Query 041149
Match_columns 389
No_of_seqs 168 out of 718
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ldz_A STAM-1, signal transduc 100.0 4.1E-44 1.4E-48 313.9 15.4 138 32-172 1-140 (140)
2 1x5b_A Signal transducing adap 100.0 9.2E-44 3.2E-48 319.0 17.9 147 30-178 9-157 (163)
3 1mhq_A ADP-ribosylation factor 100.0 6.1E-42 2.1E-46 302.7 15.6 137 37-176 1-143 (148)
4 1elk_A Target of MYB1; superhe 100.0 1E-41 3.4E-46 304.1 15.8 138 36-173 15-157 (157)
5 1juq_A ADP-ribosylation factor 100.0 2.7E-41 9.1E-46 305.2 16.6 138 35-175 11-156 (171)
6 3zyq_A Hepatocyte growth facto 100.0 2E-41 6.8E-46 318.8 15.2 146 30-176 1-148 (226)
7 3g2s_A C-terminal fragment of 100.0 4.4E-41 1.5E-45 297.3 15.9 133 35-170 9-147 (149)
8 3rru_A TOM1L1 protein; structu 100.0 6.5E-41 2.2E-45 297.1 13.5 134 35-168 14-152 (152)
9 1dvp_A HRS, hepatocyte growth 100.0 2.6E-38 8.9E-43 296.1 16.0 143 31-176 1-145 (220)
10 1oxz_A ADP-ribosylation factor 99.9 4.4E-22 1.5E-26 180.9 7.2 117 195-312 21-162 (186)
11 1wrd_A TOM1, target of MYB pro 99.8 7.3E-21 2.5E-25 157.9 12.9 88 224-312 8-97 (103)
12 1naf_A ADP-ribosylation factor 99.8 1.3E-21 4.6E-26 173.4 8.5 104 208-312 29-146 (158)
13 1o3x_A ADP-ribosylation factor 99.8 3.2E-21 1.1E-25 168.2 10.6 104 208-312 20-137 (140)
14 1wr6_A ADP-ribosylation factor 99.8 2.9E-21 9.8E-26 162.1 3.9 86 227-312 6-93 (111)
15 1vdy_A Hypothetical protein (R 98.0 4.9E-05 1.7E-09 65.9 10.6 107 39-148 13-131 (140)
16 1inz_A EPS15-interacting porte 97.9 0.00011 3.7E-09 64.3 12.5 126 22-148 8-141 (148)
17 1sz9_A PCF11 protein; RNA poly 97.9 0.0002 6.9E-09 62.2 12.9 90 57-148 26-115 (144)
18 1xgw_A Epsin 4; ENTH, enthopro 97.9 0.0002 6.7E-09 64.4 13.0 123 22-147 19-152 (176)
19 1eyh_A Epsin; superhelix of he 97.6 0.00021 7.3E-09 62.2 8.7 112 35-147 3-122 (144)
20 2pjw_V Vacuolar protein sortin 97.5 0.00069 2.4E-08 54.4 9.4 73 236-311 9-84 (91)
21 3onk_A Epsin-3, ENT3; helix, p 97.4 0.0012 4.1E-08 57.8 11.0 113 35-148 9-130 (150)
22 2pjw_H Uncharacterized protein 96.9 0.00055 1.9E-08 54.6 3.7 73 235-310 9-85 (88)
23 4flb_A Regulation of nuclear P 96.4 0.0095 3.2E-07 50.3 8.1 106 36-148 8-113 (132)
24 3d9j_A RNA-binding protein 16; 96.1 0.008 2.7E-07 52.0 6.0 95 51-148 22-120 (145)
25 1hx8_A Synapse-enriched clathr 95.0 0.097 3.3E-06 50.4 9.6 75 35-109 21-95 (299)
26 3zyl_A Phosphatidylinositol-bi 94.4 0.12 4.2E-06 49.1 8.7 74 36-109 27-100 (271)
27 3zym_A Phosphatidylinositol-bi 94.3 0.14 4.6E-06 49.7 8.7 74 36-109 27-100 (310)
28 4fu3_A Regulation of nuclear P 93.4 0.046 1.6E-06 46.1 3.2 102 37-148 8-114 (135)
29 2qk2_A LP04448P; mini spindles 91.2 1.7 5.7E-05 39.1 11.0 94 52-148 26-128 (242)
30 2km4_A Regulator of TY1 transp 91.1 0.69 2.4E-05 39.4 7.8 90 58-148 22-116 (142)
31 3f1i_H Hepatocyte growth facto 89.9 1.9 6.3E-05 34.6 8.6 75 230-307 5-81 (98)
32 3b2a_A TON_1937, putative unch 87.9 2.3 7.8E-05 40.0 9.1 95 72-168 31-127 (265)
33 2qk1_A Protein STU2; STU2P, XM 87.2 2.7 9.3E-05 38.6 9.5 75 72-148 144-221 (249)
34 3clj_A Protein NRD1; CTD-inter 86.1 1.9 6.3E-05 37.7 7.1 95 54-148 21-130 (157)
35 2qk1_A Protein STU2; STU2P, XM 84.7 6.9 0.00024 35.8 10.9 95 51-148 26-134 (249)
36 4ffb_C Protein STU2; tubulin f 84.3 2.9 9.9E-05 38.5 8.1 74 71-146 136-211 (278)
37 4db6_A Armadillo repeat protei 81.2 4.8 0.00017 34.5 7.9 70 75-146 139-208 (210)
38 2qk2_A LP04448P; mini spindles 80.4 16 0.00056 32.3 11.4 74 71-147 130-205 (242)
39 4ffb_C Protein STU2; tubulin f 75.0 8.3 0.00029 35.3 8.0 72 75-148 56-133 (278)
40 4hxt_A De novo protein OR329; 74.2 21 0.0007 30.9 10.0 72 75-148 171-242 (252)
41 4hxt_A De novo protein OR329; 73.4 11 0.00037 32.8 8.0 72 74-147 44-115 (252)
42 4db6_A Armadillo repeat protei 71.4 16 0.00054 31.1 8.5 71 75-147 97-167 (210)
43 2of3_A ZYG-9; multifunctional 66.2 21 0.00073 33.5 8.6 95 51-147 56-161 (266)
44 4db8_A Armadillo-repeat protei 66.0 12 0.00041 32.8 6.7 71 75-147 139-209 (252)
45 1xqr_A HSPBP1 protein; armadil 65.4 16 0.00055 34.4 7.7 71 74-147 167-238 (296)
46 4db8_A Armadillo-repeat protei 65.2 17 0.00057 31.9 7.4 71 75-147 97-167 (252)
47 3ltj_A Alpharep-4; protein eng 60.9 40 0.0014 28.4 8.9 60 74-146 76-135 (201)
48 1hu3_A EIF4GII; heat repeat, t 60.8 32 0.0011 31.7 8.7 86 55-144 147-236 (260)
49 3ltm_A Alpha-REP4; protein eng 55.5 52 0.0018 28.0 8.7 58 35-99 18-75 (211)
50 1b3u_A Protein (protein phosph 54.0 39 0.0013 33.2 8.6 70 73-147 518-587 (588)
51 2z6h_A Catenin beta-1, beta-ca 53.8 36 0.0012 34.9 8.6 72 74-147 98-169 (644)
52 1jdh_A Beta-catenin; beta-cate 53.8 43 0.0015 32.6 8.8 73 74-148 101-173 (529)
53 3ltj_A Alpharep-4; protein eng 53.5 53 0.0018 27.6 8.4 82 51-147 86-167 (201)
54 3ltm_A Alpha-REP4; protein eng 51.8 44 0.0015 28.4 7.6 81 51-146 91-171 (211)
55 2jdq_A Importin alpha-1 subuni 51.5 55 0.0019 31.0 9.0 71 75-147 235-305 (450)
56 1te4_A Conserved protein MTH18 51.4 69 0.0024 25.3 8.4 76 52-142 53-128 (131)
57 3f1i_S STAM-1, signal transduc 51.0 80 0.0027 24.1 10.1 67 240-309 9-76 (77)
58 1ibr_B P95, importin beta-1 su 50.8 63 0.0022 30.6 9.3 74 73-147 127-203 (462)
59 2jdq_A Importin alpha-1 subuni 48.9 58 0.002 30.8 8.7 72 74-147 276-347 (450)
60 2vgl_B AP-2 complex subunit be 48.3 1E+02 0.0035 31.3 10.9 52 55-106 139-192 (591)
61 2z6g_A B-catenin; FULL-length, 48.1 48 0.0016 35.3 8.6 71 75-147 235-305 (780)
62 4b8j_A Importin subunit alpha- 47.9 80 0.0027 31.1 9.8 73 74-148 160-233 (528)
63 1wa5_B Importin alpha subunit; 47.5 39 0.0013 33.5 7.5 72 74-147 299-370 (530)
64 4b8j_A Importin subunit alpha- 45.8 89 0.003 30.7 9.8 72 75-147 287-358 (528)
65 2bpt_A Importin beta-1 subunit 45.1 58 0.002 33.9 8.6 75 73-148 638-712 (861)
66 3dad_A FH1/FH2 domain-containi 45.0 97 0.0033 30.1 9.4 160 5-169 119-306 (339)
67 1xqr_A HSPBP1 protein; armadil 44.9 35 0.0012 32.0 6.3 71 75-147 82-154 (296)
68 1w63_A Adapter-related protein 43.4 67 0.0023 33.0 8.7 88 54-148 290-380 (618)
69 2z6h_A Catenin beta-1, beta-ca 43.3 73 0.0025 32.6 8.9 73 74-147 14-86 (644)
70 1ibr_B P95, importin beta-1 su 42.8 1.3E+02 0.0046 28.2 10.2 73 73-148 365-438 (462)
71 3grl_A General vesicular trans 41.4 35 0.0012 36.1 6.1 105 59-169 111-222 (651)
72 2p6v_A Transcription initiatio 41.1 37 0.0013 27.8 4.8 34 115-148 23-56 (114)
73 4fdd_A Transportin-1; heat rep 41.0 87 0.003 33.1 9.3 125 22-148 615-743 (852)
74 3dad_A FH1/FH2 domain-containi 40.0 85 0.0029 30.5 8.1 60 78-137 258-326 (339)
75 2vgl_A Adaptor protein complex 39.1 1.2E+02 0.004 31.4 9.7 73 72-148 327-399 (621)
76 2vgl_B AP-2 complex subunit be 38.3 2.3E+02 0.0079 28.6 11.7 72 72-148 119-190 (591)
77 2vso_E Eukaryotic initiation f 37.5 1.3E+02 0.0045 27.9 9.0 83 57-143 176-275 (284)
78 1jdh_A Beta-catenin; beta-cate 36.7 81 0.0028 30.6 7.7 74 73-147 16-89 (529)
79 1o5h_A Formiminotetrahydrofola 36.1 1.2E+02 0.004 27.5 8.0 51 240-293 49-102 (214)
80 1wa5_B Importin alpha subunit; 36.1 66 0.0023 31.8 7.0 73 73-147 256-328 (530)
81 2of3_A ZYG-9; multifunctional 35.7 90 0.0031 29.1 7.4 67 71-144 164-233 (266)
82 3nmw_A APC variant protein; AR 35.0 98 0.0034 29.7 7.8 73 74-147 127-200 (354)
83 1w63_A Adapter-related protein 33.1 97 0.0033 31.8 7.9 45 57-101 90-134 (618)
84 3tpo_A Importin subunit alpha- 33.0 97 0.0033 30.9 7.7 73 73-147 250-322 (529)
85 3tt9_A Plakophilin-2; cell adh 32.3 1.1E+02 0.0038 27.7 7.3 72 74-147 52-124 (233)
86 3ul1_B Importin subunit alpha- 31.9 1.5E+02 0.005 29.5 8.8 73 73-147 231-303 (510)
87 2z6g_A B-catenin; FULL-length, 30.4 1E+02 0.0035 32.7 7.7 74 72-146 148-221 (780)
88 3tt9_A Plakophilin-2; cell adh 30.2 1E+02 0.0034 28.0 6.6 70 76-147 10-81 (233)
89 1vf6_C Maguk P55 subfamily mem 29.6 40 0.0014 25.1 3.0 51 255-308 12-62 (72)
90 1xm9_A Plakophilin 1; armadill 29.5 1.1E+02 0.0037 30.1 7.2 69 76-147 4-73 (457)
91 3tpo_A Importin subunit alpha- 29.2 1.9E+02 0.0064 28.7 9.1 67 75-142 77-144 (529)
92 1b3u_A Protein (protein phosph 29.0 2.3E+02 0.008 27.5 9.7 71 73-148 440-510 (588)
93 3l6x_A Catenin delta-1; cateni 29.0 1E+02 0.0034 32.1 7.1 71 74-145 90-161 (584)
94 1qgr_A Protein (importin beta 28.6 1.7E+02 0.0057 30.4 8.9 76 72-148 126-204 (876)
95 2bpt_A Importin beta-1 subunit 27.9 2.6E+02 0.0088 28.9 10.2 74 73-147 133-210 (861)
96 2ii0_A SOS-1, SON of sevenless 27.8 4.7E+02 0.016 26.1 12.3 86 36-126 45-160 (490)
97 4fdd_A Transportin-1; heat rep 27.0 2E+02 0.007 30.2 9.3 95 52-148 370-472 (852)
98 2vgl_A Adaptor protein complex 26.6 93 0.0032 32.2 6.4 52 58-109 169-222 (621)
99 3tjz_B Coatomer subunit gamma; 25.3 36 0.0012 33.2 2.8 69 38-106 140-208 (355)
100 3nmz_A APC variant protein; pr 25.1 1.8E+02 0.0061 29.0 8.0 73 74-147 243-316 (458)
101 1qgr_A Protein (importin beta 24.8 4.7E+02 0.016 26.9 11.6 96 50-148 375-480 (876)
102 1m1j_C Fibrinogen gamma chain; 23.6 5E+02 0.017 25.6 10.8 52 227-278 46-98 (409)
103 1u6g_C TIP120 protein, CAND1; 23.2 2.7E+02 0.0092 30.7 9.7 73 75-148 435-507 (1230)
104 3ul1_B Importin subunit alpha- 23.2 2.1E+02 0.0072 28.3 8.1 67 75-143 359-426 (510)
105 2dnx_A Syntaxin-12; snare, HAB 22.9 3.1E+02 0.011 22.4 8.6 86 226-311 18-114 (130)
106 3ezq_B Protein FADD; apoptosis 22.6 71 0.0024 26.2 3.7 68 97-168 8-77 (122)
107 2dal_A Protein KIAA0794; FAS a 21.9 1.1E+02 0.0039 21.8 4.3 33 272-304 18-51 (62)
108 1bh9_B TAFII28; histone fold, 21.9 91 0.0031 24.3 4.0 41 114-169 46-87 (89)
109 3now_A UNC-45 protein, SD10334 21.8 2.9E+02 0.0099 29.9 9.2 73 76-148 332-409 (810)
110 4e17_B Catenin alpha-1; four h 21.0 1.1E+02 0.0037 20.5 3.5 25 255-279 10-34 (40)
111 1oyz_A Hypothetical protein YI 21.0 4.2E+02 0.014 23.1 9.2 28 72-99 126-153 (280)
112 3l6x_A Catenin delta-1; cateni 20.1 2.3E+02 0.0078 29.4 7.8 72 74-147 48-119 (584)
113 2x19_B Importin-13; nuclear tr 20.1 1.4E+02 0.0047 31.9 6.3 70 75-147 530-599 (963)
No 1
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=4.1e-44 Score=313.85 Aligned_cols=138 Identities=24% Similarity=0.439 Sum_probs=133.5
Q ss_pred cCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-
Q 041149 32 LQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS- 110 (389)
Q Consensus 32 f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~- 110 (389)
|+ ++||+++|++|||+.+.++||++|++|||+||+++++|++|+|+|+|||+|+||++|++||+|||+||+|||++||
T Consensus 1 ~~-~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ 79 (140)
T 3ldz_A 1 FA-TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHL 79 (140)
T ss_dssp CC-CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CC-CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44 7999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCC
Q 041149 111 EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPP 172 (389)
Q Consensus 111 evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP 172 (389)
+|++++|+++|+++++ .+++.||+||+++|+.|+.+ ++.++|..|.++|++||++||.||
T Consensus 80 evas~~Fl~el~~l~~--~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 80 EVCSRDFASEVSNVLN--KGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHSSHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTTCCCC
T ss_pred HHhhHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHccCcCc
Confidence 9999999999999996 47889999999999999999 888999999999999999999998
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=9.2e-44 Score=319.04 Aligned_cols=147 Identities=26% Similarity=0.410 Sum_probs=140.0
Q ss_pred hhcCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch
Q 041149 30 EMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF 109 (389)
Q Consensus 30 ~~f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F 109 (389)
+||+ ++|++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+|+||++|++||+|||+||||||++|
T Consensus 9 ~~~~-~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 9 PLFT-ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp CCCC-CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCcC-CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 4676 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCCCCCCCC
Q 041149 110 S-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPPVEDGNL 178 (389)
Q Consensus 110 ~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP~~~~~~ 178 (389)
| +|++++|+++|+++++ +++++.||+||+++|+.|+.+ ++.++|..|.++|++||++||.||..+...
T Consensus 88 h~evas~~Fl~el~~l~~-~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~~ 157 (163)
T 1x5b_A 88 HLEVCSRDFATEVRAVIK-NKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQT 157 (163)
T ss_dssp HHHHTSHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCCCCCCSSCC
T ss_pred HHHHhhHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 8 9999999999999998 478899999999999999999 888899999999999999999999987643
No 3
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=6.1e-42 Score=302.67 Aligned_cols=137 Identities=18% Similarity=0.322 Sum_probs=129.0
Q ss_pred hHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccH
Q 041149 37 PESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASE 115 (389)
Q Consensus 37 ~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~ 115 (389)
+|+.+|++||++.+.++||++|++|||+||+++.+|++|+|+|+|||+|+||++|++||+|||+||||||++|| +||++
T Consensus 1 s~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~ 80 (148)
T 1mhq_A 1 SLELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF 80 (148)
T ss_dssp CHHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred CHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHhhcC----CCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCCCCCC
Q 041149 116 KVLDEMVRMIEN----PQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPPVEDG 176 (389)
Q Consensus 116 ~Fl~eL~kl~~~----~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP~~~~ 176 (389)
+|+++|++++++ +.++..||+|||++|+.|+.+ ++. +.|.++|++||++||.||..+.
T Consensus 81 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~---p~i~~~y~~Lk~~G~~Fp~~~~ 143 (148)
T 1mhq_A 81 RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED---IKIRDAYQMLKKQGIIKQDPKL 143 (148)
T ss_dssp HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTSSCSCCCC
T ss_pred HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC---chHHHHHHHHHHcCCCCCCCCC
Confidence 999999999985 357899999999999999998 543 6799999999999999998764
No 4
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=1e-41 Score=304.10 Aligned_cols=138 Identities=29% Similarity=0.533 Sum_probs=130.9
Q ss_pred ChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCcchh-hhc
Q 041149 36 TPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISG-KSVVSQRLSLDLLEACAMNCEKVFS-EVA 113 (389)
Q Consensus 36 s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~-~n~~vql~AL~LLe~cVkNCG~~F~-eva 113 (389)
++++.+|++|||+.+.++||++|++|||.||+++++|++|+|+|+|||++ +|+++|++||+|||+||||||++|| +|+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva 94 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA 94 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999985 9999999999999999999999998 899
Q ss_pred cHHHHHH-HHHhhcC-CCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCCC
Q 041149 114 SEKVLDE-MVRMIEN-PQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPPV 173 (389)
Q Consensus 114 s~~Fl~e-L~kl~~~-~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP~ 173 (389)
+++|+++ |++++.+ ..++..||+||+++|+.|+.+ ++.++|..|.++|++||++||.||.
T Consensus 95 ~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 95 SQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 9999999 8999964 234679999999999999999 8889999999999999999999994
No 5
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=2.7e-41 Score=305.25 Aligned_cols=138 Identities=20% Similarity=0.387 Sum_probs=129.2
Q ss_pred CChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhc
Q 041149 35 PTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVA 113 (389)
Q Consensus 35 ~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-eva 113 (389)
.++++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+|+|++||++||+|||+||||||++|| +|+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~eva 90 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVG 90 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHT
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred cHHHHHHHHHhhcC----CCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCC--CCCC
Q 041149 114 SEKVLDEMVRMIEN----PQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPP--PVED 175 (389)
Q Consensus 114 s~~Fl~eL~kl~~~----~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~F--P~~~ 175 (389)
+++|+++|++++++ +.++..||+|||++|+.|+.+ ++ .+.|.++|++||++||.| |...
T Consensus 91 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~---~~~i~~~y~~Lk~~G~~f~~P~~~ 156 (171)
T 1juq_A 91 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE---EAKIKDAYHMLKRQGIVQSDPPIP 156 (171)
T ss_dssp SHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTSCSSCCCBC
T ss_pred hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHCCCCCCCCCCC
Confidence 99999999999974 357889999999999999998 44 468999999999999988 6544
No 6
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=2e-41 Score=318.77 Aligned_cols=146 Identities=25% Similarity=0.425 Sum_probs=135.1
Q ss_pred hhcCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch
Q 041149 30 EMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF 109 (389)
Q Consensus 30 ~~f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F 109 (389)
.||+++++|+.+|++||++.+.++||++|++|||+||+++++|++|+++|+|||+++||++|++||+|||+||||||.+|
T Consensus 1 ~m~~~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 1 SMGRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp ------CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCCCCCC
Q 041149 110 S-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPPVEDG 176 (389)
Q Consensus 110 ~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP~~~~ 176 (389)
| +|++++|+++|++++. +.++..||+|||++|+.|+.+ +++++|+.|.++|++||++||.||..+.
T Consensus 81 ~~eias~~fl~~l~~l~~-~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~ 148 (226)
T 3zyq_A 81 HDEVANKQTMEELKDLLK-RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKE 148 (226)
T ss_dssp HHHHSSHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCCCCCCCG
T ss_pred HHhhccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCCcccchh
Confidence 8 9999999999999997 478899999999999999999 8889999999999999999999998643
No 7
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=4.4e-41 Score=297.34 Aligned_cols=133 Identities=20% Similarity=0.357 Sum_probs=126.4
Q ss_pred CChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhc
Q 041149 35 PTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVA 113 (389)
Q Consensus 35 ~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-eva 113 (389)
+++++.+|++|||+.+.++||++|++|||.||+++++|++|+|+|+|||+|+||++|++||+|||+||||||++|| +|+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia 88 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVG 88 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred cHHHHHHHHHhhcCC----CCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCC
Q 041149 114 SEKVLDEMVRMIENP----QMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVP 170 (389)
Q Consensus 114 s~~Fl~eL~kl~~~~----~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~ 170 (389)
+++|+++|+++++++ .++..||+|||++|+.|+.+ ++ .+.|.++|++||++||.
T Consensus 89 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~---~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 89 KFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE---EVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC---CchHHHHHHHHHHCcCc
Confidence 999999999999863 57889999999999999998 54 36799999999999974
No 8
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=297.07 Aligned_cols=134 Identities=24% Similarity=0.526 Sum_probs=127.0
Q ss_pred CChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCcchh-hh
Q 041149 35 PTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISG-KSVVSQRLSLDLLEACAMNCEKVFS-EV 112 (389)
Q Consensus 35 ~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~-~n~~vql~AL~LLe~cVkNCG~~F~-ev 112 (389)
+|+++.+|++|||+.+.++||++|++|||+||+++++|++|+|+|+|||++ +|+++|++||+|||+||||||++|| +|
T Consensus 14 ~t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 14 ATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp GSHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 599999999999999999999999999999999999999999999999996 6999999999999999999999998 99
Q ss_pred ccHHHHHH-HHHhhcCC-CCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCC
Q 041149 113 ASEKVLDE-MVRMIENP-QMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERS 168 (389)
Q Consensus 113 as~~Fl~e-L~kl~~~~-~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~G 168 (389)
++++|+++ |+++++++ .++..||+|||++|+.|+.+ ++++++++|.++|++|+++|
T Consensus 94 ask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 94 VKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDLVKKG 152 (152)
T ss_dssp SSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHHHHC-
T ss_pred HhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHCc
Confidence 99999998 99999764 46678999999999999999 88899999999999999998
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=2.6e-38 Score=296.12 Aligned_cols=143 Identities=24% Similarity=0.341 Sum_probs=136.5
Q ss_pred hcCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh
Q 041149 31 MLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS 110 (389)
Q Consensus 31 ~f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~ 110 (389)
||+ ++++.+|++||++.+.++||++|++|||+||+++++|++|+++|+|||+++||++|++||+|||+||+|||.+||
T Consensus 1 mf~--~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 1 MFR--SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp CCC--SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCc--chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHH
Confidence 786 679999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCCCCCCCCC
Q 041149 111 -EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSVPPPVEDG 176 (389)
Q Consensus 111 -evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv~FP~~~~ 176 (389)
+|++++|+++|++++.+ .++..||+|||++|+.|+.+ ++.++|..|.++|+.|+.+|+.||....
T Consensus 79 ~eva~~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk~~G~~FP~~~e 145 (220)
T 1dvp_A 79 EEVFTKENCEMFSSFLES-TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELRE 145 (220)
T ss_dssp HHHSSHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHhHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCcccccccc
Confidence 99999999999999986 56789999999999999999 8888999999999999999999998643
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.85 E-value=4.4e-22 Score=180.95 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=91.4
Q ss_pred CCCCCCCCCCCCC-----------CCCCCcccccc--CCCC---------ChhHHHHHHHHHHhHHHHHHHHHhhCCCCC
Q 041149 195 SPSESYPIPETGL-----------HGADRTSFAYN--YGSL---------SVDEKKEFLVVTRNSLDLLSSILNTETEPK 252 (389)
Q Consensus 195 ~p~~~~~~~~~~~-----------~~p~d~~~~an--i~~~---------~~ek~~~eLe~vk~n~~LL~emL~~~~~~~ 252 (389)
+|+++.++|.+++ ++|+|++ +|| |+.| ...++..+|++|++|++||+|||+++.|++
T Consensus 21 ~~~~~~~if~deekSa~L~eLirs~~PeDL~-~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~ 99 (186)
T 1oxz_A 21 PPRPKNVIFEDEEKSKMLARLLKSSHPEDLR-AANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGG 99 (186)
T ss_dssp ----------CTTHHHHHHHHHSCCSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccccCCcHHHHHHHHHHhcCCChhhHH-HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3455678887654 4788887 566 3322 123567899999999999999999999876
Q ss_pred C--C-chhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 041149 253 P--I-KEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVQ 312 (389)
Q Consensus 253 ~--~-~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~~~~~ 312 (389)
. . ++|+++|||++||+||++|++||+++++||+.|++||++||+|++||.+|++++.|..
T Consensus 100 ~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~ 162 (186)
T 1oxz_A 100 AAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEE 162 (186)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 5 3 5689999999999999999999998888999999999999999999999999998854
No 11
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.85 E-value=7.3e-21 Score=157.90 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhhCCCCCCC--chhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHH
Q 041149 224 VDEKKEFLVVTRNSLDLLSSILNTETEPKPI--KEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVI 301 (389)
Q Consensus 224 ~ek~~~eLe~vk~n~~LL~emL~~~~~~~~~--~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl 301 (389)
..++.++|++|++|++||+|||+++.|++.. ++|+++|||++||+||++|++||+. ++||++|+++|++||+|+++|
T Consensus 8 ~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~-~~dee~l~~lL~~ND~L~~vl 86 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ-IANEQLTEELLIVNDNLNNVF 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHhhHHHHHHH
Confidence 4567899999999999999999999997754 5689999999999999999999995 689999999999999999999
Q ss_pred HHHHHHHHhhh
Q 041149 302 SRYEELEAAVQ 312 (389)
Q Consensus 302 ~rYe~~~~~~~ 312 (389)
.+|++++++..
T Consensus 87 ~ry~~~~~~~~ 97 (103)
T 1wrd_A 87 LRHERFERFRT 97 (103)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhcCCC
Confidence 99999998864
No 12
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.85 E-value=1.3e-21 Score=173.41 Aligned_cols=104 Identities=21% Similarity=0.393 Sum_probs=86.8
Q ss_pred CCCCCcccccc--CCCC---------ChhHHHHHHHHHHhHHHHHHHHHhhCCCCCCC---chhHHHHHHHHHHHHhHHH
Q 041149 208 HGADRTSFAYN--YGSL---------SVDEKKEFLVVTRNSLDLLSSILNTETEPKPI---KEDLTVSMLEKCKESQPVI 273 (389)
Q Consensus 208 ~~p~d~~~~an--i~~~---------~~ek~~~eLe~vk~n~~LL~emL~~~~~~~~~---~ddli~EL~~~Cr~mq~rI 273 (389)
++|+|++ +|| |+.+ ...++..+|++|++|++||+|||+++.|++.. ++|+++|||++|++|||+|
T Consensus 29 ~~PeDL~-~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 107 (158)
T 1naf_A 29 SHPEDLR-AANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 107 (158)
T ss_dssp CSTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHH
T ss_pred CChhhHH-HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 5788998 666 3322 12356789999999999999999999998754 5699999999999999999
Q ss_pred HHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 041149 274 QRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVQ 312 (389)
Q Consensus 274 ~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~~~~~ 312 (389)
++||+++++||+.|++||++||+|++||.+|+++++|..
T Consensus 108 ~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~ 146 (158)
T 1naf_A 108 FRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEE 146 (158)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 999998888999999999999999999999999998754
No 13
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.85 E-value=3.2e-21 Score=168.17 Aligned_cols=104 Identities=21% Similarity=0.388 Sum_probs=84.4
Q ss_pred CCCCCcccccc--CCCCC---------hhHHHHHHHHHHhHHHHHHHHHhhCCCCCCCc---hhHHHHHHHHHHHHhHHH
Q 041149 208 HGADRTSFAYN--YGSLS---------VDEKKEFLVVTRNSLDLLSSILNTETEPKPIK---EDLTVSMLEKCKESQPVI 273 (389)
Q Consensus 208 ~~p~d~~~~an--i~~~~---------~ek~~~eLe~vk~n~~LL~emL~~~~~~~~~~---ddli~EL~~~Cr~mq~rI 273 (389)
++|+|++ +|| |+.+. ..++..+|++|++|++||+|||+++.|++... +|+++|||++|++|||+|
T Consensus 20 ~~P~DL~-~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i 98 (140)
T 1o3x_A 20 SHPEDLR-AANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 98 (140)
T ss_dssp --------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 5788998 666 33321 23467899999999999999999999987764 489999999999999999
Q ss_pred HHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 041149 274 QRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAVQ 312 (389)
Q Consensus 274 ~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~~~~~ 312 (389)
++||+++++||+.|+++|++||+|++||.+|++++.|..
T Consensus 99 ~~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~~ 137 (140)
T 1o3x_A 99 FRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEE 137 (140)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 999998888999999999999999999999999998753
No 14
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.82 E-value=2.9e-21 Score=162.13 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=78.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhCCCCCCC--chhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHH
Q 041149 227 KKEFLVVTRNSLDLLSSILNTETEPKPI--KEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRY 304 (389)
Q Consensus 227 ~~~eLe~vk~n~~LL~emL~~~~~~~~~--~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rY 304 (389)
+.++|++|++|++||+|||+++.|++.. +.|+++|||++|++|||+|++||+++.+||+.|++||++||+|+++|.+|
T Consensus 6 ~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~rY 85 (111)
T 1wr6_A 6 RLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSY 85 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHHHH
Confidence 4567999999999999999999998775 34789999999999999999999988788899999999999999999999
Q ss_pred HHHHHhhh
Q 041149 305 EELEAAVQ 312 (389)
Q Consensus 305 e~~~~~~~ 312 (389)
++++.|..
T Consensus 86 ~~~~~g~~ 93 (111)
T 1wr6_A 86 KTIIEGQV 93 (111)
T ss_dssp HHTTTCC-
T ss_pred HHHhcCCC
Confidence 99987754
No 15
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=97.96 E-value=4.9e-05 Score=65.89 Aligned_cols=107 Identities=23% Similarity=0.246 Sum_probs=82.0
Q ss_pred HHHHHHHcCCCCCCCChHHHHHHHHhHhcCCC-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHH
Q 041149 39 SKMVDEATLETLEEPNWGMNMRICALINSEEF-SGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEK 116 (389)
Q Consensus 39 ~~lIekATs~~l~~~Dw~~ileicD~In~~~~-~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~ 116 (389)
..+|.+||+..-..+--.+.-||+++...+.. ...+.+..|-|||+++++++.+-||.||+.|++|+...|. ++-+.-
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 45799999997777777788899999988753 4689999999999999999999999999999999988995 443333
Q ss_pred HHHHHHHhhcC----CC----CC--hhHHHHHHHHHHHHhcC
Q 041149 117 VLDEMVRMIEN----PQ----MD--PGNRSRALQLIRAWGES 148 (389)
Q Consensus 117 Fl~eL~kl~~~----~~----~~--~~Vk~kiL~Li~~Wa~~ 148 (389)
. +++-+.. +. .+ ..||++..+++..-...
T Consensus 93 ~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 93 V---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp H---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred H---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 2 2333332 11 11 47999998888666554
No 16
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.94 E-value=0.00011 Score=64.30 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=94.0
Q ss_pred ccccchhhhhcCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 041149 22 RIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISG--KSVVSQRLSLDLLE 99 (389)
Q Consensus 22 ~~~~~~~~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~--~n~~vql~AL~LLe 99 (389)
|.+..+++-+..+-|+++..|..||+...-.|.-..+-+|++.-... ....+.+..|.|||.. ++-.+++-||.|||
T Consensus 8 ~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lle 86 (148)
T 1inz_A 8 SSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLME 86 (148)
T ss_dssp CCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHHHHHHH
Confidence 33444555555556999999999999988888888899999887663 5678999999999997 48999999999999
Q ss_pred HHHhcCCcchh-hhccHHH-HHHHHHh--hcCC--CCChhHHHHHHHHHHHHhcC
Q 041149 100 ACAMNCEKVFS-EVASEKV-LDEMVRM--IENP--QMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 100 ~cVkNCG~~F~-evas~~F-l~eL~kl--~~~~--~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.|++|+...|- ++.+.-+ +..|... +.+. .....||+|.-+++.--.+.
T Consensus 87 yLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~ 141 (148)
T 1inz_A 87 YLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDE 141 (148)
T ss_dssp HHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCH
Confidence 99999888873 5543333 5555542 2211 12357999988888766554
No 17
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=97.86 E-value=0.0002 Score=62.20 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=68.1
Q ss_pred HHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHH
Q 041149 57 MNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRS 136 (389)
Q Consensus 57 ~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~ 136 (389)
.|-.+....-.....++..+.+|.++|+.-+|..-+.+|-|+|..|+|||..|.......+.+.+..... ..+..+|.
T Consensus 26 ~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~--~~d~~~r~ 103 (144)
T 1sz9_A 26 IITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYL--LVDNTTRT 103 (144)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHH--TSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH--hCCHHHHH
Confidence 3433443333444579999999999999999999999999999999999999974333333333333433 35789999
Q ss_pred HHHHHHHHHhcC
Q 041149 137 RALQLIRAWGES 148 (389)
Q Consensus 137 kiL~Li~~Wa~~ 148 (389)
|+..|+..|.+.
T Consensus 104 k~~rL~~~W~~~ 115 (144)
T 1sz9_A 104 KLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHHhCc
Confidence 999999999986
No 18
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.86 E-value=0.0002 Score=64.37 Aligned_cols=123 Identities=15% Similarity=0.048 Sum_probs=85.7
Q ss_pred ccccchhhhhcCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHh-c--CCCHHHHHHHHHHH
Q 041149 22 RIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKI-S--GKSVVSQRLSLDLL 98 (389)
Q Consensus 22 ~~~~~~~~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL-~--~~n~~vql~AL~LL 98 (389)
|.+..+++-+..+-|+++.+|..||+...-.|.-..+-+||+.-... ....+.+..|.||| + .++-..++-||+||
T Consensus 19 r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LL 97 (176)
T 1xgw_A 19 RELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLL 97 (176)
T ss_dssp ---------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 33444455555556999999999999987788888888898876654 57789999999996 4 47999999999999
Q ss_pred HHHHhcCCcchh-hhccHHHHHHHHHhhc-----CCCCC--hhHHHHHHHHHHHHhc
Q 041149 99 EACAMNCEKVFS-EVASEKVLDEMVRMIE-----NPQMD--PGNRSRALQLIRAWGE 147 (389)
Q Consensus 99 e~cVkNCG~~F~-evas~~Fl~eL~kl~~-----~~~~~--~~Vk~kiL~Li~~Wa~ 147 (389)
|.|++|+...|- ++ ++.+..|..|-. +...+ ..||+|+-+++.--.+
T Consensus 98 eYLl~nGse~vv~~~--r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D 152 (176)
T 1xgw_A 98 AYLIRNGSERVVTSA--REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQD 152 (176)
T ss_dssp HHHHHHSCHHHHHHH--HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHH--HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCC
Confidence 999999988773 45 333333333321 11122 4699998888866665
No 19
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.59 E-value=0.00021 Score=62.16 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=83.2
Q ss_pred CChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCcchh-h
Q 041149 35 PTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGK--SVVSQRLSLDLLEACAMNCEKVFS-E 111 (389)
Q Consensus 35 ~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~--n~~vql~AL~LLe~cVkNCG~~F~-e 111 (389)
-|+++..|..||+...-.|.-..+-+|++.-... ....+.+..|.|||... +-.+++-||+|||.|++|+...|- +
T Consensus 3 ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~ 81 (144)
T 1eyh_A 3 YSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQ 81 (144)
T ss_dssp CCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHH
Confidence 4899999999999988888888888898876543 56788999999999984 889999999999999999887773 4
Q ss_pred hccHHH-HHHHHHh--hcCCCC--ChhHHHHHHHHHHHHhc
Q 041149 112 VASEKV-LDEMVRM--IENPQM--DPGNRSRALQLIRAWGE 147 (389)
Q Consensus 112 vas~~F-l~eL~kl--~~~~~~--~~~Vk~kiL~Li~~Wa~ 147 (389)
+.+.-+ +..|... +.+... ...||+|.-+++.--.+
T Consensus 82 ~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 82 CKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 433322 3333322 111111 24799998888866665
No 20
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00069 Score=54.39 Aligned_cols=73 Identities=7% Similarity=0.201 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhhC---CCCCCCchhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 041149 236 NSLDLLSSILNTE---TEPKPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAAV 311 (389)
Q Consensus 236 ~n~~LL~emL~~~---~~~~~~~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~~~~ 311 (389)
.|+.+|...++.. .++....++-+++||.++-.+||||.+.+..... =.++|+++|+.|+.+..-||++....
T Consensus 9 d~I~lF~~lv~~~k~~~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~---K~~~L~~mn~Kls~a~rlYD~lLE~~ 84 (91)
T 2pjw_V 9 DSIYMFASLVEKMKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQ---KYNTLIEMNGKISEIMNIYDRLLEQQ 84 (91)
T ss_dssp HHHHHHHHHHHHHHTCSCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655543 3445567788999999999999999999987543 34578999999999999999998754
No 21
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.40 E-value=0.0012 Score=57.79 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=81.1
Q ss_pred CChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcCCcchh-
Q 041149 35 PTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISG---KSVVSQRLSLDLLEACAMNCEKVFS- 110 (389)
Q Consensus 35 ~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~---~n~~vql~AL~LLe~cVkNCG~~F~- 110 (389)
-|+++..|..||+...-.|.-..+-+|++.--. ...-.+.+..|.|||.. ++-..++-||+|||.|++|+...|-
T Consensus 9 ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~ 87 (150)
T 3onk_A 9 YTEMEGKVREATNNEPWGASSTLMDQISQGTYN-FREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFID 87 (150)
T ss_dssp CCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999977777777777788776443 24567899999999975 3899999999999999999888773
Q ss_pred hhccHHHH-HHHHHh--hcCCC--CChhHHHHHHHHHHHHhcC
Q 041149 111 EVASEKVL-DEMVRM--IENPQ--MDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 111 evas~~Fl-~eL~kl--~~~~~--~~~~Vk~kiL~Li~~Wa~~ 148 (389)
++-+..++ ..|... +.+.. .-..||+|+.+++.-..+.
T Consensus 88 ~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~ 130 (150)
T 3onk_A 88 DTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDD 130 (150)
T ss_dssp HHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCH
Confidence 55443332 222210 00111 1247999988888777663
No 22
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.00055 Score=54.62 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=58.7
Q ss_pred HhHHHHHHHHHhhCCC-C---CCCchhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 041149 235 RNSLDLLSSILNTETE-P---KPIKEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEAA 310 (389)
Q Consensus 235 k~n~~LL~emL~~~~~-~---~~~~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~~~ 310 (389)
..|+.-|-++|...+| + +..+++-+++||.+|-.+||+|.++|......- ++|+.+|+.|.++-.-|+.+...
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk---~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK---EDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678788888887655 2 223667789999999999999999998654322 47899999999999999999853
No 23
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=96.43 E-value=0.0095 Score=50.30 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=75.5
Q ss_pred ChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccH
Q 041149 36 TPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASE 115 (389)
Q Consensus 36 s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~ 115 (389)
..+++.+...|+ --..|-.+...+-.....+.+.+..|.++|+.-.+..-+..|-|++.+++||+..+...-..
T Consensus 8 ~~l~~~L~~L~~------s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~ 81 (132)
T 4flb_A 8 SSLDRKFQSVTN------TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRE 81 (132)
T ss_dssp HHHHHHHHHCCS------SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHH
T ss_pred HHHHHHHHHCcc------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHH
Confidence 445566665542 22345555555444555789999999999999999999999999999999998876433333
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 116 KVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 116 ~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.|-..|..++.. -.++.+++++..++..|.+.
T Consensus 82 ~f~~~l~~~~~~-~~~~~~~~kl~~ll~iW~~r 113 (132)
T 4flb_A 82 SFADVLPEAAAL-VKDPSVSKSVERIFKIWEDR 113 (132)
T ss_dssp HHHTTHHHHHHT-TCSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHhccC
Confidence 455555555543 23567899999999999985
No 24
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.12 E-value=0.008 Score=52.03 Aligned_cols=95 Identities=9% Similarity=0.180 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhh---hccHHHHHHHHHhhcC
Q 041149 51 EEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSE---VASEKVLDEMVRMIEN 127 (389)
Q Consensus 51 ~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~e---vas~~Fl~eL~kl~~~ 127 (389)
..+-+..+-.+|. .....++..+..|.++|+.-.|..-+-+|-|+|..++|++..+.+ .-...|...|.+++..
T Consensus 22 S~~~I~~LT~~a~---~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~ 98 (145)
T 3d9j_A 22 SKAKMTQITKAAI---KAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQN 98 (145)
T ss_dssp CHHHHHHHHHHHH---HTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHH
Confidence 3334444444444 333468899999999999988888999999999999999984421 1123466666666542
Q ss_pred -CCCChhHHHHHHHHHHHHhcC
Q 041149 128 -PQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 128 -~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
-..++.+|.|+..|+..|...
T Consensus 99 ~~~~~~~~r~kl~rLl~iW~~r 120 (145)
T 3d9j_A 99 LYRCPGDDKSKIVRVLNLWQKN 120 (145)
T ss_dssp HTSSCGGGHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhcCC
Confidence 123478999999999999986
No 25
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=94.96 E-value=0.097 Score=50.41 Aligned_cols=75 Identities=16% Similarity=-0.003 Sum_probs=67.4
Q ss_pred CChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch
Q 041149 35 PTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF 109 (389)
Q Consensus 35 ~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F 109 (389)
.+.++..|-|||+.....|+-..+-+|....+.......+.+++|.+|++..|..|++-||.|+.-|+.-+.+.|
T Consensus 21 ~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~ 95 (299)
T 1hx8_A 21 GQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERF 95 (299)
T ss_dssp -CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHH
Confidence 468999999999999999999999999888887766778999999999999999999999999999999977666
No 26
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=94.44 E-value=0.12 Score=49.11 Aligned_cols=74 Identities=16% Similarity=0.059 Sum_probs=66.6
Q ss_pred ChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch
Q 041149 36 TPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF 109 (389)
Q Consensus 36 s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F 109 (389)
+.++..|-+||+.....|+-..+-+|.-..........+.+++|.+||+.+|..|++-||.++.-|+..+.+.|
T Consensus 27 s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~~ 100 (271)
T 3zyl_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (271)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 78999999999998888999988888877777666778999999999999999999999999999999876655
No 27
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=94.25 E-value=0.14 Score=49.72 Aligned_cols=74 Identities=16% Similarity=0.059 Sum_probs=66.4
Q ss_pred ChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch
Q 041149 36 TPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF 109 (389)
Q Consensus 36 s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F 109 (389)
+.++..|-+||+.....|+-..+-+|............+.+++|.+||..+|..|++-||.++.-|+..+.+.|
T Consensus 27 s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~ 100 (310)
T 3zym_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (310)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 78999999999999899999998888877776666678999999999999999999999999999999876555
No 28
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=93.40 E-value=0.046 Score=46.08 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=66.6
Q ss_pred hHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc---chhhhc
Q 041149 37 PESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEK---VFSEVA 113 (389)
Q Consensus 37 ~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~---~F~eva 113 (389)
.|.+.+...|+ ..+- |-.+...+-.....+.+.+..|.++|+...+..-+..|-|++.+++||.. .|..
T Consensus 8 ~l~~~L~~L~~---s~~s---I~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~-- 79 (135)
T 4fu3_A 8 ALEKKLSELSN---SQQS---VQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTR-- 79 (135)
T ss_dssp HHHHHHHHCCS---STTH---HHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHH--
T ss_pred HHHHHHHHccc---cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHH--
Confidence 45666666653 2233 44444444444457899999999999987777889999999999999943 4431
Q ss_pred cHHHHHHHHHhhcC--CCCChhHHHHHHHHHHHHhcC
Q 041149 114 SEKVLDEMVRMIEN--PQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 114 s~~Fl~eL~kl~~~--~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.|-..|..++.. ...++.+|+++..++..|.+.
T Consensus 80 --~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 80 --EFESVLVDAFSHVAREADEGCKKPLERLLNIWQER 114 (135)
T ss_dssp --HHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 122222222211 122346788999999999986
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.20 E-value=1.7 Score=39.07 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCChH----HHHHHHHhHhcCC----CcHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHH
Q 041149 52 EPNWG----MNMRICALINSEE----FSGSEIVKAIKKKI-SGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMV 122 (389)
Q Consensus 52 ~~Dw~----~ileicD~In~~~----~~~keA~raIrKrL-~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~ 122 (389)
+.||. .+..|+.+++..+ ..-.+.+.+|+++| +..|++|...|+..|..+.+..|..|.. --..|+..|.
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~~ilp~ll 104 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YASACVPSLL 104 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHH
Confidence 46885 6778888887621 23468899999999 4999999999999999999998888843 2345788888
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 123 RMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 123 kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
+.+.+ ....||+.+...+..+...
T Consensus 105 ~~l~d--~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 105 EKFKE--KKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HGGGC--CCHHHHHHHHHHHHHHHTT
T ss_pred HHHcC--CCHHHHHHHHHHHHHHHHc
Confidence 88775 4568999999999999875
No 30
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=91.09 E-value=0.69 Score=39.44 Aligned_cols=90 Identities=6% Similarity=0.033 Sum_probs=62.3
Q ss_pred HHHHHHhHhcCCCcHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcC--CCCCh
Q 041149 58 NMRICALINSEEFSGSEIVKAIKKKISGK--SVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIEN--PQMDP 132 (389)
Q Consensus 58 ileicD~In~~~~~~keA~raIrKrL~~~--n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~--~~~~~ 132 (389)
|-.+..-+-.....+++.+..+.++|... ++.-.+.-|-|++-++.||-.... ++ ...|-..|..++.. ...++
T Consensus 22 Iq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f-~~~F~~~L~~~~~~~~~~~~~ 100 (142)
T 2km4_A 22 ISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQF-QDSFGKVAAEVLGRINQEFPR 100 (142)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHH-HHHHHHTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHH-HHHHHHHHHHHHHHHHHcCCH
Confidence 33444444444557899999999999986 788889999999999999975442 21 11222222222221 12578
Q ss_pred hHHHHHHHHHHHHhcC
Q 041149 133 GNRSRALQLIRAWGES 148 (389)
Q Consensus 133 ~Vk~kiL~Li~~Wa~~ 148 (389)
.++.|+..+|.-|.+.
T Consensus 101 ~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 101 DLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999986
No 31
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=89.91 E-value=1.9 Score=34.57 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=53.3
Q ss_pred HHHHHHhHHHHH-HHHHhhCCCCCCC-chhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHH
Q 041149 230 FLVVTRNSLDLL-SSILNTETEPKPI-KEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEEL 307 (389)
Q Consensus 230 eLe~vk~n~~LL-~emL~~~~~~~~~-~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~ 307 (389)
-+...++.+.+| |-|-++...|.+. .|..++.||.+.-.|+++++++|++ . |+--...=.+.|.|..+=+--..+
T Consensus 5 f~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~-~--ee~R~~yE~LQDkL~qi~eAR~AL 81 (98)
T 3f1i_H 5 FLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQ-L--DERRLYYEGLQDKLAQIRDARGAL 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888877 4466666556555 4556999999999999999999986 2 333445566778887765544433
No 32
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=87.87 E-value=2.3 Score=39.96 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC--C
Q 041149 72 GSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES--E 149 (389)
Q Consensus 72 ~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~--~ 149 (389)
.++++..|.+-|..+|+.++++||.+|+-+.|-....-...--+++++.++++++ ..+..|.=+.+.++...=.. -
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCCB
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCCC
Confidence 4568889999999999999999999999999998777766666889999999985 46678888888888777776 3
Q ss_pred CCCCchHHHHHHHHHhhCC
Q 041149 150 DLAYLPVYRQTYMSLKERS 168 (389)
Q Consensus 150 ~~~~l~~i~~~Y~~Lk~~G 168 (389)
+..+|.++.++...+-+.|
T Consensus 109 ~~~~y~Kl~~aL~dlik~~ 127 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESP 127 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHhcCC
Confidence 4456777777777766654
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.22 E-value=2.7 Score=38.60 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcc---hhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 72 GSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKV---FSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 72 ~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~---F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
....+..|..-|+++|+.+...+|..|..|+.+++.. |.......++..|.+++.+ ++..||....+.+-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D--~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND--TQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Confidence 4577778888889999999999999999999999853 4332336788888998864 6789999988888665554
No 34
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=86.09 E-value=1.9 Score=37.74 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=62.1
Q ss_pred ChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhh-----------cc--HHHHHH
Q 041149 54 NWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEV-----------AS--EKVLDE 120 (389)
Q Consensus 54 Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~ev-----------as--~~Fl~e 120 (389)
--+.|-.|..+.-..-...+-.+..|.+-++.-.+.-=+=+|-|+|+.|+||-+.|... +. ++|-+-
T Consensus 21 S~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~ 100 (157)
T 3clj_A 21 SGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEV 100 (157)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHH
Confidence 33445555555544444567788889999998778888999999999999976544211 10 122222
Q ss_pred HHHhhcC--CCCChhHHHHHHHHHHHHhcC
Q 041149 121 MVRMIEN--PQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 121 L~kl~~~--~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
+..++.+ ...++..|+||..||..|...
T Consensus 101 i~~l~~~~~~~~~~~~k~Ki~klldiW~k~ 130 (157)
T 3clj_A 101 IQELLSDAIAKSNQDHKEKIRMLLDIWDRS 130 (157)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Confidence 2222211 134678999999999999974
No 35
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=84.73 E-value=6.9 Score=35.81 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=70.4
Q ss_pred CCCChH----HHHHHHH-hHhcCC-----Cc-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCC-cchh-hhccHH
Q 041149 51 EEPNWG----MNMRICA-LINSEE-----FS-GSEIVKAIKKKI-SGKSVVSQRLSLDLLEACAMNCE-KVFS-EVASEK 116 (389)
Q Consensus 51 ~~~Dw~----~ileicD-~In~~~-----~~-~keA~raIrKrL-~~~n~~vql~AL~LLe~cVkNCG-~~F~-evas~~ 116 (389)
.+.+|. ...+|.. .++..+ .+ -.+.++.|++.| +..|+.++..|+..|..+.+..+ ..|. ..+. .
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~ 104 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-L 104 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-H
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-H
Confidence 456887 5556777 665422 12 257899999999 79999999999999999998888 7775 3322 3
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 117 VLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 117 Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
++..|...+.+ ....|++.+...+..|...
T Consensus 105 llp~ll~~l~d--kk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 105 VFTPLLDRTKE--KKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp HHHHHHHGGGC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHHH
Confidence 56666666654 3368999999999999885
No 36
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=84.26 E-value=2.9 Score=38.54 Aligned_cols=74 Identities=12% Similarity=0.010 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch-h-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 041149 71 SGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF-S-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWG 146 (389)
Q Consensus 71 ~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F-~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa 146 (389)
....++..|..-++++||++..-+|..|..|+.+.|... . .-.-..++..+.+++. ..+..||+-.+.++..-+
T Consensus 136 ~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~--d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 136 SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG--HGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHT--CSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHH
Confidence 345677888888999999999999999999999977533 1 1112335556677775 477899998888774433
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=81.16 E-value=4.8 Score=34.49 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWG 146 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa 146 (389)
++..|.+-|.+.++.++..|+..|-.+..+.......+....++..|++++.. .+..|++.++..|...+
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHh
Confidence 57888888999999999999999999988643333467777899999999974 56789999999887654
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=80.36 E-value=16 Score=32.35 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcc--hhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 71 SGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKV--FSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 71 ~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~--F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
+....+..|...|+++|+.+...++..|..|+.+++.. |.... ..++..|.+++.+ ...+||....+.+..-+.
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNE--PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999998753 33222 3788888888864 567899988887755443
No 39
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=75.03 E-value=8.3 Score=35.35 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-h----hccHHHHHHHH-HhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-E----VASEKVLDEMV-RMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-e----vas~~Fl~eL~-kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
....|+|.+...|..++..+|.+|..++.++|..+. . ..-..++..|+ |.+. .....++...++.+..|...
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999987552 1 12233555544 3343 35567899999999888875
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=74.18 E-value=21 Score=30.91 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
++..|..-|.+.++.++..|+..|..+..........+....++..|.+++.. .+..|+..++..|..-...
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS--TDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC--CcHHHHHHHHHHHHHHHcC
Confidence 77888999999999999999999998886432223467778899999999974 4668999998888776665
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=73.44 E-value=11 Score=32.77 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+-|++.++.++..|+..|-.+..+....-..+.....+..|++++.. .+..|+..++..|.....
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIAS 115 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHc
Confidence 468888999999999999999999999887643322367777899999999974 567899999999988875
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=71.44 E-value=16 Score=31.11 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|.+-|.+.++.++..|+..|..+..+.......+....++..|++++.. .+..|+..++..|.....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIAS 167 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHHc
Confidence 56788889999999999999999998887544444466777899999999975 467899998888866655
No 43
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=66.17 E-value=21 Score=33.47 Aligned_cols=95 Identities=6% Similarity=0.006 Sum_probs=64.9
Q ss_pred CCCChHHHHHHHHhHhcCCC-cHHHHHH-------HHHHHhcCCCHHHHHHHHHHHHHHHhcC---CcchhhhccHHHHH
Q 041149 51 EEPNWGMNMRICALINSEEF-SGSEIVK-------AIKKKISGKSVVSQRLSLDLLEACAMNC---EKVFSEVASEKVLD 119 (389)
Q Consensus 51 ~~~Dw~~ileicD~In~~~~-~~keA~r-------aIrKrL~~~n~~vql~AL~LLe~cVkNC---G~~F~evas~~Fl~ 119 (389)
-..||...++-+|.+...-. .+++++. .+.-|+.+.|+++.+.+|.+|..++.-- |+.|++.-..-|+-
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 55699988877777765432 3445433 3355888999999999999999987655 44554332334777
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 120 EMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 120 eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.|+.-+.+ ....||+++.+++..-..
T Consensus 136 ~LveKlGd--~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 136 YLLLKTGE--AKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHHHGGGC--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--ChHHHHHHHHHHHHHHHH
Confidence 77766643 556899999888865544
No 44
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=66.04 E-value=12 Score=32.83 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|.+-|.+.++.++..|+..|-.+..+.......+....++..|+.++.. .+..|+..++..|..-..
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhc
Confidence 67788888999999999999999999887654333456777899999999985 377899999888876654
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=65.40 E-value=16 Score=34.45 Aligned_cols=71 Identities=8% Similarity=0.071 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch-hhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF-SEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F-~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+-|+++++.++..|..+|-.+..+ ...+ ..|....++..|+.++.. .+..|++.++..|..-..
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHHh
Confidence 3566788888899999999999999998887 3444 467888899999999975 356899999988865554
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=65.24 E-value=17 Score=31.88 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|.+-|.+.++.++..|+..|-.+..+.......+.....+..|++++.. .+..|+..++..|.....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHc
Confidence 67888899999999999999999999977654444567777899999999975 467899999888877665
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.93 E-value=40 Score=28.44 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWG 146 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa 146 (389)
+++..|.+.|.+.++.+...|+..|..+ +..+.+..|.+++.+ .+..||..++..+..+.
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~-----------~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQI-----------GDERAVEPLIKALKD--EDWFVRIAAAFALGEIG 135 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH-----------CCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC
Confidence 3444444444445555444444444321 222344445555532 34455555555554443
No 48
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=60.82 E-value=32 Score=31.73 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=63.3
Q ss_pred hHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhc---cHHHHHHHHHhhcCCCC
Q 041149 55 WGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVA---SEKVLDEMVRMIENPQM 130 (389)
Q Consensus 55 w~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-eva---s~~Fl~eL~kl~~~~~~ 130 (389)
.+.+.=||++.+..-...+-+...|++-|.+++.. .+.+|=.++++||..+. ..+ -..+++.|..++..+..
T Consensus 147 lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~l 222 (260)
T 1hu3_A 147 IGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKT 222 (260)
T ss_dssp HHHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSS
T ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCC
Confidence 36666799999988777887778888878877765 56666677777899874 333 24477778887777777
Q ss_pred ChhHHHHHHHHHHH
Q 041149 131 DPGNRSRALQLIRA 144 (389)
Q Consensus 131 ~~~Vk~kiL~Li~~ 144 (389)
+..||-.|..++.-
T Consensus 223 s~Rirfmi~~l~dL 236 (260)
T 1hu3_A 223 SSRIRFMLQDVIDL 236 (260)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888743
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.52 E-value=52 Score=27.95 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=30.7
Q ss_pred CChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041149 35 PTPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLE 99 (389)
Q Consensus 35 ~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe 99 (389)
+..+..++.... ++||..=...+..+..- +..+++..|.+.|.+.++.+...|+..|.
T Consensus 18 ~~~~~~L~~~L~-----~~~~~vR~~A~~~L~~~--~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 75 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-----DDSYYVRRAAAYALGKI--GDERAVEPLIKALKDEDAWVRRAAADALG 75 (211)
T ss_dssp GGGHHHHHHHTT-----CSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHc-----CCCHHHHHHHHHHHHHh--CCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344555555432 34555544444444433 22355666666666666666666665553
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=53.96 E-value=39 Score=33.25 Aligned_cols=70 Identities=6% Similarity=-0.016 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
...+..|.+.+.+.+++|...++..|..+++..|..|. ...|+..|.+++. ..+..||..+.+.+.....
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKLTQ--DQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHHHHHHHHcC--CCchhHHHHHHHHHHHhhc
Confidence 35667788888999999999999999999999987653 2467777777654 3577899988888765543
No 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=53.84 E-value=36 Score=34.94 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+-|++.++.++..|+..|-.+..+.......+.....+..|++++..+ +.+++..++..|..|+.
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY 169 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC--CHHHHHHHHHHHHHHHh
Confidence 3567788888999999999999999998887644445677778999999999863 45788888888888885
No 52
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=53.84 E-value=43 Score=32.63 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.++..|.+-|++.++.++..|+..|-.+..+....-..+.....+..|++++.. .+.+|+..+...+..|+..
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhC
Confidence 356778888999999999999999988887654333456677889999999975 4568888888888888863
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.52 E-value=53 Score=27.63 Aligned_cols=82 Identities=10% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCC
Q 041149 51 EEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQM 130 (389)
Q Consensus 51 ~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~ 130 (389)
.++|+..-...+..+..- +..+++..|.+.|.+.++.|...|+..|..+ +..+.+..|..++.+ .
T Consensus 86 ~d~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-----------~~~~~~~~L~~~l~d--~ 150 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQI--GDERAVEPLIKALKDEDWFVRIAAAFALGEI-----------GDERAVEPLIKALKD--E 150 (201)
T ss_dssp TCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-----------TCGGGHHHHHHHTTC--S
T ss_pred cCCCHHHHHHHHHHHHHh--CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHcC--C
Confidence 456776666666665543 2345788888889999999999998877654 234556677777754 3
Q ss_pred ChhHHHHHHHHHHHHhc
Q 041149 131 DPGNRSRALQLIRAWGE 147 (389)
Q Consensus 131 ~~~Vk~kiL~Li~~Wa~ 147 (389)
+..||..++..|..+..
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 56777777777766643
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.83 E-value=44 Score=28.41 Aligned_cols=81 Identities=10% Similarity=0.143 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCC
Q 041149 51 EEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQM 130 (389)
Q Consensus 51 ~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~ 130 (389)
.++|+..-...+..+..- +..+++..|.+.|.+.++.|...|+..|..+ +..+.+..|.+++.+ .
T Consensus 91 ~~~~~~vr~~a~~aL~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-----------~~~~~~~~L~~~l~d--~ 155 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQI--GDERAVEPLIKALKDEDWFVRIAAAFALGEI-----------GDERAVEPLIKALKD--E 155 (211)
T ss_dssp TCSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-----------CCGGGHHHHHHHTTC--S
T ss_pred cCCCHHHHHHHHHHHHHh--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHcC--C
Confidence 456776666666666543 2345778888888889999988888777654 123345556666643 3
Q ss_pred ChhHHHHHHHHHHHHh
Q 041149 131 DPGNRSRALQLIRAWG 146 (389)
Q Consensus 131 ~~~Vk~kiL~Li~~Wa 146 (389)
+..||..++..|..+.
T Consensus 156 ~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 156 DGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 4566666666555553
No 55
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=51.52 E-value=55 Score=30.99 Aligned_cols=71 Identities=6% Similarity=0.035 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|.+-|.+.++.++..|+..|..+..++......+.....+..|.+++.. .+..||..++..|...+.
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITA 305 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHc
Confidence 56778888889999999999999999988765444456666789999999975 367899999888877664
No 56
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=51.43 E-value=69 Score=25.29 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCC
Q 041149 52 EPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMD 131 (389)
Q Consensus 52 ~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~ 131 (389)
++||..-...+..+-.- +...++..|.+.|.+.++.|...|+..|..+ +..+.+..|.+++.+ .+
T Consensus 53 d~~~~vR~~A~~aL~~~--~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~-----------~~~~a~~~L~~~l~d--~~ 117 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNF--QDERAVEPLIKLLEDDSGFVRSGAARSLEQI-----------GGERVRAAMEKLAET--GT 117 (131)
T ss_dssp CSCHHHHHHHHHHHGGG--CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH-----------CSHHHHHHHHHHTTS--CC
T ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHhC--CC
Confidence 46777666666666554 3467888888888888888888887766543 345677888888853 45
Q ss_pred hhHHHHHHHHH
Q 041149 132 PGNRSRALQLI 142 (389)
Q Consensus 132 ~~Vk~kiL~Li 142 (389)
..||..+...|
T Consensus 118 ~~vr~~A~~aL 128 (131)
T 1te4_A 118 GFARKVAVNYL 128 (131)
T ss_dssp THHHHHHHHHG
T ss_pred HHHHHHHHHHH
Confidence 57887766544
No 57
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=51.00 E-value=80 Score=24.11 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=48.0
Q ss_pred HHHHHHhhCCCCCCC-chhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041149 240 LLSSILNTETEPKPI-KEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELEA 309 (389)
Q Consensus 240 LL~emL~~~~~~~~~-~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~~ 309 (389)
-+=.+|....|.... +..-+-+|=..|-+|-+.|=.=++.+ +.--.+|=++|.++..+|..|..++.
T Consensus 9 ~~L~~l~~aDP~~~~~D~~el~~LE~~c~~MgplId~kLE~i---Drkh~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 9 QLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDI---DRKHSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHTCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566667675543 33346889999999999886555542 12245788999999999999999873
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=50.79 E-value=63 Score=30.57 Aligned_cols=74 Identities=7% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcC-CcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 73 SEIVKAIKKKISGK--SVVSQRLSLDLLEACAMNC-EKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 73 keA~raIrKrL~~~--n~~vql~AL~LLe~cVkNC-G~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.+.+..|...+.+. ++.+...||..|..+++.+ +..|..+. ..++..+..++.....+..||..++..+..|..
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 57888888889988 9999999999999999988 44443322 247777888887643367899999999988764
No 59
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=48.87 E-value=58 Score=30.82 Aligned_cols=72 Identities=7% Similarity=0.086 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+-|.+.++.+...|+..|-.+...+......+....++..|+.++.. .+..||..++..|.....
T Consensus 276 ~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT--AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHc
Confidence 367788888999999999999999988887554333456666889999999874 457899988887766654
No 60
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=48.25 E-value=1e+02 Score=31.32 Aligned_cols=52 Identities=6% Similarity=0.022 Sum_probs=40.7
Q ss_pred hHHHHHHHHhHhcCCCcHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Q 041149 55 WGMNMRICALINSEEFSGS--EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCE 106 (389)
Q Consensus 55 w~~ileicD~In~~~~~~k--eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG 106 (389)
..+++.+..+.+..++... ..+..|.+.|.++++.|+..|+.+|..+..+..
T Consensus 139 k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 139 KTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 3456666666676666554 478999999999999999999999988877654
No 61
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=48.05 E-value=48 Score=35.26 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|.+-|++.++.++..|+..|-.|..+....-..+.....+..|++++.. .+..|+..++..+..|+.
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhc
Confidence 56667777888999999999999998887754433355566788899999975 456888999999999985
No 62
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=47.94 E-value=80 Score=31.06 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.++..|.+-|.+.++.++..|+..|-.+..++ ..+. .+.....+..|+.++.. ..+..|+..++..|......
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~-~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNE-HTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCT-TCCHHHHHHHHHHHHHHHCS
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcC
Confidence 36778888899999999999999998887653 2333 56666788889999854 45678888888888777665
No 63
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=47.45 E-value=39 Score=33.48 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|..-|.+.++.++..|+..|-.++.+++...+.+....++..|..++..+ +..|+..++..|..++.
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITA 370 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 3466778888899999999999999988876655445566667999999999753 67899999888887775
No 64
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=45.79 E-value=89 Score=30.71 Aligned_cols=72 Identities=7% Similarity=0.030 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|.+-|.+.++.++..|+..|-.++..+....+.+....++..|+.++.. ..+..|+..++..|...+.
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ-NLKKSIKKEACWTISNITA 358 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC-CCcHHHHHHHHHHHHHHHC
Confidence 46688888999999999999999999987654444567778899999999985 3267899988888776664
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=45.11 E-value=58 Score=33.91 Aligned_cols=75 Identities=11% Similarity=0.194 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
...+..|.+.|.+.++.+...|+.++..+++.+|..|.... ..++..|.+.+..+..+..||..++..+..-...
T Consensus 638 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 34667788888888999999999999999999998775332 4567777777776445578999888888666654
No 66
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=44.99 E-value=97 Score=30.09 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=95.8
Q ss_pred hhhhhhhhhhcccccccccccchhhhhcCC-CChH---------HHHHHHHcCCCCCCCChHHHHH----HHHhHhcC-C
Q 041149 5 KLTQLGERIKTGGAQMGRIVSGKVKEMLQA-PTPE---------SKMVDEATLETLEEPNWGMNMR----ICALINSE-E 69 (389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~s~~---------~~lIekATs~~l~~~Dw~~ile----icD~In~~-~ 69 (389)
+.-+.=++|.-+..+..|...++.+.+|+. .+=+ ..||.-.... ...-.+.++. |-+.+..- .
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccc
Confidence 344555788888888899999999998874 3322 3333333221 1111122221 11111000 0
Q ss_pred -CcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh----hhc---cH---HHHHHHHHhhc-CCCCChhHHHH
Q 041149 70 -FSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS----EVA---SE---KVLDEMVRMIE-NPQMDPGNRSR 137 (389)
Q Consensus 70 -~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~----eva---s~---~Fl~eL~kl~~-~~~~~~~Vk~k 137 (389)
..-.+.++-|..-+.+.+..|+-.||.||..+|.++..-|. +|- .. ..+..|++++. ....+.+++-.
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 01345677777777889999999999999999999955443 222 11 13667777775 23578888888
Q ss_pred HHHHHHHHhc-CCCCCCchHHHHHHHHHhhCCC
Q 041149 138 ALQLIRAWGE-SEDLAYLPVYRQTYMSLKERSV 169 (389)
Q Consensus 138 iL~Li~~Wa~-~~~~~~l~~i~~~Y~~Lk~~Gv 169 (389)
.+.||..-=. +.+. ..+.++-..|..+|+
T Consensus 277 amtLIN~lL~~apd~---d~~~di~d~Le~~gi 306 (339)
T 3dad_A 277 TVTLINKTLAALPDQ---DSFYDVTDALEQQGM 306 (339)
T ss_dssp HHHHHHHHHHHCSSH---HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhcCCCh---hHHHHHHHHHHHccH
Confidence 8888854333 2322 235666667777775
No 67
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=44.94 E-value=35 Score=32.03 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=55.1
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKK-KISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrK-rL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|.+ -|.++++.++..|+.+|-.++.|. +.++ .|.....+.-|+++++. ..+..|+.+++..|-....
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~-~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDR-DACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHc
Confidence 5667777 788999999999999999999884 3444 56677789999999974 2357889888777765543
No 68
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=43.43 E-value=67 Score=33.05 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=56.4
Q ss_pred ChHHHHHHHHhHhcCCCcH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCC
Q 041149 54 NWGMNMRICALINSEEFSG---SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQM 130 (389)
Q Consensus 54 Dw~~ileicD~In~~~~~~---keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~ 130 (389)
+.+...+.+..|-.-...+ ..|+..|.+-|.++++++++.||..|..++......|. ++...+...+.+ .
T Consensus 290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d--~ 362 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKD--L 362 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGS--S
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccC--C
Confidence 3344555444443322222 24778888889999999999999999888876443332 244455566553 4
Q ss_pred ChhHHHHHHHHHHHHhcC
Q 041149 131 DPGNRSRALQLIRAWGES 148 (389)
Q Consensus 131 ~~~Vk~kiL~Li~~Wa~~ 148 (389)
+..||.+.++++......
T Consensus 363 d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNG 380 (618)
T ss_dssp CHHHHHHHHHHHHHHCCS
T ss_pred ChhHHHHHHHHHHHHccc
Confidence 567788888877776654
No 69
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=43.31 E-value=73 Score=32.61 Aligned_cols=73 Identities=10% Similarity=0.126 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+.|++.++.++..|+..|-.+..+...+...+.....+..|++++.. ..+..|+...+..|.....
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhc
Confidence 457788888889999999999999999988764322234455788889999875 3467788887777766543
No 70
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=42.80 E-value=1.3e+02 Score=28.19 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-chhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEK-VFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~-~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
...+..|...|.+.++.+..-|+..|..+...|.. .+.... ..++..|...+.+ .++.||..++..|......
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh
Confidence 45677888889999999999999999999998874 444222 4588888888875 4578999988888777664
No 71
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=41.43 E-value=35 Score=36.11 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=77.2
Q ss_pred HHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhc-cHHHHHHHHHhhcCCCCChhHHH
Q 041149 59 MRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVA-SEKVLDEMVRMIENPQMDPGNRS 136 (389)
Q Consensus 59 leicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-eva-s~~Fl~eL~kl~~~~~~~~~Vk~ 136 (389)
+.++|.+-++ .+.+..|..-|...+.++-++|+.+|.++..|.+...+ .|. ...=+..|+.++.+ ....||.
T Consensus 111 ~~~~d~f~~~----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d--~rE~iRn 184 (651)
T 3grl_A 111 SQFTEIFIKQ----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD--SREVIRN 184 (651)
T ss_dssp HHHHHHHHHS----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC--SSHHHHH
T ss_pred HHHHHHHHcC----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC--chHHHHH
Confidence 5566665544 36677888889999999999999999999999999886 454 44678889999975 3468999
Q ss_pred HHHHHHHHHhcC-CCCCC---c-hHHHHHHHHHhhCCC
Q 041149 137 RALQLIRAWGES-EDLAY---L-PVYRQTYMSLKERSV 169 (389)
Q Consensus 137 kiL~Li~~Wa~~-~~~~~---l-~~i~~~Y~~Lk~~Gv 169 (389)
..+.+|..-... .+... | ..|-.+++.++.+|.
T Consensus 185 eallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~ 222 (651)
T 3grl_A 185 DGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN 222 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC
Confidence 999999888876 21100 1 234555666777774
No 72
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=41.05 E-value=37 Score=27.84 Aligned_cols=34 Identities=6% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 115 EKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 115 ~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
++||..|+++.++....++|-++|..||+..-++
T Consensus 23 k~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~~ 56 (114)
T 2p6v_A 23 XNFLSTLIXLASSGXQSTETAANVXELVQNLLDG 56 (114)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccChHHHHHHHHHHHHHHHc
Confidence 5699999999987667788889999999888886
No 73
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=41.00 E-value=87 Score=33.05 Aligned_cols=125 Identities=8% Similarity=0.058 Sum_probs=80.9
Q ss_pred ccccchhhhhcCCCChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCC--c--HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 041149 22 RIVSGKVKEMLQAPTPESKMVDEATLETLEEPNWGMNMRICALINSEEF--S--GSEIVKAIKKKISGKSVVSQRLSLDL 97 (389)
Q Consensus 22 ~~~~~~~~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~--~--~keA~raIrKrL~~~n~~vql~AL~L 97 (389)
+.++.++..++... .+-.++-++......+.--..+.-++++++.-.. . -.+.+..|.+-|...++.+...|+..
T Consensus 615 ~~l~~~~~~~~~~~-~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~a 693 (852)
T 4fdd_A 615 EGLGGNIEQLVARS-NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWA 693 (852)
T ss_dssp HHHGGGGHHHHHTC-CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred HHHhHhHHHHhcCC-cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence 33455555555222 3444444444322211112333345555543322 1 24567788888888888998899999
Q ss_pred HHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 98 LEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 98 Le~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
+..++.+.|..|.... ..|+..|.+++.++..+..|++.+..+|..-...
T Consensus 694 lg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 694 IGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh
Confidence 9999999988886544 5899999999987777778999888888665553
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=39.95 E-value=85 Score=30.51 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=40.4
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHHhcCCc--chhhhc----cHHHHHHHHHhhcCCCCChhHHHH
Q 041149 78 AIKKKIS---GKSVVSQRLSLDLLEACAMNCEK--VFSEVA----SEKVLDEMVRMIENPQMDPGNRSR 137 (389)
Q Consensus 78 aIrKrL~---~~n~~vql~AL~LLe~cVkNCG~--~F~eva----s~~Fl~eL~kl~~~~~~~~~Vk~k 137 (389)
.|.+.|+ +.+..+|++|++|+..++.++.. .|..++ ...+-..+.+.++...++++.+++
T Consensus 258 ~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 258 NLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 4447787 68999999999999999999874 364332 222334455556655567665554
No 75
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=39.11 E-value=1.2e+02 Score=31.42 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 72 GSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 72 ~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
-+.|+..|.+-|.++++++++.||..|..++...+. +.+. .++...+...+.. ..+..||.+.|+++..-...
T Consensus 327 ~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~-~~~~~~i~~~L~~-d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV-KTHIETVINALKT-ERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH-HTTHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH-HHHHHHHHHHhcc-CCCHhHHHHHHHHHHHHcCh
Confidence 356788888888899999999999999998877542 1111 2344455555541 35578999999998776653
No 76
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=38.31 E-value=2.3e+02 Score=28.60 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 72 GSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 72 ~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
....+..|++-|.+++|.|...|...|-.+.+.+.... -...|++.|..++.+ .++.|+.-.+.++......
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d--~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIAD--SNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSC--SCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCC--CChhHHHHHHHHHHHHHhh
Confidence 44455567777778888887777776666666443322 124689999999974 5678999998888887765
No 77
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=37.54 E-value=1.3e+02 Score=27.87 Aligned_cols=83 Identities=8% Similarity=0.159 Sum_probs=55.0
Q ss_pred HHHHHHHhHhcCCCcHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhcCCcchh-hh------------ccHHHHH
Q 041149 57 MNMRICALINSEEFSGSEIVKAIKKKIS----GKSVVSQRLSLDLLEACAMNCEKVFS-EV------------ASEKVLD 119 (389)
Q Consensus 57 ~ileicD~In~~~~~~keA~raIrKrL~----~~n~~vql~AL~LLe~cVkNCG~~F~-ev------------as~~Fl~ 119 (389)
.+.=|+++.+..-...+-+...|++-|. .++.. .+..|=.++++||..+. .- .-..+++
T Consensus 176 ~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~----~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~ 251 (284)
T 2vso_E 176 LVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEE----TLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFG 251 (284)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHH
Confidence 4556888888877677766666666665 45544 46666666777898874 22 1223556
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHH
Q 041149 120 EMVRMIENPQMDPGNRSRALQLIR 143 (389)
Q Consensus 120 eL~kl~~~~~~~~~Vk~kiL~Li~ 143 (389)
.|.+++.++..+..||-.|..++.
T Consensus 252 ~l~~l~~~~~ls~RirFml~dlid 275 (284)
T 2vso_E 252 ILDNIIQTAKISSRIKFKLIDIKE 275 (284)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH
Confidence 666666667778888888887774
No 78
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=36.66 E-value=81 Score=30.63 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
..++..|.+-|++.++.++..|+..|-.+..+.......+.....+..|++++.. ..+..|+...+..|.....
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHc
Confidence 4468888888999999999999999999887643222234455788888888864 3467888888888877654
No 79
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=36.08 E-value=1.2e+02 Score=27.51 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCCCC---chhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHh
Q 041149 240 LLSSILNTETEPKPI---KEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNL 293 (389)
Q Consensus 240 LL~emL~~~~~~~~~---~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~ 293 (389)
-|..|+.+++-+..- -++.++++.+.|.+++.++++|+.+ |.+....++.+
T Consensus 49 AL~~MVanLT~gKkky~~~e~~~~~i~~~~~~l~~~ll~l~d~---D~~aF~~~~~A 102 (214)
T 1o5h_A 49 ALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKK---DMEAFEKVMKA 102 (214)
T ss_dssp HHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 477888888765542 3456899999999999999999974 55555555555
No 80
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=36.06 E-value=66 Score=31.82 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
..++..|.+-|.+.++.++..|+..|..+..+....+..+....++..|+.++.. .+..|+..++..|.....
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CChhhHHHHHHHHHHHHc
Confidence 3567888888999999999999999999998766556666667789999999974 457899888888866654
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=35.72 E-value=90 Score=29.12 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHH---HHHHHhhcCCCCChhHHHHHHHHHHH
Q 041149 71 SGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVL---DEMVRMIENPQMDPGNRSRALQLIRA 144 (389)
Q Consensus 71 ~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl---~eL~kl~~~~~~~~~Vk~kiL~Li~~ 144 (389)
.|.-....|..-++|+|.++-.-+|.+|..++.+.|..+ .+.+ ..+.+++.+ .+..||+-.+..+-.
T Consensus 164 ~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve 233 (266)
T 2of3_A 164 GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGD--KDVNVRNAAINVLVA 233 (266)
T ss_dssp CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 345555666667789999999999999999999999874 2245 888888875 667899988776643
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=35.05 E-value=98 Score=29.68 Aligned_cols=73 Identities=7% Similarity=0.057 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+-|.+.++.++..|...|-.+..+.+.... .|.....+..|++++.. ..+..+++.++..|...+.
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHHc
Confidence 3577888899999999999999999999876444454 67777789999997643 2456788888777755544
No 83
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=33.08 E-value=97 Score=31.83 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=31.1
Q ss_pred HHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 041149 57 MNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEAC 101 (389)
Q Consensus 57 ~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~c 101 (389)
..+.++.+.+.+++-..-++..|+|-|+++|+.+..+||..|-.+
T Consensus 90 ~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i 134 (618)
T 1w63_A 90 GYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCM 134 (618)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhc
Confidence 344555555555444566788888888888888888887766443
No 84
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=33.02 E-value=97 Score=30.86 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
..++..|.+-|.+.++.++..|+..|-.|..++....+.|.....+..|+.++.. .+..|+..++..|.....
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHc
Confidence 5678889999999999999999999999988765555567777889999999974 567889888888876654
No 85
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=32.29 E-value=1.1e+02 Score=27.68 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+-|.+.++.+|..|...|-.+...+ .... .|.....+..|++++.. ..+..|++.+...|...+.
T Consensus 52 G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 52 RGILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHc
Confidence 35788899999999999999999999998742 2333 67777889999999974 3456889888877765554
No 86
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=31.95 E-value=1.5e+02 Score=29.47 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
..++..|.+-|.+.++.++..|+..|-.|..++......|.....+..|+.++.. .+..|+..++..|.....
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhc
Confidence 5678889999999999999999999998887765555567777889999999974 566888888888766543
No 87
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=30.45 E-value=1e+02 Score=32.73 Aligned_cols=74 Identities=9% Similarity=0.128 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 041149 72 GSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWG 146 (389)
Q Consensus 72 ~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa 146 (389)
+..++..|.+-|.+.++.++..|+..|-.+.++.......+....++..|++++.. ..+..||...+..|....
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls 221 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNLS 221 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 35677888888889999999999999998887643222223356789999998874 236678877776665543
No 88
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=30.16 E-value=1e+02 Score=28.00 Aligned_cols=70 Identities=3% Similarity=0.033 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 76 VKAIKKKISGKSV--VSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 76 ~raIrKrL~~~n~--~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
+..+.+.|.+.++ .+|..|...|-.+..+....-..|....-+..|+.+++. .+..||......|..++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s--~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV--QNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHh
Confidence 5667778888887 888777766655554332222367777778999999975 467899999999988876
No 89
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=29.58 E-value=40 Score=25.13 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHHhHHHHHHhhhcCCCHHHHHHHHHhhHHHHHHHHHHHHHH
Q 041149 255 KEDLTVSMLEKCKESQPVIQRIIESTTDDEAMLFEALNLHDELQLVISRYEELE 308 (389)
Q Consensus 255 ~ddli~EL~~~Cr~mq~rI~rli~~~~~dEe~L~eLL~~NDeL~~vl~rYe~~~ 308 (389)
.+.-+.||+.+.|..|..+.+-=+ .+|-+++..|++ |.++++||.-|....
T Consensus 12 ~~~elEel~sSLK~iq~~L~DsQS--QeDi~lllqL~~-~~DFQ~A~kIhNaVs 62 (72)
T 1vf6_C 12 QDPDVEDLFSSLKHIQHTLVDSQS--QEDISLLLQLVQ-NRDFQNAFKIHNAVT 62 (72)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSHHH--HHHHHHHHHHHH-CHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 344479999999998877754332 245566666554 888999999987664
No 90
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=29.50 E-value=1.1e+02 Score=30.06 Aligned_cols=69 Identities=9% Similarity=0.049 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 76 VKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 76 ~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
+..|.+.|++.++.++..|...|..+..+. .... .|.....+..|+++++. .++.|+......|..++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS--PNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS--SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhc
Confidence 456777888899999999998888876432 2333 67777889999999974 456788888888877765
No 91
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=29.16 E-value=1.9e+02 Score=28.74 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-cchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCE-KVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLI 142 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG-~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li 142 (389)
.+..|.+.|++.++.+|+.|+.-+..+..+.. +++.+|.....+..|++++.. ..++.++..+...|
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL 144 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWAL 144 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34555666666777777777766655544332 344556566666666766653 23344554444333
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=29.01 E-value=2.3e+02 Score=27.49 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 73 SEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 73 keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
...+..+.+.|.+.++.|...|+..|..+++.+|..|. ...++..|.+++.. .+..||...+..+......
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~~--~~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA---HATIIPKVLAMSGD--PNYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH---HHHTHHHHHHTTTC--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHh
Confidence 45677777888888888888888888888888877553 23456666666543 4457888887777666653
No 93
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=28.97 E-value=1e+02 Score=32.10 Aligned_cols=71 Identities=6% Similarity=-0.007 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAW 145 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~W 145 (389)
.++..|.+-|.+.++.+|..|...|-.+...++.... .|....-+..|+++++. ..+..|++.+...|...
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK-ARDMDLTEVITGTLWNL 161 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999886656664 67777888899999874 23456666665555333
No 94
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=28.55 E-value=1.7e+02 Score=30.39 Aligned_cols=76 Identities=8% Similarity=0.118 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCc-chhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 72 GSEIVKAIKKKISGK--SVVSQRLSLDLLEACAMNCEK-VFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 72 ~keA~raIrKrL~~~--n~~vql~AL~LLe~cVkNCG~-~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
-.+.+..|...+.+. ++.+...+|..|..+++.++. .|... ...++..+.+.+.++..+..||..++..+..|...
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 357888889999998 999999999999999988753 33321 23456667777765434678999999999888753
No 95
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=27.85 E-value=2.6e+02 Score=28.87 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCcch---hhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 73 SEIVKAIKKKISGK-SVVSQRLSLDLLEACAMNCEKVF---SEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 73 keA~raIrKrL~~~-n~~vql~AL~LLe~cVkNCG~~F---~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.+.+..|...+.+. ++++...|+.+|..+.+..+..+ .. ....++..+...+.++..+..||..++..+..|..
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 57888899999988 99999999999999998766542 21 12235555566666543467899999999888743
No 96
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=27.75 E-value=4.7e+02 Score=26.08 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=52.8
Q ss_pred ChHHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCC----------------------------
Q 041149 36 TPESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKS---------------------------- 87 (389)
Q Consensus 36 s~~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n---------------------------- 87 (389)
..+++||++.|+... .|-..+-.+--.-+ ....|.+.+..|..|.....
T Consensus 45 gTL~~LVe~Lt~~~~--~D~~f~~~FLlTyR-sF~tp~eLL~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (490)
T 2ii0_A 45 GTVIKLIERLTYHMY--ADPNFVRTFLTTYR-SFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKE 121 (490)
T ss_dssp ECHHHHHHHHTCSSS--CCHHHHHHHHHHGG-GTSCHHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHH
T ss_pred cCHHHHHHHHccCCC--CCHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHh
Confidence 458999999998754 34433333222222 33578888888888886532
Q ss_pred --HHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhc
Q 041149 88 --VVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIE 126 (389)
Q Consensus 88 --~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~ 126 (389)
..++++-+.+|..-|.+|...|.. +.+.+..|...+.
T Consensus 122 ~~~~iq~rV~~vl~~Wv~~~~~DF~~--d~~ll~~L~~F~~ 160 (490)
T 2ii0_A 122 YIQPVQLRVLNVCRHWVEHHFYDFER--DAYLLQRMEEFIG 160 (490)
T ss_dssp THHHHHHHHHHHHHHHHHHCTHHHHH--CHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHhCcccccc--CHHHHHHHHHHHH
Confidence 235677777888888887666631 2234444444443
No 97
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=27.02 E-value=2e+02 Score=30.16 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHhHhcCCCc--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHH
Q 041149 52 EPNWGMNMRICALINSEEFS--------GSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVR 123 (389)
Q Consensus 52 ~~Dw~~ileicD~In~~~~~--------~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~k 123 (389)
+++|..-...+..+..=..+ -..++..|.+.|++.++.|...|...|..+...++..++...-..++..|.+
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~ 449 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 45776555444443332222 2567888999999999999999988888777766543333333467777777
Q ss_pred hhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 124 MIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 124 l~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.+.+ .+..||..++..|......
T Consensus 450 ~L~d--~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 450 RILD--SNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHTC--SSHHHHHHHHHHHHHHHHH
T ss_pred HHhC--CCHHHHHHHHHHHHHHHHH
Confidence 7764 4678999999888888765
No 98
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=26.61 E-value=93 Score=32.16 Aligned_cols=52 Identities=8% Similarity=0.057 Sum_probs=34.9
Q ss_pred HHHHHHhHhcCCCcHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch
Q 041149 58 NMRICALINSEEFSGS--EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF 109 (389)
Q Consensus 58 ileicD~In~~~~~~k--eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F 109 (389)
++.+.-+.+..++... +.+..|.+-|..+|+.|+..|+.+|-.+..+-+..|
T Consensus 169 ~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 169 ALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 3444444444444333 567788888888999999999998877766544433
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.33 E-value=36 Score=33.17 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHhHhcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Q 041149 38 ESKMVDEATLETLEEPNWGMNMRICALINSEEFSGSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCE 106 (389)
Q Consensus 38 ~~~lIekATs~~l~~~Dw~~ileicD~In~~~~~~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG 106 (389)
+...|.++-.....-.--.+++.+.-++...++-.+..+..+..-+.++|+-|++.|+.+|-.+-++-+
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 444455554444433333445555555555544444455566667778999999999999988877643
No 100
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=25.06 E-value=1.8e+02 Score=29.01 Aligned_cols=73 Identities=7% Similarity=0.057 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchh-hhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFS-EVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~-evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
.++..|.+-|.+.++.++..|...|-.+..+.+.... .|.....+..|++++.. ..+..|++.++..|...+.
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~-s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT-CCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHcc
Confidence 4578888999999999999999999888765334443 57777789999998653 3456888887777754443
No 101
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=24.82 E-value=4.7e+02 Score=26.85 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=64.7
Q ss_pred CCCCChHHHHHHHHhHhcCCCc---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch-hhhccHHHHH
Q 041149 50 LEEPNWGMNMRICALINSEEFS---------GSEIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF-SEVASEKVLD 119 (389)
Q Consensus 50 l~~~Dw~~ileicD~In~~~~~---------~keA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F-~evas~~Fl~ 119 (389)
+.+++|..-...|..+..=..+ -...+..|.+-|++.++.|...|+..|..+...++..+ +.-.-...+.
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHH
Confidence 3456787655555554322211 13467778888899999999999999999999987654 2222345677
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 120 EMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 120 eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.|.+.+.+ +..|+..++..|......
T Consensus 455 ~l~~~l~~---~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 455 CLIEGLSA---EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHTTS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHHHHH
Confidence 77777754 278888877777665543
No 102
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.64 E-value=5e+02 Score=25.64 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=28.1
Q ss_pred HHHHHHHHHhHHH-HHHHHHhhCCCCCCCchhHHHHHHHHHHHHhHHHHHHhh
Q 041149 227 KKEFLVVTRNSLD-LLSSILNTETEPKPIKEDLTVSMLEKCKESQPVIQRIIE 278 (389)
Q Consensus 227 ~~~eLe~vk~n~~-LL~emL~~~~~~~~~~ddli~EL~~~Cr~mq~rI~rli~ 278 (389)
+..+|+...+.+. |+..+.+.+.+.+....+.+...-+..++|...|++|-.
T Consensus 46 ~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~ 98 (409)
T 1m1j_C 46 LLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 3444555555553 444455555554433334444456677778777777643
No 103
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=23.24 E-value=2.7e+02 Score=30.69 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
.+..|.+.|++.++.+...++.+|..+++.|+..+.. .-..++..+..++.++.....|+..++..+..|...
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh
Confidence 3455667789999999999999999999998765532 125677888888876444468888889888888654
No 104
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=23.18 E-value=2.1e+02 Score=28.25 Aligned_cols=67 Identities=9% Similarity=0.047 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcch-hhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVF-SEVASEKVLDEMVRMIENPQMDPGNRSRALQLIR 143 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F-~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~ 143 (389)
++..|..-|.+.+..++..|...|-.+..++.... ..+.....+.-|..++.. .+.+|+..+|+.|.
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~--~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA--KDTKIIQVILDAIS 426 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 45667778889999999999988888887765544 357777888889999874 46678877776554
No 105
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.95 E-value=3.1e+02 Score=22.35 Aligned_cols=86 Identities=7% Similarity=0.127 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhCCCCCCCc--hhHHH----HHHHHHHHHhHHHHHHhhhc---CCCHH--HHHHHHHhh
Q 041149 226 EKKEFLVVTRNSLDLLSSILNTETEPKPIK--EDLTV----SMLEKCKESQPVIQRIIEST---TDDEA--MLFEALNLH 294 (389)
Q Consensus 226 k~~~eLe~vk~n~~LL~emL~~~~~~~~~~--ddli~----EL~~~Cr~mq~rI~rli~~~---~~dEe--~L~eLL~~N 294 (389)
.+...|-.+.+|+.-|.-++..+-.+.... -+-+. ...+.|+.....|-+|-... ..+++ --...-.+-
T Consensus 18 ~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~ 97 (130)
T 2dnx_A 18 TCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLM 97 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHH
Confidence 355668888899999999988763322221 12233 33344444444444444321 01111 112355567
Q ss_pred HHHHHHHHHHHHHHHhh
Q 041149 295 DELQLVISRYEELEAAV 311 (389)
Q Consensus 295 DeL~~vl~rYe~~~~~~ 311 (389)
.++..+|..|....+..
T Consensus 98 ~dF~~~L~~FQ~~Qr~~ 114 (130)
T 2dnx_A 98 NDFSAALNNFQAVQRRV 114 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888999999887653
No 106
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=22.60 E-value=71 Score=26.25 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=42.5
Q ss_pred HHHHHHhcCCcchhhhccH-HHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCC
Q 041149 97 LLEACAMNCEKVFSEVASE-KVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERS 168 (389)
Q Consensus 97 LLe~cVkNCG~~F~evas~-~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~G 168 (389)
.++.+..+-|..+..++.+ .|-+.=+..|.. ..+..+++++.++|..|... .... .+..+++-|++-|
T Consensus 8 ~f~~Ia~~lG~~Wk~LAR~LGlse~dId~Ie~-~~p~dl~eq~~~mL~~W~~r~G~~A---Tv~~L~~AL~~i~ 77 (122)
T 3ezq_B 8 AFNVICDNVGKDWRRLARQLKVSDTKIDSIED-RYPRNLTERVRESLRIWKNTEKENA---TVAHLVGALRSCQ 77 (122)
T ss_dssp HHHHHHTTCCTTHHHHHHHTTCCHHHHHHHHH-HCSSCHHHHHHHHHHHHHHHCTTTC---CHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHHHHHHhCCCHHHHHHHHH-HCCCCHHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHCC
Confidence 4566778888777666544 355443333332 11224889999999999986 3333 3566777777665
No 107
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.91 E-value=1.1e+02 Score=21.80 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=24.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHhhH-HHHHHHHHH
Q 041149 272 VIQRIIESTTDDEAMLFEALNLHD-ELQLVISRY 304 (389)
Q Consensus 272 rI~rli~~~~~dEe~L~eLL~~ND-eL~~vl~rY 304 (389)
.|..++.-+..+++.-..+|+.|+ +|..++..|
T Consensus 18 ~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 18 LIQQFTTITGASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455566555667887888888765 899999988
No 108
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=21.88 E-value=91 Score=24.30 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=28.2
Q ss_pred cHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHhhCCC
Q 041149 114 SEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES-EDLAYLPVYRQTYMSLKERSV 169 (389)
Q Consensus 114 s~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~-~~~~~l~~i~~~Y~~Lk~~Gv 169 (389)
.+.|+-+|+. ..+.+-..|.+. +=.| ..|.++|+.|+.+|-
T Consensus 46 aKvfVgelVE-------------~A~~V~~~~~~~~Pl~P--~HireA~rrl~~~g~ 87 (89)
T 1bh9_B 46 SKVFVGEVVE-------------EALDVCEKWGEMPPLQP--KHMREAVRRLKSKGQ 87 (89)
T ss_dssp HHHHHHHHHH-------------HHHHHHHHTTCCSSCCH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-------------HHHHHHHHhcCCCCCCc--HHHHHHHHHHHHcCC
Confidence 4556666664 345555679887 3333 579999999999983
No 109
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=21.80 E-value=2.9e+02 Score=29.85 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-----cchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhcC
Q 041149 76 VKAIKKKISGKSVVSQRLSLDLLEACAMNCE-----KVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGES 148 (389)
Q Consensus 76 ~raIrKrL~~~n~~vql~AL~LLe~cVkNCG-----~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~~ 148 (389)
+..|.+-++++++.++.+|+..|--|..+.+ ..|.+.+-.+.+..|++++..+..+.+|++-..+.|..-...
T Consensus 332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD 409 (810)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 3567777788999999999998888876544 356665667889999999987544667888888877666554
No 110
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=21.04 E-value=1.1e+02 Score=20.49 Aligned_cols=25 Identities=12% Similarity=0.468 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHhHHHHHHhhh
Q 041149 255 KEDLTVSMLEKCKESQPVIQRIIES 279 (389)
Q Consensus 255 ~ddli~EL~~~Cr~mq~rI~rli~~ 279 (389)
.++--+.++..|...|..++.|+.+
T Consensus 10 r~~rkerIv~eCnavrqALQdLlse 34 (40)
T 4e17_B 10 RDDRRERIVAECNAVRQALQDLLSE 34 (40)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444577899999999999999875
No 111
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.03 E-value=4.2e+02 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 041149 72 GSEIVKAIKKKISGKSVVSQRLSLDLLE 99 (389)
Q Consensus 72 ~keA~raIrKrL~~~n~~vql~AL~LLe 99 (389)
...++..|.+.|+++++.|...|+..|-
T Consensus 126 ~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 126 SPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 5567788888888888888777765543
No 112
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=20.12 E-value=2.3e+02 Score=29.36 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 74 EIVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 74 eA~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
..+..|.+.|.+.++.+|..|...|-.+.......-..|+...-+..|++++.. .+..|+......|..++.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s--~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH--PKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC--SSHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC--CCHHHHHHHHHHHHHHHc
Confidence 356777777888888888888776655544322222356666677778888864 456777777777766664
No 113
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=20.11 E-value=1.4e+02 Score=31.92 Aligned_cols=70 Identities=7% Similarity=0.050 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcchhhhccHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 041149 75 IVKAIKKKISGKSVVSQRLSLDLLEACAMNCEKVFSEVASEKVLDEMVRMIENPQMDPGNRSRALQLIRAWGE 147 (389)
Q Consensus 75 A~raIrKrL~~~n~~vql~AL~LLe~cVkNCG~~F~evas~~Fl~eL~kl~~~~~~~~~Vk~kiL~Li~~Wa~ 147 (389)
++..|-..|.+ +.|+..|...|..+++.|+..|.-.. ..+++.|..++..+..+..++..+++.|..-..
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 34455555544 88999999999999999987664222 456666666666534445566665555544443
Done!