Query 041147
Match_columns 222
No_of_seqs 111 out of 123
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qrjb1 a.28.3.1 (B:131-214) H 36.9 6.5 0.00047 27.3 1.6 18 191-208 13-30 (84)
2 d1d1da1 a.28.3.1 (A:151-230) R 35.2 6.9 0.0005 27.0 1.4 20 190-209 12-31 (80)
3 d2eiaa1 a.28.3.1 (A:148-222) E 34.7 8.5 0.00062 25.9 1.8 18 191-208 13-30 (75)
4 d1q2oa_ d.174.1.1 (A:) Nitric 28.1 12 0.0009 32.9 2.2 21 186-206 57-77 (416)
5 d3e7ma1 d.174.1.1 (A:77-497) N 22.4 11 0.0008 33.3 0.7 21 186-206 55-75 (421)
6 d2b3ja1 c.97.1.2 (A:1-151) tRN 21.4 25 0.0018 25.5 2.5 18 188-205 133-150 (151)
7 d1om4a_ d.174.1.1 (A:) Nitric 21.3 20 0.0015 31.6 2.2 20 186-205 54-73 (418)
8 d1a8oa_ a.28.3.1 (A:) HIV caps 17.7 27 0.0019 22.9 1.7 18 191-208 10-27 (70)
9 d1ivsa2 a.27.1.1 (A:579-796) V 16.6 30 0.0022 26.2 2.1 18 12-30 1-18 (218)
10 d1dzfa1 c.52.3.1 (A:5-143) Euk 16.6 40 0.0029 24.6 2.7 31 12-42 5-38 (139)
No 1
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=36.94 E-value=6.5 Score=27.33 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhHHh
Q 041147 191 AAEDFIKKFYKDLMLQKS 208 (222)
Q Consensus 191 ~AeeFI~rFy~qlr~Q~~ 208 (222)
--++|++|||+.++.+..
T Consensus 13 pf~dfVdRl~~a~~~~~~ 30 (84)
T d1qrjb1 13 PYHAFVERLNIALDNGLP 30 (84)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 367899999999998754
No 2
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=35.16 E-value=6.9 Score=27.01 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhHHhh
Q 041147 190 KAAEDFIKKFYKDLMLQKSM 209 (222)
Q Consensus 190 ~~AeeFI~rFy~qlr~Q~~~ 209 (222)
.--++|+.|||+.++.++..
T Consensus 12 Epf~dfVdRl~~al~~~~~~ 31 (80)
T d1d1da1 12 ESFVDFANRLIKAVEGSDLP 31 (80)
T ss_dssp SCHHHHHHHHHHHHHTSSCC
T ss_pred ccHHHHHHHHHHHHHHhcCC
Confidence 34678999999999987643
No 3
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=34.65 E-value=8.5 Score=25.95 Aligned_cols=18 Identities=6% Similarity=0.303 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhHHh
Q 041147 191 AAEDFIKKFYKDLMLQKS 208 (222)
Q Consensus 191 ~AeeFI~rFy~qlr~Q~~ 208 (222)
--++|+.||++.++.+..
T Consensus 13 pf~dfVdRl~~a~~~~~~ 30 (75)
T d2eiaa1 13 PYPEFVDRLLSQIKSEGH 30 (75)
T ss_dssp CHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhhcC
Confidence 457899999999998753
No 4
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.06 E-value=12 Score=32.94 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 041147 186 GQVDKAAEDFIKKFYKDLMLQ 206 (222)
Q Consensus 186 ~~VD~~AeeFI~rFy~qlr~Q 206 (222)
++|-.+|++||+.||..|+..
T Consensus 57 e~ll~eA~~Fi~q~y~e~~~~ 77 (416)
T d1q2oa_ 57 EQLLSQARDFINQYYSSIKRS 77 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHhhCcc
Confidence 579999999999999998753
No 5
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.39 E-value=11 Score=33.33 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 041147 186 GQVDKAAEDFIKKFYKDLMLQ 206 (222)
Q Consensus 186 ~~VD~~AeeFI~rFy~qlr~Q 206 (222)
++|=.+|++||+.||..|+..
T Consensus 55 e~ll~eA~~Fi~qyy~e~~~~ 75 (421)
T d3e7ma1 55 EELLPHAIEFINQYYGSFKEA 75 (421)
T ss_dssp HHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 579999999999999887654
No 6
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}
Probab=21.36 E-value=25 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 041147 188 VDKAAEDFIKKFYKDLML 205 (222)
Q Consensus 188 VD~~AeeFI~rFy~qlr~ 205 (222)
-.++|.+.++.||+++|.
T Consensus 133 l~~e~~~L~~~Ff~~~r~ 150 (151)
T d2b3ja1 133 LKEACSTLLTTFFKNLRA 150 (151)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 378899999999999884
No 7
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.28 E-value=20 Score=31.58 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHhh
Q 041147 186 GQVDKAAEDFIKKFYKDLML 205 (222)
Q Consensus 186 ~~VD~~AeeFI~rFy~qlr~ 205 (222)
++|=.+|++||+.||..++.
T Consensus 54 e~ll~~A~~Fi~qyy~e~~~ 73 (418)
T d1om4a_ 54 DQLFPLAKEFLDQYYSSIKR 73 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 57899999999999999864
No 8
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=17.67 E-value=27 Score=22.90 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhHHh
Q 041147 191 AAEDFIKKFYKDLMLQKS 208 (222)
Q Consensus 191 ~AeeFI~rFy~qlr~Q~~ 208 (222)
--++|+.||++.++.+..
T Consensus 10 pf~dfV~Rl~~~~~~~~~ 27 (70)
T d1a8oa_ 10 PFRDYVDRFYKTLRAEQA 27 (70)
T ss_dssp CHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHhhcC
Confidence 357899999999998754
No 9
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=16.62 E-value=30 Score=26.18 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 041147 12 AKKLWKIVRIVFFMIKAGI 30 (222)
Q Consensus 12 aKRlW~vvR~v~fMlRKGi 30 (222)
|-||||..|.++ |-..+.
T Consensus 1 aNKlwNa~rF~~-~~~~~~ 18 (218)
T d1ivsa2 1 ANKLYNAARFVL-LSREGF 18 (218)
T ss_dssp HHHHHHHHHHHH-HHSSSC
T ss_pred ChHHHHHHHHHH-hCcCCC
Confidence 569999999874 445553
No 10
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.61 E-value=40 Score=24.63 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHH-hc--cccchhhhhHHHH
Q 041147 12 AKKLWKIVRIVFFMIK-AG--ISKSKIMVDFHLM 42 (222)
Q Consensus 12 aKRlW~vvR~v~fMlR-KG--isKrKLmmDlhLm 42 (222)
..|||.+-|.|+-||+ +| |+..-|-+.+.-.
T Consensus 5 ~~rlfr~rrTv~EMl~DRGY~V~~~el~~s~~~F 38 (139)
T d1dzfa1 5 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDF 38 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCHHHHcCCHHHH
Confidence 5799999999999998 45 5666666666543
Done!