BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041151
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/476 (46%), Positives = 306/476 (64%), Gaps = 29/476 (6%)
Query: 9 ESMNENVKKVQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQRPLTFP 59
+++N V K +YAVRGE+ + A LQ++ K +I++ N+GNP +LGQ+P+TF
Sbjct: 26 DNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFF 85
Query: 60 RQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAE 118
R+V+ALC P LL + +F AD+I+RAK L++ G GAYS S+GI G+R +A
Sbjct: 86 REVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIAS 145
Query: 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT------- 165
I RDG+P++ + IFLTDGAS GV + +IR E DG+++ L+ +
Sbjct: 146 GIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGA 205
Query: 166 ----WKRQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220
+ + G L +D+++ + ARS+GI VRA+V+INPGNPTGQ L+E N +I++F
Sbjct: 206 LVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKF 265
Query: 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280
C E LVLL DEVYQ+NIY D + F S KK++ +G +++ LVS+ +VSKGY+GECG
Sbjct: 266 CKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYG-EEDLPLVSYQSVSKGYYGECG 324
Query: 281 QRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340
+RGGYFE+T ++IYKIAS+ L N+ QI L++NP K D SY + E G
Sbjct: 325 KRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDG 384
Query: 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400
IL SL RRA+ + FN + CN EGAMY FPQI LP KAIEAAK A K PD FY L
Sbjct: 385 ILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYAL 444
Query: 401 RLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 456
RLLE+TGI VPGSGFGQ G +H R TILP E+ +PA++ F F++ FM +Y D
Sbjct: 445 RLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 500
>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp
Length = 498
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/482 (41%), Positives = 296/482 (61%), Gaps = 36/482 (7%)
Query: 4 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRP 55
+++ ESMN VK V+YAVRG + L+A E++ E ++ +I N+G+ A+GQ+P
Sbjct: 21 QSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQP 80
Query: 56 LTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRK 114
+TF RQV+ALC P LLD P+ FP DA RA+ L G LG+YS S+G+ +R+
Sbjct: 81 ITFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIRE 136
Query: 115 EVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEGD---GVVL------LFHT 164
+VA +I RRDG P+DP+ I+LT GAS G+ L ++ G G GV++ L+
Sbjct: 137 DVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSA 196
Query: 165 T------------WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212
+ L +N+L+++V +A+ + + IINPGNPTGQ S
Sbjct: 197 VISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRK 255
Query: 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272
+ +++ F ++E L LL DEVYQ N+Y + F S KKVL +MG +S V+L SFH+ S
Sbjct: 256 CIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTS 315
Query: 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYE 332
KGY GECG RGGY E+ N+ P+ ++ K+ S+ L P V Q M ++VNP G+ S+E
Sbjct: 316 KGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFE 375
Query: 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392
QF RE + +L +L ++A++ D FN + CN +GAMY+FP+I +P KA+EAA+
Sbjct: 376 QFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQM 435
Query: 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452
PD+FYC++LLE TGI VPGSGFGQ+EG +H R TILP E + +++ K F+ F+E
Sbjct: 436 APDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLE 495
Query: 453 QY 454
+Y
Sbjct: 496 KY 497
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 191/455 (41%), Gaps = 86/455 (18%)
Query: 18 VQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNV 77
V+YA+R ++ L A EL+K+G K+I N+G+P +P ++ A C+A
Sbjct: 19 VEYAIR-DVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKE--AYCKA--------- 66
Query: 78 GIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTD 137
I +Y Y DS G+P +RK + E +R++G P+ + +T
Sbjct: 67 --------IKEGHNY----------YGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA 108
Query: 138 GASKGVMQTLNCVIRGEGDGVV-----------LLFHTTWKRQQIGVLIINDLQQSVAQA 186
++ +Q + + GD ++ L+ K + + D Q +
Sbjct: 109 AVTEA-LQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDI 167
Query: 187 RSKGITVR--AMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244
R K IT R A+ +INP NPTG + L EIL + + ++ DE+Y Y+ E
Sbjct: 168 RKK-ITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI 226
Query: 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE----IY 300
S +K+V ++ + +SK Y+ G R GY + P + E I
Sbjct: 227 SPGS----------LTKDVPVIVMNGLSKVYFA-TGWRLGYMYFVD-PENKLSEVREAID 274
Query: 301 KIASIALSPNVPAQI--FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS 358
++A I L PN PAQ GL G + Y K ++ L+ R + N
Sbjct: 275 RLARIRLCPNTPAQFAAIAGLT------GPMDY------LKEYMKKLKERRDYIYKRLNE 322
Query: 359 CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418
+ +GA Y FP+I + P D + L +L + V GSGFG+
Sbjct: 323 IPGISTTKPQGAFYIFPKIEVGPWK----------NDKEFVLDVLHNAHVLFVHGSGFGE 372
Query: 419 KEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQ 453
G H R LP E + M+ F+KF E +++
Sbjct: 373 Y-GAGHFRAVFLPPIEILEEAMDRFEKFMKERLKE 406
>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
Plp And Inhibitor Avg
Length = 428
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 34/279 (12%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156
+ + D G+P RK +A+F+E+ G DPE + + GA+ G +T+ + GD
Sbjct: 75 AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGAT-GANETIIFCLADPGD 133
Query: 157 GVVLL--FHTTWKRQ---QIGVLII--------------NDLQQSVAQARSKGITVRAMV 197
++ ++ + R + GV +I ++++ A+ I V+ ++
Sbjct: 134 AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLI 193
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
+ NP NP G L + L+ +L F Q N+ L+ DE+Y ++ D FVS ++L + +
Sbjct: 194 LTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQEM 252
Query: 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFM 317
+ + + +++SK G G R G N V+ K++S L + Q F+
Sbjct: 253 TYCNKDLVHIVYSLSKDM-GLPGFRVGIIYSFN--DDVVNCARKMSSFGLV-STQTQYFL 308
Query: 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356
M++ K D F+RES L +R + T+G
Sbjct: 309 AAMLSDEKFVD----NFLRESA---MRLGKRHKHFTNGL 340
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 157/369 (42%), Gaps = 64/369 (17%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDG 157
GL Y + G+ +R+ +AE +++++G +DP+ I + GA++ + L+ ++ DG
Sbjct: 54 GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK---DG 110
Query: 158 VVLLFHT---------------------TWKRQQIGVLIINDLQQSVAQARSKGITVRAM 196
+L T T++ + L +++L++ V RA+
Sbjct: 111 EEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFR-LNVDELKKYVTD------KTRAL 163
Query: 197 VIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256
+I +P NPTG L++ +L EI F + +L+++ DEVY+ IY D R + + +
Sbjct: 164 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHY-----SIASLD 218
Query: 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIF 316
F + + + F SK + G R G+ P ++ + K + P
Sbjct: 219 GMFERTITVNGF---SKTF-AMTGWRLGF---VAAPSWIIERMVKFQ--MYNATCPVTFI 269
Query: 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376
LK E+ + + + + RR +++ N + +GA Y FP+
Sbjct: 270 QYAAAKALKD-----ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPR 323
Query: 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436
IR G F L L EA ++ VPGS FG K G ++R + A E +
Sbjct: 324 IR----------DTGLTSKKFSELMLKEAR-VAVVPGSAFG-KAGEGYVRISYATAYEKL 371
Query: 437 PAIMESFKK 445
ME ++
Sbjct: 372 EEAMERMER 380
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 157/369 (42%), Gaps = 64/369 (17%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDG 157
GL Y + G+ +R+ +AE +++++G +DP+ I + GA++ + L+ ++ DG
Sbjct: 55 GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK---DG 111
Query: 158 VVLLFHT---------------------TWKRQQIGVLIINDLQQSVAQARSKGITVRAM 196
+L T T++ + L +++L++ V RA+
Sbjct: 112 EEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFR-LNVDELKKYVTD------KTRAL 164
Query: 197 VIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256
+I +P NPTG L++ +L EI F + +L+++ DEVY+ IY D R + + +
Sbjct: 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHY-----SIASLD 219
Query: 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIF 316
F + + + F SK + G R G+ P ++ + K + P
Sbjct: 220 GMFERTITVNGF---SKTF-AMTGWRLGF---VAAPSWIIERMVKFQ--MYNATCPVTFI 270
Query: 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376
LK E+ + + + + RR +++ N + +GA Y FP+
Sbjct: 271 QYAAAKALKD-----ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPR 324
Query: 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436
IR G F L L EA ++ VPGS FG K G ++R + A E +
Sbjct: 325 IR----------DTGLTSKKFSELMLKEAR-VAVVPGSAFG-KAGEGYVRISYATAYEKL 372
Query: 437 PAIMESFKK 445
M+ ++
Sbjct: 373 EEAMDRMER 381
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 152/361 (42%), Gaps = 54/361 (14%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158
G Y+ GIP +R+ +AE R +G PE +T G S+ + ++ GD V
Sbjct: 60 GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEV 118
Query: 159 VLL--FHTTWK---RQQIGVLI-INDLQQS----VAQARSKGITVR--AMVIINPGNPTG 206
++L + ++ R GV++ + L + + + IT R A+V+ +P NPTG
Sbjct: 119 IVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
+ L + R + + L+ DE+Y+ +Y+ E S +V + L + +
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPGRVAPEHTLTVNGAAKAF 236
Query: 267 SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIAL-SPNVPAQIFMGLMVNPLK 325
+ GY CG PK V I +AS++ S P I + L
Sbjct: 237 AMTGWRIGY--ACG------------PKEV--IKAMASVSRQSTTSPDTIAQWATLEALT 280
Query: 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-LPPKAI 384
+ S FV ++ E+ RRR ++ +G + + GA Y + P +
Sbjct: 281 NQEAS-RAFVEMAR---EAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEV 335
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444
AA+ RLLEA G++ VPG+ F H+R + +EE++ +E F
Sbjct: 336 RAAE------------RLLEA-GVAVVPGTDFA---AFGHVRLSYATSEENLRKALERFA 379
Query: 445 K 445
+
Sbjct: 380 R 380
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 152/361 (42%), Gaps = 54/361 (14%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158
G Y+ GIP +R+ +AE R +G PE +T G S+ + ++ GD V
Sbjct: 60 GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEV 118
Query: 159 VLL--FHTTWK---RQQIGVLI-INDLQQS----VAQARSKGITVR--AMVIINPGNPTG 206
++L + ++ R GV++ + L + + + IT R A+V+ +P NPTG
Sbjct: 119 IVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
+ L + R + + L+ DE+Y+ +Y+ E S +V + L + +
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPGRVAPEHTLTVNGAAKAF 236
Query: 267 SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIAL-SPNVPAQIFMGLMVNPLK 325
+ GY CG PK V I +AS++ S P I + L
Sbjct: 237 AMTGWRIGY--ACG------------PKEV--IKAMASVSRQSTTSPDTIAQWATLEALT 280
Query: 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-LPPKAI 384
+ S FV ++ E+ RRR ++ +G + + GA Y + P +
Sbjct: 281 NQEAS-RAFVEMAR---EAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEV 335
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444
AA+ RLLEA G++ VPG+ F H+R + +EE++ +E F
Sbjct: 336 RAAE------------RLLEA-GVAVVPGTDFA---AFGHVRLSYATSEENLRKALERFA 379
Query: 445 K 445
+
Sbjct: 380 R 380
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 152/361 (42%), Gaps = 54/361 (14%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158
G Y+ GIP +R+ +AE R +G PE +T G S+ + ++ GD V
Sbjct: 60 GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEV 118
Query: 159 VLL--FHTTWK---RQQIGVLI-INDLQQS----VAQARSKGITVR--AMVIINPGNPTG 206
++L + ++ R GV++ + L + + + IT R A+V+ +P NPTG
Sbjct: 119 IVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
+ L + R + + L+ DE+Y+ +Y+ E S +V + L + +
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPGRVAPEHTLTVNGAAKAF 236
Query: 267 SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIAL-SPNVPAQIFMGLMVNPLK 325
+ GY CG PK V I +AS++ S P I + L
Sbjct: 237 AMTGWRIGY--ACG------------PKEV--IKAMASVSRQSTTSPDTIAQWATLEALT 280
Query: 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-LPPKAI 384
+ S FV ++ E+ RRR ++ +G + + GA Y + P +
Sbjct: 281 NQEAS-RAFVEMAR---EAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEV 335
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444
AA+ RLLEA G++ VPG+ F H+R + +EE++ +E F
Sbjct: 336 RAAE------------RLLEA-GVAVVPGTDFA---AFGHVRLSYATSEENLRKALERFA 379
Query: 445 K 445
+
Sbjct: 380 R 380
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 152/361 (42%), Gaps = 54/361 (14%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158
G Y+ GIP +R+ +AE R +G PE +T G S+ + ++ GD V
Sbjct: 60 GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEV 118
Query: 159 VLL--FHTTWK---RQQIGVLI-INDLQQS----VAQARSKGITVR--AMVIINPGNPTG 206
++L + ++ R GV++ + L + + + IT R A+V+ +P NPTG
Sbjct: 119 IVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
+ L + R + + L+ DE+Y+ +Y+ E S +V + L + +
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPGRVAPEHTLTVNGAAKAF 236
Query: 267 SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLK 325
+ GY CG PK V I +AS+ + S P I + L
Sbjct: 237 AMTGWRIGY--ACG------------PKEV--IKAMASVSSQSTTSPDTIAQWATLEALT 280
Query: 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-LPPKAI 384
+ S FV ++ E+ RRR ++ +G + + GA Y + P +
Sbjct: 281 NQEAS-RAFVEMAR---EAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEV 335
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444
AA+ RLLEA G++ VPG+ F H+R + +EE++ +E F
Sbjct: 336 RAAE------------RLLEA-GVAVVPGTDFA---AFGHVRLSYATSEENLRKALERFA 379
Query: 445 K 445
+
Sbjct: 380 R 380
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 42/253 (16%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161
YS S GI +R+ A + +RR PE + +T+G S+ ++ + VI GD +++L
Sbjct: 75 YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSF-AVIANPGDEILVLE 133
Query: 162 -FHTTW---------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205
F+ + +R + G I +L+ S R+KGI V+ NP NPT
Sbjct: 134 PFYANYNAFAKIAGVKLIPVTRRXEEGFAIPQNLE-SFINERTKGI-----VLSNPCNPT 187
Query: 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQL 265
G + R ++ + L L+ DEVY + +++ E F S+ + D ++
Sbjct: 188 GVVYGKDEXRYLVEIAERHGLFLIVDEVYSEIVFRGE--FASALSIESD---------KV 236
Query: 266 VSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLK 325
V +VS + CG R G N + + K+A L+P + QI ++N
Sbjct: 237 VVIDSVSXKF-SACGARVGCLITRN--EELISHAXKLAQGRLAPPLLEQIGSVGLLNL-- 291
Query: 326 PGDISYEQFVRES 338
D S+ FVRE+
Sbjct: 292 --DDSFFDFVRET 302
>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
Length = 389
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 135/329 (41%), Gaps = 59/329 (17%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLLF 162
Y+D RGI +R+ +A+ I R P+ + +T+GA + + ++ GD V++ F
Sbjct: 74 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIV-F 131
Query: 163 HTTWKRQQIGVLIINDLQQSVAQARSK----------GITV---RAMVIINPGNPTGQCL 209
W +++ V SK G+ V +A++I +P NPTG
Sbjct: 132 SPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVY 191
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269
L ++R + N ++ DEVY +Y DE F S ++D+ F + V + F
Sbjct: 192 RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE--FTS----ILDVSEGFDRIVYINGF- 244
Query: 270 TVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-PNVPAQIFMGLMVNPLKPGD 328
SK + G R GY + K + KI S S N AQ + L+ +
Sbjct: 245 --SKSH-SMTGWRVGYLISSE---KVATAVSKIQSHTTSCINTVAQY---AALKALEVDN 295
Query: 329 ISYEQFVRESKG-ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387
Q +E K ++E L++ + EGA Y F ++R
Sbjct: 296 SYMVQTFKERKNFVVERLKKMGVKFVE------------PEGAFYLFFKVR--------- 334
Query: 388 KRAGKVPDVFYCLRLLEATGISTVPGSGF 416
DV +C RLLE ++ VPGS F
Sbjct: 335 -----GDDVKFCERLLEEKKVALVPGSAF 358
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 151/361 (41%), Gaps = 54/361 (14%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158
G Y+ GIP +R+ +AE R +G PE +T G + + ++ GD V
Sbjct: 60 GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAIL-DPGDEV 118
Query: 159 VLL--FHTTWK---RQQIGVLI-INDLQQS----VAQARSKGITVR--AMVIINPGNPTG 206
++L + ++ R GV++ + L + + + IT R A+V+ +P NPTG
Sbjct: 119 IVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
+ L + R + + L+ DE+Y+ +Y+ E S +V + L + +
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPGRVAPEHTLTVNGAAKAF 236
Query: 267 SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLK 325
+ GY CG PK V I +AS+ + S P I + L
Sbjct: 237 AMTGWRIGY--ACG------------PKEV--IKAMASVSSQSTTSPDTIAQWATLEALT 280
Query: 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-LPPKAI 384
+ S FV ++ E+ RRR ++ +G + + GA Y + P +
Sbjct: 281 NQEAS-RAFVEMAR---EAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEV 335
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444
AA+ RLLEA G++ VPG+ F H+R + +EE++ +E F
Sbjct: 336 RAAE------------RLLEA-GVAVVPGTDFA---AFGHVRLSYATSEENLRKALERFA 379
Query: 445 K 445
+
Sbjct: 380 R 380
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 138/333 (41%), Gaps = 46/333 (13%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-- 160
Y + G P +R+ +A+ ++R +G + I +T+G + + + +I GD V++
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE-PGDEVIIPA 121
Query: 161 ---LFHTTWKRQQIGVLII------NDLQQSVAQARSKGITVRAMVII--NPGNPTGQCL 209
+ + + G +I + S Q R + IT + +++ P NPTG
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIR-QAITPKTKLLVFNTPSNPTGMVY 180
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269
+ +R I + + L +L DE+Y++ +Y D ++ + + P + E +V
Sbjct: 181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDD------AQHLSIGAASPEAYERSVVC-S 233
Query: 270 TVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDI 329
+K Y G R G+ P V KI + S NV G +
Sbjct: 234 GFAKTY-AMTGWRVGFLAG---PVPLVKAATKIQGHSTS-NVCTFAQYGAIA-------- 280
Query: 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389
+YE + +L + R R M D N+ + C +GA Y FP I AK
Sbjct: 281 AYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSI---------AKT 331
Query: 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422
D +C LL+ ++TVPG+ FG + I
Sbjct: 332 GRSSLD--FCSELLDQHQVATVPGAAFGADDCI 362
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 150/361 (41%), Gaps = 54/361 (14%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158
G Y+ GIP +R+ +AE R +G PE +T G + + ++ GD V
Sbjct: 60 GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAIL-DPGDEV 118
Query: 159 VLL--FHTTWK---RQQIGVLI-INDLQQS----VAQARSKGITVR--AMVIINPGNPTG 206
++L + ++ R GV++ + L + + + IT R A+V+ +P NPTG
Sbjct: 119 IVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTG 178
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
+ L + R + + L+ DE+Y+ +Y+ E S +V + L +
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH--FSPGRVAPEHTLTVNGAAXAF 236
Query: 267 SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLK 325
+ GY CG PK V I +AS+ + S P I + L
Sbjct: 237 AMTGWRIGY--ACG------------PKEV--IKAMASVSSQSTTSPDTIAQWATLEALT 280
Query: 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-LPPKAI 384
+ S FV ++ E+ RRR ++ +G + + GA Y + P +
Sbjct: 281 NQEAS-RAFVEMAR---EAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEV 335
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444
AA+ RLLEA G++ VPG+ F H+R + +EE++ +E F
Sbjct: 336 RAAE------------RLLEA-GVAVVPGTDFA---AFGHVRLSYATSEENLRKALERFA 379
Query: 445 K 445
+
Sbjct: 380 R 380
>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii
Reveals Its Similarity In The Active Site To Kynurenine
Aminotransferases
Length = 370
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 173/425 (40%), Gaps = 86/425 (20%)
Query: 30 ASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89
A +L+ EGKK+I +G P +P+ + I
Sbjct: 21 AQKLESEGKKVIHLEIGEPDFNTPKPIV-------------------------DEGIKSL 55
Query: 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD--PELIFLTDGASKGVMQTL 147
K G Y+DSRGI +R++++E +D Y +D P+ I +T G+S G+ L
Sbjct: 56 KE-------GKTHYTDSRGILELREKISEL--YKDKYKADIIPDNIIITGGSSLGLFFAL 106
Query: 148 NCVIRGEGDGVVLL-----FHTTWKRQQIGVLIINDLQ-QSVAQARSKGITVRAMVIINP 201
+ +I +GD V++ + + R + D +S+ +A S +A++I +P
Sbjct: 107 SSII-DDGDEVLIQNPCYPCYKNFIRFLGAKPVFCDFTVESLEEALSD--KTKAIIINSP 163
Query: 202 GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261
NP G+ + REI F Y+ ++ DE+Y +Y+ + + D L K
Sbjct: 164 SNPLGEVID----REIYEFAYENIPYIISDEIYNGLVYEGK----CYSAIEFDENL--EK 213
Query: 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMV 321
+ + F + + G R GY ++N DEI + A + L N+
Sbjct: 214 TILINGFSXL----YAMTGWRIGYV-ISN------DEIIE-AILKLQQNLFISAPTISQY 261
Query: 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381
LK + E RE +++ RR R++ V N GA Y FP I
Sbjct: 262 AALKAFEKETE---REINSMIKEFDRRRRLVLKYVKDFGWEVNNPI-GAYYVFPNIGEDG 317
Query: 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIME 441
+ + +LL+ ++ PG GFG K G ++R + + E++ +E
Sbjct: 318 RE--------------FAYKLLKEKFVALTPGIGFGSK-GKNYIRISYANSYENIKEGLE 362
Query: 442 SFKKF 446
K+F
Sbjct: 363 RIKEF 367
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 45/228 (19%)
Query: 29 RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88
+ASELQK+G K+I G+P P PR V+ L +P + PA+
Sbjct: 25 KASELQKKGVKLISLAAGDPD-----PELIPRAVLGEIAKEVLEKEPKSVMYTPAN---- 75
Query: 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLN 148
GIP +R+E+A F+++ D PE I +T G + G + L
Sbjct: 76 -------------------GIPELREELAAFLKKYDHLEVSPENIVITIGGT-GALDLLG 115
Query: 149 CVIRGEGDGVVL----LFHTTWKRQQIGVLI-----------INDLQQSVAQARSKGITV 193
V+ GD V+ +T +Q+G I ++ L++ + + ++KG V
Sbjct: 116 RVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKV 175
Query: 194 RAMVIINPG-NPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ + I G NP G +S + +L + +L+++ D Y Y+
Sbjct: 176 KLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYE 223
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 144/345 (41%), Gaps = 54/345 (15%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-- 160
YS SRGIP +R+ ++ + R DPE + SK + L GD +++
Sbjct: 71 YSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPN 130
Query: 161 ------LFHTTWKRQQI-------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207
++ Q+ G+ N+L++++ ++ K R M++ P NPT Q
Sbjct: 131 PSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKP---RMMILGFPSNPTAQ 187
Query: 208 CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVS 267
C+ ++ Q +++++ D Y +Y K M +P +K++ V
Sbjct: 188 CVELDFFERVVALAKQYDVMVVHDLAYADIVY-------DGWKAPSIMQVPGAKDIA-VE 239
Query: 268 FHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKP- 326
F T+SK Y G R G F + N P+ V + +I S F L V +
Sbjct: 240 FFTLSKSY-NMAGWRIG-FMVGN--PELVSALARIKSYH-----DYGTFTPLQVAAIAAL 290
Query: 327 -GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIE 385
GD +Q VR+ I ++R ++ G +V N + +MY + +I P +
Sbjct: 291 EGD---QQCVRD---IARQYQQRRDVLVKGLREAGWMVEN-PKASMYVWAKIPEPYAHLG 343
Query: 386 AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430
+ + A K LL+ +S PG GFG G H+R ++
Sbjct: 344 SLEFAKK---------LLQDAKVSVSPGIGFGDY-GDDHVRFALI 378
>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
pdb|1V2E|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2E|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With A-Keto-G-Methylthiobutyrate
pdb|1V2F|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
pdb|1V2F|B Chain B, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase
Complex With 3-Phenylpropionate
Length = 381
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161
Y+ G+P +R+ +AE + +PE + +T GA++ + L ++ G GD VV+L
Sbjct: 57 YAPPAGLPALREALAE------EFAVEPESVVVTSGATEALYVLLQSLV-GPGDEVVVLE 109
Query: 162 ----------FHTTWKRQQIGVLIINDLQQSVAQARSKGIT--VRAMVIINPGNPTGQCL 209
F K + + + + + + A K +T RA+++ P NPTG
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVF 169
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244
E L I R +L L+ DEVY + +Y ERP
Sbjct: 170 GERELEAIARLARAHDLFLISDEVYDE-LYYGERP 203
>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
Length = 402
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 72 LDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE 131
+ DP V P D +L SG Y+ S G R+EVA + + P + +
Sbjct: 38 IGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGYLSSREEVASYYHCPEA-PLEAK 96
Query: 132 LIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWKRQQIGVLIINDLQQSVAQ 185
+ LT G S+ + L V+ G +++ L+ T + I V + N L + +
Sbjct: 97 DVILTSGCSQAIELCL-AVLANPGQNILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWE 155
Query: 186 ARSKGI------TVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
K + +V+ NP NP G S+ +L++IL ++ + +L DE+Y ++
Sbjct: 156 IDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVF 215
Query: 240 QD 241
D
Sbjct: 216 SD 217
>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L-Vinylglycine
Length = 473
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIE--RRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156
L + D G+P +K + +F+ R + DP + LT GA+ + C+ GE
Sbjct: 79 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAV 138
Query: 157 GVVLLFHTTWKRQ---QIGVLII--------------NDLQQSVAQARSKGITVRAMVII 199
+ ++ + R + GV I+ L+++ +A + + V+ +++
Sbjct: 139 LIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT 198
Query: 200 NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259
NP NP G ++ L +L F + + L+ DE+Y + F+S +VL D
Sbjct: 199 NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKDRNCDE 257
Query: 260 SKEV 263
+ EV
Sbjct: 258 NSEV 261
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIE--RRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156
L + D G+P +K + +F+ R + DP + LT GA+ + C+ GE
Sbjct: 79 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAV 138
Query: 157 GVVLLFHTTWKRQ---QIGVLII--------------NDLQQSVAQARSKGITVRAMVII 199
+ ++ + R + GV I+ L+++ +A + + V+ +++
Sbjct: 139 LIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT 198
Query: 200 NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259
NP NP G ++ L +L F + + L+ DE+Y + F+S +VL D
Sbjct: 199 NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKDRNCDE 257
Query: 260 SKEV 263
+ EV
Sbjct: 258 NSEV 261
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIE--RRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156
L + D G+P +K + +F+ R + DP + LT GA+ + C+ GE
Sbjct: 77 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAV 136
Query: 157 GVVLLFHTTWKRQ---QIGVLII--------------NDLQQSVAQARSKGITVRAMVII 199
+ ++ + R + GV I+ L+++ +A + + V+ +++
Sbjct: 137 LIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT 196
Query: 200 NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259
NP NP G ++ L +L F + + L+ DE+Y + F+S +VL D
Sbjct: 197 NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKDRNCDE 255
Query: 260 SKEV 263
+ EV
Sbjct: 256 NSEV 259
>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase
pdb|3DYD|B Chain B, Human Tyrosine Aminotransferase
Length = 427
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 72 LDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE 131
+ DP V P D +L SG Y+ S G R+E+A + + P + +
Sbjct: 61 IGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEA-PLEAK 119
Query: 132 LIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWKRQQIGVLIINDLQQSVAQ 185
+ LT G S+ + L V+ G +++ L+ T + I V + N L + +
Sbjct: 120 DVILTSGCSQAIDLCLA-VLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWE 178
Query: 186 ARSKGI------TVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
K + +++ NP NP G S+ +L++IL ++ + +L DE+Y ++
Sbjct: 179 IDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF 238
Query: 240 QD 241
D
Sbjct: 239 SD 240
>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
Synthase
Length = 410
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIE--RRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156
L + D G+P +K + +F+ R + DP + LT GA+ + C+ GE
Sbjct: 62 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAV 121
Query: 157 GVVLLFHTTWKRQ---QIGVLII--------------NDLQQSVAQARSKGITVRAMVII 199
+ ++ + R + GV I+ L+++ +A + + V+ +++
Sbjct: 122 LIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT 181
Query: 200 NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMD 254
NP NP G ++ L +L F + + L+ DE+Y + F+S +VL D
Sbjct: 182 NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKD 235
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 138/344 (40%), Gaps = 54/344 (15%)
Query: 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQT 146
R H+++ G Y+ G+ +R+ +A+ ER GY D + I +T GA++ +
Sbjct: 51 RLAHHVA---QGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107
Query: 147 LNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVA----------QARSKGITVRA- 195
+ ++R GD V+ F ++ + + + + +A Q + ++ R
Sbjct: 108 ITALVRN-GDEVIC-FDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTR 165
Query: 196 MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLM 253
+VI+N P NP+ +A+ + + + ++ DEVY+ N Q V + L
Sbjct: 166 LVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLR 225
Query: 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVP 312
+ + V + SF K Y G + GY P EI K+ + S N P
Sbjct: 226 E------RAVAVSSF---GKTY-HMTGWKVGY---CVAPAPISAEIRKVHQYLTFSVNTP 272
Query: 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMY 372
AQ+ + M+ ++ F R+ + IL + +R+ + C T +
Sbjct: 273 AQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEI--------LPCEGTYFLLV 324
Query: 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416
+ + + DV +C L + G++ +P S F
Sbjct: 325 DYSAV-------------STLDDVEFCQWLTQEHGVAAIPLSVF 355
>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
Length = 416
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 28/211 (13%)
Query: 54 RPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVR 113
+P P+ ++ L LD ++ A I + K ++ S Y + G P R
Sbjct: 27 KPSPSPKPIIKLSVGDPTLDK---NLLTSAAQIKKLKE--AIDSQECNGYFPTVGSPEAR 81
Query: 114 KEVAEFIERRDGYPSDPEL--------IFLTDGASKGVMQTLNCVIRGEGDGVVL----- 160
+ VA + R+ + EL + L G S G++ + + GD ++
Sbjct: 82 EAVATWW--RNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDA-GDYALVPQPGF 138
Query: 161 -LFHTTWKRQQIGVLIIN-----DLQQSVAQARS-KGITVRAMVIINPGNPTGQCLSEAN 213
+ T K IG+ N D + + + R K + +++ NP NP G S +
Sbjct: 139 PHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKH 198
Query: 214 LREILRFCYQENLVLLGDEVYQQNIYQDERP 244
+ +I+R + L L DE+Y +++ + P
Sbjct: 199 VEDIVRLAEELRLPLFSDEIYAGMVFKGKDP 229
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 22/162 (13%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159
L Y+ + G P + K +A F G DP L G + T + EGD V+
Sbjct: 60 LNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVI 119
Query: 160 LL--FHTTWKRQQI---GVLIINDLQQSVAQARSKGIT-----------------VRAMV 197
++ F ++ + G + L+ Q G + +A+V
Sbjct: 120 IIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALV 179
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ P NP G+ S L + C Q ++V + DEVYQ +Y
Sbjct: 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 22/162 (13%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159
L Y+ + G P + K +A F G DP L G + T + EGD V+
Sbjct: 60 LNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVI 119
Query: 160 LL--FHTTWKRQQI---GVLIINDLQQSVAQARSKGIT-----------------VRAMV 197
++ F ++ + G + L+ Q G + +A+V
Sbjct: 120 IIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALV 179
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ P NP G+ S L + C Q ++V + DEVYQ +Y
Sbjct: 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 22/162 (13%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159
L Y+ + G P + K +A F G DP L G + T + EGD V+
Sbjct: 60 LNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVI 119
Query: 160 LL--FHTTWKRQQI---GVLIINDLQQSVAQARSKGIT-----------------VRAMV 197
++ F ++ + G + L+ Q G + +A+V
Sbjct: 120 IIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALV 179
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ P NP G+ S L + C Q ++V + DEVYQ +Y
Sbjct: 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221
>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From
Silicibacter Pomeroyi
Length = 391
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-R 152
SL + LG Y+ + G+P +R+ +A G DP + +T G+S G + +
Sbjct: 56 SLETDALG-YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDS 114
Query: 153 GEGDGVVLLFHTTWKR--QQIGVLII-------NDLQQSVAQARSKGITVRAMVIINPGN 203
G+ G+ + ++++ + +G++ + N LQ A G+ + + + +P N
Sbjct: 115 GDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQP--VPADFAGLDLAGLXVASPAN 172
Query: 204 PTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
PTG L A ++ + + DE+Y Y+
Sbjct: 173 PTGTXLDHAAXGALIEAAQAQGASFISDEIYHGIEYE 209
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 184 AQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241
A A + +T RA++I +P NPTG LS L I NLV++ DEVY+ ++
Sbjct: 150 ADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDH 209
Query: 242 ER 243
R
Sbjct: 210 AR 211
>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
pdb|3DZZ|B Chain B, Crystal Structure Of A Putative Plp-Dependent
Aminotransferase (Lbul_1103) From Lactobacillus
Delbrueckii Subsp. At 1.61 A Resolution
Length = 391
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237
DL++ +A +VR V NP NP G SE ++ I C + ++L+ DE++
Sbjct: 151 DLEEKLATP-----SVRXXVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDL 205
Query: 238 IYQDE 242
+ DE
Sbjct: 206 VLTDE 210
>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
Length = 447
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 31/185 (16%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
P AI A+ L + + YS +RG P + + + E + +T GA++
Sbjct: 72 PQFAIKEAQKALDIPM--VNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE 129
Query: 142 GVMQTLNCVIRGEGDGVVLL--FHTTW-----------------------KRQQIGVLII 176
G++ L ++ GD V++ F + +R G
Sbjct: 130 GILSCLMGLLNA-GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWT 188
Query: 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236
D +Q SK +A++I P NP G+ + L + C + N+V++ DEVY+
Sbjct: 189 IDFEQFEKAITSK---TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEH 245
Query: 237 NIYQD 241
+ D
Sbjct: 246 LYFTD 250
>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase
pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransferase
pdb|2R5C|B Chain B, Aedes Kynurenine Aminotransferase In Complex With Cysteine
pdb|2R5E|A Chain A, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
pdb|2R5E|B Chain B, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
Length = 429
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 196 MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
M+IIN P NP G+ + A L + C + N++ + DEVY+ +++
Sbjct: 185 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFE 230
>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase
pdb|1YIZ|B Chain B, Aedes Aegypti Kynurenine Aminotrasferase
pdb|2R5C|A Chain A, Aedes Kynurenine Aminotransferase In Complex With Cysteine
Length = 429
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 196 MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
M+IIN P NP G+ + A L + C + N++ + DEVY+ +++
Sbjct: 185 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFE 230
>pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent
Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium
Diphtheriae At 1.99 A Resolution
Length = 377
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT 165
+ + AEF R GY + PE IF +G+ ++ + +V FH
Sbjct: 63 LSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLL 122
Query: 166 WKRQQIGVLI-------INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218
Q+ G+ I ++D+++ R++++ NP NP G + L E+
Sbjct: 123 SATQREGIFIDATGGINLHDVEKGFQAG------ARSILLCNPYNPLGXVFAPEWLNELC 176
Query: 219 RFCYQENLVLLGDEVYQQNIYQDER 243
++ + +L DE++ ++ +
Sbjct: 177 DLAHRYDARVLVDEIHAPLVFDGQH 201
>pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Chlamydia Trachomatis
pdb|3ASB|A Chain A, Crystal Structure Of Plp-Bound Ll-Diaminopimelate
Aminotransferase From Chlamydia Trachomatis
Length = 400
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 83 ADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG 142
A+A A + LS + G Y G+P +R++++E R G+ D + IF++DGA
Sbjct: 52 AEAFASSIARLSSPTTCRG-YGPDFGLPALRQKLSEDFYR--GF-VDAKEIFISDGAKVD 107
Query: 143 VMQTLNCVIRGEGDGVVL----------LFHTTWKRQQIGVLIINDLQQSVAQARSKGIT 192
+ + L+ G V + + T ++ I + + + + +
Sbjct: 108 LFRLLSFF--GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQ--ENAFFPEFPEDTH 163
Query: 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244
+ + + +P NPTG L++ LR I+ + + +++L D Y I P
Sbjct: 164 IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLP 215
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD--ERPFVS 247
V+ ++ +P NP G+ + L ++ C + N++++ DE++ IY D PF S
Sbjct: 157 VKLXLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFAS 213
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 177 NDLQQSVAQARSKGITVRAMVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
ND S+ + + + +VI+N P NPTG+ LS L ++ + + +L+ DE Y
Sbjct: 141 NDFTPSLNEKELQEVD---LVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYS 197
Query: 236 QNIYQDERP 244
+ IY++ P
Sbjct: 198 E-IYENTPP 205
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 20/167 (11%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
P + I K YL T G ++ +K V ++++ R + + I T G
Sbjct: 46 PPELIEGLKKYLDETVLGYTGPTEE-----YKKTVKKWMKDRHQWDIQTDWIINTAGVVP 100
Query: 142 GVMQTLNCVIRGEGDGVVLL------FHTTWKRQQIGVLIINDLQQS--------VAQAR 187
V + + GDGV+++ F K Q+ ++ L++ +
Sbjct: 101 AVFNAVREFTK-PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKL 159
Query: 188 SKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
SK +A++ +P NP G+ + L++I + +L+L DE++
Sbjct: 160 SKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIH 206
>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
Length = 376
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 27/176 (15%)
Query: 114 KEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQTLNCVIRGEGDGVVLLFHTTWKRQQI 171
+E A + E R G DP E + L G+ +G+ L + E +LL
Sbjct: 70 EEAARWYEGRYGVGLDPRREALALI-GSQEGLAHLLLALTEPED---LLLLPEVAYPSYF 125
Query: 172 GVLIINDLQQSVAQARSKGIT------------VRAMVIINPGNPTGQCLSEANLREILR 219
G + L+ + R G+ + +++ P NPTG E L
Sbjct: 126 GAARVASLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALG 185
Query: 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275
+ L L+ D Y +Y+ E P + LP +KE ++V ++SK Y
Sbjct: 186 LARKHGLWLIHDNPYVDQVYEGEAP--------SPLALPGAKE-RVVELFSLSKSY 232
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+A+++ P NP G+ + L+ I C + + + + DEVY+ +Y
Sbjct: 168 TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVY 214
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+A+++ P NP G+ + L+ I C + + + + DEVY+ +Y
Sbjct: 168 TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVY 214
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 136/371 (36%), Gaps = 80/371 (21%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLLF 162
Y G P +K V++ PE I T+GA+ + L +I GD V+ L+
Sbjct: 59 YGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIE-PGDHVISLY 112
Query: 163 HT----------------TWK-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205
T W+ ++ G L DL++ R T + + I N NPT
Sbjct: 113 PTYQQLYDIPKSLGAEVDLWQIEEENGWL--PDLEKLRQLIRP---TTKXICINNANNPT 167
Query: 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQL 265
G L E++ + +L DEVY+ D V S + D G+ +
Sbjct: 168 GAVXDRTYLEELVEIASEVGAYILSDEVYRSFSELD----VPSIIEVYDKGIAVNSLSXT 223
Query: 266 VSFHTVSKGYWGECGQRG----GYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMV 321
S + G+ Q Y + T I D++ +A +AL+
Sbjct: 224 YSLPGIRIGWVAANHQVTDILRDYRDYTXICAGVFDDL--VAQLALA------------- 268
Query: 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381
Y++ + ++ ILE + D + E + S+ IR
Sbjct: 269 --------HYQEILERNRHILE----ENLAILDQW---------IEEEPLVSY--IRPAV 305
Query: 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHL-----RTTILPAEEDM 436
+ K A P +CL+LL+ G+ VPG+ F +++G L + T++ E +
Sbjct: 306 VSTSFVKIAVDXPXEDFCLQLLQEHGVLLVPGNRF-ERDGYVRLGFACEQETLIKGLEKL 364
Query: 437 PAIMESFKKFN 447
+ F K N
Sbjct: 365 SQFLRRFDKEN 375
>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
Length = 391
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243
V+ ++ NP NP G+ ++ L+++ C + N+ ++ DE++ I + +
Sbjct: 165 VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK 215
>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
Length = 392
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
V+ ++ NP NP G+ L +I C + +++L+ DE++Q
Sbjct: 165 VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQ 207
>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
pdb|3QGU|B Chain B, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
Length = 449
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 107/265 (40%), Gaps = 34/265 (12%)
Query: 188 SKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVS 247
SK + +P NPTG + A L E++ F + +L+ D Y I + P
Sbjct: 205 SKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCP--- 261
Query: 248 SKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIAL 307
K + + +P + EV + + + SK Y G G R G+ + PK + A
Sbjct: 262 --KTIYE--IPGADEVAIETC-SFSK-YAGFTGVRLGW----TVVPKALKYANGEPVHAD 311
Query: 308 SPNVPAQIFMGLMVNPLKPGDISYEQ--FVRESKGILESLRRRARMMTDGFNSCRNVVCN 365
V F G N ++ G ++ Q ++E +++ + A+++ F V
Sbjct: 312 WNRVMTTCFNGAS-NIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYG 370
Query: 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHL 425
G + + P K DVF +LE I T PGSG+G G +
Sbjct: 371 ---GDDAPYIWVGFPGKPSW---------DVF--AEILERCNIVTTPGSGYG-PAGEGFV 415
Query: 426 RTTILPAEEDMPAIMESFKKFNDEF 450
R + + E+ I+E+ ++F + +
Sbjct: 416 RASAFGSREN---ILEAVRRFKEAY 437
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPA-EEDMPAIMESFKKFNDEFMEQYE 455
++A G+ + G + IFHL I+P E D P I +SFK ++ E YE
Sbjct: 73 VKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFKSFKPRKEQEKEYYE 126
>pdb|1CBF|A Chain A, The X-ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif
Length = 285
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 16/105 (15%)
Query: 133 IFLTDGASKGVMQTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGIT 192
+FL+ +K VM+ E VV+++ TW ++I + DL ++ R+ GI
Sbjct: 182 LFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAM---RTNGIR 238
Query: 193 VRAMVI----INPGNPTGQCLSE---------ANLREILRFCYQE 224
+AM++ ++P P L E A+L + L +E
Sbjct: 239 KQAMILAGWALDPATPWLSGLGENPAIRAMFVAHLHQALNMAVEE 283
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM---PAIMESFKKFNDEFME 452
V + L+L E G+ V G GFG K G + LP E+ ++E K++ +EF +
Sbjct: 472 VDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEYYEEFKQ 531
Query: 453 Q 453
Sbjct: 532 N 532
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 189 KGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN--LVLLGDEVY 234
K +++A++++NP NPT + + N ++ ++N L ++ DEVY
Sbjct: 241 KDPSIKALIVVNPTNPTSKEF-DTNALNAIKQAVEKNPKLXIISDEVY 287
>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
pdb|3NRA|B Chain B, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
Length = 407
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%)
Query: 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154
+ SGG+ AY++ RG G+R +A + G P D + ++G +
Sbjct: 66 VQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVAR 125
Query: 155 GDGVVLLFHTTWKRQQI-----GVLIINDLQQSVAQARSKGITV-----------RAMVI 198
GD V ++ + +++ G + L A G+ + R +
Sbjct: 126 GDKVAIVQPDYFANRKLVEFFEGEXVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLF 185
Query: 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
NP NP G S + +I + ++ D++Y + Y
Sbjct: 186 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 226
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 192 TVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
V+ ++ +P NP G+ +L +I C + ++L+ DE++Q
Sbjct: 194 NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQ 237
>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|B Chain B, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|C Chain C, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
pdb|3ELE|D Chain D, Crystal Structure Of Amino Transferase (rer070207001803)
From Eubacterium Rectale At 2.10 A Resolution
Length = 398
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 18/187 (9%)
Query: 97 SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156
S L Y+ ++G R +AEF+ G + + ++ T GA+ + + D
Sbjct: 66 SVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYXTXGAAASLSICFRALTSDAYD 125
Query: 157 GVVLL---------FHTTWKRQQIGVLIINDLQQSVAQARSKGIT--VRAMVIINPGNPT 205
+ + F + + V + Q A + I R ++I +P NP+
Sbjct: 126 EFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPS 185
Query: 206 GQCLSEANLREILRFCYQEN------LVLLGDEVYQQNIYQDER-PFVSSKKVLMDMGLP 258
G SE ++++ +++ + ++ DE Y++ +Y + PFV+ +
Sbjct: 186 GTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYS 245
Query: 259 FSKEVQL 265
+SK + L
Sbjct: 246 YSKSLSL 252
>pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta
(Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A
Resolution
Length = 417
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 196 MVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN----IYQDERPFVSSKKV 251
+ + P NPTG +++ L ++ R Q N+ L+ D Y I+ + RP + +
Sbjct: 184 ICVSRPTNPTGNVITDEELXKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNII 243
Query: 252 LM----DMGLPFSK 261
L +GLP S+
Sbjct: 244 LCXSLSKLGLPGSR 257
>pdb|3G0T|A Chain A, Crystal Structure Of Putative Aspartate Aminotransferase
(Np_905498.1) From Porphyromonas Gingivalis W83 At 1.75
A Resolution
pdb|3G0T|B Chain B, Crystal Structure Of Putative Aspartate Aminotransferase
(Np_905498.1) From Porphyromonas Gingivalis W83 At 1.75
A Resolution
Length = 437
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 195 AMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
+++ NP NPT QC ++ LR I + +++++ D Y
Sbjct: 185 SIIYSNPNNPTWQCXTDEELRIIGELATKHDVIVIEDLAY 224
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 139/357 (38%), Gaps = 73/357 (20%)
Query: 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGV--MQTL- 147
H LS G G Y +G +RK +AE R S+ +F++DGA + +Q L
Sbjct: 97 HGLSTVEGYRG-YGLEQGNKTLRKAIAETFYRDLHVKSNE--VFVSDGAQSDISRLQLLL 153
Query: 148 --NCVIRGEG-------DGVVLL-----FHTTWKRQQIGVLIINDLQQSVAQARSKGITV 193
N I + D V++ FH K+ Q V + S +
Sbjct: 154 GSNVTIAVQDPTFPAYIDSSVIIGQTGHFHEKTKKYQNVVYMPCGPNNSFFPDLAMTPRT 213
Query: 194 RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253
+ +P NPTG S L +++ F +++ D Y I +D P + +
Sbjct: 214 DVIFFCSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFDSAYAAFI-EDGSP-----RSIY 267
Query: 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK--------TVDEIYKIASI 305
+ +P ++EV + + SK + G G R G+ + IP + +++ ++I +
Sbjct: 268 E--IPGAREVA-IEVSSFSK-FAGFTGVRLGW---SIIPDELLYSNGFPIINDFHRIVTT 320
Query: 306 ALSPNVPAQIFMGLMVNPLKPGDI----SYEQFVRESKGIL-ESLRRRARMMTDGFNSCR 360
+ N + I + L G + S + +E++ IL ++L + G N
Sbjct: 321 SF--NGASNIAQAGGLACLSSGGLKEIRSVNNYYKENRKILMDTLVSLGLKVYGGVN--- 375
Query: 361 NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417
A Y + + K DVF +LE T I TVPGSGFG
Sbjct: 376 ---------APYLWVHF-----------KGSKSWDVFN--EILENTHIITVPGSGFG 410
>pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|B Chain B, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|C Chain C, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|D Chain D, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
Length = 337
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 196 MVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
+V+ NP NPTGQ LS L ++ Q LL DE Y
Sbjct: 139 VVLANPSNPTGQALSAGELDQL----RQRAGKLLIDETY 173
>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 544
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 400 LRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYE 455
R+ + TGI +PG GFG L E + AI + ++ DE EQY+
Sbjct: 472 FRVADETGIVLLPGRGFGSDRPSGRASLANL-NEYEYAAIGRALRRLADELYEQYK 526
>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase Complexed With L-Histidinol
pdb|1FG7|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase With Pyridoxal-5'-Phosphate
Length = 356
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 130 PELIFLTDGASKGVMQTLNCVIRGEGDGVVLLFHT----TWKRQQIGVL-----IINDLQ 180
PE + ++ GA +G+ + D ++ T + + IGV +++ Q
Sbjct: 75 PEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGXYSVSAETIGVECRTVPTLDNWQ 134
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
+ K V+ + + +P NPTGQ ++ + R +L + +V + DE Y
Sbjct: 135 LDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIV-VADEAY 187
>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Pyridoxal 5'-Phosphate
pdb|1GEX|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Histidinol-Phosphate
pdb|1GEY|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|1IJI|A Chain A, Crystal Structure Of L-histidinol Phosphate
Aminotransferase With Plp
Length = 356
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 130 PELIFLTDGASKGVMQTLNCVIRGEGDGVVLLFHT----TWKRQQIGVL-----IINDLQ 180
PE + ++ GA +G+ + D ++ T + + IGV +++ Q
Sbjct: 75 PEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQ 134
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
+ K V+ + + +P NPTGQ ++ + R +L + +V + DE Y
Sbjct: 135 LDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIV-VADEAY 187
>pdb|2CBF|A Chain A, The X-Ray Structure Of A Cobalamin Biosynthetic Enzyme,
Cobalt Precorrin-4 Methyltransferase, Cbif, From
Bacillus Megaterium, With The His-Tag Cleaved Off
Length = 234
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 133 IFLTDGASKGVMQTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGIT 192
+FL+ +K VM+ E VV+++ TW ++I + DL ++ R+ GI
Sbjct: 165 LFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAM---RTNGIR 221
Query: 193 VRAMVI 198
+AM++
Sbjct: 222 KQAMIL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,955,429
Number of Sequences: 62578
Number of extensions: 588403
Number of successful extensions: 1586
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 85
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)