BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041146
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%)
Query: 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNY 137
+ +L L L G+IP S+G+L+ L+ + L N G+IP E+ ++ L+ L L +N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 138 LSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181
L+G IPS LS+C L S N L G+IP + LE L I++L
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%)
Query: 77 NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYN 136
N + L + L G IP +G++ L ++NL N+ G IPDE+G L+ L L+L+ N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 137 YLSGSIPSNLSHCRELRVFDTSANGLIGQIPD 168
L G IP +S L D S N L G IP+
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%)
Query: 75 LFNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLT 134
++ + + L L+ L G IP + N T L I+L N G+IP IGRL+ L L L+
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 135 YNYLSGSIPSNLSHCRELRVFDTSANGLIGQIP 167
N SG+IP+ L CR L D + N G IP
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 85 LESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS 144
+ S+ G P+ N + +++ N G IP EIG + L LNL +N +SGSIP
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 145 NLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181
+ R L + D S+N L G+IP +S+L L I L
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 82 ALKLESKQLVGSIPPSV--GNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139
L L S G I P++ L+ + LQ N F G+IP + +L L+L++NYLS
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428
Query: 140 GSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181
G+IPS+L +LR N L G+IP L ++ LE + L
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 42 IDFKSHITQ----DPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQLVGSIPPS 97
+DF ++ + L+++ +SI N VG S + L + ++ G +
Sbjct: 135 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--D 192
Query: 98 VGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157
V L+ +++ NNF IP +G LQ L+++ N LSG +S C EL++ +
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 158 SANGLIGQIPD-RLSSLEKLEI 178
S+N +G IP L SL+ L +
Sbjct: 252 SSNQFVGPIPPLPLKSLQYLSL 273
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 28/118 (23%)
Query: 83 LKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEI-GRLQQLQDLNLTYNYLSGS 141
L + S Q VG IPP L L+ ++L EN F G+IPD + G L L+L+ N+ G+
Sbjct: 249 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 142 IP-------------------------SNLSHCRELRVFDTSANGLIGQIPDRLSSLE 174
+P L R L+V D S N G++P+ L++L
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIP-DEIGRLQQLQDLNLTYN 136
+ +T L L G++PP G+ + L+ + L NNF G++P D + +++ L+ L+L++N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 137 YLSGSIPSNLSH-CRELRVFDTSANGLIGQI 166
SG +P +L++ L D S+N G I
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 83 LKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSI 142
+ L + +L G IP +G L L ++ L N+F G IP E+G + L L+L N +G+I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 143 PS 144
P+
Sbjct: 552 PA 553
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%)
Query: 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNY 137
++ LKL L G IP + + L+ + L N+ G+IP + L ++L+ N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 138 LSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKL 176
L+G IP + L + S N G IP L L
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 41 LIDFKSHITQDPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQL-VG--SIPPS 97
LI FK + ++ W+ + + C + GVTC +++VT++ L SK L VG ++ S
Sbjct: 14 LISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSS 69
Query: 98 VGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP--SNLSHCRELRVF 155
+ +LT L+ + L ++ +G + L L+L+ N LSG + ++L C L+
Sbjct: 70 LLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 128
Query: 156 DTSANGLIGQIPDRLSS---LEKLEIIRL 181
+ S+N L P ++S L LE++ L
Sbjct: 129 NVSSNTL--DFPGKVSGGLKLNSLEVLDL 155
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 103 CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGL 162
C NL E F G +++ RL N+T G + + D S N L
Sbjct: 584 CHGAGNLLE--FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 163 IGQIPDRLSSLEKLEIIRLG 182
G IP + S+ L I+ LG
Sbjct: 642 SGYIPKEIGSMPYLFILNLG 661
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%)
Query: 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNY 137
+ +L L L G+IP S+G+L+ L+ + L N G+IP E+ ++ L+ L L +N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 138 LSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181
L+G IPS LS+C L S N L G+IP + LE L I++L
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%)
Query: 77 NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYN 136
N + L + L G IP +G++ L ++NL N+ G IPDE+G L+ L L+L+ N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 137 YLSGSIPSNLSHCRELRVFDTSANGLIGQIPD 168
L G IP +S L D S N L G IP+
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%)
Query: 75 LFNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLT 134
++ + + L L+ L G IP + N T L I+L N G+IP IGRL+ L L L+
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 135 YNYLSGSIPSNLSHCRELRVFDTSANGLIGQIP 167
N SG+IP+ L CR L D + N G IP
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 85 LESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS 144
+ S+ G P+ N + +++ N G IP EIG + L LNL +N +SGSIP
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 145 NLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181
+ R L + D S+N L G+IP +S+L L I L
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 82 ALKLESKQLVGSIPPSV--GNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139
L L S G I P++ L+ + LQ N F G+IP + +L L+L++NYLS
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 140 GSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181
G+IPS+L +LR N L G+IP L ++ LE + L
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 42 IDFKSHITQ----DPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQLVGSIPPS 97
+DF ++ + L+++ +SI N VG S + L + ++ G +
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--D 195
Query: 98 VGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157
V L+ +++ NNF IP +G LQ L+++ N LSG +S C EL++ +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 158 SANGLIGQIPD-RLSSLEKLEI 178
S+N +G IP L SL+ L +
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSL 276
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 28/118 (23%)
Query: 83 LKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEI-GRLQQLQDLNLTYNYLSGS 141
L + S Q VG IPP L L+ ++L EN F G+IPD + G L L+L+ N+ G+
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 142 IP-------------------------SNLSHCRELRVFDTSANGLIGQIPDRLSSLE 174
+P L R L+V D S N G++P+ L++L
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIP-DEIGRLQQLQDLNLTYN 136
+ +T L L G++PP G+ + L+ + L NNF G++P D + +++ L+ L+L++N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 137 YLSGSIPSNLSH-CRELRVFDTSANGLIGQI 166
SG +P +L++ L D S+N G I
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 83 LKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSI 142
+ L + +L G IP +G L L ++ L N+F G IP E+G + L L+L N +G+I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 143 PS 144
P+
Sbjct: 555 PA 556
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%)
Query: 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNY 137
++ LKL L G IP + + L+ + L N+ G+IP + L ++L+ N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 138 LSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKL 176
L+G IP + L + S N G IP L L
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 41 LIDFKSHITQDPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQL-VG--SIPPS 97
LI FK + ++ W+ + + C + GVTC +++VT++ L SK L VG ++ S
Sbjct: 17 LISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSS 72
Query: 98 VGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP--SNLSHCRELRVF 155
+ +LT L+ + L ++ +G + L L+L+ N LSG + ++L C L+
Sbjct: 73 LLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 156 DTSANGLIGQIPDRLSS---LEKLEIIRL 181
+ S+N L P ++S L LE++ L
Sbjct: 132 NVSSNTL--DFPGKVSGGLKLNSLEVLDL 158
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 103 CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGL 162
C NL E F G +++ RL N+T G + + D S N L
Sbjct: 587 CHGAGNLLE--FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 163 IGQIPDRLSSLEKLEIIRLG 182
G IP + S+ L I+ LG
Sbjct: 645 SGYIPKEIGSMPYLFILNLG 664
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 37 DKLALIDFKSHITQDPLQIMSSWNDSIHFCN--WVGVTCSLFNE--RVTALKLESKQLVG 92
DK AL+ K + +SSW + CN W+GV C + RV L L L
Sbjct: 7 DKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 93 S--IPPSVGNLTCLKVINLQE-NNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHC 149
IP S+ NL L + + NN G IP I +L QL L +T+ +SG+IP LS
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 150 RELRVFDTSANGLIGQIPDRLSSLEKL 176
+ L D S N L G +P +SSL L
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNL 151
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQL-QDLNLTYN 136
+ + L L G++PPS+ +L L I N G IPD G +L + ++ N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 137 YLSGSIPSNLSHCRELRVFDTSANGLIG 164
L+G IP ++ L D S N L G
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 104 LKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSA 159
L ++L+ N +G +P + +L+ L LN+++N L G IP L+ FD SA
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSA 297
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 76 FNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQL 128
++ + L L + ++ G++P + L L +N+ NN G+IP + G LQ+
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 72 TCSLFNERVTALKLESKQLVGSI----PPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQ 127
TC+ + E + L L S L GS+ PP V KV++L N IP ++ LQ
Sbjct: 423 TCA-WAESILVLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMS-IPKDVTHLQA 474
Query: 128 LQDLNLTYNYLSGSIP 143
LQ+LN+ N L S+P
Sbjct: 475 LQELNVASNQLK-SVP 489
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139
VT L L +L ++PP++ L CL+V+ +N D + L +LQ+L L N L
Sbjct: 465 VTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ 521
Query: 140 GSIP-SNLSHCRELRVFDTSANGLIGQ--IPDRLSSL 173
S L C L + + N L + I +RL+ +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139
VT L L +L ++PP++ L CL+V+ +N D + L +LQ+L L N L
Sbjct: 465 VTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ 521
Query: 140 GSIP-SNLSHCRELRVFDTSANGLIGQ--IPDRLSSL 173
S L C L + + N L + I +RL+ +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 93 SIPPSV-GNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP----SNLS 147
S+P V LT L +NL N +L L +L+L+YN L S+P L+
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 148 HCRELRVFDTSANGLIGQIPDRLSSLE 174
++LR++ + + DRL+SL+
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 104 LKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLI 163
LKV+NL N + + L LQ LNL+YN L SN ++ D N I
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-I 350
Query: 164 GQIPDR-LSSLEKLEIIRL 181
I D+ LEKL+ + L
Sbjct: 351 AIIQDQTFKFLEKLQTLDL 369
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 22/81 (27%)
Query: 120 DEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELR----------------------VFDT 157
D L LQ L L +NYL+ P SH LR + D
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDI 533
Query: 158 SANGLIGQIPDRLSSLEKLEI 178
S N L+ PD SL L+I
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDI 554
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 48 ITQDPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVI 107
+T +P+Q S + + G+T SL N KL S + S P +G L LK +
Sbjct: 87 LTGNPIQSFSPGS-------FSGLT-SLENLVAVETKLAS---LESFP--IGQLITLKKL 133
Query: 108 NLQENNFHG-QIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRE 151
N+ N H ++P L L ++L+YNY+ ++L RE
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 48 ITQDPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVI 107
+T +P+Q S + + G+T SL N KL S + S P +G L LK +
Sbjct: 82 LTGNPIQSFSPGS-------FSGLT-SLENLVAVETKLAS---LESFP--IGQLITLKKL 128
Query: 108 NLQENNFHG-QIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRE 151
N+ N H ++P L L ++L+YNY+ ++L RE
Sbjct: 129 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 173
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 93 SIPPSVGN-LTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSN----LS 147
S+P V N LT L +NL N +L QL++L L N L S+P L+
Sbjct: 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLT 124
Query: 148 HCRELRVFDTSANGLIGQIPDRLSSLE 174
++LR++ + + DRL+SL+
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 101 LTCLKVINLQENNFHGQ-IPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSA 159
L+ L+V+ + N+F +PD L+ L L+L+ L P+ + L+V + ++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 160 NGLIG---QIPDRLSSLEKL 176
N L I DRL+SL+K+
Sbjct: 504 NQLKSVPDGIFDRLTSLQKI 523
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139
+T L L QL P + +L+ L+V+N+ NNF L LQ L+ + N++
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 140 GSIPSNLSH 148
S L H
Sbjct: 556 TSKKQELQH 564
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 69 VGVTCSLFNERVTALKLESKQLVGSIPPSV-GNLTCLKVINLQENNFHGQIPDEIGRLQQ 127
+GV L N + L+L+ QL S+PP V +LT L ++L N +L
Sbjct: 102 IGVFDQLVN--LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 128 LQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181
L++L L N L EL+ N L SLEKL++++L
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 60 NDSIHFCNW------------VGVTCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVI 107
N++IH NW GV N RVT L L G +P ++G LT LKV+
Sbjct: 294 NNTIHSLNWNFNKELDXWGDQPGVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVL 352
Query: 108 NL 109
+
Sbjct: 353 SF 354
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139
+T L L QL P + +L+ L+V+N+ NNF L LQ L+ + N++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 140 GSIPSNLSH 148
S L H
Sbjct: 532 TSKKQELQH 540
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 69 VGVTCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQL 128
+CS RV + E ++ SIP + + +NLQEN+ D L+ L
Sbjct: 8 AACSCSNQASRVICTRRELAEVPASIPVNT------RYLNLQENSIQVIRTDTFKHLRHL 61
Query: 129 QDLNLTYNYLS----GSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKL 176
+ L L+ N + G+ + L L +FD + Q + LS L +L
Sbjct: 62 EILQLSKNLVRKIEVGAF-NGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139
+T L L QL P + +L+ L+V+N+ NNF L LQ L+ + N++
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 140 GSIPSNLSH 148
S L H
Sbjct: 237 TSKKQELQH 245
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 40/123 (32%)
Query: 58 SWNDSIHFCNWVGVTCSLFNERVTALKLESKQLVGSI----PPSVGNLTCLKVINLQENN 113
S+++ C+W + + +L + S L +I PP + KV++L N
Sbjct: 387 SYDEKKGDCSWT--------KSLLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNK 432
Query: 114 FHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSL 173
IP ++ +L+ LQ+LN+ N L S+P I DRL+SL
Sbjct: 433 IKS-IPKQVVKLEALQELNVASNQLK-SVPDG--------------------IFDRLTSL 470
Query: 174 EKL 176
+K+
Sbjct: 471 QKI 473
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 69 VGVTCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQL 128
+CS RV + E ++ SIP + + +NLQEN+ D L+ L
Sbjct: 8 AACSCSNQASRVICTRRELAEVPASIPVNT------RYLNLQENSIQVIRTDTFKHLRHL 61
Query: 129 QDLNLTYNYLS----GSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKL 176
+ L L+ N + G+ + L L +FD + Q + LS L +L
Sbjct: 62 EILQLSKNLVRKIEVGAF-NGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g17340
pdb|2Q40|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g17340
Length = 367
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 16 LEFIHVLWMTPGLKSAIIEVDDK-----LALIDFKSHITQDPLQIMSSWND--SIHFCNW 68
LE W+ K A+I VD+ L ++ F + + Q++ + N+ SI+
Sbjct: 200 LENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLAANELPSIN---- 255
Query: 69 VGVTCSLFNERVTALKLESKQLVG 92
+TC+ E ++ LK E+ QL+G
Sbjct: 256 -DITCTELTEILSQLKDENGQLLG 278
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 117 QIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKL 176
IPD++ + LNLT+N L P+N + +L + D N + P+ L L
Sbjct: 18 HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 177 EIIRL 181
+++ L
Sbjct: 76 KVLNL 80
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 76 FNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135
E V +L L + ++ + L+ + L N + D L L+ L+L+Y
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 136 NYLSGSIPSNLSHCRELRVFDTSAN--GLIGQIPDRLSSLEKLEIIRLG 182
NYLS S L + N +G+ S L KL+I+R+G
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVG 157
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 89 QLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSH 148
Q+VGS+ + L+ ++++ + FHG L+ + L+L++N L+G LSH
Sbjct: 472 QMVGSLEILI--LSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSLTGDSMDALSH 521
Query: 149 CRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182
+ L + ++N + P L +L + II L
Sbjct: 522 LKGL-YLNMASNNIRIIPPHLLPALSQQSIINLS 554
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 66 CNWVGVTC--SLFNERVTALKLESKQLVGSIPPSV-GNLTCLKVINLQENNFHGQIPDEI 122
CN G+T + T L+LES +L S+P V LT L ++L +N +PD +
Sbjct: 14 CNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQS-LPDGV 71
Query: 123 -GRLQQLQDLNLTYNYLSGSIPS----NLSHCRELRVFDTSANGLIGQIPDRLSSLEKL 176
+L +L L L N L S+P+ L+ +EL + + I DRL+SL+K+
Sbjct: 72 FDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|1Y1G|X Chain X, Human Formylglycine Generating Enzyme, Double Sulfonic
Acid Form
pdb|1Z70|X Chain X, 1.15a Resolution Structure Of The Formylglycine Generating
Enzyme Fge
Length = 311
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 58 SWNDSIHFCNWVG 70
SWND++ +C W G
Sbjct: 138 SWNDAVAYCTWAG 150
>pdb|1Y1F|X Chain X, Human Formylglycine Generating Enzyme With Cysteine
Sulfenic Acid
pdb|1Y1J|X Chain X, Human Formylglycine Generating Enzyme, Sulfonic
AcidDESULFURATED FORM
Length = 311
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 58 SWNDSIHFCNWVG 70
SWND++ +C W G
Sbjct: 138 SWNDAVAYCTWAG 150
>pdb|1Y1E|X Chain X, Human Formylglycine Generating Enzyme
pdb|1Y1H|X Chain X, Human Formylglycine Generating Enzyme, Oxidised Cys
Refined As Hydroperoxide
pdb|1Y1I|X Chain X, Hyuman Formylglycine Generating Enzyme, Reduced Form
Length = 311
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 58 SWNDSIHFCNWVG 70
SWND++ +C W G
Sbjct: 138 SWNDAVAYCTWAG 150
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 76 FNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135
E V +L L + ++ + L+ + L N + D L L+ L+L+Y
Sbjct: 24 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 83
Query: 136 NYLSGSIPSNLSHCRELRVFDTSAN--GLIGQIPDRLSSLEKLEIIRLG 182
NYLS S L + N +G+ S L KL+I+R+G
Sbjct: 84 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVG 131
>pdb|2AFY|X Chain X, Formylglycine Generating Enzyme C341s Mutant
Length = 286
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 58 SWNDSIHFCNWVG 70
SWND++ +C W G
Sbjct: 125 SWNDAVAYCTWAG 137
>pdb|2AFT|X Chain X, Formylglycine Generating Enzyme C336s Mutant
pdb|2AIJ|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Ctpsr
pdb|2AIK|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
Bound To Substrate Peptide Lctpsra
pdb|2HI8|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Bromide Co- Crystallization
pdb|2HIB|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
Iodide Co- Crystallization
Length = 286
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 58 SWNDSIHFCNWVG 70
SWND++ +C W G
Sbjct: 125 SWNDAVAYCTWAG 137
>pdb|2AII|X Chain X, Wild-Type Formylglycine Generating Enzyme Reacted With
Iodoacetamide
Length = 286
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 58 SWNDSIHFCNWVG 70
SWND++ +C W G
Sbjct: 125 SWNDAVAYCTWAG 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,627,909
Number of Sequences: 62578
Number of extensions: 218015
Number of successful extensions: 539
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 107
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)