Query 041146
Match_columns 182
No_of_seqs 264 out of 2851
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 5.5E-26 1.9E-30 180.0 12.7 149 32-182 2-157 (313)
2 4eco_A Uncharacterized protein 99.9 1E-23 3.5E-28 181.3 11.9 151 30-182 24-281 (636)
3 3rgz_A Protein brassinosteroid 99.9 5.2E-23 1.8E-27 180.2 10.9 149 29-181 5-185 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 3.1E-22 1.1E-26 177.2 10.4 146 30-182 263-523 (876)
5 4fcg_A Uncharacterized protein 99.8 4.2E-21 1.4E-25 152.9 5.3 149 30-181 21-190 (328)
6 3e6j_A Variable lymphocyte rec 99.8 7.4E-18 2.5E-22 127.7 12.3 125 57-182 10-143 (229)
7 1w8a_A SLIT protein; signaling 99.7 8.4E-18 2.9E-22 124.1 10.5 118 65-182 7-134 (192)
8 2o6r_A Variable lymphocyte rec 99.7 5.6E-17 1.9E-21 117.8 12.0 118 65-182 6-132 (177)
9 2o6s_A Variable lymphocyte rec 99.7 6.9E-17 2.4E-21 120.2 12.0 116 66-181 7-131 (208)
10 2v9t_B SLIT homolog 2 protein 99.7 7.3E-17 2.5E-21 121.5 11.7 105 78-182 56-160 (220)
11 2wfh_A SLIT homolog 2 protein 99.7 1.6E-16 5.3E-21 117.5 11.8 104 78-182 31-134 (193)
12 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-16 7.9E-21 118.7 11.4 105 78-182 57-161 (220)
13 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-16 7.7E-21 118.8 10.9 118 65-182 10-137 (220)
14 4g8a_A TOLL-like receptor 4; l 99.7 4.7E-16 1.6E-20 132.0 11.3 105 78-182 52-156 (635)
15 2o6q_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 119.0 11.2 103 79-181 38-140 (270)
16 3rgz_A Protein brassinosteroid 99.7 2.7E-16 9.3E-21 137.7 9.4 83 100-182 630-712 (768)
17 2v9t_B SLIT homolog 2 protein 99.7 1E-15 3.5E-20 115.2 11.2 117 65-182 10-136 (220)
18 1ogq_A PGIP-2, polygalacturona 99.6 1.7E-16 5.8E-21 125.4 6.4 105 78-182 76-182 (313)
19 3m19_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 114.9 12.3 105 78-182 59-163 (251)
20 2z81_A CD282 antigen, TOLL-lik 99.6 6.6E-16 2.3E-20 129.7 9.7 104 78-181 26-130 (549)
21 3e6j_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 112.7 11.0 104 78-182 64-167 (229)
22 3m19_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 113.3 11.2 105 78-182 83-187 (251)
23 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 107.7 7.2 103 78-182 42-148 (149)
24 2z80_A TOLL-like receptor 2, v 99.6 2.4E-15 8.4E-20 120.2 9.8 102 79-181 53-156 (353)
25 3g39_A Variable lymphocyte rec 99.6 5.7E-15 1.9E-19 106.9 10.8 88 78-165 30-117 (170)
26 4fcg_A Uncharacterized protein 99.6 3.2E-15 1.1E-19 118.9 10.1 102 79-181 207-308 (328)
27 2o6s_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 109.1 11.1 105 78-182 52-156 (208)
28 3vq2_A TLR4, TOLL-like recepto 99.6 6.8E-15 2.3E-19 125.0 11.5 105 78-182 56-161 (606)
29 2xot_A Amphoterin-induced prot 99.6 5.5E-15 1.9E-19 118.8 10.3 105 78-182 64-171 (361)
30 3rfs_A Internalin B, repeat mo 99.6 1.3E-14 4.4E-19 112.2 12.0 104 78-181 109-212 (272)
31 3v47_A TOLL-like receptor 5B a 99.6 3.1E-15 1.1E-19 123.0 8.8 103 79-181 55-161 (455)
32 2ell_A Acidic leucine-rich nuc 99.6 4E-15 1.4E-19 107.0 8.2 102 78-182 49-155 (168)
33 2r9u_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 105.6 10.9 96 82-181 16-112 (174)
34 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.5E-20 107.0 5.7 103 78-182 17-121 (149)
35 3rfs_A Internalin B, repeat mo 99.6 1.5E-14 5.1E-19 111.9 11.4 105 78-182 85-189 (272)
36 2ell_A Acidic leucine-rich nuc 99.6 7.2E-15 2.5E-19 105.6 7.5 103 78-182 24-128 (168)
37 3g39_A Variable lymphocyte rec 99.6 2.1E-14 7.3E-19 103.8 9.8 99 81-182 12-110 (170)
38 1ozn_A Reticulon 4 receptor; N 99.6 2.9E-14 9.8E-19 110.7 11.2 105 78-182 56-161 (285)
39 3t6q_A CD180 antigen; protein- 99.6 1.5E-14 5.2E-19 122.9 10.3 103 79-181 34-136 (606)
40 2z62_A TOLL-like receptor 4, v 99.6 3.4E-14 1.1E-18 109.8 11.3 105 78-182 52-157 (276)
41 3oja_B Anopheles plasmodium-re 99.5 2.5E-14 8.5E-19 122.0 11.4 104 78-182 75-179 (597)
42 3v47_A TOLL-like receptor 5B a 99.5 2E-14 6.8E-19 118.1 10.4 105 78-182 299-403 (455)
43 2ft3_A Biglycan; proteoglycan, 99.5 3.4E-14 1.2E-18 112.6 11.4 115 65-182 32-155 (332)
44 1p9a_G Platelet glycoprotein I 99.5 6.5E-14 2.2E-18 109.5 12.8 103 78-181 77-179 (290)
45 3zyi_A Leucine-rich repeat-con 99.5 2.5E-14 8.7E-19 117.9 10.9 105 78-182 75-179 (452)
46 2id5_A Lingo-1, leucine rich r 99.5 2.9E-14 1E-18 118.0 10.7 104 78-181 56-159 (477)
47 1ozn_A Reticulon 4 receptor; N 99.5 4.9E-14 1.7E-18 109.4 11.2 105 78-182 80-185 (285)
48 3vq2_A TLR4, TOLL-like recepto 99.5 3.6E-14 1.2E-18 120.6 11.1 105 78-182 32-136 (606)
49 3j0a_A TOLL-like receptor 5; m 99.5 2.2E-14 7.6E-19 126.7 9.6 104 78-181 48-155 (844)
50 1xku_A Decorin; proteoglycan, 99.5 4.7E-14 1.6E-18 111.6 10.4 114 65-181 30-152 (330)
51 4ezg_A Putative uncharacterize 99.5 4.7E-14 1.6E-18 104.1 9.6 101 78-182 88-189 (197)
52 1w8a_A SLIT protein; signaling 99.5 4.8E-14 1.6E-18 103.8 9.5 99 81-182 11-110 (192)
53 2o6q_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 107.4 11.3 102 80-181 111-212 (270)
54 4g8a_A TOLL-like receptor 4; l 99.5 4.2E-14 1.5E-18 119.9 10.5 105 78-182 76-181 (635)
55 2z62_A TOLL-like receptor 4, v 99.5 5.1E-14 1.7E-18 108.8 10.1 100 78-177 76-176 (276)
56 1dce_A Protein (RAB geranylger 99.5 3.4E-14 1.2E-18 120.8 9.5 101 78-181 463-567 (567)
57 4eco_A Uncharacterized protein 99.5 1.3E-14 4.6E-19 124.6 7.0 117 65-182 192-338 (636)
58 2xot_A Amphoterin-induced prot 99.5 5E-14 1.7E-18 113.2 9.9 117 66-182 18-144 (361)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.4E-14 1.5E-18 119.4 10.0 102 78-182 52-154 (562)
60 2wfh_A SLIT homolog 2 protein 99.5 1.4E-13 4.8E-18 101.6 11.1 98 81-182 13-110 (193)
61 2z7x_B TOLL-like receptor 1, v 99.5 2E-14 6.9E-19 120.1 7.3 101 78-181 21-122 (520)
62 2z66_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 109.6 9.9 105 78-182 150-256 (306)
63 3zyj_A Leucine-rich repeat-con 99.5 9.6E-14 3.3E-18 114.1 11.2 104 78-181 64-167 (440)
64 2z66_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 110.5 8.8 105 78-182 126-231 (306)
65 3o6n_A APL1; leucine-rich repe 99.5 1.2E-13 4.1E-18 111.7 11.0 104 78-182 69-173 (390)
66 1ziw_A TOLL-like receptor 3; i 99.5 7.1E-14 2.4E-18 120.3 9.8 105 78-182 49-153 (680)
67 4b8c_D Glucose-repressible alc 99.5 3.6E-14 1.2E-18 123.8 7.7 101 78-182 224-324 (727)
68 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.6E-18 102.2 8.7 102 78-182 66-167 (197)
69 1wwl_A Monocyte differentiatio 99.5 2.5E-14 8.7E-19 112.7 5.4 103 78-181 95-208 (312)
70 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 102.8 5.6 101 78-182 42-148 (176)
71 4b8c_D Glucose-repressible alc 99.5 2.8E-14 9.6E-19 124.5 5.8 147 33-182 129-301 (727)
72 2id5_A Lingo-1, leucine rich r 99.5 1.4E-13 4.6E-18 114.0 9.5 104 78-182 32-136 (477)
73 2ifg_A High affinity nerve gro 99.5 2.6E-13 8.8E-18 108.1 10.4 95 84-181 14-110 (347)
74 1p9a_G Platelet glycoprotein I 99.5 4.2E-13 1.4E-17 104.9 11.2 103 78-182 100-203 (290)
75 2z63_A TOLL-like receptor 4, v 99.5 1.3E-13 4.5E-18 116.0 8.8 105 78-182 421-526 (570)
76 2xwt_C Thyrotropin receptor; s 99.5 2.1E-13 7.2E-18 103.3 9.0 85 79-163 32-118 (239)
77 3o6n_A APL1; leucine-rich repe 99.5 1.1E-13 3.8E-18 111.9 7.6 105 78-182 45-149 (390)
78 4ecn_A Leucine-rich repeat pro 99.5 5E-14 1.7E-18 124.9 6.0 116 66-182 435-581 (876)
79 1dce_A Protein (RAB geranylger 99.5 1.8E-13 6.1E-18 116.3 9.2 99 79-182 442-541 (567)
80 2z63_A TOLL-like receptor 4, v 99.5 3.2E-13 1.1E-17 113.6 10.6 105 78-182 52-157 (570)
81 2r9u_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 97.2 9.9 87 78-165 33-120 (174)
82 2z81_A CD282 antigen, TOLL-lik 99.4 2.3E-13 7.8E-18 114.3 9.3 104 78-181 50-155 (549)
83 3t6q_A CD180 antigen; protein- 99.4 4.6E-13 1.6E-17 113.8 11.2 118 65-182 42-161 (606)
84 1ziw_A TOLL-like receptor 3; i 99.4 2.6E-13 9E-18 116.8 9.4 104 78-181 73-178 (680)
85 3oja_A Leucine-rich immune mol 99.4 1.7E-13 5.8E-18 114.4 7.9 114 66-181 109-244 (487)
86 2o6r_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 94.4 11.5 99 81-182 10-108 (177)
87 2z80_A TOLL-like receptor 2, v 99.4 3.4E-13 1.2E-17 107.7 8.2 103 78-181 76-181 (353)
88 1a9n_A U2A', U2A'; complex (nu 99.4 4.5E-13 1.5E-17 97.1 7.8 99 78-182 19-121 (176)
89 3zyi_A Leucine-rich repeat-con 99.4 8.1E-13 2.8E-17 108.9 10.1 102 79-182 197-298 (452)
90 3zyj_A Leucine-rich repeat-con 99.4 8.4E-13 2.9E-17 108.5 9.9 84 98-181 203-286 (440)
91 2z7x_B TOLL-like receptor 1, v 99.4 6.5E-13 2.2E-17 111.0 9.3 104 78-182 324-452 (520)
92 2xwt_C Thyrotropin receptor; s 99.4 5.2E-13 1.8E-17 101.1 7.5 103 78-182 55-164 (239)
93 1xku_A Decorin; proteoglycan, 99.4 1.4E-12 4.7E-17 103.1 10.0 92 78-170 192-283 (330)
94 1wwl_A Monocyte differentiatio 99.4 4.9E-13 1.7E-17 105.3 7.1 105 78-182 149-261 (312)
95 4glp_A Monocyte differentiatio 99.4 4.9E-13 1.7E-17 105.1 5.8 104 78-182 145-259 (310)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.8E-12 6.1E-17 109.5 9.3 104 78-182 353-481 (562)
97 4glp_A Monocyte differentiatio 99.4 7.2E-13 2.5E-17 104.1 6.2 105 78-182 91-205 (310)
98 3o53_A Protein LRIM1, AGAP0063 99.4 1.7E-12 5.7E-17 102.4 8.2 101 78-182 144-245 (317)
99 2ifg_A High affinity nerve gro 99.4 2.3E-12 8E-17 102.5 9.1 97 66-164 8-117 (347)
100 3oja_A Leucine-rich immune mol 99.4 1.9E-12 6.4E-17 108.1 8.8 99 78-180 169-268 (487)
101 2ft3_A Biglycan; proteoglycan, 99.4 1.3E-12 4.5E-17 103.5 7.4 93 78-171 193-285 (332)
102 3o53_A Protein LRIM1, AGAP0063 99.4 2.3E-12 8E-17 101.6 8.8 102 78-182 120-222 (317)
103 3j0a_A TOLL-like receptor 5; m 99.4 2.7E-12 9.1E-17 113.5 10.0 105 78-182 266-370 (844)
104 3oja_B Anopheles plasmodium-re 99.3 2.2E-12 7.6E-17 109.9 7.8 130 53-182 6-155 (597)
105 3cvr_A Invasion plasmid antige 99.3 2.1E-12 7E-17 109.9 7.1 107 58-181 35-147 (571)
106 4fmz_A Internalin; leucine ric 99.3 7.7E-12 2.6E-16 99.3 9.1 99 78-182 243-341 (347)
107 1h6t_A Internalin B; cell adhe 99.3 1.1E-11 3.8E-16 96.8 9.8 96 78-181 90-185 (291)
108 1h6u_A Internalin H; cell adhe 99.3 1.2E-11 3.9E-16 97.4 9.9 96 78-181 85-180 (308)
109 1xeu_A Internalin C; cellular 99.3 1.5E-11 5E-16 94.8 10.0 95 78-181 63-157 (263)
110 1h6t_A Internalin B; cell adhe 99.3 1.6E-11 5.6E-16 95.8 10.2 96 78-181 68-163 (291)
111 1h6u_A Internalin H; cell adhe 99.3 1.3E-11 4.6E-16 97.0 9.6 96 78-181 107-202 (308)
112 1xeu_A Internalin C; cellular 99.3 1.7E-11 5.8E-16 94.4 10.0 96 78-182 41-136 (263)
113 4ay9_X Follicle-stimulating ho 99.3 1.1E-11 3.7E-16 99.1 8.7 116 66-181 9-135 (350)
114 1m9s_A Internalin B; cell inva 99.2 4.4E-11 1.5E-15 102.4 11.1 95 79-181 110-204 (605)
115 1ds9_A Outer arm dynein; leuci 99.2 9.2E-14 3.1E-18 102.6 -5.4 100 78-182 48-148 (198)
116 4fmz_A Internalin; leucine ric 99.2 3E-11 1E-15 95.8 8.8 99 78-182 221-319 (347)
117 3bz5_A Internalin-J, INLJ; leu 99.2 5E-11 1.7E-15 98.7 10.4 93 78-182 64-156 (457)
118 1m9s_A Internalin B; cell inva 99.2 4.9E-11 1.7E-15 102.1 10.1 97 78-182 87-183 (605)
119 1o6v_A Internalin A; bacterial 99.2 4.9E-11 1.7E-15 98.6 9.6 96 78-181 287-382 (466)
120 2ast_B S-phase kinase-associat 99.2 1.4E-12 4.6E-17 103.1 -0.9 104 78-181 93-202 (336)
121 1ds9_A Outer arm dynein; leuci 99.2 9.9E-14 3.4E-18 102.4 -7.3 99 79-182 19-123 (198)
122 1o6v_A Internalin A; bacterial 99.2 1.1E-10 3.9E-15 96.4 10.1 96 79-182 266-361 (466)
123 2ast_B S-phase kinase-associat 99.2 4.3E-12 1.5E-16 100.2 1.4 104 78-182 70-176 (336)
124 3cvr_A Invasion plasmid antige 99.1 1.2E-10 4.3E-15 98.9 9.0 71 103-182 161-238 (571)
125 3bz5_A Internalin-J, INLJ; leu 99.1 3.7E-10 1.3E-14 93.5 10.3 94 78-182 85-178 (457)
126 2ca6_A RAN GTPase-activating p 99.1 9.5E-12 3.2E-16 100.4 0.6 105 78-182 187-311 (386)
127 1jl5_A Outer protein YOPM; leu 99.1 6.9E-10 2.4E-14 91.8 10.6 78 78-163 131-208 (454)
128 3goz_A Leucine-rich repeat-con 99.1 2E-11 6.8E-16 97.9 0.9 104 79-182 52-175 (362)
129 2ca6_A RAN GTPase-activating p 99.0 2.3E-11 8E-16 98.1 0.6 105 78-182 159-282 (386)
130 4ay9_X Follicle-stimulating ho 99.0 6.7E-10 2.3E-14 88.6 8.8 98 81-182 12-112 (350)
131 1jl5_A Outer protein YOPM; leu 99.0 6.4E-10 2.2E-14 92.0 8.7 73 102-182 317-404 (454)
132 3g06_A SSPH2 (leucine-rich rep 99.0 2.3E-10 7.8E-15 98.2 5.9 88 79-182 62-149 (622)
133 3g06_A SSPH2 (leucine-rich rep 99.0 2.2E-09 7.5E-14 92.2 11.2 72 102-182 221-292 (622)
134 3goz_A Leucine-rich repeat-con 99.0 9.5E-11 3.3E-15 93.9 2.1 105 78-182 22-146 (362)
135 1z7x_W Ribonuclease inhibitor; 98.9 8.8E-11 3E-15 96.4 -2.8 79 103-181 314-405 (461)
136 1z7x_W Ribonuclease inhibitor; 98.8 3.2E-10 1.1E-14 93.0 -0.8 105 78-182 28-150 (461)
137 3rw6_A Nuclear RNA export fact 98.8 3.9E-09 1.3E-13 81.6 4.3 80 99-180 167-257 (267)
138 3sb4_A Hypothetical leucine ri 98.7 2.6E-08 8.8E-13 78.7 7.9 101 78-181 226-328 (329)
139 3un9_A NLR family member X1; l 98.7 3.5E-09 1.2E-13 85.5 0.5 104 79-182 127-247 (372)
140 3un9_A NLR family member X1; l 98.6 5.7E-09 1.9E-13 84.3 -0.7 105 78-182 101-219 (372)
141 3rw6_A Nuclear RNA export fact 98.5 7.5E-08 2.6E-12 74.3 3.8 77 78-156 170-257 (267)
142 1io0_A Tropomodulin; LRR prote 98.4 2.7E-08 9.2E-13 72.6 0.1 105 78-182 36-159 (185)
143 3ogk_B Coronatine-insensitive 98.4 5.1E-08 1.7E-12 82.3 0.7 15 167-181 286-300 (592)
144 3sb4_A Hypothetical leucine ri 98.2 3.8E-06 1.3E-10 66.1 8.0 50 126-177 226-276 (329)
145 3ogk_B Coronatine-insensitive 98.2 6.6E-07 2.3E-11 75.4 3.8 102 78-181 192-325 (592)
146 2p1m_B Transport inhibitor res 98.2 2E-07 6.9E-12 78.5 -0.0 104 78-181 105-218 (594)
147 2p1m_B Transport inhibitor res 98.2 9.7E-08 3.3E-12 80.5 -2.2 83 98-181 428-513 (594)
148 3e4g_A ATP synthase subunit S, 98.1 2.5E-06 8.5E-11 61.7 3.5 84 78-161 61-150 (176)
149 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 61.3 2.4 81 102-182 61-147 (176)
150 1io0_A Tropomodulin; LRR prote 97.9 1.6E-06 5.5E-11 63.0 0.2 86 78-163 65-164 (185)
151 2ra8_A Uncharacterized protein 97.9 2E-06 6.9E-11 69.1 0.1 57 125-181 251-314 (362)
152 4fdw_A Leucine rich hypothetic 97.6 0.00023 8E-09 57.8 8.6 82 95-180 264-351 (401)
153 4fdw_A Leucine rich hypothetic 97.5 0.00046 1.6E-08 56.0 8.7 100 78-181 271-377 (401)
154 2ra8_A Uncharacterized protein 97.5 6.3E-05 2.2E-09 60.4 3.4 102 78-182 172-287 (362)
155 3rfe_A Platelet glycoprotein I 97.2 0.00068 2.3E-08 46.3 6.0 56 82-139 12-68 (130)
156 3rfe_A Platelet glycoprotein I 97.1 0.0012 4.1E-08 45.1 6.4 56 105-163 11-68 (130)
157 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00039 1.3E-08 51.0 0.8 104 78-181 41-164 (197)
158 4gt6_A Cell surface protein; l 96.5 0.014 4.9E-07 46.7 9.3 81 97-181 283-364 (394)
159 4h09_A Hypothetical leucine ri 96.5 0.0096 3.3E-07 47.3 8.2 82 96-180 257-339 (379)
160 4fs7_A Uncharacterized protein 96.2 0.011 3.8E-07 47.3 7.1 59 97-158 315-374 (394)
161 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0024 8.4E-08 46.8 2.1 85 98-182 37-134 (197)
162 4fs7_A Uncharacterized protein 95.9 0.023 7.8E-07 45.5 7.3 81 97-181 292-373 (394)
163 4gt6_A Cell surface protein; l 95.8 0.025 8.4E-07 45.3 7.3 96 79-181 289-385 (394)
164 4h09_A Hypothetical leucine ri 95.5 0.076 2.6E-06 42.0 8.9 84 95-181 233-317 (379)
165 2lz0_A Uncharacterized protein 54.1 29 0.001 21.8 5.0 46 89-135 7-52 (100)
166 2lz0_A Uncharacterized protein 33.2 89 0.003 19.4 6.4 47 113-160 7-53 (100)
167 3arc_L Photosystem II reaction 30.1 59 0.002 16.4 2.8 17 7-23 14-30 (37)
168 3ox7_P MH027; urokinase-type p 20.8 32 0.0011 15.0 0.6 9 64-72 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.5e-26 Score=179.98 Aligned_cols=149 Identities=37% Similarity=0.589 Sum_probs=134.9
Q ss_pred ccchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCcc--cceeeeCCCC--CcEEEEEecCCCCcc--cCCccccCCCCCC
Q 041146 32 IIEVDDKLALIDFKSHITQDPLQIMSSWNDSIHFCN--WVGVTCSLFN--ERVTALKLESKQLVG--SIPPSVGNLTCLK 105 (182)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~gv~c~~~~--~~l~~L~l~~n~l~~--~~p~~l~~l~~L~ 105 (182)
.|.++|+.+|+++|+++. +|. .+.+|..+.++|. |.||.|+... ++|+.|++++|++.+ .+|..+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 478899999999999985 554 6789988888998 9999997543 789999999999998 8999999999999
Q ss_pred EEEeeC-CCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 106 VINLQE-NNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 106 ~L~l~~-n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|++++ |.+.+.+|..+.++++|++|++++|++++.+|..+.++++|++|++++|.+++.+|..+.++++|++|+++
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 999995 99999999999999999999999999998999999999999999999999999999999999999999874
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1e-23 Score=181.32 Aligned_cols=151 Identities=21% Similarity=0.343 Sum_probs=134.1
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCC-------CCCCCCCCCccc---ceeeeCCCCCcEEEEEecCCCCcccCCcccc
Q 041146 30 SAIIEVDDKLALIDFKSHITQDPLQIM-------SSWNDSIHFCNW---VGVTCSLFNERVTALKLESKQLVGSIPPSVG 99 (182)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~~---~gv~c~~~~~~l~~L~l~~n~l~~~~p~~l~ 99 (182)
..+...+|+.||.+++.++.++.+... .+|+.+.++|.| .||+|+.. ++|+.|+++++++.|.+|++++
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHh
Confidence 334446799999999999876555432 379988899999 99999865 8999999999999999999999
Q ss_pred CCCCCCEEEeeCCC------------------------------------------------------------------
Q 041146 100 NLTCLKVINLQENN------------------------------------------------------------------ 113 (182)
Q Consensus 100 ~l~~L~~L~l~~n~------------------------------------------------------------------ 113 (182)
++++|++|++++|.
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 99999999999884
Q ss_pred ------------CCCCCccccCCCCCCcEeeccCCcCCCc-----------------cchhcc--CCCCCCEEEcccCcC
Q 041146 114 ------------FHGQIPDEIGRLQQLQDLNLTYNYLSGS-----------------IPSNLS--HCRELRVFDTSANGL 162 (182)
Q Consensus 114 ------------l~g~~p~~l~~l~~L~~L~ls~n~l~g~-----------------~p~~~~--~l~~L~~L~L~~N~l 162 (182)
++| +|+.++++++|++|++++|+++|. +|+.++ ++++|++|++++|++
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 344 788899999999999999999985 999999 999999999999999
Q ss_pred cCCCCccccCCccCCeEecC
Q 041146 163 IGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 163 ~~~~p~~l~~l~~L~~L~Ls 182 (182)
.+.+|..++++++|++|+++
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECT
T ss_pred CccChHHHhcCCCCCEEECc
Confidence 99999999999999999985
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=5.2e-23 Score=180.18 Aligned_cols=149 Identities=23% Similarity=0.352 Sum_probs=103.3
Q ss_pred cccccchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccceeeeCCCCCcEEEEEecCCCCccc---CCc---------
Q 041146 29 KSAIIEVDDKLALIDFKSHITQDPLQIMSSWNDSIHFCNWVGVTCSLFNERVTALKLESKQLVGS---IPP--------- 96 (182)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~l~~L~l~~n~l~~~---~p~--------- 96 (182)
+++...++|+.||++||+++. ||. .+.+|..+.++|.|.||+|+ .++|+.|+++++++.|. +|+
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred ccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 344456789999999999997 666 78999988899999999998 38999999999999887 554
Q ss_pred --------------cccCCCCCCEEEeeCCCCCCCCcc--ccCCCCCCcEeeccCCcCCCccchhc-cCCCCCCEEEccc
Q 041146 97 --------------SVGNLTCLKVINLQENNFHGQIPD--EIGRLQQLQDLNLTYNYLSGSIPSNL-SHCRELRVFDTSA 159 (182)
Q Consensus 97 --------------~l~~l~~L~~L~l~~n~l~g~~p~--~l~~l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~L~~ 159 (182)
.++++++|++|++++|.++|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 455555666666666666655555 55566666666666666655555443 5556666666666
Q ss_pred CcCcCCCCcc---ccCCccCCeEec
Q 041146 160 NGLIGQIPDR---LSSLEKLEIIRL 181 (182)
Q Consensus 160 N~l~~~~p~~---l~~l~~L~~L~L 181 (182)
|++++..|.. +.++++|++|++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~L 185 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAI 185 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEEC
T ss_pred CccCCcCChhhhhhccCCCCCEEEC
Confidence 6666555544 556666666655
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=3.1e-22 Score=177.15 Aligned_cols=146 Identities=25% Similarity=0.339 Sum_probs=128.2
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCCCCCCCC-----CC--ccc------------ceeeeCCCCCcEEEEEecCCCC
Q 041146 30 SAIIEVDDKLALIDFKSHITQDPLQIMSSWNDSI-----HF--CNW------------VGVTCSLFNERVTALKLESKQL 90 (182)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~gv~c~~~~~~l~~L~l~~n~l 90 (182)
.++....|+.||+++|+++. +| +|+.+. ++ |.| .||.|+. .++|+.|+++++++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred ccccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 34455689999999999985 33 676543 55 999 9999986 38999999999999
Q ss_pred cccCCccccCCCCCCEEEe-eCCCCCCC----------------------------------------------------
Q 041146 91 VGSIPPSVGNLTCLKVINL-QENNFHGQ---------------------------------------------------- 117 (182)
Q Consensus 91 ~~~~p~~l~~l~~L~~L~l-~~n~l~g~---------------------------------------------------- 117 (182)
.|.+|++++++++|+.|++ ++|.+.|.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 77755443
Q ss_pred ------------------------CccccCCCCCCcEeeccCCcCCC-----------------ccchhcc--CCCCCCE
Q 041146 118 ------------------------IPDEIGRLQQLQDLNLTYNYLSG-----------------SIPSNLS--HCRELRV 154 (182)
Q Consensus 118 ------------------------~p~~l~~l~~L~~L~ls~n~l~g-----------------~~p~~~~--~l~~L~~ 154 (182)
+|+.+.++++|++|++++|+++| .+|+.++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 78889999999999999999998 3999988 9999999
Q ss_pred EEcccCcCcCCCCccccCCccCCeEecC
Q 041146 155 FDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 155 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|++++|++.+.+|..++++++|+.|+++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECc
Confidence 9999999999999999999999999985
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=4.2e-21 Score=152.92 Aligned_cols=149 Identities=21% Similarity=0.336 Sum_probs=119.2
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCCCC----CCCCCCcccceeeeCC--------CCCcEEEEEecCCCCcccCCcc
Q 041146 30 SAIIEVDDKLALIDFKSHITQDPLQIMSSW----NDSIHFCNWVGVTCSL--------FNERVTALKLESKQLVGSIPPS 97 (182)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~gv~c~~--------~~~~l~~L~l~~n~l~~~~p~~ 97 (182)
.......++.+|++||..+..++......| ....++|.|.|+.|.. ...+++.|++++|+++ .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 333456789999999998866776666788 4456889999999942 1267889999999988 77888
Q ss_pred ccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccC-----
Q 041146 98 VGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSS----- 172 (182)
Q Consensus 98 l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~----- 172 (182)
+.++++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..++++++|++|++++|++.+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 888888999999999888 88888888888888888888888 88888888888888888888887777776654
Q ss_pred ----CccCCeEec
Q 041146 173 ----LEKLEIIRL 181 (182)
Q Consensus 173 ----l~~L~~L~L 181 (182)
+++|++|++
T Consensus 178 ~~~~l~~L~~L~L 190 (328)
T 4fcg_A 178 EHQGLVNLQSLRL 190 (328)
T ss_dssp CEEESTTCCEEEE
T ss_pred hhccCCCCCEEEC
Confidence 777777765
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=7.4e-18 Score=127.66 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=94.0
Q ss_pred CCCCCCCCCcccceeeeCCCC---------CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCC
Q 041146 57 SSWNDSIHFCNWVGVTCSLFN---------ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQ 127 (182)
Q Consensus 57 ~~w~~~~~~c~~~gv~c~~~~---------~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~ 127 (182)
..|......|.|.++.|.... .+++.|++++|++++..|..+..+++|++|++++|.++...+..+..+++
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence 456666788999999997531 56889999999998877888888888888888888887444445677888
Q ss_pred CcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 128 LQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 128 L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 888888888888444445677777777777777777 566667777777777663
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=8.4e-18 Score=124.11 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=103.5
Q ss_pred CcccceeeeCCC---------CCcEEEEEecCCCCcccCCc-cccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeecc
Q 041146 65 FCNWVGVTCSLF---------NERVTALKLESKQLVGSIPP-SVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLT 134 (182)
Q Consensus 65 ~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls 134 (182)
.|.|..+.|... ..+++.|++++|++++..+. .+..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 366777777532 14789999999999866654 48899999999999999998889999999999999999
Q ss_pred CCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 135 YNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 135 ~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|++++..|..+.++++|++|++++|++++..|..+..+++|++|+++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 999997777779999999999999999999999999999999999875
No 8
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=5.6e-17 Score=117.84 Aligned_cols=118 Identities=22% Similarity=0.230 Sum_probs=100.5
Q ss_pred CcccceeeeCCCC---------CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccC
Q 041146 65 FCNWVGVTCSLFN---------ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135 (182)
Q Consensus 65 ~c~~~gv~c~~~~---------~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~ 135 (182)
.|.|.++.|.... .+++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4788888886431 5799999999999976666789999999999999999965555678999999999999
Q ss_pred CcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 136 NYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 136 n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 99995555567899999999999999997666667889999999875
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=6.9e-17 Score=120.15 Aligned_cols=116 Identities=23% Similarity=0.264 Sum_probs=65.1
Q ss_pred cccceeeeCCCC---------CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCC
Q 041146 66 CNWVGVTCSLFN---------ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYN 136 (182)
Q Consensus 66 c~~~gv~c~~~~---------~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n 136 (182)
|.|.++.|.... .+++.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 566666664321 34666666666666444444556666666666666666333333455666666666666
Q ss_pred cCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEec
Q 041146 137 YLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 137 ~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++++..+..+.++++|++|++++|++++..+..+.++++|+.|++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 666332333455566666666666665444444555555555554
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=7.3e-17 Score=121.49 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=66.2
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..|..|.++++|++|++++|.++...+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 45666666666666555666666666666666666666332233456666666666666666555566666666777777
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeC
Confidence 7776665555556666666666653
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=117.50 Aligned_cols=104 Identities=24% Similarity=0.368 Sum_probs=94.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|+++ .+|..+.++++|+.|++++|.+++..+..|.++++|++|++++|++++..|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57899999999998 78889999999999999999999777778999999999999999999766678999999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCeeChhhhhcCccccEEEeC
Confidence 9999997666678999999999874
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=118.75 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=94.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 67899999999999777778999999999999999999777777899999999999999999777888999999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..|..+..+++|+.|+++
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCcCCEECHHHhcCCCCCCEEEec
Confidence 9999998888899999999999874
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=118.82 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=102.3
Q ss_pred CcccceeeeCCC---------CCcEEEEEecCCCCcccCC-ccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeecc
Q 041146 65 FCNWVGVTCSLF---------NERVTALKLESKQLVGSIP-PSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLT 134 (182)
Q Consensus 65 ~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls 134 (182)
.|.|..+.|... ...++.|++++|++++..+ ..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 366777777532 1467899999999997755 458899999999999999997777789999999999999
Q ss_pred CCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 135 YNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 135 ~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|++++..|..+.++++|++|++++|++++..|..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 999997666779999999999999999999889999999999999985
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=4.7e-16 Score=131.95 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=90.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
..++.|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..+.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999777788999999999999999999666667899999999999999999433456888999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..|+++++|++|+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCcCCCCChhhhhcCcccCeeccc
Confidence 9999987766678889999998874
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=7.6e-16 Score=119.01 Aligned_cols=103 Identities=23% Similarity=0.248 Sum_probs=59.4
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.++.|++++|++++..+..|.++++|++|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46667777776665544566666666777766666663323334556666666666666663333344555556666666
Q ss_pred cCcCcCCCCccccCCccCCeEec
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+|++++..+..+..+++|+.|++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCeeCHHHhCcCcCCCEEEC
Confidence 55555544444555555555554
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=2.7e-16 Score=137.69 Aligned_cols=83 Identities=39% Similarity=0.554 Sum_probs=71.4
Q ss_pred CCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeE
Q 041146 100 NLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEII 179 (182)
Q Consensus 100 ~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 179 (182)
.+++|+.||+++|+++|.+|..++++++|+.|++++|+++|.+|..++++++|++||+++|+++|.+|..+.++++|++|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 35678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ecC
Q 041146 180 RLG 182 (182)
Q Consensus 180 ~Ls 182 (182)
+++
T Consensus 710 ~ls 712 (768)
T 3rgz_A 710 DLS 712 (768)
T ss_dssp ECC
T ss_pred ECc
Confidence 875
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1e-15 Score=115.23 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=104.0
Q ss_pred CcccceeeeCCC---------CCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccC
Q 041146 65 FCNWVGVTCSLF---------NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135 (182)
Q Consensus 65 ~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~ 135 (182)
.|.|..+.|... ..+++.|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 367777887643 14799999999999987777899999999999999999988899999999999999999
Q ss_pred CcCCCccch-hccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 136 NYLSGSIPS-NLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 136 n~l~g~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|+++ .+|. .+.++++|++|++++|++++..|..+..+++|+.|+++
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 9999 6665 46889999999999999999889999999999999985
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=1.7e-16 Score=125.35 Aligned_cols=105 Identities=30% Similarity=0.543 Sum_probs=94.6
Q ss_pred CcEEEEEecC-CCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLES-KQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 6788999995 889988999999999999999999999988999899999999999999999988999999999999999
Q ss_pred cccCcCcCCCCccccCCc-cCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLE-KLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~-~L~~L~Ls 182 (182)
+++|++++.+|..+.+++ +|+.|+++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 999999988898888887 88888874
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2.5e-15 Score=114.89 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=85.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 67888888888888777777888888888888888888655566788888888888888888444445678888999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCcCCccCHHHcCcCcCCCEEECC
Confidence 9998887666678888889888874
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=6.6e-16 Score=129.74 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=79.7
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..|..+.++++|++|++++|.+++..|..+..+++|++|++++|++++..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46788888888888777777888888888888888888666677788888888888888888555556778888888888
Q ss_pred ccCcCcC-CCCccccCCccCCeEec
Q 041146 158 SANGLIG-QIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~-~~p~~l~~l~~L~~L~L 181 (182)
++|++++ ..|..++++++|++|++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCcccccchhhhhhccCCccEEEC
Confidence 8888775 34566777777777775
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=3.7e-15 Score=112.74 Aligned_cols=104 Identities=23% Similarity=0.215 Sum_probs=94.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 68999999999998655566899999999999999999665666789999999999999999 89999999999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 143 ~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 143 DQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCcCCccCHHHHhCCCCCCEEEee
Confidence 9999997777779999999999874
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=4.8e-15 Score=113.32 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=90.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 68999999999999777777889999999999999999555555788999999999999999544557889999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCcCCccCHHHHhCCCCCCEEEee
Confidence 9999998777788899999999874
No 23
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.2e-15 Score=107.68 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=90.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCc-cchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGS-IPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~-~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|++++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|+
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 7899999999999865 7788999999999999999977888888899999999999999952 347889999999999
Q ss_pred cccCcCcCCCC---ccccCCccCCeEecC
Q 041146 157 TSANGLIGQIP---DRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p---~~l~~l~~L~~L~Ls 182 (182)
+++|.+++..+ ..+..+++|+.|+++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999997655 478899999999874
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=120.19 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=55.0
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchh-ccCCCCCCEEEc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSN-LSHCRELRVFDT 157 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L~L 157 (182)
+++.|++++|++++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|+++ .+|.. ++++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence 4556666666655444445555566666666666555444445555555666666666555 33332 555555555655
Q ss_pred ccCcCcCCCC-ccccCCccCCeEec
Q 041146 158 SANGLIGQIP-DRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p-~~l~~l~~L~~L~L 181 (182)
++|++++..+ ..+.++++|++|++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCCCcccCchhhhccCCCCcEEEC
Confidence 5555553222 24555555555554
No 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=5.7e-15 Score=106.90 Aligned_cols=88 Identities=20% Similarity=0.159 Sum_probs=55.6
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45666677777666655666666667777777777666444444566666777777777666333334666666777777
Q ss_pred ccCcCcCC
Q 041146 158 SANGLIGQ 165 (182)
Q Consensus 158 ~~N~l~~~ 165 (182)
++|.++..
T Consensus 110 ~~N~~~c~ 117 (170)
T 3g39_A 110 LNNPWDCA 117 (170)
T ss_dssp CSSCBCTT
T ss_pred CCCCCCCC
Confidence 77666544
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=3.2e-15 Score=118.85 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=51.9
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
+++.|++++|+++ .+|+.+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|++|+++
T Consensus 207 ~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 3444444444444 233344445555555555555544555555555555555555555555555555555555555555
Q ss_pred cCcCcCCCCccccCCccCCeEec
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+|++.+.+|+.++++++|+.+++
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CCCchhhccHHHhhccCceEEeC
Confidence 55555555555555555555443
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=7.5e-15 Score=109.07 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=91.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 68999999999999666666889999999999999999655556789999999999999999555556889999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+.++++|+.|+++
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCccceeCHHHhccCCCccEEEec
Confidence 9999997777678899999999874
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=6.8e-15 Score=125.02 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=82.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..|..|.++++|++|++++|.+++..|..+.++++|++|++++|++.+..|..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 57788888888887776777788888888888888887666777888888888888888887544467788888888888
Q ss_pred ccCcCcC-CCCccccCCccCCeEecC
Q 041146 158 SANGLIG-QIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~-~~p~~l~~l~~L~~L~Ls 182 (182)
++|.+++ .+|..++++++|++|+++
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CCCcccceechHhHhhcCCCCEEEcc
Confidence 8888875 568888888888888764
No 29
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=5.5e-15 Score=118.83 Aligned_cols=105 Identities=19% Similarity=0.150 Sum_probs=64.7
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+.++++|+.|++
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 45666666666666555556666666666666666666444445666666667777666666444566666667777777
Q ss_pred ccCcCcCCCCccc---cCCccCCeEecC
Q 041146 158 SANGLIGQIPDRL---SSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l---~~l~~L~~L~Ls 182 (182)
++|++++..+..+ ..+++|+.|+++
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 7776664333333 456666666653
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=1.3e-14 Score=112.24 Aligned_cols=104 Identities=23% Similarity=0.264 Sum_probs=56.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 34555555555555444444555555555555555555433334455555666666666555433334455566666666
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++..|..+..+++|+.|++
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCccCHHHHhCCcCCCEEEc
Confidence 666666555555556666666654
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=3.1e-15 Score=122.96 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=50.6
Q ss_pred cEEEEEecCCCCcccC-CccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchh--ccCCCCCCEE
Q 041146 79 RVTALKLESKQLVGSI-PPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSN--LSHCRELRVF 155 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~--~~~l~~L~~L 155 (182)
+++.|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++++|++|++++|++++.+|.. ++.+++|++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 3444444444443332 233444455555555555554444444555555555555555555433333 4555555555
Q ss_pred EcccCcCcCCCCcc-ccCCccCCeEec
Q 041146 156 DTSANGLIGQIPDR-LSSLEKLEIIRL 181 (182)
Q Consensus 156 ~L~~N~l~~~~p~~-l~~l~~L~~L~L 181 (182)
++++|++++..|.. +.++++|++|++
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred ECCCCccCccCcccccCCCCcccEEeC
Confidence 55555555444443 455555555554
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4e-15 Score=107.01 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=88.6
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc--hhccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP--SNLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p--~~~~~l~~L~~L 155 (182)
++++.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|+++ .+| ..+..+++|++|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC-SSGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC-cchhHHHHhcCCCCCEE
Confidence 6799999999999865 77889999999999999999778887778999999999999999 444 788899999999
Q ss_pred EcccCcCcCCCC---ccccCCccCCeEecC
Q 041146 156 DTSANGLIGQIP---DRLSSLEKLEIIRLG 182 (182)
Q Consensus 156 ~L~~N~l~~~~p---~~l~~l~~L~~L~Ls 182 (182)
++++|.+++..+ ..+..+++|+.|+++
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 999999996655 478899999998763
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.2e-14 Score=105.58 Aligned_cols=96 Identities=24% Similarity=0.314 Sum_probs=49.9
Q ss_pred EEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccch-hccCCCCCCEEEcccC
Q 041146 82 ALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS-NLSHCRELRVFDTSAN 160 (182)
Q Consensus 82 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~L~~N 160 (182)
.+++++|++. .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|+++ .+|. .+.++++|++|++++|
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCC
Confidence 4555555554 4444432 45555555555555444555555555555555555555 2332 2345555555555555
Q ss_pred cCcCCCCccccCCccCCeEec
Q 041146 161 GLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 161 ~l~~~~p~~l~~l~~L~~L~L 181 (182)
++++..+..+..+++|+.|++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEEC
T ss_pred ccceeCHHHhccccCCCEEEe
Confidence 555433334555555555554
No 34
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.6e-15 Score=107.02 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=93.3
Q ss_pred CcEEEEEecCCCCc-ccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLV-GSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|+++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57899999999998 78899899999999999999999955 6789999999999999999977888888899999999
Q ss_pred cccCcCcCC-CCccccCCccCCeEecC
Q 041146 157 TSANGLIGQ-IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~-~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++. .+..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 999999963 34788999999999875
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.5e-14 Score=111.86 Aligned_cols=105 Identities=27% Similarity=0.226 Sum_probs=94.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++++++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 78999999999999777777899999999999999999766667899999999999999999655566789999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCccCHHHhcCCccCCEEECC
Confidence 9999998877778999999999875
No 36
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=7.2e-15 Score=105.63 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=90.5
Q ss_pred CcEEEEEecCCCCc-ccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLV-GSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67899999999998 78888889999999999999999854 6788999999999999999977888888899999999
Q ss_pred cccCcCcCCC-CccccCCccCCeEecC
Q 041146 157 TSANGLIGQI-PDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~-p~~l~~l~~L~~L~Ls 182 (182)
+++|++++.. +..+..+++|+.|+++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEee
Confidence 9999998642 2678899999999875
No 37
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=2.1e-14 Score=103.85 Aligned_cols=99 Identities=25% Similarity=0.292 Sum_probs=86.8
Q ss_pred EEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccC
Q 041146 81 TALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSAN 160 (182)
Q Consensus 81 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N 160 (182)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|++++..+..+.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 47889999988 5777664 89999999999999877888999999999999999999544455789999999999999
Q ss_pred cCcCCCCccccCCccCCeEecC
Q 041146 161 GLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 161 ~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++++..+..+.++++|+.|+++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECC
T ss_pred ccCEeCHHHhcCCCCCCEEEeC
Confidence 9998777779999999999985
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=2.9e-14 Score=110.70 Aligned_cols=105 Identities=22% Similarity=0.209 Sum_probs=86.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCC-CCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENN-FHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|.+++..|..+..+++|++|++++|. ++...|..+..+++|++|++++|++++..|..+.++++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 678888888888887778888888888888888887 6655577788888889999988888866677788888899999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++..+..+.++++|+.|+++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcccccCHhHhccCCCccEEECC
Confidence 99998887666678888888888874
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=1.5e-14 Score=122.88 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=55.9
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.++.|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|++++..|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45555555555555545555555555555555555554445555555555555555555554445555555555555555
Q ss_pred cCcCcCCCCccccCCccCCeEec
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+|++++..|..++++++|++|++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccCcccCCcchhccCCcccEEEC
Confidence 55555433444455555555544
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=3.4e-14 Score=109.81 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=85.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|++.+..+..++++++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 67888888888888666667888888888888888888666677888888888888888888554556888888999999
Q ss_pred ccCcCcCC-CCccccCCccCCeEecC
Q 041146 158 SANGLIGQ-IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~-~p~~l~~l~~L~~L~Ls 182 (182)
++|++++. +|..+.++++|+.|+++
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred cCCccceecCchhhccCCCCCEEECC
Confidence 99988863 58888888899988874
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=2.5e-14 Score=121.99 Aligned_cols=104 Identities=20% Similarity=0.202 Sum_probs=90.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchh-ccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSN-LSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L~ 156 (182)
++++.|++++|.+.+..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.++ .+|.. ++++++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence 36788899999998877778999999999999999999777777889999999999999999 55554 58899999999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|.+++..|..+.++++|+.|+++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECc
Confidence 99999998888889999999999874
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=2e-14 Score=118.12 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=86.6
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 57888888888888777778888888888888888888777777888888888888888888666778888888888888
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCccccCCHhHhccCCcccEEEcc
Confidence 8888887666667888888888874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=3.4e-14 Score=112.62 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=99.9
Q ss_pred CcccceeeeCCC---------CCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccC
Q 041146 65 FCNWVGVTCSLF---------NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135 (182)
Q Consensus 65 ~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~ 135 (182)
.|.|..+.|... .++++.|++++|++.+..|..+.++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 478888888643 15789999999999977788899999999999999999988788999999999999999
Q ss_pred CcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 136 NYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 136 n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|+++ .+|..+. ++|++|++++|++++..+..+.++++|+.|+++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 9999 8887665 789999999999987666678899999998874
No 44
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=6.5e-14 Score=109.51 Aligned_cols=103 Identities=26% Similarity=0.289 Sum_probs=64.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 45666666666665 55556666666777777777666444455666666777777777666333344556666666677
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++..+..+.++++|+.|++
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCccCHHHhcCcCCCCEEEC
Confidence 666666444444556666666665
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=2.5e-14 Score=117.95 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=89.2
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++++..+..|.++++|+.|++++|.+++..|..+.++++|++|++++|++++..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999888888999999999999999999777788899999999999999999544456888999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+.++++|+.|+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCC
Confidence 9999986666667777777777763
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=118.02 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=66.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++++|++.+..|..+.++++|+.|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 45666666666666655666666666666666666666333334566666666666666666555566666666666666
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|.+++..|..+.++++|+.|++
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEE
T ss_pred CCCccceeChhhccCCCCCCEEEC
Confidence 666666666666666667766665
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=4.9e-14 Score=109.38 Aligned_cols=105 Identities=19% Similarity=0.172 Sum_probs=85.4
Q ss_pred CcEEEEEecCCC-CcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQ-LVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|+ +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..++.+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 678888998887 7655577788888899999999888876677788888899999999888854445678888899999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++..+..+..+++|+.|+++
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCcccccCHHHhcCccccCEEECC
Confidence 99888886666668888888888874
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=3.6e-14 Score=120.58 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=70.1
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|++++..|..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 45667777777776666666666777777777777766555666666677777777777766555666667777777777
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..|..++++++|++|+++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred cCCccccccccccCCCCCCCEEeCC
Confidence 7777665555566666777766653
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=126.75 Aligned_cols=104 Identities=23% Similarity=0.293 Sum_probs=59.0
Q ss_pred CcEEEEEecCCCCcccC-CccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchh--ccCCCCCCE
Q 041146 78 ERVTALKLESKQLVGSI-PPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSN--LSHCRELRV 154 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~--~~~l~~L~~ 154 (182)
.+++.|++++|...+.+ |..|.++++|++|++++|.+++..|..+.++++|++|++++|++++.+|.. ++++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 34455555555433333 444555666666666666665555555666666666666666666544443 556666666
Q ss_pred EEcccCcCcCCCC-ccccCCccCCeEec
Q 041146 155 FDTSANGLIGQIP-DRLSSLEKLEIIRL 181 (182)
Q Consensus 155 L~L~~N~l~~~~p-~~l~~l~~L~~L~L 181 (182)
|++++|.+++..+ ..++++++|++|++
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred EECCCCcccccccchhHhhCCCCCEEEC
Confidence 6666666655433 34566666666655
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=4.7e-14 Score=111.64 Aligned_cols=114 Identities=20% Similarity=0.325 Sum_probs=83.9
Q ss_pred CcccceeeeCCC---------CCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccC
Q 041146 65 FCNWVGVTCSLF---------NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135 (182)
Q Consensus 65 ~c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~ 135 (182)
.|.+..+.|... .+.++.|++++|++++..+..+.++++|++|++++|.+++..|..+..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 467888887632 15788999999999977777889999999999999999977788899999999999999
Q ss_pred CcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEec
Q 041146 136 NYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 136 n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
|+++ .+|..+. ++|++|++++|++++..+..+.++++|+.|++
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 9888 6665443 45666666666555444444455555555544
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=4.7e-14 Score=104.09 Aligned_cols=101 Identities=19% Similarity=0.357 Sum_probs=75.2
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCc-CCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNY-LSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~-l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+ ++ .+| .+..+++|+.|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence 567777888887777677777777888888888888776667777777888888888877 44 565 577777888888
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++ ++ .+..+++|+.|+++
T Consensus 166 l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 166 IQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred CCCCCCcC-hH-HhccCCCCCEEEee
Confidence 88887774 33 56777778877764
No 52
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=4.8e-14 Score=103.84 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=88.4
Q ss_pred EEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCcc-ccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEccc
Q 041146 81 TALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPD-EIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSA 159 (182)
Q Consensus 81 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~-~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~ 159 (182)
+.+++++++++ .+|..+.. +++.|++++|.+++..+. .+..+++|++|++++|++++..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 58999999996 77876654 899999999999965554 388999999999999999987789999999999999999
Q ss_pred CcCcCCCCccccCCccCCeEecC
Q 041146 160 NGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 160 N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|++++..|..+..+++|++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECC
T ss_pred CcCCccCHHHhcCCCCCCEEECC
Confidence 99998888889999999999985
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=8.5e-14 Score=107.44 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=41.0
Q ss_pred EEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEccc
Q 041146 80 VTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSA 159 (182)
Q Consensus 80 l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~ 159 (182)
++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.++++|++|++++
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 33333333333333333333444444444444444422222234444444444444444422222344444444444444
Q ss_pred CcCcCCCCccccCCccCCeEec
Q 041146 160 NGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 160 N~l~~~~p~~l~~l~~L~~L~L 181 (182)
|++++..+..+..+++|+.|++
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 191 NQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEEC
T ss_pred CcCCcCCHHHhccccCCCEEEe
Confidence 4444333333444444444443
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=4.2e-14 Score=119.90 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=93.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..++++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 68999999999999777788999999999999999999665667899999999999999999544456899999999999
Q ss_pred ccCcCcC-CCCccccCCccCCeEecC
Q 041146 158 SANGLIG-QIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~-~~p~~l~~l~~L~~L~Ls 182 (182)
++|.+++ ..|..++.+++|+.|+++
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred ccCccccCCCchhhccchhhhhhccc
Confidence 9999976 467888999999999875
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=5.1e-14 Score=108.79 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=73.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCC-ccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSG-SIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+.++++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 567778888887776666777777888888888887775555567777778888888887774 3577777777888888
Q ss_pred cccCcCcCCCCccccCCccCC
Q 041146 157 TSANGLIGQIPDRLSSLEKLE 177 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~ 177 (182)
+++|++++..+..+..+++|+
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCCCcCCHHHhhhhhhcc
Confidence 888877766666666666665
No 56
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=3.4e-14 Score=120.77 Aligned_cols=101 Identities=27% Similarity=0.402 Sum_probs=81.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCcc-chhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSI-PSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~-p~~~~~l~~L~~L~ 156 (182)
.+++.|++++|+++ .+|..++.+++|+.|++++|.+++ +| .+..+++|++|++++|++++.. |..++.+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 57888889888888 778888888889999999988885 67 7888888999999998888655 88888888899999
Q ss_pred cccCcCcCCCCcc---ccCCccCCeEec
Q 041146 157 TSANGLIGQIPDR---LSSLEKLEIIRL 181 (182)
Q Consensus 157 L~~N~l~~~~p~~---l~~l~~L~~L~L 181 (182)
+++|.+++..|.. +..+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9988888665432 234778888875
No 57
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=1.3e-14 Score=124.63 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=98.9
Q ss_pred CcccceeeeC-CCCCcEEEEEecCCCCccc-----------------CCcccc--CCCCCCEEEeeCCCCCCCCccccCC
Q 041146 65 FCNWVGVTCS-LFNERVTALKLESKQLVGS-----------------IPPSVG--NLTCLKVINLQENNFHGQIPDEIGR 124 (182)
Q Consensus 65 ~c~~~gv~c~-~~~~~l~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~L~l~~n~l~g~~p~~l~~ 124 (182)
.+...|+.-. ..-++++.|++++|.+++. +|..++ ++++|++|++++|.+.|.+|+.+.+
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 3456663221 1127899999999999985 899998 9999999999999999999999999
Q ss_pred CCCCcEeeccCCc-CCC-ccchhccCC------CCCCEEEcccCcCcCCCCc--cccCCccCCeEecC
Q 041146 125 LQQLQDLNLTYNY-LSG-SIPSNLSHC------RELRVFDTSANGLIGQIPD--RLSSLEKLEIIRLG 182 (182)
Q Consensus 125 l~~L~~L~ls~n~-l~g-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls 182 (182)
+++|++|++++|+ ++| .+|..++++ ++|++|++++|+++ .+|. .++++++|+.|+++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 9999999999998 998 889888776 88999999999988 7887 88888899888874
No 58
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=5e-14 Score=113.19 Aligned_cols=117 Identities=19% Similarity=0.159 Sum_probs=96.4
Q ss_pred cccceeeeCCC---------CCcEEEEEecCCCCcccCCcccc-CCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccC
Q 041146 66 CNWVGVTCSLF---------NERVTALKLESKQLVGSIPPSVG-NLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135 (182)
Q Consensus 66 c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~ 135 (182)
|.+..+.|... ...++.|++++|++++..+..+. .+++|+.|++++|++++..+..+.++++|++|++++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 55666666432 14578899999999977777777 899999999999999966667788999999999999
Q ss_pred CcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 136 NYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 136 n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|++++..+..+.++++|++|++++|++++..|..|.++++|+.|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence 99985445568889999999999999998878889999999999875
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.51 E-value=4.4e-14 Score=119.44 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=81.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|+++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57788888888888766678888888888888888888776777888888888888888888 77766 7888888888
Q ss_pred ccCcCcC-CCCccccCCccCCeEecC
Q 041146 158 SANGLIG-QIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~-~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++ ..|..++++++|++|+++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLS 154 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecC
Confidence 8888876 346778888888888763
No 60
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.4e-13 Score=101.55 Aligned_cols=98 Identities=22% Similarity=0.329 Sum_probs=87.5
Q ss_pred EEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccC
Q 041146 81 TALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSAN 160 (182)
Q Consensus 81 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N 160 (182)
+.+++++++++ .+|..+. .+|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 36788888888 6776654 68999999999999 88999999999999999999999666678999999999999999
Q ss_pred cCcCCCCccccCCccCCeEecC
Q 041146 161 GLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 161 ~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++++..|..|..+++|+.|+++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECC
T ss_pred ccCEeCHHHhCCCCCCCEEECC
Confidence 9998888889999999999985
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=120.11 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=74.1
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..|..|.++++|++|++++|.+++..|..+.++++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 56777777777777666667777777777777777777666667777777777777777777 66665 6777777777
Q ss_pred ccCcCcC-CCCccccCCccCCeEec
Q 041146 158 SANGLIG-QIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~-~~p~~l~~l~~L~~L~L 181 (182)
++|++++ .+|..++++++|++|++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred cCCccccccchhhhccCCcceEEEe
Confidence 7777776 45677777777777765
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=6.7e-14 Score=109.56 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=79.0
Q ss_pred CcEEEEEecCCCCcc-cCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVG-SIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 567777777777775 4667777778888888888887766677777778888888888887754455677778888888
Q ss_pred cccCcCcCCCCccccCCc-cCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLE-KLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~-~L~~L~Ls 182 (182)
+++|++++..|..+..++ +|+.|+++
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 888888877777777774 78887764
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=9.6e-14 Score=114.14 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=71.3
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
..++.|++++|++++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|+++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45677777777777666677777777777777777777555566777777777777777777333345677777777777
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++..+..+.++++|+.|++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcccccCHHHhhhCcccCEeCC
Confidence 777776555555666666666655
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=4.6e-14 Score=110.52 Aligned_cols=105 Identities=19% Similarity=0.292 Sum_probs=73.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCC-CCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHG-QIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g-~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 456677777777766666666777777777777777765 4566677777777777777777755566677777777777
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++..+..+..+++|+.|+++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCCCccCccChhhccCcccCCEeECC
Confidence 77777776655567777777777764
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.50 E-value=1.2e-13 Score=111.66 Aligned_cols=104 Identities=20% Similarity=0.202 Sum_probs=86.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchh-ccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSN-LSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L~ 156 (182)
++++.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. +.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 56788888888888777778888899999999999988766777888889999999999888 66655 57888999999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++..|..+.++++|+.|+++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CCCCccCccChhhccCCCCCCEEECC
Confidence 99999887777778888888888874
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.49 E-value=7.1e-14 Score=120.33 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=76.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|.+++..|..+.++++|++|++++|.+++..+..+.++++|++|++++|++++..|..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 56777777777777666777777777777777777777333335777778888888888777544566777788888888
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|.+++..|..+.++++|++|+++
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred CCCcccccCchhhcccccCCEEEcc
Confidence 8888877777777777888877764
No 67
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=3.6e-14 Score=123.75 Aligned_cols=101 Identities=27% Similarity=0.425 Sum_probs=93.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
..++.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|+++ .+|..++++++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 56889999999998 78888889999999999999999 89999999999999999999999 89999999999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|.++ .+|..|+++++|+.|+|+
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCCCC-ccChhhhcCCCccEEeCC
Confidence 999997 778889999999999985
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.1e-13 Score=102.19 Aligned_cols=102 Identities=17% Similarity=0.252 Sum_probs=88.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|.+. .++.+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..++.+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 67899999999765 3457889999999999999999878888999999999999999999878888999999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++.+.+| .+..+++|+.|+++
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred cCCCCccccH-hhcCCCCCCEEECC
Confidence 9998444565 68899999999874
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.48 E-value=2.5e-14 Score=112.66 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=54.2
Q ss_pred CcEEEEEecCCCCcccCCccc--cCCCCCCEEEeeCCCCCCCCccccCCC-----CCCcEeeccCCcCCCccchhccCCC
Q 041146 78 ERVTALKLESKQLVGSIPPSV--GNLTCLKVINLQENNFHGQIPDEIGRL-----QQLQDLNLTYNYLSGSIPSNLSHCR 150 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l--~~l~~L~~L~l~~n~l~g~~p~~l~~l-----~~L~~L~ls~n~l~g~~p~~~~~l~ 150 (182)
.+++.|++++|++++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..+++++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 345555666665555555554 5555555666665555543 4444443 5555555555555544445555555
Q ss_pred CCCEEEcccCcCcCC--CCccc--cCCccCCeEec
Q 041146 151 ELRVFDTSANGLIGQ--IPDRL--SSLEKLEIIRL 181 (182)
Q Consensus 151 ~L~~L~L~~N~l~~~--~p~~l--~~l~~L~~L~L 181 (182)
+|++|++++|++.+. .|..+ .++++|++|++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 208 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEEC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEEC
Confidence 555555555555443 12222 45555555554
No 70
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=3.8e-14 Score=102.81 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=85.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccch--hccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS--NLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~L 155 (182)
++++.|++++|++++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 4789999999999865 67889999999999999999543344488999999999999997 7786 78899999999
Q ss_pred EcccCcCcCCCCcc----ccCCccCCeEecC
Q 041146 156 DTSANGLIGQIPDR----LSSLEKLEIIRLG 182 (182)
Q Consensus 156 ~L~~N~l~~~~p~~----l~~l~~L~~L~Ls 182 (182)
++++|.++ .+|.. +..+++|+.||++
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence 99999998 45664 8889999998863
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=2.8e-14 Score=124.45 Aligned_cols=147 Identities=19% Similarity=0.156 Sum_probs=89.4
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCC-CCCcccceeeeCCC----------------CCcEEEEEecCCCCcc---
Q 041146 33 IEVDDKLALIDFKSHITQDPLQIMSSWNDS-IHFCNWVGVTCSLF----------------NERVTALKLESKQLVG--- 92 (182)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~-~~~c~~~gv~c~~~----------------~~~l~~L~l~~n~l~~--- 92 (182)
..+.++.+++++.....+..+.....|... ...+.|.+..+... ...+..++++.+.+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~ 208 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD 208 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCccc
Confidence 345667888888876644434334455432 33456665544321 0122333444444332
Q ss_pred ------cCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCC
Q 041146 93 ------SIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQI 166 (182)
Q Consensus 93 ------~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~ 166 (182)
..+..+..+..|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++++++|++|+|++|+++ .+
T Consensus 209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 209 IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred cccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence 33667888999999999999999 88988889999999999999999 99999999999999999999999 78
Q ss_pred CccccCCccCCeEecC
Q 041146 167 PDRLSSLEKLEIIRLG 182 (182)
Q Consensus 167 p~~l~~l~~L~~L~Ls 182 (182)
|..++++++|++|+|+
T Consensus 286 p~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFF 301 (727)
T ss_dssp CSSGGGGTTCSEEECC
T ss_pred ChhhcCCCCCCEEECC
Confidence 9999999999999985
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=114.03 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=75.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~ 156 (182)
.+++.|++++|++++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|+++ .+| ..+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEE
Confidence 45677777777777666677777777777777777777666777777777777777777777 444 3466777777777
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++..|..+.++++|+.|+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCCCccccCChhHccccccCCEEECC
Confidence 77777777667777777777777663
No 73
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=2.6e-13 Score=108.09 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=58.2
Q ss_pred EecCC-CCcccCCccccCCCCCCEEEeeC-CCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCc
Q 041146 84 KLESK-QLVGSIPPSVGNLTCLKVINLQE-NNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANG 161 (182)
Q Consensus 84 ~l~~n-~l~~~~p~~l~~l~~L~~L~l~~-n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~ 161 (182)
+++++ +++ .+|. +..+++|+.|+|++ |.+++..|..|.++++|++|+|++|++++..|..+.++++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444 455 3555 66666677777764 66665555566666777777777777665555566666677777777777
Q ss_pred CcCCCCccccCCccCCeEec
Q 041146 162 LIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 162 l~~~~p~~l~~l~~L~~L~L 181 (182)
+++..+..+..++ |+.|++
T Consensus 92 l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEEC
T ss_pred cceeCHHHcccCC-ceEEEe
Confidence 6654444444443 666655
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=4.2e-13 Score=104.87 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=91.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccch-hccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS-NLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~ 156 (182)
++++.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|. .+..+++|++|+
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEE
Confidence 68999999999999777788999999999999999999665666789999999999999999 5664 567899999999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|+++ .+|..+...++|+.++++
T Consensus 179 L~~N~l~-~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 179 LQENSLY-TIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred CCCCcCC-ccChhhcccccCCeEEeC
Confidence 9999999 778888888899999874
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=116.01 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=80.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCC-CCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFH-GQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+.++++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 46677777777777667777777778888888887776 46777777788888888888888866677778888888888
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++..|..+.++++|+.|+++
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEec
Confidence 88888887766777788888888764
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=2.1e-13 Score=103.28 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=41.2
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCC-CCCCCccccCCCCCCcEeeccC-CcCCCccchhccCCCCCCEEE
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENN-FHGQIPDEIGRLQQLQDLNLTY-NYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~g~~p~~l~~l~~L~~L~ls~-n~l~g~~p~~~~~l~~L~~L~ 156 (182)
+++.|++++|++++..+..+.++++|++|++++|. +++..+..+.++++|++|++++ |++++..+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4422233444555555555554 555522223444555555555
Q ss_pred cccCcCc
Q 041146 157 TSANGLI 163 (182)
Q Consensus 157 L~~N~l~ 163 (182)
+++|+++
T Consensus 112 l~~n~l~ 118 (239)
T 2xwt_C 112 IFNTGLK 118 (239)
T ss_dssp EEEECCC
T ss_pred CCCCCCc
Confidence 5555444
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=1.1e-13 Score=111.88 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=91.3
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..++++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 57889999999988544445788999999999999999776778999999999999999999766778999999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|+++...+..+.++++|++|+++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECC
Confidence 9999995544557899999999875
No 78
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=5e-14 Score=124.88 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=96.9
Q ss_pred cccceeeeC-CCCCcEEEEEecCCCCcc-----------------cCCcccc--CCCCCCEEEeeCCCCCCCCccccCCC
Q 041146 66 CNWVGVTCS-LFNERVTALKLESKQLVG-----------------SIPPSVG--NLTCLKVINLQENNFHGQIPDEIGRL 125 (182)
Q Consensus 66 c~~~gv~c~-~~~~~l~~L~l~~n~l~~-----------------~~p~~l~--~l~~L~~L~l~~n~l~g~~p~~l~~l 125 (182)
+...|+... ..-++++.|++++|++++ .+|..++ ++++|++|++++|.+.+.+|..+.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 455554321 112689999999999998 4899988 99999999999999999999999999
Q ss_pred CCCcEeeccCCc-CCC-ccchhccCCC-------CCCEEEcccCcCcCCCCc--cccCCccCCeEecC
Q 041146 126 QQLQDLNLTYNY-LSG-SIPSNLSHCR-------ELRVFDTSANGLIGQIPD--RLSSLEKLEIIRLG 182 (182)
Q Consensus 126 ~~L~~L~ls~n~-l~g-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls 182 (182)
++|++|++++|+ ++| .+|..+++++ +|++|++++|+++ .+|. .+.++++|+.|+++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC
Confidence 999999999998 998 7887766554 8999999999998 7887 88888899888874
No 79
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1.8e-13 Score=116.33 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=92.4
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
.++.|++++|++++ +|. ++.+++|+.|++++|.++ .+|..++.+++|++|++++|++++ +| .++++++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57899999999995 676 999999999999999999 899999999999999999999994 88 89999999999999
Q ss_pred cCcCcCCC-CccccCCccCCeEecC
Q 041146 159 ANGLIGQI-PDRLSSLEKLEIIRLG 182 (182)
Q Consensus 159 ~N~l~~~~-p~~l~~l~~L~~L~Ls 182 (182)
+|++++.. |..++.+++|+.|+++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEec
Confidence 99999887 9999999999999985
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=113.64 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=89.7
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|++++..+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 67889999999988777778889999999999999998766778889999999999999988433346889999999999
Q ss_pred ccCcCcC-CCCccccCCccCCeEecC
Q 041146 158 SANGLIG-QIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~-~~p~~l~~l~~L~~L~Ls 182 (182)
++|.+++ .+|..++++++|+.|+++
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCccceecChhhhcccCCCCEEeCc
Confidence 9999987 478889999999999874
No 81
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=4.7e-13 Score=97.19 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=77.3
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccch-hccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS-NLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~ 156 (182)
.+++.|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|+++ .+|. .+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEE
Confidence 57899999999999888889999999999999999999644445689999999999999999 5554 589999999999
Q ss_pred cccCcCcCC
Q 041146 157 TSANGLIGQ 165 (182)
Q Consensus 157 L~~N~l~~~ 165 (182)
+++|.+...
T Consensus 112 L~~N~~~c~ 120 (174)
T 2r9u_A 112 LYNNPWDCE 120 (174)
T ss_dssp CCSSCBCTT
T ss_pred eCCCCcccc
Confidence 999999854
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=2.3e-13 Score=114.27 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=83.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCC-ccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSG-SIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g-~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|++++..|..|.++++|++|++++|.+++..|..+.++++|++|++++|++++ ..|..++++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 678899999999888777888889999999999999886666668888899999999988885 3566788888888888
Q ss_pred cccCcCcCCCC-ccccCCccCCeEec
Q 041146 157 TSANGLIGQIP-DRLSSLEKLEIIRL 181 (182)
Q Consensus 157 L~~N~l~~~~p-~~l~~l~~L~~L~L 181 (182)
+++|++.+.+| ..+.++++|++|++
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCCCccccccCHhhhhcccccCeeec
Confidence 88887554554 46777778877775
No 83
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.45 E-value=4.6e-13 Score=113.76 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=91.9
Q ss_pred CcccceeeeCCC--CCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCcc
Q 041146 65 FCNWVGVTCSLF--NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSI 142 (182)
Q Consensus 65 ~c~~~gv~c~~~--~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~ 142 (182)
.+...++..... -++++.|++++|++.+..|..|.++++|++|++++|.+++..|..+.++++|++|++++|++++..
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 344455533221 267889999999998888888999999999999999998777888888999999999999988555
Q ss_pred chhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 143 PSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 143 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
|..++++++|++|++++|++++..++.+..+++|++|+++
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 6778888889999999988887443444458888888764
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=2.6e-13 Score=116.77 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..|..++++++|++|++
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 34555566655555333334555556666666665555444445555555666666666555554555555555666666
Q ss_pred ccCcCcCCCCcccc--CCccCCeEec
Q 041146 158 SANGLIGQIPDRLS--SLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~--~l~~L~~L~L 181 (182)
++|++++..+..+. .+++|+.|++
T Consensus 153 ~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 153 SNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred cCCcccccCHHHhhccccccccEEEC
Confidence 65555544443332 3345555554
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.7e-13 Score=114.41 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=58.9
Q ss_pred cccceeeeCCCCCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccC-CCCCCcEeeccCCcCCC----
Q 041146 66 CNWVGVTCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIG-RLQQLQDLNLTYNYLSG---- 140 (182)
Q Consensus 66 c~~~gv~c~~~~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~-~l~~L~~L~ls~n~l~g---- 140 (182)
|.+.++.+... ++++.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 109 N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~ 187 (487)
T 3oja_A 109 NNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187 (487)
T ss_dssp SCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC
T ss_pred CcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc
Confidence 33444444332 4556666666666655555555566666666666666554454443 34444444444444442
Q ss_pred -----------------ccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEec
Q 041146 141 -----------------SIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 141 -----------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
.+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 233345555555555555555553 3444555555555554
No 86
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=1.4e-12 Score=94.40 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=84.7
Q ss_pred EEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccC
Q 041146 81 TALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSAN 160 (182)
Q Consensus 81 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N 160 (182)
+.+++++++++ .+|..+ .++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 58899999988 566544 379999999999999665566789999999999999999544456789999999999999
Q ss_pred cCcCCCCccccCCccCCeEecC
Q 041146 161 GLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 161 ~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++++..+..+..+++|+.|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECC
T ss_pred CccccCHHHhhCCcccCEEECc
Confidence 9998777778999999999875
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=107.69 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=81.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccch--hccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPS--NLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~--~~~~l~~L~~L 155 (182)
++++.|++++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|+++ .+|. .+.++++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence 67889999999988777778888899999999999988443344788888999999998888 5665 67788888888
Q ss_pred EcccCc-CcCCCCccccCCccCCeEec
Q 041146 156 DTSANG-LIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 156 ~L~~N~-l~~~~p~~l~~l~~L~~L~L 181 (182)
++++|+ +++..|..+.++++|+.|++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEEC
Confidence 888884 55555666777777777765
No 88
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=4.5e-13 Score=97.07 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=84.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCC-CCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchh-ccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLT-CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSN-LSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~-~~~l~~L~~L 155 (182)
.+++.|++++|+++ .+|. +..+. +|++|++++|.+++. +.+..+++|++|++++|+++ .+|.. +..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence 57899999999998 4444 55555 999999999999954 67899999999999999999 56654 4899999999
Q ss_pred EcccCcCcCCCCc--cccCCccCCeEecC
Q 041146 156 DTSANGLIGQIPD--RLSSLEKLEIIRLG 182 (182)
Q Consensus 156 ~L~~N~l~~~~p~--~l~~l~~L~~L~Ls 182 (182)
++++|+++ .+|. .+..+++|+.|+++
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECC
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEec
Confidence 99999996 5665 78899999999874
No 89
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=8.1e-13 Score=108.95 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=61.9
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
+++.|++++|++++ +| .+..+++|+.|++++|.+++..|..+.++++|+.|++++|++++..|..+.++++|+.|+++
T Consensus 197 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 34445555555442 22 34555566666666666665556666666666666666666665555666666677777777
Q ss_pred cCcCcCCCCccccCCccCCeEecC
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|++++..+..+..+++|+.|+++
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECC
T ss_pred CCcCCccChHHhccccCCCEEEcc
Confidence 777765555556666677766653
No 90
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=8.4e-13 Score=108.49 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=47.0
Q ss_pred ccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCC
Q 041146 98 VGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLE 177 (182)
Q Consensus 98 l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 177 (182)
+..+++|+.|++++|.+++..|..+.++++|+.|++++|++++..+..+.++++|+.|++++|++++..+..+..+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 34444555555555555544455555555555555555555544445555566666666666666655555555666666
Q ss_pred eEec
Q 041146 178 IIRL 181 (182)
Q Consensus 178 ~L~L 181 (182)
.|++
T Consensus 283 ~L~L 286 (440)
T 3zyj_A 283 RIHL 286 (440)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
No 91
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=6.5e-13 Score=110.98 Aligned_cols=104 Identities=23% Similarity=0.370 Sum_probs=62.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCC--CCccccCCCCCCcEeeccCCcCCCccchh-ccCCC----
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHG--QIPDEIGRLQQLQDLNLTYNYLSGSIPSN-LSHCR---- 150 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g--~~p~~l~~l~~L~~L~ls~n~l~g~~p~~-~~~l~---- 150 (182)
++++.|++++|++++..|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|.. +..++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 456666666666666666666666666666666666664 34455566666666666666666445542 33333
Q ss_pred ------------------CCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 151 ------------------ELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 151 ------------------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|++|++++|+++ .+|..+..+++|++|+++
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 5555555555555 455555566666666653
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=5.2e-13 Score=101.07 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=79.4
Q ss_pred CcEEEEEecCCC-CcccCCccccCCCCCCEEEeeC-CCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCC--
Q 041146 78 ERVTALKLESKQ-LVGSIPPSVGNLTCLKVINLQE-NNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELR-- 153 (182)
Q Consensus 78 ~~l~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~-n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~-- 153 (182)
++++.|++++|+ +++..+..|.++++|++|++++ |.+++..+..+.++++|++|++++|+++ .+|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccc
Confidence 678888888886 7755556788888888888888 8888555566778888888888888888 4776 77777777
Q ss_pred -EEEcccC-cCcCCCCccccCCccCC-eEecC
Q 041146 154 -VFDTSAN-GLIGQIPDRLSSLEKLE-IIRLG 182 (182)
Q Consensus 154 -~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls 182 (182)
+|++++| ++++..+..+.++++|+ .|+++
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 8888888 77766556677788888 77763
No 93
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=1.4e-12 Score=103.15 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=67.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 46677777777777666777777777777777777777665656777777777777777777 77777777777777777
Q ss_pred ccCcCcCCCCccc
Q 041146 158 SANGLIGQIPDRL 170 (182)
Q Consensus 158 ~~N~l~~~~p~~l 170 (182)
++|++++..+..+
T Consensus 271 ~~N~i~~~~~~~f 283 (330)
T 1xku_A 271 HNNNISAIGSNDF 283 (330)
T ss_dssp CSSCCCCCCTTSS
T ss_pred CCCcCCccChhhc
Confidence 7777775544444
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=4.9e-13 Score=105.27 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=71.6
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCC--Ccccc--CCCCCCcEeeccCCcCCC--ccc-hhccCCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQ--IPDEI--GRLQQLQDLNLTYNYLSG--SIP-SNLSHCR 150 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~--~p~~l--~~l~~L~~L~ls~n~l~g--~~p-~~~~~l~ 150 (182)
++++.|++++|++.+..|..+.++++|++|++++|++.+. +|..+ ..+++|++|++++|++++ .++ ..+.+++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 5677777777777766667777777888888888777654 23344 677777777777777772 222 2234667
Q ss_pred CCCEEEcccCcCcCCCC-ccccCCccCCeEecC
Q 041146 151 ELRVFDTSANGLIGQIP-DRLSSLEKLEIIRLG 182 (182)
Q Consensus 151 ~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls 182 (182)
+|++|++++|++++..| ..+..+++|++|+++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 78888888888877654 345567777777764
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=4.9e-13 Score=105.11 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=76.2
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCC--Cc--cccCCCCCCcEeeccCCcCCCccch----hccCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQ--IP--DEIGRLQQLQDLNLTYNYLSGSIPS----NLSHC 149 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~--~p--~~l~~l~~L~~L~ls~n~l~g~~p~----~~~~l 149 (182)
++++.|++++|++.+..+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++|+++ .+|. .+.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 5788999999999877778888899999999999987642 22 22356777888888888776 4443 24566
Q ss_pred CCCCEEEcccCcCcCCCCccccCC---ccCCeEecC
Q 041146 150 RELRVFDTSANGLIGQIPDRLSSL---EKLEIIRLG 182 (182)
Q Consensus 150 ~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls 182 (182)
++|++|++++|++++..|+.+..+ ++|++|+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 778888888888877667666655 577777764
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.36 E-value=1.8e-12 Score=109.54 Aligned_cols=104 Identities=18% Similarity=0.328 Sum_probs=58.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCC--CCccccCCCCCCcEeeccCCcCCCccchh-ccCC-----
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHG--QIPDEIGRLQQLQDLNLTYNYLSGSIPSN-LSHC----- 149 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g--~~p~~l~~l~~L~~L~ls~n~l~g~~p~~-~~~l----- 149 (182)
++++.|++++|++++..|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|.. +..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 455566666666555555555555555555555555553 22234455555555555555555434432 2222
Q ss_pred -----------------CCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 150 -----------------RELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 150 -----------------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence 46666666666666 556666677777777764
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=7.2e-13 Score=104.14 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=79.5
Q ss_pred CcEEEEEecCCCCcccCCccc--cCCCCCCEEEeeCCCCCCCCc----cccCCCCCCcEeeccCCcCCCccchhccCCCC
Q 041146 78 ERVTALKLESKQLVGSIPPSV--GNLTCLKVINLQENNFHGQIP----DEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRE 151 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l--~~l~~L~~L~l~~n~l~g~~p----~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~ 151 (182)
.+++.|++++|++.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 358889999999888888877 788888888888888886555 33456888888888888888666677888888
Q ss_pred CCEEEcccCcCcCC--C--CccccCCccCCeEecC
Q 041146 152 LRVFDTSANGLIGQ--I--PDRLSSLEKLEIIRLG 182 (182)
Q Consensus 152 L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~Ls 182 (182)
|++|++++|++.+. + +..+..+++|++|+++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 88888888887642 1 1223567777777664
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=1.7e-12 Score=102.44 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=64.1
Q ss_pred CcEEEEEecCCCCcccCCcccc-CCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVG-NLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|.+.+..+..+. .+++|++|++++|.+++. |. ...+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence 3455566666655554444442 456666666666666532 22 234667777777777777 5566677777777777
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|+++ .+|..+..+++|+.|+++
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred CcCCccc-chhhHhhcCCCCCEEEcc
Confidence 7777777 456667777777777764
No 99
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.3e-12 Score=102.52 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=82.1
Q ss_pred cccceeeeCCC-----------CCcEEEEEecC-CCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeec
Q 041146 66 CNWVGVTCSLF-----------NERVTALKLES-KQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNL 133 (182)
Q Consensus 66 c~~~gv~c~~~-----------~~~l~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~l 133 (182)
|.|..+.|... ..+++.|++++ |.+++..+..|.++++|+.|+|++|++++..|..|.++++|++|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 66777777543 14589999996 9999887788999999999999999999888888999999999999
Q ss_pred cCCcCCCccchh-ccCCCCCCEEEcccCcCcC
Q 041146 134 TYNYLSGSIPSN-LSHCRELRVFDTSANGLIG 164 (182)
Q Consensus 134 s~n~l~g~~p~~-~~~l~~L~~L~L~~N~l~~ 164 (182)
++|+++ .+|.. +..++ |+.|++.+|.+..
T Consensus 88 ~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALE-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCS-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccc-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999 55554 44444 9999999999874
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.9e-12 Score=108.09 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=76.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|.+++.. ....+++|+.|++++|.+++ +|+.+..+++|+.|++++|.++ .+|..+..+++|+.+++
T Consensus 169 ~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred CcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence 44555555555555431 23357788888888888885 5556889999999999999999 68999999999999999
Q ss_pred ccCcCc-CCCCccccCCccCCeEe
Q 041146 158 SANGLI-GQIPDRLSSLEKLEIIR 180 (182)
Q Consensus 158 ~~N~l~-~~~p~~l~~l~~L~~L~ 180 (182)
++|.+. +.+|..+..+++|+.++
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEe
Confidence 999998 66777777777776554
No 101
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.35 E-value=1.3e-12 Score=103.46 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=66.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 45677777777777666667777777777777777777655556777777777777777777 77777777777777777
Q ss_pred ccCcCcCCCCcccc
Q 041146 158 SANGLIGQIPDRLS 171 (182)
Q Consensus 158 ~~N~l~~~~p~~l~ 171 (182)
++|++++..+..+.
T Consensus 272 ~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 272 HTNNITKVGVNDFC 285 (332)
T ss_dssp CSSCCCBCCTTSSS
T ss_pred CCCCCCccChhHcc
Confidence 77777755444443
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=2.3e-12 Score=101.57 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=86.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCcccc-CCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEI-GRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l-~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
++++.|++++|++++..+..+..+++|++|++++|.+++..|..+ ..+++|++|++++|+++ .+|. ...+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCEEE
Confidence 679999999999998777788899999999999999997666666 47899999999999998 5554 34589999999
Q ss_pred cccCcCcCCCCccccCCccCCeEecC
Q 041146 157 TSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+++|++++ +|+.+..+++|+.|+++
T Consensus 198 Ls~N~l~~-l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 198 LSSNKLAF-MGPEFQSAAGVTWISLR 222 (317)
T ss_dssp CCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred CCCCcCCc-chhhhcccCcccEEECc
Confidence 99999985 45668899999999875
No 103
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=2.7e-12 Score=113.49 Aligned_cols=105 Identities=27% Similarity=0.266 Sum_probs=93.7
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 56899999999999888888999999999999999999888888899999999999999998777888999999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..+..+..+++|+.|+++
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEE
T ss_pred CCCCCCccChhhhcCCCCCCEEECC
Confidence 9999987777788889999998874
No 104
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=2.2e-12 Score=109.94 Aligned_cols=130 Identities=10% Similarity=0.086 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCCcc----cceeeeCC------C----------CCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCC
Q 041146 53 LQIMSSWNDSIHFCN----WVGVTCSL------F----------NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQEN 112 (182)
Q Consensus 53 ~~~~~~w~~~~~~c~----~~gv~c~~------~----------~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 112 (182)
...+.+|....+||. |.++.|.. . -.+++.+++++|.+....+..+..+++|++|++++|
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n 85 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS
T ss_pred cccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC
Confidence 344677877655553 55544431 0 046789999999998655556788999999999999
Q ss_pred CCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 113 NFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 113 ~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
.+++..|..+..+++|++|++++|.+++..|..++++++|++|++++|.+++..+..|.++++|+.|+++
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 9998777789999999999999999997777778999999999999999996666667999999999985
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=2.1e-12 Score=109.86 Aligned_cols=107 Identities=22% Similarity=0.368 Sum_probs=58.9
Q ss_pred CCCCCCCCc-----cccee-eeCCCCCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEe
Q 041146 58 SWNDSIHFC-----NWVGV-TCSLFNERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDL 131 (182)
Q Consensus 58 ~w~~~~~~c-----~~~gv-~c~~~~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L 131 (182)
+|.....+| .|.++ .|.. .+++.|++++|++++ +|..+. ++|+.|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 354444556 57777 5643 456777777777764 555442 56666666666666 455 334556666
Q ss_pred eccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEec
Q 041146 132 NLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 132 ~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++++|++++ +|. +.+ +|++|++++|++++ +|. .+++|+.|++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 666666653 554 333 55555555555553 333 3344444443
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.30 E-value=7.7e-12 Score=99.28 Aligned_cols=99 Identities=26% Similarity=0.327 Sum_probs=63.3
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|.+++. +.+..+++|++|++++|.+++ + +.+..+++|++|++++|++++..|..++.+++|++|++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 4556666666665532 345666666666666666663 3 23566667777777777776666666677777777777
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..| +..+++|+.|+++
T Consensus 319 ~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 319 SQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp CSSSCCCCGG--GGGCTTCSEESSS
T ss_pred cCCccccccC--hhhhhccceeehh
Confidence 7777765544 6667777777653
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=1.1e-11 Score=96.77 Aligned_cols=96 Identities=27% Similarity=0.402 Sum_probs=48.0
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|.+++ + +.+..+++|+.|++++|.+++ + +.+..+++|++|++++|++++ + ..+..+++|+.|++
T Consensus 90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSL 163 (291)
T ss_dssp TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEc
Confidence 344444444444442 1 124445555555555555542 2 234455555555555555552 2 34555556666666
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++..| +..+++|+.|++
T Consensus 164 ~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 164 EDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEEC
T ss_pred cCCccccchh--hcCCCccCEEEC
Confidence 6666554332 555666666655
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=1.2e-11 Score=97.38 Aligned_cols=96 Identities=21% Similarity=0.370 Sum_probs=52.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++. +.+..+++|+.|++++|.+++ ++. +..+++|++|++++|+++ .++. +..+++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 85 TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSI 158 (308)
T ss_dssp CSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEc
Confidence 4455555555555432 235555555555555555552 332 555566666666666655 2332 555666666666
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++. +. +..+++|+.|++
T Consensus 159 ~~n~l~~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 159 GNAQVSDL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp CSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred cCCcCCCC-hh-hcCCCCCCEEEC
Confidence 66666542 22 556666666665
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=1.5e-11 Score=94.81 Aligned_cols=95 Identities=25% Similarity=0.336 Sum_probs=48.3
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|++++..+ +..+++|+.|++++|.+++ +|.. .. ++|++|++++|++++ ++ .+..+++|+.|++
T Consensus 63 ~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 456667777776664332 6666666666666666663 3321 12 445555555555542 22 2444455555555
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++. + .+..+++|+.|++
T Consensus 136 s~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 136 RNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp TTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred CCCcCCCC-h-HHccCCCCCEEEC
Confidence 55554432 2 3444444444443
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=1.6e-11 Score=95.80 Aligned_cols=96 Identities=30% Similarity=0.400 Sum_probs=45.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++..+ +..+++|++|++++|.+++ +| .+..+++|++|++++|++++ + +.+..+++|+.|++
T Consensus 68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence 345555555555543222 4455555555555555542 22 24455555555555555542 2 23444555555555
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++. +.+..+++|+.|++
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEEC
T ss_pred cCCcCCcc--hhhccCCCCCEEEc
Confidence 55555432 33445555555544
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=1.3e-11 Score=97.01 Aligned_cols=96 Identities=26% Similarity=0.421 Sum_probs=48.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++ ++. +..+++|+.|++++|.+++ ++. +..+++|++|++++|+++ .++. +..+++|+.|++
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKA 180 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEEC
Confidence 456666666666653 222 5555666666666665552 222 445555555555555555 2332 445555555555
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++..+ +..+++|+.|++
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L 202 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHL 202 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCCccCcChh--hcCCCCCCEEEc
Confidence 5555543221 444444444443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=1.7e-11 Score=94.41 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=83.1
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|+++ .++ .+..+++|+.|++++|.+++ +|+ +..+++|++|++++|+++ .+|... . ++|+.|++
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEc
Confidence 67899999999998 455 68899999999999999994 555 899999999999999999 566533 3 89999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++. +.+.++++|+.|+++
T Consensus 114 ~~N~l~~~--~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 114 DNNELRDT--DSLIHLKNLEILSIR 136 (263)
T ss_dssp CSSCCSBS--GGGTTCTTCCEEECT
T ss_pred cCCccCCC--hhhcCcccccEEECC
Confidence 99999964 358899999999985
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=1.1e-11 Score=99.06 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=89.5
Q ss_pred cccceeeeCCC---------CCcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCcc-ccCCCCCCcE-eecc
Q 041146 66 CNWVGVTCSLF---------NERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPD-EIGRLQQLQD-LNLT 134 (182)
Q Consensus 66 c~~~gv~c~~~---------~~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~-~l~~l~~L~~-L~ls 134 (182)
|.+..|.|... ..+++.|++++|+++...+..|.++++|++|++++|.+.+.+|. .|.+++++++ +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67777888532 14789999999999955556799999999999999998766765 4678888765 5667
Q ss_pred CCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEec
Q 041146 135 YNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 135 ~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
.|+++...|..+..+++|++|++++|++++..+..+....++..+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 78999555677899999999999999998665555555555555543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=4.4e-11 Score=102.38 Aligned_cols=95 Identities=25% Similarity=0.391 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
+++.|++++|++.+ + +.+..+++|+.|++++|.+++. +.+..+++|+.|++++|++.+..| +..+++|+.|+++
T Consensus 110 ~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 34444444444442 1 2244444455555555544422 334455555555555555553322 4555555555555
Q ss_pred cCcCcCCCCccccCCccCCeEec
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+|++++. +.+..+++|+.|++
T Consensus 184 ~N~i~~l--~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 184 KNHISDL--RALAGLKNLDVLEL 204 (605)
T ss_dssp SSCCCBC--GGGTTCTTCSEEEC
T ss_pred CCCCCCC--hHHccCCCCCEEEc
Confidence 5555532 23555555555554
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=9.2e-14 Score=102.60 Aligned_cols=100 Identities=25% Similarity=0.385 Sum_probs=75.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+| .+..+++|++|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEEC
Confidence 578888888888875 56 7788888888888888888 67776667778888888888888 455 5677777888888
Q ss_pred ccCcCcCCCC-ccccCCccCCeEecC
Q 041146 158 SANGLIGQIP-DRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p-~~l~~l~~L~~L~Ls 182 (182)
++|++++..+ ..+..+++|++|+++
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEec
Confidence 8888774322 356777777777764
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.23 E-value=3e-11 Score=95.82 Aligned_cols=99 Identities=23% Similarity=0.343 Sum_probs=81.8
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++.. . +..+++|++|++++|.+++ + +.+..+++|++|++++|+++ .++ .+..+++|+.|++
T Consensus 221 ~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DIS-VLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CCh-hhcCCCCCCEEEC
Confidence 57888888888887443 3 7888899999999998884 4 45788899999999999988 443 5788899999999
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++..|..+.++++|+.|+++
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred cCCcCCCcChhHhhccccCCEEEcc
Confidence 9999988888888899999999874
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=5e-11 Score=98.74 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=70.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++. | ++.+++|++|++++|.+++ +| +..+++|++|++++|++++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 5678888888887753 3 7778888888888888875 33 7778888888888888884 54 777888888888
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++. + ++++++|++|+++
T Consensus 135 ~~N~l~~l-~--l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 135 ARNTLTEI-D--VSHNTQLTELDCH 156 (457)
T ss_dssp TTSCCSCC-C--CTTCTTCCEEECT
T ss_pred CCCcccee-c--cccCCcCCEEECC
Confidence 88888763 3 6777888888764
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=4.9e-11 Score=102.10 Aligned_cols=97 Identities=27% Similarity=0.403 Sum_probs=60.6
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
.+++.|++++|.+.+ + +.+..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++ + ..+..+++|+.|++
T Consensus 87 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSL 160 (605)
T ss_dssp TTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEEC
T ss_pred CCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEEC
Confidence 455666666666553 2 245666666666666666663 3 235666667777777776663 3 45667777777777
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|.+++..| +..+++|+.|+|+
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cCCcCCCchh--hccCCCCCEEECc
Confidence 7777765544 6677777777664
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.21 E-value=4.9e-11 Score=98.62 Aligned_cols=96 Identities=27% Similarity=0.383 Sum_probs=52.9
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++.+..+ +..+++|+.|++++|.+++..| +..+++|++|++++|++++. ..+.++++|+.|++
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 344455555555443222 4455555555555555553332 44555566666666655532 34556666666666
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|++++..| +..+++|+.|++
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCccCccch--hhcCCCCCEEec
Confidence 6666665544 566666666665
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.18 E-value=1.4e-12 Score=103.11 Aligned_cols=104 Identities=17% Similarity=0.222 Sum_probs=50.4
Q ss_pred CcEEEEEecCCCCccc-CCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCC-cCCCc-cchhccCCCCCCE
Q 041146 78 ERVTALKLESKQLVGS-IPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYN-YLSGS-IPSNLSHCRELRV 154 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n-~l~g~-~p~~~~~l~~L~~ 154 (182)
.+++.|++++|.+.+. ++..+..+++|++|++++|.+++..|..+..+++|++|++++| .+++. ++..+.++++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 3455555555554433 4444455555555555555555444444555555555555555 34431 3444444555555
Q ss_pred EEcccC-cCcCC-CCccccCCc-cCCeEec
Q 041146 155 FDTSAN-GLIGQ-IPDRLSSLE-KLEIIRL 181 (182)
Q Consensus 155 L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L 181 (182)
|++++| .+++. ++..+..++ +|+.|++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 555555 44432 233344444 4554444
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=9.9e-14 Score=102.42 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=83.7
Q ss_pred cEEEEEecCCCCcccCCc------cccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCC
Q 041146 79 RVTALKLESKQLVGSIPP------SVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCREL 152 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~------~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L 152 (182)
+++.++++.+.+.|..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 445555566666655555 89999999999999999995 77 7889999999999999999 889888888999
Q ss_pred CEEEcccCcCcCCCCccccCCccCCeEecC
Q 041146 153 RVFDTSANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 153 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|++++|++++ +| .+..+++|++|+++
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 999999999996 45 68889999999874
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=1.1e-10 Score=96.44 Aligned_cols=96 Identities=27% Similarity=0.397 Sum_probs=50.2
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
+++.|++++|++.+..+ +..+++|+.|++++|.+++. ++ +..+++|++|++++|++++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 44445555554443222 44555555555555555532 22 4455555555555555554333 4555666666666
Q ss_pred cCcCcCCCCccccCCccCCeEecC
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|++++. +.+.++++|+.|+++
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECC
T ss_pred CCccCCc--hhhccCCCCCEEeCC
Confidence 6666543 345666666666653
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.17 E-value=4.3e-12 Score=100.22 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=89.7
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCC-CccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQ-IPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFD 156 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~-~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~ 156 (182)
.+++.+++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|++++..|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5688899999998866554 66799999999999998865 788889999999999999999988888999999999999
Q ss_pred cccC-cCcCC-CCccccCCccCCeEecC
Q 041146 157 TSAN-GLIGQ-IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 157 L~~N-~l~~~-~p~~l~~l~~L~~L~Ls 182 (182)
+++| .+++. ++..+.++++|+.|+++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 9999 67753 66678889999999874
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=1.2e-10 Score=98.92 Aligned_cols=71 Identities=25% Similarity=0.468 Sum_probs=37.1
Q ss_pred CCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCC-------CEEEcccCcCcCCCCccccCCcc
Q 041146 103 CLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCREL-------RVFDTSANGLIGQIPDRLSSLEK 175 (182)
Q Consensus 103 ~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~ 175 (182)
+|+.|++++|.+++ +|. +. ++|++|++++|+++ .+|. +.. +| +.|++++|+++ .+|..+.++++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 34444444444442 333 32 45555555555555 4554 333 45 66666666666 45666666777
Q ss_pred CCeEecC
Q 041146 176 LEIIRLG 182 (182)
Q Consensus 176 L~~L~Ls 182 (182)
|+.|+++
T Consensus 232 L~~L~L~ 238 (571)
T 3cvr_A 232 TCTIILE 238 (571)
T ss_dssp TEEEECC
T ss_pred CCEEEee
Confidence 7777664
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.11 E-value=3.7e-10 Score=93.48 Aligned_cols=94 Identities=24% Similarity=0.296 Sum_probs=61.2
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++. + ++++++|++|++++|.+++ +| +..+++|++|++++|++++ ++ ++++++|++|++
T Consensus 85 ~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l 155 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDC 155 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEEC
Confidence 5667777777776653 2 6667777777777777764 33 6667777777777777774 33 566677777777
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
++|+..+.+ .+..+++|+.|+++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCCCccccc--ccccCCcCCEEECC
Confidence 777555554 25666677776653
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=9.5e-12 Score=100.41 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred CcEEEEEecCCCCcc-----cCCccccCCCCCCEEEeeCCCCC----CCCccccCCCCCCcEeeccCCcCCCc----cch
Q 041146 78 ERVTALKLESKQLVG-----SIPPSVGNLTCLKVINLQENNFH----GQIPDEIGRLQQLQDLNLTYNYLSGS----IPS 144 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~-----~~p~~l~~l~~L~~L~l~~n~l~----g~~p~~l~~l~~L~~L~ls~n~l~g~----~p~ 144 (182)
++++.|++++|++.. ..+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|++++. +|.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 456777777777662 23335667777777777777774 45666667777777777777777654 455
Q ss_pred hc--cCCCCCCEEEcccCcCcC----CCCccc-cCCccCCeEecC
Q 041146 145 NL--SHCRELRVFDTSANGLIG----QIPDRL-SSLEKLEIIRLG 182 (182)
Q Consensus 145 ~~--~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~Ls 182 (182)
.+ +.+++|+.|++++|.+++ .+|..+ .++++|+.|+++
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 55 336777777777777776 366655 456777777763
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.08 E-value=6.9e-10 Score=91.81 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=45.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEc
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDT 157 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L 157 (182)
++++.|++++|++++ +| +++++++|++|++++|.+++ +|..+ ++|++|++++|++++ +| .++++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356677777776664 55 46777777777777777663 44322 355566666665553 44 3555555555555
Q ss_pred ccCcCc
Q 041146 158 SANGLI 163 (182)
Q Consensus 158 ~~N~l~ 163 (182)
++|+++
T Consensus 203 ~~N~l~ 208 (454)
T 1jl5_A 203 DNNSLK 208 (454)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555444
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.06 E-value=2e-11 Score=97.90 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=69.3
Q ss_pred cEEEEEecCCCCcccCCccccCC-----CCCCEEEeeCCCCCCCCccccC----CC-CCCcEeeccCCcCCCccchhc--
Q 041146 79 RVTALKLESKQLVGSIPPSVGNL-----TCLKVINLQENNFHGQIPDEIG----RL-QQLQDLNLTYNYLSGSIPSNL-- 146 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~g~~p~~l~----~l-~~L~~L~ls~n~l~g~~p~~~-- 146 (182)
+++.|++++|++.+..+..+..+ ++|++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 67888888888876666655554 7788888888888766555333 33 678888888888775444333
Q ss_pred --cC-CCCCCEEEcccCcCcCCCC----ccccCCc-cCCeEecC
Q 041146 147 --SH-CRELRVFDTSANGLIGQIP----DRLSSLE-KLEIIRLG 182 (182)
Q Consensus 147 --~~-l~~L~~L~L~~N~l~~~~p----~~l~~l~-~L~~L~Ls 182 (182)
.. .++|++|++++|.++...+ ..+..++ +|+.|+++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 23 3578888888888875333 3334454 78888764
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.05 E-value=2.3e-11 Score=98.11 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=74.1
Q ss_pred CcEEEEEecCCCCc-ccCC---ccccCCCCCCEEEeeCCCCC--C---CCccccCCCCCCcEeeccCCcCC----Cccch
Q 041146 78 ERVTALKLESKQLV-GSIP---PSVGNLTCLKVINLQENNFH--G---QIPDEIGRLQQLQDLNLTYNYLS----GSIPS 144 (182)
Q Consensus 78 ~~l~~L~l~~n~l~-~~~p---~~l~~l~~L~~L~l~~n~l~--g---~~p~~l~~l~~L~~L~ls~n~l~----g~~p~ 144 (182)
++++.|++++|++. +.++ ..+..+++|+.|++++|.++ | .+|..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46777777777776 3333 34566778888888888776 2 23336677788888888888875 46777
Q ss_pred hccCCCCCCEEEcccCcCcCC----CCccc--cCCccCCeEecC
Q 041146 145 NLSHCRELRVFDTSANGLIGQ----IPDRL--SSLEKLEIIRLG 182 (182)
Q Consensus 145 ~~~~l~~L~~L~L~~N~l~~~----~p~~l--~~l~~L~~L~Ls 182 (182)
.+..+++|++|++++|.+++. +|..+ +++++|+.|+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 778888888888888888754 45555 337788888764
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.04 E-value=6.7e-10 Score=88.63 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=82.3
Q ss_pred EEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCc-cccCCCCCCcEeeccCCcCCCccch-hccCCCCCCE-EEc
Q 041146 81 TALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIP-DEIGRLQQLQDLNLTYNYLSGSIPS-NLSHCRELRV-FDT 157 (182)
Q Consensus 81 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p-~~l~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~-L~L 157 (182)
+.++.++++++ .+|..+ .+++++|++++|+++ .+| ..|.++++|++|++++|++.+.+|. .+.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 35789999998 788766 368999999999999 555 4689999999999999999867775 5678888765 667
Q ss_pred ccCcCcCCCCccccCCccCCeEecC
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+.|++++..|..|..+++|++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEE
T ss_pred cCCcccccCchhhhhcccccccccc
Confidence 7899998888889999999999873
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=6.4e-10 Score=92.01 Aligned_cols=73 Identities=22% Similarity=0.414 Sum_probs=46.2
Q ss_pred CCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcC--CCCccccCC------
Q 041146 102 TCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIG--QIPDRLSSL------ 173 (182)
Q Consensus 102 ~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l------ 173 (182)
++|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.++
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 467777777777774 5543 467778888888777 5666 46778888888888887 677777766
Q ss_pred -------ccCCeEecC
Q 041146 174 -------EKLEIIRLG 182 (182)
Q Consensus 174 -------~~L~~L~Ls 182 (182)
++|+.|+++
T Consensus 389 ~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVE 404 (454)
T ss_dssp ----------------
T ss_pred cccccccCcCCEEECC
Confidence 677777764
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.03 E-value=2.3e-10 Score=98.23 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=43.7
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTS 158 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~ 158 (182)
+++.|++++|+++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECC
Confidence 4445555555544 2333 3445555555555554 3443 3445555555555555 3443 34455556666
Q ss_pred cCcCcCCCCccccCCccCCeEecC
Q 041146 159 ANGLIGQIPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 159 ~N~l~~~~p~~l~~l~~L~~L~Ls 182 (182)
+|++++ +|.. +++|++|+++
T Consensus 130 ~N~l~~-lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 130 GNQLTS-LPVL---PPGLQELSVS 149 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECC
T ss_pred CCCCCc-CCCC---CCCCCEEECc
Confidence 665553 3332 2566666653
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.01 E-value=2.2e-09 Score=92.16 Aligned_cols=72 Identities=24% Similarity=0.323 Sum_probs=58.3
Q ss_pred CCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCCccccCCccCCeEec
Q 041146 102 TCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 102 ~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 678888888888873 56 45578888888888888 6776 5678899999999988 77888889999999887
Q ss_pred C
Q 041146 182 G 182 (182)
Q Consensus 182 s 182 (182)
+
T Consensus 292 ~ 292 (622)
T 3g06_A 292 E 292 (622)
T ss_dssp C
T ss_pred c
Confidence 4
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=9.5e-11 Score=93.92 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=85.9
Q ss_pred CcEEEEEecCCCCcccCC----ccccCCC-CCCEEEeeCCCCCCCCccccCCC-----CCCcEeeccCCcCCCccchh--
Q 041146 78 ERVTALKLESKQLVGSIP----PSVGNLT-CLKVINLQENNFHGQIPDEIGRL-----QQLQDLNLTYNYLSGSIPSN-- 145 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~g~~p~~l~~l-----~~L~~L~ls~n~l~g~~p~~-- 145 (182)
.+++.|++++|.+.+..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|++|++++|++++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 569999999999997666 6678888 89999999999998777777664 89999999999999766654
Q ss_pred --ccCC-CCCCEEEcccCcCcCCCCcccc----C-CccCCeEecC
Q 041146 146 --LSHC-RELRVFDTSANGLIGQIPDRLS----S-LEKLEIIRLG 182 (182)
Q Consensus 146 --~~~l-~~L~~L~L~~N~l~~~~p~~l~----~-l~~L~~L~Ls 182 (182)
+..+ ++|++|++++|++++..+..+. . .++|++|+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 3444 8999999999999876655443 3 2589999985
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.86 E-value=8.8e-11 Score=96.37 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCCEEEeeCCCCCCC----CccccCCCCCCcEeeccCCcCCCccchhccC-----CCCCCEEEcccCcCcC----CCCcc
Q 041146 103 CLKVINLQENNFHGQ----IPDEIGRLQQLQDLNLTYNYLSGSIPSNLSH-----CRELRVFDTSANGLIG----QIPDR 169 (182)
Q Consensus 103 ~L~~L~l~~n~l~g~----~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~-----l~~L~~L~L~~N~l~~----~~p~~ 169 (182)
+|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 444444444444432 2333344455556666555555333322221 4456666666666554 44555
Q ss_pred ccCCccCCeEec
Q 041146 170 LSSLEKLEIIRL 181 (182)
Q Consensus 170 l~~l~~L~~L~L 181 (182)
+..+++|++|++
T Consensus 394 l~~~~~L~~L~l 405 (461)
T 1z7x_W 394 LLANHSLRELDL 405 (461)
T ss_dssp HHHCCCCCEEEC
T ss_pred HHhCCCccEEEC
Confidence 555566666655
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.82 E-value=3.2e-10 Score=93.04 Aligned_cols=105 Identities=23% Similarity=0.247 Sum_probs=69.6
Q ss_pred CcEEEEEecCCCCcc----cCCccccCCCCCCEEEeeCCCCCCCCcccc-CCCC----CCcEeeccCCcCCC----ccch
Q 041146 78 ERVTALKLESKQLVG----SIPPSVGNLTCLKVINLQENNFHGQIPDEI-GRLQ----QLQDLNLTYNYLSG----SIPS 144 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l-~~l~----~L~~L~ls~n~l~g----~~p~ 144 (182)
++++.|++++|++.+ .++..+..+++|++|++++|.++...+..+ ..++ +|++|++++|+++. .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 567788888887764 345556677888888888887764333332 2333 58888888888773 4577
Q ss_pred hccCCCCCCEEEcccCcCcCCCCcccc-----CCccCCeEecC
Q 041146 145 NLSHCRELRVFDTSANGLIGQIPDRLS-----SLEKLEIIRLG 182 (182)
Q Consensus 145 ~~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls 182 (182)
.+..+++|++|++++|.+++..+..+. ..++|+.|+++
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 777888888888888887654333222 24567777764
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.78 E-value=3.9e-09 Score=81.57 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=64.7
Q ss_pred cCCCCCCEEEeeCCCCCC--CCccccCCCCCCcEeeccCCcCCCccchhccCCC--CCCEEEcccCcCcCCCCc------
Q 041146 99 GNLTCLKVINLQENNFHG--QIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCR--ELRVFDTSANGLIGQIPD------ 168 (182)
Q Consensus 99 ~~l~~L~~L~l~~n~l~g--~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~--~L~~L~L~~N~l~~~~p~------ 168 (182)
.++++|+.|+|++|.+++ .+|..+..+++|+.|++++|++++. ..+..++ +|+.|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 357899999999999997 4556677899999999999999953 3344444 899999999999987762
Q ss_pred -cccCCccCCeEe
Q 041146 169 -RLSSLEKLEIIR 180 (182)
Q Consensus 169 -~l~~l~~L~~L~ 180 (182)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367888998886
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=2.6e-08 Score=78.69 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=87.3
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCc-EeeccCCcCCCcc-chhccCCCCCCEE
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQ-DLNLTYNYLSGSI-PSNLSHCRELRVF 155 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~-~L~ls~n~l~g~~-p~~~~~l~~L~~L 155 (182)
.+++.+++++|+++...+..|.++.+|+.+++.+| ++..-+..|.++++|+ .++++. +++ .+ +..|.++++|+.+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 57899999999999666678999999999999998 7744456789999999 999998 677 55 4789999999999
Q ss_pred EcccCcCcCCCCccccCCccCCeEec
Q 041146 156 DTSANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 156 ~L~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
+++.|+++..-+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999777778999999999864
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=3.5e-09 Score=85.55 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=56.2
Q ss_pred cEEEEEecCCCCcccCCccc-----cCCCCCCEEEeeCCCCCC----CCccccCCCCCCcEeeccCCcCCCc----cchh
Q 041146 79 RVTALKLESKQLVGSIPPSV-----GNLTCLKVINLQENNFHG----QIPDEIGRLQQLQDLNLTYNYLSGS----IPSN 145 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~g----~~p~~l~~l~~L~~L~ls~n~l~g~----~p~~ 145 (182)
+++.|++++|++.......+ ...++|+.|++++|.++. .++..+...++|++|++++|.++.. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 45555555555543222222 234566666666666643 1233334566677777777766532 2344
Q ss_pred ccCCCCCCEEEcccCcCcCC----CCccccCCccCCeEecC
Q 041146 146 LSHCRELRVFDTSANGLIGQ----IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 146 ~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls 182 (182)
+...+.|+.|++++|.++.. ++..+...++|+.|+++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 55556677777777766532 22334445667776664
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=5.7e-09 Score=84.28 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=79.1
Q ss_pred CcEEEEEecCCCCcccCCcccc-CCCCCCEEEeeCCCCCCCCcccc-----CCCCCCcEeeccCCcCCC----ccchhcc
Q 041146 78 ERVTALKLESKQLVGSIPPSVG-NLTCLKVINLQENNFHGQIPDEI-----GRLQQLQDLNLTYNYLSG----SIPSNLS 147 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~~p~~l-----~~l~~L~~L~ls~n~l~g----~~p~~~~ 147 (182)
.+++.|++++|.+.......+. .+.+|+.|++++|.++......+ ...++|++|++++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5899999999998754333332 35689999999999975433333 346789999999999874 2445567
Q ss_pred CCCCCCEEEcccCcCcCC----CCccccCCccCCeEecC
Q 041146 148 HCRELRVFDTSANGLIGQ----IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 148 ~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls 182 (182)
..++|++|++++|.++.. ++..+...++|+.|+++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 889999999999998743 34556777899999885
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=7.5e-08 Score=74.35 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=63.2
Q ss_pred CcEEEEEecCCCCcc--cCCccccCCCCCCEEEeeCCCCCCCCccccCCCC--CCcEeeccCCcCCCccch-------hc
Q 041146 78 ERVTALKLESKQLVG--SIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQ--QLQDLNLTYNYLSGSIPS-------NL 146 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~--~L~~L~ls~n~l~g~~p~-------~~ 146 (182)
++++.|++++|++++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 689999999999997 4566677899999999999999964 2344444 899999999999987762 36
Q ss_pred cCCCCCCEEE
Q 041146 147 SHCRELRVFD 156 (182)
Q Consensus 147 ~~l~~L~~L~ 156 (182)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 7789999886
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=2.7e-08 Score=72.57 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=69.6
Q ss_pred CcEEEEEecCC-CCccc----CCccccCCCCCCEEEeeCCCCCCC----CccccCCCCCCcEeeccCCcCCCc----cch
Q 041146 78 ERVTALKLESK-QLVGS----IPPSVGNLTCLKVINLQENNFHGQ----IPDEIGRLQQLQDLNLTYNYLSGS----IPS 144 (182)
Q Consensus 78 ~~l~~L~l~~n-~l~~~----~p~~l~~l~~L~~L~l~~n~l~g~----~p~~l~~l~~L~~L~ls~n~l~g~----~p~ 144 (182)
+.++.|++++| .+... +...+...++|++|++++|.+... +...+...+.|++|++++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 66788888888 77632 334455667888888888887632 223344556788888888887743 345
Q ss_pred hccCCCCCCEEEc--ccCcCcCC----CCccccCCccCCeEecC
Q 041146 145 NLSHCRELRVFDT--SANGLIGQ----IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 145 ~~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~Ls 182 (182)
.+...+.|++|++ ++|.+... +...+...++|+.|+++
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 5666777888888 77877643 22344455677777764
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.38 E-value=5.1e-08 Score=82.29 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.3
Q ss_pred CccccCCccCCeEec
Q 041146 167 PDRLSSLEKLEIIRL 181 (182)
Q Consensus 167 p~~l~~l~~L~~L~L 181 (182)
|..+..+++|+.|++
T Consensus 286 ~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 286 PILFPFAAQIRKLDL 300 (592)
T ss_dssp GGGGGGGGGCCEEEE
T ss_pred HHHHhhcCCCcEEec
Confidence 333444555555554
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=3.8e-06 Score=66.11 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCCcEeeccCCcCCCccch-hccCCCCCCEEEcccCcCcCCCCccccCCccCC
Q 041146 126 QQLQDLNLTYNYLSGSIPS-NLSHCRELRVFDTSANGLIGQIPDRLSSLEKLE 177 (182)
Q Consensus 126 ~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 177 (182)
++|+.+++++|+++ .+|+ .|.++++|+.+++.+| ++..-+..|.++++|+
T Consensus 226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 34444444444444 3332 3444444444444444 3323333344444444
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.22 E-value=6.6e-07 Score=75.43 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=53.6
Q ss_pred CcEEEEEecCCCCc----ccCCccccCCCCCCEEEeeCCCCCCCCcccc---------------------------CCCC
Q 041146 78 ERVTALKLESKQLV----GSIPPSVGNLTCLKVINLQENNFHGQIPDEI---------------------------GRLQ 126 (182)
Q Consensus 78 ~~l~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l---------------------------~~l~ 126 (182)
++++.|++++|+++ +.++..+.++++|+.|++++|.+.+ +|..+ ..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 45666666666654 2233334455666666666655442 23333 3333
Q ss_pred CCcEeeccCCcCCCccchhccCCCCCCEEEcccCcCcCCCC-ccccCCccCCeEec
Q 041146 127 QLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSANGLIGQIP-DRLSSLEKLEIIRL 181 (182)
Q Consensus 127 ~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L 181 (182)
+|+.++++++... .+|..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus 271 ~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 271 KLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp TCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred cccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 4444444433222 455556666777777777777654322 23456666666654
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.18 E-value=2e-07 Score=78.54 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=62.8
Q ss_pred CcEEEEEecCCCCcccCCcccc-CCCCCCEEEeeCC-CCCCC-CccccCCCCCCcEeeccCCcCCCccchhc----cCCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVG-NLTCLKVINLQEN-NFHGQ-IPDEIGRLQQLQDLNLTYNYLSGSIPSNL----SHCR 150 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n-~l~g~-~p~~l~~l~~L~~L~ls~n~l~g~~p~~~----~~l~ 150 (182)
++++.|+++++.+++..+..+. .+++|+.|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5678888888887766555554 5778888888877 44422 33334467778888888777665433332 2556
Q ss_pred CCCEEEcccCc--CcCC-CCccccCCccCCeEec
Q 041146 151 ELRVFDTSANG--LIGQ-IPDRLSSLEKLEIIRL 181 (182)
Q Consensus 151 ~L~~L~L~~N~--l~~~-~p~~l~~l~~L~~L~L 181 (182)
+|+.|++++|. ++.. ++..+.++++|+.|++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 77777777775 2110 1111234466666665
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.17 E-value=9.7e-08 Score=80.50 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=49.6
Q ss_pred ccCCCCCCEEEeeCCCCCCCCccccCC-CCCCcEeeccCCcCCCccchhc-cCCCCCCEEEcccCcCcCCCCc-cccCCc
Q 041146 98 VGNLTCLKVINLQENNFHGQIPDEIGR-LQQLQDLNLTYNYLSGSIPSNL-SHCRELRVFDTSANGLIGQIPD-RLSSLE 174 (182)
Q Consensus 98 l~~l~~L~~L~l~~n~l~g~~p~~l~~-l~~L~~L~ls~n~l~g~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~l~~l~ 174 (182)
+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455666666654 444333333333 6677777777777765444444 5577788888888877543332 334567
Q ss_pred cCCeEec
Q 041146 175 KLEIIRL 181 (182)
Q Consensus 175 ~L~~L~L 181 (182)
+|+.|++
T Consensus 507 ~L~~L~l 513 (594)
T 2p1m_B 507 TMRSLWM 513 (594)
T ss_dssp GSSEEEE
T ss_pred CCCEEee
Confidence 7777776
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.5e-06 Score=61.75 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=66.4
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCC-CCCCCccccCCC----CCCcEeeccCCc-CCCccchhccCCCC
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENN-FHGQIPDEIGRL----QQLQDLNLTYNY-LSGSIPSNLSHCRE 151 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~g~~p~~l~~l----~~L~~L~ls~n~-l~g~~p~~~~~l~~ 151 (182)
.+++.||++++.++..--..+..+++|+.|++++|. ++..--..+..+ ++|++|++++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 579999999999886655667899999999999995 664333445554 479999999985 77544456788999
Q ss_pred CCEEEcccCc
Q 041146 152 LRVFDTSANG 161 (182)
Q Consensus 152 L~~L~L~~N~ 161 (182)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.1e-06 Score=61.26 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCc-CCCccchhccCC----CCCCEEEcccCc-CcCCCCccccCCcc
Q 041146 102 TCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNY-LSGSIPSNLSHC----RELRVFDTSANG-LIGQIPDRLSSLEK 175 (182)
Q Consensus 102 ~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~-l~g~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~~ 175 (182)
..|+.||++++.++..--..+..+++|+.|+++++. ++..--..+..+ ++|++|+++++. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999886555667899999999999995 664433445554 479999999974 76443345778899
Q ss_pred CCeEecC
Q 041146 176 LEIIRLG 182 (182)
Q Consensus 176 L~~L~Ls 182 (182)
|+.|+++
T Consensus 141 L~~L~L~ 147 (176)
T 3e4g_A 141 LKYLFLS 147 (176)
T ss_dssp CCEEEEE
T ss_pred CCEEECC
Confidence 9999874
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=1.6e-06 Score=63.03 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=67.9
Q ss_pred CcEEEEEecCCCCccc----CCccccCCCCCCEEEeeCCCCCCC----CccccCCCCCCcEeec--cCCcCCCc----cc
Q 041146 78 ERVTALKLESKQLVGS----IPPSVGNLTCLKVINLQENNFHGQ----IPDEIGRLQQLQDLNL--TYNYLSGS----IP 143 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~g~----~p~~l~~l~~L~~L~l--s~n~l~g~----~p 143 (182)
.++++|++++|++... +...+...++|++|++++|.+... +...+...+.|++|++ ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 6799999999998743 334455668899999999999853 3456677789999999 88998853 33
Q ss_pred hhccCCCCCCEEEcccCcCc
Q 041146 144 SNLSHCRELRVFDTSANGLI 163 (182)
Q Consensus 144 ~~~~~l~~L~~L~L~~N~l~ 163 (182)
+.+...+.|+.|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 45566789999999999885
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=2e-06 Score=69.12 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=29.5
Q ss_pred CCCCcEeeccCCcCCCccchhcc---CCCCCCEEEcccCcCcCC----CCccccCCccCCeEec
Q 041146 125 LQQLQDLNLTYNYLSGSIPSNLS---HCRELRVFDTSANGLIGQ----IPDRLSSLEKLEIIRL 181 (182)
Q Consensus 125 l~~L~~L~ls~n~l~g~~p~~~~---~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L 181 (182)
+++|++|++.+|.+....+..+. .+++|++|+++.|.+++. ++..+..+++|+.|++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 45666666666655533322222 355666666666666542 2222234556666665
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.61 E-value=0.00023 Score=57.75 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=38.0
Q ss_pred CccccCCCCCCEEEeeCCCCC-----CCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEEcccCcCcCCCCc
Q 041146 95 PPSVGNLTCLKVINLQENNFH-----GQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFDTSANGLIGQIPD 168 (182)
Q Consensus 95 p~~l~~l~~L~~L~l~~n~l~-----g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~~~~p~ 168 (182)
...|.++.+|+.+++.+|.+. ..-+..|.++++|+.+++.. .+. .++ ..|.++++|+.+++..| ++..-+.
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 445566666666666655443 12223455555555555552 233 232 33444455555555332 3322333
Q ss_pred cccCCccCCeEe
Q 041146 169 RLSSLEKLEIIR 180 (182)
Q Consensus 169 ~l~~l~~L~~L~ 180 (182)
.|.++ +|+.++
T Consensus 341 aF~~~-~L~~l~ 351 (401)
T 4fdw_A 341 AFNNT-GIKEVK 351 (401)
T ss_dssp SSSSS-CCCEEE
T ss_pred hCCCC-CCCEEE
Confidence 44444 444443
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.48 E-value=0.00046 Score=56.01 Aligned_cols=100 Identities=9% Similarity=0.107 Sum_probs=76.4
Q ss_pred CcEEEEEecCCCCc-----ccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCcc-chhccCCCC
Q 041146 78 ERVTALKLESKQLV-----GSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSI-PSNLSHCRE 151 (182)
Q Consensus 78 ~~l~~L~l~~n~l~-----~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~-p~~~~~l~~ 151 (182)
.+++.+++.++.+. ..-+..|.++.+|+.+++. +.++..-...|.++++|+.+.+..| ++ .+ +..|.++ +
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~ 346 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-G 346 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-C
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-C
Confidence 57888888887664 3445678999999999999 4576444557889999999999765 66 44 4678888 9
Q ss_pred CCEEEcccCcCcCCCCccccCCc-cCCeEec
Q 041146 152 LRVFDTSANGLIGQIPDRLSSLE-KLEIIRL 181 (182)
Q Consensus 152 L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L 181 (182)
|+.+++.+|.+....+..|..++ +++.+++
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 99999999988766666777774 6666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.47 E-value=6.3e-05 Score=60.37 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=66.5
Q ss_pred CcEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccC--CCCCCcEeeccC--CcCCCc-----cchhc--
Q 041146 78 ERVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIG--RLQQLQDLNLTY--NYLSGS-----IPSNL-- 146 (182)
Q Consensus 78 ~~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~--~l~~L~~L~ls~--n~l~g~-----~p~~~-- 146 (182)
++++.|+++++.-. .++. + .+++|+.|++..+.+.......+. .+++|+.|+++. |...|. +...+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 67899999887311 2333 3 378899999998887644333333 688999999863 222211 11122
Q ss_pred cCCCCCCEEEcccCcCcCCCCccc---cCCccCCeEecC
Q 041146 147 SHCRELRVFDTSANGLIGQIPDRL---SSLEKLEIIRLG 182 (182)
Q Consensus 147 ~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~Ls 182 (182)
..+++|++|++.+|.+....+..+ ..+++|+.|+++
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 357899999999998875433333 357899999885
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00068 Score=46.29 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=42.3
Q ss_pred EEEecCCCCc-ccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCC
Q 041146 82 ALKLESKQLV-GSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLS 139 (182)
Q Consensus 82 ~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~ 139 (182)
.++.++++++ ..+|..+. .+|+.|+|++|+++..-+..|..+++|++|++++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6788888876 35665433 56899999999999444445678889999999999765
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.0012 Score=45.05 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=44.4
Q ss_pred CEEEeeCCCCC-CCCccccCCCCCCcEeeccCCcCCCccch-hccCCCCCCEEEcccCcCc
Q 041146 105 KVINLQENNFH-GQIPDEIGRLQQLQDLNLTYNYLSGSIPS-NLSHCRELRVFDTSANGLI 163 (182)
Q Consensus 105 ~~L~l~~n~l~-g~~p~~l~~l~~L~~L~ls~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~ 163 (182)
..++-+++.++ ..+|..+. +++++|+|++|+|+ .+|. .+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 47788888886 46676443 46999999999999 6664 5778999999999999773
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.67 E-value=0.00039 Score=51.03 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=63.6
Q ss_pred CcEEEEEecCC-CCccc----CCccccCCCCCCEEEeeCCCCCCC----CccccCCCCCCcEeeccCCcCCCc----cch
Q 041146 78 ERVTALKLESK-QLVGS----IPPSVGNLTCLKVINLQENNFHGQ----IPDEIGRLQQLQDLNLTYNYLSGS----IPS 144 (182)
Q Consensus 78 ~~l~~L~l~~n-~l~~~----~p~~l~~l~~L~~L~l~~n~l~g~----~p~~l~~l~~L~~L~ls~n~l~g~----~p~ 144 (182)
..++.|+++++ ++... +-..+..=+.|+.|+|++|.+... +-+.+..=+.|++|+++.|+|+.. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 67888888875 66421 233455557788888888888632 222333446788888888888743 223
Q ss_pred hccCCCCCCEEEcccCc---CcC----CCCccccCCccCCeEec
Q 041146 145 NLSHCRELRVFDTSANG---LIG----QIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 145 ~~~~l~~L~~L~L~~N~---l~~----~~p~~l~~l~~L~~L~L 181 (182)
.+..-+.|+.|+|++|. +.. .+.+.+..-++|+.|++
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 45555678888887553 221 12233444456666665
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.54 E-value=0.014 Score=46.67 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=44.4
Q ss_pred cccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEEcccCcCcCCCCccccCCcc
Q 041146 97 SVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFDTSANGLIGQIPDRLSSLEK 175 (182)
Q Consensus 97 ~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 175 (182)
.|.++..|+.+.+. +.++..-...|.++.+|+.+++..+ ++ .+. ..|.++.+|+.+.+..+ ++..-...|.++++
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 45556666666664 2333222234566667777776643 33 333 45666677777766543 44333445666666
Q ss_pred CCeEec
Q 041146 176 LEIIRL 181 (182)
Q Consensus 176 L~~L~L 181 (182)
|+.+++
T Consensus 359 L~~i~~ 364 (394)
T 4gt6_A 359 LNNIEY 364 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.54 E-value=0.0096 Score=47.26 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=41.5
Q ss_pred ccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEEcccCcCcCCCCccccCCc
Q 041146 96 PSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFDTSANGLIGQIPDRLSSLE 174 (182)
Q Consensus 96 ~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 174 (182)
..+.++.+|+.+.+..+ +...-...+.++++|+.+.+..+.+. .++ ..+.++.+|+.+++..+ ++..-...|.+++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 34445555555555432 33122234555666666666665555 343 34556666666666433 3323334455555
Q ss_pred cCCeEe
Q 041146 175 KLEIIR 180 (182)
Q Consensus 175 ~L~~L~ 180 (182)
+|+.+.
T Consensus 334 ~L~~i~ 339 (379)
T 4h09_A 334 ALSTIS 339 (379)
T ss_dssp TCCCCC
T ss_pred CCCEEE
Confidence 555543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.25 E-value=0.011 Score=47.29 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=26.1
Q ss_pred cccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEEcc
Q 041146 97 SVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFDTS 158 (182)
Q Consensus 97 ~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~L~ 158 (182)
.|.++.+|+.+++..+ ++..-...|.++++|+.+++..+ +. .++ ..+.++++|+.+++.
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEE
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEEC
Confidence 3444555555555322 33122233445555555555443 33 222 344455555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.07 E-value=0.0024 Score=46.77 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=60.6
Q ss_pred ccCCCCCCEEEeeCC-CCCC----CCccccCCCCCCcEeeccCCcCCCc----cchhccCCCCCCEEEcccCcCcCC---
Q 041146 98 VGNLTCLKVINLQEN-NFHG----QIPDEIGRLQQLQDLNLTYNYLSGS----IPSNLSHCRELRVFDTSANGLIGQ--- 165 (182)
Q Consensus 98 l~~l~~L~~L~l~~n-~l~g----~~p~~l~~l~~L~~L~ls~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~~~--- 165 (182)
+.+-+.|+.|++++| .+.. .+-+.+..-+.|+.|++++|++... +.+.+..-+.|+.|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445578999999986 7652 1334456667899999999999843 234455568899999999999743
Q ss_pred -CCccccCCccCCeEecC
Q 041146 166 -IPDRLSSLEKLEIIRLG 182 (182)
Q Consensus 166 -~p~~l~~l~~L~~L~Ls 182 (182)
+-+.+..-+.|+.|+|+
T Consensus 117 ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHTTTTCCCSEEECC
T ss_pred HHHHHHhhCCceeEEECC
Confidence 22345555678888873
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.88 E-value=0.023 Score=45.47 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=59.3
Q ss_pred cccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEEcccCcCcCCCCccccCCcc
Q 041146 97 SVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFDTSANGLIGQIPDRLSSLEK 175 (182)
Q Consensus 97 ~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 175 (182)
.+..+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++ .++ ..|.++++|+.+++..| ++..-...|.++++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 3566777888877654 44233456788899999999754 55 554 57888999999999776 66455667889999
Q ss_pred CCeEec
Q 041146 176 LEIIRL 181 (182)
Q Consensus 176 L~~L~L 181 (182)
|+.+++
T Consensus 368 L~~i~l 373 (394)
T 4fs7_A 368 LKKVEL 373 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998875
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.85 E-value=0.025 Score=45.28 Aligned_cols=96 Identities=17% Similarity=0.288 Sum_probs=63.7
Q ss_pred cEEEEEecCCCCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEEc
Q 041146 79 RVTALKLESKQLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFDT 157 (182)
Q Consensus 79 ~l~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~L 157 (182)
.++.+.+. +.++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++ .++ ..|.++++|+.+++
T Consensus 289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEE
T ss_pred ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEE
Confidence 34555553 3344344456888999999999764 55333457889999999999765 55 554 57899999999999
Q ss_pred ccCcCcCCCCccccCCccCCeEec
Q 041146 158 SANGLIGQIPDRLSSLEKLEIIRL 181 (182)
Q Consensus 158 ~~N~l~~~~p~~l~~l~~L~~L~L 181 (182)
.+|.... ..+....+|+.+.+
T Consensus 365 ~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 365 SGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp SSCHHHH---HTCBCCCCC-----
T ss_pred CCceeeh---hhhhccCCCCEEEe
Confidence 8876542 34555566666543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.49 E-value=0.076 Score=41.98 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=62.0
Q ss_pred CccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccCCcCCCccc-hhccCCCCCCEEEcccCcCcCCCCccccCC
Q 041146 95 PPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTYNYLSGSIP-SNLSHCRELRVFDTSANGLIGQIPDRLSSL 173 (182)
Q Consensus 95 p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 173 (182)
...+..+..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +. .++ ..+.++++|+.+++.++.++..-...|.++
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCC
Confidence 445667788888888665 44233445677888998888654 44 444 467889999999999888875656788899
Q ss_pred ccCCeEec
Q 041146 174 EKLEIIRL 181 (182)
Q Consensus 174 ~~L~~L~L 181 (182)
.+|+.+.+
T Consensus 310 ~~L~~i~l 317 (379)
T 4h09_A 310 VKLSSVTL 317 (379)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEc
Confidence 99998876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.05 E-value=29 Score=21.77 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=25.7
Q ss_pred CCcccCCccccCCCCCCEEEeeCCCCCCCCccccCCCCCCcEeeccC
Q 041146 89 QLVGSIPPSVGNLTCLKVINLQENNFHGQIPDEIGRLQQLQDLNLTY 135 (182)
Q Consensus 89 ~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~L~~L~ls~ 135 (182)
+++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 334333445666777777766554 2313334566677777666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.16 E-value=89 Score=19.43 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCCCCCccccCCCCCCcEeeccCCcCCCccchhccCCCCCCEEEcccC
Q 041146 113 NFHGQIPDEIGRLQQLQDLNLTYNYLSGSIPSNLSHCRELRVFDTSAN 160 (182)
Q Consensus 113 ~l~g~~p~~l~~l~~L~~L~ls~n~l~g~~p~~~~~l~~L~~L~L~~N 160 (182)
.++..-...|.++++|+.+.+..+ ++..-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344333456889999999999875 34122457889999999998754
No 167
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=30.12 E-value=59 Score=16.42 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 041146 7 NSKWFWLHFLEFIHVLW 23 (182)
Q Consensus 7 ~~~~~~~~~l~~~~~~~ 23 (182)
|.+-+|.+++++.+..+
T Consensus 14 RTSLy~GLLlifvlavl 30 (37)
T 3arc_L 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56677777776655443
No 168
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.77 E-value=32 Score=15.03 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=6.2
Q ss_pred CCcccceee
Q 041146 64 HFCNWVGVT 72 (182)
Q Consensus 64 ~~c~~~gv~ 72 (182)
..|+|.|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 468888753
Done!