GV--~v~l~~~Vt~v~~--~-----------------------~v~~~~g~--~~I~~~t 253 (405)
T COG1252 205 PM--FPPKLSKYAERALEKLGV--EVLLGTPVTEVTP--D-----------------------GVTLKDGE--EEIPADT 253 (405)
T ss_pred cC--CCHHHHHHHHHHHHHCCC--EEEcCCceEEECC--C-----------------------cEEEccCC--eeEecCE
Confidence 22 234677899999999999 8999999999976 3 27777665 1599999
Q ss_pred EEEeeeccCCCCCCCCCCCCCCcc-ccCCceeeccccCCCchhhhhhccCCCeEEEECCC
Q 041145 158 LVMCIGKFGDIPRMPAFPANKGEE-IFGGKVLHSMDYSKLDKEAATELLEGKKVAIIGYR 216 (522)
Q Consensus 158 vViAtG~~s~~p~~p~~p~~~G~~-~f~g~~~hs~~~~~~~~~~~~~~~~~k~V~VIG~G 216 (522)
+|-|+|.. ..|-.-.+- |.+ +-.|+++--..... .....|-++|--
T Consensus 254 vvWaaGv~-a~~~~~~l~---~~e~dr~Grl~V~~~L~~---------~~~~~IFa~GD~ 300 (405)
T COG1252 254 VVWAAGVR-ASPLLKDLS---GLETDRRGRLVVNPTLQV---------PGHPDIFAAGDC 300 (405)
T ss_pred EEEcCCCc-CChhhhhcC---hhhhccCCCEEeCCCccc---------CCCCCeEEEecc
Confidence 99999976 333332222 333 22355544343332 223458888743
No 232
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.01 E-value=6.6e-05 Score=80.33 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
..||+|||+|++|+++|..+ .|.+|+|+|+.+.+||.
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 45999999999999999999 89999999999887764
No 233
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.01 E-value=5.3e-05 Score=78.56 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|++|+.+|..| .|.+|+++++.+.+.. +.+ ..++..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-------------------------------~~~--~~~~~~ 183 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-------------------------------KLF--DEEMNQ 183 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------ccc--CHHHHH
Confidence 36899999999999999998 7899999998754300 111 245667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++....++.++ .+.++++|.+++. + +.. +.+.+++ ++.||.||+|+|. .
T Consensus 184 ~~~~~l~~~gV--~v~~~~~v~~i~~--~--------------------~~~-v~~~~g~---~i~~D~vi~a~G~---~ 232 (427)
T TIGR03385 184 IVEEELKKHEI--NLRLNEEVDSIEG--E--------------------ERV-KVFTSGG---VYQADMVILATGI---K 232 (427)
T ss_pred HHHHHHHHcCC--EEEeCCEEEEEec--C--------------------CCE-EEEcCCC---EEEeCEEEECCCc---c
Confidence 77777788888 7888999999875 2 222 3444443 7999999999994 3
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+.+
T Consensus 233 p~~~ 236 (427)
T TIGR03385 233 PNSE 236 (427)
T ss_pred CCHH
Confidence 5543
No 234
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.01 E-value=7.4e-05 Score=80.62 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSI 44 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~ 44 (522)
..||+|||||.|||+||..+ . |.+|+|+||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 46999999999999999999 5 8999999998643
No 235
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=5e-05 Score=81.73 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHh-CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL-RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~~GG 46 (522)
..||+|||||.||++||.++ .+.+|+|+||....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 45999999999999999999 5589999999865444
No 236
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=8.2e-05 Score=78.05 Aligned_cols=100 Identities=14% Similarity=0.240 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (522)
++|+|||||+.|+.+|..| .|.+|+|+|+.+.+. +. ...++..+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il--------------------------------~~--~d~~~~~~ 220 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI--------------------------------PA--ADKDIVKV 220 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--------------------------------Cc--CCHHHHHH
Confidence 6899999999999999999 899999999976431 11 12345555
Q ss_pred HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEEEECEEEEeeeccCCC
Q 041145 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 90 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~d~vViAtG~~s~~ 168 (522)
+....++. + .+.++++|+.++. + .+...+++.++++ .+++.+|.||+|+| ..
T Consensus 221 ~~~~l~~~-v--~i~~~~~v~~i~~--~-------------------~~~~~v~~~~~~~~~~~i~~D~vi~a~G---~~ 273 (471)
T PRK06467 221 FTKRIKKQ-F--NIMLETKVTAVEA--K-------------------EDGIYVTMEGKKAPAEPQRYDAVLVAVG---RV 273 (471)
T ss_pred HHHHHhhc-e--EEEcCCEEEEEEE--c-------------------CCEEEEEEEeCCCcceEEEeCEEEEeec---cc
Confidence 55555444 4 6788999999876 2 1234455544322 34699999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 274 pn~~ 277 (471)
T PRK06467 274 PNGK 277 (471)
T ss_pred ccCC
Confidence 6664
No 237
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.00 E-value=7.8e-05 Score=77.08 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=35.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
..||+|||||+.|+.+|..+ .|++|+++|+++--.|+-.
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 67999999999999999999 9999999999987766654
No 238
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.99 E-value=4.9e-05 Score=79.31 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=71.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+.. ..+ ..++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~~--~~~~~~ 195 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP-------------------------------DSF--DKEITD 195 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------hhc--CHHHHH
Confidence 36899999999999999999 7899999998653210 111 356777
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++.+.+++.++ .+.++++|++++. + .....+.++ ++ ++.+|.||+|+|. .
T Consensus 196 ~l~~~l~~~gI--~v~~~~~v~~i~~--~-------------------~~~~~v~~~-~~---~i~~d~vi~a~G~---~ 245 (444)
T PRK09564 196 VMEEELRENGV--ELHLNEFVKSLIG--E-------------------DKVEGVVTD-KG---EYEADVVIVATGV---K 245 (444)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEec--C-------------------CcEEEEEeC-CC---EEEcCEEEECcCC---C
Confidence 88888888888 7889999999864 2 122233333 22 6899999999994 3
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+.+
T Consensus 246 p~~~ 249 (444)
T PRK09564 246 PNTE 249 (444)
T ss_pred cCHH
Confidence 5543
No 239
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.99 E-value=7.2e-05 Score=80.14 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.||++||..+ .|.+|+|+||.+..+|
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 46999999999999999999 7999999999865544
No 240
>PLN02507 glutathione reductase
Probab=97.99 E-value=7e-05 Score=78.97 Aligned_cols=99 Identities=8% Similarity=0.081 Sum_probs=73.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..+ .|.+|+|+++.+.+- +. ...++..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 248 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL--------------------------------RG--FDDEMRA 248 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC--------------------------------cc--cCHHHHH
Confidence 35899999999999999998 789999999875320 11 1245667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++....++.++ .+.++++|.+++. + .+...+.+.++. ++.+|.|++|+|. .
T Consensus 249 ~l~~~l~~~GI--~i~~~~~V~~i~~--~-------------------~~~~~v~~~~g~---~i~~D~vl~a~G~---~ 299 (499)
T PLN02507 249 VVARNLEGRGI--NLHPRTNLTQLTK--T-------------------EGGIKVITDHGE---EFVADVVLFATGR---A 299 (499)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEE--e-------------------CCeEEEEECCCc---EEEcCEEEEeecC---C
Confidence 77777778888 7889999999875 2 123345544443 6999999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 300 pn~~ 303 (499)
T PLN02507 300 PNTK 303 (499)
T ss_pred CCCC
Confidence 6654
No 241
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.98 E-value=2.8e-05 Score=76.34 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=84.1
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCceeecCCCC---CCcchHHHHHhHhhhhccCCCCc-hhHHHH
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWTLPSYRI---WGLPFFLFYSTRSSQFLHPRPNL-GFLRTF 283 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~~~---~~~p~~~~~~~r~~~~~~~~~~~-~~~~~~ 283 (522)
..|+|||+|++|+=.|..+++.+.+ |+++.+.+.. -.+... .+.++..... ..+++.+-|+. .+++..
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~-----V~lid~~~k~-GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRR-----VLLIDKGPKL-GRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCE-----EEEEecCccc-cceeEecCCCCcccccccc--HHHHHHhCCCcchHHHHH
Confidence 4699999999999999999988654 9999887641 111111 0122221111 22333333322 233322
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhcCCcccCCCCCCCccccccccccccccCcchhhhcccCcEEEEeCc-eeEEecCc---
Q 041145 284 LCSILSPMRKAISKFIESYLVWKLPLVKFGLKPDHPFEEDYASCQMAILPENFFSEAEKGNILFKRAS-KWWFWSGG--- 359 (522)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~v~~~~-i~~~~~~~--- 359 (522)
+..+. .+.+-.+++++--....+..-+|-|... +...+=+.++..+++.+|++++.. |.+++.+.
T Consensus 76 l~~ft---~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sd--------kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f 144 (408)
T COG2081 76 LARFT---PEDFIDWVEGLGIALKEEDLGRMFPDSD--------KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF 144 (408)
T ss_pred HHhCC---HHHHHHHHHhcCCeeEEccCceecCCcc--------chHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE
Confidence 22211 2222222222111100111111222210 111223456677889999999987 88887653
Q ss_pred -EEecCCceeeccEEEEeccCCC
Q 041145 360 -IEFEDKSKLEADVVLLATGYDG 381 (522)
Q Consensus 360 -v~~~dG~~~~~D~VI~ATG~~~ 381 (522)
|.+++|+++.+|.+|+|||-..
T Consensus 145 ~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 145 RLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred EEEcCCCCEEEccEEEEecCCcC
Confidence 6667888899999999999553
No 242
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.98 E-value=7.4e-05 Score=77.90 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=73.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. +.+ ..++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il--------------------------------~~~--d~~~~~ 211 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL--------------------------------RSF--DSMISE 211 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--------------------------------ccc--CHHHHH
Confidence 36899999999999999999 899999999976431 111 234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+..+++|++++. +. .+...+.++++ ...+.+|.||+|+| ..
T Consensus 212 ~~~~~l~~~gI--~i~~~~~v~~i~~--~~------------------~~~~~v~~~~g--~~~i~~D~vi~a~G---~~ 264 (450)
T TIGR01421 212 TITEEYEKEGI--NVHKLSKPVKVEK--TV------------------EGKLVIHFEDG--KSIDDVDELIWAIG---RK 264 (450)
T ss_pred HHHHHHHHcCC--EEEcCCEEEEEEE--eC------------------CceEEEEECCC--cEEEEcCEEEEeeC---CC
Confidence 67777777787 7888999999976 21 12234555443 23689999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 265 pn~~ 268 (450)
T TIGR01421 265 PNTK 268 (450)
T ss_pred cCcc
Confidence 6654
No 243
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.98 E-value=0.00011 Score=78.43 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=35.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
..||||||+| +|++||..+ .|.+|+|+|+.+.+||+...
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 5799999999 899999998 89999999999999986553
No 244
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.98 E-value=0.0001 Score=79.68 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.||++||.++ .|.+|+|+|+....+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 46999999999999999999 7899999999876554
No 245
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.98 E-value=9.4e-05 Score=79.93 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.||++||..+ .|.+|+|+||....+|
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 46999999999999999999 7999999999876554
No 246
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=8.1e-05 Score=77.52 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +.+ ..++..
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~~--~~~~~~ 203 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--------------------------------PRE--DRDIAD 203 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--------------------------------CCc--CHHHHH
Confidence 45899999999999999999 899999999975431 111 245667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+.+..++.++ .+.++++|.+++. + .+...+...++ ++.+|.||+|+|. .
T Consensus 204 ~l~~~l~~~gV--~v~~~~~v~~i~~--~-------------------~~~v~v~~~~g----~i~~D~vl~a~G~---~ 253 (441)
T PRK08010 204 NIATILRDQGV--DIILNAHVERISH--H-------------------ENQVQVHSEHA----QLAVDALLIASGR---Q 253 (441)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEE--c-------------------CCEEEEEEcCC----eEEeCEEEEeecC---C
Confidence 77777788888 7888999999976 3 12334443332 5889999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 254 pn~~ 257 (441)
T PRK08010 254 PATA 257 (441)
T ss_pred cCCC
Confidence 6653
No 247
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=0.0001 Score=79.83 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G 45 (522)
..||+|||||.||++||..+ .|.+|+|+|+....|
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 46999999999999999999 899999999987554
No 248
>PRK07846 mycothione reductase; Reviewed
Probab=97.98 E-value=7.5e-05 Score=77.84 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. +. ...++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll--------------------------------~~--~d~~~~~ 211 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL--------------------------------RH--LDDDISE 211 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999975431 11 1233445
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....+ .++ .++++++|++++. + .+...|++.+++ ++.+|.||+|+| ..
T Consensus 212 ~l~~l~~-~~v--~i~~~~~v~~i~~--~-------------------~~~v~v~~~~g~---~i~~D~vl~a~G---~~ 261 (451)
T PRK07846 212 RFTELAS-KRW--DVRLGRNVVGVSQ--D-------------------GSGVTLRLDDGS---TVEADVLLVATG---RV 261 (451)
T ss_pred HHHHHHh-cCe--EEEeCCEEEEEEE--c-------------------CCEEEEEECCCc---EeecCEEEEEEC---Cc
Confidence 5554433 345 6788999999876 2 123345554443 799999999999 44
Q ss_pred CCCCC
Q 041145 169 PRMPA 173 (522)
Q Consensus 169 p~~p~ 173 (522)
|+...
T Consensus 262 pn~~~ 266 (451)
T PRK07846 262 PNGDL 266 (451)
T ss_pred cCccc
Confidence 66543
No 249
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=0.00013 Score=79.05 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G 45 (522)
..||+|||||.|||+||..+ .|.+|+|+|+...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 46999999999999999999 799999999866554
No 250
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.97 E-value=0.0002 Score=76.98 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
..||+|||+|.+|++||..+ .|.+|+|+||...+||.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 46999999999999999999 89999999999887764
No 251
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.97 E-value=5.4e-05 Score=80.65 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHh-CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL-RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.||++||.++ .|.+|+|+||.+..||
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence 56999999999999999999 8999999999887665
No 252
>PRK14727 putative mercuric reductase; Provisional
Probab=97.96 E-value=8.2e-05 Score=78.25 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++..-+ + ....++..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l---------------------------------~--~~d~~~~~ 232 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL---------------------------------F--REDPLLGE 232 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC---------------------------------C--cchHHHHH
Confidence 36899999999999999999 89999999874210 1 11345667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|..++. + .+.+.+...++ ++.+|.||+|+|. .
T Consensus 233 ~l~~~L~~~GV--~i~~~~~V~~i~~--~-------------------~~~~~v~~~~g----~i~aD~VlvA~G~---~ 282 (479)
T PRK14727 233 TLTACFEKEGI--EVLNNTQASLVEH--D-------------------DNGFVLTTGHG----ELRAEKLLISTGR---H 282 (479)
T ss_pred HHHHHHHhCCC--EEEcCcEEEEEEE--e-------------------CCEEEEEEcCC----eEEeCEEEEccCC---C
Confidence 77777788887 7888999999876 2 22344544333 5889999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 283 pn~~ 286 (479)
T PRK14727 283 ANTH 286 (479)
T ss_pred CCcc
Confidence 6654
No 253
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.96 E-value=7.3e-05 Score=78.42 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~G 45 (522)
..||+|||||+.|+++|.+| .+.+|+|+||.+.+|
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 45999999999999999999 378999999987543
No 254
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.96 E-value=8.7e-05 Score=77.76 Aligned_cols=98 Identities=10% Similarity=0.139 Sum_probs=73.1
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (522)
++|+|||+|..|+.+|..| .|.+|+++++.+.+. +.+ ..++..+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~~--d~~~~~~ 223 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL--------------------------------PGE--DADAAEV 223 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC--------------------------------CCC--CHHHHHH
Confidence 5899999999999999998 899999999875431 111 2345667
Q ss_pred HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCCC
Q 041145 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIP 169 (522)
Q Consensus 90 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p 169 (522)
+....++.++ .+..+++|.+++. + .+...|.+.++. ++.+|.||+|+| ..|
T Consensus 224 l~~~L~~~gV--~i~~~~~v~~v~~--~-------------------~~~~~v~~~~g~---~l~~D~vl~a~G---~~p 274 (466)
T PRK07845 224 LEEVFARRGM--TVLKRSRAESVER--T-------------------GDGVVVTLTDGR---TVEGSHALMAVG---SVP 274 (466)
T ss_pred HHHHHHHCCc--EEEcCCEEEEEEE--e-------------------CCEEEEEECCCc---EEEecEEEEeec---CCc
Confidence 7777778888 7888999999975 2 123445554443 689999999999 446
Q ss_pred CCC
Q 041145 170 RMP 172 (522)
Q Consensus 170 ~~p 172 (522)
+..
T Consensus 275 n~~ 277 (466)
T PRK07845 275 NTA 277 (466)
T ss_pred CCC
Confidence 654
No 255
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.95 E-value=1.1e-05 Score=89.51 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=57.0
Q ss_pred cEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCC---C-ccc-CCCccCcccccC------------CCCCcc--cCC
Q 041145 13 KIGIIGAGISGIATAKQL--R--HYDPLVFEATNSI---G-GVW-KHCSFNSTKLQT------------PRCDFE--FSD 69 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~---G-G~w-~~~~~~~~~~~~------------~~~~~~--~~~ 69 (522)
+|+|||||+||+++|..| . |++|+|+|+++.. | |+- ..+....+.... ....+. +.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999 4 8999999998753 3 111 110100010000 000000 010
Q ss_pred CCCCCCCCCC--CCChHHHHHHHHHHHHhcCCcCceEeceEEEEE
Q 041145 70 YPWPERDDAS--FPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEI 112 (522)
Q Consensus 70 ~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v 112 (522)
....... .. -..+.++.+.|.+.+.+.++ .++++++|+++
T Consensus 82 ~~~~~~g-~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i 123 (765)
T PRK08255 82 RRIRSGG-HGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDD 123 (765)
T ss_pred EEEEECC-eeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCch
Confidence 0000011 11 25688899999988888887 68888877554
No 256
>PRK07233 hypothetical protein; Provisional
Probab=97.95 E-value=1.1e-05 Score=83.81 Aligned_cols=38 Identities=45% Similarity=0.745 Sum_probs=35.4
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
+|+|||||++||+||..| .|++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 589999999999999999 89999999999999997654
No 257
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.95 E-value=6.9e-06 Score=85.85 Aligned_cols=38 Identities=37% Similarity=0.683 Sum_probs=35.0
Q ss_pred cEEEECCCHHHHHHHHHh--CC--CCcEEEccCCCCCcccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RH--YDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g--~~v~v~e~~~~~GG~w~~ 50 (522)
+|+|||||+|||+||+.| .| ++|+|+|+++.+||....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 799999999999999999 56 899999999999997664
No 258
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.94 E-value=0.00022 Score=76.79 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCccc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVW 48 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w 48 (522)
..||+|||+|.+|+++|..+ .|.+|+|||+.+.+||..
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTT 51 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 57999999999999999999 899999999988887753
No 259
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=0.00014 Score=78.24 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.|||+||.++ .|.+|+|+|+....+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 45999999999999999999 7999999999866544
No 260
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=2.2e-05 Score=74.37 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=53.1
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCC-CCChHHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDAS-FPSHVELLD 88 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 88 (522)
+|++|||||.+|+..|..| .|.+|.|+|+++++||.+....-+...+.+.+ +.+ .. ..+.+.+.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk---------YGp---HIFHT~~~~Vwd 69 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK---------YGP---HIFHTDNKRVWD 69 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee---------ccC---ceeecCchHHHH
Confidence 4899999999999999988 79999999999999999887433222221111 000 11 245678899
Q ss_pred HHHHHHHh
Q 041145 89 YLHGYAVH 96 (522)
Q Consensus 89 yl~~~~~~ 96 (522)
|+..+.+-
T Consensus 70 yv~~F~e~ 77 (374)
T COG0562 70 YVNQFTEF 77 (374)
T ss_pred HHhhhhhh
Confidence 99988773
No 261
>PLN02268 probable polyamine oxidase
Probab=97.92 E-value=8.6e-06 Score=84.72 Aligned_cols=39 Identities=33% Similarity=0.619 Sum_probs=35.7
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
++|+|||||.|||+||+.| .|++|+|+|+++.+||....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 3799999999999999999 79999999999999997653
No 262
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.92 E-value=7.8e-05 Score=70.54 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=32.7
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
.|||||+|.|||+|+..+ .+-.|+++|+...+||.-.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999 4545999999999998654
No 263
>PRK14694 putative mercuric reductase; Provisional
Probab=97.91 E-value=0.00012 Score=76.80 Aligned_cols=97 Identities=10% Similarity=0.157 Sum_probs=69.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++...+ +. ...++..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------------------------------~~--~~~~~~~ 222 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------------------------------SQ--EDPAVGE 222 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------------------------------CC--CCHHHHH
Confidence 46899999999999999998 88999999874211 11 1234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|.+++. + .+...+.+.++ ++.+|.||+|+|. .
T Consensus 223 ~l~~~l~~~GI--~v~~~~~v~~i~~--~-------------------~~~~~v~~~~~----~i~~D~vi~a~G~---~ 272 (468)
T PRK14694 223 AIEAAFRREGI--EVLKQTQASEVDY--N-------------------GREFILETNAG----TLRAEQLLVATGR---T 272 (468)
T ss_pred HHHHHHHhCCC--EEEeCCEEEEEEE--c-------------------CCEEEEEECCC----EEEeCEEEEccCC---C
Confidence 67777777787 7888999999876 2 12233433222 6999999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 273 pn~~ 276 (468)
T PRK14694 273 PNTE 276 (468)
T ss_pred CCcC
Confidence 6654
No 264
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.90 E-value=0.00015 Score=76.14 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++++|||||+.|+.+|..| .|.+|+|+++. .+ . +.+ ..++.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~--------l------------------------~~~--d~~~~~ 224 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL--------L------------------------RGF--DQDCAN 224 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc--------c------------------------ccc--CHHHHH
Confidence 35899999999999999999 89999999873 21 0 111 245667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++.+..++.++ .+.+++.+.++...+ +...|++.+++...++.+|.||+|+|. .
T Consensus 225 ~l~~~L~~~gV--~i~~~~~v~~v~~~~---------------------~~~~v~~~~~~~~~~i~~D~vl~a~G~---~ 278 (484)
T TIGR01438 225 KVGEHMEEHGV--KFKRQFVPIKVEQIE---------------------AKVKVTFTDSTNGIEEEYDTVLLAIGR---D 278 (484)
T ss_pred HHHHHHHHcCC--EEEeCceEEEEEEcC---------------------CeEEEEEecCCcceEEEeCEEEEEecC---C
Confidence 77777777888 788899888887621 223455544322246899999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 279 pn~~ 282 (484)
T TIGR01438 279 ACTR 282 (484)
T ss_pred cCCC
Confidence 6654
No 265
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.90 E-value=8.1e-05 Score=77.35 Aligned_cols=94 Identities=15% Similarity=0.299 Sum_probs=70.8
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (522)
++|+|||||+.|+.+|..| .|.+|+++++.+.+. +. -..++...
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------------------------------~~--~d~~~~~~ 194 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--------------------------------KL--MDADMNQP 194 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--------------------------------hh--cCHHHHHH
Confidence 5899999999999999999 789999999975431 11 12345667
Q ss_pred HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCCC
Q 041145 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDIP 169 (522)
Q Consensus 90 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~p 169 (522)
+....++.++ .+.++++|.+++. . .|++++++ ++.+|.|++|+|. .|
T Consensus 195 l~~~l~~~gI--~i~~~~~v~~i~~--~-----------------------~v~~~~g~---~~~~D~vl~a~G~---~p 241 (438)
T PRK13512 195 ILDELDKREI--PYRLNEEIDAING--N-----------------------EVTFKSGK---VEHYDMIIEGVGT---HP 241 (438)
T ss_pred HHHHHHhcCC--EEEECCeEEEEeC--C-----------------------EEEECCCC---EEEeCEEEECcCC---Cc
Confidence 7777777788 7888999988853 1 35555553 6899999999994 46
Q ss_pred CCC
Q 041145 170 RMP 172 (522)
Q Consensus 170 ~~p 172 (522)
+.+
T Consensus 242 n~~ 244 (438)
T PRK13512 242 NSK 244 (438)
T ss_pred ChH
Confidence 653
No 266
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.89 E-value=0.00015 Score=75.74 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--------------------------------~~--~d~~~~~ 214 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--------------------------------RH--LDEDISD 214 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 899999999875431 11 1133445
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....+ .++ .++++++|++++. + .+...|++.+++ ++.+|.|++|+| ..
T Consensus 215 ~l~~~~~-~gI--~i~~~~~V~~i~~--~-------------------~~~v~v~~~~g~---~i~~D~vl~a~G---~~ 264 (452)
T TIGR03452 215 RFTEIAK-KKW--DIRLGRNVTAVEQ--D-------------------GDGVTLTLDDGS---TVTADVLLVATG---RV 264 (452)
T ss_pred HHHHHHh-cCC--EEEeCCEEEEEEE--c-------------------CCeEEEEEcCCC---EEEcCEEEEeec---cC
Confidence 5554443 355 6788999999976 3 223455554443 799999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 265 pn~~ 268 (452)
T TIGR03452 265 PNGD 268 (452)
T ss_pred cCCC
Confidence 6654
No 267
>PLN02568 polyamine oxidase
Probab=97.89 E-value=1.1e-05 Score=85.35 Aligned_cols=42 Identities=33% Similarity=0.590 Sum_probs=37.2
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CC-----CCcEEEccCCCCCcccCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RH-----YDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g-----~~v~v~e~~~~~GG~w~~ 50 (522)
|+.++|+|||||++||++|+.| .| ++|+|+|+++.+||.+..
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 3456899999999999999999 55 899999999999998764
No 268
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.89 E-value=9.6e-05 Score=75.51 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
+++|+|||||++|+++|..| .|.+|+++|+....
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 56999999999999999999 88999999987644
No 269
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.88 E-value=0.00015 Score=76.13 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHh-----CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHH
Q 041145 11 SSKIGIIGAGISGIATAKQL-----RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVE 85 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (522)
.++|+|||||+.|+.+|..+ .|.+|+|+|+.+.+. +.+ ..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--------------------------------~~~--d~~ 232 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--------------------------------RGF--DST 232 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--------------------------------ccc--CHH
Confidence 46899999999999999765 389999999976531 111 245
Q ss_pred HHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeecc
Q 041145 86 LLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 86 ~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
+.+.+....++.++ .+.++++|++++. +. ++...|.+.++. ++.+|.||+|+|
T Consensus 233 ~~~~l~~~L~~~GI--~i~~~~~v~~i~~--~~------------------~~~~~v~~~~g~---~i~~D~vl~a~G-- 285 (486)
T TIGR01423 233 LRKELTKQLRANGI--NIMTNENPAKVTL--NA------------------DGSKHVTFESGK---TLDVDVVMMAIG-- 285 (486)
T ss_pred HHHHHHHHHHHcCC--EEEcCCEEEEEEE--cC------------------CceEEEEEcCCC---EEEcCEEEEeeC--
Confidence 66777777788888 7889999999976 21 122345554443 699999999999
Q ss_pred CCCCCCC
Q 041145 166 GDIPRMP 172 (522)
Q Consensus 166 s~~p~~p 172 (522)
..|+..
T Consensus 286 -~~Pn~~ 291 (486)
T TIGR01423 286 -RVPRTQ 291 (486)
T ss_pred -CCcCcc
Confidence 446653
No 270
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.88 E-value=1.7e-05 Score=83.22 Aligned_cols=39 Identities=33% Similarity=0.549 Sum_probs=35.8
Q ss_pred CcEEEECCCHHHHHHHHHh--C----CCCcEEEccCCCCCcccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--R----HYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~----g~~v~v~e~~~~~GG~w~~ 50 (522)
++|+|||||++||+||..| . |++|+|+|+++.+||....
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 4899999999999999999 5 8999999999999997654
No 271
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.87 E-value=1.7e-05 Score=80.79 Aligned_cols=38 Identities=39% Similarity=0.741 Sum_probs=35.1
Q ss_pred cEEEECCCHHHHHHHHHh--CC--CCcEEEccCCCCCcccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RH--YDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g--~~v~v~e~~~~~GG~w~~ 50 (522)
+|+|||||++||+||..| .+ .+++|||+.+++||.-..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 799999999999999999 55 899999999999998765
No 272
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.87 E-value=0.00015 Score=78.17 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 14 IGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 14 vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
|+|||+|.|||+||..+ .|.+|+|+|+.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 69999999999999999 79999999998744
No 273
>PTZ00367 squalene epoxidase; Provisional
Probab=97.86 E-value=8.5e-05 Score=79.00 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.+||+|||||++|+++|..| .|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 56999999999999999999 899999999975
No 274
>PRK13748 putative mercuric reductase; Provisional
Probab=97.86 E-value=0.00014 Score=78.30 Aligned_cols=97 Identities=7% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++...+ +. ...++..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l---------------------------------~~--~d~~~~~ 314 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF---------------------------------FR--EDPAIGE 314 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc---------------------------------cc--cCHHHHH
Confidence 46899999999999999999 89999999984211 11 1235667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.++++|.+++. + ++.+.+...++ ++.+|.||+|+| ..
T Consensus 315 ~l~~~l~~~gI--~i~~~~~v~~i~~--~-------------------~~~~~v~~~~~----~i~~D~vi~a~G---~~ 364 (561)
T PRK13748 315 AVTAAFRAEGI--EVLEHTQASQVAH--V-------------------DGEFVLTTGHG----ELRADKLLVATG---RA 364 (561)
T ss_pred HHHHHHHHCCC--EEEcCCEEEEEEe--c-------------------CCEEEEEecCC----eEEeCEEEEccC---CC
Confidence 77777778888 7888999999876 2 22334443332 589999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 365 pn~~ 368 (561)
T PRK13748 365 PNTR 368 (561)
T ss_pred cCCC
Confidence 7664
No 275
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.84 E-value=0.00036 Score=80.92 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~ 47 (522)
..||+|||+|.||++||.++ .|.+|+|+|+.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 57999999999999999999 89999999999888875
No 276
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.84 E-value=0.0003 Score=74.99 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHh-CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL-RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.||++||..+ .+.+|+|+||....||
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCC
Confidence 46999999999999999999 5589999999877665
No 277
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.83 E-value=0.00018 Score=76.11 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHhCCCCcEEEccCCC
Q 041145 11 SSKIGIIGAGISGIATAKQLRHYDPLVFEATNS 43 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l~g~~v~v~e~~~~ 43 (522)
..||+|||+|.||++||.++.+.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLAPRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhCcCCEEEEECCCC
Confidence 469999999999999999996679999999875
No 278
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.83 E-value=6.3e-05 Score=73.87 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=28.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+|+|||+|.+|+.+|..|++.+. +|+++.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~-----~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL-----KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-----CEEEEeccC
Confidence 59999999999999999998765 499999865
No 279
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.83 E-value=0.00012 Score=81.60 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++++|||||..|+.+|..| .|.+|+|+|+.+.+- +.. -..+...
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll--------------------------------~~~-ld~~~~~ 191 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM--------------------------------AEQ-LDQMGGE 191 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch--------------------------------hhh-cCHHHHH
Confidence 35899999999999999999 899999999875420 000 1234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.++...++.++ .+.+++.|.++.. +.. ...-.|.+.+++ ++.+|.||+|+|. .
T Consensus 192 ~l~~~L~~~GV--~v~~~~~v~~I~~--~~~-----------------~~~~~v~~~dG~---~i~~D~Vv~A~G~---r 244 (847)
T PRK14989 192 QLRRKIESMGV--RVHTSKNTLEIVQ--EGV-----------------EARKTMRFADGS---ELEVDFIVFSTGI---R 244 (847)
T ss_pred HHHHHHHHCCC--EEEcCCeEEEEEe--cCC-----------------CceEEEEECCCC---EEEcCEEEECCCc---c
Confidence 77777788888 7899999999875 211 122345555554 7999999999994 4
Q ss_pred CCC
Q 041145 169 PRM 171 (522)
Q Consensus 169 p~~ 171 (522)
|+.
T Consensus 245 Pn~ 247 (847)
T PRK14989 245 PQD 247 (847)
T ss_pred cCc
Confidence 664
No 280
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.82 E-value=4.3e-05 Score=77.45 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=36.1
Q ss_pred hcccCcEEEEeCceeEEec--CcEEecCCceeeccEEEEeccCCCCc
Q 041145 339 EAEKGNILFKRASKWWFWS--GGIEFEDKSKLEADVVLLATGYDGKK 383 (522)
Q Consensus 339 ~l~~~~v~v~~~~i~~~~~--~~v~~~dG~~~~~D~VI~ATG~~~~~ 383 (522)
.+++.+|+++.+.+.+++. +.|.+++|+++++|.+|+|||-++..
T Consensus 63 ~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 63 LARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPL 109 (364)
T ss_pred HHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCC
Confidence 3445568888877878764 45889999899999999999999874
No 281
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.82 E-value=0.00022 Score=62.72 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=28.2
Q ss_pred EEECCCCCHHHHHHHHHHhc--CCCCCCcEEEEeecCc
Q 041145 211 AIIGYRKSAIDLAVECAEAN--QGPNGQPCTMVIRTLH 246 (522)
Q Consensus 211 ~VIG~G~sg~dia~~l~~~~--~~~~~~~Vt~v~R~~~ 246 (522)
+|||+|++|+=++..|.+.. .. ..+|+++.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~--~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKP--PLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCC--CCEEEEEcCCCc
Confidence 59999999999999999985 22 467999988655
No 282
>PLN02676 polyamine oxidase
Probab=97.81 E-value=2.2e-05 Score=82.34 Aligned_cols=46 Identities=43% Similarity=0.693 Sum_probs=39.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCCCCCcccCCCccCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATNSIGGVWKHCSFNST 56 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~ 56 (522)
.++|+|||||++||+||++| .|. +|+|+|+++.+||.+....+++.
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~ 74 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV 74 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe
Confidence 45899999999999999999 787 69999999999998876555443
No 283
>PTZ00058 glutathione reductase; Provisional
Probab=97.81 E-value=0.00021 Score=75.99 Aligned_cols=101 Identities=17% Similarity=0.354 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .|.+|+++++.+.+. +.+ ..++.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--------------------------------~~~--d~~i~~ 282 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--------------------------------RKF--DETIIN 282 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--------------------------------ccC--CHHHHH
Confidence 46899999999999999999 899999999975431 111 245566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+..+++|.+++. ++ .+...+...+++ .++.+|.|++|+| ..
T Consensus 283 ~l~~~L~~~GV--~i~~~~~V~~I~~--~~------------------~~~v~v~~~~~~--~~i~aD~VlvA~G---r~ 335 (561)
T PTZ00058 283 ELENDMKKNNI--NIITHANVEEIEK--VK------------------EKNLTIYLSDGR--KYEHFDYVIYCVG---RS 335 (561)
T ss_pred HHHHHHHHCCC--EEEeCCEEEEEEe--cC------------------CCcEEEEECCCC--EEEECCEEEECcC---CC
Confidence 77777777788 7888999999876 21 122333333322 3689999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 336 Pn~~ 339 (561)
T PTZ00058 336 PNTE 339 (561)
T ss_pred CCcc
Confidence 6653
No 284
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1.8e-05 Score=80.34 Aligned_cols=38 Identities=37% Similarity=0.707 Sum_probs=35.5
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
+|+|+|||.|||+||+.| .|++|+|+|+++.+||....
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 899999999999999999 99999999999999996553
No 285
>PLN02815 L-aspartate oxidase
Probab=97.80 E-value=0.00026 Score=75.92 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||+|||+|.|||+||..+ .| +|+|+|+.+..||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 46999999999999999999 67 9999999887665
No 286
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.79 E-value=0.00017 Score=77.70 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CC---CCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RH---YDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g---~~v~v~e~~~~~GG 46 (522)
..||+|||+|.|||+||..+ .| .+|+|+||....||
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 35999999999999999999 66 89999999876654
No 287
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.78 E-value=0.00055 Score=73.27 Aligned_cols=38 Identities=24% Similarity=0.515 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCccc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVW 48 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w 48 (522)
..||+|||+|.+|+++|..+ .|.+|+|||+.+.+||+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 46999999999999999999 799999999988777753
No 288
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.78 E-value=2.2e-05 Score=78.32 Aligned_cols=40 Identities=48% Similarity=0.737 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHh---CCCCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL---RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l---~g~~v~v~e~~~~~GG~w~~ 50 (522)
..+|||||||.|||+||.+| ...+++|+|..+++||..+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 45899999999999999999 45589999999999997765
No 289
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.77 E-value=0.00032 Score=74.11 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=70.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++. .+. +.+ ..++.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--------------------------------~~~--d~~~~~ 226 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL--------------------------------RGF--DRQCSE 226 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc--------------------------------ccC--CHHHHH
Confidence 35899999999999999999 89999999873 210 111 234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+..++.+.+++. . .+...|.+.+++ ++.+|.||+|+| ..
T Consensus 227 ~l~~~l~~~GV--~i~~~~~v~~v~~--~-------------------~~~~~v~~~~g~---~i~~D~vl~a~G---~~ 277 (499)
T PTZ00052 227 KVVEYMKEQGT--LFLEGVVPINIEK--M-------------------DDKIKVLFSDGT---TELFDTVLYATG---RK 277 (499)
T ss_pred HHHHHHHHcCC--EEEcCCeEEEEEE--c-------------------CCeEEEEECCCC---EEEcCEEEEeeC---CC
Confidence 77777777787 7888888888876 2 122345554443 688999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 278 pn~~ 281 (499)
T PTZ00052 278 PDIK 281 (499)
T ss_pred CCcc
Confidence 6654
No 290
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.77 E-value=0.00015 Score=80.70 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||..|+.+|..| .|.+|+|+|+.+.+- + ..+ ..+...
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll---------------------------~----~~l--d~~~~~ 186 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM---------------------------A----KQL--DQTAGR 186 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh---------------------------h----hhc--CHHHHH
Confidence 35899999999999999999 899999999865320 0 001 234456
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++.++ .+.+++.|+++.. + .....|++.+++ ++.+|.||+|+|. .
T Consensus 187 ~l~~~l~~~GV--~v~~~~~v~~i~~--~-------------------~~~~~v~~~dG~---~i~~D~Vi~a~G~---~ 237 (785)
T TIGR02374 187 LLQRELEQKGL--TFLLEKDTVEIVG--A-------------------TKADRIRFKDGS---SLEADLIVMAAGI---R 237 (785)
T ss_pred HHHHHHHHcCC--EEEeCCceEEEEc--C-------------------CceEEEEECCCC---EEEcCEEEECCCC---C
Confidence 66667777888 7888998888864 2 112346666654 7999999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 238 Pn~~ 241 (785)
T TIGR02374 238 PNDE 241 (785)
T ss_pred cCcH
Confidence 6653
No 291
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.76 E-value=2.6e-05 Score=82.48 Aligned_cols=39 Identities=33% Similarity=0.550 Sum_probs=36.3
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
+||+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccce
Confidence 4899999999999999999 89999999999999997664
No 292
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.76 E-value=0.00029 Score=73.18 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEee
Q 041145 83 HVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCI 162 (522)
Q Consensus 83 ~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAt 162 (522)
...+...|...+++.+. .+.++++|+++.. +++ +.+.+-+....+..++.++.||+||
T Consensus 122 g~~l~~~L~~~a~~~Gv--~i~~~~~v~~l~~--~~~------------------~g~v~gv~~~~~~~~i~ak~VIlAt 179 (432)
T TIGR02485 122 GKALTNALYSSAERLGV--EIRYGIAVDRIPP--EAF------------------DGAHDGPLTTVGTHRITTQALVLAA 179 (432)
T ss_pred HHHHHHHHHHHHHHcCC--EEEeCCEEEEEEe--cCC------------------CCeEEEEEEcCCcEEEEcCEEEEcC
Confidence 45677778888888887 7999999999876 311 2233322211112468899999999
Q ss_pred eccC
Q 041145 163 GKFG 166 (522)
Q Consensus 163 G~~s 166 (522)
|.++
T Consensus 180 GG~~ 183 (432)
T TIGR02485 180 GGLG 183 (432)
T ss_pred CCcc
Confidence 9763
No 293
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.76 E-value=0.00023 Score=73.27 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=72.6
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHH
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDY 89 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 89 (522)
+++||||+|+.|+.+|..| .|++|+++|+.+.+++. .+. .++.+.
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------------------~~~--~~~~~~ 183 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------------------LLD--PEVAEE 183 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------------------hhh--HHHHHH
Confidence 6899999999999999999 89999999998766432 111 667788
Q ss_pred HHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEE---EEEEeCCeeEEEEECEEEEeeecc
Q 041145 90 LHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWE---VAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 90 l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
+....+.+++ .+.+++++..++...+ ... +...++. .+.+|.+++++|..
T Consensus 184 ~~~~l~~~gi--~~~~~~~~~~i~~~~~---------------------~~~~~~~~~~~~~---~~~~d~~~~~~g~~ 236 (415)
T COG0446 184 LAELLEKYGV--ELLLGTKVVGVEGKGN---------------------TLVVERVVGIDGE---EIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHCCc--EEEeCCceEEEEcccC---------------------cceeeEEEEeCCc---EEEeeEEEEeeccc
Confidence 8888888886 6888999999986221 111 3333443 79999999999943
No 294
>PLN02576 protoporphyrinogen oxidase
Probab=97.75 E-value=2.8e-05 Score=82.32 Aligned_cols=39 Identities=36% Similarity=0.629 Sum_probs=35.9
Q ss_pred CcEEEECCCHHHHHHHHHh--C-CCCcEEEccCCCCCcccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--R-HYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~-g~~v~v~e~~~~~GG~w~~ 50 (522)
++|+|||||++||+||..| . |++|+|+|+++.+||....
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 4899999999999999999 6 8999999999999997654
No 295
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.73 E-value=0.00075 Score=72.61 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
..||+|||+|.+|+++|..+ .|.+|+|+|+.+.+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 46999999999999999999 8999999999988887654
No 296
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.0004 Score=72.82 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|+.|+.+|..| .|.+|+++++.+.+. +. ...++..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--------------------------------~~--~d~~~~~ 214 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL--------------------------------PL--EDPEVSK 214 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--------------------------------cc--hhHHHHH
Confidence 46899999999999999998 899999999976431 10 1234566
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+....++. + .+.++++|.+++..+ .....++..+++ ..++.+|.||+|+| ..
T Consensus 215 ~~~~~l~~~-I--~i~~~~~v~~i~~~~--------------------~~~v~~~~~~~~-~~~i~~D~vi~a~G---~~ 267 (460)
T PRK06292 215 QAQKILSKE-F--KIKLGAKVTSVEKSG--------------------DEKVEELEKGGK-TETIEADYVLVATG---RR 267 (460)
T ss_pred HHHHHHhhc-c--EEEcCCEEEEEEEcC--------------------CceEEEEEcCCc-eEEEEeCEEEEccC---Cc
Confidence 666666655 6 688899999997621 111223222221 34699999999999 44
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 268 p~~~ 271 (460)
T PRK06292 268 PNTD 271 (460)
T ss_pred cCCC
Confidence 7765
No 297
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.73 E-value=0.00033 Score=75.15 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~GG 46 (522)
..||+|||||.|||+||..+ . |.+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 45999999999999999999 3 589999999877665
No 298
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.72 E-value=0.00037 Score=74.94 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--C--CCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--R--HYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~--g~~v~v~e~~~~~GG 46 (522)
..||+|||||.|||+||..+ . +.+|+|+||....||
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 45999999999999999999 3 579999999876655
No 299
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.71 E-value=2.9e-05 Score=81.49 Aligned_cols=38 Identities=26% Similarity=0.486 Sum_probs=34.2
Q ss_pred cEEEECCCHHHHHHHHHh--C------CCCcEEEccCCCCCcccCC
Q 041145 13 KIGIIGAGISGIATAKQL--R------HYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~------g~~v~v~e~~~~~GG~w~~ 50 (522)
+|+|||||+|||+||..| . +.+|+|+|+++.+||....
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 799999999999999999 3 3799999999999997654
No 300
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.71 E-value=3.3e-05 Score=77.69 Aligned_cols=39 Identities=41% Similarity=0.480 Sum_probs=35.4
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
.||+|||||++|+++|..| .|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 3899999999999999999 79999999999999996544
No 301
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.70 E-value=0.00053 Score=74.62 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G 45 (522)
..||+|||||.|||+||..+ .|.+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 46999999999999999999 899999999876544
No 302
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.68 E-value=2.9e-05 Score=82.29 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=34.7
Q ss_pred EEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 14 IGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 14 vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence 68999999999999999 89999999999999997764
No 303
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.68 E-value=0.00051 Score=74.29 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+..|..| .|.+|+++|+.+.+. +. -..++..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll--------------------------------~~--~d~eis~ 357 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL--------------------------------PL--LDADVAK 357 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc--------------------------------cc--CCHHHHH
Confidence 35899999999999999988 789999999976531 11 1234566
Q ss_pred HHHHH-HHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEe---CC---------eeEEEEE
Q 041145 89 YLHGY-AVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVET---NQ---------AIQWYGF 155 (522)
Q Consensus 89 yl~~~-~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~---------~~~~~~~ 155 (522)
++... .++.++ .+..++.|.+++. ++. .....|.+.+ ++ ..+++.+
T Consensus 358 ~l~~~ll~~~GV--~I~~~~~V~~I~~--~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~a 416 (659)
T PTZ00153 358 YFERVFLKSKPV--RVHLNTLIEYVRA--GKG-----------------NQPVIIGHSERQTGESDGPKKNMNDIKETYV 416 (659)
T ss_pred HHHHHHhhcCCc--EEEcCCEEEEEEe--cCC-----------------ceEEEEEEeccccccccccccccccceEEEc
Confidence 66554 355677 7888999999976 211 1113343321 11 0136999
Q ss_pred CEEEEeeeccCCCCCCCC
Q 041145 156 ELLVMCIGKFGDIPRMPA 173 (522)
Q Consensus 156 d~vViAtG~~s~~p~~p~ 173 (522)
|.|++|+| ..|+...
T Consensus 417 D~VlvAtG---r~Pnt~~ 431 (659)
T PTZ00153 417 DSCLVATG---RKPNTNN 431 (659)
T ss_pred CEEEEEEC---cccCCcc
Confidence 99999999 4577643
No 304
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.67 E-value=8.3e-05 Score=68.34 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+|+|||+|..|+.+|.+|++.+. +|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-----~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-----KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-----EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-----eEEEEeccc
Confidence 59999999999999999997654 599986655
No 305
>PRK10262 thioredoxin reductase; Provisional
Probab=97.62 E-value=0.00054 Score=68.16 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|..|+.+|..| .+.+|+++++.+.+ .....+.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~------------------------------------~~~~~~~~ 189 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF------------------------------------RAEKILIK 189 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc------------------------------------CCCHHHHH
Confidence 46899999999999999999 78899999986432 01122344
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC---eeEEEEECEEEEeeecc
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ---AIQWYGFELLVMCIGKF 165 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~d~vViAtG~~ 165 (522)
.+.+..++.++ .+..++.++++.. +. .+.-.|++.+++ +.+++.+|.||+|+|.
T Consensus 190 ~~~~~l~~~gV--~i~~~~~v~~v~~--~~------------------~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~- 246 (321)
T PRK10262 190 RLMDKVENGNI--ILHTNRTLEEVTG--DQ------------------MGVTGVRLRDTQNSDNIESLDVAGLFVAIGH- 246 (321)
T ss_pred HHHhhccCCCe--EEEeCCEEEEEEc--CC------------------ccEEEEEEEEcCCCCeEEEEECCEEEEEeCC-
Confidence 45555556666 6778889998875 21 111235554431 2457999999999994
Q ss_pred CCCCCCC
Q 041145 166 GDIPRMP 172 (522)
Q Consensus 166 s~~p~~p 172 (522)
.|+..
T Consensus 247 --~p~~~ 251 (321)
T PRK10262 247 --SPNTA 251 (321)
T ss_pred --ccChh
Confidence 46553
No 306
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.62 E-value=0.00092 Score=69.19 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=68.4
Q ss_pred CcEEEECCCHHHHHHHHHh-C---------------CCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCC
Q 041145 12 SKIGIIGAGISGIATAKQL-R---------------HYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPER 75 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l-~---------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (522)
++|+|||||+.|+.+|..| . +.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 3899999999999999888 2 57899999875431
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEE
Q 041145 76 DDASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGF 155 (522)
Q Consensus 76 ~~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 155 (522)
+.+ ..++.+++++..++.++ .+..+++|+++.. + .|.+++++ ++.+
T Consensus 224 --~~~--~~~~~~~~~~~L~~~gV--~v~~~~~v~~v~~--~-----------------------~v~~~~g~---~i~~ 269 (424)
T PTZ00318 224 --GSF--DQALRKYGQRRLRRLGV--DIRTKTAVKEVLD--K-----------------------EVVLKDGE---VIPT 269 (424)
T ss_pred --ccC--CHHHHHHHHHHHHHCCC--EEEeCCeEEEEeC--C-----------------------EEEECCCC---EEEc
Confidence 111 23567777888888888 7888999988864 2 36666664 7999
Q ss_pred CEEEEeeecc
Q 041145 156 ELLVMCIGKF 165 (522)
Q Consensus 156 d~vViAtG~~ 165 (522)
|.+|+|+|..
T Consensus 270 d~vi~~~G~~ 279 (424)
T PTZ00318 270 GLVVWSTGVG 279 (424)
T ss_pred cEEEEccCCC
Confidence 9999999954
No 307
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.61 E-value=0.00018 Score=73.23 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG 45 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G 45 (522)
+|+|||||.+|+.+|..| .|++|+|||+++.++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 799999999999999999 899999999877654
No 308
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.60 E-value=5.8e-05 Score=78.93 Aligned_cols=37 Identities=38% Similarity=0.692 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
+|+|||||++||++|..| .|++|+|+|+++.+||...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence 589999999999999999 7999999999999999764
No 309
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.60 E-value=5.6e-05 Score=79.89 Aligned_cols=46 Identities=30% Similarity=0.326 Sum_probs=38.9
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCccc
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTK 57 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~ 57 (522)
+||+|||||.+||++|..| .|++|+|+|+++.+||.......++..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~ 48 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYR 48 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEE
Confidence 3899999999999999999 899999999999999977653334433
No 310
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.59 E-value=6.6e-05 Score=78.05 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.1
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
..+|+|+|||+|++|+..|..|++... +.+|+++.|.|.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~---g~~Vtv~E~~p~ 62 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD---GARVDIIERLPT 62 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC---CCeEEEEecCCC
Confidence 457899999999999999999986321 346999999874
No 311
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.57 E-value=0.00011 Score=76.41 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCE--EEEEEeCCeeEEEEECEE
Q 041145 81 PSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVW--EVAVETNQAIQWYGFELL 158 (522)
Q Consensus 81 ~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~d~v 158 (522)
..+..+.++|.+.+.+.|+ .+. ..+|+++.. ++ +++ .|++.++ +++++|++
T Consensus 151 lDR~~fd~~L~~~A~~~Gv--~~~-~g~V~~v~~--~~-------------------~g~i~~v~~~~g---~~i~ad~~ 203 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGV--EVI-EGTVVDVEL--DE-------------------DGRITAVRLDDG---RTIEADFF 203 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT---EEE-ET-EEEEEE---T-------------------TSEEEEEEETTS---EEEEESEE
T ss_pred EeHHHHHHHHHHHHhcCCC--EEE-eCEEEEEEE--cC-------------------CCCEEEEEECCC---CEEEEeEE
Confidence 4688999999999999998 443 446888877 31 233 3444444 47999999
Q ss_pred EEeeecc
Q 041145 159 VMCIGKF 165 (522)
Q Consensus 159 ViAtG~~ 165 (522)
|-|||..
T Consensus 204 IDASG~~ 210 (454)
T PF04820_consen 204 IDASGRR 210 (454)
T ss_dssp EE-SGGG
T ss_pred EECCCcc
Confidence 9999976
No 312
>PLN02546 glutathione reductase
Probab=97.56 E-value=0.00068 Score=72.21 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=70.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .+.+|+++++.+.+. +. -..++..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il--------------------------------~~--~d~~~~~ 297 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL--------------------------------RG--FDEEVRD 297 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc--------------------------------cc--cCHHHHH
Confidence 46899999999999999999 788999999875431 11 1345666
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
++....++.++ .+..+++|+++.. +. ++...+...++ +...+|.||+|+|. .
T Consensus 298 ~l~~~L~~~GV--~i~~~~~v~~i~~--~~------------------~g~v~v~~~~g---~~~~~D~Viva~G~---~ 349 (558)
T PLN02546 298 FVAEQMSLRGI--EFHTEESPQAIIK--SA------------------DGSLSLKTNKG---TVEGFSHVMFATGR---K 349 (558)
T ss_pred HHHHHHHHCCc--EEEeCCEEEEEEE--cC------------------CCEEEEEECCe---EEEecCEEEEeecc---c
Confidence 77777777788 7888999999875 21 12223332221 23458999999994 4
Q ss_pred CCCC
Q 041145 169 PRMP 172 (522)
Q Consensus 169 p~~p 172 (522)
|+..
T Consensus 350 Pnt~ 353 (558)
T PLN02546 350 PNTK 353 (558)
T ss_pred cCCC
Confidence 6653
No 313
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.53 E-value=8.2e-05 Score=76.65 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=39.8
Q ss_pred cccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 8 VQYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 8 ~m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
||+.+||+|||+|.+|+.+|..| .|.+|+++|+++..||.|..
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 45578999999999999999999 89999999999999999875
No 314
>PLN02529 lysine-specific histone demethylase 1
Probab=97.49 E-value=0.0001 Score=80.17 Aligned_cols=40 Identities=35% Similarity=0.564 Sum_probs=36.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
.++|+|||||++||+||..| .|++|+|+|+++.+||....
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 57999999999999999999 89999999999999986543
No 315
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.46 E-value=0.00022 Score=71.40 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=34.3
Q ss_pred chhhhccc-CcEEEEeCceeEEec-----CcEEecCCceeeccEEEEeccC
Q 041145 335 NFFSEAEK-GNILFKRASKWWFWS-----GGIEFEDKSKLEADVVLLATGY 379 (522)
Q Consensus 335 ~~~~~l~~-~~v~v~~~~i~~~~~-----~~v~~~dG~~~~~D~VI~ATG~ 379 (522)
.+.+.+++ .+|+++.+.|..+.. .+|.+.+|+++.+|.||+|||-
T Consensus 100 ~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 100 AMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 34455555 899999988887743 2488999999999999999999
No 316
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00013 Score=73.07 Aligned_cols=40 Identities=30% Similarity=0.571 Sum_probs=36.6
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
+..+|+|||||.+||++|..| .|++|+|+|.++.+||-..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 367999999999999999999 8999999999999998654
No 317
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.00041 Score=70.73 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=28.4
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
|+.+||+|||||.||+.||... .|.++.++--+.
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 3357999999999999999998 888888776543
No 318
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.43 E-value=0.0013 Score=70.83 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.8
Q ss_pred cEEEECCCHHHHHHHHHhC------CCCcEEEccCCC
Q 041145 13 KIGIIGAGISGIATAKQLR------HYDPLVFEATNS 43 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l~------g~~v~v~e~~~~ 43 (522)
||+|||||.|||+||.++. |.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999983 789999999764
No 319
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.40 E-value=0.00075 Score=76.38 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
..||+|||+|.|||+||.++ .|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 56999999999999999999 7999999999764
No 320
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.39 E-value=0.00015 Score=76.06 Aligned_cols=38 Identities=34% Similarity=0.596 Sum_probs=34.6
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
+|+|||||++||++|..| .|++|+|+|+++.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 489999999999999999 89999999999999986543
No 321
>PLN02463 lycopene beta cyclase
Probab=97.37 E-value=0.00046 Score=71.45 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=36.9
Q ss_pred CcchhhhcccCcEEEEeCceeEEecC----cEEecCCceeeccEEEEeccCCCC
Q 041145 333 PENFFSEAEKGNILFKRASKWWFWSG----GIEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 333 ~~~~~~~l~~~~v~v~~~~i~~~~~~----~v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
.+.+.+.+.+.+|+++.+.|.+++.+ .|+++||.++++|.||.|+|....
T Consensus 117 ~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 117 KSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 34455555666788876667776542 378889989999999999998764
No 322
>PRK06847 hypothetical protein; Provisional
Probab=97.37 E-value=0.0011 Score=67.42 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=38.4
Q ss_pred ccCcchhhhcccCcEEEEeCc-eeEEecC--c--EEecCCceeeccEEEEeccCCCC
Q 041145 331 ILPENFFSEAEKGNILFKRAS-KWWFWSG--G--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 331 ~~~~~~~~~l~~~~v~v~~~~-i~~~~~~--~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
.+.+.+.+.+.+.+++++.+. +.+++.+ + |.++||+++.+|.||.|+|....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 344455666666678888875 6666532 2 67789999999999999998765
No 323
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.37 E-value=0.0014 Score=63.92 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
..||+|||||.+|-+.|..| .|-+|.|+||+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 46999999999999999999 89999999986
No 324
>PLN02487 zeta-carotene desaturase
Probab=97.36 E-value=0.00018 Score=76.39 Aligned_cols=39 Identities=36% Similarity=0.571 Sum_probs=35.9
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
++|+|||||++||++|..| .|++|+|||+.+.+||.+..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s 116 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGS 116 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceee
Confidence 4899999999999999999 89999999999999997653
No 325
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.36 E-value=0.0014 Score=65.86 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=76.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
...|+++|+|..|+-+|..| .+.+|++|++.+.+ .| + .-..++.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------~~-----------------------~--lf~~~i~~ 259 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------LP-----------------------R--LFGPSIGQ 259 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------hh-----------------------h--hhhHHHHH
Confidence 34799999999999999999 88999999997531 11 1 22445667
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.++.|.+..++ .+..++.+.+++...+ ...-.|.+.++. ++.+|.||+++| .+
T Consensus 260 ~~~~y~e~kgV--k~~~~t~~s~l~~~~~-------------------Gev~~V~l~dg~---~l~adlvv~GiG---~~ 312 (478)
T KOG1336|consen 260 FYEDYYENKGV--KFYLGTVVSSLEGNSD-------------------GEVSEVKLKDGK---TLEADLVVVGIG---IK 312 (478)
T ss_pred HHHHHHHhcCe--EEEEecceeecccCCC-------------------CcEEEEEeccCC---EeccCeEEEeec---cc
Confidence 77777777777 6888888888765221 122346666664 899999999999 55
Q ss_pred CCCCCCC
Q 041145 169 PRMPAFP 175 (522)
Q Consensus 169 p~~p~~p 175 (522)
|+++.+.
T Consensus 313 p~t~~~~ 319 (478)
T KOG1336|consen 313 PNTSFLE 319 (478)
T ss_pred ccccccc
Confidence 7776554
No 326
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.36 E-value=0.00072 Score=67.49 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=62.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CC--CCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCC------CCC---
Q 041145 11 SSKIGIIGAGISGIATAKQL--RH--YDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPE------RDD--- 77 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--- 77 (522)
.++|+|||||.++..++..| .+ .+|+++-|+..+--.-.. .+ ...+-.|...-.|...|-.. ...
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s-~f-~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n 267 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDS-PF-VNEIFSPEYVDYFYSLPDEERRELLREQRHTN 267 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB-----CC-HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccc-cc-hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc
Confidence 56999999999999999999 33 478888886532100000 00 00011111100111111000 000
Q ss_pred CCCCChHHHHH-----HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe--e
Q 041145 78 ASFPSHVELLD-----YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA--I 150 (522)
Q Consensus 78 ~~~~~~~~~~~-----yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 150 (522)
..-++.+.+.+ |-+.+..+-.+ .+.-+++|++++..+ +++|.|++++... .
T Consensus 268 y~~i~~~~l~~iy~~lY~~~v~g~~~~--~l~~~~~v~~~~~~~--------------------~~~~~l~~~~~~~~~~ 325 (341)
T PF13434_consen 268 YGGIDPDLLEAIYDRLYEQRVSGRGRL--RLLPNTEVTSAEQDG--------------------DGGVRLTLRHRQTGEE 325 (341)
T ss_dssp SSEB-HHHHHHHHHHHHHHHHHT---S--EEETTEEEEEEEEES---------------------SSEEEEEEETTT--E
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCe--EEeCCCEEEEEEECC--------------------CCEEEEEEEECCCCCe
Confidence 01122222211 11222222222 566789999998832 3589999987433 6
Q ss_pred EEEEECEEEEeeec
Q 041145 151 QWYGFELLVMCIGK 164 (522)
Q Consensus 151 ~~~~~d~vViAtG~ 164 (522)
+++.+|.||+|||.
T Consensus 326 ~~~~~D~VilATGy 339 (341)
T PF13434_consen 326 ETLEVDAVILATGY 339 (341)
T ss_dssp EEEEESEEEE---E
T ss_pred EEEecCEEEEcCCc
Confidence 68999999999995
No 327
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.35 E-value=0.00019 Score=78.50 Aligned_cols=40 Identities=30% Similarity=0.583 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
.++|+|||||++|+++|+.| .|++|+|+|+++.+||....
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 46899999999999999999 89999999999999986543
No 328
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.34 E-value=0.00026 Score=79.78 Aligned_cols=36 Identities=17% Similarity=-0.010 Sum_probs=32.4
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.++|+|+|||+|++|+-+|..|++.+.+ ||++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~-----VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP-----VTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe-----EEEEeeCC
Confidence 4689999999999999999999998765 99999875
No 329
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.31 E-value=0.0018 Score=68.70 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=64.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||+.|+.+|..| .+.+|+++++.+.+ ... .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l------------------------------------~~~----~ 391 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL------------------------------------KAD----K 391 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC------------------------------------Chh----H
Confidence 46899999999999999999 67899999876432 001 1
Q ss_pred HHHHHHHh-cCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCC--eeEEEEECEEEEeeecc
Q 041145 89 YLHGYAVH-FDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQ--AIQWYGFELLVMCIGKF 165 (522)
Q Consensus 89 yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~d~vViAtG~~ 165 (522)
.+....++ .++ .+.+++.|+++.. +. ...-.|++.+.. ..+++.+|.|++|+|
T Consensus 392 ~l~~~l~~~~gV--~i~~~~~v~~i~~--~~------------------~~v~~v~~~~~~~~~~~~i~~D~vi~a~G-- 447 (515)
T TIGR03140 392 VLQDKLKSLPNV--DILTSAQTTEIVG--DG------------------DKVTGIRYQDRNSGEEKQLDLDGVFVQIG-- 447 (515)
T ss_pred HHHHHHhcCCCC--EEEECCeeEEEEc--CC------------------CEEEEEEEEECCCCcEEEEEcCEEEEEeC--
Confidence 22333333 466 7888999988865 21 111235555432 135799999999999
Q ss_pred CCCCCCC
Q 041145 166 GDIPRMP 172 (522)
Q Consensus 166 s~~p~~p 172 (522)
..|+..
T Consensus 448 -~~Pn~~ 453 (515)
T TIGR03140 448 -LVPNTE 453 (515)
T ss_pred -CcCCch
Confidence 446654
No 330
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.26 E-value=0.00058 Score=69.68 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=33.0
Q ss_pred cCcchhhhcccCcEEEEeCc-eeEEe--cCc---EEecCCceeeccEEEEeccCCCC
Q 041145 332 LPENFFSEAEKGNILFKRAS-KWWFW--SGG---IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 332 ~~~~~~~~l~~~~v~v~~~~-i~~~~--~~~---v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+-+.+...+++.+|+++.+. |.++. +++ |.++++.++.+|.||+|||-...
T Consensus 111 Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 111 VVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 33456677788899999887 87775 344 66667788999999999998753
No 331
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.0039 Score=63.13 Aligned_cols=37 Identities=24% Similarity=0.141 Sum_probs=29.7
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
++|+|||+|.||+.+|.+|.+.... ...|+++.++++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~--~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP--SGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC--CCceEEeccccc
Confidence 5899999999999999999986543 223888887764
No 332
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.21 E-value=0.00038 Score=71.57 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=30.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 206 EGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 206 ~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
++++|+|||+|++|+..|..++... +.+|+++.|.|.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~----g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHE----RVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCeEEEEecCCC
Confidence 5689999999999999999876432 235999999885
No 333
>PLN02612 phytoene desaturase
Probab=97.19 E-value=0.00036 Score=74.79 Aligned_cols=39 Identities=38% Similarity=0.630 Sum_probs=35.6
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
.++|+|||||++||++|..| .|++|+|+|+++.+||...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999 8999999999999998643
No 334
>PLN03000 amine oxidase
Probab=97.18 E-value=0.0004 Score=76.18 Aligned_cols=40 Identities=38% Similarity=0.547 Sum_probs=36.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
.++|+|||||++|+++|..| .|++|+|+|+++.+||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 46899999999999999999 79999999999999997664
No 335
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.15 E-value=0.00046 Score=73.17 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG 46 (522)
..||||||+| +|++||.++ .|.+|+|+|+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5699999999 999999999 8999999999887664
No 336
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.15 E-value=0.0018 Score=61.42 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~G 45 (522)
.+|+||||||+.|++.|++| .+.+|.|+|+...++
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 67999999999999999999 488999999988765
No 337
>PRK05868 hypothetical protein; Validated
Probab=97.13 E-value=0.0014 Score=66.53 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=30.4
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
++|+|||+|.+|+-+|..|++.+. +|+++.|.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~-----~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY-----SVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-----CEEEEcCCCC
Confidence 579999999999999999999865 4999999875
No 338
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.12 E-value=0.0015 Score=66.27 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=28.0
Q ss_pred CceeEEecCcEEecCCceeeccEEEEeccCCC
Q 041145 350 ASKWWFWSGGIEFEDKSKLEADVVLLATGYDG 381 (522)
Q Consensus 350 ~~i~~~~~~~v~~~dG~~~~~D~VI~ATG~~~ 381 (522)
..+.++++++|+++||+++.+|.||.|.|.++
T Consensus 107 ~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 107 RKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 34788888889999999999999999999765
No 339
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.12 E-value=0.0062 Score=58.52 Aligned_cols=40 Identities=33% Similarity=0.508 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHh------CCCCcEEEccCCC---------CCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL------RHYDPLVFEATNS---------IGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l------~g~~v~v~e~~~~---------~GG~w~~ 50 (522)
..+|+|||||-.|.+.|.-| .|++|+|+|+++. +||++..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence 56999999999999999888 5799999999875 5787763
No 340
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.11 E-value=0.00048 Score=68.00 Aligned_cols=40 Identities=30% Similarity=0.525 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CC--CCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RH--YDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g--~~v~v~e~~~~~GG~w~~ 50 (522)
..+|+|+|||++||++|..| .+ ..+++||+.+++||-.+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 45899999999999999999 33 456779999999986554
No 341
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.11 E-value=0.00052 Score=69.42 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
++|+|||||++|+.+|..| .|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 4899999999999999999 89999999987654
No 342
>PLN02976 amine oxidase
Probab=97.10 E-value=0.00047 Score=78.41 Aligned_cols=40 Identities=35% Similarity=0.571 Sum_probs=37.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKH 50 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~ 50 (522)
.++|+|||||++|+++|..| .|++|+|||+++.+||.|..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 46899999999999999999 89999999999999998765
No 343
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.07 E-value=0.0013 Score=73.49 Aligned_cols=37 Identities=32% Similarity=0.313 Sum_probs=32.6
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.++|+|+|||+|++|+.+|..|++.+. +|+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-----~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-----PVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-----eEEEEecccc
Confidence 468999999999999999999999865 4999988764
No 344
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.03 E-value=0.0011 Score=67.51 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=37.1
Q ss_pred cchhhhcccCcEEEEeCceeEEecCc----EEecCCceeeccEEEEeccCCCC
Q 041145 334 ENFFSEAEKGNILFKRASKWWFWSGG----IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 334 ~~~~~~l~~~~v~v~~~~i~~~~~~~----v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+.+.+.+.++++.+....|.+++.++ |+++||+++.++.||-|+|....
T Consensus 91 ~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 91 EFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 34445555667777777788887654 58899999999999999997654
No 345
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.99 E-value=0.0086 Score=62.43 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=31.3
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
...|+|+|||+|++|+-.|..|.+.+. +|+++.|++
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~-----~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGH-----TVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCC-----eEEEEecCC
Confidence 346899999999999999999998765 499999974
No 346
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.99 E-value=0.0066 Score=64.56 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=64.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||||.+|+.+|..| .+.+|+++++.+.+. . . .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~--------------------------------~----~----~ 390 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK--------------------------------A----D----Q 390 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------c----c----H
Confidence 46899999999999999999 788999998864320 0 0 1
Q ss_pred HHHHHHH-hcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCC-EEEEEEeCC--eeEEEEECEEEEeeec
Q 041145 89 YLHGYAV-HFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPV-WEVAVETNQ--AIQWYGFELLVMCIGK 164 (522)
Q Consensus 89 yl~~~~~-~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~~~~~d~vViAtG~ 164 (522)
++..... ..++ .+.+++.++++.. + +++ -.|++.+.. ..+++.+|.|++|+|.
T Consensus 391 ~l~~~l~~~~gI--~i~~~~~v~~i~~--~-------------------~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 391 VLQDKLRSLPNV--TIITNAQTTEVTG--D-------------------GDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred HHHHHHhcCCCc--EEEECcEEEEEEc--C-------------------CCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 2222222 3466 6888999998875 2 111 124554422 2457999999999994
Q ss_pred cCCCCCCC
Q 041145 165 FGDIPRMP 172 (522)
Q Consensus 165 ~s~~p~~p 172 (522)
.|+..
T Consensus 448 ---~p~~~ 452 (517)
T PRK15317 448 ---VPNTE 452 (517)
T ss_pred ---ccCch
Confidence 46543
No 347
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.98 E-value=0.00077 Score=72.18 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC--CCCcc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN--SIGGV 47 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~--~~GG~ 47 (522)
..||+|||+|.|||+||..+ .|.+|+|+|+.+ .+||.
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 46999999999999999999 899999999998 66764
No 348
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.94 E-value=0.00081 Score=70.83 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=35.6
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
+||+|||+|++|+.+|+.| .|++|+|||+....||.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 3899999999999999999 8999999999999998885
No 349
>PRK09897 hypothetical protein; Provisional
Probab=96.89 E-value=0.0091 Score=63.09 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=29.5
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
++|+|||+|++|+=+|..|++... ..+|+++.+++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~---~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQT---PLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCC---CCcEEEEecCC
Confidence 589999999999999999988543 24699999865
No 350
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.88 E-value=0.0095 Score=62.12 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.++|+|||||..|+-+|..| .|.+|++++++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 36899999999999999999 888999999864
No 351
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.86 E-value=0.0018 Score=66.28 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=34.4
Q ss_pred CcchhhhcccCcEEEEeCceeEEecC-----cEEecCCceeeccEEEEeccCCC
Q 041145 333 PENFFSEAEKGNILFKRASKWWFWSG-----GIEFEDKSKLEADVVLLATGYDG 381 (522)
Q Consensus 333 ~~~~~~~l~~~~v~v~~~~i~~~~~~-----~v~~~dG~~~~~D~VI~ATG~~~ 381 (522)
.+.+.+.+.+.+++++.+.+..+..+ .|.+++|+++.+|.||.|+|...
T Consensus 88 ~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 88 HEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 34444555555677776666665533 26677888899999999999765
No 352
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.82 E-value=0.0042 Score=57.09 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=23.5
Q ss_pred EEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 211 AIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 211 ~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+|||+|++|+-+|..|.+.+.+ +|+++.|.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~----~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID----PVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-------EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCC----cEEEEeCCC
Confidence 6999999999999999998642 499999874
No 353
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.80 E-value=0.014 Score=59.68 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHh------CCCCcEEEccCCCCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL------RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l------~g~~v~v~e~~~~~GG~w~ 49 (522)
.++.=|||+|.|+|+||..| .|-+|.|+|+.+..||...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 35788999999999999999 5679999999998887554
No 354
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.77 E-value=0.0089 Score=59.92 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeee
Q 041145 84 VELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIG 163 (522)
Q Consensus 84 ~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG 163 (522)
.++.+-+.++.+.+|. .++|+++|+++.. .. +....|.++++. ++.+|+||+|.|
T Consensus 173 ~~vvkni~~~l~~~G~--ei~f~t~VeDi~~--~~------------------~~~~~v~~~~g~---~i~~~~vvlA~G 227 (486)
T COG2509 173 PKVVKNIREYLESLGG--EIRFNTEVEDIEI--ED------------------NEVLGVKLTKGE---EIEADYVVLAPG 227 (486)
T ss_pred HHHHHHHHHHHHhcCc--EEEeeeEEEEEEe--cC------------------CceEEEEccCCc---EEecCEEEEccC
Confidence 4566677788888887 7999999999987 31 112345566664 899999999999
Q ss_pred ccC
Q 041145 164 KFG 166 (522)
Q Consensus 164 ~~s 166 (522)
+.+
T Consensus 228 rsg 230 (486)
T COG2509 228 RSG 230 (486)
T ss_pred cch
Confidence 863
No 355
>PRK12831 putative oxidoreductase; Provisional
Probab=96.77 E-value=0.045 Score=57.32 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.++|+|||||..|+-+|..| .|.+|+++++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 46999999999999999998 788899998863
No 356
>PRK07236 hypothetical protein; Provisional
Probab=96.76 E-value=0.0049 Score=62.98 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=31.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 206 EGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 206 ~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
...+|+|||||.+|.-+|..|++.+. +|+++.|.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~-----~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGW-----DVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-----CEEEEecCCC
Confidence 34789999999999999999999865 4999999864
No 357
>PRK07588 hypothetical protein; Provisional
Probab=96.75 E-value=0.0028 Score=64.85 Aligned_cols=34 Identities=26% Similarity=0.139 Sum_probs=30.0
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+|+|||||.+|+=+|..|++.+.+ |+++.|.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~-----v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE-----PTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc-----eEEEeCCCC
Confidence 3799999999999999999998654 999999865
No 358
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.73 E-value=0.014 Score=58.86 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=27.4
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCC-cEEEccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYD-PLVFEATN 42 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~-v~v~e~~~ 42 (522)
++|+|||+|..|+.+|..| .|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999988 7886 99998753
No 359
>PLN02697 lycopene epsilon cyclase
Probab=96.72 E-value=0.0033 Score=66.33 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=35.7
Q ss_pred cCcchhhhcccCcEEEEeCceeEEec--Cc---EEecCCceeeccEEEEeccCCC
Q 041145 332 LPENFFSEAEKGNILFKRASKWWFWS--GG---IEFEDKSKLEADVVLLATGYDG 381 (522)
Q Consensus 332 ~~~~~~~~l~~~~v~v~~~~i~~~~~--~~---v~~~dG~~~~~D~VI~ATG~~~ 381 (522)
+.+.+.+.+.+.++++....+..+.. ++ +++.+|.++.+|.||.|+|...
T Consensus 194 L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 194 LHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 34455566666677876666777653 33 4567888899999999999876
No 360
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.68 E-value=0.022 Score=60.55 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=28.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.|+|||||..|+++|..+++.+. +|.++.+.+
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~-----kV~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGA-----KTLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCC-----cEEEEeccc
Confidence 59999999999999999999865 499998874
No 361
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.66 E-value=0.061 Score=56.32 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~ 42 (522)
.++|+|||+|..|+-+|..| .|. +|+++++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999 677 899998853
No 362
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.62 E-value=0.0018 Score=63.60 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=26.5
Q ss_pred CcEEEECCCHHHHHHHHHh--CC-CCcEEEccCCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RH-YDPLVFEATNS 43 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g-~~v~v~e~~~~ 43 (522)
+|++|||+|++|..+|.+| .+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 4899999999999999999 44 79999999753
No 363
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.60 E-value=0.058 Score=60.18 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCC-cEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYD-PLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~-v~v~e~~~ 42 (522)
.++|+|||||..|+-+|..+ .|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999 7887 99998864
No 364
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.58 E-value=0.0094 Score=61.11 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=31.0
Q ss_pred CCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 207 GKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 207 ~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
..+|+|||+|.+|.=+|..|++.+. +|+++.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~-----~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI-----KVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-----cEEEEeeCcc
Confidence 3689999999999999999999865 4999999874
No 365
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.56 E-value=0.0042 Score=61.56 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=64.5
Q ss_pred cEEEECCCHHHHHHHHHh----------------CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCC
Q 041145 13 KIGIIGAGISGIATAKQL----------------RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERD 76 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l----------------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (522)
.+|||||||.|...|.+| ..++|+++|..+.+=
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------- 268 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------- 268 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-------------------------------
Confidence 789999999999999988 235788888876430
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe-eEEEEE
Q 041145 77 DASFPSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA-IQWYGF 155 (522)
Q Consensus 77 ~~~~~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~ 155 (522)
+.| ...+.+|.++...+-++ .++.++.|..+.. . .+....+++ .+++.|
T Consensus 269 -~mF--dkrl~~yae~~f~~~~I--~~~~~t~Vk~V~~--~-----------------------~I~~~~~~g~~~~iPY 318 (491)
T KOG2495|consen 269 -NMF--DKRLVEYAENQFVRDGI--DLDTGTMVKKVTE--K-----------------------TIHAKTKDGEIEEIPY 318 (491)
T ss_pred -HHH--HHHHHHHHHHHhhhccc--eeecccEEEeecC--c-----------------------EEEEEcCCCceeeecc
Confidence 111 23345555555555555 5677778877753 1 244444333 568999
Q ss_pred CEEEEeeeccCCCCCC
Q 041145 156 ELLVMCIGKFGDIPRM 171 (522)
Q Consensus 156 d~vViAtG~~s~~p~~ 171 (522)
-.||-|||.. .+|.+
T Consensus 319 G~lVWatG~~-~rp~~ 333 (491)
T KOG2495|consen 319 GLLVWATGNG-PRPVI 333 (491)
T ss_pred eEEEecCCCC-Cchhh
Confidence 9999999966 44543
No 366
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.50 E-value=0.015 Score=58.54 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCCC---ChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEE
Q 041145 78 ASFP---SHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYG 154 (522)
Q Consensus 78 ~~~~---~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 154 (522)
+.|| ...++.+-|...+++.++ .++++++|.+++ +++|.|.+.++. ..+.
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~-----------------------~~~~~v~~~~~~--~~~~ 129 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQ-----------------------GGTLRFETPDGQ--STIE 129 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEe-----------------------CCcEEEEECCCc--eEEe
Confidence 5566 677899999999999998 799999999982 234777764332 2689
Q ss_pred ECEEEEeeeccCCCCCC
Q 041145 155 FELLVMCIGKFGDIPRM 171 (522)
Q Consensus 155 ~d~vViAtG~~s~~p~~ 171 (522)
+|+||+|||.. +.|..
T Consensus 130 a~~vIlAtGG~-s~p~~ 145 (376)
T TIGR03862 130 ADAVVLALGGA-SWSQL 145 (376)
T ss_pred cCEEEEcCCCc-ccccc
Confidence 99999999987 44443
No 367
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.48 E-value=0.0029 Score=72.16 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=31.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 206 EGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 206 ~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
++|+|+|||+|++|+..|..|++.+.+ |+++.+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~-----VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD-----VTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc-----EEEEecCCC
Confidence 578999999999999999999998754 999988753
No 368
>PRK09126 hypothetical protein; Provisional
Probab=96.45 E-value=0.017 Score=59.13 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=35.9
Q ss_pred cchhhhc-ccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 334 ENFFSEA-EKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 334 ~~~~~~l-~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
..+++.+ +..+++++.+. +.+++. ++ |.+++|+++.+|.||.|.|....
T Consensus 114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 114 RAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 3444554 34678888886 666653 22 67789999999999999999765
No 369
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0031 Score=60.31 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=29.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
++||+|||||.|||+|+.+| .|.+++|+.+.-
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 57999999999999999999 899999998753
No 370
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.40 E-value=0.0047 Score=56.83 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=30.4
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
.+||+|+|||||.+|.--+..|.+.+.. ||++...
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~-----VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQ-----LRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCE-----EEEEcCC
Confidence 6789999999999999999999998654 9988643
No 371
>PRK06834 hypothetical protein; Provisional
Probab=96.38 E-value=0.013 Score=61.70 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=35.6
Q ss_pred chhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 335 NFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 335 ~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
.+.+.+++.+|+++.+. +.+++. ++ |++.+|+++.+|.||.|.|....
T Consensus 105 ~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 105 ILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 44455666678888886 766653 33 55678888999999999999764
No 372
>PRK06753 hypothetical protein; Provisional
Probab=96.37 E-value=0.015 Score=59.11 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=29.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+|+|||||.+|.=+|..|++.+.+ |+++.|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-----v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-----VKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-----EEEEecCCc
Confidence 699999999999999999998654 999999875
No 373
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.36 E-value=0.0042 Score=69.89 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 206 EGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 206 ~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+|+|+|||||+.|+..|..|++.+.+ ||++.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~-----VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP-----VTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe-----EEEEecccc
Confidence 568999999999999999999998654 999988753
No 374
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.36 E-value=0.026 Score=53.98 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 207 GKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 207 ~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.-.|+|||+|++|+-+|..+++.+. +|.++.|.+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~-----~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGL-----KVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC-----eEEEEecCCC
Confidence 3579999999999999999998754 5999998764
No 375
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.33 E-value=0.0047 Score=68.52 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=32.3
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
..+|+|+|||+|+.|+.+|..|+..+++ ||++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-----Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-----VTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-----EEEEcccc
Confidence 5789999999999999999999998765 99998764
No 376
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.31 E-value=0.012 Score=61.47 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEE
Q 041145 81 PSHVELLDYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVM 160 (522)
Q Consensus 81 ~~~~~~~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vVi 160 (522)
.+...+-..|...|+++|. .|.-++-|+++.... ++.|-|++..+ .+++.++|-
T Consensus 184 ~DP~~lC~ala~~A~~~GA--~viE~cpV~~i~~~~--------------------~~~~gVeT~~G----~iet~~~VN 237 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGA--LVIENCPVTGLHVET--------------------DKFGGVETPHG----SIETECVVN 237 (856)
T ss_pred cCHHHHHHHHHHHHHhcCc--EEEecCCcceEEeec--------------------CCccceeccCc----ceecceEEe
Confidence 4455566667777888887 688899999988632 34567887777 599999999
Q ss_pred eeecc
Q 041145 161 CIGKF 165 (522)
Q Consensus 161 AtG~~ 165 (522)
|+|.+
T Consensus 238 aaGvW 242 (856)
T KOG2844|consen 238 AAGVW 242 (856)
T ss_pred chhHH
Confidence 99976
No 377
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.30 E-value=0.012 Score=60.39 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=38.2
Q ss_pred cCcchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 332 LPENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 332 ~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+.+.+.+.+++.+++++.+. +.+++. ++ |++++|+++.+|.||.|+|....
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 34455666777788888776 766653 22 66778888999999999999874
No 378
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.30 E-value=0.037 Score=59.37 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.++|+|||||+.|+.+|..| .|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 46899999999999999998 789999999864
No 379
>PRK07045 putative monooxygenase; Reviewed
Probab=96.28 E-value=0.011 Score=60.39 Aligned_cols=50 Identities=10% Similarity=0.130 Sum_probs=36.6
Q ss_pred Ccchhhhcc-cCcEEEEeCc-eeEEec--C----cEEecCCceeeccEEEEeccCCCC
Q 041145 333 PENFFSEAE-KGNILFKRAS-KWWFWS--G----GIEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 333 ~~~~~~~l~-~~~v~v~~~~-i~~~~~--~----~v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
.+-+++.+. .++++++.+. +..++. + .|.+++|+++.+|.||-|.|....
T Consensus 109 ~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 109 RRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 334555554 4678998876 666653 2 377889999999999999998864
No 380
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.0069 Score=63.84 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.8
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
+.++|+|||+|.+|+++|..| .|++|+++|++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356899999999999999999 89999999975
No 381
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.27 E-value=0.056 Score=55.72 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=33.4
Q ss_pred CCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC----ceeec
Q 041145 207 GKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL----HWTLP 250 (522)
Q Consensus 207 ~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~----~~~~p 250 (522)
.++|+|||+|+||.-.|..|.+.+.+ |+++.|++ .|..+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~-----v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHE-----VVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCC-----ceEEEecCCccceEeec
Confidence 58999999999999999999998664 99999984 45554
No 382
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.26 E-value=0.012 Score=57.49 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=28.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.|+|||+|.+|+-+|..|++.+. +|+++.|.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-----~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-----RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----eEEEEeccCC
Confidence 48999999999999999998754 5999998864
No 383
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.21 E-value=0.049 Score=54.02 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHh------CCCCcEEEccC--CCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL------RHYDPLVFEAT--NSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l------~g~~v~v~e~~--~~~GG 46 (522)
.+||+|+|||+.|++.|..| ...++.++|.. +.+++
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 57999999999999999999 46799999987 44443
No 384
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.18 E-value=0.18 Score=52.96 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~ 42 (522)
.++|+|||+|..|+-+|..+ .|. +|+|+++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 46899999999999999987 675 699999864
No 385
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.18 E-value=0.0064 Score=63.02 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=28.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.|+|||+|++|.=+|..|++.+. +|.++.|.+
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~-----~V~llEr~~ 38 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGA-----QVLVIERGN 38 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-----eEEEEEcCC
Confidence 69999999999999999999865 499999875
No 386
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.17 E-value=0.0057 Score=64.97 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIG 45 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~G 45 (522)
+.||+|||||.|||.||..+ .|++|+|+|+....+
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 56999999999999999999 899999999987654
No 387
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.15 E-value=0.042 Score=58.39 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=27.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.|+|||+|.+|+++|..++..+. +|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~-----~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGA-----KTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCC-----CEEEEeccc
Confidence 48999999999999999998865 499998864
No 388
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.13 E-value=0.025 Score=58.14 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=37.0
Q ss_pred cchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 334 ENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 334 ~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+.+++.+++.+++++.+. +.+++. ++ |.++||+++.+|.||-|.|....
T Consensus 116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 345566667788888876 767654 33 67789988999999999998764
No 389
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.12 E-value=0.0077 Score=63.48 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=30.2
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+++|+|+|||+|.+|+++|..|++.+. +|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-----~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-----RVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-----EEEEEeCCc
Confidence 457899999999999999999988764 499987654
No 390
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.12 E-value=0.019 Score=58.58 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=37.0
Q ss_pred cCcchhhhccc-CcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 332 LPENFFSEAEK-GNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 332 ~~~~~~~~l~~-~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+.+.+.+.+.+ .+++++.+. +.+++. ++ |++++|+++.+|.||.|.|....
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 34455566666 489988765 777753 33 67788888999999999998753
No 391
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.11 E-value=0.013 Score=60.13 Aligned_cols=51 Identities=29% Similarity=0.294 Sum_probs=38.1
Q ss_pred cCcchhhhcccCcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 332 LPENFFSEAEKGNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 332 ~~~~~~~~l~~~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+...+.+.+.+.+++++.+. +.+++. ++ |+++||+++.+|.||.|+|....
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 44456666767788888776 777653 22 67788988999999999998754
No 392
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.09 E-value=0.017 Score=59.13 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=39.0
Q ss_pred cCcchhhhcc-cCcEEEEeCc-eeEEecCc----EEec-CCceeeccEEEEeccCCCC
Q 041145 332 LPENFFSEAE-KGNILFKRAS-KWWFWSGG----IEFE-DKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 332 ~~~~~~~~l~-~~~v~v~~~~-i~~~~~~~----v~~~-dG~~~~~D~VI~ATG~~~~ 382 (522)
+...+++.+. .++|+++.+. |+.++.++ ++++ ||+++++|.||-|-|....
T Consensus 106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence 3445566665 4669999977 77776543 7888 9999999999999997653
No 393
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.04 E-value=0.085 Score=52.41 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=33.9
Q ss_pred eEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe--eEEEEECEEEEeeeccCCCCCCCC
Q 041145 103 IKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA--IQWYGFELLVMCIGKFGDIPRMPA 173 (522)
Q Consensus 103 i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~d~vViAtG~~s~~p~~p~ 173 (522)
+.-+++|.+++..+ ++++.++++..+. .++++.|.||+|||.. ..+|+
T Consensus 295 l~~~~ev~~~~~~G--------------------~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~---~~~P~ 344 (436)
T COG3486 295 LLSLSEVQSVEPAG--------------------DGRYRLTLRHHETGELETVETDAVILATGYR---RAVPS 344 (436)
T ss_pred eccccceeeeecCC--------------------CceEEEEEeeccCCCceEEEeeEEEEecccc---cCCch
Confidence 44567888887632 4557888876432 6788999999999954 45554
No 394
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.04 E-value=0.025 Score=57.78 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+|+|||+|.+|+=+|..|++.+. +|+++.|.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~-----~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGA-----SVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCC-----eEEEEeCCCC
Confidence 469999999999999999998764 5999999864
No 395
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.04 E-value=0.0018 Score=57.85 Aligned_cols=39 Identities=28% Similarity=0.555 Sum_probs=34.3
Q ss_pred CcEEEECCCHHHHHHHHHh----CCCCcEEEccCCCCC-cccCC
Q 041145 12 SKIGIIGAGISGIATAKQL----RHYDPLVFEATNSIG-GVWKH 50 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l----~g~~v~v~e~~~~~G-G~w~~ 50 (522)
.||+|||||.+||++|..+ .+++|.|||.+-.+| |.|..
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG 120 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG 120 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc
Confidence 4999999999999999998 678999999987765 67875
No 396
>PRK02106 choline dehydrogenase; Validated
Probab=96.03 E-value=0.0066 Score=65.28 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=29.4
Q ss_pred CCcEEEECCCHHHHHHHHHh---CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL---RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l---~g~~v~v~e~~~ 42 (522)
.+|+||||||.+|+.+|.+| .|++|+|+|+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45999999999999999999 589999999985
No 397
>PRK06184 hypothetical protein; Provisional
Probab=96.02 E-value=0.02 Score=60.72 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=30.4
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
-.|+|||+|.+|+=+|..|++.+.+ |+++.|.+.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~-----v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS-----FRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 4699999999999999999998754 999999875
No 398
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.01 E-value=0.16 Score=53.31 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEAT 41 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~ 41 (522)
.++|+|||+|..|+-+|..+ .|. +|++++..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 46899999999999999876 554 68876654
No 399
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.96 E-value=0.036 Score=55.51 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=34.3
Q ss_pred cchhhhcccCcEEEEeCc-eeEEec--Cc---EEecCCceeeccEEEEeccCCCCc
Q 041145 334 ENFFSEAEKGNILFKRAS-KWWFWS--GG---IEFEDKSKLEADVVLLATGYDGKK 383 (522)
Q Consensus 334 ~~~~~~l~~~~v~v~~~~-i~~~~~--~~---v~~~dG~~~~~D~VI~ATG~~~~~ 383 (522)
..+.+.+++.+++++.+. +.++.. ++ |.+++|+ +.+|.||+|+|.....
T Consensus 151 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 151 QALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 345566666789999994 877763 33 7788887 9999999999997653
No 400
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.96 E-value=0.02 Score=53.20 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=27.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+.+|||||..|+-.|..|+...+. .+|.++..++
T Consensus 1 kfivvgggiagvscaeqla~~~ps---a~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPS---AEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCC---CcEEEEeccH
Confidence 368999999999999999998764 4677776554
No 401
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.95 E-value=0.21 Score=54.84 Aligned_cols=32 Identities=6% Similarity=0.132 Sum_probs=26.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~ 42 (522)
.++|+|||+|..|+-+|..+ .|. +|+++.+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 46899999999999999876 675 699988764
No 402
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.024 Score=58.84 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=29.7
Q ss_pred CCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 207 GKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 207 ~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
-.+|+|||+|.||+=+|..|.+.+.. .+.++.+..
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~----~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVP----DFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCC----cEEEEEccC
Confidence 36899999999999999999998753 288888874
No 403
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.88 E-value=0.3 Score=53.54 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~ 42 (522)
.++|+|||+|..|+-+|..+ .|. +|+|+.+++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46999999999999999998 665 699998763
No 404
>PRK07190 hypothetical protein; Provisional
Probab=95.87 E-value=0.029 Score=59.07 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=29.8
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
-.|+|||+|++|.=+|.+|++.+. +|.++.|.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi-----~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGL-----NTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-----CEEEEeCCCc
Confidence 469999999999999999998765 4999999874
No 405
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.82 E-value=0.038 Score=56.44 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=34.8
Q ss_pred hhhhcc-cCcEEEEeCc-eeEEec--C--cEEecCCceeeccEEEEeccCCCC
Q 041145 336 FFSEAE-KGNILFKRAS-KWWFWS--G--GIEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 336 ~~~~l~-~~~v~v~~~~-i~~~~~--~--~v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+++.+. .++++++.+. +.+++. + .|+++||+++++|.||-|+|....
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 334443 3578888776 766653 3 278889999999999999999765
No 406
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.81 E-value=0.019 Score=52.72 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=30.5
Q ss_pred ccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 204 LLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 204 ~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
+.++|+|+|||||..|.-.+..|.+.+. +|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga-----~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA-----HIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-----eEEEEcCC
Confidence 3688999999999999999999998765 49998643
No 407
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.73 E-value=0.035 Score=56.53 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=36.2
Q ss_pred cCcchhhhccc-CcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 332 LPENFFSEAEK-GNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 332 ~~~~~~~~l~~-~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+...+++.+.+ ++++++.+. +.+++. ++ +.++||+++.+|.||.|.|....
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 34445555544 448888876 776653 33 66789988999999999998754
No 408
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.72 E-value=0.015 Score=55.58 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=26.7
Q ss_pred eeEEec--CcEEecCCceeeccEEEEeccCCCCc
Q 041145 352 KWWFWS--GGIEFEDKSKLEADVVLLATGYDGKK 383 (522)
Q Consensus 352 i~~~~~--~~v~~~dG~~~~~D~VI~ATG~~~~~ 383 (522)
+.++++ +.|++.+|++|..|.+|.|+|.+.++
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDY 147 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceecc
Confidence 345544 56999999999999999999999885
No 409
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.72 E-value=0.031 Score=58.20 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=36.0
Q ss_pred cccCcchhhhcccCcEEEEeCceeEE--ecCc----EEecCCceeeccEEEEeccCCCC
Q 041145 330 AILPENFFSEAEKGNILFKRASKWWF--WSGG----IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 330 ~~~~~~~~~~l~~~~v~v~~~~i~~~--~~~~----v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
..+..-+.+...+.+|+++.+.|..+ ++++ |++++|.++++|.+|=|||++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 34455556666667899999886544 3443 77889999999999999999754
No 410
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.69 E-value=0.0075 Score=60.17 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=35.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
.+|++|||+|..||++|..| .|.+|+++|++..+||--.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaav 54 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAV 54 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCccee
Confidence 67999999999999999999 8999999999988877543
No 411
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.041 Score=52.86 Aligned_cols=34 Identities=29% Similarity=0.478 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
...|-|||||.||-.||.++ .|++|.++|-++.-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 45799999999999999999 99999999987643
No 412
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.67 E-value=0.032 Score=57.55 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=29.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+|+|||+|.+|+=+|..|++.+. .+|+++.|.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~----~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSH----LNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC----CCEEEEecCCc
Confidence 79999999999999999998753 14999999875
No 413
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.67 E-value=0.013 Score=59.74 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~ 49 (522)
.+||+|||||..|-.+|.-. .|+++.++|+++.--|+-.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 47999999999999999988 9999999999887666554
No 414
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.67 E-value=0.019 Score=53.05 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=28.3
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEe
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVI 242 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~ 242 (522)
.++++|+|||||..|..=+..|.+.+.. ||++.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-----VtVVa 55 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCY-----VYILS 55 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEEc
Confidence 5689999999999999988888887654 99985
No 415
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.67 E-value=0.013 Score=59.84 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=29.5
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+|+|||||.+|+=+|..|++.+. +|+++.|.+.
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~-----~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGL-----RVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-----eEEEEecCCC
Confidence 69999999999999999998764 5999999875
No 416
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.64 E-value=0.0082 Score=63.20 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=32.0
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
..+++|+|||+|.+|+.+|..|++.+. +|+++.+.+.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-----~V~v~e~~~~ 177 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGH-----TVTVFEREDR 177 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-----eEEEEecCCC
Confidence 357899999999999999999998765 4999988763
No 417
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.052 Score=54.72 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.2
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
.++|+|||||.||..||.+. .|.+.+++-.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 46999999999999999888 78887777654
No 418
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.57 E-value=0.035 Score=56.98 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=30.4
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
++|+|||||.+|+=+|..|++.+. +|+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~-----~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW-----AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-----cEEEEecCCc
Confidence 789999999999999999998765 4999999874
No 419
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.53 E-value=0.035 Score=61.31 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=34.0
Q ss_pred ccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 204 LLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 204 ~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
...||||+|||+|++|.-.|..|.+.++. ||+..|+.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~-----v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHT-----VTVYERSDR 1819 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcE-----EEEEEecCC
Confidence 35799999999999999999999999775 999999864
No 420
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.52 E-value=0.049 Score=55.75 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=34.4
Q ss_pred cchhhhccc-CcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 334 ENFFSEAEK-GNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 334 ~~~~~~l~~-~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
..+++.+.+ .+++++.+. +.++.. ++ |++++|.++.+|.||.|+|....
T Consensus 116 ~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 344555544 568888765 666643 33 66778888999999999998754
No 421
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.034 Score=54.47 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=30.2
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+|.|||+|++|+=.|..|.+... ..+|+++.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~---~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHP---NAHVDIFEKLPV 56 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCC---CCeeEeeecCCc
Confidence 499999999999999999988522 357999998875
No 422
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.34 E-value=0.12 Score=59.34 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=62.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELL 87 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (522)
.++|+|||+|+.|+.+|..| .|. .|+|+|..+.+ .
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------~ 354 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------S 354 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch------------------------------------------h
Confidence 36899999999999999999 775 57888875321 0
Q ss_pred HHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEe-CCeeEEEEECEEEEeeeccC
Q 041145 88 DYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVET-NQAIQWYGFELLVMCIGKFG 166 (522)
Q Consensus 88 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~d~vViAtG~~s 166 (522)
..+...+++.++ .+..++.|+.+.. +. ..-.|++.. ..+.+++.+|.|+++.|.
T Consensus 355 ~~l~~~L~~~GV--~i~~~~~v~~i~g--~~-------------------~v~~V~l~~~~g~~~~i~~D~V~va~G~-- 409 (985)
T TIGR01372 355 PEARAEARELGI--EVLTGHVVAATEG--GK-------------------RVSGVAVARNGGAGQRLEADALAVSGGW-- 409 (985)
T ss_pred HHHHHHHHHcCC--EEEcCCeEEEEec--CC-------------------cEEEEEEEecCCceEEEECCEEEEcCCc--
Confidence 112233456677 6888888888864 21 111244442 112357899999999994
Q ss_pred CCCCC
Q 041145 167 DIPRM 171 (522)
Q Consensus 167 ~~p~~ 171 (522)
.|+.
T Consensus 410 -~Pnt 413 (985)
T TIGR01372 410 -TPVV 413 (985)
T ss_pred -Cchh
Confidence 4654
No 423
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.30 E-value=0.07 Score=58.65 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=29.4
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.+|+|||+|.+|+=+|..|++.+. +|+++.|..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-----~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-----QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-----eEEEEecCC
Confidence 589999999999999999999865 499999863
No 424
>PRK08244 hypothetical protein; Provisional
Probab=95.28 E-value=0.04 Score=58.28 Aligned_cols=33 Identities=30% Similarity=0.225 Sum_probs=29.8
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.|+|||+|++|.=+|..|++.+.+ |+++.|.+.
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~-----v~viEr~~~ 36 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVK-----TCVIERLKE 36 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc-----EEEEecCCC
Confidence 599999999999999999998654 999999875
No 425
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.28 E-value=0.019 Score=61.24 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
++|+||||+|.+|..+|.+| .+++|+|+|+..
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 67999999999999999999 899999999984
No 426
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.27 E-value=0.018 Score=59.58 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=32.7
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
..+|+|+|||+|+-|...|..|+..++. ||++.|.+.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~-----Vtv~e~~~~ 157 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHD-----VTVFERVAL 157 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCe-----EEEeCCcCC
Confidence 5679999999999999999999999765 999888753
No 427
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.25 E-value=0.046 Score=55.90 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=27.9
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
.|+|||+|++|.=+|..|++.+. +|.++.++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~-----~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI-----ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-----cEEEEECC
Confidence 49999999999999999998865 49999987
No 428
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.24 E-value=0.052 Score=55.82 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=35.7
Q ss_pred cchhhhccc-CcEEEEeCc-eeEEec--C--cEEecCCceeeccEEEEeccCCCC
Q 041145 334 ENFFSEAEK-GNILFKRAS-KWWFWS--G--GIEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 334 ~~~~~~l~~-~~v~v~~~~-i~~~~~--~--~v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
..+++.+.+ ++|+++.+. ++++.. + .|.+++|+++.+|.||-|.|.+..
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 345555544 579988776 666643 2 277889999999999999998653
No 429
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.20 E-value=0.086 Score=54.89 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=29.8
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
-.|+|||+|+.|.=+|..|++.+. +|.++.|++.
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~-----~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGI-----ETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-----cEEEEecCCC
Confidence 479999999999999999998865 4999999754
No 430
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.19 E-value=0.02 Score=57.31 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=28.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+|+|||+|.+|+=+|..|++.+. +|+++.|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~-----~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGI-----DVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTC-----EEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhccc-----ccccchhccc
Confidence 59999999999999999999875 4999999875
No 431
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.19 E-value=0.021 Score=58.04 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=28.6
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
+||+|||+|++|+++|..+ .|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3899999999999999999 899999999874
No 432
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.16 E-value=0.033 Score=57.12 Aligned_cols=48 Identities=25% Similarity=0.218 Sum_probs=33.8
Q ss_pred CcchhhhcccCcEEEEeCc-eeEEecC--c--EEecCCceeeccEEEEeccCCC
Q 041145 333 PENFFSEAEKGNILFKRAS-KWWFWSG--G--IEFEDKSKLEADVVLLATGYDG 381 (522)
Q Consensus 333 ~~~~~~~l~~~~v~v~~~~-i~~~~~~--~--v~~~dG~~~~~D~VI~ATG~~~ 381 (522)
-+.+.+.+++.+++++.+. +.++..+ . |.+ ++.++.+|.||+|||-..
T Consensus 108 ~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 108 LDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3455666777788888876 6666542 2 333 566789999999999754
No 433
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.16 E-value=0.025 Score=57.54 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHh-CCCCcEEEccCCCC
Q 041145 13 KIGIIGAGISGIATAKQL-RHYDPLVFEATNSI 44 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~~ 44 (522)
+|+|||+|.|||++|..| ..++|+|+-|.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 899999999999999999 66999999997643
No 434
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.15 E-value=0.067 Score=54.71 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=35.1
Q ss_pred cchhhhcccC-cEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 334 ENFFSEAEKG-NILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 334 ~~~~~~l~~~-~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
..+.+.+++. +++++.+. +.++.. ++ |.+++|+++.+|.||.|.|....
T Consensus 116 ~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 116 LALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 3445555544 78888765 666643 23 66778888999999999999764
No 435
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.06 E-value=0.019 Score=61.36 Aligned_cols=31 Identities=39% Similarity=0.416 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHh--CC-CCcEEEccCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RH-YDPLVFEATNS 43 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g-~~v~v~e~~~~ 43 (522)
|+||||||.+|+.+|.+| .+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 689999999999999999 55 79999999853
No 436
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.95 E-value=0.93 Score=49.61 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=26.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~ 42 (522)
.++|+|||+|..|+-+|..+ .|. +|+++.+++
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999876 664 799998864
No 437
>PRK08013 oxidoreductase; Provisional
Probab=94.94 E-value=0.05 Score=55.86 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=36.9
Q ss_pred cCcchhhhccc-CcEEEEeCc-eeEEec--Cc--EEecCCceeeccEEEEeccCCCC
Q 041145 332 LPENFFSEAEK-GNILFKRAS-KWWFWS--GG--IEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 332 ~~~~~~~~l~~-~~v~v~~~~-i~~~~~--~~--v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
+...+++.+.+ ++|+++.+. +.+++. ++ |.++||+++.+|.||-|.|.+..
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 33445555555 478988876 666643 33 66789999999999999998754
No 438
>PRK11445 putative oxidoreductase; Provisional
Probab=94.94 E-value=0.1 Score=52.47 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=28.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.|+|||+|++|.=+|..|++. .+ |+++.|.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~-----V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK-----VIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC-----EEEEECCCc
Confidence 599999999999999999886 54 999999875
No 439
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.93 E-value=0.034 Score=59.55 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=30.2
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+|+|||+|.+|+=+|..|++.+. +|+++.|.+.
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~-----~v~v~Er~~~ 44 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGV-----RVLVLERWPT 44 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-----cEEEEecCCC
Confidence 579999999999999999999865 4999999874
No 440
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.91 E-value=0.19 Score=51.15 Aligned_cols=34 Identities=24% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 207 GKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 207 ~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
..+|+|||+|.+|+=+|..|++.+.+ |+++.+..
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~-----V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGAD-----VTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCE-----EEEEecCc
Confidence 36899999999999999999998754 99998764
No 441
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.90 E-value=0.076 Score=54.48 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=29.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+|+|||+|++|+-+|..+++.+. +|.++.|++.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-----~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-----QTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-----cEEEEecCCC
Confidence 69999999999999999999865 4999998753
No 442
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.89 E-value=0.03 Score=53.77 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC--CCCcccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN--SIGGVWK 49 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~--~~GG~w~ 49 (522)
..+|+|||||.+||.+|.+| .|.+|+|+|+.. .+||.-.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 56999999999999999999 899999999764 5777533
No 443
>PLN02785 Protein HOTHEAD
Probab=94.79 E-value=0.03 Score=60.13 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHh-CCCCcEEEccCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL-RHYDPLVFEATNS 43 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l-~g~~v~v~e~~~~ 43 (522)
.+|++|||||.+|+.+|.+| .+.+|+|+|+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 57999999999999999999 7789999999863
No 444
>PRK10015 oxidoreductase; Provisional
Probab=94.79 E-value=0.047 Score=56.57 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=29.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.|+|||+|++|.=+|..|++.+. +|.++.|.+.
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~-----~VlliEr~~~ 39 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGL-----DVLVIERGDS 39 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-----eEEEEecCCC
Confidence 69999999999999999999765 4999999864
No 445
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.75 E-value=0.27 Score=51.57 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=28.3
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+.|+|||+|.+|+=.|..+++.+. +|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~-----~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGF-----DVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-----eEEEEeCCC
Confidence 469999999999999999998754 499998864
No 446
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.74 E-value=0.095 Score=55.90 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=34.6
Q ss_pred ccCcEEEEeCc-eeEEecC--cEEecCCceeeccEEEEeccCCCC
Q 041145 341 EKGNILFKRAS-KWWFWSG--GIEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 341 ~~~~v~v~~~~-i~~~~~~--~v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
++.+|+++++. +..+..+ .|+.++|.++.+|-+|+|||..|-
T Consensus 70 ~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 70 EENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred HHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 46789999988 7777654 377778899999999999999876
No 447
>PRK06996 hypothetical protein; Provisional
Probab=94.68 E-value=0.07 Score=54.76 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=29.8
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcC-CCCCCcEEEEeecC
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQ-GPNGQPCTMVIRTL 245 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~-~~~~~~Vt~v~R~~ 245 (522)
..|+|||||.+|.=+|..|++.+. + +.+|+++.+.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~--g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATR--ALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcC--CceEEEecCCC
Confidence 579999999999999999998752 1 24699999875
No 448
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.64 E-value=0.29 Score=49.63 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=26.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeec
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRT 244 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~ 244 (522)
.|+|||||-.|||.|...++.|.. .+++..+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~-----TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGAR-----TLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCc-----eEEeecc
Confidence 599999999999999999998765 6666554
No 449
>PRK06126 hypothetical protein; Provisional
Probab=94.63 E-value=0.028 Score=60.31 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=30.4
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+|+|||+|.+|+=+|..|++.+.+ |+++.|.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~-----v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVD-----SILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-----EEEEeCCCC
Confidence 5799999999999999999998654 999999864
No 450
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=0.077 Score=54.70 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.6
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.|+|||||-.|+|.|...++.+.. +.++.-..
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~k-----tlLlT~~~ 37 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAK-----TLLLTLNL 37 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCe-----EEEEEcCC
Confidence 599999999999999999998754 77776553
No 451
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.60 E-value=0.33 Score=50.96 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=28.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEee
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIR 243 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R 243 (522)
.|+|||||..|+-+|..|++... +.+|+++.|
T Consensus 8 DvvIIGgGI~G~sla~~L~~~~~---~~~V~vlEr 39 (497)
T PRK13339 8 DVVLVGAGILSTTFGVLLKELDP---DWNIEVVER 39 (497)
T ss_pred CEEEECchHHHHHHHHHHHhCCC---CCeEEEEEc
Confidence 59999999999999999999743 357999999
No 452
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.59 E-value=0.032 Score=55.16 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=41.3
Q ss_pred CcchhhhcccCcEEEEeCc-eeEEec--CcEEecCCceeeccEEEEeccCCCCc
Q 041145 333 PENFFSEAEKGNILFKRAS-KWWFWS--GGIEFEDKSKLEADVVLLATGYDGKK 383 (522)
Q Consensus 333 ~~~~~~~l~~~~v~v~~~~-i~~~~~--~~v~~~dG~~~~~D~VI~ATG~~~~~ 383 (522)
+.+=+....+|+|.+.++. +.+++. +.|+|.||++|.+|-.++|||-+|..
T Consensus 260 speDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 260 SPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKK 313 (659)
T ss_pred ChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCccc
Confidence 3333455678999999998 777764 45999999999999999999999873
No 453
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.55 E-value=0.22 Score=51.20 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=60.4
Q ss_pred EEECCCHHHHHHH-H---Hh---CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHH
Q 041145 15 GIIGAGISGIATA-K---QL---RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELL 87 (522)
Q Consensus 15 vIIGaG~aGl~~a-~---~l---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (522)
+|++-|.-|+..+ . .| .|.+|++++..+. ..+..++.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp------------------------------------slpG~rL~ 262 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP------------------------------------SVPGLRLQ 262 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC------------------------------------CCchHHHH
Confidence 5677777787666 2 22 5889999877532 12334677
Q ss_pred HHHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeecc
Q 041145 88 DYLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKF 165 (522)
Q Consensus 88 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~ 165 (522)
+.+....++.+. .+..+++|++++..+ ++-.+....+.....+.+|.||+|+|.+
T Consensus 263 ~aL~~~l~~~Gv--~I~~g~~V~~v~~~~---------------------~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 263 NALRRAFERLGG--RIMPGDEVLGAEFEG---------------------GRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHhCCC--EEEeCCEEEEEEEeC---------------------CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 777777777777 788999999998621 1112222222223468999999999954
No 454
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.52 E-value=0.8 Score=49.35 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CC-CCcEEEccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RH-YDPLVFEAT 41 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g-~~v~v~e~~ 41 (522)
.++|+|||+|..|+-+|..+ .+ .+|+|+.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 46899999999999998876 55 568888775
No 455
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=94.47 E-value=0.035 Score=57.50 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=25.2
Q ss_pred EEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 210 VAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 210 V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
|+|||||.+|+=.|..+++.+. +|.++.|.+.
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~-----~VlLiE~~~~ 33 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGA-----KVLLIEKGGF 33 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS------EEEE-SSSS
T ss_pred EEEECccHHHHHHHHHHHHCCC-----EEEEEECCcc
Confidence 8999999999999999999865 4999998764
No 456
>PRK07538 hypothetical protein; Provisional
Probab=94.44 E-value=0.15 Score=52.62 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=29.4
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+|+|||+|.+|+=+|..|++.+. +|+++.|.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~-----~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI-----EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-----cEEEEEcCCc
Confidence 69999999999999999998865 4999999874
No 457
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.43 E-value=0.15 Score=51.74 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=28.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
+|+|||||.+|.=+|..|++.+. +|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~-----~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGI-----KTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCC-----eEEEecCCC
Confidence 59999999999999999998765 499999874
No 458
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.47 Score=46.51 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=63.8
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++|+|||+|-+.+-.|..| .+-+|+++=|++.+ ...+.+.+
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~------------------------------------ra~~~~~~ 186 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF------------------------------------RAEEILVE 186 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc------------------------------------CcCHHHHH
Confidence 45999999999999999999 56679999776432 22333333
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeC-CeeEEEEECEEEEeeeccCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETN-QAIQWYGFELLVMCIGKFGD 167 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~vViAtG~~s~ 167 (522)
-+.+.. ++ .+.+++.+..+.- +. .-.|++++. +....+.+|.|.++.|+
T Consensus 187 ~l~~~~---~i--~~~~~~~i~ei~G--~~--------------------v~~v~l~~~~~~~~~~~~~gvf~~iG~--- 236 (305)
T COG0492 187 RLKKNV---KI--EVLTNTVVKEILG--DD--------------------VEGVVLKNVKGEEKELPVDGVFIAIGH--- 236 (305)
T ss_pred HHHhcC---Ce--EEEeCCceeEEec--Cc--------------------cceEEEEecCCceEEEEeceEEEecCC---
Confidence 333211 34 6778888888865 21 113666654 22457999999999994
Q ss_pred CCCC
Q 041145 168 IPRM 171 (522)
Q Consensus 168 ~p~~ 171 (522)
.|+.
T Consensus 237 ~p~~ 240 (305)
T COG0492 237 LPNT 240 (305)
T ss_pred CCch
Confidence 3654
No 459
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.14 Score=46.52 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=30.3
Q ss_pred ccCcEEEEeCceeEEecCc---EEecCCceeeccEEEEeccCCCCc
Q 041145 341 EKGNILFKRASKWWFWSGG---IEFEDKSKLEADVVLLATGYDGKK 383 (522)
Q Consensus 341 ~~~~v~v~~~~i~~~~~~~---v~~~dG~~~~~D~VI~ATG~~~~~ 383 (522)
.+-+.++.+.+|.+++-.+ ..++|...+.+|.||+|||-....
T Consensus 81 ~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 81 ERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKR 126 (322)
T ss_pred HhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceee
Confidence 3445666766666665443 445677778999999999998763
No 460
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=94.28 E-value=0.021 Score=53.75 Aligned_cols=36 Identities=44% Similarity=0.660 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CC------CCcEEEccCCCCCc
Q 041145 11 SSKIGIIGAGISGIATAKQL--RH------YDPLVFEATNSIGG 46 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g------~~v~v~e~~~~~GG 46 (522)
+++|+|+|||+-|+++|..| ++ ++|+|||...-.||
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 57999999999999999999 33 68999998776554
No 461
>PRK13984 putative oxidoreductase; Provisional
Probab=94.06 E-value=1.5 Score=47.76 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.4
Q ss_pred CCcEEEECCCHHHHHHHHHh
Q 041145 11 SSKIGIIGAGISGIATAKQL 30 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l 30 (522)
.++|+|||||..|+-+|..|
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l 437 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSM 437 (604)
T ss_pred CCcEEEECCchHHHHHHHHH
Confidence 36899999999999999998
No 462
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=93.77 E-value=0.43 Score=49.26 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=27.2
Q ss_pred EEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 210 VAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 210 V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
|+|||+|.+|+=.|..+++.+. +|.++.+.+.
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~-----~V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGA-----KVLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT------EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcC-----eEEEEEeecc
Confidence 8999999999999999999865 5999998764
No 463
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.64 E-value=0.086 Score=50.05 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=24.7
Q ss_pred CCcEEEECCCHHHHHHHHHh---------CCCCcEEEccC
Q 041145 11 SSKIGIIGAGISGIATAKQL---------RHYDPLVFEAT 41 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l---------~g~~v~v~e~~ 41 (522)
..+|+|||+|.-||++|..+ ...+|+|++-+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 34899999999999999766 23578888765
No 464
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.64 E-value=0.066 Score=47.04 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=27.5
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
+|+|||||..|.++|..| .|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 589999999999999999 899999998863
No 465
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=93.58 E-value=0.15 Score=51.72 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 206 EGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 206 ~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
-.|+++|||||.+|++.|.+|++.|- +|+++.+.|.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~-----~v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGF-----KVYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCC-----eEEEEecCCc
Confidence 35899999999999999999999865 4999999875
No 466
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.52 E-value=0.076 Score=46.56 Aligned_cols=34 Identities=32% Similarity=0.196 Sum_probs=29.9
Q ss_pred ccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEe
Q 041145 204 LLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVI 242 (522)
Q Consensus 204 ~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~ 242 (522)
+.+|++|+|||||..|...+..|.+.+.. |+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-----V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-----VTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCE-----EEEEc
Confidence 46899999999999999999999988654 99884
No 467
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.51 E-value=0.086 Score=45.82 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=27.3
Q ss_pred EEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 210 VAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 210 V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
|+|+|+|..|.=+|..|++.+. +|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-----~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-----DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-----EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCC-----ceEEEEccc
Confidence 7899999999999999999655 499998865
No 468
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=93.49 E-value=0.21 Score=51.23 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=29.3
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.|+|||+|++|.-+|..|++.+. +|.++.|++.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~-----~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGL-----DVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCC-----eEEEEecCCC
Confidence 59999999999999999999874 4999999764
No 469
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.47 E-value=0.29 Score=47.62 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=65.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHH
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLD 88 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (522)
.++++|+|||+-++..|--+ .|.++.+|=|.+.+ + +.| .+.+.+
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv-----------L---------------------R~F--D~~i~~ 234 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV-----------L---------------------RGF--DEMISD 234 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh-----------h---------------------cch--hHHHHH
Confidence 56999999999998888877 77788888776532 0 111 123444
Q ss_pred HHHHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCeeEEEEECEEEEeeeccCCC
Q 041145 89 YLHGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQAIQWYGFELLVMCIGKFGDI 168 (522)
Q Consensus 89 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~vViAtG~~s~~ 168 (522)
.+.+-.+..++ +++-++.++.+.+.. ++...+....+. ...+|.|+.|+| ..
T Consensus 235 ~v~~~~~~~gi--nvh~~s~~~~v~K~~--------------------~g~~~~i~~~~~---i~~vd~llwAiG---R~ 286 (478)
T KOG0405|consen 235 LVTEHLEGRGI--NVHKNSSVTKVIKTD--------------------DGLELVITSHGT---IEDVDTLLWAIG---RK 286 (478)
T ss_pred HHHHHhhhcce--eecccccceeeeecC--------------------CCceEEEEeccc---cccccEEEEEec---CC
Confidence 44444455566 677788888887733 233344444442 455999999999 45
Q ss_pred CCCCC
Q 041145 169 PRMPA 173 (522)
Q Consensus 169 p~~p~ 173 (522)
|+.-.
T Consensus 287 Pntk~ 291 (478)
T KOG0405|consen 287 PNTKG 291 (478)
T ss_pred CCccc
Confidence 66543
No 470
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=93.42 E-value=0.35 Score=50.29 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=36.4
Q ss_pred Ccchhhhccc-C--cEEEEeCc-eeEEe---------cC--cEEecCCceeeccEEEEeccCCCC
Q 041145 333 PENFFSEAEK-G--NILFKRAS-KWWFW---------SG--GIEFEDKSKLEADVVLLATGYDGK 382 (522)
Q Consensus 333 ~~~~~~~l~~-~--~v~v~~~~-i~~~~---------~~--~v~~~dG~~~~~D~VI~ATG~~~~ 382 (522)
...+++.+++ + +|+++.+. +.+++ ++ .|.+.+|+++.+|.||-|-|....
T Consensus 120 ~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 120 QNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 3344555554 3 59998877 66664 12 367889999999999999999865
No 471
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.40 E-value=0.069 Score=39.45 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=25.7
Q ss_pred EECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 212 IIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 212 VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
|||+|.+|+-.|..|++.+. +|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-----~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-----RVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-----EEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-----cEEEEecCcc
Confidence 89999999999999999854 5999999864
No 472
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.29 E-value=0.35 Score=46.70 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=33.1
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCceeecCC
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHWTLPSY 252 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~~~p~~ 252 (522)
+.|-|||+|..|.|.|.++++.+. +|.+...+|.-..|..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv-----~V~L~EMRp~k~TpaH 43 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGV-----PVILYEMRPVKGTPAH 43 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCC-----cEEEEEcccccCCCcc
Confidence 579999999999999999999865 4999988876554443
No 473
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.27 E-value=0.034 Score=44.98 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=29.2
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.++|+|+|||+|..|..-+..|.+.+. +||++....
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA-----~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA-----KVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB-----EEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-----EEEEECCch
Confidence 688999999999999999988888764 599997663
No 474
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.26 E-value=0.081 Score=53.89 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=30.8
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCce
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHW 247 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~ 247 (522)
++|+|||||..|+++|..|++.+. +|+++.++|..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl-----~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGV-----PVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-----cEEEEEccCcc
Confidence 579999999999999999999865 49999987754
No 475
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=93.12 E-value=0.22 Score=50.80 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=37.1
Q ss_pred cchhhhcccCcEEEEeCc-eeEEec--Cc---EEecCCce-eeccEEEEeccCCCCc
Q 041145 334 ENFFSEAEKGNILFKRAS-KWWFWS--GG---IEFEDKSK-LEADVVLLATGYDGKK 383 (522)
Q Consensus 334 ~~~~~~l~~~~v~v~~~~-i~~~~~--~~---v~~~dG~~-~~~D~VI~ATG~~~~~ 383 (522)
..+.+.+++.+++++.++ |..++. ++ +.+.+|++ ++++.||.|.|-....
T Consensus 157 ~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 157 RALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 345566777788888887 766653 42 55678877 9999999999988763
No 476
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.10 E-value=0.14 Score=57.11 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=29.2
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
+|+|||+|.+|+=+|..|++.+. +.+|+++.|.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~---G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDP---AHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCC---CCeEEEEecCCC
Confidence 79999999999999999998732 235999999874
No 477
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.81 E-value=0.15 Score=53.24 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=29.4
Q ss_pred ccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEee
Q 041145 204 LLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIR 243 (522)
Q Consensus 204 ~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R 243 (522)
+.++|+|+|||||..|.-=+..|.+.+. +||++..
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-----~v~visp 43 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-----RLTVNAL 43 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-----EEEEEcC
Confidence 3688999999999999988888888765 4999853
No 478
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.77 E-value=0.12 Score=48.37 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
+++|||+|.-|...|+.| .|++|+++|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 799999999999999999 899999999975
No 479
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.76 E-value=0.13 Score=50.19 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=29.9
Q ss_pred ccCCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 9 QYSSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 9 m~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
|..++|+|||+|.-|...|..| .|++|+++|+++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3356899999999999999999 899999999863
No 480
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.75 E-value=0.15 Score=46.82 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
.++|+|||||..|...++.| .|.+|+|+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56999999999999999999 89999999875
No 481
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.69 E-value=0.14 Score=43.63 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=34.2
Q ss_pred ccCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCc
Q 041145 204 LLEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLH 246 (522)
Q Consensus 204 ~~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~ 246 (522)
.+++++|+|||+|-+|--++..|+..+. ++|+++.|+..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~----~~i~i~nRt~~ 47 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGA----KEITIVNRTPE 47 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTS----SEEEEEESSHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCC----CEEEEEECCHH
Confidence 4789999999999999999999999864 47999999863
No 482
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=92.63 E-value=0.11 Score=54.64 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHh---CCCCcEEEccCCCC
Q 041145 11 SSKIGIIGAGISGIATAKQL---RHYDPLVFEATNSI 44 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l---~g~~v~v~e~~~~~ 44 (522)
.+|.+|||||.||...|.+| ...+|+++|+....
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 68999999999999999999 45899999997665
No 483
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=92.61 E-value=0.48 Score=47.36 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=28.3
Q ss_pred CeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 208 KKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 208 k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.+|+|||||.+|+=.|..+.+.+-. |.++.++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~-----v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGID-----VVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCe-----EEEEeecc
Confidence 5799999999999999999998754 88887653
No 484
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.56 E-value=0.099 Score=47.24 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=25.2
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNS 43 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~ 43 (522)
+|+|||.|..||.+|..| .|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 799999999999999999 8999999998754
No 485
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.52 E-value=0.16 Score=52.98 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=31.3
Q ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 205 LEGKKVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 205 ~~~k~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.++|+|+|+|+|.+|..+|..|++.+.. |+++.+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~-----V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAK-----VILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-----EEEEeCCc
Confidence 4679999999999999999999998754 99987754
No 486
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=92.42 E-value=0.12 Score=52.96 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=30.0
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecCce
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTLHW 247 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~~~ 247 (522)
+|+|||||.+|+++|..|++.+. +|+++.+++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~-----~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGV-----PVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-----cEEEEeccccc
Confidence 69999999999999999999865 49999987653
No 487
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.34 E-value=0.12 Score=41.68 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=28.0
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
.++|+|||+|..|..-+..| .|.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 57999999999999999999 88999999987
No 488
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.09 E-value=0.2 Score=43.86 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=28.3
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
+.++|+|||||..|..-|+.| .|.+|+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 467999999999999999998 89999999643
No 489
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=92.06 E-value=0.12 Score=48.87 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=29.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCC-CCCCcEEEEeec
Q 041145 206 EGKKVAIIGYRKSAIDLAVECAEANQG-PNGQPCTMVIRT 244 (522)
Q Consensus 206 ~~k~V~VIG~G~sg~dia~~l~~~~~~-~~~~~Vt~v~R~ 244 (522)
..|+|+|||||.+|+=.|..|+++..- +....||++..+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 348999999999999999999987511 012358888665
No 490
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.04 E-value=0.16 Score=45.71 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=25.6
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
+|+|||||..|...|..+ .|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 589999999999999988 999999999964
No 491
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.86 E-value=0.2 Score=49.37 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.++|+|||+|.-|...|..+ .|++|+++|+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 35899999999999999988 999999999874
No 492
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.75 E-value=2.1 Score=46.25 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=28.1
Q ss_pred eEEEECCCCCHHHHHHHHHHhcCCCCCCcEEEEeecC
Q 041145 209 KVAIIGYRKSAIDLAVECAEANQGPNGQPCTMVIRTL 245 (522)
Q Consensus 209 ~V~VIG~G~sg~dia~~l~~~~~~~~~~~Vt~v~R~~ 245 (522)
.|+|||+|.+|+=.|.++++.+. +.+|+++.+.+
T Consensus 5 DVlVIG~G~AGl~AAi~aa~~g~---g~~V~vleK~~ 38 (575)
T PRK05945 5 DVVIVGGGLAGCRAALEIKRLDP---SLDVAVVAKTH 38 (575)
T ss_pred cEEEECccHHHHHHHHHHHHhcC---CCcEEEEeccC
Confidence 49999999999999999988643 24699998864
No 493
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=0.34 Score=46.93 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=64.6
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCCCcccCCCccCcccccCCCCCcccCCCCCCCCCCCCCCChHHHHHHH
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSIGGVWKHCSFNSTKLQTPRCDFEFSDYPWPERDDASFPSHVELLDYL 90 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 90 (522)
+-+|||||..+|.||--| .|++|+|.=|+--+ +.| ..++.+.+
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L---------------------------------rGF--Dqdmae~v 244 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL---------------------------------RGF--DQDMAELV 244 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec---------------------------------ccc--cHHHHHHH
Confidence 679999999999999999 78899998775211 222 24566777
Q ss_pred HHHHHhcCCcCceEeceEEEEEEEcCCCCcccccCCccccCCCCCCCCCEEEEEEeCCe--eEEEEECEEEEeeecc
Q 041145 91 HGYAVHFDVLKYIKFNSKVVEIRHLGDRDTARVSDTAGEYGSLLKGHPVWEVAVETNQA--IQWYGFELLVMCIGKF 165 (522)
Q Consensus 91 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~d~vViAtG~~ 165 (522)
.+..+.+|+ .+.-.+..+.+++.+ +++..|...+..+ .-+..||.|+.|.|.-
T Consensus 245 ~~~m~~~Gi--kf~~~~vp~~Veq~~--------------------~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 245 AEHMEERGI--KFLRKTVPERVEQID--------------------DGKLRVFYKNTNTGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHHhCC--ceeecccceeeeecc--------------------CCcEEEEeecccccccccchhhhhhhhhccc
Confidence 777777776 333344455666643 3455565544322 2357899999999943
No 494
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.62 E-value=0.2 Score=52.40 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.++|+|||+|..|+++|..| .|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 56899999999999999999 899999999864
No 495
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.60 E-value=0.17 Score=52.93 Aligned_cols=32 Identities=34% Similarity=0.497 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHh--CCCCcEEEccCCCC
Q 041145 13 KIGIIGAGISGIATAKQL--RHYDPLVFEATNSI 44 (522)
Q Consensus 13 ~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~~~ 44 (522)
+|+|||+|.+|+++|+.| .|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 589999999999999998 89999999987543
No 496
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.22 E-value=0.22 Score=48.48 Aligned_cols=31 Identities=39% Similarity=0.637 Sum_probs=28.5
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
.+|+|||+|.-|...|..+ .|++|+++|+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3899999999999999998 999999999974
No 497
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.21 E-value=0.16 Score=52.27 Aligned_cols=32 Identities=38% Similarity=0.587 Sum_probs=27.8
Q ss_pred HHHHHHHHHh--CCCCcEEEccCCCCCcccCCCc
Q 041145 21 ISGIATAKQL--RHYDPLVFEATNSIGGVWKHCS 52 (522)
Q Consensus 21 ~aGl~~a~~l--~g~~v~v~e~~~~~GG~w~~~~ 52 (522)
.|||+||..| .|++|+|||+++.+||......
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~ 34 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFR 34 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEec
Confidence 5899999999 8999999999999999876533
No 498
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.21 E-value=0.22 Score=47.62 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.4
Q ss_pred CCcEEEECCCHHHHHHHHHh--CCC-CcEEEccCC
Q 041145 11 SSKIGIIGAGISGIATAKQL--RHY-DPLVFEATN 42 (522)
Q Consensus 11 ~~~vvIIGaG~aGl~~a~~l--~g~-~v~v~e~~~ 42 (522)
..+|+|||+|-.|..+|..| .|+ +++|+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 56999999999999999999 774 899999863
No 499
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.16 E-value=0.29 Score=44.90 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=28.4
Q ss_pred cCCcEEEECCCHHHHHHHHHh--CCCCcEEEccC
Q 041145 10 YSSKIGIIGAGISGIATAKQL--RHYDPLVFEAT 41 (522)
Q Consensus 10 ~~~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~ 41 (522)
+.++|+|||||-.|...|+.| .|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 357999999999999999998 78999999764
No 500
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.07 E-value=0.24 Score=48.27 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=28.2
Q ss_pred CcEEEECCCHHHHHHHHHh--CCCCcEEEccCC
Q 041145 12 SKIGIIGAGISGIATAKQL--RHYDPLVFEATN 42 (522)
Q Consensus 12 ~~vvIIGaG~aGl~~a~~l--~g~~v~v~e~~~ 42 (522)
++|+|||+|.-|...|..+ .|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 4799999999999999998 899999999864
Done!