BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041147
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CJH3|PLXB1_MOUSE Plexin-B1 OS=Mus musculus GN=Plxnb1 PE=1 SV=2
Length = 2119
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 157 VTLPGFGRSPLVRQLRITDSPFPLKDEGDGQVDKA--AEDFIKKFYKDLMLQKSMAAFES 214
V PG+ SPL R L + DS P ++G GQ+ ++ F+ KF L Q++ +A +
Sbjct: 1559 VFFPGYRESPLHRDLGVPDSRRPTVEQGLGQLSNLLNSKLFLTKFIHTLESQRTFSARDR 1618
Query: 215 PY 216
Y
Sbjct: 1619 AY 1620
>sp|Q820Y4|MURG_TROWT UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Tropheryma whipplei (strain Twist)
GN=murG PE=3 SV=1
Length = 356
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 84 EFSCSNSPAFNFSYPFTNYGHNKRKHHHYHLQKAAKAYHYDDVATVQAVQRVLEMLNTSD 143
E PA YPF G+ +++ + H++ AA+ +D++ ++ +LE++ +
Sbjct: 269 ELCTFGIPAIYIPYPF---GNGEQRRNVSHMESAARIIQENDLSQIRLEDELLELMTDDE 325
Query: 144 NNHAVASAA 152
A++ AA
Sbjct: 326 RREAMSIAA 334
>sp|Q83HK1|MURG_TROW8 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Tropheryma whipplei (strain TW08/27)
GN=murG PE=3 SV=1
Length = 356
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 84 EFSCSNSPAFNFSYPFTNYGHNKRKHHHYHLQKAAKAYHYDDVATVQAVQRVLEMLNTSD 143
E PA YPF G+ +++ + H++ AA+ +D++ ++ +LE++ +
Sbjct: 269 ELCTFGIPAIYIPYPF---GNGEQRRNVSHMESAARIIQENDLSQIRLEDELLELMTDDE 325
Query: 144 NNHAVASAA 152
A++ AA
Sbjct: 326 RREAMSIAA 334
>sp|O43157|PLXB1_HUMAN Plexin-B1 OS=Homo sapiens GN=PLXNB1 PE=1 SV=3
Length = 2135
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 157 VTLPGFGRSPLVRQLRITDSPFPLKDEGDGQVDKA--AEDFIKKFYKDLMLQKSMAAFES 214
+ PG SPL R L + +S P ++G GQ+ ++ F+ KF L Q++ +A +
Sbjct: 1575 IFFPGHRESPLHRDLGVPESRRPTVEQGLGQLSNLLNSKLFLTKFIHTLESQRTFSARDR 1634
Query: 215 PY 216
Y
Sbjct: 1635 AY 1636
>sp|Q5EB20|FA65C_DANRE Protein FAM65C OS=Danio rerio GN=fam65c PE=2 SV=1
Length = 978
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 23/97 (23%)
Query: 62 HLSSLSCRSNDAHLSFISPKEYEFSCSNSPAFNFSYPFTNYGHNKRKHHHYHLQKAAKAY 121
+LS S H+S +S + Y +C SP KR+ +A K
Sbjct: 801 YLSRWSITDFGEHISLLSKEVYLIACLESP--------------KRR-------RALKKL 839
Query: 122 HYDDVATVQAVQRVLEMLN--TSDNNHAVASAAPSPL 156
++ +Q R+L++L +D NH VASAA S L
Sbjct: 840 KGKRISDLQPTGRILQLLAKLQTDANHKVASAASSCL 876
>sp|Q7SYN4|5NT3_DANRE Cytosolic 5'-nucleotidase 3 OS=Danio rerio GN=nt5c3 PE=2 SV=2
Length = 286
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 17 KIVRIVFFMIKAGISKSKIMVDFHLMLKR--GNKLAGKAIGNLIFHNHLSSLSCRSNDAH 74
++ +I+ +IK G SK +I+ DF + L R N + N+I ++ L + CR H
Sbjct: 17 RVEQIICGLIKGGASKLQIITDFDMTLSRFAVNGKRCPSCHNIIDNSKLVTDDCRKKLVH 76
Query: 75 LSFISPKEYEFSCSNSPAFNFS--YPF 99
L KE + P YPF
Sbjct: 77 L-----KETYYPIEIDPHLTMEEKYPF 98
>sp|Q5ZUQ7|GATA_LEGPH Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=gatA PE=3 SV=1
Length = 483
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 110 HHYHLQKAAKAYHYDDVATVQAVQRVLEMLNTS---------DNNHAVASAAPSPLVTLP 160
HY L + +KA H + ++V+ Q + + ++ D + A+ A + LV
Sbjct: 2 EHYSLAQLSKALHNREFSSVELTQHCINKIQSNKDLNAFISLDEDQALKEAQSADLVLKS 61
Query: 161 GFGRSPLVRQLRITDSPFPLKDEGDGQVDKAAEDFIKKFYKDLMLQKSMAAFESPY 216
G G+ PL T P LKD F K K +A F++PY
Sbjct: 62 GEGK-PL------TGIPMALKDL-----------FCTKRLNTTCASKMLANFQAPY 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,604,788
Number of Sequences: 539616
Number of extensions: 3378591
Number of successful extensions: 9405
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 9402
Number of HSP's gapped (non-prelim): 23
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)