Query 041146
Match_columns 182
No_of_seqs 264 out of 2851
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 4.5E-21 9.8E-26 172.9 15.0 146 34-181 27-195 (968)
2 PLN03150 hypothetical protein; 99.8 2.7E-18 5.8E-23 148.4 12.9 145 31-180 367-521 (623)
3 PLN00113 leucine-rich repeat r 99.5 3E-14 6.6E-19 128.8 8.1 104 78-181 140-243 (968)
4 KOG0617 Ras suppressor protein 99.3 5.6E-14 1.2E-18 101.6 -3.7 83 78-163 33-115 (264)
5 PLN03150 hypothetical protein; 99.2 2.3E-11 4.9E-16 105.6 7.3 80 103-182 419-498 (623)
6 KOG0617 Ras suppressor protein 99.2 1.4E-12 3E-17 94.5 -2.7 100 78-180 56-156 (264)
7 PF14580 LRR_9: Leucine-rich r 99.0 4.9E-10 1.1E-14 82.2 4.9 98 78-180 42-146 (175)
8 PF13855 LRR_8: Leucine rich r 99.0 6E-10 1.3E-14 67.7 3.6 59 103-161 2-60 (61)
9 PF13855 LRR_8: Leucine rich r 99.0 6.1E-10 1.3E-14 67.7 3.6 61 78-138 1-61 (61)
10 KOG0472 Leucine-rich repeat pr 99.0 1.5E-10 3.2E-15 93.5 0.7 101 78-182 435-536 (565)
11 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.7E-14 80.1 4.1 99 78-181 19-120 (175)
12 KOG0618 Serine/threonine phosp 98.9 1.7E-10 3.7E-15 100.8 -0.6 101 78-182 383-484 (1081)
13 KOG4194 Membrane glycoprotein 98.9 2.9E-10 6.2E-15 95.6 0.0 98 84-181 251-348 (873)
14 KOG0444 Cytoskeletal regulator 98.9 1.9E-10 4.1E-15 97.6 -1.1 82 79-163 104-186 (1255)
15 KOG0618 Serine/threonine phosp 98.8 1.6E-10 3.6E-15 100.9 -3.8 101 78-182 359-460 (1081)
16 KOG0472 Leucine-rich repeat pr 98.8 1.4E-10 3.1E-15 93.5 -4.3 97 80-180 185-303 (565)
17 KOG4194 Membrane glycoprotein 98.8 8.8E-09 1.9E-13 86.8 5.2 103 78-181 78-180 (873)
18 PF08263 LRRNT_2: Leucine rich 98.8 1.3E-08 2.9E-13 57.3 4.1 40 35-74 2-43 (43)
19 KOG4237 Extracellular matrix p 98.7 7.4E-10 1.6E-14 89.2 -2.2 101 78-179 67-169 (498)
20 KOG0444 Cytoskeletal regulator 98.7 6.2E-10 1.3E-14 94.5 -3.2 100 79-181 269-369 (1255)
21 PLN03210 Resistant to P. syrin 98.6 1.2E-07 2.6E-12 87.8 9.0 101 78-181 611-711 (1153)
22 KOG4658 Apoptotic ATPase [Sign 98.6 2.8E-08 6.1E-13 89.0 3.0 103 78-181 545-649 (889)
23 KOG0532 Leucine-rich repeat (L 98.6 8E-09 1.7E-13 86.7 -0.7 98 79-181 144-241 (722)
24 PRK15370 E3 ubiquitin-protein 98.6 2.2E-07 4.7E-12 82.2 7.7 91 79-181 200-290 (754)
25 PLN03210 Resistant to P. syrin 98.6 3.2E-07 7E-12 85.0 9.1 101 78-182 589-689 (1153)
26 cd00116 LRR_RI Leucine-rich re 98.5 2.6E-08 5.6E-13 79.2 1.6 16 148-163 219-234 (319)
27 cd00116 LRR_RI Leucine-rich re 98.5 2.3E-08 5E-13 79.5 1.0 104 79-182 109-229 (319)
28 PRK15387 E3 ubiquitin-protein 98.5 2.1E-07 4.6E-12 82.3 5.9 70 104-182 384-453 (788)
29 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 79.3 2.4 100 78-181 116-216 (394)
30 PRK15387 E3 ubiquitin-protein 98.4 1.6E-07 3.5E-12 83.0 3.9 83 79-170 383-465 (788)
31 KOG1259 Nischarin, modulator o 98.4 3.7E-08 8E-13 77.4 -0.3 57 80-139 286-342 (490)
32 KOG4237 Extracellular matrix p 98.4 7.5E-08 1.6E-12 77.8 0.9 86 96-181 268-353 (498)
33 KOG4579 Leucine-rich repeat (L 98.4 1.3E-08 2.8E-13 71.3 -3.2 86 78-167 53-139 (177)
34 PF12799 LRR_4: Leucine Rich r 98.4 4.5E-07 9.7E-12 51.3 3.7 36 127-163 2-37 (44)
35 PRK15370 E3 ubiquitin-protein 98.4 1.5E-06 3.3E-11 76.9 8.3 93 78-182 178-270 (754)
36 PF12799 LRR_4: Leucine Rich r 98.4 6.6E-07 1.4E-11 50.6 3.7 40 102-143 1-40 (44)
37 KOG0532 Leucine-rich repeat (L 98.3 1.1E-08 2.3E-13 85.9 -5.8 81 94-178 113-193 (722)
38 COG4886 Leucine-rich repeat (L 98.2 2.9E-07 6.2E-12 75.7 0.6 97 79-179 141-237 (394)
39 KOG4579 Leucine-rich repeat (L 98.1 2.6E-07 5.7E-12 64.8 -1.5 99 78-180 27-129 (177)
40 KOG1259 Nischarin, modulator o 98.1 6E-07 1.3E-11 70.7 0.2 80 98-181 280-359 (490)
41 KOG1859 Leucine-rich repeat pr 98.0 1.7E-07 3.7E-12 81.0 -5.3 98 79-182 165-262 (1096)
42 KOG4658 Apoptotic ATPase [Sign 98.0 3.8E-06 8.3E-11 75.6 2.4 83 78-161 571-653 (889)
43 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4.1E-10 58.8 5.1 102 78-182 42-148 (233)
44 KOG0531 Protein phosphatase 1, 97.8 8.4E-06 1.8E-10 67.8 1.0 97 78-179 95-191 (414)
45 KOG0531 Protein phosphatase 1, 97.7 1.3E-05 2.8E-10 66.6 0.8 98 79-182 73-170 (414)
46 KOG3207 Beta-tubulin folding c 97.5 2.5E-05 5.5E-10 64.2 0.2 85 78-163 222-314 (505)
47 KOG3207 Beta-tubulin folding c 97.5 1.9E-05 4.2E-10 64.8 -0.9 36 127-163 247-284 (505)
48 KOG2123 Uncharacterized conser 97.4 8.3E-06 1.8E-10 63.6 -3.9 98 78-180 19-123 (388)
49 KOG2739 Leucine-rich acidic nu 97.2 0.00026 5.6E-09 54.6 2.3 99 78-180 43-149 (260)
50 KOG1859 Leucine-rich repeat pr 97.1 3.3E-05 7.2E-10 67.3 -3.0 98 78-181 187-286 (1096)
51 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.8E-08 49.3 4.9 95 81-181 22-120 (233)
52 KOG3665 ZYG-1-like serine/thre 97.0 0.00016 3.4E-09 63.9 -0.1 102 78-182 148-258 (699)
53 KOG2739 Leucine-rich acidic nu 97.0 0.0004 8.6E-09 53.6 1.8 60 78-139 65-129 (260)
54 KOG3665 ZYG-1-like serine/thre 96.8 0.0012 2.6E-08 58.4 3.8 58 78-137 173-231 (699)
55 KOG2982 Uncharacterized conser 96.7 0.00036 7.8E-09 55.2 -0.1 85 78-162 71-158 (418)
56 KOG1909 Ran GTPase-activating 96.7 0.00055 1.2E-08 54.9 0.8 38 145-182 208-249 (382)
57 PRK15386 type III secretion pr 96.6 0.0057 1.2E-07 50.8 6.1 59 79-144 53-112 (426)
58 KOG0473 Leucine-rich repeat pr 96.6 3.9E-05 8.4E-10 58.6 -6.3 84 78-164 42-125 (326)
59 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.3E-08 31.5 0.9 11 129-139 3-13 (22)
60 PRK15386 type III secretion pr 96.5 0.0069 1.5E-07 50.3 6.0 33 78-112 72-104 (426)
61 PF00560 LRR_1: Leucine Rich R 96.4 0.0012 2.6E-08 31.3 0.6 22 151-173 1-22 (22)
62 KOG1909 Ran GTPase-activating 96.3 0.00046 1E-08 55.4 -1.9 85 79-163 186-283 (382)
63 KOG2982 Uncharacterized conser 95.8 0.0025 5.3E-08 50.6 0.1 83 100-182 69-154 (418)
64 PF13306 LRR_5: Leucine rich r 95.5 0.078 1.7E-06 36.1 6.7 54 79-134 13-66 (129)
65 PF13504 LRR_7: Leucine rich r 95.2 0.014 3.1E-07 25.7 1.4 9 129-137 4-12 (17)
66 COG5238 RNA1 Ran GTPase-activa 94.7 0.059 1.3E-06 42.5 4.4 42 98-139 88-133 (388)
67 PF13306 LRR_5: Leucine rich r 94.4 0.11 2.5E-06 35.3 5.1 94 78-177 35-129 (129)
68 KOG0473 Leucine-rich repeat pr 94.4 0.00041 9E-09 53.1 -7.7 82 97-181 37-118 (326)
69 COG5238 RNA1 Ran GTPase-activa 93.7 0.16 3.5E-06 40.2 5.1 62 78-139 92-170 (388)
70 smart00370 LRR Leucine-rich re 93.3 0.084 1.8E-06 25.7 2.0 13 127-139 3-15 (26)
71 smart00369 LRR_TYP Leucine-ric 93.3 0.084 1.8E-06 25.7 2.0 13 127-139 3-15 (26)
72 KOG2120 SCF ubiquitin ligase, 92.6 0.013 2.7E-07 46.7 -2.4 39 77-115 233-273 (419)
73 KOG2123 Uncharacterized conser 92.5 0.0064 1.4E-07 47.9 -4.1 76 78-156 41-123 (388)
74 KOG2120 SCF ubiquitin ligase, 89.1 0.029 6.4E-07 44.7 -3.3 80 103-182 186-268 (419)
75 PF13516 LRR_6: Leucine Rich r 88.0 0.067 1.5E-06 25.5 -1.3 10 152-161 4-13 (24)
76 smart00364 LRR_BAC Leucine-ric 85.8 0.53 1.2E-05 23.2 1.2 17 127-144 3-19 (26)
77 KOG3864 Uncharacterized conser 84.4 0.2 4.4E-06 37.7 -0.9 83 78-160 101-186 (221)
78 smart00365 LRR_SD22 Leucine-ri 83.0 1.1 2.4E-05 22.0 1.7 15 149-163 1-15 (26)
79 smart00368 LRR_RI Leucine rich 78.5 1.8 3.8E-05 21.4 1.6 14 150-163 2-15 (28)
80 KOG1947 Leucine rich repeat pr 69.1 1.1 2.4E-05 37.3 -0.9 62 101-162 242-307 (482)
81 KOG3864 Uncharacterized conser 66.2 0.53 1.2E-05 35.5 -2.9 79 103-181 102-183 (221)
82 PF07172 GRP: Glycine rich pro 64.6 3.5 7.7E-05 27.1 1.0 16 8-23 3-18 (95)
83 PF13260 DUF4051: Protein of u 56.5 9.3 0.0002 21.6 1.6 40 9-48 4-43 (54)
84 smart00367 LRR_CC Leucine-rich 36.6 27 0.00058 16.5 1.3 11 126-136 2-12 (26)
85 PF15206 FAM209: FAM209 family 34.9 30 0.00064 24.4 1.8 18 6-23 37-54 (150)
86 KOG3763 mRNA export factor TAP 33.4 23 0.00049 30.9 1.2 60 78-139 218-283 (585)
87 PF10913 DUF2706: Protein of u 32.6 69 0.0015 18.5 2.7 18 6-23 2-19 (60)
88 PF02419 PsbL: PsbL protein; 31.0 63 0.0014 17.1 2.2 17 7-23 14-30 (37)
89 TIGR00864 PCC polycystin catio 29.9 35 0.00076 35.5 2.0 32 84-115 1-32 (2740)
90 PF07436 Curto_V3: Curtovirus 29.1 60 0.0013 20.3 2.2 16 11-26 6-21 (87)
91 CHL00038 psbL photosystem II p 29.1 91 0.002 16.6 2.6 17 7-23 15-31 (38)
92 KOG3763 mRNA export factor TAP 28.6 28 0.0006 30.4 1.0 63 100-165 216-285 (585)
93 TIGR00864 PCC polycystin catio 28.4 39 0.00084 35.2 2.0 13 79-91 20-32 (2740)
94 KOG4308 LRR-containing protein 26.6 1.6 3.5E-05 37.3 -6.7 87 78-164 172-276 (478)
95 PRK00753 psbL photosystem II r 25.8 1.1E+02 0.0024 16.3 2.6 17 7-23 16-32 (39)
96 PF12273 RCR: Chitin synthesis 20.9 29 0.00063 23.9 -0.2 6 10-15 2-7 (130)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=4.5e-21 Score=172.86 Aligned_cols=146 Identities=37% Similarity=0.699 Sum_probs=110.4
Q ss_pred chhHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceeeeCCCCCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCC
Q 041146 34 EVDDKLALIDFKSHITQDPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENN 113 (182)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 113 (182)
.+.|+.+|++||+.+. +|.....+|+...++|.|.|++|+.. ++|+.|++++|++++.++..+..+++|+.|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 3478899999999985 66666789988889999999999853 789999999999998888888889999999999999
Q ss_pred CCCCCccccC-CCCCCcEeeccCCcCCC----------------------ccchhccCCCCCCEEEcccCcCcCCCCccc
Q 041146 114 FHGQIPDEIG-RLQQLQDLNLTYNYLSG----------------------SIPSNLSHCRELRVFDTSANGLIGQIPDRL 170 (182)
Q Consensus 114 l~g~~p~~l~-~l~~L~~L~ls~n~l~g----------------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 170 (182)
++|.+|..+. .+++|++|++++|+++| .+|..++++++|++|++++|.+++.+|..+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 8888887654 66666666666666654 444455555666666666666655556556
Q ss_pred cCCccCCeEec
Q 041146 171 SSLEKLEIIRL 181 (182)
Q Consensus 171 ~~l~~L~~L~L 181 (182)
+++++|++|++
T Consensus 185 ~~l~~L~~L~L 195 (968)
T PLN00113 185 TNLTSLEFLTL 195 (968)
T ss_pred hhCcCCCeeec
Confidence 66666666654
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.78 E-value=2.7e-18 Score=148.40 Aligned_cols=145 Identities=31% Similarity=0.565 Sum_probs=123.1
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCc-----ccceeeeCCC--C--CcEEEEEecCCCCcccCCccccCC
Q 041146 31 AIIEVDDKLALIDFKSHITQDPLQIMSSWNDSIHFC-----NWVGVTCSLF--N--ERVTALKLESKQLVGSIPPSVGNL 101 (182)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~gv~c~~~--~--~~l~~L~l~~n~l~~~~p~~l~~l 101 (182)
..+...|..+|..+|+.+. ++. ..+|.. ++| .|.|+.|... . ..++.|++++|++.|.+|..++.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Ccc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 3455678999999999884 332 247865 345 7999999532 1 258999999999999999999999
Q ss_pred CCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCC-ccCCeEe
Q 041146 102 TCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSL-EKLEIIR 180 (182)
Q Consensus 102 ~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ 180 (182)
++|+.|++++|.+.|.+|+.+..+++|+.|++++|+++|.+|+.++++++|+.|++++|+++|.+|..++.+ .++..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999887653 3444444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=3e-14 Score=128.81 Aligned_cols=104 Identities=33% Similarity=0.560 Sum_probs=65.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|..++++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 44556666666665566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++.+|..++++++|++|++
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEEC
Confidence 666666666666666666666654
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=5.6e-14 Score=101.63 Aligned_cols=83 Identities=31% Similarity=0.551 Sum_probs=62.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.+++|+.|++.-|++. .+|.+|+.++.|++||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 56677777777777 66777777777777777777777 77777777777777777777777 77777777777777777
Q ss_pred ccCcCc
Q 041146 158 SANGLI 163 (182)
Q Consensus 158 ~~N~l~ 163 (182)
..|++.
T Consensus 110 tynnl~ 115 (264)
T KOG0617|consen 110 TYNNLN 115 (264)
T ss_pred cccccc
Confidence 766664
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=2.3e-11 Score=105.57 Aligned_cols=80 Identities=35% Similarity=0.632 Sum_probs=76.9
Q ss_pred CCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 103 CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 103 ~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
.++.|++++|.+.|.+|..+..+++|+.|++++|++.|.+|..++.+++|+.|++++|+++|.+|+.++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-12 Score=94.51 Aligned_cols=100 Identities=28% Similarity=0.515 Sum_probs=61.2
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCC-ccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSG-SIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ 156 (182)
.+++.|++.+|+++ .+|.+++.++.|+.|++..|++. ..|..|+.++.|+.||+.+|++.- .+|..|..++.|+.|+
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 45666777777776 66666777777777777777666 666667777777777776666542 3444444455555555
Q ss_pred cccCcCcCCCCccccCCccCCeEe
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIR 180 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~ 180 (182)
+++|.|. .+|+.++++++|+.|.
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILS 156 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEe
Confidence 5555554 4455555555555543
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=4.9e-10 Score=82.23 Aligned_cols=98 Identities=24% Similarity=0.424 Sum_probs=39.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCcccc-CCCCCCcEeeccCCcCCCccc--hhccCCCCCCE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEI-GRLQQLQDLNLTYNYLSGSIP--SNLSHCRELRV 154 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l-~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~ 154 (182)
.+++.|++++|+++. +. .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++. .+. ..+..+++|++
T Consensus 42 ~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcce
Confidence 456777777777773 32 3666777777777777777 444333 34677777777777776 222 34556777777
Q ss_pred EEcccCcCcCCCCc----cccCCccCCeEe
Q 041146 155 FDTSANGLIGQIPD----RLSSLEKLEIIR 180 (182)
Q Consensus 155 L~L~~N~l~~~~p~----~l~~l~~L~~L~ 180 (182)
|++.+|.++.. +. .+..+|+|+.||
T Consensus 118 L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 118 LSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred eeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 77777777633 22 345667777765
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=6e-10 Score=67.68 Aligned_cols=59 Identities=31% Similarity=0.469 Sum_probs=29.0
Q ss_pred CCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCc
Q 041146 103 CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANG 161 (182)
Q Consensus 103 ~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~ 161 (182)
+|++|++++|+++...+..|..+++|++|++++|++...-|..+.++++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555552222344455555555555555553223345555555555555554
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=6.1e-10 Score=67.65 Aligned_cols=61 Identities=31% Similarity=0.479 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYL 138 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l 138 (182)
++++.|++++|+++...+..|.++++|++|++++|.++...|..|.++++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999966667899999999999999999966667899999999999999975
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.96 E-value=1.5e-10 Score=93.52 Aligned_cols=101 Identities=32% Similarity=0.497 Sum_probs=64.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~ 156 (182)
.+++.|++++|-+. .+|.+++.+..|+.+|++.|++. .+|..+..+..++.+-.+.|++. .++ +.++++++|..||
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceec
Confidence 34555555555544 55555555555555555555555 45554444444444444445544 444 3488888999999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+.+|.+. .+|+.++++++|++|++.
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELD 536 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEec
Confidence 9999988 778889999999988763
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.3e-09 Score=80.08 Aligned_cols=99 Identities=29% Similarity=0.433 Sum_probs=38.2
Q ss_pred CcEEEEEecCCCCcccCCcccc-CCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhc-cCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVG-NLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNL-SHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L 155 (182)
.++++|++++|.++. + +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+++.+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 457899999999983 3 3455 5789999999999999 554 5788999999999999999 776655 468999999
Q ss_pred EcccCcCcCCC-CccccCCccCCeEec
Q 041146 156 DTSANGLIGQI-PDRLSSLEKLEIIRL 181 (182)
Q Consensus 156 ~L~~N~l~~~~-p~~l~~l~~L~~L~L 181 (182)
++++|++...- -..+..+++|++|++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeec
Confidence 99999997421 145678889999886
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.91 E-value=1.7e-10 Score=100.82 Aligned_cols=101 Identities=28% Similarity=0.438 Sum_probs=82.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++.......+.++..|+.|++++|.++ .+|..+..+..|++|...+|++. .+| .+..++.|+++|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 68899999999988333345788899999999999999 88888999999999999999988 888 7889999999999
Q ss_pred ccCcCcCC-CCccccCCccCCeEecC
Q 041146 158 SANGLIGQ-IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~-~p~~l~~l~~L~~L~Ls 182 (182)
+.|+++.. +|... ..++|++||++
T Consensus 460 S~N~L~~~~l~~~~-p~p~LkyLdlS 484 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEAL-PSPNLKYLDLS 484 (1081)
T ss_pred ccchhhhhhhhhhC-CCcccceeecc
Confidence 99999754 34333 33789999885
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.89 E-value=2.9e-10 Score=95.57 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=52.0
Q ss_pred EecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCc
Q 041146 84 KLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLI 163 (182)
Q Consensus 84 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 163 (182)
.+..|++...-...|..|..+++|+|+.|++...-...+.+++.|+.|++|+|.|...-++.+...++|+.|+|++|+++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 33334443333334555555556666666555333344555666666666666665444555555566666666666665
Q ss_pred CCCCccccCCccCCeEec
Q 041146 164 GQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 164 ~~~p~~l~~l~~L~~L~L 181 (182)
...+..|..+..|++|+|
T Consensus 331 ~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cCChhHHHHHHHhhhhcc
Confidence 444445555555555544
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.88 E-value=1.9e-10 Score=97.57 Aligned_cols=82 Identities=29% Similarity=0.383 Sum_probs=40.4
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccc-cCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDE-IGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~-l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.++.||+++|++. ..|..+..-+++-+|++++|++. .||.. +-+++.|-+||+|+|++. .+|+.+..+..|++|+|
T Consensus 104 dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 104 DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhc
Confidence 4445555555554 44444444445555555555554 44433 234444555555555555 45555555555555555
Q ss_pred ccCcCc
Q 041146 158 SANGLI 163 (182)
Q Consensus 158 ~~N~l~ 163 (182)
++|.+.
T Consensus 181 s~NPL~ 186 (1255)
T KOG0444|consen 181 SNNPLN 186 (1255)
T ss_pred CCChhh
Confidence 555443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.82 E-value=1.6e-10 Score=100.94 Aligned_cols=101 Identities=28% Similarity=0.519 Sum_probs=93.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccc-cCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDE-IGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~-l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
+.++.|++.+|.+++..-+.+.++.+|+.|++++|++. .+|.. +.++..|+.|++|+|+++ .+|..+.++..|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 56889999999999988888999999999999999999 77764 678999999999999999 9999999999999999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
..+|++. .+| ++..++.|+.+|+|
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecc
Confidence 9999998 778 79999999999986
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.80 E-value=1.4e-10 Score=93.53 Aligned_cols=97 Identities=29% Similarity=0.474 Sum_probs=56.1
Q ss_pred EEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCC---------------------CCccccC-CCCCCcEeeccCCc
Q 041146 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHG---------------------QIPDEIG-RLQQLQDLNLTYNY 137 (182)
Q Consensus 80 l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g---------------------~~p~~l~-~l~~L~~L~ls~n~ 137 (182)
++.+|...|-+. .+|+.++.|.+|..|++.+|.+.. .+|.... .++++.+||+..|+
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc
Confidence 344444444333 445555555555555555555440 3333322 55666677777777
Q ss_pred CCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEe
Q 041146 138 LSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIR 180 (182)
Q Consensus 138 l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 180 (182)
+. +.|.++.-+++|++||+++|.++ .+|..++++ .|+.|.
T Consensus 264 lk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 264 LK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA 303 (565)
T ss_pred cc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence 77 77777777777777777777776 456666666 555543
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.77 E-value=8.8e-09 Score=86.84 Aligned_cols=103 Identities=23% Similarity=0.239 Sum_probs=68.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
..++.|++++|++...-+..|.++++|+.+++..|.++ .+|.......+++.|++.+|.|+..-.+++..++.|+.+||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34567888888888666677777888888888888877 77766555666777777777776333455666666677777
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+.|.++...-+.|..-.++++|+|
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEee
Confidence 766666333334444455666655
No 18
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.76 E-value=1.3e-08 Score=57.34 Aligned_cols=40 Identities=45% Similarity=0.928 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhccCCCCCCCCCCCCCC--CCCcccceeeeC
Q 041146 35 VDDKLALIDFKSHITQDPLQIMSSWNDS--IHFCNWVGVTCS 74 (182)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~gv~c~ 74 (182)
+.|+++|++||+++..++...+.+|+.+ .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999999999986676789999987 799999999995
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=7.4e-10 Score=89.19 Aligned_cols=101 Identities=23% Similarity=0.307 Sum_probs=82.3
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccC-CcCCCccch-hccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY-NYLSGSIPS-NLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~-n~l~g~~p~-~~~~l~~L~~L 155 (182)
...++|++..|+|+...+..|..+.+|+.|||++|+++..-|..|.++.++..|-+.+ |+|+ .+|+ .|+++.+++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5789999999999977778899999999999999999988889999999987777766 8898 6774 57777777777
Q ss_pred EcccCcCcCCCCccccCCccCCeE
Q 041146 156 DTSANGLIGQIPDRLSSLEKLEII 179 (182)
Q Consensus 156 ~L~~N~l~~~~p~~l~~l~~L~~L 179 (182)
.+.-|++.-.....|..+++|..|
T Consensus 146 llNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchh
Confidence 777777776656666666666544
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.72 E-value=6.2e-10 Score=94.52 Aligned_cols=100 Identities=30% Similarity=0.501 Sum_probs=66.5
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCC-CCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHG-QIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g-~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
+++.|+++.|+++ .+|..+++++.|+.|.+.+|+++- -+|+.++.+..|+++..++|.+. -+|+++..+.+|+.|.|
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 3445555555555 566666666666666666666542 35666666666776666666666 66777777777777777
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+.|++. .+|+.+.-++.|++||+
T Consensus 347 ~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred ccccee-echhhhhhcCCcceeec
Confidence 777776 56777777777777765
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.64 E-value=1.2e-07 Score=87.78 Aligned_cols=101 Identities=24% Similarity=0.328 Sum_probs=66.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++.++++. .++..+..+++|+.++++++...+.+|. +..+++|++|++++|.....+|..++++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 45666666666665 4566666777777777776654445653 666777777777776655577777777777777777
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|...+.+|..+ ++++|+.|++
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeC
Confidence 7765545666544 5666666655
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=2.8e-08 Score=89.04 Aligned_cols=103 Identities=27% Similarity=0.451 Sum_probs=88.4
Q ss_pred CcEEEEEecCCC--CcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEE
Q 041146 78 ERVTALKLESKQ--LVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~--l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L 155 (182)
+.+++|-+.+|. +.......|..|+.|++||+++|.--+.+|..++.+-+|++|++++..+. .+|..+++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 568888888886 44233334778999999999998877799999999999999999999999 999999999999999
Q ss_pred EcccCcCcCCCCccccCCccCCeEec
Q 041146 156 DTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 156 ~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
|+..+.....+|.....+++|++|.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred ccccccccccccchhhhcccccEEEe
Confidence 99988876666777777999999875
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=8e-09 Score=86.67 Aligned_cols=98 Identities=27% Similarity=0.519 Sum_probs=73.7
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.++.+-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.+++..|++. .+|+.+..+ .|..||++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecc
Confidence 4667777777776 67777777777888888888877 67777777777777777777777 677777744 47778888
Q ss_pred cCcCcCCCCccccCCccCCeEec
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
.|+++ .+|-.|.+|+.|++|-|
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred cCcee-ecchhhhhhhhheeeee
Confidence 88887 67878888888887754
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.55 E-value=2.2e-07 Score=82.18 Aligned_cols=91 Identities=24% Similarity=0.500 Sum_probs=46.5
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.++.|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++|++. .+|..+. ++|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 3455555555555 3343332 35555555555555 4444332 24555555555555 5554433 356666666
Q ss_pred cCcCcCCCCccccCCccCCeEec
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+|+++ .+|..+. ++|+.|++
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred CCccC-ccccccC--CCCcEEEC
Confidence 66666 3454332 35555554
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.55 E-value=3.2e-07 Score=84.98 Aligned_cols=101 Identities=20% Similarity=0.323 Sum_probs=84.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|+.++++++.....+|. +..+++|+.|++
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 35778888887776 667666 5789999999999988 7888888999999999998765557775 788999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|.....+|..+.++++|+.|+++
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCC
Confidence 9987777899999999999999874
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.54 E-value=2.6e-08 Score=79.18 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=7.0
Q ss_pred CCCCCCEEEcccCcCc
Q 041146 148 HCRELRVFDTSANGLI 163 (182)
Q Consensus 148 ~l~~L~~L~L~~N~l~ 163 (182)
.+++|++|++++|.++
T Consensus 219 ~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 219 SLKSLEVLNLGDNNLT 234 (319)
T ss_pred ccCCCCEEecCCCcCc
Confidence 3344444444444443
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=2.3e-08 Score=79.47 Aligned_cols=104 Identities=27% Similarity=0.473 Sum_probs=59.1
Q ss_pred cEEEEEecCCCCcc----cCCccccCC-CCCCEEEeeCCCCCCC----CccccCCCCCCcEeeccCCcCCCc----cchh
Q 041146 79 RVTALKLESKQLVG----SIPPSVGNL-TCLKVINLQENNFHGQ----IPDEIGRLQQLQDLNLTYNYLSGS----IPSN 145 (182)
Q Consensus 79 ~l~~L~l~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~l~g~----~p~~l~~l~~L~~L~ls~n~l~g~----~p~~ 145 (182)
+++.|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 36666666666552 222334444 6667777777766632 222344556677777777766632 2333
Q ss_pred ccCCCCCCEEEcccCcCcCC----CCccccCCccCCeEecC
Q 041146 146 LSHCRELRVFDTSANGLIGQ----IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 146 ~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls 182 (182)
+...++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 44556777777777776533 23344566677777664
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.49 E-value=2.1e-07 Score=82.27 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=34.3
Q ss_pred CCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 104 LKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 104 L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.++++
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 444444444444 23321 123445555555554 34432 123455555555555 456666666666666653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=7.2e-08 Score=79.30 Aligned_cols=100 Identities=32% Similarity=0.588 Sum_probs=80.6
Q ss_pred CcEEEEEecCCCCcccCCccccCCC-CCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLT-CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
..++.+++.+|.++ .+++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|++. .+|...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 46888999999988 6777777774 8999999999998 77777889999999999999999 8888777888999999
Q ss_pred cccCcCcCCCCccccCCccCCeEec
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+++|+++ .+|........|+.+.+
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhh
Confidence 9999988 66665444455665544
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.44 E-value=1.6e-07 Score=83.02 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=68.1
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.++.|++++|+++ .+|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.++++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 5667777777776 34543 367999999999999 57764 346888999999999 899999999999999999
Q ss_pred cCcCcCCCCccc
Q 041146 159 ANGLIGQIPDRL 170 (182)
Q Consensus 159 ~N~l~~~~p~~l 170 (182)
+|++++..|..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 999998877655
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=3.7e-08 Score=77.39 Aligned_cols=57 Identities=30% Similarity=0.392 Sum_probs=34.5
Q ss_pred EEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCC
Q 041146 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139 (182)
Q Consensus 80 l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~ 139 (182)
++++|+++|.++ .+.+++.-.+.++.|++++|.+. .+.. +..+++|+.||+++|.++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH
Confidence 456666666666 55555555666666666666665 3322 555666666666666555
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.40 E-value=7.5e-08 Score=77.83 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=74.5
Q ss_pred ccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCcc
Q 041146 96 PSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEK 175 (182)
Q Consensus 96 ~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 175 (182)
..|.++++|++|++++|++++.-+..|.++.+++.|.+..|++...-...+.++..|+.|+|++|+|+..-|..|..+.+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 35889999999999999999877888999999999999999988433456788999999999999999888888888888
Q ss_pred CCeEec
Q 041146 176 LEIIRL 181 (182)
Q Consensus 176 L~~L~L 181 (182)
|..|++
T Consensus 348 l~~l~l 353 (498)
T KOG4237|consen 348 LSTLNL 353 (498)
T ss_pred eeeeeh
Confidence 888765
No 33
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=1.3e-08 Score=71.29 Aligned_cols=86 Identities=22% Similarity=0.427 Sum_probs=67.5
Q ss_pred CcEEEEEecCCCCcccCCcccc-CCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVG-NLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
.+++.+++++|.+. .+|+.|. .++..+.+++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 57788888888887 5666554 3457888888888888 78888888888888888888888 7788777788888888
Q ss_pred cccCcCcCCCC
Q 041146 157 TSANGLIGQIP 167 (182)
Q Consensus 157 L~~N~l~~~~p 167 (182)
..+|... .+|
T Consensus 130 s~~na~~-eid 139 (177)
T KOG4579|consen 130 SPENARA-EID 139 (177)
T ss_pred CCCCccc-cCc
Confidence 8877765 444
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.39 E-value=4.5e-07 Score=51.29 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=18.5
Q ss_pred CCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCc
Q 041146 127 QLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLI 163 (182)
Q Consensus 127 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 163 (182)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 45554555555555555555554
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.37 E-value=1.5e-06 Score=76.91 Aligned_cols=93 Identities=25% Similarity=0.464 Sum_probs=76.6
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+.+.|++++++++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45789999999998 6777664 58999999999999 7887654 58999999999999 7887654 47999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|+++ .+|..+. .+|+.|+++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECc
Confidence 999998 6777654 478888874
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=6.6e-07 Score=50.59 Aligned_cols=40 Identities=33% Similarity=0.561 Sum_probs=34.4
Q ss_pred CCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc
Q 041146 102 TCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP 143 (182)
Q Consensus 102 ~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p 143 (182)
++|++|++++|+++ .+|+.+.++++|++|++++|+++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 47899999999999 78888999999999999999998 554
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.32 E-value=1.1e-08 Score=85.92 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=37.9
Q ss_pred CCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCC
Q 041146 94 IPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSL 173 (182)
Q Consensus 94 ~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 173 (182)
+|+.++++..|+++|++.|+++ .+|..+..|+ |+.+-+++|+++ .+|+.++....|..||.+.|.+. .+|..++.+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l 188 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL 188 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH
Confidence 4444444555555555555544 4444444444 444444444444 44444444444444444444444 334444444
Q ss_pred ccCCe
Q 041146 174 EKLEI 178 (182)
Q Consensus 174 ~~L~~ 178 (182)
.+|+.
T Consensus 189 ~slr~ 193 (722)
T KOG0532|consen 189 TSLRD 193 (722)
T ss_pred HHHHH
Confidence 44433
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=2.9e-07 Score=75.74 Aligned_cols=97 Identities=28% Similarity=0.490 Sum_probs=76.2
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
+++.+++++|++. .+|..+..++.|+.|++++|++. .+|.....++.|+.+++++|++. .+|..+.....|+.+.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 7999999999998 66677889999999999999999 77876668889999999999999 888876666678888888
Q ss_pred cCcCcCCCCccccCCccCCeE
Q 041146 159 ANGLIGQIPDRLSSLEKLEII 179 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L 179 (182)
+|++. ..+..+.++.++..+
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l 237 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGL 237 (394)
T ss_pred CCcce-ecchhhhhccccccc
Confidence 88543 233444444444433
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2.6e-07 Score=64.83 Aligned_cols=99 Identities=27% Similarity=0.383 Sum_probs=69.7
Q ss_pred CcEEEEEecCCCCcccCCc---cccCCCCCCEEEeeCCCCCCCCccccCC-CCCCcEeeccCCcCCCccchhccCCCCCC
Q 041146 78 ERVTALKLESKQLVGSIPP---SVGNLTCLKVINLQENNFHGQIPDEIGR-LQQLQDLNLTYNYLSGSIPSNLSHCRELR 153 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~---~l~~l~~L~~L~l~~n~l~g~~p~~l~~-l~~L~~L~ls~n~l~g~~p~~~~~l~~L~ 153 (182)
...-.++++++.+- .+++ .+....+|+..++++|.+. .+|+.|.. .+..+.+++++|.++ .+|.++..++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34556677777654 3333 3445566777788888888 67776654 347788888888888 7888888888888
Q ss_pred EEEcccCcCcCCCCccccCCccCCeEe
Q 041146 154 VFDTSANGLIGQIPDRLSSLEKLEIIR 180 (182)
Q Consensus 154 ~L~L~~N~l~~~~p~~l~~l~~L~~L~ 180 (182)
.++++.|.+. ..|..+..+.++..|+
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhc
Confidence 8888888887 5566666666666554
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.12 E-value=6e-07 Score=70.69 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=61.1
Q ss_pred ccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCC
Q 041146 98 VGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLE 177 (182)
Q Consensus 98 l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 177 (182)
+...+.|+.+|+++|.++ .+.++..-.|+++.|++++|.+. .+.. +..+++|+.||+++|.++. +-..-.++.+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence 334567899999999999 88888888999999999999998 5544 8889999999999998873 333323444444
Q ss_pred eEec
Q 041146 178 IIRL 181 (182)
Q Consensus 178 ~L~L 181 (182)
.|.|
T Consensus 356 tL~L 359 (490)
T KOG1259|consen 356 TLKL 359 (490)
T ss_pred eeeh
Confidence 4443
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=1.7e-07 Score=80.95 Aligned_cols=98 Identities=24% Similarity=0.408 Sum_probs=70.2
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.+...++++|.+. ....++.-++.|+.|||++|++. .+. .+..+++|++||+++|++. .+|..-..--+|..|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 4667778888877 66777777888899999999888 333 6778888999999999888 777532222237778888
Q ss_pred cCcCcCCCCccccCCccCCeEecC
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|.++.. ..+.++.+|+.||++
T Consensus 241 nN~l~tL--~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLS 262 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchh
Confidence 8877632 235667777777664
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.96 E-value=3.8e-06 Score=75.61 Aligned_cols=83 Identities=27% Similarity=0.450 Sum_probs=74.1
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
+.++.||+++|.--+.+|.+++.+-+|++|++++..++ .+|..+.++..|.+|++..+.....+|.....+++|++|.+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 78999999998877899999999999999999999999 99999999999999999988766566666677999999998
Q ss_pred ccCc
Q 041146 158 SANG 161 (182)
Q Consensus 158 ~~N~ 161 (182)
....
T Consensus 650 ~~s~ 653 (889)
T KOG4658|consen 650 PRSA 653 (889)
T ss_pred eccc
Confidence 6654
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.9e-05 Score=58.82 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=78.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc--hhccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP--SNLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L 155 (182)
.....+|+++|.+. .+ +.|..++.|.+|.+.+|.++..-|.--..+++|+.|.+.+|++. .+. ..+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 34578999999886 22 34778999999999999999444443346778999999999988 554 346788999999
Q ss_pred EcccCcCcCCCC---ccccCCccCCeEecC
Q 041146 156 DTSANGLIGQIP---DRLSSLEKLEIIRLG 182 (182)
Q Consensus 156 ~L~~N~l~~~~p---~~l~~l~~L~~L~Ls 182 (182)
.+-+|..+..-- -.+..+++|+.||.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehh
Confidence 999998874321 246789999999863
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=8.4e-06 Score=67.79 Aligned_cols=97 Identities=28% Similarity=0.400 Sum_probs=65.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.+++.+|++... ...+..+.+|++|++++|.++ .+. .+..++.|+.|++++|.++ .+. .+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch-hcc-CCccchhhhcccC
Confidence 6778888888888733 333567888888888888887 333 3566677888888888887 444 3455778888888
Q ss_pred ccCcCcCCCCccccCCccCCeE
Q 041146 158 SANGLIGQIPDRLSSLEKLEII 179 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L 179 (182)
++|.++..-+.....+.+++.+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEEL 191 (414)
T ss_pred CcchhhhhhhhhhhhccchHHH
Confidence 8888874333002344444443
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=1.3e-05 Score=66.64 Aligned_cols=98 Identities=24% Similarity=0.401 Sum_probs=74.6
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.+..+.+..|.+.. +-..+..+.+|+.+++..|.+. .+...+..+++|++|++++|+|+ .+. .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheec
Confidence 44555677777663 3344778899999999999999 55554778999999999999999 553 35677789999999
Q ss_pred cCcCcCCCCccccCCccCCeEecC
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|.++.. ..+..+++|+.++++
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred cCcchhc--cCCccchhhhcccCC
Confidence 9999843 345557778777764
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=2.5e-05 Score=64.15 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=50.1
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCc--cccCCCCCCcEeeccCCcCCC-ccchh-----ccCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIP--DEIGRLQQLQDLNLTYNYLSG-SIPSN-----LSHC 149 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p--~~l~~l~~L~~L~ls~n~l~g-~~p~~-----~~~l 149 (182)
+.+..|++.+|........+...+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.+.. .+|+. ....
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 55666666666422222333344567777777777765 333 335567777777777776662 12222 2345
Q ss_pred CCCCEEEcccCcCc
Q 041146 150 RELRVFDTSANGLI 163 (182)
Q Consensus 150 ~~L~~L~L~~N~l~ 163 (182)
++|++|++..|++.
T Consensus 301 ~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 301 PKLEYLNISENNIR 314 (505)
T ss_pred ccceeeecccCccc
Confidence 77788888888774
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=1.9e-05 Score=64.79 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=15.5
Q ss_pred CCcEeeccCCcCCCccc--hhccCCCCCCEEEcccCcCc
Q 041146 127 QLQDLNLTYNYLSGSIP--SNLSHCRELRVFDTSANGLI 163 (182)
Q Consensus 127 ~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L~L~~N~l~ 163 (182)
.|+.||+++|++. ..+ ...+.++.|+.|+++.+.+.
T Consensus 247 ~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 247 TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence 3444444444433 222 22344444444444444443
No 48
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=8.3e-06 Score=63.65 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=69.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc--hhccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP--SNLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L 155 (182)
..++.|++=++++.+. . -..+|+.|++|.|+-|.++ .+ ..+..+++|++|+|..|.|. .+. ..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH-H-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 4566667777766632 1 1246888888888888887 33 23678888999999988887 554 356788899999
Q ss_pred EcccCcCcCCCCc-----cccCCccCCeEe
Q 041146 156 DTSANGLIGQIPD-----RLSSLEKLEIIR 180 (182)
Q Consensus 156 ~L~~N~l~~~~p~-----~l~~l~~L~~L~ 180 (182)
.|..|...|.-+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988876554 345666776664
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00026 Score=54.60 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=67.7
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCC--CCCCCCccccCCCCCCcEeeccCCcCCCccch---hccCCCCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQEN--NFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS---NLSHCREL 152 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n--~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~---~~~~l~~L 152 (182)
..+..+++.+.+++. -..+..|++|+.|.++.| .+.+.++.....+++|+++++++|++. . ++ .+..+.+|
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcch
Confidence 345555555555541 234667889999999999 666677666667799999999999987 2 33 34566778
Q ss_pred CEEEcccCcCcCCCC---ccccCCccCCeEe
Q 041146 153 RVFDTSANGLIGQIP---DRLSSLEKLEIIR 180 (182)
Q Consensus 153 ~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ 180 (182)
..|++.+|..+..-- ..|.-+++|++||
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 888888887765211 2355567777765
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=3.3e-05 Score=67.29 Aligned_cols=98 Identities=26% Similarity=0.334 Sum_probs=72.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccc-cCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDE-IGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~-l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
+.++.|++++|+++ ... .+..++.|++||+++|.+. .+|.- ...+. |+.|.+++|.++ .+ .++.++++|+.||
T Consensus 187 ~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccc
Confidence 67899999999998 333 6778999999999999998 66652 23444 999999999887 43 4578899999999
Q ss_pred cccCcCcCCCC-ccccCCccCCeEec
Q 041146 157 TSANGLIGQIP-DRLSSLEKLEIIRL 181 (182)
Q Consensus 157 L~~N~l~~~~p-~~l~~l~~L~~L~L 181 (182)
++.|-+.+.-. ..+..+..|++|+|
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 99998875321 11334445554443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.0013 Score=49.26 Aligned_cols=95 Identities=25% Similarity=0.416 Sum_probs=65.2
Q ss_pred EEEEecCCCCcccCCcccc-CCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccC-CCCCCEEEcc
Q 041146 81 TALKLESKQLVGSIPPSVG-NLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSH-CRELRVFDTS 158 (182)
Q Consensus 81 ~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~-l~~L~~L~L~ 158 (182)
+++++.+.++.. ...++ .+.+...+|+++|.+. .+ ..+..++.|.+|.+.+|+|+ .+.+.+.. +++|..|.+.
T Consensus 22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc--hhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 455666555431 11122 2356778999999987 33 34778999999999999999 66555554 5789999999
Q ss_pred cCcCcC--CCCccccCCccCCeEec
Q 041146 159 ANGLIG--QIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 159 ~N~l~~--~~p~~l~~l~~L~~L~L 181 (182)
+|++.. .+ .-+..+++|+.|.+
T Consensus 97 nNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 97 NNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred Ccchhhhhhc-chhccCCccceeee
Confidence 999863 22 23567777777653
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.01 E-value=0.00016 Score=63.89 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=56.5
Q ss_pred CcEEEEEecCCCCccc-CCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc--hhccCCCCCCE
Q 041146 78 ERVTALKLESKQLVGS-IPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP--SNLSHCRELRV 154 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~ 154 (182)
+.++.|.+.+..+... +..-..++++|..||+++.+++ .+ ..++++++|+.|.+.+=.+. ... ..+.++++|++
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLRV 224 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCCe
Confidence 5566666666555322 1222345666777777776666 22 45666666766666554444 111 24556777777
Q ss_pred EEcccCcCcCCC--C----ccccCCccCCeEecC
Q 041146 155 FDTSANGLIGQI--P----DRLSSLEKLEIIRLG 182 (182)
Q Consensus 155 L~L~~N~l~~~~--p----~~l~~l~~L~~L~Ls 182 (182)
||+|..+..... . +.-..+|+|+.||.|
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 777766554221 1 112346677777654
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.0004 Score=53.59 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=27.4
Q ss_pred CcEEEEEecCC--CCcccCCccccCCCCCCEEEeeCCCCCCCCccc---cCCCCCCcEeeccCCcCC
Q 041146 78 ERVTALKLESK--QLVGSIPPSVGNLTCLKVINLQENNFHGQIPDE---IGRLQQLQDLNLTYNYLS 139 (182)
Q Consensus 78 ~~l~~L~l~~n--~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~---l~~l~~L~~L~ls~n~l~ 139 (182)
++++.|.++.| ++.+.++.....+++|++++++.|++.- +++ +..+.+|..|++.+|..+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 34555555555 4444443333344555555555555541 221 233344445555554443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.82 E-value=0.0012 Score=58.42 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=27.1
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCC-CCccccCCCCCCcEeeccCCc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHG-QIPDEIGRLQQLQDLNLTYNY 137 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g-~~p~~l~~l~~L~~L~ls~n~ 137 (182)
+++..||+++.+++.. ..++++++|+.|.+.+-.+.. ..-..+.+|++|+.||+|...
T Consensus 173 pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 4555555555555422 334455555555444443331 111234455555555555444
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.00036 Score=55.22 Aligned_cols=85 Identities=25% Similarity=0.228 Sum_probs=56.5
Q ss_pred CcEEEEEecCCCCccc--CCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCcc-chhccCCCCCCE
Q 041146 78 ERVTALKLESKQLVGS--IPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSI-PSNLSHCRELRV 154 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~--~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~-p~~~~~l~~L~~ 154 (182)
.+|+++|+..|.++.. +..-+.+|+.|++|+++.|.+...|...-..+.+|+++-+.+..+...- ...+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 5678888888888742 3333567888888888888887544332246667888888777665322 234556667777
Q ss_pred EEcccCcC
Q 041146 155 FDTSANGL 162 (182)
Q Consensus 155 L~L~~N~l 162 (182)
+.++.|++
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 77777643
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.71 E-value=0.00055 Score=54.94 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=23.5
Q ss_pred hccCCCCCCEEEcccCcCcCC----CCccccCCccCCeEecC
Q 041146 145 NLSHCRELRVFDTSANGLIGQ----IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 145 ~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls 182 (182)
.+..++.|++||+.+|-|+.. +...+..+++|+.++++
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 355677777777777777632 23345566666666653
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.62 E-value=0.0057 Score=50.80 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=30.4
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCC-cCCCccch
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYN-YLSGSIPS 144 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n-~l~g~~p~ 144 (182)
.++.|++++|.++ .+| .+ ..+|+.|.++++.--..+|..+ .++|++|++++| .+. .+|.
T Consensus 53 ~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred CCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc
Confidence 4566777776665 344 11 2356666666532222455433 235666666666 333 4443
No 58
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.56 E-value=3.9e-05 Score=58.59 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=75.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.||++.|++. .....|..++.|..+|++.|++. ..|..+++...++.+++..|..+ ..|.+++..+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 78999999999987 55666778889999999999998 88999999999999999999999 89999999999999999
Q ss_pred ccCcCcC
Q 041146 158 SANGLIG 164 (182)
Q Consensus 158 ~~N~l~~ 164 (182)
..|.+..
T Consensus 119 k~~~~~~ 125 (326)
T KOG0473|consen 119 KKTEFFR 125 (326)
T ss_pred ccCcchH
Confidence 9998763
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.53 E-value=0.0011 Score=31.45 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=4.5
Q ss_pred cEeeccCCcCC
Q 041146 129 QDLNLTYNYLS 139 (182)
Q Consensus 129 ~~L~ls~n~l~ 139 (182)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.51 E-value=0.0069 Score=50.33 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=17.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQEN 112 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 112 (182)
.+++.|.++++.--..+|..+. .+|+.|++++|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 4577777766433234444332 45666666665
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.39 E-value=0.0012 Score=31.27 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=17.8
Q ss_pred CCCEEEcccCcCcCCCCccccCC
Q 041146 151 ELRVFDTSANGLIGQIPDRLSSL 173 (182)
Q Consensus 151 ~L~~L~L~~N~l~~~~p~~l~~l 173 (182)
+|++||+++|+++ .+|+.|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4899999999999 788777653
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.30 E-value=0.00046 Score=55.37 Aligned_cols=85 Identities=16% Similarity=0.328 Sum_probs=43.1
Q ss_pred cEEEEEecCCCCcc----cCCccccCCCCCCEEEeeCCCCCCC----CccccCCCCCCcEeeccCCcCCCccchhc----
Q 041146 79 RVTALKLESKQLVG----SIPPSVGNLTCLKVINLQENNFHGQ----IPDEIGRLQQLQDLNLTYNYLSGSIPSNL---- 146 (182)
Q Consensus 79 ~l~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~g~----~p~~l~~l~~L~~L~ls~n~l~g~~p~~~---- 146 (182)
.+..+.+..|++.- .+...+.++++|++||+..|.++-. +-..+..+++|+.++++++.+...-...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 45555555555431 1223355666666666666666521 22334555666666666665553221111
Q ss_pred -cCCCCCCEEEcccCcCc
Q 041146 147 -SHCRELRVFDTSANGLI 163 (182)
Q Consensus 147 -~~l~~L~~L~L~~N~l~ 163 (182)
...++|+++.+.+|.++
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 12455666666666654
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0025 Score=50.63 Aligned_cols=83 Identities=28% Similarity=0.325 Sum_probs=58.0
Q ss_pred CCCCCCEEEeeCCCCCC--CCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCC-CCccccCCccC
Q 041146 100 NLTCLKVINLQENNFHG--QIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQ-IPDRLSSLEKL 176 (182)
Q Consensus 100 ~l~~L~~L~l~~n~l~g--~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L 176 (182)
..+.++.+|+.+|.++. ++-.-+.++|.|++|+++.|.+...|...-....+|+++.|.+..+.-. .-..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35788999999999973 3334467899999999999998854433224567899999988776432 22334566666
Q ss_pred CeEecC
Q 041146 177 EIIRLG 182 (182)
Q Consensus 177 ~~L~Ls 182 (182)
+.|.+|
T Consensus 149 telHmS 154 (418)
T KOG2982|consen 149 TELHMS 154 (418)
T ss_pred hhhhhc
Confidence 666543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.47 E-value=0.078 Score=36.12 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=17.2
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeecc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLT 134 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls 134 (182)
+++.+.+.. .+...-...|..+.+|+.+.+..+ +...-...+..+++++.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444442 233222333444444555444442 331112223344444444443
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.20 E-value=0.014 Score=25.72 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=3.0
Q ss_pred cEeeccCCc
Q 041146 129 QDLNLTYNY 137 (182)
Q Consensus 129 ~~L~ls~n~ 137 (182)
++|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.66 E-value=0.059 Score=42.54 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=26.0
Q ss_pred ccCCCCCCEEEeeCCCCCCCCccc----cCCCCCCcEeeccCCcCC
Q 041146 98 VGNLTCLKVINLQENNFHGQIPDE----IGRLQQLQDLNLTYNYLS 139 (182)
Q Consensus 98 l~~l~~L~~L~l~~n~l~g~~p~~----l~~l~~L~~L~ls~n~l~ 139 (182)
+.++++|+..++|.|.+....|+. ++.-+.|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 456667777777777666555543 344556666666666554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.41 E-value=0.11 Score=35.26 Aligned_cols=94 Identities=15% Similarity=0.308 Sum_probs=49.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~ 156 (182)
..++.+.+.++ +...-...|.++.+++.+.+.. .+...-...+..+++++.+++..+ +. .++ ..+.+. .++.+.
T Consensus 35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE
T ss_pred ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-CceEEE
Confidence 46888888875 6645556688888899999976 444233345677999999999775 55 444 456666 899998
Q ss_pred cccCcCcCCCCccccCCccCC
Q 041146 157 TSANGLIGQIPDRLSSLEKLE 177 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~ 177 (182)
+.. .++..-...|.+.++|+
T Consensus 110 ~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 110 IPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp -TT-B-SS----GGG------
T ss_pred ECC-CccEECCccccccccCC
Confidence 875 44444455677776664
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.37 E-value=0.00041 Score=53.10 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=69.2
Q ss_pred cccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccC
Q 041146 97 SVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKL 176 (182)
Q Consensus 97 ~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 176 (182)
++......+.||++.|++. ..-..+.-++.+..++++.|++. ..|+.++....++.+++..|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4556678899999999987 45556777889999999999999 89999999999999999988887 779999999988
Q ss_pred CeEec
Q 041146 177 EIIRL 181 (182)
Q Consensus 177 ~~L~L 181 (182)
+++++
T Consensus 114 k~~e~ 118 (326)
T KOG0473|consen 114 KKNEQ 118 (326)
T ss_pred chhhh
Confidence 87653
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.68 E-value=0.16 Score=40.17 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=39.3
Q ss_pred CcEEEEEecCCCCcccCCcc----ccCCCCCCEEEeeCCCCCCC----Cc---------cccCCCCCCcEeeccCCcCC
Q 041146 78 ERVTALKLESKQLVGSIPPS----VGNLTCLKVINLQENNFHGQ----IP---------DEIGRLQQLQDLNLTYNYLS 139 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~g~----~p---------~~l~~l~~L~~L~ls~n~l~ 139 (182)
+++..++++.|.+.-..|+. +++-+.|.+|.+++|.+... +- ....+-|.|++....+|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 67788888888777555554 34456788888888876521 11 12234566777777777665
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.26 E-value=0.084 Score=25.67 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=5.9
Q ss_pred CCcEeeccCCcCC
Q 041146 127 QLQDLNLTYNYLS 139 (182)
Q Consensus 127 ~L~~L~ls~n~l~ 139 (182)
+|++|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.26 E-value=0.084 Score=25.67 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=5.9
Q ss_pred CCcEeeccCCcCC
Q 041146 127 QLQDLNLTYNYLS 139 (182)
Q Consensus 127 ~L~~L~ls~n~l~ 139 (182)
+|++|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.013 Score=46.75 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=19.5
Q ss_pred CCcEEEEEecCCC-Ccc-cCCccccCCCCCCEEEeeCCCCC
Q 041146 77 NERVTALKLESKQ-LVG-SIPPSVGNLTCLKVINLQENNFH 115 (182)
Q Consensus 77 ~~~l~~L~l~~n~-l~~-~~p~~l~~l~~L~~L~l~~n~l~ 115 (182)
+..++.++++++. ++. ...--+..++.|..|+++.+.+.
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 3556666666543 221 01112445666666666666554
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=0.0064 Score=47.93 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=60.1
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCcc--ccCCCCCCcEeeccCCcCCCccchh-----ccCCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPD--EIGRLQQLQDLNLTYNYLSGSIPSN-----LSHCR 150 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~--~l~~l~~L~~L~ls~n~l~g~~p~~-----~~~l~ 150 (182)
+.+++|.|+-|+|+..-| +..++.|+.|.|..|.+. .+.+ -+.++++|+.|.+..|.-.|.-+.. +-.++
T Consensus 41 p~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred ccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 789999999999984433 678999999999999998 4443 2578999999999999888776643 34567
Q ss_pred CCCEEE
Q 041146 151 ELRVFD 156 (182)
Q Consensus 151 ~L~~L~ 156 (182)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 777665
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.08 E-value=0.029 Score=44.71 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=55.9
Q ss_pred CCCEEEeeCCCCCCC-CccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccC-cCcCC-CCccccCCccCCeE
Q 041146 103 CLKVINLQENNFHGQ-IPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSAN-GLIGQ-IPDRLSSLEKLEII 179 (182)
Q Consensus 103 ~L~~L~l~~n~l~g~-~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L 179 (182)
.|+++|++...++.. +-.-+..+.+|+.+.+-++++...+-..++.-.+|+.++++.. .|+.. ..-.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 488888888877632 2223567888999999999998888888888889999998754 23211 11235677777777
Q ss_pred ecC
Q 041146 180 RLG 182 (182)
Q Consensus 180 ~Ls 182 (182)
+++
T Consensus 266 Nls 268 (419)
T KOG2120|consen 266 NLS 268 (419)
T ss_pred Cch
Confidence 764
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.97 E-value=0.067 Score=25.53 Aligned_cols=10 Identities=40% Similarity=0.484 Sum_probs=3.0
Q ss_pred CCEEEcccCc
Q 041146 152 LRVFDTSANG 161 (182)
Q Consensus 152 L~~L~L~~N~ 161 (182)
|+.|++++|+
T Consensus 4 L~~L~l~~n~ 13 (24)
T PF13516_consen 4 LETLDLSNNQ 13 (24)
T ss_dssp -SEEE-TSSB
T ss_pred CCEEEccCCc
Confidence 3333333333
No 76
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.81 E-value=0.53 Score=23.16 Aligned_cols=17 Identities=41% Similarity=0.755 Sum_probs=8.7
Q ss_pred CCcEeeccCCcCCCccch
Q 041146 127 QLQDLNLTYNYLSGSIPS 144 (182)
Q Consensus 127 ~L~~L~ls~n~l~g~~p~ 144 (182)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3455555555555 4443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.43 E-value=0.2 Score=37.67 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=55.2
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCC-CCCccccC-CCCCCcEeeccCCc-CCCccchhccCCCCCCE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFH-GQIPDEIG-RLQQLQDLNLTYNY-LSGSIPSNLSHCRELRV 154 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-g~~p~~l~-~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~ 154 (182)
-.|+.+|-++..|...--+.+..++.++.|.+.++.-- ...-+.++ ..++|+.|++++|. |+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 46899999999888665566777888888877776422 11111122 35689999999774 55333345667788888
Q ss_pred EEcccC
Q 041146 155 FDTSAN 160 (182)
Q Consensus 155 L~L~~N 160 (182)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 877543
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.97 E-value=1.1 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=11.7
Q ss_pred CCCCCEEEcccCcCc
Q 041146 149 CRELRVFDTSANGLI 163 (182)
Q Consensus 149 l~~L~~L~L~~N~l~ 163 (182)
+++|+.|+++.|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888888888886
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.53 E-value=1.8 Score=21.45 Aligned_cols=14 Identities=43% Similarity=0.373 Sum_probs=10.8
Q ss_pred CCCCEEEcccCcCc
Q 041146 150 RELRVFDTSANGLI 163 (182)
Q Consensus 150 ~~L~~L~L~~N~l~ 163 (182)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888875
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.13 E-value=1.1 Score=37.32 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCCCCEEEeeCCC-CCCCCccccC-CCCCCcEeeccCCc-CCCccc-hhccCCCCCCEEEcccCcC
Q 041146 101 LTCLKVINLQENN-FHGQIPDEIG-RLQQLQDLNLTYNY-LSGSIP-SNLSHCRELRVFDTSANGL 162 (182)
Q Consensus 101 l~~L~~L~l~~n~-l~g~~p~~l~-~l~~L~~L~ls~n~-l~g~~p-~~~~~l~~L~~L~L~~N~l 162 (182)
+.+|+.++++.+. ++...-..+. .+++|+.|.+.++. ++..-- .-...++.|+.|+++.+..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3455555555544 2211111111 24455555544433 221111 1122345555555554433
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.22 E-value=0.53 Score=35.48 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=50.7
Q ss_pred CCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCcc-chhcc-CCCCCCEEEcccC-cCcCCCCccccCCccCCeE
Q 041146 103 CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSI-PSNLS-HCRELRVFDTSAN-GLIGQIPDRLSSLEKLEII 179 (182)
Q Consensus 103 ~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~-p~~~~-~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L 179 (182)
.++.+|.++..+.++--+.+.+++.++.+.+.++.-.+.- -+.++ -.++|+.|+++.| +||..--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4678888888887666667788888888888877522110 11222 3478999999966 4443322345566666655
Q ss_pred ec
Q 041146 180 RL 181 (182)
Q Consensus 180 ~L 181 (182)
.+
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 43
No 82
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.60 E-value=3.5 Score=27.10 Aligned_cols=16 Identities=38% Similarity=0.245 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 041146 8 SKWFWLHFLEFIHVLW 23 (182)
Q Consensus 8 ~~~~~~~~l~~~~~~~ 23 (182)
||.++++.++++.+|+
T Consensus 3 SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLL 18 (95)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 6666666655544444
No 83
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=56.47 E-value=9.3 Score=21.59 Aligned_cols=40 Identities=15% Similarity=0.422 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHhcc
Q 041146 9 KWFWLHFLEFIHVLWMTPGLKSAIIEVDDKLALIDFKSHI 48 (182)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 48 (182)
-|+|..+|+++..--+..--.-...-.+|+.+|++.++.+
T Consensus 4 awywivli~lv~~gy~~hmkrycrafrqdrdallear~kl 43 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKRYCRAFRQDRDALLEARNKL 43 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4888877765433222111111111246888999888765
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.62 E-value=27 Score=16.54 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=5.7
Q ss_pred CCCcEeeccCC
Q 041146 126 QQLQDLNLTYN 136 (182)
Q Consensus 126 ~~L~~L~ls~n 136 (182)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 85
>PF15206 FAM209: FAM209 family
Probab=34.90 E-value=30 Score=24.42 Aligned_cols=18 Identities=44% Similarity=1.025 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 041146 6 LNSKWFWLHFLEFIHVLW 23 (182)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~ 23 (182)
|-|+|+|+++++.+..++
T Consensus 37 LgsKwlWL~Fvv~lyvil 54 (150)
T PF15206_consen 37 LGSKWLWLLFVVVLYVIL 54 (150)
T ss_pred hhhHHHHHHHHHHHHhee
Confidence 568999998877665554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.36 E-value=23 Score=30.92 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCccc--CCccccCCCCCCEEEeeCC--CCCCCCccccC--CCCCCcEeeccCCcCC
Q 041146 78 ERVTALKLESKQLVGS--IPPSVGNLTCLKVINLQEN--NFHGQIPDEIG--RLQQLQDLNLTYNYLS 139 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~--~p~~l~~l~~L~~L~l~~n--~l~g~~p~~l~--~l~~L~~L~ls~n~l~ 139 (182)
+.|..+++++|++... +..--..-+.|..|+|++| .+.. ..++. +...|++|-+.+|.+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 4566667777765521 1111122355666666666 2221 11111 1223566666666554
No 87
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=32.59 E-value=69 Score=18.46 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 041146 6 LNSKWFWLHFLEFIHVLW 23 (182)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~ 23 (182)
+++.+|.++++.+..++.
T Consensus 2 lk~lkf~lv~imlaqlls 19 (60)
T PF10913_consen 2 LKSLKFLLVLIMLAQLLS 19 (60)
T ss_pred hhHHHHHHHHHHHHHHHc
Confidence 567788777766666554
No 88
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=30.97 E-value=63 Score=17.13 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 041146 7 NSKWFWLHFLEFIHVLW 23 (182)
Q Consensus 7 ~~~~~~~~~l~~~~~~~ 23 (182)
|++-+|.+++++++..+
T Consensus 14 RTSLY~GLllifvl~vL 30 (37)
T PF02419_consen 14 RTSLYWGLLLIFVLAVL 30 (37)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 46677777776655444
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.94 E-value=35 Score=35.51 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.2
Q ss_pred EecCCCCcccCCccccCCCCCCEEEeeCCCCC
Q 041146 84 KLESKQLVGSIPPSVGNLTCLKVINLQENNFH 115 (182)
Q Consensus 84 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 115 (182)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998665667888999999999998775
No 90
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=29.13 E-value=60 Score=20.31 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhcc
Q 041146 11 FWLHFLEFIHVLWMTP 26 (182)
Q Consensus 11 ~~~~~l~~~~~~~~~~ 26 (182)
=|+++|+++-+++..+
T Consensus 6 DWlFLlFifsillQsg 21 (87)
T PF07436_consen 6 DWLFLLFIFSILLQSG 21 (87)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 3666666666666533
No 91
>CHL00038 psbL photosystem II protein L
Probab=29.11 E-value=91 Score=16.58 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 041146 7 NSKWFWLHFLEFIHVLW 23 (182)
Q Consensus 7 ~~~~~~~~~l~~~~~~~ 23 (182)
|.+-+|.+++++.+..+
T Consensus 15 RTSLy~GLLlifvl~vl 31 (38)
T CHL00038 15 RTSLYWGLLLIFVLAVL 31 (38)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46667777766654443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.58 E-value=28 Score=30.41 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=40.4
Q ss_pred CCCCCCEEEeeCCCCCCCCc---cccCCCCCCcEeeccCC--cCCCccchhccC--CCCCCEEEcccCcCcCC
Q 041146 100 NLTCLKVINLQENNFHGQIP---DEIGRLQQLQDLNLTYN--YLSGSIPSNLSH--CRELRVFDTSANGLIGQ 165 (182)
Q Consensus 100 ~l~~L~~L~l~~n~l~g~~p---~~l~~l~~L~~L~ls~n--~l~g~~p~~~~~--l~~L~~L~L~~N~l~~~ 165 (182)
+.+.+..+++++|++. .+. .--...++|+.|+|++| .+. ...++.. ...|+.|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 4566778889999876 222 11234678999999999 333 1222332 24578888999988654
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.41 E-value=39 Score=35.21 Aligned_cols=13 Identities=8% Similarity=0.314 Sum_probs=6.5
Q ss_pred cEEEEEecCCCCc
Q 041146 79 RVTALKLESKQLV 91 (182)
Q Consensus 79 ~l~~L~l~~n~l~ 91 (182)
+++.|+|++|.+.
T Consensus 20 sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 20 NLSEIDLSGNPFE 32 (2740)
T ss_pred CceEEEeeCCccc
Confidence 4455555555444
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=26.63 E-value=1.6 Score=37.27 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=40.5
Q ss_pred CcEEEEEecCCCCcc----cCCccc----cCCCCCCEEEeeCCCCCCC----CccccCCCCC-CcEeeccCCcCCCc---
Q 041146 78 ERVTALKLESKQLVG----SIPPSV----GNLTCLKVINLQENNFHGQ----IPDEIGRLQQ-LQDLNLTYNYLSGS--- 141 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~----~~p~~l----~~l~~L~~L~l~~n~l~g~----~p~~l~~l~~-L~~L~ls~n~l~g~--- 141 (182)
.+++.++++.|.+.. .++..+ ....+++.|.+++|.++.. +-..+...+. +..+++..|.+...
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~ 251 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVE 251 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHH
Confidence 456666666666531 111222 2355666666666665521 0011222333 44466666655521
Q ss_pred -cchhccCC-CCCCEEEcccCcCcC
Q 041146 142 -IPSNLSHC-RELRVFDTSANGLIG 164 (182)
Q Consensus 142 -~p~~~~~l-~~L~~L~L~~N~l~~ 164 (182)
..+.+..+ ..+++++++.|.++.
T Consensus 252 ~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 252 KLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHHHhcccchhhhhhhhhcCCccc
Confidence 11223333 445666666666653
No 95
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=25.85 E-value=1.1e+02 Score=16.34 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 041146 7 NSKWFWLHFLEFIHVLW 23 (182)
Q Consensus 7 ~~~~~~~~~l~~~~~~~ 23 (182)
|.+-+|.+++++.+..+
T Consensus 16 RTSLy~GlLlifvl~vL 32 (39)
T PRK00753 16 RTSLYLGLLLVFVLGIL 32 (39)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46667777766655443
No 96
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.94 E-value=29 Score=23.95 Aligned_cols=6 Identities=17% Similarity=0.877 Sum_probs=2.3
Q ss_pred HHHHHH
Q 041146 10 WFWLHF 15 (182)
Q Consensus 10 ~~~~~~ 15 (182)
|+++.+
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 443333
Done!