Query 041151
Match_columns 463
No_of_seqs 187 out of 2633
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 06:42:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tcm_A Alanine aminotransferas 100.0 8.1E-57 2.8E-61 466.4 49.1 451 4-456 21-500 (500)
2 3ihj_A Alanine aminotransferas 100.0 2.3E-57 7.9E-62 469.9 40.4 445 4-455 21-498 (498)
3 1b5p_A Protein (aspartate amin 100.0 1.4E-48 4.8E-53 391.6 32.1 361 10-448 3-383 (385)
4 3h14_A Aminotransferase, class 100.0 4.5E-46 1.5E-50 373.9 34.7 364 10-455 4-387 (391)
5 1j32_A Aspartate aminotransfer 100.0 1.9E-45 6.6E-50 368.8 34.2 365 11-450 3-387 (388)
6 3aow_A Putative uncharacterize 100.0 1.5E-45 5.2E-50 376.8 33.9 372 10-451 53-446 (448)
7 3jtx_A Aminotransferase; NP_28 100.0 2.5E-45 8.5E-50 368.9 32.5 362 11-447 2-395 (396)
8 2x5d_A Probable aminotransfera 100.0 3.5E-45 1.2E-49 370.1 31.6 368 10-450 9-398 (412)
9 3k7y_A Aspartate aminotransfer 100.0 7.6E-45 2.6E-49 365.9 33.5 363 10-449 3-404 (405)
10 3dyd_A Tyrosine aminotransfera 100.0 1.1E-45 3.7E-50 375.8 27.2 373 14-451 30-425 (427)
11 3ele_A Amino transferase; RER0 100.0 7.9E-45 2.7E-49 365.5 32.9 356 10-450 3-396 (398)
12 3fvs_A Kynurenine--oxoglutarat 100.0 1.5E-45 5.1E-50 373.8 27.4 381 7-449 2-421 (422)
13 2r2n_A Kynurenine/alpha-aminoa 100.0 1.6E-44 5.5E-49 366.9 34.5 383 10-450 6-424 (425)
14 3b46_A Aminotransferase BNA3; 100.0 3.5E-45 1.2E-49 374.3 29.0 367 18-445 33-442 (447)
15 1gd9_A Aspartate aminotransfer 100.0 2.1E-44 7.2E-49 361.3 33.2 361 11-449 3-385 (389)
16 1xi9_A Putative transaminase; 100.0 3.1E-44 1E-48 362.5 33.4 370 10-451 11-404 (406)
17 1o4s_A Aspartate aminotransfer 100.0 5.1E-44 1.7E-48 358.9 33.2 355 9-448 12-387 (389)
18 2z61_A Probable aspartate amin 100.0 1.1E-43 3.6E-48 353.9 34.7 353 11-448 2-369 (370)
19 2zc0_A Alanine glyoxylate tran 100.0 3.3E-43 1.1E-47 354.8 38.1 378 10-451 6-405 (407)
20 2o1b_A Aminotransferase, class 100.0 2.5E-44 8.5E-49 363.1 28.7 360 12-449 23-402 (404)
21 3t18_A Aminotransferase class 100.0 2.1E-43 7.2E-48 357.1 34.4 372 10-452 7-412 (413)
22 3e2y_A Kynurenine-oxoglutarate 100.0 2.2E-44 7.5E-49 363.6 26.4 372 12-445 2-408 (410)
23 3fdb_A Beta C-S lyase, putativ 100.0 5.4E-44 1.8E-48 356.6 28.3 337 36-449 21-375 (377)
24 3qgu_A LL-diaminopimelate amin 100.0 2.3E-43 8E-48 360.7 32.2 368 9-457 37-447 (449)
25 2dou_A Probable N-succinyldiam 100.0 1.3E-43 4.3E-48 354.2 29.3 353 17-447 3-375 (376)
26 4f4e_A Aromatic-amino-acid ami 100.0 1.6E-43 5.6E-48 358.9 29.8 363 8-447 21-419 (420)
27 2o0r_A RV0858C (N-succinyldiam 100.0 3E-43 1E-47 355.8 30.3 363 11-451 3-397 (411)
28 3rq1_A Aminotransferase class 100.0 4.8E-43 1.7E-47 355.0 31.8 371 13-450 11-415 (418)
29 3ezs_A Aminotransferase ASPB; 100.0 1.8E-43 6.2E-48 352.8 28.1 351 17-449 3-374 (376)
30 1vp4_A Aminotransferase, putat 100.0 4E-43 1.4E-47 356.6 31.0 375 10-453 20-421 (425)
31 1u08_A Hypothetical aminotrans 100.0 5E-43 1.7E-47 351.1 30.7 357 11-445 8-385 (386)
32 3nra_A Aspartate aminotransfer 100.0 1.1E-42 3.7E-47 350.8 31.2 341 39-450 40-405 (407)
33 2gb3_A Aspartate aminotransfer 100.0 1E-42 3.5E-47 351.7 31.0 362 8-451 13-403 (409)
34 1yiz_A Kynurenine aminotransfe 100.0 4.1E-43 1.4E-47 356.8 27.8 376 10-448 14-427 (429)
35 3dzz_A Putative pyridoxal 5'-p 100.0 2.4E-42 8.2E-47 346.2 31.7 342 36-450 25-389 (391)
36 3kax_A Aminotransferase, class 100.0 3.4E-42 1.2E-46 344.1 31.2 337 37-447 23-382 (383)
37 1bw0_A TAT, protein (tyrosine 100.0 8.3E-43 2.8E-47 353.0 27.1 367 18-451 14-414 (416)
38 3g0t_A Putative aminotransfera 100.0 1E-41 3.5E-46 347.1 34.9 363 16-449 21-436 (437)
39 2zyj_A Alpha-aminodipate amino 100.0 5.1E-42 1.7E-46 345.2 30.5 365 10-452 9-395 (397)
40 3ei9_A LL-diaminopimelate amin 100.0 1.3E-41 4.6E-46 346.0 32.5 360 5-446 20-424 (432)
41 1c7n_A Cystalysin; transferase 100.0 1.3E-41 4.4E-46 342.2 29.5 342 38-452 31-395 (399)
42 3g7q_A Valine-pyruvate aminotr 100.0 1.3E-41 4.5E-46 344.0 29.7 359 20-452 14-415 (417)
43 3fsl_A Aromatic-amino-acid ami 100.0 2.2E-41 7.7E-46 340.1 30.2 357 13-446 3-396 (397)
44 3d6k_A Putative aminotransfera 100.0 1.1E-41 3.8E-46 345.6 28.3 366 10-452 9-420 (422)
45 3l8a_A METC, putative aminotra 100.0 2E-41 7E-46 343.6 28.8 339 37-448 60-420 (421)
46 1v2d_A Glutamine aminotransfer 100.0 3.2E-41 1.1E-45 337.3 29.0 350 11-453 3-374 (381)
47 3ppl_A Aspartate aminotransfer 100.0 4.1E-41 1.4E-45 342.0 30.2 356 28-453 24-423 (427)
48 7aat_A Aspartate aminotransfer 100.0 4.6E-41 1.6E-45 338.5 30.2 362 10-447 2-400 (401)
49 1iay_A ACC synthase 2, 1-amino 100.0 6.8E-40 2.3E-44 333.0 38.1 328 100-449 76-426 (428)
50 4dq6_A Putative pyridoxal phos 100.0 1.2E-40 4.2E-45 333.7 31.9 336 37-447 31-390 (391)
51 1d2f_A MALY protein; aminotran 100.0 1.4E-40 4.9E-45 333.7 30.6 337 38-450 28-389 (390)
52 4h51_A Aspartate aminotransfer 100.0 2E-40 6.8E-45 334.0 31.4 370 9-453 15-420 (420)
53 3piu_A 1-aminocyclopropane-1-c 100.0 8E-40 2.7E-44 333.2 36.2 327 101-451 80-433 (435)
54 3ez1_A Aminotransferase MOCR f 100.0 5.3E-41 1.8E-45 340.6 27.2 367 14-453 6-418 (423)
55 2zy4_A L-aspartate beta-decarb 100.0 5.9E-41 2E-45 350.0 27.1 329 82-456 118-528 (546)
56 3if2_A Aminotransferase; YP_26 100.0 3.8E-40 1.3E-44 336.4 31.5 369 11-452 4-442 (444)
57 2x5f_A Aspartate_tyrosine_phen 100.0 1.7E-40 5.9E-45 337.6 28.5 339 37-450 46-429 (430)
58 4eu1_A Mitochondrial aspartate 100.0 3.9E-41 1.3E-45 340.1 22.9 355 9-447 14-408 (409)
59 3get_A Histidinol-phosphate am 100.0 4.1E-40 1.4E-44 327.3 29.4 341 11-447 4-364 (365)
60 1ajs_A Aspartate aminotransfer 100.0 5.4E-40 1.9E-44 331.9 29.5 367 10-449 4-410 (412)
61 3asa_A LL-diaminopimelate amin 100.0 2.9E-40 9.9E-45 332.8 26.9 356 11-450 3-393 (400)
62 1yaa_A Aspartate aminotransfer 100.0 1.1E-39 3.7E-44 329.8 30.1 366 11-449 4-410 (412)
63 3ly1_A Putative histidinol-pho 100.0 3.3E-39 1.1E-43 319.2 31.8 318 36-449 14-351 (354)
64 3ffh_A Histidinol-phosphate am 100.0 2.7E-39 9.2E-44 321.2 30.8 340 11-446 6-362 (363)
65 3meb_A Aspartate aminotransfer 100.0 3.1E-39 1.1E-43 330.2 31.7 362 10-449 23-443 (448)
66 3f6t_A Aspartate aminotransfer 100.0 2.7E-40 9.1E-45 344.7 22.9 338 82-457 117-532 (533)
67 3op7_A Aminotransferase class 100.0 2.5E-39 8.7E-44 322.8 25.5 307 87-451 46-372 (375)
68 2q7w_A Aspartate aminotransfer 100.0 2.6E-39 9E-44 324.9 25.6 362 13-446 3-395 (396)
69 3euc_A Histidinol-phosphate am 100.0 1.5E-38 5.1E-43 316.3 30.7 318 37-448 29-366 (367)
70 3b1d_A Betac-S lyase; HET: PLP 100.0 2.2E-42 7.4E-47 347.4 0.0 337 39-448 32-391 (392)
71 1lc5_A COBD, L-threonine-O-3-p 100.0 1.4E-37 4.8E-42 309.1 29.9 324 32-450 18-360 (364)
72 3bwn_A AT1G70560, L-tryptophan 100.0 5.2E-39 1.8E-43 322.8 18.6 320 36-449 20-386 (391)
73 2ay1_A Aroat, aromatic amino a 100.0 7.3E-38 2.5E-42 314.3 26.9 360 12-446 2-392 (394)
74 1fg7_A Histidinol phosphate am 100.0 1.8E-37 6.2E-42 307.6 28.7 285 99-446 51-354 (356)
75 3ftb_A Histidinol-phosphate am 100.0 4.8E-37 1.6E-41 304.4 30.5 319 35-448 23-359 (361)
76 2hox_A ALLIIN lyase 1; cystein 100.0 8.2E-39 2.8E-43 324.8 15.4 308 82-448 71-423 (427)
77 3cq5_A Histidinol-phosphate am 100.0 5.9E-36 2E-40 298.0 32.7 304 82-448 45-366 (369)
78 3hdo_A Histidinol-phosphate am 100.0 1.2E-36 4E-41 302.0 25.3 339 7-451 2-356 (360)
79 3p1t_A Putative histidinol-pho 100.0 1E-35 3.5E-40 292.0 29.3 307 33-447 11-334 (337)
80 3fkd_A L-threonine-O-3-phospha 100.0 4.3E-36 1.5E-40 296.7 26.4 311 36-449 13-341 (350)
81 3a2b_A Serine palmitoyltransfe 100.0 1.1E-33 3.6E-38 284.4 30.3 314 82-450 59-392 (398)
82 1uu1_A Histidinol-phosphate am 100.0 7E-34 2.4E-38 279.3 23.5 300 38-446 19-334 (335)
83 3tqx_A 2-amino-3-ketobutyrate 100.0 4.3E-31 1.5E-35 265.0 29.9 314 82-450 59-396 (399)
84 1fc4_A 2-amino-3-ketobutyrate 100.0 1.7E-31 5.8E-36 268.5 25.2 313 82-450 61-397 (401)
85 1t3i_A Probable cysteine desul 100.0 2.1E-31 7.1E-36 269.0 24.8 321 37-452 26-415 (420)
86 1kmj_A Selenocysteine lyase; p 100.0 4.3E-31 1.5E-35 265.4 26.3 320 37-450 21-405 (406)
87 1bs0_A Protein (8-amino-7-oxon 100.0 1.4E-30 4.9E-35 260.2 27.0 304 82-446 55-383 (384)
88 2dr1_A PH1308 protein, 386AA l 100.0 5.1E-30 1.7E-34 255.9 28.4 306 82-453 32-382 (386)
89 1e5e_A MGL, methionine gamma-l 100.0 3.4E-31 1.1E-35 267.0 19.7 280 99-454 52-399 (404)
90 2bwn_A 5-aminolevulinate synth 100.0 2.8E-30 9.4E-35 259.8 25.5 310 82-449 62-399 (401)
91 1eg5_A Aminotransferase; PLP-d 100.0 1.3E-30 4.3E-35 260.0 20.7 308 82-452 14-378 (384)
92 2w8t_A SPT, serine palmitoyltr 100.0 1.1E-29 3.9E-34 257.7 26.5 314 82-452 80-417 (427)
93 3kki_A CAI-1 autoinducer synth 100.0 3.7E-29 1.3E-33 252.4 29.3 306 82-449 75-403 (409)
94 1vjo_A Alanine--glyoxylate ami 100.0 3E-29 1E-33 251.3 24.9 300 81-447 45-392 (393)
95 1elu_A L-cysteine/L-cystine C- 100.0 4.3E-30 1.5E-34 256.8 18.2 299 82-446 29-388 (390)
96 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 2.1E-30 7.2E-35 257.5 15.7 302 82-449 22-369 (371)
97 2huf_A Alanine glyoxylate amin 100.0 3.9E-29 1.3E-33 250.4 24.8 302 82-452 31-385 (393)
98 2ez2_A Beta-tyrosinase, tyrosi 100.0 1.2E-28 3.9E-33 252.3 28.5 362 11-451 6-432 (456)
99 1sff_A 4-aminobutyrate aminotr 100.0 3.6E-30 1.2E-34 260.9 17.2 312 82-450 59-424 (426)
100 1svv_A Threonine aldolase; str 100.0 2.8E-28 9.6E-33 240.7 29.3 308 82-450 27-358 (359)
101 4eb5_A Probable cysteine desul 100.0 4.8E-29 1.7E-33 248.5 23.9 314 82-458 13-381 (382)
102 1m32_A 2-aminoethylphosphonate 100.0 1.8E-29 6.1E-34 249.8 20.1 302 82-449 16-364 (366)
103 3zrp_A Serine-pyruvate aminotr 100.0 4.4E-29 1.5E-33 248.8 23.1 302 81-451 13-364 (384)
104 2z9v_A Aspartate aminotransfer 100.0 6.6E-29 2.3E-33 248.6 23.6 303 82-450 21-371 (392)
105 2ch1_A 3-hydroxykynurenine tra 100.0 7.6E-29 2.6E-33 248.5 23.8 305 81-454 29-387 (396)
106 2aeu_A Hypothetical protein MJ 100.0 4.3E-28 1.5E-32 241.8 27.0 324 32-450 21-371 (374)
107 2eh6_A Acoat, acetylornithine 100.0 1.9E-29 6.3E-34 251.2 17.0 314 36-446 26-374 (375)
108 1iug_A Putative aspartate amin 100.0 3.2E-29 1.1E-33 246.9 18.5 297 82-450 13-348 (352)
109 3lvm_A Cysteine desulfurase; s 100.0 3.8E-29 1.3E-33 253.1 19.2 306 82-452 35-401 (423)
110 4hvk_A Probable cysteine desul 100.0 4.3E-28 1.5E-32 241.1 26.2 307 82-453 13-376 (382)
111 3pj0_A LMO0305 protein; struct 100.0 1.3E-29 4.5E-34 250.8 14.8 300 82-446 28-358 (359)
112 3kgw_A Alanine-glyoxylate amin 100.0 1.2E-28 4E-33 246.5 21.9 304 80-451 33-389 (393)
113 3cai_A Possible aminotransfera 100.0 1.5E-28 5.2E-33 247.3 22.2 309 82-445 39-404 (406)
114 3lws_A Aromatic amino acid bet 100.0 9.6E-29 3.3E-33 244.5 20.2 285 100-447 40-356 (357)
115 3f9t_A TDC, L-tyrosine decarbo 100.0 1.1E-27 3.8E-32 239.4 27.4 308 82-448 43-396 (397)
116 4adb_A Succinylornithine trans 100.0 2E-28 7E-33 246.3 21.8 304 82-452 57-402 (406)
117 2dkj_A Serine hydroxymethyltra 100.0 2.1E-27 7.1E-32 238.9 28.5 331 28-449 13-387 (407)
118 3ruy_A Ornithine aminotransfer 100.0 8.5E-29 2.9E-33 248.1 18.0 296 82-447 54-391 (392)
119 2yrr_A Aminotransferase, class 100.0 3E-28 1E-32 239.8 20.9 298 82-448 12-351 (353)
120 3i4j_A Aminotransferase, class 100.0 8.1E-28 2.8E-32 244.2 24.1 326 82-450 47-428 (430)
121 1v72_A Aldolase; PLP-dependent 100.0 4.1E-28 1.4E-32 239.4 21.1 306 82-451 21-354 (356)
122 1ax4_A Tryptophanase; tryptoph 100.0 2E-27 6.7E-32 243.8 26.5 365 11-451 7-442 (467)
123 2bkw_A Alanine-glyoxylate amin 100.0 1.7E-27 5.8E-32 237.5 23.8 301 82-449 17-383 (385)
124 3isl_A Purine catabolism prote 100.0 3.3E-27 1.1E-31 238.0 25.7 279 109-450 46-390 (416)
125 2ord_A Acoat, acetylornithine 100.0 3.8E-28 1.3E-32 243.9 18.6 299 82-449 58-396 (397)
126 3nnk_A Ureidoglycine-glyoxylat 100.0 2.5E-27 8.4E-32 238.6 24.4 302 80-450 23-390 (411)
127 1jg8_A L-ALLO-threonine aldola 100.0 1E-27 3.6E-32 236.0 21.1 301 82-449 17-345 (347)
128 3f0h_A Aminotransferase; RER07 100.0 4.7E-27 1.6E-31 233.8 25.8 303 81-449 30-373 (376)
129 2eo5_A 419AA long hypothetical 100.0 2.9E-27 9.8E-32 239.4 23.2 304 82-450 61-418 (419)
130 3ffr_A Phosphoserine aminotran 100.0 7.4E-27 2.5E-31 230.7 25.2 297 82-447 16-361 (362)
131 1ibj_A CBL, cystathionine beta 100.0 4.9E-28 1.7E-32 247.5 15.3 294 99-449 123-461 (464)
132 1vef_A Acetylornithine/acetyl- 100.0 1.7E-27 5.7E-32 238.9 18.2 300 82-447 63-394 (395)
133 3vax_A Putative uncharacterize 99.9 6.7E-28 2.3E-32 242.0 14.4 304 82-449 33-399 (400)
134 3dxv_A Alpha-amino-epsilon-cap 99.9 3.8E-27 1.3E-31 239.9 19.9 312 82-450 61-425 (439)
135 2pb2_A Acetylornithine/succiny 99.9 1.1E-26 3.8E-31 235.2 23.1 303 82-450 75-418 (420)
136 1zod_A DGD, 2,2-dialkylglycine 99.9 8.7E-27 3E-31 236.7 21.3 319 82-450 61-432 (433)
137 3gju_A Putative aminotransfera 99.9 3.7E-26 1.3E-30 234.1 26.1 324 82-452 69-458 (460)
138 1w23_A Phosphoserine aminotran 99.9 3.1E-27 1.1E-31 233.7 16.7 298 82-449 15-359 (360)
139 2oga_A Transaminase; PLP-depen 99.9 5.3E-27 1.8E-31 235.9 18.7 310 38-450 30-396 (399)
140 1rv3_A Serine hydroxymethyltra 99.9 7.1E-26 2.4E-30 233.2 27.4 347 10-449 20-430 (483)
141 1b9h_A AHBA synthase, protein 99.9 1.3E-26 4.4E-31 231.9 21.2 302 82-449 16-387 (388)
142 1s0a_A Adenosylmethionine-8-am 99.9 1.5E-26 5.1E-31 234.8 21.7 304 82-449 61-423 (429)
143 4a6r_A Omega transaminase; tra 99.9 5.3E-26 1.8E-30 232.9 25.8 321 82-455 68-454 (459)
144 3n5m_A Adenosylmethionine-8-am 99.9 2.5E-26 8.7E-31 234.7 22.9 318 82-449 67-451 (452)
145 3nx3_A Acoat, acetylornithine 99.9 1.1E-26 3.6E-31 233.2 19.7 301 82-449 54-394 (395)
146 2po3_A 4-dehydrase; external a 99.9 6E-26 2.1E-30 230.0 24.4 302 82-453 31-389 (424)
147 2rfv_A Methionine gamma-lyase; 99.9 3.4E-26 1.2E-30 229.9 21.7 174 107-322 64-259 (398)
148 2oqx_A Tryptophanase; lyase, p 99.9 1.1E-26 3.7E-31 238.3 17.9 367 13-451 7-443 (467)
149 4ffc_A 4-aminobutyrate aminotr 99.9 2.2E-26 7.5E-31 235.2 20.1 312 82-451 82-450 (453)
150 3l44_A Glutamate-1-semialdehyd 99.9 4.1E-26 1.4E-30 231.9 19.6 315 82-452 73-432 (434)
151 3ecd_A Serine hydroxymethyltra 99.9 1.2E-24 4.2E-29 219.8 30.2 350 9-450 7-397 (425)
152 3n0l_A Serine hydroxymethyltra 99.9 2E-24 6.7E-29 217.9 29.3 309 82-449 38-388 (417)
153 1z7d_A Ornithine aminotransfer 99.9 1.6E-25 5.4E-30 227.6 19.4 307 82-453 83-432 (433)
154 3a9z_A Selenocysteine lyase; P 99.9 2.9E-25 9.9E-30 225.3 21.3 303 82-451 31-429 (432)
155 3h7f_A Serine hydroxymethyltra 99.9 4.3E-24 1.5E-28 217.9 29.2 346 10-449 21-413 (447)
156 2c0r_A PSAT, phosphoserine ami 99.9 1.1E-25 3.8E-30 222.9 16.6 294 82-450 16-361 (362)
157 2vi8_A Serine hydroxymethyltra 99.9 3.4E-24 1.1E-28 215.3 27.4 309 82-450 36-387 (405)
158 3uwc_A Nucleotide-sugar aminot 99.9 2.6E-25 9E-30 221.1 18.9 295 82-449 19-370 (374)
159 3k28_A Glutamate-1-semialdehyd 99.9 1.2E-25 4E-30 228.2 16.4 313 82-450 71-427 (429)
160 3gbx_A Serine hydroxymethyltra 99.9 4.8E-24 1.6E-28 215.1 28.0 312 82-449 43-395 (420)
161 3oks_A 4-aminobutyrate transam 99.9 4.9E-25 1.7E-29 225.1 20.8 313 82-449 79-450 (451)
162 3dod_A Adenosylmethionine-8-am 99.9 6.1E-25 2.1E-29 224.3 21.1 314 82-451 62-444 (448)
163 2fyf_A PSAT, phosphoserine ami 99.9 3.2E-25 1.1E-29 222.7 18.7 296 82-449 52-397 (398)
164 3mad_A Sphingosine-1-phosphate 99.9 2.3E-24 7.8E-29 223.9 25.4 300 100-453 128-472 (514)
165 2oat_A Ornithine aminotransfer 99.9 6.7E-25 2.3E-29 223.3 21.0 304 82-449 94-438 (439)
166 1mdo_A ARNB aminotransferase; 99.9 1.1E-24 3.8E-29 218.0 22.2 295 82-450 19-386 (393)
167 1qz9_A Kynureninase; kynurenin 99.9 1.3E-24 4.4E-29 219.3 22.1 294 82-449 41-401 (416)
168 3i5t_A Aminotransferase; pyrid 99.9 1.1E-24 3.8E-29 223.9 22.0 319 82-453 72-457 (476)
169 3hmu_A Aminotransferase, class 99.9 1.1E-24 3.8E-29 223.6 21.8 320 82-453 73-455 (472)
170 3cog_A Cystathionine gamma-lya 99.9 4.2E-24 1.4E-28 215.0 24.4 274 102-450 63-398 (403)
171 3a8u_X Omega-amino acid--pyruv 99.9 5.2E-24 1.8E-28 217.4 25.4 311 82-450 68-447 (449)
172 3dr4_A Putative perosamine syn 99.9 1E-24 3.4E-29 218.5 19.6 308 38-447 22-390 (391)
173 1cs1_A CGS, protein (cystathio 99.9 1.4E-23 4.8E-28 209.9 27.8 270 107-450 52-383 (386)
174 2c81_A Glutamine-2-deoxy-scyll 99.9 6.5E-24 2.2E-28 214.6 25.2 308 82-450 15-414 (418)
175 1wyu_B Glycine dehydrogenase s 99.9 3E-24 1E-28 220.6 23.0 307 82-449 79-440 (474)
176 3mc6_A Sphingosine-1-phosphate 99.9 8.4E-24 2.9E-28 218.6 26.2 313 82-452 77-439 (497)
177 3fq8_A Glutamate-1-semialdehyd 99.9 1E-24 3.4E-29 221.2 18.8 314 82-449 70-426 (427)
178 3tfu_A Adenosylmethionine-8-am 99.9 1.7E-24 5.8E-29 221.4 19.7 306 82-450 93-453 (457)
179 2cy8_A D-phgat, D-phenylglycin 99.9 2.3E-24 7.8E-29 220.3 19.5 312 82-452 75-437 (453)
180 3e9k_A Kynureninase; kynurenin 99.9 3.3E-24 1.1E-28 219.9 20.5 275 110-450 114-461 (465)
181 2dgk_A GAD-beta, GADB, glutama 99.9 2.3E-23 7.9E-28 212.8 26.2 320 82-452 55-436 (452)
182 3ndn_A O-succinylhomoserine su 99.9 3.1E-23 1.1E-27 209.1 26.1 272 111-447 81-413 (414)
183 1pff_A Methionine gamma-lyase; 99.9 4.5E-24 1.5E-28 208.7 18.6 169 111-321 2-193 (331)
184 2epj_A Glutamate-1-semialdehyd 99.9 8.4E-24 2.9E-28 214.9 20.9 312 82-450 74-431 (434)
185 2fnu_A Aminotransferase; prote 99.9 1.9E-23 6.7E-28 207.4 22.8 300 82-450 12-372 (375)
186 3frk_A QDTB; aminotransferase, 99.9 2.9E-24 1E-28 213.7 15.8 296 82-450 16-368 (373)
187 2cjg_A L-lysine-epsilon aminot 99.9 1.5E-23 5.1E-28 214.0 21.2 304 82-450 72-448 (449)
188 1qgn_A Protein (cystathionine 99.9 1.9E-22 6.4E-27 204.7 29.0 271 109-449 116-444 (445)
189 3ke3_A Putative serine-pyruvat 99.9 8.6E-22 2.9E-26 196.5 30.5 283 110-451 34-377 (379)
190 2cb1_A O-acetyl homoserine sul 99.9 2.1E-22 7.3E-27 203.2 26.0 273 101-444 48-410 (412)
191 3hbx_A GAD 1, glutamate decarb 99.9 2.5E-22 8.5E-27 207.7 27.0 317 82-452 69-446 (502)
192 4e77_A Glutamate-1-semialdehyd 99.9 9.5E-24 3.3E-28 214.1 16.1 312 82-449 71-428 (429)
193 2e7u_A Glutamate-1-semialdehyd 99.9 5E-23 1.7E-27 208.5 20.8 307 82-446 70-423 (424)
194 3qhx_A Cystathionine gamma-syn 99.9 3.2E-22 1.1E-26 200.5 26.0 270 109-447 68-391 (392)
195 1gc0_A Methionine gamma-lyase; 99.9 3.1E-22 1E-26 201.1 23.8 269 107-449 65-396 (398)
196 3nyt_A Aminotransferase WBPE; 99.9 2.2E-23 7.4E-28 207.1 15.2 290 82-446 15-360 (367)
197 1o69_A Aminotransferase; struc 99.9 6E-22 2E-26 198.6 24.8 308 82-449 11-386 (394)
198 3vp6_A Glutamate decarboxylase 99.9 4.2E-21 1.5E-25 198.8 31.7 331 82-450 108-505 (511)
199 3acz_A Methionine gamma-lyase; 99.9 4.4E-22 1.5E-26 199.4 23.4 266 108-448 60-387 (389)
200 2okj_A Glutamate decarboxylase 99.9 3E-21 1E-25 199.8 29.0 314 99-450 120-502 (504)
201 1js3_A DDC;, DOPA decarboxylas 99.9 1.3E-21 4.3E-26 201.7 25.9 322 82-454 87-478 (486)
202 3ri6_A O-acetylhomoserine sulf 99.9 1.3E-21 4.5E-26 197.8 24.9 272 108-447 83-429 (430)
203 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 2.7E-21 9.3E-26 196.5 25.6 293 82-448 42-434 (437)
204 1n8p_A Cystathionine gamma-lya 99.9 4.3E-22 1.5E-26 199.6 18.9 200 108-361 56-276 (393)
205 2a7v_A Serine hydroxymethyltra 99.9 1.3E-20 4.4E-25 192.8 29.5 310 82-450 67-441 (490)
206 4e1o_A HDC, histidine decarbox 99.9 1.5E-20 5.3E-25 193.3 26.7 321 82-451 92-479 (481)
207 3ju7_A Putative PLP-dependent 99.9 5E-21 1.7E-25 190.8 22.3 299 82-449 15-374 (377)
208 2qma_A Diaminobutyrate-pyruvat 99.9 1.3E-20 4.3E-25 194.8 25.9 322 82-449 113-495 (497)
209 2fq6_A Cystathionine beta-lyas 99.9 5.5E-21 1.9E-25 192.6 22.0 198 109-362 84-303 (415)
210 3k40_A Aromatic-L-amino-acid d 99.9 3.1E-20 1.1E-24 190.6 25.9 308 99-452 101-473 (475)
211 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.3E-20 4.5E-25 192.6 20.7 287 109-447 131-455 (456)
212 1ohv_A 4-aminobutyrate aminotr 99.9 6.2E-21 2.1E-25 195.7 18.0 309 82-449 81-470 (472)
213 1wyu_A Glycine dehydrogenase ( 99.9 1.7E-20 5.7E-25 190.8 20.0 274 106-447 103-437 (438)
214 2x3l_A ORN/Lys/Arg decarboxyla 99.9 7.2E-21 2.5E-25 193.8 17.3 268 103-450 53-353 (446)
215 3nmy_A Xometc, cystathionine g 99.9 7.6E-20 2.6E-24 183.5 24.4 270 109-448 69-397 (400)
216 3b8x_A WBDK, pyridoxamine 5-ph 99.8 2.9E-19 1E-23 178.6 26.5 291 81-443 13-389 (390)
217 2jis_A Cysteine sulfinic acid 99.8 5.9E-19 2E-23 183.1 28.7 323 82-448 121-513 (515)
218 2yky_A Beta-transaminase; tran 99.7 1.3E-22 4.5E-27 206.4 0.0 312 82-451 118-461 (465)
219 2ctz_A O-acetyl-L-homoserine s 99.8 5E-19 1.7E-23 178.9 22.1 141 109-288 60-220 (421)
220 1c4k_A Protein (ornithine deca 99.8 4.4E-19 1.5E-23 189.4 19.2 302 108-450 174-566 (730)
221 3hvy_A Cystathionine beta-lyas 99.8 1.3E-18 4.5E-23 175.2 20.9 230 83-366 47-324 (427)
222 3i16_A Aluminum resistance pro 99.8 2E-18 6.8E-23 173.8 21.9 229 84-366 47-324 (427)
223 3jzl_A Putative cystathionine 99.8 3.1E-18 1.1E-22 171.8 22.9 229 83-366 32-307 (409)
224 3ht4_A Aluminum resistance pro 99.8 2.5E-18 8.5E-23 173.9 21.4 212 111-365 65-312 (431)
225 2vyc_A Biodegradative arginine 99.8 9.1E-18 3.1E-22 180.7 22.6 298 110-450 208-605 (755)
226 3e77_A Phosphoserine aminotran 99.8 2E-17 6.7E-22 163.7 19.3 294 82-449 25-374 (377)
227 3m5u_A Phosphoserine aminotran 99.7 2.8E-16 9.6E-21 154.8 17.9 290 82-450 17-360 (361)
228 3qm2_A Phosphoserine aminotran 99.7 8.6E-17 2.9E-21 159.9 14.4 292 81-449 38-384 (386)
229 3n75_A LDC, lysine decarboxyla 99.7 2.2E-16 7.4E-21 167.3 18.2 297 109-449 197-559 (715)
230 4ao9_A Beta-phenylalanine amin 99.6 9.7E-15 3.3E-19 147.5 16.9 310 82-451 105-447 (454)
231 4e3q_A Pyruvate transaminase; 99.5 4.9E-13 1.7E-17 136.1 22.8 320 82-453 85-471 (473)
232 3ou5_A Serine hydroxymethyltra 99.5 7.5E-12 2.6E-16 123.4 28.0 312 82-448 67-439 (490)
233 4atq_A 4-aminobutyrate transam 99.5 4.5E-13 1.5E-17 135.9 17.5 320 82-449 82-454 (456)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 2.3E-11 7.9E-16 120.4 27.6 299 117-458 123-469 (501)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.4 5.7E-11 2E-15 118.9 27.5 302 109-455 96-448 (450)
236 4a0g_A Adenosylmethionine-8-am 99.4 9.5E-13 3.2E-17 142.7 11.7 214 192-450 594-828 (831)
237 1now_A Beta-hexosaminidase bet 76.2 13 0.00044 37.4 10.2 105 124-230 100-238 (507)
238 2gjx_A Beta-hexosaminidase alp 69.4 24 0.00081 35.5 10.2 105 124-230 94-233 (507)
239 3gh5_A HEX1, beta-hexosaminida 67.5 22 0.00075 35.9 9.5 107 122-230 122-274 (525)
240 1jak_A Beta-N-acetylhexosamini 61.0 23 0.00078 35.7 8.2 105 124-230 100-249 (512)
241 4f6o_A Metacaspase-1; rossmann 58.3 15 0.00051 35.0 5.9 112 108-239 72-200 (350)
242 3rcn_A Beta-N-acetylhexosamini 56.5 45 0.0015 33.8 9.5 105 123-230 79-242 (543)
243 3ozo_A N-acetylglucosaminidase 49.9 1.3E+02 0.0044 30.6 11.6 97 132-230 142-274 (572)
244 1c7s_A Beta-N-acetylhexosamini 49.8 46 0.0016 35.7 8.6 105 124-230 262-418 (858)
245 2epl_X N-acetyl-beta-D-glucosa 46.0 48 0.0016 34.3 7.9 106 124-230 39-163 (627)
246 1g94_A Alpha-amylase; beta-alp 39.5 43 0.0015 32.8 6.2 29 210-238 63-91 (448)
247 1hjs_A Beta-1,4-galactanase; 4 38.9 66 0.0023 30.2 7.1 37 201-237 49-85 (332)
248 2yl5_A Beta-N-acetylhexosamini 37.8 24 0.00082 34.8 4.0 29 202-230 85-113 (442)
249 3bij_A Uncharacterized protein 35.4 1.1E+02 0.0039 27.7 8.1 103 108-237 28-139 (285)
250 2yl6_A Beta-N-acetylhexosamini 34.1 23 0.00079 34.8 3.1 28 203-230 83-110 (434)
251 1fob_A Beta-1,4-galactanase; B 31.0 1.3E+02 0.0044 28.1 7.8 37 201-237 49-85 (334)
252 4g81_D Putative hexonate dehyd 28.9 3.1E+02 0.011 24.3 11.7 89 128-220 7-116 (255)
253 4gqr_A Pancreatic alpha-amylas 28.2 35 0.0012 33.6 3.4 28 210-237 75-102 (496)
254 1vhx_A Putative holliday junct 26.2 96 0.0033 25.3 5.2 60 171-236 40-102 (150)
255 4f21_A Carboxylesterase/phosph 25.2 3.4E+02 0.012 23.6 11.3 46 105-150 106-151 (246)
256 4af8_A Metacaspase MCA2; hydro 24.8 97 0.0033 29.5 5.6 109 110-239 113-239 (367)
257 4fgs_A Probable dehydrogenase 24.7 3.8E+02 0.013 24.0 9.6 89 129-220 28-133 (273)
258 2hfn_A Synechocystis photorece 23.4 2.8E+02 0.0097 22.5 7.6 98 193-303 7-117 (153)
259 1ur4_A Galactanase; hydrolase, 23.3 1.2E+02 0.004 29.4 5.9 30 209-238 86-115 (399)
260 4iin_A 3-ketoacyl-acyl carrier 22.1 4E+02 0.014 23.3 9.9 34 126-160 25-58 (271)
261 4fn4_A Short chain dehydrogena 21.9 4.1E+02 0.014 23.5 9.0 28 132-161 9-37 (254)
262 1yht_A DSPB; beta barrel, hydr 21.5 62 0.0021 30.9 3.6 25 206-230 89-113 (367)
263 1x0p_A Hypothetical protein TL 21.2 2.4E+02 0.0084 22.6 6.6 99 193-303 4-114 (143)
264 3dhu_A Alpha-amylase; structur 21.1 1.4E+02 0.0049 28.9 6.3 28 210-237 82-109 (449)
265 2ya0_A Putative alkaline amylo 21.1 51 0.0017 34.7 3.1 27 211-237 254-280 (714)
266 2yvq_A Carbamoyl-phosphate syn 21.0 3.2E+02 0.011 21.8 10.3 36 192-231 96-131 (143)
267 3gaf_A 7-alpha-hydroxysteroid 20.1 4.3E+02 0.015 22.9 9.3 31 129-161 11-42 (256)
No 1
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=8.1e-57 Score=466.42 Aligned_cols=451 Identities=49% Similarity=0.867 Sum_probs=390.5
Q ss_pred CCCChhhhhhhhhhccchhhhhHHHHHHHHHHh-----cc----cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCC
Q 041151 4 KALDYESMNENVKKVQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDD 74 (463)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (463)
+.+++..+|+++.++.+...+.+...+++++++ |. ++|++++|+|..+|+.|..++++++.+.+.|..++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~ 100 (500)
T 3tcm_A 21 ATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQR 100 (500)
T ss_dssp CCCCGGGSCHHHHHCCCGGGSHHHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGC
T ss_pred ccCCHHHhCHHHHhhhhHhcCHHHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccC
Confidence 467889999999999999999999999999988 76 899999999999999999999999999999999877
Q ss_pred CCCCCCCcHHHHHHHHHHhhhcCC-CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC
Q 041151 75 PNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 75 ~~~~~~~p~~~~~a~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
+..+..+|..+++++.+.+....+ ....|+++.|..++|+++++++.+++|+++++++|++|+|+++++..++.+++.+
T Consensus 101 ~~~~~~~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 180 (500)
T 3tcm_A 101 EEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN 180 (500)
T ss_dssp TTHHHHSCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS
T ss_pred CCCcccCCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC
Confidence 653344699999999888877533 5689999999999999999999999999999999999999999999999999525
Q ss_pred CCCEEEEc-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 154 EGDGVVLL-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 154 ~gd~Vlvp-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
+||.|+++ .|+++ ...+|++|+ +.|++.+++....+.++++|++++||||||.++|.+++
T Consensus 181 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l 259 (500)
T 3tcm_A 181 EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLET-SDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQ 259 (500)
T ss_dssp TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCH-HHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHH
T ss_pred CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCH-HHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHH
Confidence 99999997 56665 334689999 99999999865555579999999999999999999999
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|+++|++++++||+||+|..+.|+++.+..++..+.++++.. .++.++|+++||||+|+|++|+|+||+++.+.+++
T Consensus 260 ~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 338 (500)
T 3tcm_A 260 YDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYG-EEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAP 338 (500)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCS-SSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTT
T ss_pred HHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccc-cCCeEEEEEecCCccCCCCCccceEEEEEeCCCHH
Confidence 99999999999999999999999885445667887776665211 12346899999999975789999999985333888
Q ss_pred HHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEe
Q 041151 295 TVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSF 374 (463)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~ 374 (463)
+++.+.+.....++++.+.|.++..+++.....+..|+.+.++.+.++++++++++++.+.|+++||+.+..|++++|+|
T Consensus 339 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~ 418 (500)
T 3tcm_A 339 VREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVF 418 (500)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEEC
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEe
Confidence 99999888766788899999999999986554567888888888899999999999999999999999999999999999
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
+++.+|...++..+..+..++..++..+|+++||.+.||+.|+..++..++|++++.+++++++++++|++++++++++|
T Consensus 419 ~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 419 PQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEY 498 (500)
T ss_dssp CEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888887666555556666677778899999999999999997567779999999888999999999999999999998
Q ss_pred cc
Q 041151 455 ED 456 (463)
Q Consensus 455 ~~ 456 (463)
++
T Consensus 499 ~~ 500 (500)
T 3tcm_A 499 RD 500 (500)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 2
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-57 Score=469.92 Aligned_cols=445 Identities=45% Similarity=0.816 Sum_probs=362.5
Q ss_pred CCCChhhhhhhhhhccchhhhhHHHHHHHHHHhcc--------cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCC
Q 041151 4 KALDYESMNENVKKVQYAVRGELYLRASELQKEGK--------KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDP 75 (463)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (463)
+.+++..+|+++.++.+.+++.+...+.+++++++ ++|.+++|+|..+|+.+.+++|+++++.+.|..++..
T Consensus 21 ~~~~~~~~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~ 100 (498)
T 3ihj_A 21 QSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSP 100 (498)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCS
T ss_pred ccCCHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcc
Confidence 34566789999999999999999999999998755 8999999999999999999999999999999998643
Q ss_pred CCCCCCcHHHHHHHHHHhhhcCC-CCCccCCCCCCHHHHHHHHHHHHHhc-CCCCCCCcEEEcCCcHHHHHHHHHHHhcC
Q 041151 76 NVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRD-GYPSDPELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 76 ~~~~~~p~~~~~a~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~-g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
.+|..+++++.+++..... ....|+++.|.+++|++|++++.+++ |+++++++|++|+|+++++..++.+++ +
T Consensus 101 ----~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-~ 175 (498)
T 3ihj_A 101 ----SFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-S 175 (498)
T ss_dssp ----SSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-C
T ss_pred ----cCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-C
Confidence 3699999999888887532 46789999999999999999999888 499999999999999999999999997 8
Q ss_pred CCC----EEEEc-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 154 EGD----GVVLL-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 154 ~gd----~Vlvp-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
+|| .|+++ .|+++ ...+|++|+ ++|++.+++... +.++++|+++|||||||.++|
T Consensus 176 ~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~-~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s 253 (498)
T 3ihj_A 176 GGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNV-NELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQS 253 (498)
T ss_dssp CCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCH-HHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCC
T ss_pred CCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCH-HHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCC
Confidence 875 99997 56655 344689999 999999987421 124899999999999999999
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
.+++++|+++|++|+++||+||+|..+.|+++.++.++..+.++++.+.++..++|+++||||+|+|++|+|+||+++..
T Consensus 254 ~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~ 333 (498)
T 3ihj_A 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN 333 (498)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec
Confidence 99999999999999999999999999999544466788776654410001334689999999998568999999998544
Q ss_pred CChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCce
Q 041151 291 IPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGA 370 (463)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~ 370 (463)
+++++++.+.+.....++++.+.|.++..+++++..+++.|..+.++.+.+++.|+++++++.+.|+++||+.+..|+|+
T Consensus 334 ~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg 413 (498)
T 3ihj_A 334 LHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGA 413 (498)
T ss_dssp CCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeE
Confidence 58999999988877677889999999999998765556788888888888999999999999999999999999999999
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+|+|+++.+|...+......+..++..++..+|+++||.+.||+.|+..++..++|++++.+++++++++++|+++++++
T Consensus 414 ~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 414 MYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp SEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999888887655444445555555557888999999999999999755677999999988899999999999999999
Q ss_pred HHHhc
Q 041151 451 MEQYE 455 (463)
Q Consensus 451 ~~~~~ 455 (463)
+++|+
T Consensus 494 ~~~~~ 498 (498)
T 3ihj_A 494 LEKYA 498 (498)
T ss_dssp HHHC-
T ss_pred HHHhC
Confidence 99875
No 3
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=1.4e-48 Score=391.62 Aligned_cols=361 Identities=22% Similarity=0.373 Sum_probs=300.7
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++..++++.++++...+.++...++++|+|+.|+|+. +. |+.+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~ 53 (385)
T 1b5p_A 3 GLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDF------------------------DT-----PEHVKEAA 53 (385)
T ss_dssp CCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CC-----CHHHHHHH
T ss_pred hhhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCC------------------------CC-----CHHHHHHH
Confidence 36889999999999999998888887788899999999985 33 78888888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.. ....|++..|..++|+++++++.+.+|+.+++++|++|+|+++++..++.+++ +|||+|+++
T Consensus 54 ~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~ 129 (385)
T 1b5p_A 54 RRALAQ---GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLSPYWVSYP 129 (385)
T ss_dssp HHHHHT---TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHH
T ss_pred HHHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc-CCCCEEEEcCCCchhHH
Confidence 887765 34579988899999999999999889998999999999999999999999998 899999997
Q ss_pred -----cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +. +++.+|+ +.|++++++ ++++|++++||||||.++|.+++++|+++|+++|++||+
T Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 202 (385)
T 1b5p_A 130 EMVRFAGGVVVEVETLPEEGFVPDP-ERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVS 202 (385)
T ss_dssp HHHHHTTCEEEEEECCGGGTTCCCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCEEEEeecCcccCCCCCH-HHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 56665 22 4678999 999998876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|+.+.++ + +..++..+ +. +++|+++||||++ |++|+|+||++ +++++++.+.+... ..+++
T Consensus 203 De~~~~~~~~-~-~~~~~~~~--------~~-~~~i~~~s~SK~~-~~~G~RiG~~~---~~~~~~~~l~~~~~~~~~~~ 267 (385)
T 1b5p_A 203 DEIYEHLLYE-G-EHFSPGRV--------AP-EHTLTVNGAAKAF-AMTGWRIGYAC---GPKEVIKAMASVSRQSTTSP 267 (385)
T ss_dssp ECTTTTCBSS-S-CCCCGGGT--------CT-TTEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHTTTCSC
T ss_pred EccchhcccC-C-CCCCHHHc--------CC-CCEEEEEechhhc-CCcccceEEEE---eCHHHHHHHHHHHhhccCCC
Confidence 9999998873 3 34455433 33 5799999999999 89999999999 58899999988765 45788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..+|+. . .....+++++++.++++++.+.+.|+++ |+.+..|++++|+|++++.. +
T Consensus 268 ~~~~~~a~~~~l~~-----~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~------- 331 (385)
T 1b5p_A 268 DTIAQWATLEALTN-----Q--EASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-A------- 331 (385)
T ss_dssp CHHHHHHHHHHHHC-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTT-C-------
T ss_pred CHHHHHHHHHHHhC-----C--CcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCC-C-------
Confidence 99999998888741 0 0012346678899999999999999988 89988999999999766411 1
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.+..+++..++ ++||.+.||+.|+. .+++|||++.+++++++++++|+++++
T Consensus 332 ---~~~~~l~~~l~-~~gv~v~~g~~f~~---~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 332 ---PDEVRAAERLL-EAGVAVVPGTDFAA---FGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp ---SSHHHHHHHHH-HTTEECEESGGGTC---TTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred ---CCHHHHHHHHH-HCCeEEecccccCC---CCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 12455555554 88999999999975 348999999888999999999987764
No 4
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=4.5e-46 Score=373.90 Aligned_cols=364 Identities=19% Similarity=0.309 Sum_probs=293.1
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.++ ++..++++.++.+...+.++..+|+++|||+.|.|+. +. |+.+++++
T Consensus 4 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~------------------------~~-----~~~v~~a~ 53 (391)
T 3h14_A 4 KNS-SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGT------------------------GA-----PRGAVEAL 53 (391)
T ss_dssp CCC-STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CS-----CHHHHHHH
T ss_pred hhh-hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCCCC------------------------CC-----CHHHHHHH
Confidence 455 8889999999999999999999999999999999885 44 78899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.+ ....|++..|..++|+++++++++.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~~~~~~ 129 (391)
T 3h14_A 54 AKSLET---DALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-DSGDRVGIGAPGYPSYR 129 (391)
T ss_dssp HHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHhc---CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCCccHH
Confidence 888765 34689998899999999999999999999999999999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + ..++.+|+ +.|++. ++++|++++||||||.+++.+++++|+++|++||++||+
T Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 130 QILRALGLVPVDLPTAPENRLQPVP-ADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp HHHHHTTCEEEEEECCGGGTTSCCH-HHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCEEEEeecCcccCCCCCH-HHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 56665 2 23567899 988775 489999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|..+.++ +. ..++..+ .+++|+++|+||++ |++|+|+||++ +++++++.+.+... ..+++
T Consensus 200 De~~~~~~~~-~~-~~~~~~~----------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~ 263 (391)
T 3h14_A 200 DEIYHGIEYE-AK-AVTALEL----------TDECYVINSFSKYF-SMTGWRVGWMV---VPEDQVRVVERIAQNMFICA 263 (391)
T ss_dssp ECTTTTCBSS-SC-CCCGGGT----------CSSSEEEEESSSTT-CCTTSCCEEEE---CCGGGHHHHHHHHHHTTCCC
T ss_pred ECcchhcccC-CC-CcChhhc----------CCCEEEEEechhcc-CCccceeEEEE---eCHHHHHHHHHHHhhhccCC
Confidence 9999998874 32 2333221 23579999999999 89999999999 58899999988775 56788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++.+++.. ..++++.+++++++++.+.+.|++++...+..|++++++|++++.+.
T Consensus 264 ~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 324 (391)
T 3h14_A 264 PHASQVAALAALDC-----------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT-------- 324 (391)
T ss_dssp CHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC--------
T ss_pred CHHHHHHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC--------
Confidence 99999999888751 23455678889999999999999884344567889999996654211
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
.+..+++..+++++||.+.||+.|+...+.+++||+++.+++++++++++|++++++....+.
T Consensus 325 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~~~~~ 387 (391)
T 3h14_A 325 ---DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEGHH 387 (391)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC-----
T ss_pred ---CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhccccc
Confidence 135566667777789999999999874456799999998889999999999999987665443
No 5
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=1.9e-45 Score=368.78 Aligned_cols=365 Identities=24% Similarity=0.364 Sum_probs=301.8
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++.+++++.++.+...+.+...+|+++|||+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 53 (388)
T 1j32_A 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDF------------------------NT-----PKHIVEAAK 53 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 6788999999999999999888888889999999999874 33 788999988
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|.++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~ 129 (388)
T 1j32_A 54 AALEQ---GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVIIPAPFWVSYPE 129 (388)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHH
T ss_pred HHHhc---CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCChhHHH
Confidence 88765 34679988899999999999999888988889999999999999999999997 899999997
Q ss_pred ----cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ----FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ----~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ +. .++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+|
T Consensus 130 ~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (388)
T 1j32_A 130 MVKLAEGTPVILPTTVETQFKVSP-EQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202 (388)
T ss_dssp HHHHTTCEEEEECCCGGGTTCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHcCCEEEEecCCcccCCCCCH-HHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 56655 22 2577899 999999876 7999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|..+.+ ++.+..++..+.++. .++++++.|+||++ |++|+|+||++ +++++++.+..... .+++++
T Consensus 203 e~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~ 271 (388)
T 1j32_A 203 EIYEKILY-DDAQHLSIGAASPEA------YERSVVCSGFAKTY-AMTGWRVGFLA---GPVPLVKAATKIQGHSTSNVC 271 (388)
T ss_dssp CTTTTCBC-TTCCCCCGGGSCHHH------HHTEEEEEESTTTT-TCTTTCCEEEE---CCHHHHHHHHHHHHTTTCSCC
T ss_pred ccchhccc-CCCCCCCHHHccccc------cCCEEEEeechhcc-CCcccceEEEE---eCHHHHHHHHHHHhhcccCCC
Confidence 99999887 344444444331111 23689999999999 89999999999 58889999887765 567888
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+|+.. .++.++++++++++++++.+.|+++||+.+..+++++++|++++ ..
T Consensus 272 ~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~~-------- 331 (388)
T 1j32_A 272 TFAQYGAIAAYENS----------QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA--KT-------- 331 (388)
T ss_dssp HHHHHHHHHHHHSC----------SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCG--GG--------
T ss_pred HHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecC--CC--------
Confidence 99999888887521 12345578889999999999999988999888999999996543 10
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ .+..++...+++++||.+.||..|+. .+++||+++.+++++++++++|+++++++
T Consensus 332 ~-~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 332 G-RSSLDFCSELLDQHQVATVPGAAFGA---DDCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp T-CCHHHHHHHHHHHHCEECEEGGGGTC---TTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCEEEeChhhhCC---CCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 0 12455666666668999999998875 24899999988999999999999988764
No 6
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=1.5e-45 Score=376.85 Aligned_cols=372 Identities=17% Similarity=0.225 Sum_probs=294.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|.+..+++++.++++...+. .+++|||+.|.|+. . ...++.+.+++
T Consensus 53 ~~s~~~~~~~~s~~~~~~~~~~-----~~~~i~l~~g~p~~------------------------~---~~p~~~v~~a~ 100 (448)
T 3aow_A 53 FFSKKALEMRASEVRELLKLVE-----TSDIISLAGGLPNP------------------------K---TFPKEIIRDIL 100 (448)
T ss_dssp GCCHHHHHCCCCHHHHHHHHHH-----TSSSEECCCCCCCG------------------------G---GSCHHHHHHHH
T ss_pred HhhHHHhcCCCcHHHHHHHhcc-----CCCcEeCCCCCCCc------------------------h---hCCHHHHHHHH
Confidence 4788888899998888765432 45799999999884 0 01156777777
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+........+|++..|..+||+++++++.+.+|.+ ++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 101 ~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~-~~Gd~Vlv~~p~y~~~~ 178 (448)
T 3aow_A 101 VEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFL-NPGDIVVVEAPTYLAAL 178 (448)
T ss_dssp HHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHc-CCCCEEEEeCCChHHHH
Confidence 77776521124689998999999999999998888887 88999999999999999999997 999999997
Q ss_pred -----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ +.+..++|+ +.|++.++.....+.++++|+ +++|+||||.+++.+++++|+++|++||++||+||
T Consensus 179 ~~~~~~g~~~~~v~~~~~g~d~-~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De 257 (448)
T 3aow_A 179 QAFNFYEPQYIQIPLDDEGMKV-EILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDD 257 (448)
T ss_dssp HHHHTTCCEEEEEEEETTEECH-HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEeccCCCCCCH-HHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 56665 333346899 999999872111123689985 56999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.|+ +....++..+ +..+++|+++||||++ + +|+|+||++ +++++++.+..... ..++++.
T Consensus 258 ~y~~~~~~-g~~~~~~~~~--------~~~~~vi~~~S~SK~~-~-~GlriG~v~---~~~~l~~~l~~~~~~~~~~~~~ 323 (448)
T 3aow_A 258 PYGELRYS-GNPEKKIKAL--------DNEGRVIYLGTFSKIL-A-PGFRIGWMV---GDPGIIRKMEIAKQSTDLCTNV 323 (448)
T ss_dssp SCTTCBCS-SCCCCCTGGG--------CTTSCEEEEEESTTTT-C-GGGCCEEEE---ECHHHHHHHHHHHHHHHSSCCH
T ss_pred CCccccCC-CCCCcCHHhc--------CCCCCEEEEccchhhc-c-ccccEEEEE---eCHHHHHHHHHHHHHhcCCCCH
Confidence 99999883 4444455443 4445799999999999 7 999999999 48999999987765 4677899
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-CcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CR-NVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~p-g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.|.++..+|+. . .+..+.+++++.|+++++.+.+.|++ +| |+.+..|++++|+|++++ .+
T Consensus 324 ~~q~a~~~~L~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~--~~------- 386 (448)
T 3aow_A 324 FGQVVAWRYVDG-----G---YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLP--DG------- 386 (448)
T ss_dssp HHHHHHHHHHHT-----T---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECS--TT-------
T ss_pred HHHHHHHHHHHh-----C---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcC--CC-------
Confidence 999999998853 1 13445667889999999999999987 57 688888999999996653 22
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..+++..++ ++||.+.||..|+.. .+.+++||+++ .+++++++++++|++++++..
T Consensus 387 ---~~~~~l~~~l~-~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 387 ---IDSKKMLERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp ---CCHHHHHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHH-HCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12455555555 559999999998753 24569999999 578999999999999987654
No 7
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=2.5e-45 Score=368.86 Aligned_cols=362 Identities=15% Similarity=0.218 Sum_probs=297.0
Q ss_pred hhhhhhhccchhhhhHHHHHHHHH-HhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQ-KEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++.++..++++++..+.....++. .+|+++|||+.|+|++ +. |+.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~ 52 (396)
T 3jtx_A 2 MNTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKH------------------------PT-----PKVITDAL 52 (396)
T ss_dssp HHHHHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCS------------------------CC-----CHHHHHHH
T ss_pred hhhhhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCC------------------------CC-----CHHHHHHH
Confidence 467888899998888877665554 4578899999999886 43 88899998
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCC-cEEEcCCcHHHHHHHHHHHhcCCC-----CEEEEc-
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPE-LIFLTDGASKGVMQTLNCVIRGEG-----DGVVLL- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~~~~g-----d~Vlvp- 161 (463)
.+.+.. ...|++..|..++|+++++++.+++|++ ++++ +|++|+|+++++..++.+++ ++| |+|+++
T Consensus 53 ~~~~~~----~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~-~~g~~~~~d~vl~~~ 127 (396)
T 3jtx_A 53 TASLHE----LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL-NPVSDGIKPAIVSPN 127 (396)
T ss_dssp HHTGGG----GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC-CC---CCCCEEEEEE
T ss_pred HHHhhh----ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh-CCCCccCCCEEEEcC
Confidence 887753 4789999999999999999999999988 8899 99999999999999999997 886 799996
Q ss_pred ------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 ------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 ------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|.++ ..+++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|++|
T Consensus 128 p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~-~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~ 200 (396)
T 3jtx_A 128 PFYQIYEGATLLGGGEIHFANCPAPSFNPDW-RSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY 200 (396)
T ss_dssp SCCHHHHHHHHHTTCEEEEEECCTTTCCCCG-GGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCcHhHHHHHHHcCCEEEEeecCCCCCccCH-HHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 56665 345677899 999999987 899999999999999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
|++||+||+|..+.++ +..+.+.......++ .+.++++++.||||+| +++|+|+||++ +++++++.+.+...
T Consensus 201 ~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~ 272 (396)
T 3jtx_A 201 GFIIASDECYSEIYFD-GNKPLGCLQAAAQLG---RSRQKLLMFTSLSKRS-NVPGLRSGFVA---GDAELLKNFLLYRT 272 (396)
T ss_dssp CCEEEEECTTTTCCST-TCCCCCHHHHHHHTT---CCCTTEEEEEESTTTS-SCGGGCCEEEE---ECHHHHHHHHHHHH
T ss_pred CCEEEEEccccccccC-CCCCchHHhhhhhcc---cccCcEEEEecccccc-CCcccceEEEE---eCHHHHHHHHHHHh
Confidence 9999999999998883 323344433322220 1245789999999998 89999999998 59999999988765
Q ss_pred -hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 305 -IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 305 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
.+++++.+.|.++..+++. ..+.++.++.++++++.+.+.|++. +.+..+++++|+|++++ .
T Consensus 273 ~~~~~~~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~--~-- 335 (396)
T 3jtx_A 273 YHGSAMSIPVQRASIAAWDD-----------EQHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVP--D-- 335 (396)
T ss_dssp HHTCCCCHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECT--T--
T ss_pred hcccCCCHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEECC--C--
Confidence 5678899999999888752 2334567888999999999999875 45677889999996654 2
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC-----CCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ-----KEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~-----~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.++.+++..+++++||.+.||+.|+. ..+.+++||+++.+++++++++++|++++
T Consensus 336 ---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 336 ---------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp ---------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred ---------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 12566677777888999999999986 23467999999988899999999998764
No 8
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.5e-45 Score=370.12 Aligned_cols=368 Identities=20% Similarity=0.302 Sum_probs=284.4
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++.+++++.++.+...+.+...+|+++|||+.|.|+. +. |+.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~------------------------~~-----~~~v~~a~ 59 (412)
T 2x5d_A 9 RRFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDG------------------------PT-----PPHIVEKL 59 (412)
T ss_dssp ------------CHHHHHHHHHHHHHTTCCCEECSSCCCCS------------------------CC-----CHHHHHHH
T ss_pred chhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCC------------------------CC-----CHHHHHHH
Confidence 37888999999999988888877777899999999999874 32 78899988
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+... ..+.|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 60 ~~~~~~~--~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~-~~gd~Vl~~~p~~~~~ 136 (412)
T 2x5d_A 60 CTVAQRE--DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL-DHGDTILVPNPSYPIH 136 (412)
T ss_dssp HHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC-CTTCEEEEEESCCHHH
T ss_pred HHHHhCC--CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhH
Confidence 8877652 35679888899999999999998888988888 799999999999999999997 899999997
Q ss_pred ------cCcee---cCC---CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KRQ---QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~~---~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +.+ ++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|++||++||
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 209 (412)
T 2x5d_A 137 IYGAVIAGAQVRSVPLVPGIDFFNEL-ERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVV 209 (412)
T ss_dssp HHHHHHHTCEEEEEECSTTSCHHHHH-HHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHcCCEEEEeecCCccCCCCCH-HHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 45555 222 455788 999988875 78999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL 307 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~ 307 (463)
+||+|..+.++ +....++..+ +. .+++++++|+||++ |++|+|+||++ +++++++.+..... .++
T Consensus 210 ~De~~~~~~~~-g~~~~~~~~~--------~~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~ 276 (412)
T 2x5d_A 210 HDLAYADIVYD-GWKAPSIMQV--------PGAKDIAVEFFTLSKSY-NMAGWRIGFMV---GNPELVSALARIKSYHDY 276 (412)
T ss_dssp EECTTTTCBCT-TCCCCCGGGS--------TTGGGTEEEEEECC-CC-SCTTSCCEEEE---ECHHHHHHHHHHHHHHCC
T ss_pred EeccccccccC-CCCCCChhhc--------cCccCcEEEEecCcccc-CCcccceEEEE---cCHHHHHHHHHHHhhhcc
Confidence 99999998873 3333444432 21 34789999999999 89999999999 48999999987765 568
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHH
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+++.+.|.++..+|+.. .++.+++++.++++++++.+.|+++ |+.+..+++++|+|++++ .+.
T Consensus 277 ~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~~---- 339 (412)
T 2x5d_A 277 GTFTPLQVAAIAALEGD----------QQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAKIP--EPY---- 339 (412)
T ss_dssp CCCHHHHHHHHHHHHSC----------SHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEECC--TTT----
T ss_pred CCCHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEEcC--Ccc----
Confidence 88999999999888532 1234567888999999999999988 888888899999996553 210
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..+..+++..+++++||.+.||..|+.. +.+++||+++.+++++++++++|+++++++
T Consensus 340 ---~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 340 ---AHLGSLEFAKKLLQDAKVSVSPGIGFGDY-GDDHVRFALIENRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp ---GGGCHHHHHHHHHHHHCEECEEGGGGCGG-GTTEEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHCCEEEeCchhhCCC-CCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 00024566666667789999999998642 456899999988899999999999998764
No 9
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=7.6e-45 Score=365.89 Aligned_cols=363 Identities=10% Similarity=0.080 Sum_probs=275.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++..++...+++++..+...+++.. ..++|||+.|.|.. |.. +.+. ++.+.+++
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~I~l~~G~~~d------------------~~~-~~~~-----~~~v~~a~ 56 (405)
T 3k7y_A 3 KLLSSLENIEVDNILKTAREFKEDT--CEEKINLSIGVCCN------------------DDG-DLHI-----FDSVLNAD 56 (405)
T ss_dssp CGGGGCCCCCCCHHHHHHHHHTTSS--CSSCEECSCSSCBC------------------TTS-SBCC-----CHHHHHHH
T ss_pred chhhcCCCCCCChHHHHHHHHhcCC--CcCcEEeeeeeeEC------------------CCC-CCcc-----cHHHHHHH
Confidence 4678888999998887776554332 35689999997421 000 0122 67777776
Q ss_pred HHHh-hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--EEEcCCcHHHHHHHHHHHhcC--CCCEEEEc---
Q 041151 90 KHYL-SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL--IFLTDGASKGVMQTLNCVIRG--EGDGVVLL--- 161 (463)
Q Consensus 90 ~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~~~--~gd~Vlvp--- 161 (463)
. .+ .. ...++|++..|.++||+++++|+.++++..+++++ |++|+|+++++.+++.+++ + | |+|+++
T Consensus 57 ~-~~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~-~~~~-d~Vlv~~P~ 131 (405)
T 3k7y_A 57 K-LVTEN--YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK-MLNV-ETLYVTNPP 131 (405)
T ss_dssp H-HHHHH--CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH-TTTC-CEEEEESSC
T ss_pred H-HhcCC--CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH-hcCC-CEEEEeCCC
Confidence 6 43 22 25679999999999999999999777676677774 5999999999999999997 7 8 999997
Q ss_pred ----------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECC-CCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 ----------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINP-GNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 ----------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p-~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|+++ + .+++++|+ +.|++.+++. +++++|++++| |||||.++|.+++++|+++|++|
T Consensus 132 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~ 206 (405)
T 3k7y_A 132 YINHVNMIESRGFNLKYINFFDYNLIDINY-DLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK 206 (405)
T ss_dssp CHHHHHHHHTTTCEEEEECCEETTTTEECH-HHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHcCCeEEEEeccccccCCcCH-HHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 77776 2 33689999 9999999852 14678888755 99999999999999999999999
Q ss_pred CeEEEecccccccccCCCC-CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh--
Q 041151 225 NLVLLGDEVYQQNIYQDER-PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK-- 301 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~-- 301 (463)
+++||+||+|.++.+++.. ...++..+. ....++|+++||||+| +++|||+||++++.+++++++.+.+
T Consensus 207 ~~~vi~De~Y~~l~~~~~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l 278 (405)
T 3k7y_A 207 KHVIIFDIAYQGFGHTNLEEDVLLIRKFE-------EKNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNL 278 (405)
T ss_dssp CCEEEEEESCTTTSSSSTTGGGHHHHHHH-------TTTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEEecCcccccCCCcccchHHHHHHH-------hcCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999998873211 122333332 2234899999999999 9999999998643357777666542
Q ss_pred --hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCC---CcccccCCcee
Q 041151 302 --IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN----SCR---NVVCNFTEGAM 371 (463)
Q Consensus 302 --~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~p---g~~~~~~~g~~ 371 (463)
... ...+++.+.|.++..++++. .....+.++++.++++|+++|+.+.+.|+ ++. ++.+..|+|||
T Consensus 279 ~~~~~~~~~~~~~~~q~~~~~~l~~~----~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~ 354 (405)
T 3k7y_A 279 CFIVRKFYSSPVIHTNRILCQLLNNQ----NLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGL 354 (405)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSS
T ss_pred HHHHhcccCCCcHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceE
Confidence 222 23456789999998888531 11234566677889999999999999999 762 27888999999
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
|+|++++ . +++..+ +++||.+.||. |||++ .++++++.++++|++++++
T Consensus 355 f~~~~l~--~---------------~~~~~L-~~~gV~v~p~~-----------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 355 FSFVPLL--A---------------KIAEHL-KTHHIYIINNG-----------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp EEECGGG--G---------------GGTTTT-TTTTEECCTTS-----------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred EEecCCC--H---------------HHHHHH-HHCCEeecCCC-----------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 9995543 1 234455 89999999942 99998 7889999999999998763
No 10
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=1.1e-45 Score=375.81 Aligned_cols=373 Identities=18% Similarity=0.270 Sum_probs=288.0
Q ss_pred hhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHh
Q 041151 14 NVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYL 93 (463)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~ 93 (463)
.+...+.++|+.+...+......++++|+|+.|.|+.+|. .+. ++.+.+++.+.+
T Consensus 30 ~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~--------------------~~~-----~~~v~~a~~~~~ 84 (427)
T 3dyd_A 30 DMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGN--------------------LPT-----DPEVTQAMKDAL 84 (427)
T ss_dssp C----------------CCCCCTTSCCEECCCSCTTTTSS--------------------SCC-----CHHHHHHHHHHH
T ss_pred hHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCCCccCC--------------------CCC-----CHHHHHHHHHHH
Confidence 3445556678877776665555678899999999874221 122 889999998888
Q ss_pred hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------
Q 041151 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------ 161 (463)
Q Consensus 94 ~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------ 161 (463)
... ....|++..|..++|+++++++.+. +.++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 85 ~~~--~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~ 160 (427)
T 3dyd_A 85 DSG--KYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLA-NPGQNILVPRPGFSLYKTLAE 160 (427)
T ss_dssp HHC--CSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHH
T ss_pred hcC--cCCCCCCCCCcHHHHHHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHH
Confidence 762 4568999999999999999999765 777889999999999999999999997 899999997
Q ss_pred -cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccc
Q 041151 162 -FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234 (463)
Q Consensus 162 -~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay 234 (463)
.|.++ +..++.+|+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|
T Consensus 161 ~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay 233 (427)
T 3dyd_A 161 SMGIEVKLYNLLPEKSWEIDL-KQLEYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIY 233 (427)
T ss_dssp HTTCEEEEEEEEGGGTTEECH-HHHHSSCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HcCCEEEEEecccccCCCCCH-HHHHHHhcc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 56655 335678999 999999876 7999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC----hhHHHHHHhhhhhcccCC
Q 041151 235 QQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP----PKTVDEIYKIASIALSPN 310 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~----~~~~~~l~~~~~~~~~~~ 310 (463)
..+.++ +....++..+ +.+.++|+++||||.| +++|+|+||+++.+.. +++++.+.......++++
T Consensus 234 ~~~~~~-g~~~~~~~~~--------~~~~~vi~~~S~sK~~-~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 303 (427)
T 3dyd_A 234 GDMVFS-DCKYEPLATL--------STDVPILSCGGLAKRW-LVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPC 303 (427)
T ss_dssp TTCBCS-SCCCCCGGGG--------CSSCCEEEEEESTTTS-SCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSC
T ss_pred hhhccC-CCcCccHHHh--------CCCCcEEEEeeccccC-CCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCC
Confidence 998883 4444455443 4445789999999998 8999999999962110 467777776654467889
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++.++|+... ..+.++++++++++++.+.+.|+++||+.+..|++++|+|+.++...- .
T Consensus 304 ~~~~~a~~~~L~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~-------~ 367 (427)
T 3dyd_A 304 TIVQGALKSILCRTP---------GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHF-------P 367 (427)
T ss_dssp HHHHHHHHHHHHHSC---------HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGC-------T
T ss_pred HHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhc-------C
Confidence 999999999885211 233556788899999999999999999998889999999976642100 0
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
...++.+++..+++++||.+.||..|+. .+++||+++.+++++++++++|++++++++
T Consensus 368 ~~~~~~~~~~~l~~~~gV~v~~g~~~~~---~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 368 EFENDVEFTERLVAEQSVHCLPATCFEY---PNFIRVVITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp TCSSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHCCEEEECCcccCC---CCeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 0123567777777889999999998875 248999999888999999999999987654
No 11
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=7.9e-45 Score=365.55 Aligned_cols=356 Identities=17% Similarity=0.281 Sum_probs=289.5
Q ss_pred hhhhhhhhc--cchhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH
Q 041151 10 SMNENVKKV--QYAVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA 85 (463)
Q Consensus 10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 85 (463)
++++++.++ .++.++++...+.++... ++++|||+.|+|+. +. |+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~v 53 (398)
T 3ele_A 3 VVNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSI------------------------PA-----PQIV 53 (398)
T ss_dssp SSCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCCS------------------------CC-----CHHH
T ss_pred chhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCCC------------------------CC-----CHHH
Confidence 478899888 689999998888877765 46799999998885 33 8899
Q ss_pred HHHHHHHhhhcCCC-CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEEc--
Q 041151 86 IARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVLL-- 161 (463)
Q Consensus 86 ~~a~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlvp-- 161 (463)
.+++.+.+...... ...|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++| |+|+++
T Consensus 54 ~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~-~~g~d~vl~~~p 132 (398)
T 3ele_A 54 NDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT-SDAYDEFITIAP 132 (398)
T ss_dssp HHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CSTTCEEEEESS
T ss_pred HHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc-CCCCCEEEEeCC
Confidence 99998888762111 5789988999999999999999999999999999999999999999999997 899 999997
Q ss_pred -----------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh--
Q 041151 162 -----------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-- 223 (463)
Q Consensus 162 -----------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-- 223 (463)
.|.++ + .+++++|+ ++|++++++ ++++|++++||||||.+++.+++++|+++|++
T Consensus 133 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 205 (398)
T 3ele_A 133 YFPEYKVFVNAAGARLVEVPADTEHFQIDF-DALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKS 205 (398)
T ss_dssp CCTHHHHHHHHTTCEEEEECCCTTTSSCCH-HHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHcCCEEEEEecCCcCCcCCH-HHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhh
Confidence 56665 2 33678999 999999876 79999999999999999999999999999999
Q ss_pred ----CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh-----
Q 041151 224 ----ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----- 294 (463)
Q Consensus 224 ----~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----- 294 (463)
+|++||+||+|..+.++ +....... ...+++++++|+||++ |++|+|+||+++ +++
T Consensus 206 ~~~~~~~~li~De~~~~~~~~-~~~~~~~~----------~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~ 270 (398)
T 3ele_A 206 KEIGRPIFIIADEPYREIVYD-GIKVPFVT----------KYYDNTLVCYSYSKSL-SLPGERIGYVLV---PDEVYDKA 270 (398)
T ss_dssp HHHTSCCEEEEECTTTTCBCT-TCCCCCGG----------GTCSSEEEEEESTTTS-SCTTTCCEEEEC---CTTSTTHH
T ss_pred hccCCCeEEEEeccccccccC-CCCcCChH----------hhcCCeEEEEehhhcC-CCccceeEEEEE---cchhhhHH
Confidence 99999999999998883 33333322 2234789999999999 899999999994 665
Q ss_pred -HHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCcee
Q 041151 295 -TVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAM 371 (463)
Q Consensus 295 -~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~ 371 (463)
+.+.+..... ...+++.+.|.++..+++... .++.++++++++.+.|+++ |+.+..+++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------------~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 334 (398)
T 3ele_A 271 ELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG---------------DINAYKENRDLLYEGLTRI-GYHCFKPDGAF 334 (398)
T ss_dssp HHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC---------------CHHHHHHHHHHHHHHHHHH-TCCEECCSBSS
T ss_pred HHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH---------------HHHHHHHHHHHHHHHHHHc-CCeecCCCeeE
Confidence 3334443332 245677889998888876321 2456788888999999888 88889999999
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|+|++++ .. +..++. +.|.++||.+.||+.|+.+ +++||+++.+++++++++++|+++++++
T Consensus 335 ~~~~~~~--~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~~---~~iRis~~~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 335 YMFVKAL--ED-----------DSNAFC-EKAKEEDVLIVAADGFGCP---GWVRISYCVDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp EEEEECS--SS-----------CHHHHH-HHHHTTTEECEESGGGTCT---TEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcC--CC-----------CHHHHH-HHHHHCCEEEeCccccCCC---CeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 9996553 21 234444 4678899999999999752 4899999988999999999999998765
No 12
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.5e-45 Score=373.75 Aligned_cols=381 Identities=18% Similarity=0.248 Sum_probs=302.0
Q ss_pred ChhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 7 DYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
++..+++++..++++.++++...+ .+.++|+|+.|+|++ +. |+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~------------------------~~-----~~~v~ 47 (422)
T 3fvs_A 2 AKQLQARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDF------------------------PP-----PDFAV 47 (422)
T ss_dssp --CCSCGGGTTCCCCHHHHHHHHH-----HTSCCEECCCSSCSS------------------------CC-----CHHHH
T ss_pred cchhHHHHhhccCccHHHHHHHHh-----hcCCceEeCCCCCCC------------------------CC-----CHHHH
Confidence 455688999999999888876543 345799999999985 44 88999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---- 161 (463)
+++.+.+.... ...+|++..|..++|+++++++++.+|+++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 48 ~a~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~ 125 (422)
T 3fvs_A 48 EAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIIIEPFF 125 (422)
T ss_dssp HHHHHHHHSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCC
T ss_pred HHHHHHHhCCC-ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc-CCCCEEEEcCCCc
Confidence 99988887521 24789998899999999999999999999988 699999999999999999997 899999996
Q ss_pred ---------cCcee---c--C-----------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 162 ---------FHTTW---K--R-----------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 162 ---------~g~~~---~--~-----------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
.|.++ + . .++.+|+ +.|++++++ ++++|++++||||||.+++.+++++
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~ 198 (422)
T 3fvs_A 126 DCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDP-MELAGKFTS------RTKALVLNTPNNPLGKVFSREELEL 198 (422)
T ss_dssp TTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred hhhHHHHHHcCCEEEEEecccccccccccccccCCCCCH-HHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHH
Confidence 45554 1 1 2456899 999998876 7999999999999999999999999
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|+++|++||++||+||+|+.+.++ +..+.++..+. ...+++|+++|+||.| |++|+|+||++ ++++++
T Consensus 199 i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~-------~~~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~ 266 (422)
T 3fvs_A 199 VASLCQQHDVVCITDEVYQWMVYD-GHQHISIASLP-------GMWERTLTIGSAGKTF-SATGWKVGWVL---GPDHIM 266 (422)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCT-TCCCCCGGGST-------TTGGGEEEEEEHHHHH-TCGGGCCEEEE---CCHHHH
T ss_pred HHHHHHHcCcEEEEEccchhhccC-CCCCCChhhcc-------cccCcEEEEecchhcc-CCccceEEEEE---eCHHHH
Confidence 999999999999999999998883 44444554431 2235789999999999 89999999999 689999
Q ss_pred HHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 297 DEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 297 ~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
+.+.+... ..++++.+.|.++..+++... ..+.....+.+++++.++++++.+.+.|+++ |+.+..|++++|+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 342 (422)
T 3fvs_A 267 KHLRTVHQNSVFHCPTQSQAAVAESFEREQ---LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLIT 342 (422)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHH---HTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEE
T ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHhhcc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEE
Confidence 99987765 567889999999988874200 0000012335567888999999999999998 899889999999997
Q ss_pred eccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCCCCCCC----CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGSGFGQK----EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~~f~~~----~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
++..... . .+.....+ +.+++..+++++||.+.||+.|+.. .+.+++|||++.+++++++++++|++++
T Consensus 343 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 343 DISDFKR--K-MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419 (422)
T ss_dssp ECHHHHH--H-CCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred echhhcc--c-ccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 6641100 0 00000000 3467777888899999999999742 3567999999999999999999999987
Q ss_pred HH
Q 041151 448 DE 449 (463)
Q Consensus 448 ~~ 449 (463)
++
T Consensus 420 ~~ 421 (422)
T 3fvs_A 420 VE 421 (422)
T ss_dssp HC
T ss_pred hh
Confidence 54
No 13
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=1.6e-44 Score=366.93 Aligned_cols=383 Identities=14% Similarity=0.201 Sum_probs=289.2
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|+++..++++.++++...+.+. ++++|+|+.|.|+. ...|.+..... +..+ +.+ ...
T Consensus 6 ~~s~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~G~p~~-~~~p~~~~~~~---------~~~~-------~~~-~~~ 64 (425)
T 2r2n_A 6 FITAASAARNPSPIRTMTDILSRG---PKSMISLAGGLPNP-NMFPFKTAVIT---------VENG-------KTI-QFG 64 (425)
T ss_dssp GSCHHHHTCCCCSGGGHHHHHHHS---CTTCEECCCCCCCG-GGCSEEEEEEE---------ETTS-------CCE-EEC
T ss_pred HHHHHHhcCCCchHHHHHHHhhcC---CCCeEEcCCcCCCc-hhCCHHHHHHH---------Hhhc-------ccc-ccc
Confidence 589999999999999988765532 35799999999984 00010000000 0000 000 000
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCC-------CCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD-------PELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp- 161 (463)
..... ...+|++..|+++||++|++++.+.+|++.+ +++|++|+|+++++..++.+++ +|||+|+++
T Consensus 65 ~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~ 139 (425)
T 2r2n_A 65 EEMMK----RALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPGDNVLLDE 139 (425)
T ss_dssp HHHHH----HHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-CTTCEEEEES
T ss_pred ccchh----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-CCCCEEEEeC
Confidence 00111 1257999999999999999999988898764 3799999999999999999997 899999997
Q ss_pred ------------cCcee---cCCCcccChHHHHHHHHHHHH------hcCCceeEEEE-ECCCCCCccCCCHHHHHHHHH
Q 041151 162 ------------FHTTW---KRQQIGVLIINDLQQSVAQAR------SKGITVRAMVI-INPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 162 ------------~g~~~---~~~~~~~d~~~~l~~~l~~~~------~~~~~~~~i~l-~~p~NPtG~~~s~~~l~~l~~ 219 (463)
.|.++ +.+..++|+ +.|++.++... ..+.++++|++ ++||||||.+++.+++++|++
T Consensus 140 p~y~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 218 (425)
T 2r2n_A 140 PAYSGTLQSLHPLGCNIINVASDESGIVP-DSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE 218 (425)
T ss_dssp SCCHHHHHHHGGGTCEEEEECEETTEECH-HHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCEEEEeCcCCCCCCH-HHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence 56665 333456899 99999987210 00126888877 499999999999999999999
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|++||++||+||+|+++.|+ +.+..++..+ +..+++|+++||||++ + +|+|+||++ +++++++.+
T Consensus 219 ~a~~~~~~li~De~~~~~~~~-g~~~~~~~~~--------~~~~~~i~~~s~SK~~-~-~GlRiG~~~---~~~~l~~~l 284 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFN-KFRVPTFLSM--------DVDGRVIRADSFSKII-S-SGLRIGFLT---GPKPLIERV 284 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSS-SSCCCCTGGG--------CTTSCEEEEEESTTTT-C-STTCCEEEE---EEHHHHHHH
T ss_pred HHHHcCCEEEEECCcccccCC-CCCCCCcccc--------CCCCCEEEEccchhhc-c-CccceEEEe---cCHHHHHHH
Confidence 999999999999999998883 4444555443 4445899999999999 7 999999999 488899999
Q ss_pred Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCc-ccccCCceeEEeee
Q 041151 300 YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CRNV-VCNFTEGAMYSFPQ 376 (463)
Q Consensus 300 ~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~-~~~~~~g~~~~~~~ 376 (463)
..... ..++++.+.|.++..+|+.. .-..+.++.+++++.|+++++.+.+.|++ +||+ .+..|++++|+|++
T Consensus 285 ~~~~~~~~~~~~~~~q~a~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~ 359 (425)
T 2r2n_A 285 ILHIQVSTLHPSTFNQLMISQLLHEW-----GEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK 359 (425)
T ss_dssp HHHHHTTTCSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEE
Confidence 88765 56788999999999887410 00123455677899999999999999987 6776 56778999999976
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK--EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
++ .. .++.+++...|.++||.+.||+.|+.. .+.+++||+++ .+++++++++++|++++++.
T Consensus 360 ~~--~~----------~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 360 VK--GI----------NDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp ET--TC----------SCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eC--CC----------CCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 64 21 124454566778899999999999863 13468999998 89999999999999988653
No 14
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-45 Score=374.25 Aligned_cols=367 Identities=17% Similarity=0.260 Sum_probs=290.6
Q ss_pred ccchhhhhHHHHHHHH----HHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHh
Q 041151 18 VQYAVRGELYLRASEL----QKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYL 93 (463)
Q Consensus 18 ~~~~~~~~~~~~~~~~----~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~ 93 (463)
++++.++.+...++++ +..++++|||+.|.|+. +. |+.+.+++.+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~------------------------~~-----~~~v~~a~~~~~ 83 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSY------------------------SP-----PQFAIKEAQKAL 83 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSS------------------------CC-----CHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCC------------------------CC-----CHHHHHHHHHHH
Confidence 7788888887776655 33567899999999985 33 889999998887
Q ss_pred hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------
Q 041151 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------ 161 (463)
Q Consensus 94 ~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------ 161 (463)
... ...+|++..|.++||+++++++.+.+|..+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 84 ~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~ 160 (447)
T 3b46_A 84 DIP--MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL-NAGDEVIVFEPFFDQYIPNIE 160 (447)
T ss_dssp TSG--GGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHH
T ss_pred hCc--CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhHHHHHH
Confidence 652 35689998999999999999998888888889999999999999999999997 899999997
Q ss_pred -cCcee---c--CC-----------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -FHTTW---K--RQ-----------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -~g~~~---~--~~-----------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|+++ + .. ++.+|+ +.|++++++ ++++|++++||||||.++|.+++++|+++|++|
T Consensus 161 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~ 233 (447)
T 3b46_A 161 LCGGKVVYVPINPPKELDQRNTRGEEWTIDF-EQFEKAITS------KTKAVIINTPHNPIGKVFTREELTTLGNICVKH 233 (447)
T ss_dssp HTTCEEEEEEEECCGGGGTSCBCSTTSEECH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred HcCCEEEEEeCCCccccccccccccCcccCH-HHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc
Confidence 46555 1 22 578999 999998875 799999999999999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC-ChhHHHHHHhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI-PPKTVDEIYKIA 303 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~-~~~~~~~l~~~~ 303 (463)
|++||+||+|..+.|+ + +..++..+.++. .+++++++|+||+| +++|+|+||++ + ++++++.+....
T Consensus 234 ~~~li~De~~~~~~~~-g-~~~~~~~~~~~~------~~~~i~i~S~sK~~-~~~G~riG~~~---~~~~~l~~~l~~~~ 301 (447)
T 3b46_A 234 NVVIISDEVYEHLYFT-D-SFTRIATLSPEI------GQLTLTVGSAGKSF-AATGWRIGWVL---SLNAELLSYAAKAH 301 (447)
T ss_dssp TCEEEEECTTTTCBCS-S-CCCCGGGSCHHH------HTTEEEEEEHHHHT-TCTTSCCEEEE---CSCHHHHHHHHHHH
T ss_pred CcEEEEeccchhcccC-C-CCcCHHHcCCCC------CCcEEEEecCchhc-CCcchhhEEEE---eCCHHHHHHHHHHH
Confidence 9999999999998884 3 333443321111 23689999999999 89999999999 7 899999998776
Q ss_pred h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCC--
Q 041151 304 S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLP-- 380 (463)
Q Consensus 304 ~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~-- 380 (463)
. ..++++.+.|.++..+|+. . ....+.+++++.++++++++.+.|+++ |+.+..|++++|+|+++...
T Consensus 302 ~~~~~~~~~~~~~a~~~aL~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~ 372 (447)
T 3b46_A 302 TRICFASPSPLQEACANSIND-----A---LKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKI 372 (447)
T ss_dssp HHHTSSCCHHHHHHHHHHHHH-----H---HHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCC
T ss_pred hhccCCCChHHHHHHHHHHhC-----C---cchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccC
Confidence 4 5678899999998888741 0 113345678899999999999999988 88888899999999776421
Q ss_pred -hhhHHHHhhcC-CCChHHHHHHHHHhcCeEeeCCCCCCCCC----CCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 381 -PKAIEAAKRAG-KVPDVFYCLRLLEATGISTVPGSGFGQKE----GIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 381 -~~~~~~~~~~~-~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+.. .....+ ..++.+++..+++++||.+.||+.|+..+ +.+++|||++.+++++++++++|++
T Consensus 373 p~~~~-~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 373 PEDYP-YPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKL 442 (447)
T ss_dssp CTTCC-CCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGG
T ss_pred ccccc-cccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 0000 000000 01245666667778999999999997531 2569999999888999999999976
No 15
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=2.1e-44 Score=361.34 Aligned_cols=361 Identities=23% Similarity=0.401 Sum_probs=294.6
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+|.++..++++.++.+...+.+. +++|+|+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 49 (389)
T 1gd9_A 3 LSDRLELVSASEIRKLFDIAAGM----KDVISLGIGEPDF------------------------DT-----PQHIKEYAK 49 (389)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHTC----SSCEECCCCSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhHhHhCChhHHHHHHHHHhhh----cCeEecCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 68889999999888887765432 5789999999874 32 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCc-EEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|+++++++ |++|+|+++++..++.+++ ++||+|+++
T Consensus 50 ~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~ 125 (389)
T 1gd9_A 50 EALDK---GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIPTPAFVSYA 125 (389)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEEEEESCCTTHH
T ss_pred HHHhC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHH
Confidence 88865 3457988889999999999999988898888999 9999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + ++++.+|+ +.|++.+++ ++++|++++||||||.++|.+++++|+++|++||++||+
T Consensus 126 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 126 PAVILAGGKPVEVPTYEEDEFRLNV-DELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp HHHHHHTCEEEEEECCGGGTTCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCEEEEeccCCccCCCCCH-HHHHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45555 2 23577899 999999876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
||+|..+.++ +.+..++..+ +. .+++++++|+||++ |++|+|+||++ +++++++.+..... ..++
T Consensus 199 De~~~~~~~~-~~~~~~~~~~--------~~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~ 265 (389)
T 1gd9_A 199 DEVYEHFIYD-DARHYSIASL--------DGMFERTITVNGFSKTF-AMTGWRLGFVA---APSWIIERMVKFQMYNATC 265 (389)
T ss_dssp ECTTTTCBCT-TCCCCCGGGS--------TTCGGGEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHTTTTCS
T ss_pred ehhhhhcccC-CCCCCCHhhc--------cCCCCCEEEEecChhhc-CCcccceEEEE---ECHHHHHHHHHHHhhhccC
Confidence 9999998873 3323344332 21 34789999999999 89999999999 58899999987765 5678
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..+|+.. .. .++.++++++++++++.+.+.|+++ |+.+..+++++++|++++ ..
T Consensus 266 ~~~~~~~a~~~~l~~~-------~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~------ 328 (389)
T 1gd9_A 266 PVTFIQYAAAKALKDE-------RS-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR--DT------ 328 (389)
T ss_dssp CCHHHHHHHHHHHTCH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCG--GG------
T ss_pred CCHHHHHHHHHHHhCC-------Cc-chHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEecc--CC------
Confidence 8999999999888621 11 1245678889999999999999998 888888999999996543 20
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+ .+..++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|++++++
T Consensus 329 --~-~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 329 --G-LTSKKFSELMLKEARVAVVPGSAFGK-AGEGYVRISYATAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp --T-CCHHHHHHHHHHHTCEECEEGGGGCG-GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred --C-CCHHHHHHHHHHhCCEEEeCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 0 12455555555589999999998874 245689999998889999999999988765
No 16
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=3.1e-44 Score=362.53 Aligned_cols=370 Identities=26% Similarity=0.439 Sum_probs=294.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
..++++.+++++.++.+. .+.++.++|+++|+|+.|.|... +.+. |+.+.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~l~~~~~~~~---------------------~~~~-----~~~v~~a~ 63 (406)
T 1xi9_A 11 RASKRALSVEYAIRDVVL-PARELEKKGIKVIRLNIGDPVKF---------------------DFQP-----PEHMKEAY 63 (406)
T ss_dssp CCCHHHHTCCC--------CHHHHHHTTCCCEECCCCCGGGT---------------------TCCC-----CHHHHHHH
T ss_pred hHHHHHhcCChhHHHHHH-HHHHHHHcCCCEEEecCCCCCcC---------------------CCCC-----CHHHHHHH
Confidence 567889999999999999 88888888999999999998310 0133 78899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.. ....|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 64 ~~~~~~---~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~Vl~~~~~~~~~~ 139 (406)
T 1xi9_A 64 CKAIKE---GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVPGPSYPPYT 139 (406)
T ss_dssp HHHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHhc---CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCccHH
Confidence 888765 23579888899999999999999989988999999999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + .+++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|+++|++||+
T Consensus 140 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 212 (406)
T 1xi9_A 140 GLVKFYGGKPVEYRTIEEEDWQPDI-DDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVIS 212 (406)
T ss_dssp HHHHHTTCEEEEEEEEGGGTSEECH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHcCCEEEEeecCCCcCCcCCH-HHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 56655 2 14577899 999999876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCce-EEEEecCCcccCCCCCceeEEEEecCCCh----hHHHHHHhhhhh
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQ-LVSFHTVSKGYWGECGQRGGYFEMTNIPP----KTVDEIYKIASI 305 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~g~~G~R~G~~~~~~~~~----~~~~~l~~~~~~ 305 (463)
||+|..+.+ ++ ...++..+ + .++ +|+++|+||++ |++|+|+||+++. +++ ++++.+......
T Consensus 213 De~~~~~~~-~~-~~~~~~~~--------~-~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~~~l~~~l~~~~~~ 279 (406)
T 1xi9_A 213 DEIYDLMTY-EG-EHISPGSL--------T-KDVPVIVMNGLSKVY-FATGWRLGYMYFV-DPENKLSEVREAIDRLARI 279 (406)
T ss_dssp ECTTTTCBS-SS-CCCCHHHH--------C-SSSCEEEEEESTTTT-CCGGGCCEEEEEE-CTTCTTHHHHHHHHHHHHH
T ss_pred EcCcccccc-CC-CCCCHHHc--------C-CCceEEEEecccccc-CCCccEEEEEEEe-cCchhHHHHHHHHHHHHHh
Confidence 999999877 32 23455544 3 346 89999999999 8999999999821 166 888888877652
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHH
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIE 385 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~ 385 (463)
.++++.+.|.++.++|+... .+.+++++.++++++++.+.|+++||+.+..+++++++|++++...+
T Consensus 280 ~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--- 346 (406)
T 1xi9_A 280 RLCPNTPAQFAAIAGLTGPM----------DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW--- 346 (406)
T ss_dssp TCCSCSHHHHHHHHHHHSCC----------HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC---
T ss_pred hcCCCHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCC---
Confidence 27888999999988884211 12456788899999999999999889988888999999966541001
Q ss_pred HHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 386 AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 386 ~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|+++++++.
T Consensus 347 -------~~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 347 -------KNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFLPPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp -------SSHHHHHHHHHHHHCEECEEGGGGCG-GGTTBEEEECCSCHHHHHHHHHHHHHHHHHC-
T ss_pred -------CCHHHHHHHHHHhCCEEEeCchhcCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 12455555666689999999999875 24468999999888999999999999987653
No 17
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=5.1e-44 Score=358.94 Aligned_cols=355 Identities=25% Similarity=0.397 Sum_probs=297.0
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
-++++++...+++.++.+...+.+..++|+++|+|+.|.|+. +. |+.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a 62 (389)
T 1o4s_A 12 HMVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDF------------------------PT-----PEPVVEE 62 (389)
T ss_dssp --CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CC-----CHHHHHH
T ss_pred HHHHHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCCCC------------------------CC-----CHHHHHH
Confidence 467889999999999999999988888888999999998874 33 7889999
Q ss_pred HHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 89 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
+.+.+.. ....|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 63 ~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~-~~gd~Vl~~~~~~~~~ 138 (389)
T 1o4s_A 63 AVRFLQK---GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFSPVWVSY 138 (389)
T ss_dssp HHHHHTT---CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTH
T ss_pred HHHHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC-CCCCEEEEcCCCchhH
Confidence 8888765 23579888899999999999998888988889999999999999999999997 899999997
Q ss_pred ------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +. +++.+|+ +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++||
T Consensus 139 ~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 211 (389)
T 1o4s_A 139 IPQIILAGGTVNVVETFMSKNFQPSL-EEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYII 211 (389)
T ss_dssp HHHHHHTTCEEEEEECCGGGTTCCCH-HHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHcCCEEEEEecCCccCCCCCH-HHHHHhccc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 55555 22 3578899 999998876 79999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL 307 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~ 307 (463)
+||+|..+.++ + ...++..+ +. .+++++++|+||++ |++|+|+||++ +++++++.+..... ..+
T Consensus 212 ~Dea~~~~~~~-g-~~~~~~~~--------~~~~~~~i~~~s~sK~~-~~~G~r~G~l~---~~~~~~~~l~~~~~~~~~ 277 (389)
T 1o4s_A 212 SDEVYDSLVYT-D-EFTSILDV--------SEGFDRIVYINGFSKSH-SMTGWRVGYLI---SSEKVATAVSKIQSHTTS 277 (389)
T ss_dssp EECTTTTSBCS-S-CCCCHHHH--------CSSSTTEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTC
T ss_pred EEccccccccC-C-CCCCHhhc--------CCCCCcEEEEeechhhc-CCcccceEEEE---eCHHHHHHHHHHhhhccc
Confidence 99999998773 3 33455554 21 34689999999999 89999999999 58899999887765 467
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHH
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+++.+.|.++..+|+.. .++++++++++++++.+.|+++ |+.+..+++++++|++++ .
T Consensus 278 ~~~~~~~~a~~~~l~~~-------------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~------ 335 (389)
T 1o4s_A 278 CINTVAQYAALKALEVD-------------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR--G------ 335 (389)
T ss_dssp SCCHHHHHHHHHHTTCC-------------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS--S------
T ss_pred CCCHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC--C------
Confidence 88999999998888631 2346777899999999999988 888888899999996553 1
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+..++...+++++||.+.||..|+. + +++||+++.+++++++++++|+++++
T Consensus 336 ------~~~~l~~~l~~~~gi~v~~g~~f~~-~--~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 336 ------DDVKFCERLLEEKKVALVPGSAFLK-P--GFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp ------CHHHHHHHHHHHHCEECEEGGGGTC-T--TEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHCCEEEeCchhcCC-C--CeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 2455555655688999999998875 2 38999999888999999999988764
No 18
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=1.1e-43 Score=353.94 Aligned_cols=353 Identities=23% Similarity=0.383 Sum_probs=291.8
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.++.+...+.+.+.+|+++|+|+.|.|+. +. |+.+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 52 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDF------------------------NT-----PKPIVDEGI 52 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCCCC------------------------CC-----CHHHHHHHH
Confidence 6788889999999999998888888888999999999874 32 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ....|++..|..++|+++++++++.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 53 ~~~~~---~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~ 128 (370)
T 2z61_A 53 KSLKE---GKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLIQNPCYPCYKN 128 (370)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHH
T ss_pred HHHHc---CccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHH
Confidence 88765 34689888899999999999999889999999999999999999999999997 899999997
Q ss_pred ----cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 162 ----FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 162 ----~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
.|.++ ... +|+ +.|++.+++ ++++|++++||||||.+++.+ |+++|+++|++||+||+|..
T Consensus 129 ~~~~~g~~~~~v~---~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~ 194 (370)
T 2z61_A 129 FIRFLGAKPVFCD---FTV-ESLEEALSD------KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNG 194 (370)
T ss_dssp HHHHTTCEEEEEC---SSH-HHHHHHCCS------SEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTT
T ss_pred HHHHcCCEEEEeC---CCH-HHHHHhccc------CceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhh
Confidence 45554 111 788 999998876 799999999999999999976 88899999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQI 315 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~ 315 (463)
+.++ + ...++..+ + +..+++++++|+||++ |++|+|+||++ +++++++.+..... ..++++.+.|.
T Consensus 195 ~~~~-g-~~~~~~~~-~------~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (370)
T 2z61_A 195 LVYE-G-KCYSAIEF-D------ENLEKTILINGFSKLY-AMTGWRIGYVI---SNDEIIEAILKLQQNLFISAPTISQY 261 (370)
T ss_dssp CBSS-S-CCCCGGGT-C------TTCSSEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cccC-C-CCcCHHHc-c------CCCCcEEEEecChhcc-CCccceEEEEE---ECHHHHHHHHHHHhhcccCCCHHHHH
Confidence 8773 3 23344332 0 1234789999999999 89999999999 58899999988765 55688999999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
++.++|+. . ...+.++++++++++++++.+.|+++ |+.+..+++++|+|++++ . +.
T Consensus 262 a~~~~l~~-------~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~------------~~ 317 (370)
T 2z61_A 262 AALKAFEK-------E--TEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIG--E------------DG 317 (370)
T ss_dssp HHGGGGSH-------H--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCS--S------------CH
T ss_pred HHHHHHhc-------c--CHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecC--C------------CH
Confidence 98888751 0 13445678889999999999999998 888888899999995543 1 24
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.++...+++++||.+.||+.|+. .+.+++||+++.+++++++++++|+++++
T Consensus 318 ~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 318 REFAYKLLKEKFVALTPGIGFGS-KGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHHHHHCEECEEGGGGCG-GGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 55555655688999999999875 24568999999888999999999998764
No 19
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=3.3e-43 Score=354.78 Aligned_cols=378 Identities=21% Similarity=0.297 Sum_probs=295.8
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.++.++..++++.++.+...+.+++..|+++|||+.|.|+..+ . .++.+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~----------------------~-----~~~~v~~a~ 58 (407)
T 2zc0_A 6 YLAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPEL----------------------I-----PRAVLGEIA 58 (407)
T ss_dssp GSCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTT----------------------S-----CHHHHHHHH
T ss_pred hhhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchh----------------------C-----CHHHHHHHH
Confidence 4788898999998888888776655567789999999887411 1 156788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+........ |++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 59 ~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~vl~~~p~~~~~~ 136 (407)
T 2zc0_A 59 KEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI-DPGDVVITENPSYINTL 136 (407)
T ss_dssp HHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHH
Confidence 887765311245 9888899999999999998888988889999999999999999999997 899999997
Q ss_pred -----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ +.+..++|+ +.|++.++.....+.++++|+ +++|+||||.+++.+++++|+++|++||++||+||
T Consensus 137 ~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De 215 (407)
T 2zc0_A 137 LAFEQLGAKIEGVPVDNDGMRV-DLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDT 215 (407)
T ss_dssp HHHHTTTCEEEEEEEETTEECH-HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEcccCCCCCCH-HHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 56555 222235899 999999873211123688885 56999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.++ +....++..+ +..+++++++||||++ + +|+|+||++ +++++++.+..... ..++++.
T Consensus 216 ~~~~~~~~-~~~~~~~~~~--------~~~~~~i~~~s~sK~~-~-~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~ 281 (407)
T 2zc0_A 216 AYNFMRYE-GGDIVPLKAL--------DNEGRVIVAGTLSKVL-G-TGFRIGWII---AEGEILKKVLMQKQPIDFCAPA 281 (407)
T ss_dssp TTTTSBSS-CSSCCCGGGG--------CSSCCEEEEEESTTTT-C-TTSCCEEEE---CCHHHHHHHHHHHTTTTSSSCH
T ss_pred CCcccccC-CCCCCChhhc--------CCCCCEEEEccccccc-C-CCcceEEEe---cCHHHHHHHHHHHHhhcCCCCH
Confidence 99998773 3333444433 3334789999999999 7 999999999 58899999987765 4567799
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.|.++..+++.. . +. .+.+++++.++++++++.+.|++ .||+.+..|.+++|+|++++ .+.
T Consensus 282 ~~~~~~~~~l~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~------ 345 (407)
T 2zc0_A 282 ISQYIALEYLKRG-----Y---FEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLP--EGA------ 345 (407)
T ss_dssp HHHHHHHHHHHTT-----H---HHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECS--TTC------
T ss_pred HHHHHHHHHHHcC-----C---chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcC--CCC------
Confidence 9999998888531 1 22 34556788899999999999987 57888878888999996553 221
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..++...+++++||.+.||..|+.. .+.+++||+++ .+++++++++++|+++++++.
T Consensus 346 ----~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 346 ----DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp ----CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHh
Confidence 24455555555559999999988653 23568999999 478999999999999987653
No 20
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=2.5e-44 Score=363.11 Aligned_cols=360 Identities=16% Similarity=0.207 Sum_probs=288.0
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
++++.+++++.++.+...+.+ ..|+++|||+.|.|+. +. ++.+.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~idl~~g~~~~------------------------~~-----~~~v~~a~~~ 71 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE--HGPLPLINMAVGIPDG------------------------PT-----PQGIIDHFQK 71 (404)
T ss_dssp CHHHHTSCCCTTC-------C--CCSSCCEECCCCSCSS------------------------CC-----CHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHh--cCCCCEEecCCcCCCC------------------------CC-----CHHHHHHHHH
Confidence 788888998888877654433 3467799999999874 32 7888888888
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
.+... ....|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 72 ~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~ 148 (404)
T 2o1b_A 72 ALTIP--ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI-NPGDYVLLPDPGYTDYLA 148 (404)
T ss_dssp HTTCH--HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCSSHHH
T ss_pred HHhCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHH
Confidence 77541 24579888899999999999998888988887 799999999999999999997 899999997
Q ss_pred ----cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 ----FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 ----~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ + .+++.+|+ +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++||+||
T Consensus 149 ~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 221 (404)
T 2o1b_A 149 GVLLADGKPVPLNLEPPHYLPDW-SKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDF 221 (404)
T ss_dssp HHHHTTCEEEEEECCTTTCCCCG-GGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEEC
T ss_pred HHHHCCCEEEEeccCcccCcCCH-HHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 45555 2 23566899 999999976 79999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.++ + .+.++..+. ...+++++++|+||++ |++|+|+||++ +++++++.+..... ..++++.
T Consensus 222 ~~~~~~~~-g-~~~~~~~~~-------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~ 288 (404)
T 2o1b_A 222 AYGAFGFD-A-KNPSILASE-------NGKDVAIEIYSLSKGY-NMSGFRVGFAV---GNKDMIQALKKYQTHTNAGMFG 288 (404)
T ss_dssp TTTTCBSS-S-CCCCGGGST-------THHHHEEEEEESTTTT-TCGGGCCEEEE---ECHHHHHHHHHHHHHHCCCCCH
T ss_pred cchhcccC-C-CCCChhhcC-------CCCCCEEEEEecchhc-cCchhheEeEe---cCHHHHHHHHHHHhhccCCCCH
Confidence 99998773 3 233443321 1124689999999999 88999999998 58999999987765 5678899
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
+.|.++..+|+. ...+.+++++.++++++.+.+.|+++ |+.+..+++++|+|++++ .+
T Consensus 289 ~~~~a~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~--------- 346 (404)
T 2o1b_A 289 ALQDAAIYALNH----------YDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETP--PG--------- 346 (404)
T ss_dssp HHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECC--TT---------
T ss_pred HHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCC--CC---------
Confidence 999999888741 13345678888999999999999998 888888899999996553 22
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
.+..+++..+++++||.+.||..|+.. +.+++||+++.+++++++++++|++++++
T Consensus 347 -~~~~~l~~~l~~~~gi~v~~g~~f~~~-~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 347 -YDSEQFEQFLVQEKSILVAPGKPFGEN-GNRYVRISLALDDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp -CCHHHHHHHHHHHHCEECEESGGGCGG-GTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred -CCHHHHHHHHHHHCCEEEeCchhhCcC-CCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 124566666677789999999998752 45689999998889999999999887653
No 21
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=2.1e-43 Score=357.10 Aligned_cols=372 Identities=15% Similarity=0.141 Sum_probs=286.8
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
.++.+.....++.+..+...+++.... |+++|+|+.|+|.... . +.+. |+.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~-----------------~--~~~~-----~~~v~~ 62 (413)
T 3t18_A 7 TIKRATWNNGPDLAFDINNKANAAIEKYGREAVINAALGTLLDDK-----------------G--KIIA-----LPSVYD 62 (413)
T ss_dssp SCTTTCCCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCBCTT-----------------S--CBCC-----CHHHHH
T ss_pred hhhhcccCCCCChHHHHHHHHhhhhhhccccceEeccccCccCCC-----------------C--CcCC-----hHHHHH
Confidence 358888889999999999998888876 7789999999983200 0 0122 777777
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------ 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------ 161 (463)
++.+.... ...+|++..|.+++|+++++++...++.. ++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 63 a~~~~~~~---~~~~Y~~~~g~~~lr~~la~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~~~-~~gd~Vl~~~p~~~~ 137 (413)
T 3t18_A 63 RLDEMDRS---HIASYAPIEGEKDYRKIVIDTLFGPYKPE-GYISAIATPGGTGAIRSAIFSYL-DEGDPLICHDYYWAP 137 (413)
T ss_dssp HHHHSCHH---HHHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHC-CSSCEEEEESSCCTH
T ss_pred HHHhcCcc---cccCcCCCCCCHHHHHHHHHHHhcccCcc-ccCcEEEcCccHHHHHHHHHHhc-CCCCEEEECCCCccc
Confidence 76554332 34689988999999999999997665432 44599999999999999999998 999999997
Q ss_pred -------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCcee-EEEEECC-CCCCccCCCHHHHHHHHHHhh-----
Q 041151 162 -------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVR-AMVIINP-GNPTGQCLSEANLREILRFCY----- 222 (463)
Q Consensus 162 -------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~-~i~l~~p-~NPtG~~~s~~~l~~l~~~a~----- 222 (463)
.|.++ + ..++++|+ +.|++.+++.... +++ +|++++| |||||.+++.+++++|+++|+
T Consensus 138 ~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~ 214 (413)
T 3t18_A 138 YRKICEEFGRNFKTFEFFTDDFAFNI-DVYKEAIDEGIRD--SDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAED 214 (413)
T ss_dssp HHHHHHHHTCEEEEECCBCTTSSBCH-HHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCeEEEeeccCCCCCcCH-HHHHHHHHHHhhc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 56655 2 34579999 9999998752111 456 7788899 999999999999999999999
Q ss_pred -hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 223 -QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 223 -~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++|++||+||+|.++.++ +....++....+++ .++..+|+++||||+| |++|+|+||++....++++++.+.+
T Consensus 215 ~~~~~~li~De~y~~~~~~-~~~~~~~~~~~~~~----~~~~~~i~~~S~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~ 288 (413)
T 3t18_A 215 KDKKITLIVDVAYLEFAGD-GDQQRKFFEKFSNL----PRNLFVVVAFSMSKSH-TAYGLRSGAAVGISSSKEIIEEFEA 288 (413)
T ss_dssp TTCEEEEEEECTTGGGSSS-SSTTTGGGGGGTTC----CTTEEEEEEEEHHHHT-TCGGGCCEEEEEEESCHHHHHHHHH
T ss_pred cCCcEEEEEecccccccCC-hhhHHHHHHHHhhc----CCCeeEEEEEecCccC-CCcCcCcEEEEEecCCHHHHHHHHH
Confidence 899999999999998873 44334444333333 3443469999999999 9999999999831118999999887
Q ss_pred hhh-h----cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeee
Q 041151 302 IAS-I----ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 302 ~~~-~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~ 376 (463)
... . ...++.+.|.++..+++. ..+..+.++.+++++.++++++++.+.|+++ |+.+..|+++||+|++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~ 362 (413)
T 3t18_A 289 SLAHSARCNWSNGTHAAQNILIELERA-----ENKKIYEQELVDLRNMLKSRADVFVTAAKEN-KLTMIPYFGGFFTFIP 362 (413)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSSSCEEEE
T ss_pred HHHHhhhccccCCChHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCCCceEEEEeC
Confidence 653 1 245789999999988852 2222245566678899999999999999998 8999999999999965
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+. +..++. ..|.++||.+.|| .+++||+++ .+++++ +++|+++++++.+
T Consensus 363 ~~---------------~~~~~~-~~l~~~gv~v~~g--------~~~iRis~~~~~~~~~---l~~l~~~l~~~~~ 412 (413)
T 3t18_A 363 TD---------------KAFDIV-KDLEKENIFTIPS--------AKGIRVAICGVGEEKI---PKLVQRLAFYTNK 412 (413)
T ss_dssp CS---------------CHHHHH-HHHHHTTEECEEC--------SSEEEECTTTSCGGGH---HHHHHHHHHHHHC
T ss_pred CC---------------CHHHHH-HHHHhCCEEEecC--------CCceEEEEeeCCHHHH---HHHHHHHHHHHhc
Confidence 42 234544 4578899999996 248999999 577777 9999998887653
No 22
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=2.2e-44 Score=363.60 Aligned_cols=372 Identities=14% Similarity=0.204 Sum_probs=294.4
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
++++..++++.++.+...+ .+.++|+|+.|+|++ |. |+.+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~ 47 (410)
T 3e2y_A 2 AKRIEGLDSNVWVEFTKLA-----ADPSVVNLGQGFPDI------------------------SP-----PSYVKEELSK 47 (410)
T ss_dssp CGGGTTCCCCHHHHTTTTT-----TSTTSEECSSCCCCS------------------------CC-----CHHHHHHHHH
T ss_pred chhhccCCccHHHHHHHHh-----cCCCeEEecCCCCCC------------------------CC-----CHHHHHHHHH
Confidence 4577788888888776532 346799999999986 44 8899999988
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
.+... ...+|++..|..++|+++++++++.+|+++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 48 ~~~~~--~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~ 124 (410)
T 3e2y_A 48 AAFID--NMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEP 124 (410)
T ss_dssp HHTCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHH
T ss_pred HHhCc--cccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHH
Confidence 88752 45689998899999999999999999999988 799999999999999999997 899999997
Q ss_pred ----cCcee---cC------------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ----FHTTW---KR------------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ----~g~~~---~~------------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ +. .++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|+
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 197 (410)
T 3e2y_A 125 MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDP-RELESKFSS------KTKAIILNTPHNPLGKVYTRQELQVIADLCV 197 (410)
T ss_dssp HHHHTTCEEEEEECEECCCCSSCCBGGGEECCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeccccccccccccccCCcCCH-HHHHhhcCC------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHH
Confidence 45544 11 3567899 999998876 7999999999999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
+||+++|+||+|..+.++ +..+.++..+. ...+++|++.|+||++ |++|+|+||++ +++++++.+.+.
T Consensus 198 ~~~~~li~De~~~~~~~~-~~~~~~~~~~~-------~~~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~ 265 (410)
T 3e2y_A 198 KHDTLCISDEVYEWLVYT-GHTHVKIATLP-------GMWERTITIGSAGKTF-SVTGWKLGWSI---GPAHLIKHLQTV 265 (410)
T ss_dssp HHTCEEEEECTTTTCBCT-TCCCCCGGGST-------TCGGGEEEEEEHHHHS-SCGGGCCEEEE---CCHHHHHHHHHH
T ss_pred HcCcEEEEEhhhhhcccC-CCCCCCHHHcC-------CccCeEEEEecchhhc-CCCCceEEEEE---ECHHHHHHHHHH
Confidence 999999999999998883 44444554331 2345789999999999 89999999999 699999999877
Q ss_pred hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC-C
Q 041151 303 AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL-P 380 (463)
Q Consensus 303 ~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~-~ 380 (463)
.. ..++++.+.|.++..+++... ..+.....+.+++++.++++++.+.+.|+++ |+.+..|++++|+|+++.. +
T Consensus 266 ~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 341 (410)
T 3e2y_A 266 QQNSFYTCATPLQAALAEAFWIDI---KRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLG 341 (410)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHHH---TTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGC
T ss_pred HHhhccCCChHHHHHHHHHHHhhh---ccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhh
Confidence 65 577889999999988874100 0000012334567888999999999999998 8998899999999977642 1
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----CCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----GIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+. +. ......++.+++..+++++||.+.||+.|+... +.+++|||++.+++++++++++|++
T Consensus 342 ~~~-~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 342 ADL-SD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCC-TT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred ccc-cc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence 110 00 000001134677778889999999999997532 3569999999999999999999975
No 23
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=5.4e-44 Score=356.58 Aligned_cols=337 Identities=13% Similarity=0.163 Sum_probs=279.9
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+|+++|||+.|++.+ +. |+.+++++.+.+.. ....|++ .| .++|++
T Consensus 21 ~g~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~-~~-~~lr~~ 66 (377)
T 3fdb_A 21 YGQGVLPLWVAESDF------------------------ST-----CPAVLQAITDAVQR---EAFGYQP-DG-SLLSQA 66 (377)
T ss_dssp SCTTSEECCSSCCCS------------------------CC-----CHHHHHHHHHHHHT---TCCSSCC-SS-CCHHHH
T ss_pred cCCCeeeecccCCCC------------------------CC-----CHHHHHHHHHHHHc---CCCCCCC-CC-HHHHHH
Confidence 578899999998775 44 88999999988876 3568988 77 899999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cCCCcccChHHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KRQQIGVLIINDL 179 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~~~~~~d~~~~l 179 (463)
+++++++.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +.+.. +|+ +.|
T Consensus 67 la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~d~-~~l 143 (377)
T 3fdb_A 67 TAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT-PAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG-INL-HDV 143 (377)
T ss_dssp HHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS-CCH-HHH
T ss_pred HHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC-CCH-HHH
Confidence 999999999999999999999999999999999997 899999997 45555 33323 899 999
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++.+++ ++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++.....++..+
T Consensus 144 ~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-------- 209 (377)
T 3fdb_A 144 EKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSD-------- 209 (377)
T ss_dssp HHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCH--------
T ss_pred HHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHc--------
Confidence 999987 789999999999999999999999999999999999999999999888421334444332
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
+..+++++++|+||++ |++|+|+||+++ +++++++.+.+... .+++++.+.|.++.++++. ..++.
T Consensus 210 ~~~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----------~~~~~ 276 (377)
T 3fdb_A 210 TAASVCITITAPSKAW-NIAGLKCAQIIF--SNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRY----------GTDFL 276 (377)
T ss_dssp HHHHHEEEEECSTTTT-TCGGGCCEEEEC--CSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHH----------CHHHH
T ss_pred cCCCcEEEEEeChHhc-cCcchhheEEEe--CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc----------cHHHH
Confidence 1234789999999999 899999999885 57889999988765 5678899999998888741 13445
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
+++++.++++++.+.+.|++ +||+.+..+++++++|++++... .+.+++..+++++||.+.||+.|+
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v~~g~~~~ 344 (377)
T 3fdb_A 277 NQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT------------IEGSPSEFFIEKAKVAMNDGAWFG 344 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC------------CCSCHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC------------CCHHHHHHHHHhCCEEecCChhcc
Confidence 67888999999999999998 78999999999999996654211 123456677777899999999998
Q ss_pred CCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 418 ~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
.. +.+++||+++.+++++++++++|++++++
T Consensus 345 ~~-~~~~~Ris~~~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 345 ED-GTGFCRLNFATSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp GG-GTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred CC-CCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 63 45699999998889999999999988754
No 24
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=2.3e-43 Score=360.74 Aligned_cols=368 Identities=18% Similarity=0.232 Sum_probs=285.0
Q ss_pred hhhhhhhhhccch-hhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH
Q 041151 9 ESMNENVKKVQYA-VRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA 85 (463)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 85 (463)
..+++++..++++ .+..+.......... ++++|||+.|+|+. +. |+.+
T Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~------------------------~~-----~~~v 87 (449)
T 3qgu_A 37 VQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTE------------------------PL-----PKYI 87 (449)
T ss_dssp CCCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCC------------------------CC-----CHHH
T ss_pred hhhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCC------------------------CC-----CHHH
Confidence 3566777777764 455666666655543 77899999998885 44 8899
Q ss_pred HHHHHHHhhhcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 86 IARAKHYLSLTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 86 ~~a~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
++++.+++.... .....|++..|..+||+++++++. +|+.+++++|++|+|+++++..+ ..++ ++||.|+++
T Consensus 88 ~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~-~~gd~Vl~~~p 163 (449)
T 3qgu_A 88 ADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMF-GSKPTVAVQDP 163 (449)
T ss_dssp HHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHH-CSSSCEEEEES
T ss_pred HHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHh-CCCCEEEEcCC
Confidence 999988877432 245689988999999999999997 78888999999999999999998 8887 899999997
Q ss_pred -----------cCce----------e---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 162 -----------FHTT----------W---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 162 -----------~g~~----------~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
.|.+ + + ..++..|+ +.+ + ++++|++++||||||.+++.+++
T Consensus 164 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~------~~~~v~l~~p~NPtG~~~~~~~l 231 (449)
T 3qgu_A 164 SYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL-SKA-----K------RTDIIFFCSPNNPTGAAATRAQL 231 (449)
T ss_dssp CCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG-GGC-----C------CCSEEEEESSCTTTCCCCCHHHH
T ss_pred CChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh-hHc-----C------CCCEEEEeCCCCCCCCcCCHHHH
Confidence 4544 3 2 22344454 332 2 78999999999999999999999
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|+++|+++|++||+||+|..+.++ +....++..+. ...+++|++.||||+| |++|+|+||++ ++++
T Consensus 232 ~~l~~l~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~-------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~ 299 (449)
T 3qgu_A 232 TELVNFARKNGSILVYDAAYALYISN-PDCPKTIYEIP-------GADEVAIETCSFSKYA-GFTGVRLGWTV---VPKA 299 (449)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGCCC-TTSCSSGGGST-------TGGGTEEEEEECSGGG-TCTTCCCEEEE---CCTT
T ss_pred HHHHHHHHHCCcEEEEEcchHhhhcC-CCCCCCHhhcc-------CCCCcEEEEecchhhc-CCccceeEEEe---cCHH
Confidence 99999999999999999999998883 33344544331 1134689999999999 99999999999 5777
Q ss_pred HHH--------HHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 295 TVD--------EIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 295 ~~~--------~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
+++ .+.+... ...+++.+.|.++..++.. ....+.++++++++++++++.+.|+++ |+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 369 (449)
T 3qgu_A 300 LKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP---------EGLKEMNAMIKFYKENAQILKTTFTEM-GFSVY 369 (449)
T ss_dssp CBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred HHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeee
Confidence 664 4444444 3457899999999998851 122456678999999999999999998 89988
Q ss_pred cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+++++|+|++++ +. ++.+++..+++++||.+.||..|+. .+.+++||++..+++++++++++|++
T Consensus 370 ~~~~~~~~~~~~~---~~----------~~~~~~~~l~~~~gI~v~pg~~f~~-~~~~~iRis~~~~~e~i~~~l~~l~~ 435 (449)
T 3qgu_A 370 GGDDAPYIWVGFP---GK----------PSWDVFAEILERCNIVTTPGSGYGP-AGEGFVRASAFGSRENILEAVRRFKE 435 (449)
T ss_dssp ESSSSSEEEEECT---TS----------CHHHHHHHHHHHHCEECEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEECC---CC----------CHHHHHHHHHHHCCEEEecchHhCC-CCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 8999999997654 21 3566777778878999999999985 35679999998889999999999999
Q ss_pred HHHHHHHHhccc
Q 041151 446 FNDEFMEQYEDY 457 (463)
Q Consensus 446 ~l~~~~~~~~~~ 457 (463)
++++-..++..|
T Consensus 436 ~~~~~~~~~~~~ 447 (449)
T 3qgu_A 436 AYGKRNASHHHH 447 (449)
T ss_dssp HHC---------
T ss_pred HHHhcCcccccc
Confidence 998776664433
No 25
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-43 Score=354.18 Aligned_cols=353 Identities=18% Similarity=0.238 Sum_probs=283.9
Q ss_pred hccc-hhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhh
Q 041151 17 KVQY-AVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSL 95 (463)
Q Consensus 17 ~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~ 95 (463)
+++. +.+..+.....+..++|+++|||+.|.|+. +. |+.+.+++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~ 53 (376)
T 2dou_A 3 RVPEPSVFLVVDEAKRKARERGVGLIDLSIGSTDL------------------------PP-----PEAPLKALAEALND 53 (376)
T ss_dssp -CCCTHHHHHHHHHHHHHHHTTCCCEECSSCCCCC------------------------CC-----CHHHHHHHHHHTTC
T ss_pred cCCccchHHHHHHHHHHhhccCCCEEeccCCCCCC------------------------CC-----CHHHHHHHHHHHhC
Confidence 3455 777777777777667788999999998874 32 78899998888764
Q ss_pred cCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------
Q 041151 96 TSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------- 161 (463)
Q Consensus 96 ~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------- 161 (463)
.....|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 --~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~ 130 (376)
T 2dou_A 54 --PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT-EPEDLLLLPEVAYPSYFGAARV 130 (376)
T ss_dssp --GGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHH
T ss_pred --CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc-CCCCEEEECCCCcHhHHHHHHH
Confidence 1356788767889999999999988889888887 99999999999999999997 899999997
Q ss_pred cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 162 FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 162 ~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.|.++ + .+++.+|+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+
T Consensus 131 ~g~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~ 203 (376)
T 2dou_A 131 ASLRTFLIPLREDGLADL-KAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ 203 (376)
T ss_dssp TTCEEEEECBCTTSSBCG-GGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred cCCEEEEeeCCCCCCCCH-HHHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence 56655 3 34566899 999999976 7999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIF 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~ 316 (463)
.++ + ...++..+. +..+++++++|+||++ |++|+|+||++ +++++++.+..... ...+++.+.|.+
T Consensus 204 ~~~-~-~~~~~~~~~-------~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~a 270 (376)
T 2dou_A 204 VYE-G-EAPSPLALP-------GAKERVVELFSLSKSY-NLAGFRLGFAL---GSEEALARLERVKGVIDFNQYAGVLRM 270 (376)
T ss_dssp BSS-S-CCCCGGGST-------TGGGTEEEEEEHHHHH-TCGGGCCEEEE---ECHHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred ccC-C-CCCChhhcC-------CCCCcEEEEecchhhc-CChhheeEEEe---cCHHHHHHHHHHHHhcccCCCHHHHHH
Confidence 873 2 222332221 2234689999999999 88999999998 58999999987765 556789999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
+..+|+.. ..+.++.++.++++++.+.+.|+++ +.+..+++++|+|++++ .+. +..
T Consensus 271 ~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~--~~~----------~~~ 326 (376)
T 2dou_A 271 GVEALKTP----------KEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLP--EGV----------DDL 326 (376)
T ss_dssp HHHHHTSC----------HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECC--TTC----------CHH
T ss_pred HHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECC--CCC----------CHH
Confidence 99988631 2345567888999999999999886 77777889999996553 221 234
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
++...++ ++||.+.||..|+.. +.+++||+++.+++++++++++|++++
T Consensus 327 ~~~~~l~-~~gi~v~~g~~f~~~-~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 327 EFGLRLV-ERGVALAPGRGFGPG-GKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp HHHHHHH-HTTEECEEGGGGCGG-GTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HCCEEEcCchhhCCC-CCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 5555544 559999999988752 456899999988899999999998764
No 26
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=1.6e-43 Score=358.90 Aligned_cols=363 Identities=13% Similarity=0.104 Sum_probs=282.7
Q ss_pred hhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCC---CCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHH
Q 041151 8 YESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVG---NPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPAD 84 (463)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 84 (463)
..++++++..+++++++.+...+.+.. .+++|||+.| +|+. +.|. ++.
T Consensus 21 ~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~i~l~~G~y~d~~~----------------------~~~~-----~~~ 71 (420)
T 4f4e_A 21 SMSLFSAVELAPRDPILGLNEAFNADT--RPTKVNLGVGVYTNEDG----------------------KIPL-----LRA 71 (420)
T ss_dssp -CCTTTTCCCCCCCHHHHHHHHHHHCC--CSSCEECCCCSCCCTTS----------------------CCCC-----CHH
T ss_pred ccCHhhcCCcCCCChHHHHHHHHHhcC--CCCcEEeeeeeeECCCC----------------------CccC-----cHH
Confidence 456899999999999998877665432 3579999999 5664 2232 589
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHH--HHHHhcCCCCEEEE
Q 041151 85 AIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQT--LNCVIRGEGDGVVL 160 (463)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~--~~~l~~~~gd~Vlv 160 (463)
+.+++.+++.. ....+|++..|.+++|+++++++...++..++++ +|++|+|+++++..+ +.+++ ++||+|++
T Consensus 72 v~~a~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~-~~gd~Vlv 148 (420)
T 4f4e_A 72 VRDAEKARVEA--GLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL-NPKAKVAI 148 (420)
T ss_dssp HHHHHHHHHHT--CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEE
T ss_pred HHHHHHHHhcc--CCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHh-CCCCEEEE
Confidence 99999888876 2457899999999999999999976555445788 999999999999999 45666 89999999
Q ss_pred c-------------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L-------------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p-------------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|+++ + .+++++|+ +.|++.++.. .+++++|++++||||||.+++.+++++|+++|
T Consensus 149 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~ 224 (420)
T 4f4e_A 149 SDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNF-DGMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVV 224 (420)
T ss_dssp EESCCHHHHHHHHHTTCCEEEEECEETTTTEECH-HHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCeEEEeeeeccccCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Confidence 7 56665 2 34788999 9999999731 11688999999999999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH--
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI-- 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l-- 299 (463)
+++|++||+||+|..+.++.+....++..+. + ..+++|+++||||+| |++|+|+||+++..+++++++.+
T Consensus 225 ~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~ 296 (420)
T 4f4e_A 225 KARRLVPFLDIAYQGFGESIEADAAAVRLFA-A------ANLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARVLS 296 (420)
T ss_dssp HHHTCEEEEEESCTTSSSCTTGGGHHHHHHH-H------TTCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHH
T ss_pred HHCCcEEEEccccccccCCcchhhHHHHHHH-h------cCCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHHHH
Confidence 9999999999999999884222334444432 2 234789999999999 99999999986432456665543
Q ss_pred --Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCceeE
Q 041151 300 --YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE-QFVRESKGILESLRRRARMMTDGFNSC---RNVVCNFTEGAMY 372 (463)
Q Consensus 300 --~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~ 372 (463)
..... ...+++.+.|.++..++.. ..+. .+.++.++++++|+++++.+.+.|+++ +|+.+..|++++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~ 371 (420)
T 4f4e_A 297 QLKRVIRTNYSNPPTHGGAIVAAVLAS-----PELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMF 371 (420)
T ss_dssp HHHHHHHTTTSSCCSHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSE
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEE
Confidence 22222 3456788999999888752 2221 234557788999999999999999986 4788888999999
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
+|+.++ .+.+..+++++||.+.|+ .|||++ .+++++++++++|++++
T Consensus 372 ~~~~~~-----------------~~~~~~~l~~~gI~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 372 SYSGLT-----------------SAQVDRLREEFGIYAVST-----------GRICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp EECCCC-----------------HHHHHHHHHHHCEECCTT-----------SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred EEeCCC-----------------HHHHHHHHHhCCEEecCC-----------CeEEEecCCHHHHHHHHHHHHHHh
Confidence 995442 234667788999999984 299999 58899999999999876
No 27
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3e-43 Score=355.82 Aligned_cols=363 Identities=19% Similarity=0.289 Sum_probs=290.3
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.++.+.... ...++|||+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 48 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSALA-----TRIGAVNLGQGFPDE------------------------DG-----PPKMLQAAQ 48 (411)
T ss_dssp CCGGGGGGSSCHHHHHHHHH-----HTTTCEESSCSSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHHHHh-----hcCCeeeccCcCCCC------------------------CC-----CHHHHHHHH
Confidence 67888888888777655432 234589999998874 33 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|++++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 49 ~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~-~~gd~Vl~~~~~y~~~~ 124 (411)
T 2o0r_A 49 DAIAG---GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV-EPGSEVLLIEPFYDSYS 124 (411)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHH
T ss_pred HHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHH
Confidence 88875 256899888999999999999998889888898 99999999999999999997 899999997
Q ss_pred -----cCcee---cC----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 -----FHTTW---KR----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 -----~g~~~---~~----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +. .++.+|+ +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++||
T Consensus 125 ~~~~~~g~~~~~v~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li 197 (411)
T 2o0r_A 125 PVVAMAGAHRVTVPLVPDGRGFALDA-DALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVI 197 (411)
T ss_dssp HHHHHTTCEEEEEECEEETTEEECCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCEEEEeeccccccCCCCCH-HHHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 45555 21 2467999 999999876 79999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+||+|..+.++ +..+.++..+. ...++++++.|+||.+ |++|+|+||++ +++++++.+..... ..++
T Consensus 198 ~De~~~~~~~~-g~~~~~~~~~~-------~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~ 265 (411)
T 2o0r_A 198 TDEVYEHLVFD-HARHLPLAGFD-------GMAERTITISSAAKMF-NCTGWKIGWAC---GPAELIAGVRAAKQYLSYV 265 (411)
T ss_dssp EECTTTTCBCT-TCCCCCGGGST-------TTGGGEEEEEEHHHHT-TCTTTCEEEEE---CCHHHHHHHHHHHHHHTSC
T ss_pred EEccccccccC-CCCCcChhhcc-------CCCCCEEEEeechhhc-CCccceEEEEe---eCHHHHHHHHHHHhhccCC
Confidence 99999998873 33334443320 1135789999999999 89999999999 58999998887664 4677
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..+|+. ...+.+++++.++++++++.+.|++. |+.+..+++++|+|++++ ..
T Consensus 266 ~~~~~~~a~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~------ 326 (411)
T 2o0r_A 266 GGAPFQPAVALALDT----------EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPR--PL------ 326 (411)
T ss_dssp CCTTHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECG--GG------
T ss_pred CChHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecC--CC------
Confidence 788899888888741 12345567888999999999999988 888888899999996654 20
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------CCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------GIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..+..+++..+++++||.+.||..|.... +.+++||+++.+++++++++++|++++++.+
T Consensus 327 --~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 327 --GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp --TCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC---
T ss_pred --CCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhccC
Confidence 001245666667778899999999884322 3568999999888999999999998876653
No 28
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=4.8e-43 Score=355.03 Aligned_cols=371 Identities=16% Similarity=0.125 Sum_probs=282.5
Q ss_pred hhhhhccchhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
.+.....++.+..+...+.+..+. |.++|+|+.|+|.... . +.+. |+.+.+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~-----------------~--~~~~-----~~~v~~a~~ 66 (418)
T 3rq1_A 11 HAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEE-----------------G--NLVF-----LKTVKEEYL 66 (418)
T ss_dssp TTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTT-----------------S--CBCC-----CHHHHHHHH
T ss_pred hcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCC-----------------C--Cccc-----cHHHHHHHH
Confidence 344456677788888888888776 6789999999883100 0 1132 777777765
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.... ....|++..|.++||+++++++...++.. .+++|++|+|+++++..++.+++ +|||+|+++
T Consensus 67 ~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~ 141 (418)
T 3rq1_A 67 SLSDS---EHVGYAPIAGIPDFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYT-EPGDEVLTADWYWGAYRV 141 (418)
T ss_dssp TCCHH---HHHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHS-CTTCEEEEESSCCTHHHH
T ss_pred Hhccc---ccCCCCCCCChHHHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhc-CCCCEEEECCCCchhHHH
Confidence 54332 34689999999999999999997665432 23399999999999999999998 999999997
Q ss_pred ----cCcee---c--CCCcccChHHHHHHHHHHHHhcCCcee-EEEEECC-CCCCccCCCHHHHHHHHHHhh------hC
Q 041151 162 ----FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVR-AMVIINP-GNPTGQCLSEANLREILRFCY------QE 224 (463)
Q Consensus 162 ----~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~-~i~l~~p-~NPtG~~~s~~~l~~l~~~a~------~~ 224 (463)
.|.++ + ..++++|+ +.|++.+++.... +++ +|++++| |||||.+++.+++++|+++|+ +|
T Consensus 142 ~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~ 218 (418)
T 3rq1_A 142 ICSDTGRTLVTYSLFDEHNNFNH-EAFQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN 218 (418)
T ss_dssp HHHHTTCEEEEECSBCTTSSBCH-HHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHcCCEEEEEeeeCCCCCcCH-HHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC
Confidence 56665 2 34578999 9999999852111 345 7888899 999999999999999999999 89
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
|++||+||+|.++.+ .+....++....+++ .++..+|+++||||++ |++|+|+||++....++++++.+.+...
T Consensus 219 ~~~li~De~y~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 292 (418)
T 3rq1_A 219 NVIIGIDVAYLDYSG-EKDEVRAFFNKFSHL----PKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIADEFFEVNK 292 (418)
T ss_dssp EEEEEEECTTGGGSS-CHHHHHGGGGGGTTC----CTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEecccccccC-ChHHHHHHHHHHHhc----CCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999998876 222222333322222 3333368999999999 9999999999821118899998877653
Q ss_pred -h----cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 305 -I----ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 305 -~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
. ..+++.+.|.++..++++. ..++.+.++.+++++.++++++.+.+.|+++ |+.+..++++||+|+++.
T Consensus 293 ~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~- 366 (418)
T 3rq1_A 293 STSRATWSNICRPAMRTMANIVADP----AKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD- 366 (418)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT-
T ss_pred HHHhhccCCCchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC-
Confidence 1 2458899999999988631 2233456666678899999999999999988 899999999999996543
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..+++ +.|.++||.+.||. +++|||++ .+++++++++++|+++++++
T Consensus 367 --------------~~~~~~-~~l~~~gi~v~~g~--------~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 367 --------------SANAIC-EELKKEHIYVIALA--------NGIRIAACGIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp --------------THHHHH-HHHHHTTEECEECS--------SEEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred --------------CHHHHH-HHHHhCCEEEecCC--------CCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 134444 56788999999962 37999998 69999999999999998764
No 29
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-43 Score=352.79 Aligned_cols=351 Identities=16% Similarity=0.189 Sum_probs=281.4
Q ss_pred hccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhc
Q 041151 17 KVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLT 96 (463)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~ 96 (463)
++++++++.+...++++..+| ++|||+.|+|+. +. |+.+.+++.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~-- 50 (376)
T 3ezs_A 3 TFEPYPFERLRALLKEITPKK-RGLDLGIGEPQF------------------------ET-----PKFIQDALKNHTH-- 50 (376)
T ss_dssp CCCCCHHHHHHHHHTTCCCSS-CCCBCSSCCCCS------------------------CC-----CHHHHHHHHTTGG--
T ss_pred CCCcchHHHHHHHHHhhhccC-CEEEeCCCCCCC------------------------CC-----CHHHHHHHHHhhh--
Confidence 356778888887777766677 899999999885 33 8889988887763
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC--CCEEEEc-------------
Q 041151 97 SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE--GDGVVLL------------- 161 (463)
Q Consensus 97 ~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~--gd~Vlvp------------- 161 (463)
....|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++ ||+|+++
T Consensus 51 --~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~-~~~~gd~vl~~~p~~~~~~~~~~~ 127 (376)
T 3ezs_A 51 --SLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL-FDYQNPTIAYPNPFYQIYEGAAKF 127 (376)
T ss_dssp --GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT-TTCSSCEEEEEESCCTHHHHHHHH
T ss_pred --hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc-CCCCCCEEEEecCCcHhHHHHHHH
Confidence 35789998999999999999999888988899999999999999999999997 89 9999997
Q ss_pred cCcee---cCC-CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 162 FHTTW---KRQ-QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 162 ~g~~~---~~~-~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.|.++ +.+ ..++++ .+++.+.+ ++++|++++||||||.+++.+++++|+++|++||++||+||+|..+
T Consensus 128 ~g~~~~~~~~~~~~~~~~--~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 199 (376)
T 3ezs_A 128 IKAKSLLMPLTKENDFTP--SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEI 199 (376)
T ss_dssp TTCEEEEEECCGGGTSCC--CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred cCCEEEEcccCCCCCcch--hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhh
Confidence 55555 222 123332 45556665 7899999999999999999999999999999999999999999998
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIF 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~ 316 (463)
.++ + ...++......++. +..+++++++|+||++ |++|+|+||++ +++++++.+.+... .+++++.+.|.+
T Consensus 200 ~~~-~-~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a 271 (376)
T 3ezs_A 200 YEN-T-PPPSLLEACMLAGN--EAFKNVLVIHSLSKRS-SAPGLRSGFIA---GDSRLLEKYKAFRAYLGYTSANAIQKA 271 (376)
T ss_dssp BSS-S-CCCCHHHHHHHTTC--TTCTTEEEEEESTTTT-TCGGGCCEEEE---ECHHHHHHHHHHHTTTCCCCCHHHHHH
T ss_pred ccC-C-CCCCHHHccccccc--cccCcEEEEecchhcc-CCccceeEEEe---eCHHHHHHHHHHHhhhcCCCChHHHHH
Confidence 883 3 34455443221100 1345789999999999 89999999999 59999999988765 567889999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
+..+++. ..+.++.++.++++++.+.+.|+ ++. .|.+++|+|++++ . ..
T Consensus 272 ~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~--~-------------~~ 320 (376)
T 3ezs_A 272 SEAAWLD-----------DRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ--N-------------GE 320 (376)
T ss_dssp HHHHHHC-----------SHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS--C-------------HH
T ss_pred HHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC--C-------------HH
Confidence 9988853 12345678889999999999997 444 6788999996654 1 45
Q ss_pred HHHHHHHHhcCeEeeCCCCCCC-CCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQ-KEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~-~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+++..+++++||.+.||+.|+. ..+.+++||+++.+++++++++++|++++++
T Consensus 321 ~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 321 NFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 5666666658999999999984 2355799999998889999999999988754
No 30
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=4e-43 Score=356.58 Aligned_cols=375 Identities=16% Similarity=0.185 Sum_probs=291.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++.+++++.++.+...+ .++++|||+.|.|+..+ . .++.+.+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~idl~~g~~~~~~----------------------~-----~~~~v~~a~ 67 (425)
T 1vp4_A 20 KISKIGQNMKSSIIREILKFA-----ADKDAISFGGGVPDPET----------------------F-----PRKELAEIA 67 (425)
T ss_dssp HCCHHHHTCCCCCHHHHTTTT-----TSTTCEECCCCSCCGGG----------------------S-----CHHHHHHHH
T ss_pred hhhhhhhcCCCcHHHHHHHhc-----cCCCceeCCCCCCCccc----------------------C-----CHHHHHHHH
Confidence 467778788888777665432 25679999999887411 1 166788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.........|++..|..++|+++++++.+++|++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 68 ~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~ 146 (425)
T 1vp4_A 68 KEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGA 146 (425)
T ss_dssp HHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHHH
T ss_pred HHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHH
Confidence 87776521124689888899999999999998777887 888999999999999999999997 899999997
Q ss_pred ------cCcee---cCCCcccChHHHHHHHHHHHHhc--CCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KRQQIGVLIINDLQQSVAQARSK--GITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~--~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +.+..++|+ +.|++.+++.... +.++++|+ +++||||||.+++.+++++|+++|+++|++||
T Consensus 147 ~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li 225 (425)
T 1vp4_A 147 INAFRQYLANFVVVPLEDDGMDL-NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIV 225 (425)
T ss_dssp HHHHHTTTCEEEEEEEETTEECH-HHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCEEEEeccCCCCCCH-HHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 56655 222235899 9999998762110 11689985 67999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+||+|..+.++ +....++..+ +..+++|+++||||++ + +|+|+||++ +++++++.+..... .+++
T Consensus 226 ~De~~~~~~~~-g~~~~~~~~~--------~~~~~~i~~~s~sK~~-~-~G~r~G~~~---~~~~~~~~l~~~~~~~~~~ 291 (425)
T 1vp4_A 226 EDDPYGALRYE-GETVDPIFKI--------GGPERVVLLNTFSKVL-A-PGLRIGMVA---GSKEFIRKIVQAKQSADLC 291 (425)
T ss_dssp EECSSTTCBCS-SCCCCCHHHH--------HCTTTEEEEEESTTTT-C-GGGCEEEEE---CCHHHHHHHHHHHHHHHSS
T ss_pred EECCCccccCC-CCCCcCHHHh--------CCCCCEEEEecccccc-c-cccceEEEe---eCHHHHHHHHHHhhhhcCC
Confidence 99999998873 3444566554 2234689999999999 8 999999999 58999999887764 4567
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC---CcccccCCceeEEeeeccCChhhH
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CR---NVVCNFTEGAMYSFPQIRLPPKAI 384 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~p---g~~~~~~~g~~~~~~~~~~~~~~~ 384 (463)
++.+.|.++..+|+.. . +.++.+++++.++++++.+.+.|++ .| |+.+..|.+++|+|++++ .+.
T Consensus 292 ~~~~~~~a~~~~l~~~-----~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~--~~~- 360 (425)
T 1vp4_A 292 SPAITHRLAARYLERY-----D---LLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP--EGF- 360 (425)
T ss_dssp CCHHHHHHHHHHHHHS-----C---HHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC--TTC-
T ss_pred CCHHHHHHHHHHHhcC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcC--CCC-
Confidence 8999999999887521 1 2344566788899999999999987 45 688888889999996653 211
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+..+++..++ ++||.+.||..|+.. .+.+++||+++ .+++++++++++|+++++++.++
T Consensus 361 ---------~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 361 ---------DTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp ---------CTTTTHHHHH-HHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHH-HCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 2334455544 559999999988652 23568999999 57899999999999999887665
No 31
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=5e-43 Score=351.11 Aligned_cols=357 Identities=19% Similarity=0.295 Sum_probs=286.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.+..+..... ..++|+|+.|.|+. +. |+.+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 53 (386)
T 1u08_A 8 PQSKLPQLGTTIFTQMSALAQ-----QHQAINLSQGFPDF------------------------DG-----PRYLQERLA 53 (386)
T ss_dssp CCCSCCCCCCCHHHHHHHHHH-----HTTCEECCCSSCSS------------------------CC-----CHHHHHHHH
T ss_pred cchhhhcCCccHHHHHHHHHh-----cCCeEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 477888888887766544332 24689999998874 32 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..++.+++ ++||.|+++
T Consensus 54 ~~~~~---~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~ 129 (386)
T 1u08_A 54 HHVAQ---GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYA 129 (386)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHH
T ss_pred HHHHh---hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC-CCCCEEEEeCCCchhHH
Confidence 88765 346898888999999999999988889888899 99999999999999999997 899999997
Q ss_pred -----cCcee---cC--CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 -----FHTTW---KR--QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 -----~g~~~---~~--~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ +. .++.+|+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|+++|++||+|
T Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (386)
T 1u08_A 130 PAIALSGGIVKRMALQPPHFRVDW-QEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISD 202 (386)
T ss_dssp HHHHHTTCEEEEEECCTTTCCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHHHHcCCEEEEeecCcccCcCCH-HHHHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEE
Confidence 45555 22 2578999 999999875 7999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|..+.|+ +....++..+.. ..+++++++|+||++ |++|+|+||++ +++++++.+..... ..++++
T Consensus 203 e~~~~~~~~-g~~~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~ 270 (386)
T 1u08_A 203 EVYEHINFS-QQGHASVLAHPQ-------LRERAVAVSSFGKTY-HMTGWKVGYCV---APAPISAEIRKVHQYLTFSVN 270 (386)
T ss_dssp CTTTTCBCC-SSCCCCGGGSHH-------HHTTEEEEEEHHHHT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTSSCC
T ss_pred ccccccccC-CCCCcChhcccC-------ccCcEEEEecchhhc-CCcccceEEEE---cCHHHHHHHHHHHHhhccCCC
Confidence 999998873 333334433210 123689999999999 89999999999 58999999887764 467888
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+|+.. ..+.++++++++++++.+.+.|++. |+.+..+++++|+|++++ ..
T Consensus 271 ~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~-------- 329 (386)
T 1u08_A 271 TPAQLALADMLRAE----------PEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYS--AV-------- 329 (386)
T ss_dssp HHHHHHHHHHHHHC----------THHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECT--TT--------
T ss_pred hHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecC--CC--------
Confidence 99999888887421 2335567889999999999999998 888888899999996654 11
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
+..+..+++..+++++||.+.||..|+.. .+.+++||+++.+++++++++++|++
T Consensus 330 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 330 STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp CCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 00124566666677889999999988642 24568999999888999999999864
No 32
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.1e-42 Score=350.76 Aligned_cols=341 Identities=16% Similarity=0.250 Sum_probs=279.7
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
++|||+.|+|.. .+. |+.+++++.+.+... ....|++..|..++++++++
T Consensus 40 ~~id~~~g~~~~-----------------------~~~-----~~~v~~a~~~~~~~~--~~~~y~~~~g~~~l~~~l~~ 89 (407)
T 3nra_A 40 RPVDFSHGDVDA-----------------------HEP-----TPGAFDLFSAGVQSG--GVQAYTEYRGDLGIRDLLAP 89 (407)
T ss_dssp CCEETTSCCTTT-----------------------SCC-----CTTHHHHHHHHHHHT--HHHHSCCTTCCHHHHHHHHH
T ss_pred ceeeecCcCCCC-----------------------CCC-----cHHHHHHHHHHHhcC--CCCCcCCCCCCHHHHHHHHH
Confidence 389999998872 133 788999998888752 34579888899999999999
Q ss_pred HHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-------CCCcccC
Q 041151 119 FIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-------RQQIGVL 174 (463)
Q Consensus 119 ~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-------~~~~~~d 174 (463)
++.+.+|.++++ ++|++|+|+++++..++.+++ ++||+|+++ .|.++ + .+.+.+|
T Consensus 90 ~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d 168 (407)
T 3nra_A 90 RLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLD 168 (407)
T ss_dssp HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBC
T ss_pred HHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcC
Confidence 999989988877 699999999999999999997 899999997 55555 2 3778899
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHh
Q 041151 175 IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMD 254 (463)
Q Consensus 175 ~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 254 (463)
+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.++ +....++..+.+
T Consensus 169 ~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~-g~~~~~~~~~~~- 239 (407)
T 3nra_A 169 L-TGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYA-GASYTHLRAEAA- 239 (407)
T ss_dssp H-HHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCT-TCCCCCGGGCTT-
T ss_pred H-HHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCCChhhcCc-
Confidence 9 999999987 7999999999999999999999999999999999999999999998883 444445443210
Q ss_pred cCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 255 MGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 255 ~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
...+++++++||||++ |++|+|+||++ +++++++.+..... ...+++.+.|.++..+++...
T Consensus 240 -----~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~-------- 302 (407)
T 3nra_A 240 -----VDAENVVTIMGPSKTE-SLSGYRLGVAF---GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP-------- 302 (407)
T ss_dssp -----SCGGGEEEEECSSSTT-CCGGGCCEEEE---ECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT--------
T ss_pred -----ccCCcEEEEeCccccc-CCCeeeEEEEE---cCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccc--------
Confidence 1245789999999999 89999999999 58999999988765 567778889988888876321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg 413 (463)
.+.++.+++++++++.+.+.|+++||+.+..+++++|+|+++... + .+..+++..+++++||.+.||
T Consensus 303 --~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~gi~v~~g 369 (407)
T 3nra_A 303 --GWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-A----------VAPAEFVKILRLQAGVVVTPG 369 (407)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB-S----------SCHHHHHHHHHHHHCEECEEG
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC-C----------CCHHHHHHHHHHhCCEEEeCc
Confidence 123345677888999999999998899998899999999655421 1 124556666667789999999
Q ss_pred CCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 414 ~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+.|+. .+.+++||+++.+++++++++++|+++++++
T Consensus 370 ~~~~~-~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 370 TEFSP-HTADSVRLNFSQDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp GGTCT-TCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhCC-CCCCEEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 99985 3567899999988999999999999998765
No 33
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1e-42 Score=351.74 Aligned_cols=362 Identities=20% Similarity=0.290 Sum_probs=294.6
Q ss_pred hhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 8 YESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
+..+++++.+++++.++.+...+.+.+.+|+++|+|+.|.|+. +. |+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~ 63 (409)
T 2gb3_A 13 MDVFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDL------------------------KT-----PEVFFE 63 (409)
T ss_dssp ---CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCS------------------------CC-----CTHHHH
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCCCC------------------------CC-----CHHHHH
Confidence 4678999999999999999999988888889999999999874 32 678888
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------ 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------ 161 (463)
++ +.+.. ....|++..|..++|+++++++...+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 64 a~-~~l~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~Vl~~~~~~~~ 138 (409)
T 2gb3_A 64 RI-YENKP---EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVLEPFYAN 138 (409)
T ss_dssp HH-HHTCC---SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTH
T ss_pred HH-HHHhc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCchh
Confidence 88 77754 34679888899999999999999888988899999999999999999999997 899999997
Q ss_pred -------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEE
Q 041151 162 -------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVL 228 (463)
Q Consensus 162 -------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~v 228 (463)
.|.++ +. +++.+ + +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++|
T Consensus 139 ~~~~~~~~g~~~~~v~~~~~~~~~~-~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 210 (409)
T 2gb3_A 139 YNAFAKIAGVKLIPVTRRMEEGFAI-P-QNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFL 210 (409)
T ss_dssp HHHHHHHHTCEEEEEECCGGGTSCC-C-TTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCEEEEeccCCCCCCcc-H-HHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEE
Confidence 45555 22 23444 7 889888876 7999999999999999999999999999999999999
Q ss_pred EecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-hHHHHHHhhhh-hc
Q 041151 229 LGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-KTVDEIYKIAS-IA 306 (463)
Q Consensus 229 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l~~~~~-~~ 306 (463)
|+||+|..+.++ + ...++ + +++ .+++++++|+||++ |++|+|+||+++ ++ ++++.+..... ..
T Consensus 211 i~Dea~~~~~~~-~-~~~~~--~-~~~------~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~l~~~l~~~~~~~~ 275 (409)
T 2gb3_A 211 IVDEVYSEIVFR-G-EFASA--L-SIE------SDKVVVIDSVSKKF-SACGARVGCLIT---RNEELISHAMKLAQGRL 275 (409)
T ss_dssp EEECTTTTCBCS-S-CCCCG--G-GSC------CTTEEEEEESTTTT-TCGGGCCEEEEC---SCHHHHHHHHHHHHHSC
T ss_pred EEECcccccccC-C-CCCCc--c-ccC------CCCEEEEecchhcc-CCccceEEEEEE---CcHHHHHHHHHHHhccC
Confidence 999999998773 2 22332 1 111 23589999999999 899999999994 66 89998887765 33
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIE 385 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~ 385 (463)
+++.+.|.++.++|+.. ..+.+++++.++++++++.+.|+++ |+.+ ..|++++++|++++ +
T Consensus 276 -~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~---~--- 337 (409)
T 2gb3_A 276 -APPLLEQIGSVGLLNLD----------DSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELP---V--- 337 (409)
T ss_dssp -CCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECS---S---
T ss_pred -CCCHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeC---C---
Confidence 88999999999888521 2335567888999999999999988 8888 78889999996654 1
Q ss_pred HHhhcCCCChHHHHHHHHHh-----cCeEeeCCCCCCCC--CCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 386 AAKRAGKVPDVFYCLRLLEA-----TGISTVPGSGFGQK--EGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 386 ~~~~~~~~~~~~~~~~ll~~-----~gI~v~pg~~f~~~--~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..++...++++ +||.+.||..|+.. .+.+++||+++.+++++++++++|++++++++
T Consensus 338 -------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 338 -------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp -------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 1245555555555 59999999988752 23569999999888999999999999988764
No 34
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=4.1e-43 Score=356.78 Aligned_cols=376 Identities=15% Similarity=0.204 Sum_probs=290.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++....++.+..+..... ..++|||+.|.|+. +. |+.+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~ 59 (429)
T 1yiz_A 14 DLPKRYQGSTKSVWVEYIQLAA-----QYKPLNLGQGFPDY------------------------HA-----PKYALNAL 59 (429)
T ss_dssp CSSSSCCCCTTCHHHHHHHHHH-----HHCCEECCSSSCSS------------------------CC-----CHHHHHHH
T ss_pred chhHHhhhCCchHHHHHHHHhc-----cCCEEEecCCCCCC------------------------CC-----CHHHHHHH
Confidence 4567777777776665543321 24689999998874 32 78899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.........|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 60 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~p~y~~~ 138 (429)
T 1yiz_A 60 AAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEVIIIEPFFDCY 138 (429)
T ss_dssp HHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTH
T ss_pred HHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCchhH
Confidence 888765211346898888999999999999988889888899 99999999999999999997 899999997
Q ss_pred ------cCcee---c--CC---------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 162 ------FHTTW---K--RQ---------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 162 ------~g~~~---~--~~---------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.|.++ + .. ++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|
T Consensus 139 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~ 211 (429)
T 1yiz_A 139 EPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDN-NELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLC 211 (429)
T ss_dssp HHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCcccccccccccCcccCH-HHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHH
Confidence 45555 2 22 467999 999999875 799999999999999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++||++||+||+|..+.++ +....++..+ + ...++++++.|+||.+ |++|+|+||++ +++++++.+..
T Consensus 212 ~~~~~~li~De~~~~~~~~-g~~~~~~~~~-~------~~~~~~~~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~ 279 (429)
T 1yiz_A 212 KKWNVLCVSDEVYEHMVFE-PFEHIRICTL-P------GMWERTITIGSAGKTF-SLTGWKIGWAY---GPEALLKNLQM 279 (429)
T ss_dssp HHHTCEEEEECTTTTCBCT-TSCCCCGGGS-T------TTGGGEEEEEEHHHHH-TCGGGCCEEEE---SCHHHHHHHHH
T ss_pred HHcCcEEEEeccccccccC-CCCCcChhhc-c------CCcCceEEEecchhcc-CCCCcceEEEE---eCHHHHHHHHH
Confidence 9999999999999998873 3333444332 0 1245789999999999 89999999999 58899999887
Q ss_pred hhh-hcccCChHHHHHHHHhcCC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 302 IAS-IALSPNVPAQIFMGLMVNP-----LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 302 ~~~-~~~~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
... .+++++.+.|.++..+|+. .. ...+.+++++.++++++.+.+.|++. |+.+..+++++|+|+
T Consensus 280 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~ 350 (429)
T 1yiz_A 280 VHQNCVYTCATPIQEAIAVGFETELKRLKS--------PECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVA 350 (429)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHHHTTTTS--------TTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEE
T ss_pred HHhhcccCCChHHHHHHHHHHhcccccccc--------hHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEE
Confidence 664 5678899999998888752 10 12235567888999999999999988 888888889999997
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----CCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----GIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+++-...-+......+..+..+++..+++++||.+.||+.|+... +.+++||+++.+++++++++++|+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 351 DWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG 427 (429)
T ss_dssp ECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSC
T ss_pred EcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhcc
Confidence 664210000000000001234556666678999999999887421 2468999999888999999999988763
No 35
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=2.4e-42 Score=346.20 Aligned_cols=342 Identities=17% Similarity=0.163 Sum_probs=279.7
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
.|+++|||+.|+|++ |. |+.+.+++.+.+.+ ....|++. ..+++++
T Consensus 25 ~g~~~i~~~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~l~~~ 70 (391)
T 3dzz_A 25 LKEKELPMWIAEMDF------------------------KI-----APEIMASMEEKLKV---AAFGYESV--PAEYYKA 70 (391)
T ss_dssp CCTTCEECCSSCCSS------------------------CC-----CHHHHHHHHHHHTT---CCCCCBCC--CHHHHHH
T ss_pred cCCCceeccccCCCC------------------------CC-----CHHHHHHHHHHHhc---CcCCCCCC--CHHHHHH
Confidence 466899999999886 44 89999999988876 45678775 5899999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c----CCCcccCh
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K----RQQIGVLI 175 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~----~~~~~~d~ 175 (463)
+++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ + ...+.+|+
T Consensus 71 la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 149 (391)
T 3dzz_A 71 VADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT-SPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNW 149 (391)
T ss_dssp HHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCH
T ss_pred HHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC-CCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecH
Confidence 999999999998999999999999999999999997 899999997 56655 2 22355999
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhc
Q 041151 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255 (463)
Q Consensus 176 ~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+.|++++++. ++++|++++||||||.+++.+++++|+++|++||++||+||+|+.+.++ +....++..+...
T Consensus 150 -~~l~~~l~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~- 221 (391)
T 3dzz_A 150 -ADLEEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT-DEDITPAFTVDWD- 221 (391)
T ss_dssp -HHHHHHHTST-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS-SCCCCCGGGSCTT-
T ss_pred -HHHHHHHhcc-----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCC-CCCceehhhcCcc-
Confidence 9999999732 7999999999999999999999999999999999999999999998873 4344455433111
Q ss_pred CCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 256 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
..++++++.|+||++ |++|+|+||+++ .++++++.+..... ..++++.+.|.++..++..
T Consensus 222 -----~~d~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------- 283 (391)
T 3dzz_A 222 -----AKNWVVSLISPSKTF-NLAALHAACAII--PNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEE---------- 283 (391)
T ss_dssp -----TGGGEEEEECSHHHH-TCTTTCCEEEEC--CSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH----------
T ss_pred -----ccCcEEEEEeChhhc-cccchhheEEEE--CCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc----------
Confidence 134789999999999 899999999994 23889999887753 3467889999888888741
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
...+.++++++++++++.+.+.|++ +||+.+..+++++++|++++.. + .+..++...+++++||.+.|
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~gi~v~~ 352 (391)
T 3dzz_A 284 GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISAL-G----------MNAEDFCKYLREKTGLIISA 352 (391)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGG-C----------SCHHHHHHHHHHHHCEECEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhc-C----------CCHHHHHHHHHHhCCEEEeC
Confidence 1334567888899999999999998 8999999999999999665421 0 12455665655689999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|+.|+.. +.+++||+++.+++++++++++|+++++++
T Consensus 353 g~~~~~~-~~~~iRis~~~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 353 GNGYRGN-GHEFVRINLACPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp SGGGCTT-GGGEEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred chhhCCC-CCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 9999863 567999999988899999999999988653
No 36
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=3.4e-42 Score=344.12 Aligned_cols=337 Identities=14% Similarity=0.183 Sum_probs=276.4
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
++++|||+.|+|++ +. |+.+.+++.+.+.. ....|++. ..++++++
T Consensus 23 ~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~~~~~l 68 (383)
T 3kax_A 23 NEELIHAWIADMDF------------------------EV-----PQPIQTALKKRIEH---PIFGYTLP--PENIGDII 68 (383)
T ss_dssp SSCCEECCCSSCSS------------------------CC-----CHHHHHHHHHHHHS---CCCCCCCC--CTTHHHHH
T ss_pred CCCeeecccccCCC------------------------CC-----CHHHHHHHHHHHhc---CCCCCCCC--CHHHHHHH
Confidence 46799999998875 44 89999999988875 35677765 57999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c----CCCcccChH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K----RQQIGVLII 176 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~----~~~~~~d~~ 176 (463)
++++.+.+|.++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ + ...+.+|+
T Consensus 69 ~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~- 146 (383)
T 3kax_A 69 CNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFT-KENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDF- 146 (383)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHC-CTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCH-
T ss_pred HHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhC-CCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcH-
Confidence 99999999988899999999999999999999997 899999997 56665 2 12366899
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++++++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|..+.++ +....++..+.+++
T Consensus 147 ~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~- 218 (383)
T 3kax_A 147 EHLEKQFQQ------GVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYA-DHTHTPFASLSEEL- 218 (383)
T ss_dssp HHHHHHHTT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT-TCCCCCGGGSCHHH-
T ss_pred HHHHHHhCc------CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccC-CCCceeHhhcCccc-
Confidence 999999955 8999999999999999999999999999999999999999999998873 44444554432221
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h-cccCChHHHHHHHHhcCCCCCCCchHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I-ALSPNVPAQIFMGLMVNPLKPGDISYEQF 334 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 334 (463)
.+++++++|+||++ |++|+|+||+++ .++++++.+..... . ..+++.+.|.++..++...
T Consensus 219 -----~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---------- 280 (383)
T 3kax_A 219 -----AARTITCMAPSKTF-NIAGLQASIIII--PNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC---------- 280 (383)
T ss_dssp -----HTTEEEEECSHHHH-TCGGGCCEEEEC--CCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC----------
T ss_pred -----cCcEEEEEEChhhc-cCcchhheEEEe--CCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh----------
Confidence 24789999999999 899999999984 36888898887764 2 3478899999999888631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCC
Q 041151 335 VRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg 413 (463)
.++.++++++++++++.+.+.|++ +||+.+..+++++++|++++.+ + .+..+++..+++++||.+.||
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~gi~v~~g 349 (383)
T 3kax_A 281 NDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLLWIDCSAL-N----------LSQDERTKLLEEKGKIIVEPG 349 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSEEEEECGGG-C----------CCHHHHHHHHHHTSCEECEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEEEEEEcccc-C----------CCHHHHHHHHHhhCCEEeECc
Confidence 233556788899999999999988 7899999999999999665421 0 134566666556899999999
Q ss_pred CCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 414 ~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+.|+.. +.+++||+++.+++++++++++|++++
T Consensus 350 ~~~~~~-~~~~iRi~~~~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 350 EKYGLG-GEEHIGINIGCPRSVLEEILNRLRHTF 382 (383)
T ss_dssp GGGCTT-CTTEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred hhhcCC-CCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 999863 567999999988899999999998875
No 37
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=8.3e-43 Score=352.98 Aligned_cols=367 Identities=19% Similarity=0.282 Sum_probs=278.9
Q ss_pred ccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcC
Q 041151 18 VQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTS 97 (463)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~ 97 (463)
...+.++.+...+.+.. .++++|+|+.|.|+... +.+. |+.+++++.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~--------------------~~~~-----~~~v~~a~~~~~~~-- 65 (416)
T 1bw0_A 14 LVFNPIRTVSDNAKPSP-SPKPIIKLSVGDPTLDK--------------------NLLT-----SAAQIKKLKEAIDS-- 65 (416)
T ss_dssp TCCCHHHHHHHTCCCCC-SCSCCEECCCCCTTTTS--------------------CSCC-----CHHHHHHHHHHHHT--
T ss_pred ccccHHHHHHHHHHHhh-cCCCeEEecCcCCCccc--------------------CCCC-----CHHHHHHHHHHhhC--
Confidence 33445665554433222 23569999999986200 0132 88899999888865
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHH------hcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----------
Q 041151 98 GGLGAYSDSRGIPGVRKEVAEFIER------RDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------- 161 (463)
Q Consensus 98 ~~~~~Y~~~~g~~~lr~~ia~~~~~------~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------- 161 (463)
.....|++..|..++|+++++++++ .+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 66 ~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~ 144 (416)
T 1bw0_A 66 QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYETV 144 (416)
T ss_dssp TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHH
T ss_pred CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCcHhHHHH
Confidence 2356898888999999999999983 36777889999999999999999999997 899999997
Q ss_pred ---cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 ---FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 ---~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ ...++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|++||++||+||
T Consensus 145 ~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 217 (416)
T 1bw0_A 145 CKAYGIGMHFYNCRPENDWEADL-DEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE 217 (416)
T ss_dssp HHHTTCEEEEEEEEGGGTTEECH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHcCcEEEEeecCcccCCCCCH-HHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEc
Confidence 56655 223577999 999999876 78999999999999999999999999999999999999999
Q ss_pred cccccccCCCC----CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-hHHHHH----Hhhh
Q 041151 233 VYQQNIYQDER----PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-KTVDEI----YKIA 303 (463)
Q Consensus 233 ay~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l----~~~~ 303 (463)
+|..+.|+ +. ...++..+ +..+++|+++|+||+| +++|+|+||+++ .++ ++++.+ .+..
T Consensus 218 ~~~~~~~~-g~~~~~~~~~~~~~--------~~~~~~i~~~s~sK~~-~~~Glr~G~~~~--~~~~~~~~~~~~~~~~~~ 285 (416)
T 1bw0_A 218 IYAGMVFK-GKDPNATFTSVADF--------ETTVPRVILGGTAKNL-VVPGWRLGWLLY--VDPHGNGPSFLEGLKRVG 285 (416)
T ss_dssp TTTTCBCC-SSCTTCCCCCTTSS--------CCSCCEEEEEESTTTT-SCGGGCCEEEEE--ECTTCSCHHHHHHHHHHH
T ss_pred cccccccC-CCCCCCCccCHHHc--------cCCCcEEEEecchhhC-CCCCceEEEEEe--eCchhhHHHHHHHHHHHh
Confidence 99998873 33 23343322 3344689999999998 889999999996 233 344433 3332
Q ss_pred hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 304 SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 304 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
...++++.+.|.++..+|+... ..+.++.+++++++++++.+.|+++||+.+..|.+++|+|+.++... .
T Consensus 286 ~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-~ 355 (416)
T 1bw0_A 286 MLVCGPCTVVQAALGEALLNTP---------QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK-Y 355 (416)
T ss_dssp HHHTCSCHHHHHHHHHHHHSSC---------HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG-B
T ss_pred ccccCCCcHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH-c
Confidence 2356789999999988875211 23345677889999999999999988998888888999996653110 0
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
....+..+++..+++++||.+.||..|+. .+++||+++.+++++++++++|+++++++.
T Consensus 356 ------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~iRis~~~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 356 ------RDIKTDVEFFEKLLEEENVQVLPGTIFHA---PGFTRLTTTRPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp ------SSCCSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred ------CCCCCHHHHHHHHHHHCCEEEecccccCC---CCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 00013456666666789999999998874 248999999888999999999999887643
No 38
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=1e-41 Score=347.13 Aligned_cols=363 Identities=18% Similarity=0.216 Sum_probs=288.5
Q ss_pred hhccchhhhhHHHHHHHHHH-hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhh
Q 041151 16 KKVQYAVRGELYLRASELQK-EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLS 94 (463)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~ 94 (463)
..+..++++.+.....++.. +|+++|||+.|.|+. +. |+.+++++.+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~ 71 (437)
T 3g0t_A 21 KDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGL------------------------PA-----PQIGIETEIQKLR 71 (437)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHTCCCEECCCCSCCS------------------------CC-----CHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcCCCEEeccCcCCCC------------------------CC-----CHHHHHHHHHHHh
Confidence 34667888888888777653 588899999999885 43 8899999998887
Q ss_pred hcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCC--EEEEc----------
Q 041151 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD--GVVLL---------- 161 (463)
Q Consensus 95 ~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd--~Vlvp---------- 161 (463)
. .....|++..|..++|+++++++++.+|+++++++|++|+|+++++..++.+++. ++|| +|+++
T Consensus 72 ~--~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~ 149 (437)
T 3g0t_A 72 E--GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQ 149 (437)
T ss_dssp H--TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHH
T ss_pred C--CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHH
Confidence 5 1337899999999999999999999999999999999999999999999999841 5899 99997
Q ss_pred ---cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 ---FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 ---~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|.++ ..+++.+|+ +.|++++++. ++++|++++||||||.+++.+++++|+++|++||++||+||+
T Consensus 150 ~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~ 223 (437)
T 3g0t_A 150 CRILGQKFESFDLFEYRGEKLR-EKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLA 223 (437)
T ss_dssp HHHHTCCCEEEEGGGGCTTHHH-HHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCEEEEEeecCCCCccCH-HHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcc
Confidence 55555 245567899 9999999432 799999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCc---cch-HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH-H----------
Q 041151 234 YQQNIYQDERPF---VSS-KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD-E---------- 298 (463)
Q Consensus 234 y~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~-~---------- 298 (463)
|+.+.+++..+. .++ ..+ + +..+++++++|+||++ |++|+|+||+++ ++++++ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~ 292 (437)
T 3g0t_A 224 YFGMDFRKDYSHPGEPLYQPSV-A------NYTDNYILALSSSKAF-SYAGQRIGVLMI---SGKLYEREYPDLEESFGR 292 (437)
T ss_dssp TTTCCTTSCCCSTTSSCCCCCG-G------GTCSCEEEEEESTTTT-SCGGGCCEEEEE---CHHHHHCBCGGGHHHHSC
T ss_pred hhhcccCCCcCcccccchhhcc-C------CCCCcEEEEEcCccCC-CCccceeEEEEE---CHHHhhhhhhcccccccc
Confidence 999877422221 011 122 1 1245789999999999 899999999994 888888 7
Q ss_pred -------HHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-----
Q 041151 299 -------IYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN----- 365 (463)
Q Consensus 299 -------l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~----- 365 (463)
+.+... ..++++.+.|.++..+++. ...+.++.++++++++++++.+.+.|+++ |+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 364 (437)
T 3g0t_A 293 LRFGEALSSSALYALSSGATHSAQWGMAAMLKA-------CNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDG 364 (437)
T ss_dssp SBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHH-------HHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEET
T ss_pred cchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhC-------cHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccC
Confidence 666554 4678899999999988741 00010015678889999999999999998 88887
Q ss_pred --cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHH
Q 041151 366 --FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMES 442 (463)
Q Consensus 366 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~ 442 (463)
++.+++|+|++++ +. +..++.. .|.++||.+.|+..|+.. ..+++|||++ .+++++++++++
T Consensus 365 ~~~~~~~~~~~~~~~---~~----------~~~~l~~-~L~~~gi~v~~~~~~~~~-~~~~iRis~~~~~~e~i~~~~~~ 429 (437)
T 3g0t_A 365 NEPLADGFYFTVGYK---GM----------DSSKLIE-KFVRYGMCAITLKTTGSK-RNEAMRICTSLLPESQFPDLEKR 429 (437)
T ss_dssp TEECCSSSEEEEEET---TC----------CHHHHHH-HHHHTTEECEESTTTTCC-CTTCEEEECSSSCGGGHHHHHHH
T ss_pred CCCCceeEEEEEecC---CC----------CHHHHHH-HHHHcCeEEeeccccCCC-CCCEEEEEEecCCHHHHHHHHHH
Confidence 4489999997665 11 2445544 455679999999999863 3357999999 589999999999
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|++++++
T Consensus 430 l~~~~~~ 436 (437)
T 3g0t_A 430 LQMLNAE 436 (437)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988753
No 39
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=5.1e-42 Score=345.17 Aligned_cols=365 Identities=17% Similarity=0.208 Sum_probs=283.7
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++..++++.++.+...+ .++++|||+.|.|+..+ . .++.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~----------------------~-----~~~~v~~a~ 56 (397)
T 2zyj_A 9 AFGKGAGRIQASTIRELLKLT-----QRPGILSFAGGLPAPEL----------------------F-----PKEEAAEAA 56 (397)
T ss_dssp HSCGGGGGCCCCHHHHHHHHH-----TSTTCEEESSCCCCGGG----------------------C-----CHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHhhc-----cCCCceecCCCCCCchh----------------------C-----CHHHHHHHH
Confidence 488888888888777665432 25679999999887411 1 156788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.........|++..|..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 57 ~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~ 129 (397)
T 2zyj_A 57 ARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAI 129 (397)
T ss_dssp HHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC------CChhhEEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHH
Confidence 77766421124688888899999999999994 678899999999999999999997 899999997
Q ss_pred -----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ +.+..++|+ +.|++.+++. ++++|+ +++||||||.+++.+++++|+++|+++|++||+||
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De 203 (397)
T 2zyj_A 130 QAFRLQGPRFLTVPAGEEGPDL-DALEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDD 203 (397)
T ss_dssp HHHHTTCCEEEEEEEETTEECH-HHHHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHcCCEEEecCcCCCCCCH-HHHHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 46555 222235899 9999999862 688885 57999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.++ +..+.++..+..+. . .+++++++|+||++ + +|+|+||++ +++++++.+..... ..++++.
T Consensus 204 ~~~~~~~~-g~~~~~~~~~~~~~----~-~~~~i~~~s~sK~~-~-~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~ 272 (397)
T 2zyj_A 204 AYRELYFG-EARLPSLFELAREA----G-YPGVIYLGSFSKVL-S-PGLRVAFAV---AHPEALQKLVQAKQGADLHTPM 272 (397)
T ss_dssp TTTTCBCS-SCCCCCHHHHHHHH----T-CCCEEEEEESTTTT-C-GGGCCEEEE---CCHHHHHHHHHHHHHHHSSCCH
T ss_pred CcccccCC-CCCCCchhhhCccc----C-CCeEEEEecccccc-c-ccceeEEEe---cCHHHHHHHHHHHHhhcCCCCH
Confidence 99998873 34445565552210 0 03689999999999 7 999999999 58999999887664 4567799
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-CcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CR-NVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~p-g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.|.++..+|+.. . + ++.+++++.++++++.+.+.|++ +| |+.+..|.+++|+|++++ .+
T Consensus 273 ~~~~a~~~~l~~~-----~---~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~--~~------- 334 (397)
T 2zyj_A 273 LNQMLVHELLKEG-----F---S-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELP--KG------- 334 (397)
T ss_dssp HHHHHHHHHHTTT-----H---H-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECS--TT-------
T ss_pred HHHHHHHHHHHhC-----C---H-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcC--CC-------
Confidence 9999999998632 1 2 44566788899999999999987 57 688888889999996553 22
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+..++... |.++||.+.||..|+.. .+.+++||+++ .+++++++++++|+++++++.+
T Consensus 335 ---~~~~~~~~~-l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 335 ---LSAEGLFRR-ALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp ---CCHHHHHHH-HHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHH-HHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 124455544 55669999999988642 23568999999 5789999999999999987654
No 40
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=1.3e-41 Score=345.98 Aligned_cols=360 Identities=18% Similarity=0.234 Sum_probs=279.2
Q ss_pred CCChhhhhhhhhhccch-hhhhHHHHHHHHHH--hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCC
Q 041151 5 ALDYESMNENVKKVQYA-VRGELYLRASELQK--EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVF 81 (463)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (463)
++....+++++..++++ .+..+......... +++++|+|+.|+|++ +.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~----- 70 (432)
T 3ei9_A 20 YKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTE------------------------PI----- 70 (432)
T ss_dssp CCCSCCCCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCS------------------------CC-----
T ss_pred eeeccccChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCC------------------------CC-----
Confidence 34456677888888874 66666555444433 356899999999886 54
Q ss_pred cHHHHHHHHHHhhhcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
|+.+++++.+++.... ....+|++..|..+||+++++|+. .++.+++++|++|+|+++++..+ ..++ ++||.|+
T Consensus 71 ~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~--~~~~~~~~~i~~t~G~~~al~~l-~~l~-~~gd~Vl 146 (432)
T 3ei9_A 71 PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFY--GGLGIGDDDVFVSDGAKCDISRL-QVMF-GSNVTIA 146 (432)
T ss_dssp CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHH-CTTCCEE
T ss_pred CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHH--ccCCCCcceEEECCChHHHHHHH-HHHc-CCCCEEE
Confidence 8999999998887532 144689888899999999999996 36668889999999999999974 7777 8999999
Q ss_pred Ec-------------cCc------------ee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 160 LL-------------FHT------------TW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 160 vp-------------~g~------------~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
++ .|. ++ + ..++..|+ +. . +++++|++++||||||.+
T Consensus 147 ~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-----~------~~~~~v~l~~p~NPtG~~ 214 (432)
T 3ei9_A 147 VQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDL-ST-----V------GRTDIIFFCSPNNPTGAA 214 (432)
T ss_dssp EEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCG-GG-----C------CCCSEEEEESSCTTTCCC
T ss_pred EeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCCh-hh-----C------CCCCEEEEeCCCCCCCCC
Confidence 97 231 22 1 12333444 32 1 278999999999999999
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++.+++++|+++|++||++||+||+|.++.++ +. ..++..+ + ...+++|+++||||+| |++|+|+||++
T Consensus 215 ~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~-~~-~~~~~~~-~------~~~~~~i~~~S~SK~~-g~~G~r~G~~~- 283 (432)
T 3ei9_A 215 ATREQLTQLVEFAKKNGSIIVYDSAYAMYMSD-DN-PRSIFEI-P------GAEEVAMETASFSNYA-GFTGVRLGWTV- 283 (432)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS-SC-CSSGGGS-T------TGGGTEEEEEESHHHH-CTTTTCCEEEE-
T ss_pred CCHHHHHHHHHHHHHcCcEEEEccchHhhccC-CC-CCChhhc-C------CCCCeEEEEecchhcc-CCcccceEEEE-
Confidence 99999999999999999999999999998773 32 2344332 1 1234689999999999 99999999999
Q ss_pred cCCChhH--------HHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 289 TNIPPKT--------VDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 289 ~~~~~~~--------~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
+++++ ++.+.+... ...+++.+.|.++.+++.. ....+.+++++.++++++++.+.|+++
T Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~ 352 (432)
T 3ei9_A 284 --IPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP---------EGLEAMHKVIGFYKENTNIIIDTFTSL 352 (432)
T ss_dssp --CCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --EChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 47666 777777654 4566889999999888741 122456778999999999999999998
Q ss_pred CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHH
Q 041151 360 RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAI 439 (463)
Q Consensus 360 pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~ 439 (463)
|+.+..+.+++|+|++++ . .++.+++..+++++||.+.||+.|+. .+.+++|||+..++++++++
T Consensus 353 -g~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~ll~~~gv~v~~g~~f~~-~~~~~iRis~~~~~e~l~~~ 417 (432)
T 3ei9_A 353 -GYDVYGGKNAPYVWVHFP--N-----------QSSWDVFAEILEKTHVVTTPGSGFGP-GGEGFVRVSAFGHRENILEA 417 (432)
T ss_dssp -TCCEEECSSSSEEEEECT--T-----------SCHHHHHHHHHHHHCEECEEGGGGCG-GGTTEEEEECCSCHHHHHHH
T ss_pred -CceecCCCcceEEEEECC--C-----------CCHHHHHHHHHHHCCEEEeCchHhCC-CCCCEEEEEecCCHHHHHHH
Confidence 888888888899996664 1 13566777788888999999999985 35679999999888999998
Q ss_pred HHHHHHH
Q 041151 440 MESFKKF 446 (463)
Q Consensus 440 ~~~l~~~ 446 (463)
+++|++-
T Consensus 418 l~rl~~~ 424 (432)
T 3ei9_A 418 CRRFKQL 424 (432)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888643
No 41
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1.3e-41 Score=342.22 Aligned_cols=342 Identities=16% Similarity=0.228 Sum_probs=272.5
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
++++||+.|+++. +. |+.+.+++.+.+.. ....|++. ..++|++++
T Consensus 31 ~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~l~~~la 76 (399)
T 1c7n_A 31 NEVVPLSVADMEF------------------------KN-----PPELIEGLKKYLDE---TVLGYTGP--TEEYKKTVK 76 (399)
T ss_dssp TTCCCCCSSSCSS------------------------CC-----CHHHHHHHHHHHHH---CCCSSBCC--CHHHHHHHH
T ss_pred CCceeeeecCCCC------------------------CC-----CHHHHHHHHHHHhc---CCCCCCCC--cHHHHHHHH
Confidence 4799999998764 33 78899999888765 34678765 799999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---C-CcccChHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---Q-QIGVLIIN 177 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~-~~~~d~~~ 177 (463)
+++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. + .+.+|+ +
T Consensus 77 ~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~-~ 154 (399)
T 1c7n_A 77 KWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDF-Q 154 (399)
T ss_dssp HHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCH-H
T ss_pred HHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcH-H
Confidence 9998888988889999999999999999999997 899999997 45555 22 1 355899 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.|++++++. ++++|++++||||||.+++.+++++|+++|++||++||+||+|..+.++ +....++..+.+++
T Consensus 155 ~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~-- 226 (399)
T 1c7n_A 155 KLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP-GYEHTVFQSIDEQL-- 226 (399)
T ss_dssp HHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT-TCCCCCGGGSCHHH--
T ss_pred HHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCcccHHHcCccc--
Confidence 999999732 7999999999999999999999999999999999999999999998873 33334444331110
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc-cCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL-SPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
.++++++.|+||++ |++|+|+||+++ .++++++.+..... ..+ +++.+.|.++.++++. ..
T Consensus 227 ----~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~----------~~ 289 (399)
T 1c7n_A 227 ----ADKTITFTAPSKTF-NIAGMGMSNIII--KNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE----------CG 289 (399)
T ss_dssp ----HTTEEEEECSHHHH-TCGGGCCEEEEC--CCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH----------CH
T ss_pred ----cCcEEEEEeChhhc-cccchheEEEEE--CCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC----------Ch
Confidence 23689999999999 899999999995 23678898887765 333 6788999988887641 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
++.+++++.++++++.+.+.|++ +||+.+..+++++++|++++ .. + .+..++...+++++||.+.||.
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~--------~-~~~~~~~~~l~~~~gi~v~~g~ 358 (399)
T 1c7n_A 290 KWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFR--AL--------K-MDHKAMEEFMIHKAQIFFDEGY 358 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECG--GG--------C-CCHHHHHHHHHHTTCCCCEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcc--cC--------C-CCHHHHHHHHHHhCCEEEeCcc
Confidence 34566788899999999999998 88999888999999996553 21 0 1244555555557899999999
Q ss_pred CCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.|+. .+.+++||+++..++++++++++|+++++++++
T Consensus 359 ~~~~-~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 359 IFGD-GGIGFERINLAAPSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp GGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCC-CCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence 8874 244689999997689999999999999887654
No 42
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=1.3e-41 Score=344.03 Aligned_cols=359 Identities=18% Similarity=0.226 Sum_probs=263.1
Q ss_pred chhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcC--
Q 041151 20 YAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTS-- 97 (463)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~-- 97 (463)
++.+..+.....+.. .+.++|+|+.|.|+. .|. +.+.+.+++.+.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~-----------------------~~~----~~~~~~~~~~~~~~~~~~~ 65 (417)
T 3g7q_A 14 HSGITRLMEDLNDGL-RTPGAIMLGGGNPAH-----------------------IPA----MQDYFQTLLTDMVESGKAA 65 (417)
T ss_dssp --CHHHHHHHHHC------CCEECSCCCCCC-----------------------CHH----HHHHHHHHHHHHHHHTHHH
T ss_pred cccHHHHHHHHHhhc-cCCCceEecCcCCCC-----------------------CCh----HHHHHHHHHHHHhhCCccc
Confidence 444544444333222 236799999999984 010 01344555555544310
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC-----EEEEc---------c-
Q 041151 98 GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD-----GVVLL---------F- 162 (463)
Q Consensus 98 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-----~Vlvp---------~- 162 (463)
.....|+++.|..+||+++|+++.+++|+.+++++|++|+|+++++..++.+++ ++|| .|+++ .
T Consensus 66 ~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~ 144 (417)
T 3g7q_A 66 DALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADS 144 (417)
T ss_dssp HHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-BC----CCBEEEESSCCCHHHHHC-
T ss_pred ceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc-CCCccCCcceEEEeCCCccccchhh
Confidence 123579999999999999999999999999999999999999999999999997 8987 88874 0
Q ss_pred ----------Ccee---cCC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 163 ----------HTTW---KRQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 163 ----------g~~~---~~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
+..+ +.+ .+.+|+ +.|+ +.+ ++++|++++||||||.+++.+++++|+++|++||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~--~~~------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~ 215 (417)
T 3g7q_A 145 GLEDDLFVSARPNIELLPEGQFKYHVDF-EHLH--IGE------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIP 215 (417)
T ss_dssp ----CCEEECCCEEEEEGGGEEEEECCG-GGCC--CCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhccccCcccccCCcccccccCH-HHhc--ccc------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCE
Confidence 0111 222 467898 8887 444 799999999999999999999999999999999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA 306 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~ 306 (463)
||+||+|+.+.. +....... + +..+++|++.|||| + +++|+|+||++ +++++++.+..... ..
T Consensus 216 li~De~~~~~~~--~~~~~~~~---~------~~~~~~i~~~s~sK-~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~ 279 (417)
T 3g7q_A 216 LVIDNAYGVPFP--GIIFSEAR---P------LWNPNIILCMSLSK-L-GLPGSRCGIII---ANDKTITAIANMNGIIS 279 (417)
T ss_dssp EEEECTTCTTTT--CCBCSCCC---C------CCCTTEEEEEESGG-G-TCTTSCCEEEE---CCHHHHHHHHHHHHHHC
T ss_pred EEEeCCCccccc--cccccccc---c------CCCCCEEEEEechh-c-cCCCcceEEEE---eCHHHHHHHHHhhccee
Confidence 999999986321 11111110 0 22347899999999 7 78999999999 69999999988775 56
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHhhc-CC--CcccccCCceeEEeeeccCChh
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG-ILESLRRRARMMTDGFNS-CR--NVVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~p--g~~~~~~~g~~~~~~~~~~~~~ 382 (463)
++++.+.|.++..+++... +.++..+ +++.|+++++.+.+.|.+ ++ |+.+..|++++|+|++++.. +
T Consensus 280 ~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~-~ 350 (417)
T 3g7q_A 280 LAPGGMGPAMMCEMIKRND--------LLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDL-P 350 (417)
T ss_dssp CCCCSHHHHHHHHHHHTTC--------HHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTC-S
T ss_pred eCCCcHHHHHHHHHHcCcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCC-C
Confidence 7789999999999986432 2333333 677889999988888876 55 47778899999999665421 1
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC------CcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG------IFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~------~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+..+++ ..|.++||.+.||+.|+.... .+++|||++.+++++++++++|+++++++.+
T Consensus 351 ----------~~~~~l~-~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 351 ----------ITTELLY-QRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp ----------SCHHHHH-HHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHH-HHHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 1234444 456788999999999865321 4699999998889999999999999988765
No 43
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=2.2e-41 Score=340.12 Aligned_cols=357 Identities=14% Similarity=0.108 Sum_probs=272.2
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCC---CCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVG---NPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.++...+++.++.+...+.+. ...++|||+.| +|+. +.|. ++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~y~d~~~----------------------~~~~-----~~~v~~a~ 53 (397)
T 3fsl_A 3 QKVDAYAGDPILTLMERFKED--PRSDKVNLSIGLYYNEDG----------------------IIPQ-----LQAVAEAE 53 (397)
T ss_dssp TTCCCCCCCHHHHHHHHHHTC--CCSCCEECSSCCCCCTTS----------------------CCCC-----CHHHHHHH
T ss_pred ccCCCCCCCchhhHHHHHhcC--CCCCeEEEeeeEEECCCC----------------------CccC-----cHHHHHHH
Confidence 445567777766665444322 23569999999 5553 2232 58999999
Q ss_pred HH-HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHH--HHHhcCCCCEEEEc---
Q 041151 90 KH-YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTL--NCVIRGEGDGVVLL--- 161 (463)
Q Consensus 90 ~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~--~~l~~~~gd~Vlvp--- 161 (463)
.+ ++.. ....+|++..|..++|+++++++...++..++++ +|++|+|+++++..++ ..++ ++||+|+++
T Consensus 54 ~~~~~~~--~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~-~~gd~vl~~~p~ 130 (397)
T 3fsl_A 54 ARLNAQP--HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWVSDPT 130 (397)
T ss_dssp HHHHHSC--CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCCEEEESSC
T ss_pred HhhccCc--cccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc-CCCCeEEEeCCC
Confidence 88 7765 2457899989999999999999976555555788 9999999999999995 4566 899999997
Q ss_pred ----------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ----------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ----------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|.++ + .+++++|+ +.|++.+++. .++++++++++||||||.+++.+++++|+++|+++|
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 206 (397)
T 3fsl_A 131 WENHVAIFAGAGFEVSTYPWYDEATNGVRF-NDLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARE 206 (397)
T ss_dssp CHHHHHHHHHTTCCEEEECCEETTTTEECH-HHHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHcCCceEEEeeeeccCCcCcH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCC
Confidence 56655 2 35789999 9999999731 116788888999999999999999999999999999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh---
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--- 302 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--- 302 (463)
++||+||+|.++.++.+....++..+. + ..+++|+++||||++ |++|+|+||++++.++++.++.+...
T Consensus 207 ~~li~De~~~~~~~~~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~ 278 (397)
T 3fsl_A 207 LIPFLDIAYQGFGAGMEEDAYAIRAIA-S------AGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAGRVLGQLKA 278 (397)
T ss_dssp CEEEEEESCTTSSSCTTGGGHHHHHHH-H------TTCCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEecCchhhccCcccccHHHHHHH-h------cCCCEEEEecccccc-cCcCCCeeEEEEecCCHHHHHHHHHHHHH
Confidence 999999999998873222333444432 2 234789999999999 99999999997533456666554322
Q ss_pred -h-hhcccCChHHHHHHHHhcCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeee
Q 041151 303 -A-SIALSPNVPAQIFMGLMVNPLKPGDISYE-QFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 303 -~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~ 376 (463)
. ....+++.+.|.++..++.. ..+. .+.++.++++++++++++.+.+.|++++ |+.+..|++++|+|++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 353 (397)
T 3fsl_A 279 TVRRNYSSPPNFGAQVVAAVLND-----EALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTG 353 (397)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECC
T ss_pred HHHhccCCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecC
Confidence 1 23455688999999888853 2221 1345567789999999999999999864 7888888999999954
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
++ .+.+..+++++||.+.||. ||+++ .+++++++++++|+++
T Consensus 354 ~~-----------------~~~~~~~l~~~gi~v~~g~-----------Ris~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 354 LS-----------------AAQVDRLREEFGVYLIASG-----------RMCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp CC-----------------HHHHHHHHHTTCEECCTTC-----------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred CC-----------------HHHHHHHHHhCCEEECCCC-----------eEEEEecCHhhHHHHHHHHHhh
Confidence 42 2335677889999999863 99999 4889999999999875
No 44
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.1e-41 Score=345.64 Aligned_cols=366 Identities=15% Similarity=0.134 Sum_probs=266.8
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCc---CCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPH---ALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
..++++...+.+ +...+.++..++. +|+|+.|.|+ + |. |+.++
T Consensus 9 ~~~~~l~~~~~~----~~~~~~~l~~~~~-~i~l~~g~~~~~~~------------------------~~-----~~~~~ 54 (422)
T 3d6k_A 9 YDAARLAQVREE----VTAKYAELKAKNL-SLDLTRGKPSAEQL------------------------DL-----SNDLL 54 (422)
T ss_dssp ---------CHH----HHHHHHHHHHTTC-CEECCCCSCCHHHH------------------------HT-----TGGGG
T ss_pred CCHHHHHhhHHH----HHHHHHHHhccCC-eEeCCCCCCChhhC------------------------CC-----cHHHH
Confidence 344444444444 3344555665543 8999999997 3 22 44566
Q ss_pred HHHHHHh-hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHH--HHHHHHHhcCC---------
Q 041151 87 ARAKHYL-SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGV--MQTLNCVIRGE--------- 154 (463)
Q Consensus 87 ~a~~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~~~~l~~~~--------- 154 (463)
+++.+.+ ........+|+++.|.++||+++|+|++ +++++|++|+|+++++ ..++.++. ++
T Consensus 55 ~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~ 127 (422)
T 3d6k_A 55 SLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWS 127 (422)
T ss_dssp GCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------CCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGG
T ss_pred HHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------CChhHEEEecchHHHHHHHHHHHHhc-Ccccccccccc
Confidence 6555442 1111135689999999999999999995 7889999999999997 67778886 55
Q ss_pred ---CCEEEEc-------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHH
Q 041151 155 ---GDGVVLL-------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANL 214 (463)
Q Consensus 155 ---gd~Vlvp-------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l 214 (463)
+|+|+++ .|+++ +.+..++|+ +.|++.+++. ++++|+ +++||||||.+++.+++
T Consensus 128 ~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~-~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l 201 (422)
T 3d6k_A 128 AEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDM-GVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTC 201 (422)
T ss_dssp GSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECH-HHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCH-HHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHH
Confidence 3478886 56666 322345999 9999998742 689988 57999999999999999
Q ss_pred HHHHHHhh-hCCeEEEecccccccccC-CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 215 REILRFCY-QENLVLLGDEVYQQNIYQ-DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 215 ~~l~~~a~-~~~~~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
++|+++|+ ++|++||+||+|..+.|. ++.+..++..+.... +..+++|+++||||+ ++||+|+||++ ++
T Consensus 202 ~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~--~~~GlriG~~~---~~ 272 (422)
T 3d6k_A 202 RELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA----GNPNRFWFMSSTSKI--THAGSGVSFFA---SS 272 (422)
T ss_dssp HHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT----TCTTCEEEEEESTTT--SCTTSSCEEEE---CC
T ss_pred HHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc----CCCCcEEEEcChhhh--cCcccceEEEE---eC
Confidence 99999999 999999999999863332 222344554432222 334589999999997 45899999999 58
Q ss_pred hhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccC
Q 041151 293 PKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVVCNFT 367 (463)
Q Consensus 293 ~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~~~~~ 367 (463)
+++++.+.+... ..++++.+.|.++..+|+.. + .+.++.+++++.|+++++.+.+.|.+ ++++.+..|
T Consensus 273 ~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 345 (422)
T 3d6k_A 273 KENIEWYASHANVRGIGPNKLNQLAHAQFFGDV----A---GLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP 345 (422)
T ss_dssp HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc----c---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC
Confidence 999999988775 56789999999999998630 2 23445566788888888888887765 334677788
Q ss_pred CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCCCC--CCCcEEEEEec-CCcCcHHHHHHHH
Q 041151 368 EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFGQK--EGIFHLRTTIL-PAEEDMPAIMESF 443 (463)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~~--~~~~~lRis~~-~~~e~i~~~~~~l 443 (463)
++++|+|++++ .. +.+.+..++.++||.++| |..|+.. .+.+++|||++ .+++++++++++|
T Consensus 346 ~~g~~~~~~~~--~~------------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l 411 (422)
T 3d6k_A 346 TGGYFISVDVV--PG------------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411 (422)
T ss_dssp SBSSCEEEEES--TT------------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHH
T ss_pred CcceEEEEECC--CC------------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 99999997664 11 233456678899999999 5556421 23569999999 7999999999999
Q ss_pred HHHHHHHHH
Q 041151 444 KKFNDEFME 452 (463)
Q Consensus 444 ~~~l~~~~~ 452 (463)
+++++++.+
T Consensus 412 ~~~l~~~~~ 420 (422)
T 3d6k_A 412 ATCVLMAAL 420 (422)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987754
No 45
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=2e-41 Score=343.59 Aligned_cols=339 Identities=12% Similarity=0.161 Sum_probs=277.5
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
++++|||+.|++++ +. |+.+++++.+.+.. ....|++.. .++++++
T Consensus 60 g~~~i~~~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~~--~~l~~~l 105 (421)
T 3l8a_A 60 NPELLQMWVADMDF------------------------LP-----VPEIKEAIINYGRE---HIFGYNYFN--DDLYQAV 105 (421)
T ss_dssp CTTCEECCSSCCCS------------------------CC-----CHHHHHHHHHHHHH---CCSSCBCCC--HHHHHHH
T ss_pred CCCeeecccCCCCC------------------------CC-----CHHHHHHHHHHHhc---CCcCCCCCC--HHHHHHH
Confidence 77899999998886 44 89999999988876 346777643 8999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c----CCCcccChH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K----RQQIGVLII 176 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~----~~~~~~d~~ 176 (463)
++++.+.+|+++++++|++|+|+++++..++++++ ++||+|+++ .|.++ + ...+.+|+
T Consensus 106 ~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~-~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~- 183 (421)
T 3l8a_A 106 IDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS-EKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDF- 183 (421)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCH-
T ss_pred HHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCH-
Confidence 99999999998899999999999999999999997 899999996 55554 2 33466899
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++++++. ++++|++++|+||||.+++.+++++|+++|++||++||+||+|.++.++ +....++..+.+++
T Consensus 184 ~~le~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~- 256 (421)
T 3l8a_A 184 EQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALF-GNTHHSLNTLDASY- 256 (421)
T ss_dssp HHHHHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT-TCCCCCGGGSCTTG-
T ss_pred HHHHHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCccHHHcCchh-
Confidence 9999999842 7999999999999999999999999999999999999999999998883 44444554432221
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQF 334 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 334 (463)
.++++++.|+||++ |++|+|+||+++ .++++++.+..... ...+++.+.+.++.++++ ..
T Consensus 257 -----~~~~i~~~s~sK~~-g~~G~~~G~~~~--~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~----------~~ 318 (421)
T 3l8a_A 257 -----KDFTIILSSATKTF-NIAGTKNSFAII--QNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQ----------YG 318 (421)
T ss_dssp -----GGTEEEEECSHHHH-TCGGGCCEEEEC--CSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH----------HC
T ss_pred -----cCcEEEEEeChhhc-cCchhheEeEEc--CCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHh----------cc
Confidence 35789999999999 899999999995 23889998887763 344788899998888864 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 335 VRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
..+++++++.++++++++.+.|++.|++.+..+++++++|++++.+ + .+..+++..+++++||.+.||+
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~-~----------~~~~~l~~~l~~~~gi~v~~g~ 387 (421)
T 3l8a_A 319 KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAY-A----------IAQPQLSEKLQNEAKVVLNDGA 387 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGG-T----------CCTTHHHHHHHHTTCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEecccc-C----------CCHHHHHHHHHHhCCEEEECch
Confidence 3446678888999999999999887899999999999999766421 1 1244566666677899999999
Q ss_pred CCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.|+. .+.+++||+++.+++++++++++|+++++
T Consensus 388 ~f~~-~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 388 HFGK-EGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp GGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred hhCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9986 35679999999889999999999998764
No 46
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=3.2e-41 Score=337.32 Aligned_cols=350 Identities=20% Similarity=0.320 Sum_probs=278.0
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.++.+...+.+ .++|||+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 48 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSN------------------------PP-----PPFLLEAVR 48 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhhhhhcCccHHHHHHHHHhc-----CCeEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 6788888888887766554432 4589999999875 33 888999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+++.. ...|++..|..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 49 ~~~~~----~~~y~~~~~~~~l~~~la~~~~------~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~ 117 (381)
T 1v2d_A 49 RALGR----QDQYAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLV-GPGDEVVVLEPFFDVYLP 117 (381)
T ss_dssp HHTTT----SCSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHH
T ss_pred HHHHH----hcCCCCCCCCHHHHHHHHHhcC------CChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHH
Confidence 88764 3479888899999999999976 678899999999999999999997 899999997
Q ss_pred ----cCcee---cC----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 ----FHTTW---KR----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 ----~g~~~---~~----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +. .++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|+++|++||+
T Consensus 118 ~~~~~g~~~~~v~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 190 (381)
T 1v2d_A 118 DAFLAGAKARLVRLDLTPEGFRLDL-SALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLIS 190 (381)
T ss_dssp HHHHTTCEEEEEECEEETTEEECCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCEEEEEeCCCCCccCCcCH-HHHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 45555 22 4578999 999998875 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|..+.+ + ....++..+ . . ++++++.|+||++ |++|+|+||++ +++++++.+..... ..+++
T Consensus 191 De~~~~~~~-g-~~~~~~~~~---~----~--~~~~~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~ 255 (381)
T 1v2d_A 191 DEVYDELYY-G-ERPRRLREF---A----P--ERTFTVGSAGKRL-EATGYRVGWIV---GPKEFMPRLAGMRQWTSFSA 255 (381)
T ss_dssp ECTTTTCBS-S-SCCCCHHHH---C----T--TTEEEEEEHHHHT-TCGGGCCEEEE---CCTTTHHHHHHHHHHHTSSC
T ss_pred EcCcccccc-C-CCCCCHHHh---c----C--CCEEEEeechhhc-CCcccceEEEE---eCHHHHHHHHHHHhhcccCC
Confidence 999999876 2 233455443 1 1 3679999999999 89999999999 58889998877664 56788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..+|+. . .+.++.++++++++++++++.+.|++. |+.+..+++++|+|++++ ..
T Consensus 256 ~~~~~~a~~~~l~~-------~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~------- 317 (381)
T 1v2d_A 256 PTPLQAGVAEALKL-------A-RREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--GW------- 317 (381)
T ss_dssp CHHHHHHHHHHHHH-------H-HHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECT--TC-------
T ss_pred CcHHHHHHHHHHhC-------c-ccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecC--hH-------
Confidence 89999988888741 0 012345668889999999999999986 899888888999996553 10
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+ +..+++++||.+.||..|+.. .+.+++||+++.+++++++++++|++++++.++.
T Consensus 318 -----~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~r~~ 374 (381)
T 1v2d_A 318 -----D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPREA 374 (381)
T ss_dssp -----C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC------
T ss_pred -----h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhcccc
Confidence 2 556788999999999988752 2356899999988899999999999998776553
No 47
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=4.1e-41 Score=341.97 Aligned_cols=356 Identities=15% Similarity=0.137 Sum_probs=268.5
Q ss_pred HHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH--HHHhhhcCCCCCccCC
Q 041151 28 LRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA--KHYLSLTSGGLGAYSD 105 (463)
Q Consensus 28 ~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~--~~~~~~~~~~~~~Y~~ 105 (463)
+.+.++... ..+|||+.|.|+. ..+ |. ++.+.+++ .+++........+|++
T Consensus 24 ~~~~~~~~~-~~~i~~~~G~p~~-------------------~~~--p~-----~~~~~~~~~~~~~~~~~~~~~~~Y~~ 76 (427)
T 3ppl_A 24 RKFDELKSK-NLKLDLTRGKPSS-------------------EQL--DF-----ADELLALPGKGDFKAADGTDVRNYGG 76 (427)
T ss_dssp HHHHHHHHT-CCCEECCCCSCCH-------------------HHH--HT-----TGGGGGCSCTTCCBCTTSCBTTSSCC
T ss_pred HHHHHhhcC-CceEecCCCCCCh-------------------HHC--CC-----cHHHHHHhhhHHHhhccchhhcCCCC
Confidence 334444433 3579999999984 000 00 12344443 3334332234689999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHH--HHHHHHHhcC--C----------CCEEEEc----------
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGV--MQTLNCVIRG--E----------GDGVVLL---------- 161 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~~~~l~~~--~----------gd~Vlvp---------- 161 (463)
..|.++||++||++++ +++++|++|+|+++++ ..++.+++ + | ||+|+++
T Consensus 77 ~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~ 149 (427)
T 3ppl_A 77 LDGIVDIRQIWADLLG------VPVEQVLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPGYDRHFSI 149 (427)
T ss_dssp SSCCHHHHHHHHHHHT------SCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHH
T ss_pred CCCcHHHHHHHHHHhC------CCcceEEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCCcHHHHHH
Confidence 9999999999999995 7889999999999999 58888887 6 6 8999997
Q ss_pred ---cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHh-hhCCeEEEeccc
Q 041151 162 ---FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFC-YQENLVLLGDEV 233 (463)
Q Consensus 162 ---~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a-~~~~~~vi~Dea 233 (463)
.|.++ +.+..++|+ +.|+++++.. ++++|+++ +||||||.+++.+++++|+++| +++|++||+||+
T Consensus 150 ~~~~g~~~~~v~~~~~g~d~-~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~ 223 (427)
T 3ppl_A 150 TERFGFEMISVPMNEDGPDM-DAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNA 223 (427)
T ss_dssp HHHTTCEEEEEEEETTEECH-HHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred HHHcCCEEEEeCCCCCCCCH-HHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECC
Confidence 66665 333346999 9999998521 79999877 8899999999999999999999 999999999999
Q ss_pred ccccccCCCC-CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 234 YQQNIYQDER-PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 234 y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
|..+.|++.. ++.++..+.... +..+++|+++||||+. ++|+|+||++ +++++++.+.+... ..++++.
T Consensus 224 y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~--~~G~r~G~~~---~~~~l~~~~~~~~~~~~~~~~~ 294 (427)
T 3ppl_A 224 YAVHTLTDEFPEVIDIVGLGEAA----GNPNRFWAFTSTSKIT--LAGAGVSFFL---TSAENRKWYTGHAGIRGIGPNK 294 (427)
T ss_dssp TTTCBSSSCCCCCCCHHHHHHHT----TCTTSEEEEEESTTTS--CTTSSCEEEE---CCHHHHHHHHHHHHHHCSCCCH
T ss_pred CcccccCCCCCCccchhhhhhcc----CCCCcEEEEechhhcc--CcCccEEEEE---cCHHHHHHHHHHhhcccCCCCH
Confidence 9998774322 234565543222 2345899999999974 5899999999 68999999988875 6788999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCceeEEeeeccCChhhHHHH
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+.|.++..++++ ...+.++.++.++.|+++++.+.+.|.+ ++++.+..|++++|+|++++ ..
T Consensus 295 ~~q~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~--~~----- 360 (427)
T 3ppl_A 295 VNQLAHARYFGD-------AEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVV--PG----- 360 (427)
T ss_dssp HHHHHHHHHHCS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECS--TT-----
T ss_pred HHHHHHHHHHhC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECC--cc-----
Confidence 999999999863 1123445566788888888888887754 33577888999999996654 21
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeC-CCCCCC--CCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVP-GSGFGQ--KEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~--~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+..+ +...|.++||.++| |..|+. ..+.+++|||++ .+++++++++++|++++++...+
T Consensus 361 ------~~~~-~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~~~ 423 (427)
T 3ppl_A 361 ------TASR-VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAAAE 423 (427)
T ss_dssp ------CHHH-HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHH-HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334 45667889999999 555543 135679999999 58899999999999999887543
No 48
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=4.6e-41 Score=338.51 Aligned_cols=362 Identities=12% Similarity=0.105 Sum_probs=270.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhc-ccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEG-KKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
++..++...+++.+..+. .++..++ .++|+|+.|.| +..+. | .+.+.+.+
T Consensus 2 ~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~i~l~~g~~~d~~~~---------------------~----~~~~~v~~ 53 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVT---EAFKRDTNSKKMNLGVGAYRDDNGK---------------------P----YVLNCVRK 53 (401)
T ss_dssp CSSTTCCCCCCCHHHHHH---HHHHHCCCTTCEECCCCSCCCTTSC---------------------C----CCCHHHHH
T ss_pred ChhhcCCCCCCChhHHHH---HHHhhCCCCCceeeeeeeEECCCCC---------------------E----echHHHHH
Confidence 344555566666555444 4444444 34899999998 64111 1 11456777
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHHHHh--cCCCCEEEEc--
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLNCVI--RGEGDGVVLL-- 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~--~~~gd~Vlvp-- 161 (463)
++.+.... ....+|++..|.+++|+++++++.+.+|..+++++|++ |+|+++++..++.++. .+|||+|+++
T Consensus 54 a~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p 131 (401)
T 7aat_A 54 AEAMIAAK--KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKP 131 (401)
T ss_dssp HHHHHHHT--TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHhccc--ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 77666553 24578999999999999999999888888788999987 9999999998887652 1789999996
Q ss_pred -----------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -----------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -----------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|.++ + ...+++|+ +.+++.+++. .+++++|++++||||||.+++.+++++|+++|++|
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~ 207 (401)
T 7aat_A 132 SWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF-TGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR 207 (401)
T ss_dssp CCTTHHHHHHHTTCEEEEEECEETTTTEECH-HHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHcCCeeEeeeeeccccCccCH-HHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 56665 2 23689999 9888887641 12689999999999999999999999999999999
Q ss_pred CeEEEecccccccccCCCC--CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----HHHH
Q 041151 225 NLVLLGDEVYQQNIYQDER--PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----TVDE 298 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~ 298 (463)
|++||+||+|..+.++ +. ...++..+. +...++|+++||||+| |++|+|+||++++.++++ +++.
T Consensus 208 ~~~li~Deay~~~~~~-~~~~~~~~~~~~~-------~~~~~~i~~~S~sK~~-~~~G~RiG~l~~~~~~~~~~~~~~~~ 278 (401)
T 7aat_A 208 NLLAYFDMAYQGFASG-DINRDAWALRHFI-------EQGIDVVLSQSYAKNM-GLYGERAGAFTVICRDAEEAKRVESQ 278 (401)
T ss_dssp TCEEEEEESCTTTTTS-CHHHHTHHHHHHH-------HTTCCCEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHH
T ss_pred CcEEEEccccccccCC-CccccHHHHHHHH-------hcCCcEEEEecCCccc-ccccCceEEEEEEeCCHHHHHHHHHH
Confidence 9999999999998773 22 122333221 1234789999999999 999999999985444666 4455
Q ss_pred HHhhhh-hcccCChHHHHHHHHhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCceeEE
Q 041151 299 IYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISY-EQFVRESKGILESLRRRARMMTDGFNSC---RNVVCNFTEGAMYS 373 (463)
Q Consensus 299 l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~ 373 (463)
+..... ...+++...|.++..++++ +.+ ..+.++.++++++++++++.+.+.|+++ +++.+..|++++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~ 353 (401)
T 7aat_A 279 LKILIRPMYSNPPMNGARIASLILNT-----PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFC 353 (401)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEE
T ss_pred HHHHHHhccCCCChHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEE
Confidence 555543 4567778888888877752 222 2235567788999999999999999886 24788889999999
Q ss_pred eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 374 FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
|++++ .+.+..+++++||.+.|+ +|||++ .+.+++++++++|++++
T Consensus 354 ~~~~~-----------------~~~~~~ll~~~gi~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 354 FTGLK-----------------PEQVERLTKEFSIYMTKD-----------GRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp ECCCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred ecCCC-----------------HHHHHHHHHhCCEeccCC-----------CeEEeccCChhhHHHHHHHHHHHh
Confidence 95432 234567788999999763 699999 67788999999998875
No 49
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=6.8e-40 Score=333.01 Aligned_cols=328 Identities=20% Similarity=0.349 Sum_probs=254.4
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCC--CCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cC
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYP--SDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FH 163 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~--~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g 163 (463)
...|+++.|..+||+++++++++.+|.. +++++|++|+|+++++..++.+++ ++||.|+++ .|
T Consensus 76 ~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~~g 154 (428)
T 1iay_A 76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC-CCCCeEEEccCCCcchHHHHHHhcC
Confidence 4689988899999999999999888876 778999999999999999999997 899999997 34
Q ss_pred cee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 164 TTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 164 ~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.++ +. +++.+|+ +.|++++++....++++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+
T Consensus 155 ~~~~~v~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 233 (428)
T 1iay_A 155 VQLIPIHCESSNNFKITS-KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CEEEEECCCTTTTTCCCH-HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CEEEEeecCCccCCcCCH-HHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence 444 22 4568899 9999999864333447999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFM 317 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 317 (463)
.|+ +....++..+..+...+....+++|++.|+||+| |++|+|+||+++ .++++++.+.+... .++++.+.|.++
T Consensus 234 ~~~-~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Glr~G~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~a~ 308 (428)
T 1iay_A 234 VFD-TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSS-FGLVSTQTQYFL 308 (428)
T ss_dssp CCS-SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHT-TSCCCHHHHHHH
T ss_pred ccC-CCCccCHHHhccccccccCCCCcEEEEecchhhc-CCCCceEEEEEe--CCHHHHHHHHHHHh-cccCCHHHHHHH
Confidence 773 3344455554321000000135789999999999 899999999995 36788888877655 467899999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHH
Q 041151 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVF 397 (463)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (463)
..+++. .. ...++.+++++.++++++.+.+.|+++ |+.+..+++++|+|++++ .... .....+..+
T Consensus 309 ~~~l~~-----~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~~~----~~~~~~~~~ 374 (428)
T 1iay_A 309 AAMLSD-----EK--FVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLR--PLLR----ESTFDSEMS 374 (428)
T ss_dssp HHHTTC-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECG--GGCS----SSSHHHHHH
T ss_pred HHHhcC-----hH--HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEech--hhcC----CCchhHHHH
Confidence 999863 11 022345568889999999999999998 888888878999996653 2100 000001234
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 398 YCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 398 ~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
+...+++++||.+.||..|+.. +.+++||+++ .+++++++++++|++++++
T Consensus 375 l~~~l~~~~gi~v~~~~~~~~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 375 LWRVIINDVKLNVSPGSSFECQ-EPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHTSCEECEEGGGGTCS-SSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEeCchhhCCC-CCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 5555555569999999988753 3468999999 8899999999999988754
No 50
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.2e-40 Score=333.73 Aligned_cols=336 Identities=13% Similarity=0.177 Sum_probs=271.6
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
+.++|+|+.|+|+. +. |+.+.+++.+.+.+ ....|++ +..++++++
T Consensus 31 ~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~--~~~~~~~~l 76 (391)
T 4dq6_A 31 TNDLLPMWVADMDF------------------------KA-----APCIIDSLKNRLEQ---EIYGYTT--RPDSYNESI 76 (391)
T ss_dssp CSCSEECCSSSCSS------------------------CC-----CHHHHHHHHHHHTT---CCCCCBC--CCHHHHHHH
T ss_pred CCCceeccccCCCC------------------------CC-----CHHHHHHHHHHHhC---CCCCCCC--CCHHHHHHH
Confidence 46799999998885 44 89999999988875 3456765 568999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC-----CCcccCh
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR-----QQIGVLI 175 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~-----~~~~~d~ 175 (463)
++++.+.+|.++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. ..+.+|+
T Consensus 77 ~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~ 155 (391)
T 4dq6_A 77 VNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT-KANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDY 155 (391)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCH
T ss_pred HHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeH
Confidence 99999999988899999999999999999999997 899999997 56655 22 2355899
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhc
Q 041151 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255 (463)
Q Consensus 176 ~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+.|++++++ +++|++++|+||||.+++.+++++|+++|++||+++|+||+|..+.++ +....++..+.++.
T Consensus 156 -~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~ 226 (391)
T 4dq6_A 156 -EDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK-KHKHIPMASISKEF 226 (391)
T ss_dssp -HHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT-TCCCCCGGGSCHHH
T ss_pred -HHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccC-CCCccCHHHcCccc
Confidence 999998763 899999999999999999999999999999999999999999998873 44444544432211
Q ss_pred CCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 256 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
.++++++.|+||.+ |++|+|+||+++ .++++++.+..... ...+++.+.|.++..++..
T Consensus 227 ------~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------- 287 (391)
T 4dq6_A 227 ------EKNTITCMAPTKTF-NIAGLQSSYVVL--PDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN---------- 287 (391)
T ss_dssp ------HHTEEEEECSHHHH-TCGGGCCEEEEC--CSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH----------
T ss_pred ------cCcEEEEEechhhc-cCcccceEEEEe--CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----------
Confidence 24789999999999 899999999995 33588888887754 2447788899888887641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
...+.++.+++++++++.+.+.|++ +||+.+..+++++++|++++.. + .+..++...+++++||.++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~gi~v~~ 356 (391)
T 4dq6_A 288 GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSAL-G----------LSDEELESILVQKGKVALNQ 356 (391)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGG-C----------CCHHHHHHHHHHTTCEECEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhc-C----------CCHHHHHHHHHHhCCEEeeC
Confidence 1234566788899999999999988 7899999999999999665421 1 12455555555555999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
|+.|+.. +.+++||+++.+++++++++++|++++
T Consensus 357 g~~~~~~-~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 357 GNSFGIG-GSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp GGGGCTT-CTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred chhhCCC-CCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 9999863 567999999988899999999998876
No 51
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.4e-40 Score=333.71 Aligned_cols=337 Identities=15% Similarity=0.180 Sum_probs=266.1
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHH-HHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPG-VRKEV 116 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~-lr~~i 116 (463)
+++|||+.|+++. +. |+.+.+++.+.+.. ....|++. ..+ +|+++
T Consensus 28 ~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~~lr~~l 73 (390)
T 1d2f_A 28 ADLLPFTISDMDF------------------------AT-----APCIIEALNQRLMH---GVFGYSRW--KNDEFLAAI 73 (390)
T ss_dssp --CEECCSSSCSS------------------------CC-----CHHHHHHHHHHHTT---CCCCCCCS--CCHHHHHHH
T ss_pred CCeeEeeecCCCC------------------------CC-----CHHHHHHHHHHHhC---CCCCCCCC--ChHHHHHHH
Confidence 3689999998774 33 88999999888764 34678775 678 99999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC----CCcccChH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR----QQIGVLII 176 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~----~~~~~d~~ 176 (463)
++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. ..|.+|+
T Consensus 74 a~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~- 151 (390)
T 1d2f_A 74 AHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDM- 151 (390)
T ss_dssp HHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCH-
T ss_pred HHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCH-
Confidence 99999888988889999999999999999999997 899999997 56655 21 1456899
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++++++. ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ +..+.++..+
T Consensus 152 ~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~----- 220 (390)
T 1d2f_A 152 GKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG-EQPHIPWSNV----- 220 (390)
T ss_dssp HHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS-SSCCCCGGGT-----
T ss_pred HHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCcCHHHc-----
Confidence 9999998742 6899999999999999999999999999999999999999999998873 3444454433
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hc-ccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IA-LSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
+....-+ +.|+||++ |++|+|+||+++ .++++++.+..... .. .+++.+.|.++.++++.
T Consensus 221 ---~~~~~d~-~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------- 283 (390)
T 1d2f_A 221 ---ARGDWAL-LTSGSKSF-NIPALTGAYGII--ENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---------- 283 (390)
T ss_dssp ---CCSSEEE-EECSHHHH-TCGGGCCEEEEE--CSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH----------
T ss_pred ---chhhHhh-ccCccHhh-cccChhheEEEE--CCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc----------
Confidence 2210113 89999999 899999999995 35788888876543 23 37788888888777631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
...+.++.++.++++++.+.+.|++ +||+.+..+++++++|++++ .. + .+..++...+++++||.+.|
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~--------~-~~~~~l~~~l~~~~gi~v~~ 352 (390)
T 1d2f_A 284 GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLR--PL--------N-IDDNALQKALIEQEKVAIMP 352 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECG--GG--------C-CCHHHHHHHHHHTTCEECEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEcc--cc--------C-CCHHHHHHHHHHHcCEEeeC
Confidence 1234566788899999999999998 78999888999999996653 21 0 12445555555578999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|..|+. .+.+++||+++.+++++++++++|+++++++
T Consensus 353 g~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 353 GYTYGE-EGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp GGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 999874 2446899999977889999999999888654
No 52
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=2e-40 Score=334.00 Aligned_cols=370 Identities=13% Similarity=0.098 Sum_probs=270.3
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
...++++.+++.++...|....++++++..+.|||++|.. +..|.. |. .+.+.+
T Consensus 15 m~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~--------------------~v-----l~~Vk~ 69 (420)
T 4h51_A 15 MTTAERWQKIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRP--------------------YP-----LRVVRK 69 (420)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCB--------------------CC-----CHHHHH
T ss_pred hhhhHHHhCCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCC--------------------CC-----CHHHHH
Confidence 4567888888877777888878888888777999999942 221211 22 577887
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHh---cCCCCEEEEc-
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVI---RGEGDGVVLL- 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~---~~~gd~Vlvp- 161 (463)
+....+.. ...+.|.|..|+++||+++++++. |.....+ ..+.|.|++.++..++..+. .+|||+|++|
T Consensus 70 A~~~~~~~--~~~~~Y~p~~G~p~lr~aia~~~~---g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~ 144 (420)
T 4h51_A 70 AEQLLLDM--NLDYEYLPISGYQPFIDEAVKIIY---GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSD 144 (420)
T ss_dssp HHHHHHHT--TCCCCCCCTTCCHHHHHHHHHHHH---C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEE
T ss_pred HHHHHhcC--CCCCCCCCcCChHHHHHHHHHHhc---CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 77766655 245679999999999999999974 3223334 34458888888877766654 1699999997
Q ss_pred ------------cCcee-------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ------------FHTTW-------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ------------~g~~~-------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|++. ....+++|+ +.+.+.+... .+++++|++++||||||.+++.+++++|+++|+
T Consensus 145 P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~-~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~ 220 (420)
T 4h51_A 145 PTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNF-EGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLML 220 (420)
T ss_dssp SCCTHHHHHHHHTTCCCEEEEECEEGGGTEECH-HHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHcCCeEEEeeccccccccCCCH-HHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 66542 456678899 9998888753 225677777899999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccch-HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH-
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSS-KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY- 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~- 300 (463)
++++++|+||+|.++.|+ +....+. ..... +...++|++.||||.| +++|+|+||++++....+...++.
T Consensus 221 ~~~~~~~~D~~Y~~~~~~-~~~~~~~~~~~~~------~~~~~~i~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~ 292 (420)
T 4h51_A 221 AKHHQVFFDSAYQGYASG-SLDTDAYAARLFA------RRGIEVLLAQSFSKNM-GLYSERAGTLSLLLKDKTKRADVKS 292 (420)
T ss_dssp HHTCEEEEEESCTTTTTS-CHHHHTHHHHHHH------HTTCCCEEEEECTTTS-CCGGGCEEEEEEECSCHHHHHHHHH
T ss_pred hcCceEeeehhhhhhccC-CcccchHHHHhHH------hhCceEEEEecccccc-ccccCceEEEEecccCHHHHHHHHH
Confidence 999999999999999873 2221121 11112 2334789999999999 999999999986433333333322
Q ss_pred ---hhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC-cccccCCceeEE
Q 041151 301 ---KIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RN-VVCNFTEGAMYS 373 (463)
Q Consensus 301 ---~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg-~~~~~~~g~~~~ 373 (463)
.... ...+++...|.++..++.++ .....+.++.+.++++|+++|+.|.+.|++. ++ |.++.+++|+|.
T Consensus 293 ~l~~~~r~~~s~~p~~~a~~~~~~l~d~----~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~ 368 (420)
T 4h51_A 293 VMDSLIREEYTCPPAHGARLAHLILSNN----ELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFS 368 (420)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEE
T ss_pred HHHHhhhcccCcchHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEE
Confidence 2222 45778889999999888632 3455567778889999999999999999886 22 666778899999
Q ss_pred eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 041151 374 FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
|..+. . +.+ ++|+++||++.|++ |||++ .++++++.+.++|++++++..+
T Consensus 369 ~~gls----------------~-e~v-~~L~e~~Vy~~~~g-----------Ris~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 369 FLGLS----------------K-AQC-EYCQNHNIFITVSG-----------RANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp ECCCC----------------H-HHH-HHHHHTTEECCTTC-----------EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred ecCcC----------------H-HHH-HHHHhCCEEEcCCC-----------EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 94332 2 223 46789999998742 99999 7899999999999999988766
Q ss_pred H
Q 041151 453 Q 453 (463)
Q Consensus 453 ~ 453 (463)
|
T Consensus 420 e 420 (420)
T 4h51_A 420 E 420 (420)
T ss_dssp -
T ss_pred C
Confidence 4
No 53
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=8e-40 Score=333.24 Aligned_cols=327 Identities=18% Similarity=0.309 Sum_probs=257.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcC--CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCc
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHT 164 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~ 164 (463)
.+|++..|..+||+++++++++.++ +++++++|++|+|+++++..++.+++ ++||.|+++ .|.
T Consensus 80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~ 158 (435)
T 3piu_A 80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGV 158 (435)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc-CCCCeEEECCCccccHHHHHHHhcCC
Confidence 5799999999999999999986554 56788999999999999999999997 899999997 344
Q ss_pred ee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccc
Q 041151 165 TW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 165 ~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
++ + ..++.+|+ +.|++++++....+.++++|++++||||||.+++.+++++|+++|++||++||+||+|..+.
T Consensus 159 ~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 237 (435)
T 3piu_A 159 EIVPIHCTSSNGFQITE-TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA 237 (435)
T ss_dssp EEEEEECCGGGTSCCCH-HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred EEEEeeCCCccCCcCCH-HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 44 2 23467899 99999998765555579999999999999999999999999999999999999999999988
Q ss_pred cCCCCCccchHHHHHhcCCCCCC----CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHH
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSK----EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQ 314 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q 314 (463)
|+ +....++..+.++.+. +. .+++++++||||+| |++|+|+||+++ .++++++.+.+... .+.++.+.|
T Consensus 238 ~~-~~~~~~~~~~~~~~~~--d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~-~~~~~~~~~ 310 (435)
T 3piu_A 238 FS-SPSFISVMEVLKDRNC--DENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMSS-FGLVSSQTQ 310 (435)
T ss_dssp CS-SSCCCCHHHHHHC---------CGGGGEEEEEESSSSS-CCGGGCEEEEEE--SCHHHHHHHHHHGG-GSCCCHHHH
T ss_pred cC-CCCCcCHHHhcccccc--ccccCCCCCEEEEEeeeccc-CCCceeEEEEEe--CCHHHHHHHHHHhh-cCCCCHHHH
Confidence 83 4455566655432100 10 35789999999999 899999999995 36777787776655 566789999
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC
Q 041151 315 IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP 394 (463)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (463)
.++.+++... .+ ..++.++.+++++++++.+.+.|++. |+.+..+++++|+|++++-.... ....+
T Consensus 311 ~~~~~~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~------~~~~~ 376 (435)
T 3piu_A 311 HLLSAMLSDK-----KL--TKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRS------NTFEA 376 (435)
T ss_dssp HHHHHHHHCH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSS------SSHHH
T ss_pred HHHHHHhcCh-----HH--HHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEccccccc------CCchh
Confidence 9998887521 11 12345567889999999999999998 89988999999999766411000 00001
Q ss_pred hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecC-CcCcHHHHHHHHHHHHHHHH
Q 041151 395 DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILP-AEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 395 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~-~~e~i~~~~~~l~~~l~~~~ 451 (463)
..+++..+++++||.+.||..|+. .+.+++||+++. +++++++++++|+++++++.
T Consensus 377 ~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 377 EMELWKKIVYEVHLNISPGSSCHC-TEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHTSCEECEEGGGGTC-SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCEEEeCCcccCC-CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 345666666777999999999876 356699999994 89999999999999987653
No 54
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=5.3e-41 Score=340.58 Aligned_cols=367 Identities=13% Similarity=0.143 Sum_probs=274.4
Q ss_pred hhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH--H
Q 041151 14 NVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK--H 91 (463)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~--~ 91 (463)
++..++++.+.++... .+. ..+|||+.|.|+. ..+ |. |+.+.+++. +
T Consensus 6 ~~~~~~~~~~~~~~~~----~~~-~~~i~l~~g~p~~-------------------~~~--~~-----~~~v~~a~~~~~ 54 (423)
T 3ez1_A 6 ASRPALDLARQAYEAF----KAR-GLNLNMQRGQPAD-------------------ADF--DL-----SNGLLTVLGAED 54 (423)
T ss_dssp CCHHHHHHHHHHHHHH----HHH-TCCEESCCCCCCH-------------------HHH--HT-----TGGGGGSCCGGG
T ss_pred HHHHHHHHHHHHHHHh----hcC-CceEecCCCCCCh-------------------HhC--CC-----cHHHHHHHhhhH
Confidence 4555666655554433 222 3579999999992 000 22 556666664 4
Q ss_pred HhhhcCCCCCcc-CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHH--HHHHHHhcC--C---------CCE
Q 041151 92 YLSLTSGGLGAY-SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVM--QTLNCVIRG--E---------GDG 157 (463)
Q Consensus 92 ~~~~~~~~~~~Y-~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~--~~~~~l~~~--~---------gd~ 157 (463)
.+. .......| ++..|.++||+++|++++ +++++|++|+|+++++. .++.+++ + | ||+
T Consensus 55 ~~~-~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~ 126 (423)
T 3ez1_A 55 VRM-DGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPK 126 (423)
T ss_dssp CEE-TTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCE
T ss_pred Hhh-cchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCE
Confidence 433 21235789 888999999999999985 78899999999999998 8999987 7 7 599
Q ss_pred EEEc-------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHH
Q 041151 158 VVLL-------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 158 Vlvp-------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~ 220 (463)
|+++ .|.++ +.+..++|+ +.|+++++. .+++++|+++ +||||||.+++.+++++|+++
T Consensus 127 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~-~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~ 201 (423)
T 3ez1_A 127 MIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDV-DAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGL 201 (423)
T ss_dssp EEEEESCCHHHHHHHHHHTCEEEEEEEETTEECH-HHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTC
T ss_pred EEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCH-HHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHH
Confidence 9997 56665 333346999 999999961 1179999766 899999999999999999999
Q ss_pred h-hhCCeEEEecccccccccCC-C-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 221 C-YQENLVLLGDEVYQQNIYQD-E-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 221 a-~~~~~~vi~Deay~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
| +++|++||+||+|..+.|.+ + .+..++..+.... +..+++|+++||||++ ++|+|+||++ +++++++
T Consensus 202 a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~sK~~--~~G~r~G~~~---~~~~~~~ 272 (423)
T 3ez1_A 202 QAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDA----GYPDRAFVFASTSKIT--FAGAGLGFVA---SSEDNIR 272 (423)
T ss_dssp CCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHH----TCTTSEEEEEESTTTS--CSSSSCEEEE---ECHHHHH
T ss_pred HHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhcc----CCCCeEEEEeCchhhc--cCCcceEEEE---eCHHHHH
Confidence 9 99999999999999766633 2 2344665553322 3445899999999974 4899999999 5899999
Q ss_pred HHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC-CcccccCCcee
Q 041151 298 EIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CR-NVVCNFTEGAM 371 (463)
Q Consensus 298 ~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~p-g~~~~~~~g~~ 371 (463)
.+.+... ..++++.+.|.++..++++. .+ .+.++.++.++.|+++++.+.+.|.+ ++ ++.+..|++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~ 346 (423)
T 3ez1_A 273 WLSKYLGAQSIGPNKVEQARHVKFLTEY---PG---GLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGY 346 (423)
T ss_dssp HHHHHHHHSCSCCCHHHHHHHHHHHHHS---TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSS
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHhc---cc---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccE
Confidence 9988875 56889999999999888520 01 23344556677777777777766654 43 37778889999
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCCC--CCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFGQ--KEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~--~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
|+|++++-. +.+.+..+|.++||.++| |..|+. ..+.+++||+++ .+++++++++++|++++
T Consensus 347 ~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 347 FISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACI 412 (423)
T ss_dssp CEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 999766411 234456778899999999 667753 234579999999 58999999999999999
Q ss_pred HHHHHH
Q 041151 448 DEFMEQ 453 (463)
Q Consensus 448 ~~~~~~ 453 (463)
++...+
T Consensus 413 ~~~~~~ 418 (423)
T 3ez1_A 413 RLATEE 418 (423)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 55
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=5.9e-41 Score=349.98 Aligned_cols=329 Identities=17% Similarity=0.237 Sum_probs=247.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHH-HHhcCCCC---CCCcEEEcCCcHHHHHHHHHH-----Hhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI-ERRDGYPS---DPELIFLTDGASKGVMQTLNC-----VIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~~~~g~~~---~~~~i~~t~G~~~al~~~~~~-----l~~ 152 (463)
++.+++++.+.+.. ..|+++.|..++|+++++++ .++++..+ ++++|++|+|+++++..++.+ ++
T Consensus 118 ~~~~~~al~~~~~~-----~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~- 191 (546)
T 2zy4_A 118 PAAFLHEMVDGILG-----CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLL- 191 (546)
T ss_dssp HHHHHHHHHHHHHT-----CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS-
T ss_pred ChHHHHHHHHhhhc-----CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcC-
Confidence 56677777666542 58999999999999988765 44444322 568999999999999999998 45
Q ss_pred CCCCEEEEc---------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 153 GEGDGVVLL---------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 153 ~~gd~Vlvp---------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
+|||.|+++ .|.++ .+.+|.+|+ +.|++.+.. ++++|++|+||||||.+++.
T Consensus 192 ~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~k~v~l~~p~NPtG~~~~~ 264 (546)
T 2zy4_A 192 KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPD-SELDKLKDP------AIKIFFCVNPSNPPSVKMDQ 264 (546)
T ss_dssp CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCH-HHHGGGGST------TEEEEEEESSCSSSCBCCCH
T ss_pred CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCH-HHHHHhhCC------CCeEEEEECCCCCCCccCCH
Confidence 899999997 24444 234577999 999887654 79999999999999999999
Q ss_pred HHHHHHHHHh--hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 212 ANLREILRFC--YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 212 ~~l~~l~~~a--~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+++++|+++| +++|++||+||+|.++.+ + ..++... . .+++|+++||||++ |++|+|+||++.
T Consensus 265 ~~l~~l~~~a~~~~~~~~ii~De~y~~~~~-~---~~s~~~~--------~-~~~~i~~~S~SK~~-g~~GlRiG~~~~- 329 (546)
T 2zy4_A 265 RSLERVRNIVAEHRPDLMILTDDVYGTFAD-D---FQSLFAI--------C-PENTLLVYSFSKYF-GATGWRLGVVAA- 329 (546)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEECTTGGGST-T---CCCHHHH--------C-GGGEEEEEESTTTT-TCGGGCEEEEEE-
T ss_pred HHHHHHHHHHHhccCCcEEEEeCcchhhcc-c---CcCHHHh--------C-CCCEEEEEeCcccc-CCCCcceEEEEE-
Confidence 9999999999 889999999999998765 2 3455443 2 23789999999999 899999999995
Q ss_pred CCChh-HHHHHHhhh-------------------------------------hhcccCChHHHHHH-----HHhcCCCCC
Q 041151 290 NIPPK-TVDEIYKIA-------------------------------------SIALSPNVPAQIFM-----GLMVNPLKP 326 (463)
Q Consensus 290 ~~~~~-~~~~l~~~~-------------------------------------~~~~~~~~~~q~~~-----~~~l~~~~~ 326 (463)
+++ +++.+.+.. ....+++.+.|.++ .+++++.
T Consensus 330 --~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~-- 405 (546)
T 2zy4_A 330 --HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEA-- 405 (546)
T ss_dssp --ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTT--
T ss_pred --CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhcc--
Confidence 553 777663211 11246788888874 2444421
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC------ChhhHHHHhhcCCCChHHHHH
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL------PPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 400 (463)
..+.+.+++.|+++++.+.+.|. . ++.+.+++++||+|++++. ..++..-.+. +. ++.+++.
T Consensus 406 --------~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~-~~-~~~~~l~ 473 (546)
T 2zy4_A 406 --------DEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVK-QS-STGDMLF 473 (546)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHH-HC-CHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhc-cC-CHHHHHH
Confidence 12234567789999999999996 5 5666778999999977641 0000000000 11 2456677
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHHhcc
Q 041151 401 RLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQYED 456 (463)
Q Consensus 401 ~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~~~~ 456 (463)
++++++||.+.||+.|+. +.+++||+++ .+++++++++++|++++++++++|+.
T Consensus 474 ~ll~~~gV~v~pG~~F~~--~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~~~~~ 528 (546)
T 2zy4_A 474 RIADETGIVLLPGRGFGS--NRPSGRASLANLNEYEYAAIGRALRKMADELYAEYSG 528 (546)
T ss_dssp HHHHHHSCCCEESSCTTC--SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHCCEEEeCccccCC--CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999986 3468999999 58899999999999999999998883
No 56
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=3.8e-40 Score=336.41 Aligned_cols=369 Identities=16% Similarity=0.183 Sum_probs=273.1
Q ss_pred hhhhhhhc-cchhhhhHHHHHHHHHHhcccce-eccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 11 MNENVKKV-QYAVRGELYLRASELQKEGKKII-FTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i-~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
+|.+..++ +++.++.++....+.... +++| +|+.|.|+. ++.+.++
T Consensus 4 ~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~g~p~~-------------------------------~~~~~~~ 51 (444)
T 3if2_A 4 FSKFGQKFTQPTGISQLMDDLGDALKS-DQPVNMLGGGNPAK-------------------------------IDAVNEL 51 (444)
T ss_dssp CCHHHHHHHSCCHHHHHHHHHHHHHHS-SSCCEECSCCCCCC-------------------------------CHHHHHH
T ss_pred cchhhhhccCchhHHHHHHHHHhhhcC-chhhhccCCCCCCc-------------------------------ccchHHH
Confidence 34444443 356677777666555433 6799 999999995 3333344
Q ss_pred H----HHHhhh-------c--CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 89 A----KHYLSL-------T--SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 89 ~----~~~~~~-------~--~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
+ .+.+.+ . .....+|++..|.++||+++|+|+.+.+|+.+++++|++|+|+++++..++.+++ ++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~g 130 (444)
T 3if2_A 52 FLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG-GAF 130 (444)
T ss_dssp HHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh-CCC
Confidence 3 333332 1 0113679999999999999999999999999999999999999999999999997 888
Q ss_pred C--------------EEEEc--------c------------Ccee---cCC------CcccChHHHHHHHHHHHHhcCCc
Q 041151 156 D--------------GVVLL--------F------------HTTW---KRQ------QIGVLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 d--------------~Vlvp--------~------------g~~~---~~~------~~~~d~~~~l~~~l~~~~~~~~~ 192 (463)
| .|+++ . |..+ +.+ .+++|+ +.|+++++.. .++
T Consensus 131 d~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~-~~l~~~l~~~---~~~ 206 (444)
T 3if2_A 131 VNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDF-EALENLPALK---EGR 206 (444)
T ss_dssp ECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCH-HHHHTCHHHH---TTC
T ss_pred ccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCH-HHHHHHHHhc---CCC
Confidence 8 77763 1 1111 211 357999 9999984321 117
Q ss_pred eeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
+++|++++||||||.+++.+++++|+++|++||++||+||+|+.+.. ........ + ...+++|+++|||
T Consensus 207 ~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~--~~~~~~~~---~------~~~~~~i~~~S~s 275 (444)
T 3if2_A 207 IGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFP--NIIYSDAH---L------NWDNNTILCFSLS 275 (444)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT--CCBCSCCC---C------CCCTTEEEEEEST
T ss_pred ceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccc--cccccccc---c------cCCCCEEEEechh
Confidence 99999999999999999999999999999999999999999986321 11111100 0 1234789999999
Q ss_pred cccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH-HHHHHHHHHH
Q 041151 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG-ILESLRRRAR 350 (463)
Q Consensus 273 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 350 (463)
| + +++|+|+||++ +++++++.+..... ..++++.+.|.++..+++.. . +..+..+ +++.|+++++
T Consensus 276 K-~-~~~G~r~G~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~---~~~~~~~~~~~~~~~~~~ 342 (444)
T 3if2_A 276 K-I-GLPGMRTGIIV---ADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVAND-----R---IKQLSDNEIKPFYQKQAT 342 (444)
T ss_dssp T-T-TCGGGCCEEEE---CCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTS-----H---HHHHHHHTHHHHHHHHHH
T ss_pred h-c-cCCCCceEEEE---ECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcC-----c---hhHHHHHHHHHHHHHHHH
Confidence 9 4 67999999999 69999999988775 56788999999999988632 2 2333333 6778888888
Q ss_pred HHHHHhhc-CC--CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC-------
Q 041151 351 MMTDGFNS-CR--NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE------- 420 (463)
Q Consensus 351 ~l~~~L~~-~p--g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~------- 420 (463)
.+.+.|.+ ++ ++.+..|++++|+|++++.. + .+..+++ ..|.++||.+.||+.|....
T Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~-~----------~~~~~l~-~~l~~~gi~v~~g~~~~~~~~~~~~~~ 410 (444)
T 3if2_A 343 LAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL-P----------ISTLDLY-ERLKAKGTLIVPSEYFFPGVDVSDYQH 410 (444)
T ss_dssp HHHHHHHHHSSSSSEEEECCCBSSEEEEEETTC-S----------SCHHHHH-HHHHHTTEECEEGGGSCTTCCCTTCSG
T ss_pred HHHHHHHHhcccCCceEecCCccEEEEEEcCCC-C----------CCHHHHH-HHHHHCCeEEecchhhcCCCCCccccc
Confidence 88888866 55 45677889999999766521 1 1234444 45678899999999986421
Q ss_pred CCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 421 GIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 421 ~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..+++|||++.+++++++++++|+++++++++
T Consensus 411 ~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 411 AHECIRMSIAADEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGSEEEEESSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHc
Confidence 23689999998889999999999999987753
No 57
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-40 Score=337.61 Aligned_cols=339 Identities=13% Similarity=0.150 Sum_probs=265.3
Q ss_pred cccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH--HHHHHHHhhhcCCCCCccCCCCCCHHHH
Q 041151 37 GKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA--IARAKHYLSLTSGGLGAYSDSRGIPGVR 113 (463)
Q Consensus 37 ~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~a~~~~~~~~~~~~~~Y~~~~g~~~lr 113 (463)
.+++|||+.|.| +. +. |+.+ ++++.+.+.. ....+|++..|..++|
T Consensus 46 ~~~~i~l~~g~~~~~------------------------~~-----~~~~~~~~a~~~~~~~--~~~~~y~~~~g~~~lr 94 (430)
T 2x5f_A 46 KSTTYNATIGMATNK------------------------DG-----KMFASSLDAMFNDLTP--DEIFPYAPPQGIEELR 94 (430)
T ss_dssp TTCSEECCCSSCEET------------------------TE-----ECCCHHHHTTBSSCCG--GGTSSCCCTTCCHHHH
T ss_pred CCCcEEeeeeeccCC------------------------CC-----chhhHHHHHHHHhcCc--ccccccCCCCCCHHHH
Confidence 356899999999 74 21 3333 5555444432 1356899988999999
Q ss_pred HHHHHHHHHhcCCCCCCCc---EEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee---cCC--Cc
Q 041151 114 KEVAEFIERRDGYPSDPEL---IFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW---KRQ--QI 171 (463)
Q Consensus 114 ~~ia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~---~~~--~~ 171 (463)
+++++++.+++ +.+++++ |++|+|+++++..++.+++ ++||+|+++ .|.++ +.+ ++
T Consensus 95 ~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~ 172 (430)
T 2x5f_A 95 DLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSLVGDLFV-NQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG 172 (430)
T ss_dssp HHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTS
T ss_pred HHHHHHHhccC-cccCCCccceEEEcCCchHHHHHHHHHHh-CCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccC
Confidence 99999997664 6678889 9999999999999999997 899999997 24444 211 36
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-----CCeEEEecccccccccCCCCCcc
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-----ENLVLLGDEVYQQNIYQDERPFV 246 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-----~~~~vi~Deay~~~~~~~~~~~~ 246 (463)
++|+ +.|++.+++. +.++++|++++||||||.+++.+++++|+++|++ +|++||+||+|..+.++ +.+..
T Consensus 173 ~~d~-~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~-~~~~~ 247 (430)
T 2x5f_A 173 HYTT-DSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYE-DVYTQ 247 (430)
T ss_dssp CBCS-HHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCS-SSCCS
T ss_pred CcCH-HHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCC-cccch
Confidence 8999 9999999752 1258999999999999999999999999999999 99999999999998873 33344
Q ss_pred chH-HHHHhcCCCCCCCce---EEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-----hcccCChHHHHHH
Q 041151 247 SSK-KVLMDMGLPFSKEVQ---LVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-----IALSPNVPAQIFM 317 (463)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~---~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~q~~~ 317 (463)
++. .+. + ..++ +|+++|+||+| |++|+|+||+++.+.++++++.+..... ..++++.+.|.++
T Consensus 248 ~~~~~~~-~------~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 319 (430)
T 2x5f_A 248 SLFTALT-N------LHSNAILPIRLDGATKEF-FAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAV 319 (430)
T ss_dssp CHHHHHH-T------TCCTTEEEEEEEEHHHHT-TCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHh-h------ccCCcceEEEEEecccCC-CCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHH
Confidence 554 441 1 1335 89999999999 8999999999921118889988876553 3567899999999
Q ss_pred HHhcC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 318 GLMVN-PLKPGDISYEQFVRESKGILESLRRRARMMTDGFN----SCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 318 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
..+|+ . . .+.++++++++.++++++.+.+.|+ +. |+.+..+++++|+|++++ ..
T Consensus 320 ~~~l~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~-~~----------- 378 (430)
T 2x5f_A 320 KHVLKNN-----K---QFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH-DV----------- 378 (430)
T ss_dssp HHHHHSC-----H---HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES-SS-----------
T ss_pred HHHHccC-----h---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC-CC-----------
Confidence 99884 3 1 2455566689999999999999998 55 788888999999997664 11
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..+++..+++++||.+.|| +.+++||+++ .+++++++++++|+++++++
T Consensus 379 -~~~~~~~~l~~~~gi~v~~g-------~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 379 -DPEALRKHLIDKYSIGVIAL-------NATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp -CHHHHHHHHHHHHCEECEEC-------SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhCCEEEecC-------CCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 24556666555589999997 2348999999 99899999999999998764
No 58
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=3.9e-41 Score=340.10 Aligned_cols=355 Identities=12% Similarity=0.081 Sum_probs=255.1
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHh-cccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKE-GKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
.++++++.+.+++++..+... .+++ .+++|||+.|+| +. +. |+.+.
T Consensus 14 ~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~i~l~~g~~~d~------------------------~~-----~~~v~ 61 (409)
T 4eu1_A 14 AQTQGPGSMGKPDPILGLGQD---FRMDPAKRKVNLSIGVYRDD------------------------AD-----QPFVL 61 (409)
T ss_dssp -------------CHHHHHHH---HHHCCCSSCEECCCSSCCCT------------------------TS-----CCCCC
T ss_pred hhHhhcCCCCCCChHHHHHHH---HhhCCCcCceeeeeeEEECC------------------------CC-----CEeec
Confidence 367889999999976655544 3433 456999999998 64 22 44455
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE--EcCCcHHHHHHHH---HHHhcCCCCEEEEc
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF--LTDGASKGVMQTL---NCVIRGEGDGVVLL 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~---~~l~~~~gd~Vlvp 161 (463)
+++.++.. ....+|++..|.++||+++++++....+.++++++|. .|.|+++++..+. .+++ ++||.|+++
T Consensus 62 ~a~~~a~~---~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~-~~gd~Vlv~ 137 (409)
T 4eu1_A 62 ECVKQATL---GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFV-ANCNRIYGP 137 (409)
T ss_dssp HHHHTCCC---CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTS-SSCCEEEEE
T ss_pred HHHHhcCc---cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhc-CCCCEEEEe
Confidence 66655522 2567899999999999999999853222223377884 5888888888764 3444 799999997
Q ss_pred -------------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 -------------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 -------------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ + .+++++|+ +.|++.+++. ..+++++++++||||||.+++.+++++|+++|+
T Consensus 138 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~ 213 (409)
T 4eu1_A 138 DVGYPNHESIFAKAGMELTPYSYYDPATKGLNL-AGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIK 213 (409)
T ss_dssp SSCCTHHHHHHHHTTCEEEEECCEETTTTEECH-HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcH-HHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Confidence 56665 2 45689999 9999999741 014566677899999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCC--CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE--EecCCChh----
Q 041151 223 QENLVLLGDEVYQQNIYQDER--PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF--EMTNIPPK---- 294 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~--~~~~~~~~---- 294 (463)
++|++||+||+|.++.++ +. ...++..+. +...++|+++||||+| |++|+|+||+ ++ ++++
T Consensus 214 ~~~~~li~De~y~~~~~~-~~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-g~~G~riG~~~~v~--~~~~~~~~ 282 (409)
T 4eu1_A 214 RRNHIPFVDMAYQGFATG-QLDYDAFVPRHLV-------DMVPNLIVAQSFSKNF-GLYGHRCGALHIST--ASAEEAKR 282 (409)
T ss_dssp HTTCEEEEEESCTTTTTS-CHHHHTHHHHHHH-------TTSSCCEEEEECTTTS-SCGGGCCEEEEEEC--SSHHHHHH
T ss_pred hCCcEEEEeccccccccC-CcccchHHHHHHH-------hhCCcEEEEecCcccc-cCccCCceEEEEEe--CCHHHHHH
Confidence 999999999999998873 21 112333321 2234689999999999 9999999997 54 6777
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----cccccCCc
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN----VVCNFTEG 369 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg----~~~~~~~g 369 (463)
+++.+.+... ...+++.+.|.++..++++. ....++.++.++++++++++++++.+.|+++ | +.+..|++
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 357 (409)
T 4eu1_A 283 LVSQLALLIRPMYNNPPLYGAWVVSSILKDP----QLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSHIERQV 357 (409)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHSC
T ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcceecCCc
Confidence 6666666553 45677899999999888531 1123345557788999999999999999987 4 78888999
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
++|+|++++ .+++..+++++||.+.|| .||+++ .+++++++++++|++++
T Consensus 358 ~~~~~~~~~-----------------~~~~~~ll~~~gv~v~p~-----------~Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 358 GMMAYTGLT-----------------REQVELLRSEYHIYMTLN-----------GRAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp SSEEECCCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred eEEEEeCCC-----------------HHHHHHHHHcCCEEEcCC-----------CEEEEEecCHhhHHHHHHHHHHHh
Confidence 999994432 234677888899999984 389999 77889999999998875
No 59
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=4.1e-40 Score=327.26 Aligned_cols=341 Identities=15% Similarity=0.166 Sum_probs=267.2
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++.+..+.++..+.-.....+ +-..+++|+|+.|.+.+ +. |+.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 53 (365)
T 3get_A 4 FNEFLNNLSNYEPGKDIEVIAK-EYGVKEVIKLASNENPF------------------------GT-----PPKAIECLR 53 (365)
T ss_dssp CCGGGGGSCCCCCCCCHHHHHH-HTTCSCCEECSSCCCTT------------------------CS-----CHHHHHHHH
T ss_pred cchhHhhcCCCCCCCCHHHHHH-hcCCCceEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 3455556655443332221111 11236799999998775 44 889999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ...|++..+ .++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~----~~~y~~~~~-~~lr~~la~~~~------~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~ 121 (365)
T 3get_A 54 QNANK----AHLYPDDSM-IELKSTLAQKYK------VQNENIIIGAGSDQVIEFAIHSKL-NSKNAFLQAGVTFAMYEI 121 (365)
T ss_dssp HHGGG----TTSCCCTTC-HHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHH
T ss_pred HHHHh----hccCCCCCh-HHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCChHHHHH
Confidence 88764 467888766 899999999986 678999999999999999999997 899999997
Q ss_pred ----cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 ----FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 ----~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ + .+++ +|+ +.|++++++ ++++|++++||||||.+++.+++.+|+++| ++|+++|+||
T Consensus 122 ~~~~~g~~~~~v~~~~~~~-~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De 192 (365)
T 3get_A 122 YAKQCGAKCYKTQSITHNL-DEF-KKLYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDA 192 (365)
T ss_dssp HHHHHTCEEEECSSSSCCH-HHH-HHHHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEEC
T ss_pred HHHHcCCEEEEEecCCCCC-CCH-HHHHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeC
Confidence 56665 3 4667 999 999999986 899999999999999999999999999999 5799999999
Q ss_pred ccccccc--CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCC
Q 041151 233 VYQQNIY--QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPN 310 (463)
Q Consensus 233 ay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (463)
+|+.+.| .+.. ..+...... ..+++++++|+||++ |++|+|+||+++ ++++++.+..... .++++
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~-~~~~~ 259 (365)
T 3get_A 193 AYNEFASFKDSKK-HLEPCELIK-------EFDNVLYLGTFSKLY-GLGGLRIGYGIA---NANIISAFYKLRA-PFNVS 259 (365)
T ss_dssp TTHHHHHHHCGGG-CCCHHHHHH-------HCTTEEEEEESSSTT-SCTTTCCEEEEE---CHHHHHHHHHHSC-TTCSC
T ss_pred ccHHHhcccCCcc-cccHhHHhc-------cCCCEEEEeecchHh-cCcchheEEEEc---CHHHHHHHHHhcC-CCCcC
Confidence 9998774 2222 233333322 224689999999999 899999999994 8999999988776 46789
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+++. ..+.++.+++++++++.+.+.|+++ |+.+.++.++ |+|++++ ..
T Consensus 260 ~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-~~~~~~~--~~-------- 316 (365)
T 3get_A 260 NLALKAAVAAMDD-----------DEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTN-FITYFFD--EK-------- 316 (365)
T ss_dssp HHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECS--SS--------
T ss_pred HHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCe-EEEEECC--CC--------
Confidence 9999999999862 1445667888999999999999998 8888776665 4775543 21
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+..++. ..|.++||.+.||..|+ .+++||+++ +++++++++++|++++
T Consensus 317 ---~~~~~~-~~l~~~gi~v~~g~~~~----~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 ---NSTDLS-EKLLKKGIIIRNLKSYG----LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ---CHHHHH-HHHHTTTEECEECGGGT----CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred ---CHHHHH-HHHHHCCEEEEECccCC----CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 244444 45667899999999987 348999999 6689999999998875
No 60
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=5.4e-40 Score=331.89 Aligned_cols=367 Identities=12% Similarity=0.079 Sum_probs=278.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
++++++...+++.++.+...+.+. +++++|||+.|.| +..|. .+ .++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~--------------------~~-----~~~~v~~a 56 (412)
T 1ajs_A 4 SVFAEVPQAQPVLVFKLIADFRED--PDPRKVNLGVGAYRTDDCQ--------------------PW-----VLPVVRKV 56 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTC--CCTTCEECCSCCCCCTTSC--------------------CC-----CCHHHHHH
T ss_pred chhhhCcccCCchHHHHHHHHhhc--CCCCceeeccceecCCCCC--------------------cc-----ccHHHHHH
Confidence 467788899999999888766543 4677999999987 42110 01 26788888
Q ss_pred HHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHH--HHhcCCC-----CEEE
Q 041151 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLN--CVIRGEG-----DGVV 159 (463)
Q Consensus 89 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~--~l~~~~g-----d~Vl 159 (463)
+.+.+... ...+.|++..|..+||+++++++...+|+.+++++|++ |+|+++++..++. .++ ++| |+|+
T Consensus 57 ~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~~~~~d~Vl 134 (412)
T 1ajs_A 57 EQRIANNS-SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGTNNKDTPVY 134 (412)
T ss_dssp HHHHHTCT-TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSSSCCCSCEE
T ss_pred HHHhhhCh-hhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCcCCCCCeEE
Confidence 87776321 24568988899999999999999766666667899999 9999999999964 455 799 9999
Q ss_pred Ec-------------cCce-e---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 160 LL-------------FHTT-W---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 160 vp-------------~g~~-~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
++ .|++ + + .+++.+|+ +.|++.+++. ++++++|++++||||||.+++.+++++|++
T Consensus 135 ~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~ 210 (412)
T 1ajs_A 135 VSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDL-QGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIAS 210 (412)
T ss_dssp EEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECH-HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred EcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCH-HHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHH
Confidence 97 6776 5 2 26788999 9999998752 125678888999999999999999999999
Q ss_pred HhhhCCeEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK---- 294 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~---- 294 (463)
+|++||++||+||+|..+.+++. ....++..+.. ..+++|++.|+||.+ |++|+|+||+++...+++
T Consensus 211 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~ 282 (412)
T 1ajs_A 211 VMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS-------EGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILR 282 (412)
T ss_dssp HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-------TTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHH
T ss_pred HHHHCCCEEEEEcccccccCCcccccchHHHHHhc-------cCCcEEEEEeccccc-CCCCcceEEEEEecCCHHHHHH
Confidence 99999999999999999876210 12223433321 123689999999999 888999999993111676
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCce
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGA 370 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~ 370 (463)
+++.+.+... ...+++.+.|.++..+|+.. ..+..+.++.++++++++++++++.+.|++++ ++.+..|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 358 (412)
T 1ajs_A 283 VLSQMQKIVRVTWSNPPAQGARIVARTLSDP----ELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIG 358 (412)
T ss_dssp HHHHHHHHHHTTTSSCCSHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCS
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHcCc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCc
Confidence 4444555333 23446899999998888521 01112334566789999999999999999873 4888888999
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
+|+|++++ .+++..+++++||.+.|+ +||+++ .+++++++++++|++++++
T Consensus 359 ~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 359 MFSFTGLN-----------------PKQVEYLINQKHIYLLPS-----------GRINMCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp SEEECCCC-----------------HHHHHHHHHTTCEECCTT-----------SEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred eEEEeCCC-----------------HHHHHHHHHhCCEEecCC-----------cEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence 99995432 234667788899999873 599999 6899999999999998865
No 61
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=2.9e-40 Score=332.83 Aligned_cols=356 Identities=19% Similarity=0.246 Sum_probs=265.4
Q ss_pred hhhhhhhccc-hhhhhHHHHHHHHHH--hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 11 MNENVKKVQY-AVRGELYLRASELQK--EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
+++++.++++ +.+..+.....+... .++++|+|+.|+++. +. |+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~ 53 (400)
T 3asa_A 3 RNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQ------------------------PL-----NASVAE 53 (400)
T ss_dssp CCHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCC------------------------CC-----CHHHHH
T ss_pred cchhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCC------------------------CC-----CHHHHH
Confidence 5788888776 445666665555543 367799999998874 33 788899
Q ss_pred HHHHHhhhcCC--CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----
Q 041151 88 RAKHYLSLTSG--GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---- 161 (463)
Q Consensus 88 a~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---- 161 (463)
++.+++..... ...+|++..|..+||+++++++. +|+ +++++|++|+|+++++..++. ++ ++||+|+++
T Consensus 54 a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~-~~-~~gd~Vl~~~p~y 128 (400)
T 3asa_A 54 AFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLS-FF-GPNQTVAIQDPSY 128 (400)
T ss_dssp HHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHH-HH-CSSCEEEEEESCC
T ss_pred HHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHH-Hc-CCCCEEEECCCCc
Confidence 88887765311 24679888899999999999974 465 678999999999999998765 55 799999996
Q ss_pred ---------cCce-e---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ---------FHTT-W---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ---------~g~~-~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|.+ + +. ..+..|+ +.+ + ++++|++++||||||.+++.+++++|+++|+++|
T Consensus 129 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l-~~~-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 196 (400)
T 3asa_A 129 PAYLDIARLTGAKEIIALPCLQENAFFPEF-PED-----T------HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHE 196 (400)
T ss_dssp HHHHHHHHHTTCSEEEEEECCGGGTTCCCC-CTT-----C------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcceEecccchhcCcccCh-hhc-----c------CccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 5655 4 22 2233444 321 2 7899999999999999999999999999999999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhH-------HH
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT-------VD 297 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~-------~~ 297 (463)
++||+||+|.++.++ +..+.++..+ +. .+++|+++||||+| |++|+|+||++ +++++ ++
T Consensus 197 ~~li~De~~~~~~~~-~~~~~~~~~~--------~~~~~~~i~~~s~sK~~-g~~GlriG~~~---~~~~~~~~~~~~~~ 263 (400)
T 3asa_A 197 ILILFDAAYSTFISD-PSLPKSIFEI--------PDARFCAIEINSFSKPL-GFAGIRLGWTV---IPQELTYADGHFVI 263 (400)
T ss_dssp CEEEEECTTGGGCCC-TTSCSSGGGS--------TTGGGTEEEEEECCGGG-TTTTCCCEEEE---CCTTCBCTTSCBHH
T ss_pred CEEEEEchhhhhhcC-CCCCCchhhC--------CCCCCceEEEecchhhc-CCcchheeEEe---eChhhccchhhhHH
Confidence 999999999987763 3222344332 21 24689999999999 89999999998 47777 66
Q ss_pred HHHhhh-hh-cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 298 EIYKIA-SI-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 298 ~l~~~~-~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
.+.... .. ..+++.+.|.++..+|+. . +.+++++.++++++.+.+.|++. |+.+..+.+++|+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~----------~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 330 (400)
T 3asa_A 264 QDWERFLSTTFNGASIPAQEAGVAGLSI----------L--PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWV 330 (400)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHH----------T--TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEE
T ss_pred HHHHHHhccCccCCChHHHHHHHHHhCc----------H--HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEE
Confidence 664432 22 346899999998888741 1 34457788999999999999988 888888888899996
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
++ +|.+. ++.+++..+++++||.+.||+.|+. .+.+++||++..+++++++++++|++++++.
T Consensus 331 ~~-~~~~~----------~~~~~~~~l~~~~gv~v~~g~~f~~-~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 331 KP-TQANI----------SDRDLFDFFLREYHIAITPGIGFGR-SGSGFVRFSSLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp EC-CCTTC----------CTTTHHHHHHHHHSEECEEGGGGCG-GGTTCEEEECCSCHHHHHHHHHHHHC-----
T ss_pred ec-cCCCC----------CHHHHHHHHHHhCCEEEeChhHhCC-CCCCEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 61 33221 2335566677778999999999874 2456899997788899999999999887654
No 62
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-39 Score=329.77 Aligned_cols=366 Identities=13% Similarity=0.091 Sum_probs=273.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
|+.++...++++++.+...+.+. .++++|||+.|.| +..+. .+ .++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~d~~~~--------------------~~-----~~~~v~~a~ 56 (412)
T 1yaa_A 4 LFNNIELLPPDALFGIKQRYGQD--QRATKVDLGIGAYRDDNGK--------------------PW-----VLPSVKAAE 56 (412)
T ss_dssp TTTTCCCCCCCTTHHHHHHHHTC--CCSSCEECSSCCCBCTTSC--------------------BC-----CCHHHHHHH
T ss_pred hhccCcccCCCcHHHHHHHHhcC--CCCCeEEEeeeeeeCCCCC--------------------CC-----CcHHHHHHH
Confidence 67888888888888777655433 4677999999987 32110 01 278888888
Q ss_pred HH-HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHH--HHHhcCCCCEEEEc---
Q 041151 90 KH-YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTL--NCVIRGEGDGVVLL--- 161 (463)
Q Consensus 90 ~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~--~~l~~~~gd~Vlvp--- 161 (463)
.+ .+.. ...++|++..|..++|+++++++...+|+.+++++|++ |+|+++++..++ ..++ ++||+|+++
T Consensus 57 ~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~ 133 (412)
T 1yaa_A 57 KLIHNDS--SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPT 133 (412)
T ss_dssp HHHHTCT--TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESC
T ss_pred HhhhcCc--ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence 88 7753 24568988899999999999999766676677899999 999999999984 4445 699999997
Q ss_pred ----------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ----------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ----------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|.++ +. +++++|+ +.|++.+++. .+.+.++++++||||||.+++.+++++|+++|+++|
T Consensus 134 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~ 209 (412)
T 1yaa_A 134 WANHMAIFENQGLKTATYPYWANETKSLDL-NGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKN 209 (412)
T ss_dssp CTTHHHHHHTTTCCEEEEECEETTTTEECH-HHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHcCceEEEEeeecCCCCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 55555 22 3688999 9999999761 001344445899999999999999999999999999
Q ss_pred eEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE-ecCC-----Chh----
Q 041151 226 LVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE-MTNI-----PPK---- 294 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~-~~~~-----~~~---- 294 (463)
++||+||+|..+.+++. ....++..+.... ++..++|+++|+||.+ |++|+|+||++ + + +++
T Consensus 210 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~s~sK~~-~~~GlriG~~~~~--~~~~~~~~~~~~~ 282 (412)
T 1yaa_A 210 HIALFDTAYQGFATGDLDKDAYAVRLGVEKL----STVSPVFVCQSFAKNA-GMYGERVGCFHLA--LTKQAQNKTIKPA 282 (412)
T ss_dssp CEEEEEESCTTTSSSCHHHHTHHHHHHHHHT----TTTCCEEEEEECTTTS-CCGGGCEEEEEEE--CCSCTTHHHHHHH
T ss_pred CEEEEecccccccCCcccchhHHHHHHHhcC----CCCcceEEEeccCCCC-CCcCCcceEEEEE--ecCCCCCHHHHHH
Confidence 99999999998877310 0122333332111 1001689999999999 88899999997 3 2 455
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCce
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGA 370 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~ 370 (463)
+++.+..... ...+++.+.|.++..+|+.. ...+.+.++.++++++++++++++.+.|++++ ++.+..|+++
T Consensus 283 l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 358 (412)
T 1yaa_A 283 VTSQLAKIIRSEVSNPPAYGAKIVAKLLETP----ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCG 358 (412)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCS
T ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCce
Confidence 7777776443 34566899999999888521 11112344567789999999999999999873 4888889999
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
+|+|++++ .. .+..+++++||.+.| ++|||++ .+++++++++++|+++++.
T Consensus 359 ~~~~~~~~----------------~~-~~~~~l~~~gi~v~~-----------~~Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 359 MFSFTGLT----------------PQ-MVKRLEETHAVYLVA-----------SGRASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp SEEECCCC----------------HH-HHHHHHHHHCEECCT-----------TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EEEeeCCC----------------HH-HHHHHHHhCCEEecc-----------CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence 99995432 22 346778889999987 3699999 5899999999999988753
No 63
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=3.3e-39 Score=319.24 Aligned_cols=318 Identities=17% Similarity=0.163 Sum_probs=257.5
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+++++|||+.|.+.+ +. |+.+++++.+.+.. ...|+. .+..++|++
T Consensus 14 ~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~~-~~~~~l~~~ 59 (354)
T 3ly1_A 14 STDNPIRINFNENPL------------------------GM-----SPKAQAAARDAVVK----ANRYAK-NEILMLGNK 59 (354)
T ss_dssp CSSSCEECSSCCCSS------------------------CC-----CHHHHHHHHHTGGG----TTSCCH-HHHHHHHHH
T ss_pred CCCceEEccCCCCCC------------------------CC-----CHHHHHHHHHHHhh----CcCCCC-CchHHHHHH
Confidence 467899999998775 44 88999999887764 357754 478999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-CCCcccChHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-RQQIGVLIIND 178 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-~~~~~~d~~~~ 178 (463)
++++++ +++++|++|+|+++++..++.+++ ++||+|+++ .|.++ + ..++++|+ +.
T Consensus 60 la~~~~------~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~ 131 (354)
T 3ly1_A 60 LAAHHQ------VEAPSILLTAGSSEGIRAAIEAYA-SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDI-EG 131 (354)
T ss_dssp HHHHTT------SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCH-HH
T ss_pred HHHHhC------CChHHEEEeCChHHHHHHHHHHHh-CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCH-HH
Confidence 999985 778999999999999999999997 899999997 56665 3 33689999 99
Q ss_pred HHHHHH--HHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 179 LQQSVA--QARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 179 l~~~l~--~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
|++.++ + ++++|++++||||||.+++.+++.+|+++| ++|+++|+||+|..+.++ +... +.....
T Consensus 132 l~~~l~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~-~~~~-~~~~~~---- 198 (354)
T 3ly1_A 132 LKAAVAAYS------GPSIVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVND-PRFR-SISPMI---- 198 (354)
T ss_dssp HHHHHHTCS------SCEEEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCC-TTCC-CSHHHH----
T ss_pred HHHHhccCC------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccc-cccC-CHHHHh----
Confidence 999998 5 899999999999999999999999999999 899999999999998773 3322 333322
Q ss_pred CCCCCC-ceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 257 LPFSKE-VQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 257 ~~~~~~-~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
+.. +++++++|+||++ |++|+|+||++ +++++++.+..... .++++.+.|.++..+++. .
T Consensus 199 ---~~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~-----------~ 259 (354)
T 3ly1_A 199 ---TQGAENIILLKTFSKIH-AMAGMRVGYAV---AHPTVIALMGRYVA-GEKINFSGVDAALASMND-----------S 259 (354)
T ss_dssp ---HTTCSSEEEEEESSSTT-CCGGGCCEEEE---CCHHHHHHHGGGTT-CSCCCHHHHHHHHHHTTC-----------H
T ss_pred ---hhcCCCEEEEeeChhhc-cChhhhheeee---cCHHHHHHHHHhcC-CCCCCHHHHHHHHHHhcC-----------H
Confidence 222 4789999999999 99999999999 58999999988776 478899999999999862 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
.+.++.+++++++++.+.+.|+++ |+.+.++.| .|+|++++ . +..++. ..|.++||.+. |..
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~-~~~~~~~~--~------------~~~~~~-~~l~~~gi~v~-g~~ 321 (354)
T 3ly1_A 260 AFITYSKKSNDVSRQILLKALEDL-KLPYLPSEG-NFVFHQLV--V------------PLKDYQ-THMADAGVLIG-RAF 321 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCCS-SEEEEECS--S------------CHHHHH-HHHHHTTEECC-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCeECCCCc-eEEEEECC--C------------CHHHHH-HHHHHCCEEEe-ecC
Confidence 445667888999999999999988 888776554 55785543 1 134444 45667899999 765
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
++ ..+++||+++ +++++++++++|++++++
T Consensus 322 ~~---~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 322 PP---ADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp TT---CTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CC---CCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 54 3458999998 568999999999988754
No 64
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=2.7e-39 Score=321.17 Aligned_cols=340 Identities=17% Similarity=0.154 Sum_probs=262.8
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..+.++..+.......+. -..+++|||+.|.+.+ +. |+.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 55 (363)
T 3ffh_A 6 WKKSLAGLSSYKPGKREEEVMAE-LGLTKITKLSSNENPL------------------------GT-----SKKVAAIQA 55 (363)
T ss_dssp CCGGGTTCCC----CHHHHHHHT-TTCSCCEECSSCSCTT------------------------CC-----CHHHHHHHH
T ss_pred hhHHHHhCCCCCCCCCHHHHHHh-cCCCceEEccCCCCCC------------------------CC-----CHHHHHHHH
Confidence 56677777766554333222111 1235799999998775 43 888888888
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ...|+. .+..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 56 ~~~~~----~~~y~~-~~~~~lr~~la~~~~------~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~ 123 (363)
T 3ffh_A 56 NSSVE----TEIYPD-GWASSLRKEVADFYQ------LEEEELIFTAGVDELIELLTRVLL-DTTTNTVMATPTFVQYRQ 123 (363)
T ss_dssp TCBSC----CCBC-----CHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHC-STTCEEEEEESSCHHHHH
T ss_pred HHHHH----hhcCCC-cchHHHHHHHHHHhC------CChhhEEEeCCHHHHHHHHHHHHc-cCCCEEEEcCCChHHHHH
Confidence 76543 456754 578999999999996 778999999999999999999997 899999997
Q ss_pred ----cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 ----FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 ----~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|.++ + ..++.+|+ +.|++++++ ++++|++++||||||.+++.+++.+|++.|++ |+++|+||+
T Consensus 124 ~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~ 195 (363)
T 3ffh_A 124 NALIEGAEVREIPLLQDGEHDL-EGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEA 195 (363)
T ss_dssp HHHHHTCEEEEEECCTTSCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECT
T ss_pred HHHHcCCEEEEecCCCCCCcCH-HHHHHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCc
Confidence 56665 3 33788999 999999876 89999999999999999999999999998888 999999999
Q ss_pred ccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHH
Q 041151 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPA 313 (463)
Q Consensus 234 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (463)
|+++.+ +. .. +.... . ...+++|+++|+||.+ |++|+|+||+++ ++++++.+..... .++++.+.
T Consensus 196 ~~~~~~-~~-~~-~~~~~---~----~~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~~-~~~~~~~~ 260 (363)
T 3ffh_A 196 YIEYVT-PQ-PE-KHEKL---V----RTYKNLIITRTFSKIY-GLASARVGYGIA---DKEIIRQLNIVRP-PFNTTSIG 260 (363)
T ss_dssp TGGGCS-SC-CC-CCGGG---G----GTCTTEEEEEESSSTT-CCSSCCCEEEEE---CHHHHHHHHHTCC-SCCCBHHH
T ss_pred hHhhcC-cc-cc-CHHHH---h----hcCCCEEEEeechhhh-cCchhceeeeec---CHHHHHHHHHhCC-CCCCCHHH
Confidence 998766 22 11 22121 1 3345789999999999 899999999994 8999999988776 67889999
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC
Q 041151 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV 393 (463)
Q Consensus 314 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 393 (463)
|.++..+++. ..+.++.+++++++++.+.+.|++++|+.+.++.+ .|+|++++ .
T Consensus 261 ~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~~~--~------------ 314 (363)
T 3ffh_A 261 QKLAIEAIKD-----------QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANG-NFVLIDLG--I------------ 314 (363)
T ss_dssp HHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCS-SEEEEECS--S------------
T ss_pred HHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCC-eEEEEECC--C------------
Confidence 9999988752 24456678889999999999999966988876655 55775543 1
Q ss_pred ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 394 PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 394 ~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
+..++. +.|.++||.+.+|..|+. .+++||+++ +++++++++++|+++
T Consensus 315 ~~~~~~-~~l~~~gi~v~~g~~~~~---~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 315 EAGTIF-SYLEKNGYITRSGAALGF---PTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp CHHHHH-HHHHHTTEECEETTTTTC---TTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHCCeEEEeCccCCC---CCeEEEECC-CHHHHHHHHHHHHHh
Confidence 134444 455678999999999976 348999999 678999999999875
No 65
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=3.1e-39 Score=330.19 Aligned_cols=362 Identities=13% Similarity=0.095 Sum_probs=268.6
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhccc-ceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKK-IIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
++..++...++++ +....+++++++.+ +|||+.|.| +..+. + .+.+.+.+
T Consensus 23 ~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~---------------------~----~v~~av~~ 74 (448)
T 3meb_A 23 SVFSGFPASPPDA---ILNLTVLYNADTNPKKVNLGVGAYRDESGK---------------------P----WILPAVKE 74 (448)
T ss_dssp CTTTTCCCCCCCT---THHHHHHHHHCCCTTCEEESSCCCCCTTSC---------------------C----CCCHHHHH
T ss_pred hHHhcCCCCCCCh---HHHHHHHHHhCCCCCeEEeecccccCCCCC---------------------E----echHHHHH
Confidence 4555665556654 44555666767655 799999998 64111 1 12456666
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC---CCCCcEEE--cCCcHHHHHH--HHHHHhcCCCCEEEE
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP---SDPELIFL--TDGASKGVMQ--TLNCVIRGEGDGVVL 160 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~---~~~~~i~~--t~G~~~al~~--~~~~l~~~~gd~Vlv 160 (463)
++.+...........|.+..|.+++|+++++++. |.. +++++|++ |+|+++++.+ .+..++ ++||+|++
T Consensus 75 a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~-~~gd~Vlv 150 (448)
T 3meb_A 75 AEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW-MPKAEFYM 150 (448)
T ss_dssp HHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCCEEE
T ss_pred HHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 6555441111245789999999999999999983 433 23689999 9999999988 556676 89999999
Q ss_pred c-----------c------Ccee---c--CC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 161 L-----------F------HTTW---K--RQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 161 p-----------~------g~~~---~--~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+ . |.++ + +. ++.+|+ +.|++.+++. ..+++++++++||||||.+++.+++++
T Consensus 151 ~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~-e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~ 226 (448)
T 3meb_A 151 PSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDF-SNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKE 226 (448)
T ss_dssp ESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCH-HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred CCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCH-HHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHH
Confidence 6 2 3333 2 22 488999 9999999851 015778888899999999999999999
Q ss_pred HHHHhhhCCeEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE--EecCC--
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF--EMTNI-- 291 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~--~~~~~-- 291 (463)
|+++|+++|+++|+||+|..+.+++. ....++..+. + ...++|++.||||.| |++|+|+||+ + .
T Consensus 227 i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-g~~G~RiG~l~~v---~~~ 295 (448)
T 3meb_A 227 LLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFV-D------AGVEVLVAQSFSKNF-GLYGERIGCLHVV---HAG 295 (448)
T ss_dssp HHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHH-H------TTCCEEEEEECTTTS-CCGGGCCEEEEEE---CCC
T ss_pred HHHHHHHCCCEEEEecccccccCCCcccCchhHHHHh-h------cCCcEEEEecccccC-CCccccceeeeee---ecc
Confidence 99999999999999999999877310 1112233221 1 223689999999999 9999999998 5 3
Q ss_pred -------Ch----hHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 292 -------PP----KTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 292 -------~~----~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
++ ++++.+.+... ...+++.+.|.++..+|+.. .....+.+++++++++++++++++.+.|+++
T Consensus 296 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 296 VEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDK----RLLQMFYDNVKEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34 56666666543 45678899999999998631 1223444567788999999999999999886
Q ss_pred --CC------cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 360 --RN------VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 360 --pg------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
++ +.+..|++++|+|++++ .+++..+++++||.+.||+ .|||++
T Consensus 372 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~ll~~~gV~v~~G~----------gRis~a~ 424 (448)
T 3meb_A 372 KTPGPGSKGTWDHILTAIGMFTFTGLT-----------------PEHVDYLKEKWSIYLVKAG----------GRMSMCG 424 (448)
T ss_dssp TCCCSTTTCCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEEECSGG----------GEEEGGG
T ss_pred CCCCcCcccccceeCCCceEEEecCCC-----------------HHHHHHHHHhCCEEEeCCC----------cEEEEec
Confidence 66 77788899999995443 3456777889999999975 199999
Q ss_pred CCcCcHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++++++++++|++++++
T Consensus 425 ~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 425 LTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 5889999999999999874
No 66
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=2.7e-40 Score=344.74 Aligned_cols=338 Identities=19% Similarity=0.231 Sum_probs=254.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHHHHHHHHh-cC-CCCC-CCcEEEcCCcHHHHHHHHHH-----Hhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEVAEFIERR-DG-YPSD-PELIFLTDGASKGVMQTLNC-----VIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~-~g-~~~~-~~~i~~t~G~~~al~~~~~~-----l~~ 152 (463)
|+.+++++.+.+.. ..|+ +..|.+++|+++++++.++ ++ +.++ +++|++|+|+++++..++.+ ++
T Consensus 117 ~~~~v~a~~~~~~~-----~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~- 190 (533)
T 3f6t_A 117 RDKVVAEWVNGAVA-----NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL- 190 (533)
T ss_dssp HHHHHHHHHHHHHT-----CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS-
T ss_pred CcHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc-
Confidence 67777777776664 2454 7789999999999999766 35 5665 46999999999999999998 66
Q ss_pred CCCCEEEEc-------------cCcee---c-----CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 153 GEGDGVVLL-------------FHTTW---K-----RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 153 ~~gd~Vlvp-------------~g~~~---~-----~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
++||+|+++ .|..+ + ..++++|+ +.|++++++ ++++|++++||||||.+++.
T Consensus 191 ~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~-~~l~~~l~~------~~k~v~l~~p~NPtG~~~~~ 263 (533)
T 3f6t_A 191 KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEP-NEIEKLKDP------SIKALIVVNPTNPTSKEFDT 263 (533)
T ss_dssp CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECH-HHHHHHSCT------TEEEEEEESSCTTTCBCCCH
T ss_pred CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCH-HHHHHHhCC------CCeEEEEeCCCCCCccccCH
Confidence 899999997 34443 1 45689999 999999876 89999999999999999999
Q ss_pred HHHHHHHHHhh-hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 212 ANLREILRFCY-QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 212 ~~l~~l~~~a~-~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++++|+++|+ +|+++||+||+|..+.+ + ..++... . .+++|+++||||.+ |++|+|+||+++
T Consensus 264 ~~l~~l~~la~~~~~~~li~De~y~~~~~-~---~~~~~~~--------~-~~~~i~~~S~SK~~-g~~G~RiG~l~~-- 327 (533)
T 3f6t_A 264 NALNAIKQAVEKNPKLMIISDEVYGAFVP-N---FKSIYSV--------V-PYNTMLVYSYSKLF-GCTGWRLGVIAL-- 327 (533)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECTTGGGST-T---CCCHHHH--------S-GGGEEEEEESHHHH-TCGGGCEEEEEE--
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCcccccc-C---ccCHhhc--------C-CCCEEEEecCcccC-CCcccceEEEEE--
Confidence 99999999999 68999999999998766 2 2344443 2 24789999999999 899999999996
Q ss_pred CChh-HHHHH------------------------------------Hhhhh-hcccCChHHHHHH----HHhcCCCCCCC
Q 041151 291 IPPK-TVDEI------------------------------------YKIAS-IALSPNVPAQIFM----GLMVNPLKPGD 328 (463)
Q Consensus 291 ~~~~-~~~~l------------------------------------~~~~~-~~~~~~~~~q~~~----~~~l~~~~~~~ 328 (463)
+++ +++.+ .+... ...+++.+.|.++ ..+|.... ++
T Consensus 328 -~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~-g~ 405 (533)
T 3f6t_A 328 -NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTST-NG 405 (533)
T ss_dssp -ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCB-GG
T ss_pred -CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhc-cc
Confidence 443 32222 22232 4567788888883 34442000 00
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc----CCCChHHHHHHHHH
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA----GKVPDVFYCLRLLE 404 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~ 404 (463)
+. ..++.+++++.|+++++.+.+.|. + ++.+..|++++|+|+++...........+. ...++.+++..+++
T Consensus 406 ~~---~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~ 480 (533)
T 3f6t_A 406 GS---DDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAE 480 (533)
T ss_dssp GT---BCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cc---hHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHH
Confidence 01 123455678899999999999998 6 788888999999997764100000000000 00135677788888
Q ss_pred hcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHHhccc
Q 041151 405 ATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQYEDY 457 (463)
Q Consensus 405 ~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~~~~~ 457 (463)
++||.+.||+.|+.+ .+++|||++ .+++++++++++|+++++++.++|+..
T Consensus 481 ~~GV~v~pg~~f~~~--~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~~~~~~ 532 (533)
T 3f6t_A 481 KNGVVLVDGVGFGAK--PGELRVSQANLPTEDYALIGKQVLELLKEYYEEFKQN 532 (533)
T ss_dssp HTTSSSCTTEEECSS--TTEEEEESSSSCHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hCCEEEeCCcccCCC--CCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999873 459999999 789999999999999999999999864
No 67
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=2.5e-39 Score=322.77 Aligned_cols=307 Identities=21% Similarity=0.251 Sum_probs=253.7
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----- 161 (463)
+++.+.+.. ....|++..|..+||+++++++. .+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 46 ~~~~~~~~~---~~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~ 116 (375)
T 3op7_A 46 EDFYKKLQG---TKLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQ 116 (375)
T ss_dssp HHHHHHHHT---SCCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCT
T ss_pred HHHHHHHhc---CCcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCch
Confidence 344455554 45789999999999999999873 2678999999999999999999998 999999997
Q ss_pred --------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 --------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 --------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|.++ ...++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|++||++
T Consensus 117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~ 189 (375)
T 3op7_A 117 QLYDIPKSLGAEVDLWQIEEENGWLPDL-EKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAY 189 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECH-HHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCE
T ss_pred hHHHHHHHcCCEEEEEeccccCCCCCCH-HHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 55555 244677899 999999986 899999999999999999999999999999999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA 306 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~ 306 (463)
||+||+|+.+.++ +..++... . +++++++||||++ |++|+|+||++ +++++++.+.+... ..
T Consensus 190 li~De~~~~~~~~---~~~~~~~~--------~--~~~i~~~s~sK~~-~~~G~r~G~v~---~~~~l~~~~~~~~~~~~ 252 (375)
T 3op7_A 190 ILSDEVYRSFSEL---DVPSIIEV--------Y--DKGIAVNSLSKTY-SLPGIRIGWVA---ANHQVTDILRDYRDYTM 252 (375)
T ss_dssp EEEECCSCCCSSS---CCCCHHHH--------C--TTEEEEEESSSSS-SCGGGCCEEEE---CCHHHHHHHTTTGGGTT
T ss_pred EEEEccccccccc---CCCchhhh--------c--CCEEEEeEChhhc-CCcccceEEEE---eCHHHHHHHHHHHhhhc
Confidence 9999999998762 33344332 2 3579999999999 89999999999 59999999988775 56
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~ 386 (463)
.+++.+.|.++..+++ ....+.++.++.++++++.+.+.|++.|++.+..+.++++.|+.++.+.
T Consensus 253 ~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 317 (375)
T 3op7_A 253 ICAGVFDDLVAQLALA----------HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM----- 317 (375)
T ss_dssp SCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-----
T ss_pred cCCCcHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-----
Confidence 7778899988888764 1233455678888999999999999988999888999999987776432
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..+++..+++++||.+.||..|+. .+++||+++.+.+++++++++|+++++++.
T Consensus 318 -------~~~~~~~~ll~~~gi~v~~g~~~~~---~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 318 -------PMEDFCLQLLQEHGVLLVPGNRFER---DGYVRLGFACEQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp -------CHHHHHHHHHHHHCEECEEGGGGTC---TTEEEECCCSCHHHHHHHHHHHHHHHGGGC
T ss_pred -------CHHHHHHHHHHhCCEEEeChhhhCC---CCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 2566677777899999999999875 348999999766899999999999987654
No 68
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=2.6e-39 Score=324.92 Aligned_cols=362 Identities=13% Similarity=0.088 Sum_probs=256.2
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
.++...+++.++.+...+.+. .++++|||+.|.+... . .+.+. ++.+.+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~------------------~-~~~~~-----~~~v~~a~~~~ 56 (396)
T 2q7w_A 3 ENITAAPADPILGLADLFRAD--ERPGKINLGIGVYKDE------------------T-GKTPV-----LTSVKKAEQYL 56 (396)
T ss_dssp TTCCCCCC-------------------CEESSCCSCCCT------------------T-SCCCC-----CHHHHHHHHHH
T ss_pred cccccCCCchHHHHHHHHhcc--CCCCceecccccccCC------------------C-CCccC-----cHHHHHHHHhh
Confidence 456677788777776655443 3467899999984210 0 00122 68888888877
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHHHHh-cCCCCEEEEc--------
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLNCVI-RGEGDGVVLL-------- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~-~~~gd~Vlvp-------- 161 (463)
+... ..++|++..|..+||+++++++...++.++++++|++ |+|+++++..++..+. ..+||+|+++
T Consensus 57 ~~~~--~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~ 134 (396)
T 2q7w_A 57 LENE--TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHK 134 (396)
T ss_dssp HHHC--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH
T ss_pred cCcc--cccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHH
Confidence 6652 4568988899999999999999655444456889998 9999999999997663 1699999997
Q ss_pred -----cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +. +++++|+ +.|++.+++. .++++++++++||||||.+++.+++++|+++|+++|++||+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (396)
T 2q7w_A 135 SVFNSAGLEVREYAYYDAENHTLDF-DALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210 (396)
T ss_dssp HHHHHTTCEEEEEECEETTTTEECH-HHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHcCCceEEEecccCCCCCcCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 56655 32 6788999 9999998741 11367888899999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh----hHHHHHHhhhh-h
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP----KTVDEIYKIAS-I 305 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~----~~~~~l~~~~~-~ 305 (463)
||+|..+.+++.....++..+... .+++|+++|+||++ |++|+|+||+++...++ ++++.+..... .
T Consensus 211 De~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (396)
T 2q7w_A 211 DFAYQGFARGLEEDAEGLRAFAAM-------HKELIVASSYSXNF-GLYNERVGACTLVAADSETVDRAFSQMKAAIRAN 282 (396)
T ss_dssp EESCTTSSSCHHHHTHHHHHHHHH-------CSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred ecccccccCCccchhHHHHHHHhc-------CCcEEEEEeccccc-cccccccceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 999999876210122234333211 23689999999999 89999999998300144 45555554433 2
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeeeccCChh
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~~~~~~~ 382 (463)
..+++.+.|.++..+|+.. .....+.++.+++++.++++++.+.+.|+++. ++.+..|++++|+|++++
T Consensus 283 ~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---- 354 (396)
T 2q7w_A 283 YSNPPAHGASVVATILSND----ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT---- 354 (396)
T ss_dssp TSSCCHHHHHHHHHHHTSH----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----
T ss_pred cCCCCcHHHHHHHHHhcCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----
Confidence 3455899999999988631 01112334566788899999999999999873 388888899999995432
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
. +.+..+++++||.+.|| +||+++ .+++++++++++|+++
T Consensus 355 ------------~-~~~~~~l~~~gv~v~~~-----------~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 355 ------------K-EQVLRLREEFGVYAVAS-----------GRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp ------------H-HHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred ------------H-HHHHHHHHhcCeeecCC-----------ceEEEeecCHHHHHHHHHHHHhc
Confidence 2 34667788899999873 699999 5889999999999875
No 69
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.5e-38 Score=316.28 Aligned_cols=318 Identities=17% Similarity=0.188 Sum_probs=257.4
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
.+++|+|+.|.+.+ +. |+.+++++.+.+... ....|++ .+..++|+++
T Consensus 29 ~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~~--~~~~y~~-~~~~~l~~~l 76 (367)
T 3euc_A 29 SHGLVKLDAMENPY------------------------RL-----PPALRSELAARLGEV--ALNRYPV-PSSEALRAKL 76 (367)
T ss_dssp CTTCEECCSSCCCC------------------------CC-----CHHHHHHHHHHHHHH--HTTCSCC-CCHHHHHHHH
T ss_pred CCCeeEccCCCCCC------------------------CC-----CHHHHHHHHHHhhhh--hhhcCCC-CcHHHHHHHH
Confidence 35689999998775 44 889999998887742 3467876 4789999999
Q ss_pred HHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHH
Q 041151 117 AEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIIND 178 (463)
Q Consensus 117 a~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~ 178 (463)
+++++ + ++++|++|+|+++++..++.+++ ++||+|+++ .|.++ ...++.+|+ +.
T Consensus 77 a~~~g------~~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~ 148 (367)
T 3euc_A 77 KEVMQ------VPAGMEVLLGNGSDEIISMLALAAA-RPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDR-GA 148 (367)
T ss_dssp HHHHT------CCTTCEEEEEEHHHHHHHHHHHHTC-CTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCH-HH
T ss_pred HHHhC------CCCcceEEEcCCHHHHHHHHHHHHc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCH-HH
Confidence 99985 4 67899999999999999999997 899999997 55555 334678999 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC--CeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
|++++++. ++++|++++||||||.+++.+++++|+++|++| |+++|+||+|..+.. . ..... +
T Consensus 149 l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~-~--~~~~~------~- 213 (367)
T 3euc_A 149 MLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ-E--SWMSR------L- 213 (367)
T ss_dssp HHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS-C--CSGGG------G-
T ss_pred HHHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc-c--chHHH------H-
Confidence 99999875 799999999999999999999999999999999 999999999998653 1 11111 1
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
+..++++++.|+||+ +++|+|+||++ +++++++.+.+... .++.+.+.|.++..+++. ..
T Consensus 214 ---~~~~~~i~~~s~sK~--~~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~-----------~~ 273 (367)
T 3euc_A 214 ---TDFGNLLVMRTVSKL--GLAGIRLGYVA---GDPQWLEQLDKVRP-PYNVNVLTEATALFALEH-----------VA 273 (367)
T ss_dssp ---GTCTTEEEEEECCCT--TSCSCCEEEEE---ECHHHHHHHGGGCC-SSCCCHHHHHHHHHHHTT-----------HH
T ss_pred ---hhCCCEEEEecchhh--cccccCceeee---eCHHHHHHHHHhCC-CCCCCHHHHHHHHHHhcC-----------HH
Confidence 334578999999997 67999999999 48889988877765 577899999999999862 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+.++.+++++++++.+.+.|+++||+.+. +.+++|+|++++ . ..++ ...|.++||.+++|..|
T Consensus 274 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--~-------------~~~l-~~~l~~~gi~v~~~~~~ 336 (367)
T 3euc_A 274 VLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--D-------------AAQT-FDRLLARKVLIKNVSKM 336 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--C-------------HHHH-HHHHHTTTEECEECGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--C-------------HHHH-HHHHHHCCeEEEECCcc
Confidence 45567888999999999999999899855 455667785543 1 3344 44578899999999988
Q ss_pred CCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 417 ~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+. ...+++||+++ +++++++++++|+++++
T Consensus 337 ~~-~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 337 HP-LLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CG-GGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CC-CCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 64 34569999998 67899999999988753
No 70
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=2.2e-42 Score=347.37 Aligned_cols=337 Identities=14% Similarity=0.175 Sum_probs=267.7
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
+++||+.|+|++ +. |+.+.+++.+++.. ....|++. ..++|+++++
T Consensus 32 ~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~l~~~la~ 77 (392)
T 3b1d_A 32 QLLPAWIADMDF------------------------EV-----MPEVKQAIHDYAEQ---LVYGYTYA--SDELLQAVLD 77 (392)
Confidence 799999999875 33 77888888887754 34678765 7899999999
Q ss_pred HHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---C-CcccChHHH
Q 041151 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---Q-QIGVLIIND 178 (463)
Q Consensus 119 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~-~~~~d~~~~ 178 (463)
++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. + .|.+|+ +.
T Consensus 78 ~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~-~~ 155 (392)
T 3b1d_A 78 WEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-KEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDF-EQ 155 (392)
Confidence 998888888889999999999999999999997 899999997 34444 22 1 355899 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
|++.+++. ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ +....++..+.+++
T Consensus 156 l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~--- 226 (392)
T 3b1d_A 156 LENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF-GHEHVSFNTVSPDF--- 226 (392)
Confidence 99998732 7899999999999999999999999999999999999999999998873 33344444432111
Q ss_pred CCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc-ccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 259 FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 259 ~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
.+++++++||||++ |++|+|+||+++ .++++++.+.+... .+ .+++.+.|.++.++|+.. ..
T Consensus 227 ---~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~ 290 (392)
T 3b1d_A 227 ---KDFALVLSSATKTF-NIAGTKNSYAII--ENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG----------KP 290 (392)
Confidence 35789999999999 899999999994 23458888877765 22 356888999888887521 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
+.+++++.++++++.+.+.|++ +||+.+..+++++++|++++.. + .+..+++..+++++||.+.||..
T Consensus 291 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~----------~~~~~l~~~l~~~~gi~v~~g~~ 359 (392)
T 3b1d_A 291 WLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-G----------LTDDALFTLLHDQAKVILNRGSD 359 (392)
Confidence 3456788899999999999988 7899999999999999655311 1 02344555555688999999999
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
|+. .+.+++||+++.+++++++++++|+++++
T Consensus 360 f~~-~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 360 YGS-EGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 974 35568999999778999999999998775
No 71
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=1.4e-37 Score=309.11 Aligned_cols=324 Identities=13% Similarity=0.144 Sum_probs=247.2
Q ss_pred HHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHH
Q 041151 32 ELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPG 111 (463)
Q Consensus 32 ~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~ 111 (463)
+...+|+++|||+.|.+.+ +. |+.+++++.+.+.. ...|++ .|..+
T Consensus 18 ~~~~~~~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~~-~~~~~ 63 (364)
T 1lc5_A 18 VLGISPDQLLDFSANINPL------------------------GM-----PVSVKRALIDNLDC----IERYPD-ADYFH 63 (364)
T ss_dssp HHTSCGGGSEECSSCCCTT------------------------CC-----CHHHHHHHHHTGGG----GGSCCC-TTCHH
T ss_pred hcCCCccceEEeccccCCC------------------------CC-----CHHHHHHHHHHHHH----hhcCCC-CCHHH
Confidence 3344567799999998663 22 78899888887754 357865 47899
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---CCcc
Q 041151 112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---QQIG 172 (463)
Q Consensus 112 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~~~~ 172 (463)
+|++++++++ +++++|++|+|+++++..++.++ +||+|+++ .|.++ +. +++.
T Consensus 64 l~~~la~~~~------~~~~~v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 134 (364)
T 1lc5_A 64 LHQALARHHQ------VPASWILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQ 134 (364)
T ss_dssp HHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHH---CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred HHHHHHHHHC------cCHHHEEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccc
Confidence 9999999995 67889999999999999999988 46999997 55555 22 2333
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
+ + +.+.+.+.+ ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ +.+... +
T Consensus 135 ~-l-~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~---~- 201 (364)
T 1lc5_A 135 L-T-DAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH-ETGFIP---A- 201 (364)
T ss_dssp C-C-TTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT-CCCSGG---G-
T ss_pred h-h-HHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC-ccchhh---H-
Confidence 3 4 555554433 7899999999999999999999999999999999999999999988762 222111 1
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
+ +..+++++++|+||++ |++|+|+||+++ +++++++.+..... +++++.+.|.++.++|+.
T Consensus 202 --~----~~~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~--------- 262 (364)
T 1lc5_A 202 --L----KDNPHIWVLRSLTKFY-AIPGLRLGYLVN--SDDAAMARMRRQQM-PWSVNALAALAGEVALQD--------- 262 (364)
T ss_dssp --C----TTCTTEEEEEESTTTT-TCTTTCCEEEEC--CCHHHHHHHHHHSC-TTCSCHHHHHHHHHGGGC---------
T ss_pred --h----ccCCCEEEEEECchhh-cCCccceEEEEE--CCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhC---------
Confidence 1 2334689999999999 899999999994 48899998887765 678899999999999852
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
..+.++.++.++++++.+.+.|+++||+.+.++.| .|+|++++ .. ..++... |.++||.+.|
T Consensus 263 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~--~~------------~~~l~~~-l~~~gi~v~~ 324 (364)
T 1lc5_A 263 --SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRA-NYLLLRCE--RE------------DIDLQRR-LLTQRILIRS 324 (364)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSS-SEEEEEES--CT------------TCCHHHH-HHTTTEECEE
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCC-eEEEEECC--Cc------------HHHHHHH-HHHCCcEEee
Confidence 13455678889999999999999888888776554 55675543 11 2233444 5567999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|..|+.. +.+++||+++. .++++++++.|+++++++
T Consensus 325 g~~~~~~-~~~~iRis~~~-~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 325 CANYPGL-DSRYYRVAIRS-AAQNERLLAALRNVLTGI 360 (364)
T ss_dssp CTTSTTC-CTTEEEEECCC-HHHHHHHHHHHHHHC---
T ss_pred CcccCCC-CCCEEEEEeCC-HHHHHHHHHHHHHHhhcc
Confidence 9998642 45699999985 578888888888877654
No 72
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=5.2e-39 Score=322.77 Aligned_cols=320 Identities=12% Similarity=0.138 Sum_probs=235.8
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhh-hcCCCCCccCCCCCC-----
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLS-LTSGGLGAYSDSRGI----- 109 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~-~~~~~~~~Y~~~~g~----- 109 (463)
.+.++|+|+.|.|+. +. |+.+.+++.+... .......+|++..|.
T Consensus 20 ~~~~~i~l~~g~p~~------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~ 70 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTA------------------------YE-----EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLE 70 (391)
T ss_dssp TTTSCEECSSCCCGG------------------------GH-----HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSC
T ss_pred CCCCeeEcCCCCCCC------------------------CC-----CHHHHHhHHHHhhcCccchhhcCCCCCCcccccC
Confidence 466799999999985 22 4334443322221 111245789999998
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCC----EEEEc-------------cCceecCCCc
Q 041151 110 PGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGD----GVVLL-------------FHTTWKRQQI 171 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd----~Vlvp-------------~g~~~~~~~~ 171 (463)
++||+++|+|++ .+|+.+++ ++|++|+|+++++..++.+++ ++|| +|+++ .|.++ ..+
T Consensus 71 ~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~--~~~ 146 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALS-SLARSQPVSVVAAAPFYSTYVEETTYVRSGM--YKW 146 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-HTSSSSSEEEEECSSCCTHHHHHHHTTCBTT--EEE
T ss_pred HHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCCCcceEEEcCCCchhHHHHHHHcCCeE--EEe
Confidence 999999999997 67888877 599999999999999999998 8999 99997 34443 012
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC--eEEEecccccccccCCCCCccchH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN--LVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~--~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
.+|. +.++ .+ ++++|++++||||||.+++ +|++ ++++ ++||+||+|.+ +. ..++.
T Consensus 147 ~~d~-~~l~---~~------~~k~v~l~~p~NPtG~~~~-----~l~~--~~~~~~~~ii~De~y~~----~~--~~~l~ 203 (391)
T 3bwn_A 147 EGDA-WGFD---KK------GPYIELVTSPNNPDGTIRE-----TVVN--RPDDDEAKVIHDFAYYW----PH--YTPIT 203 (391)
T ss_dssp EEES-TTCC---CC------SCEEEEEESSCTTTCCCCC-----CCC-------CCCEEEEECTTCS----TT--TSCCC
T ss_pred cCCH-HHcC---CC------CCEEEEECCCCCCCchhHH-----HHHH--HhhcCCCEEEEeCCCCC----CC--CCccc
Confidence 2233 3332 12 7899999999999999997 3433 2255 99999999973 11 11221
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
...+++|+++||||+| |++|+|+||+++ +++++++.+.+... ..++++.+.|.++..+|+..
T Consensus 204 ----------~~~~~~i~~~S~SK~~-g~~GlRiG~~~~--~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---- 266 (391)
T 3bwn_A 204 ----------RRQDHDIMLFTFSKIT-GHAGSRIGWALV--KDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVL---- 266 (391)
T ss_dssp ----------CCBCCSEEEEEHHHHH-SCGGGCEEEEEE--CCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH----
T ss_pred ----------cCCCCeEEEEechhhc-CCCccceEEEEe--cCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCc----
Confidence 1124689999999999 999999999985 48899999988876 56889999999999988521
Q ss_pred chHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-------------CceeEEeeeccCChhhHHHHh
Q 041151 329 ISYEQ-------FVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-------------EGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 329 ~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~ 388 (463)
.. +.++.+++++.|+++++.+.+.|+++||+.+..| .+|+|+|++++ .
T Consensus 267 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~--~------- 334 (391)
T 3bwn_A 267 ---KETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK--E------- 334 (391)
T ss_dssp ---HHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEES--S-------
T ss_pred ---chhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCC--c-------
Confidence 00 0234667899999999999999998877776544 44568896664 1
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
. +.+..+|+++||.++||+.|+. +.+++|||++.+++++++++++|++++++
T Consensus 335 ------~-~~~~~~l~~~gV~v~pg~~fg~--~~~~iRis~~~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 335 ------E-TDLVSELRRHKVMSRAGERCGS--DKKHVRVSMLSREDVFNVFLERLANMKLI 386 (391)
T ss_dssp ------S-CCHHHHHHHTTEECEEGGGGTC--CTTEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred ------H-HHHHHHHHHCCEEEccCCCCCC--CCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 1 2355678899999999999975 45699999998888999999999988754
No 73
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=7.3e-38 Score=314.28 Aligned_cols=360 Identities=16% Similarity=0.081 Sum_probs=263.4
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
.+++...+++.++.+...+.+. .++++|||+.|.|.... .+.+. ++.+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~-------------------~~~~~-----~~~v~~a~~~ 55 (394)
T 2ay1_A 2 LGNLKPQAPDKILALMGEFRAD--PRQGKIDLGVGVYKDAT-------------------GHTPI-----MRAVHAAEQR 55 (394)
T ss_dssp GGGCCCCCCCSHHHHHHHHHHC--CCTTCEECCCCSCCCTT-------------------SCCCC-----CHHHHHHHHH
T ss_pred CccCccCCCccHHHHHHHHHhC--CCccccccccceeeCCC-------------------CCccC-----cHHHHHHHHH
Confidence 3567778888888776655433 35679999999863100 00122 6888888887
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHHHHhc-CCCCEEEEc-------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLNCVIR-GEGDGVVLL------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~~-~~gd~Vlvp------- 161 (463)
.+.. ...++|++..|..++|+++++++... .+++++|++ |+|+++++..++..+.. .+||+|+++
T Consensus 56 ~~~~--~~~~~y~~~~g~~~lr~~la~~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~ 130 (394)
T 2ay1_A 56 MLET--ETTKTYAGLSGEPEFQKAMGELILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNH 130 (394)
T ss_dssp HHHH--CCCCCCCCSSCCHHHHHHHHHHHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHH
T ss_pred hcCC--cccCCCCCCCCcHHHHHHHHHHHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhH
Confidence 7664 24568998899999999999998422 236789999 99999999999988751 399999997
Q ss_pred ------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +. +++++|+ +.|++.+++. .++++++++++||||||.+++.+++++|+++|+++|++||
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li 206 (394)
T 2ay1_A 131 VSIMNFMGLPVQTYRYFDAETRGVDF-EGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPL 206 (394)
T ss_dssp HHHHHHHTCCEEEEECEETTTTEECH-HHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHcCCceEEEecccccCCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45555 22 6788999 9999998751 0135677778999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH----HHhhhh-
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE----IYKIAS- 304 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~----l~~~~~- 304 (463)
+||+|..+.+++.....++..+. .. . +++|+++|+||++ |++|+|+||+++...++++++. +.+...
T Consensus 207 ~De~~~~~~~~~~~~~~~~~~~~-~~----~--~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (394)
T 2ay1_A 207 IDLAYQGFGDGLEEDAAGTRLIA-SR----I--PEVLIAASCSKNF-GIYRERTGCLLALCADAATRELAQGAMAFLNRQ 278 (394)
T ss_dssp EEECCTTSSSCHHHHHHHHHHHH-HH----C--SSEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EecCccccccCcccchHHHHHHh-hc----C--CCEEEEEeccCCC-cCcCCccceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 99999987662100122333231 11 2 2589999999999 8999999999831015555444 332222
Q ss_pred hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeeeccCCh
Q 041151 305 IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 305 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~~~~~~ 381 (463)
...+++.+.|.++..+|+.. .....+.++.++++++++++++.+.+.|++++ ++.+..|++++|+|++++
T Consensus 279 ~~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~--- 351 (394)
T 2ay1_A 279 TYSFPPFHGAKIVSTVLTTP----ELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT--- 351 (394)
T ss_dssp TTSSCCCHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC---
T ss_pred hcCCCChHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC---
Confidence 23445899999998887521 01112334567788999999999999998862 488888889999995432
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
. +.+..+++++||.+.|| +||+++ .+++++++++++|+++
T Consensus 352 -------------~-~~~~~~l~~~gi~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 352 -------------P-EQVKRIKEEFGIYMVGD-----------SRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp -------------H-HHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred -------------H-HHHHHHHHhCCEEecCC-----------CeEEeecCCHhhHHHHHHHHHHc
Confidence 2 23567788899999873 599998 6899999999999875
No 74
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=1.8e-37 Score=307.61 Aligned_cols=285 Identities=16% Similarity=0.261 Sum_probs=227.3
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEEc-------------cCc
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVLL-------------FHT 164 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlvp-------------~g~ 164 (463)
....|++. +..++|+++|++++ +++++|++|+|+++++..++.+++ ++| |+|+++ .|.
T Consensus 51 ~~~~Y~~~-~~~~lr~~la~~~~------~~~~~v~~~~G~~~ai~~~~~~~~-~~g~d~Vl~~~p~~~~~~~~~~~~g~ 122 (356)
T 1fg7_A 51 TLNRYPEC-QPKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGV 122 (356)
T ss_dssp CTTSCCCS-SCHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTC
T ss_pred hhccCCCc-cHHHHHHHHHHHhC------CChHHEEEcCCHHHHHHHHHHHHh-CCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 35689876 48999999999995 678899999999999999999997 899 999997 566
Q ss_pred ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 165 TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 165 ~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
++ ...++.+|+ +.++++++ ++++|++++||||||.+++.+++++|+++|+ +|++||+||+|.++..
T Consensus 123 ~~~~v~~~~~~~~d~-~~l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~- 192 (356)
T 1fg7_A 123 ECRTVPTLDNWQLDL-QGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP- 192 (356)
T ss_dssp EEEECCCCTTSCCCH-HHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG-
T ss_pred EEEEeeCCCCCCCCH-HHHHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC-
Confidence 65 234578999 99988764 4899999999999999999999999999999 9999999999998642
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHh
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLM 320 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 320 (463)
. .++..+. +..+++++++||||+| |++|+|+||++ +++++++.+.+... .++++.+.|.++.++
T Consensus 193 -~---~~~~~~~-------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~-~~~~~~~~~~a~~~~ 256 (356)
T 1fg7_A 193 -Q---ASLAGWL-------AEYPHLAILRTLSKAF-ALAGLRCGFTL---ANEEVINLLMKVIA-PYPLSTPVADIAAQA 256 (356)
T ss_dssp -G---GCSGGGT-------TTCTTEEEEEESSSTT-CCGGGCCEEEE---ECHHHHHHHHHHSC-SSCSCHHHHHHHHHH
T ss_pred -C---CcHHHHH-------hhCCCEEEEecchHhh-cCchhhhEEEE---eCHHHHHHHHHhcC-CCCCCHHHHHHHHHH
Confidence 1 1222221 2234689999999999 99999999999 48999999988766 557899999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHH
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (463)
++. .. + .+.++.+++++++++.+.+.|++++++....|.+++|+|++++ . ..++..
T Consensus 257 l~~-----~~---~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~l~~ 312 (356)
T 1fg7_A 257 LSP-----QG---I-VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--A-------------SSAVFK 312 (356)
T ss_dssp TSH-----HH---H-HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--T-------------HHHHHH
T ss_pred hcC-----cc---H-HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--C-------------HHHHHH
Confidence 852 11 1 2356678889999999999999986543344567778886654 1 344444
Q ss_pred HHHHhcCeEeeC-CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 401 RLLEATGISTVP-GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 401 ~ll~~~gI~v~p-g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
. |.++||.++| |..|+.. +++||+++. ++++++++++|+++
T Consensus 313 ~-L~~~gI~v~~~g~~~~~~---~~iRis~~~-~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 313 S-LWDQGIILRDQNKQPSLS---GCLRITVGT-REESQRVIDALRAE 354 (356)
T ss_dssp H-HHHTTEECEECTTSTTCT---TEEEEECCC-HHHHHHHHHHHHTC
T ss_pred H-HHHCCEEEEECCCCCCCC---CeEEEEeCC-HHHHHHHHHHHHhh
Confidence 4 5789999999 8888752 389999985 58899999888753
No 75
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=4.8e-37 Score=304.45 Aligned_cols=319 Identities=13% Similarity=0.152 Sum_probs=248.5
Q ss_pred HhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHH
Q 041151 35 KEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRK 114 (463)
Q Consensus 35 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~ 114 (463)
.+++++|||+.|.+.. +. |+.+++++.+.+.. ...|+. .+..++|+
T Consensus 23 ~~~~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~~-~~~~~l~~ 68 (361)
T 3ftb_A 23 FKGRELLDYSSNINPL------------------------GI-----PKSFLNNIDEGIKN----LGVYPD-VNYRRLNK 68 (361)
T ss_dssp -----CEETTCCCCTT------------------------CS-----CHHHHTTHHHHHHG----GGSCCC-TTCHHHHH
T ss_pred cCCCCEEEecCCCCCC------------------------CC-----CHHHHHHHHHHHHH----hcCCCC-ccHHHHHH
Confidence 3677899999997764 33 88999999888775 256754 67899999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-CCCcccChHH
Q 041151 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-RQQIGVLIIN 177 (463)
Q Consensus 115 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-~~~~~~d~~~ 177 (463)
+++++++ +++++|++|+|+++++..++.++ |+|+++ .|.++ + ....++++ +
T Consensus 69 ~la~~~~------~~~~~i~~~~g~t~al~~~~~~~-----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~ 136 (361)
T 3ftb_A 69 SIENYLK------LKDIGIVLGNGASEIIELSISLF-----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDY-E 136 (361)
T ss_dssp HHHHHHT------CCSCEEEEESSHHHHHHHHHTTC-----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCH-H
T ss_pred HHHHHhC------CCcceEEEcCCHHHHHHHHHHHc-----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCH-H
Confidence 9999995 78899999999999999998876 888886 56665 2 33457888 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.+++.+++ +++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.++ .. .+.... .
T Consensus 137 ~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~-~~~~~~---~-- 201 (361)
T 3ftb_A 137 DIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD--PS-SSFVGE---I-- 201 (361)
T ss_dssp HHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC--TT-SSSGGG---T--
T ss_pred HHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC--cc-cchhHh---c--
Confidence 99988763 799999999999999999999999999999999999999999998773 21 222221 1
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 337 (463)
...+++++++|+||.+ |++|+|+||+++ +++++++.+..... .++++.+.|.++.++++. .++
T Consensus 202 --~~~~~~i~~~s~sK~~-~~~G~r~g~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-----------~~~ 264 (361)
T 3ftb_A 202 --KNYSCLFIIRAMTKFF-AMPGIRFGYGIT--NNKEIAAKIKAKQN-PWNINCFAEMAAINCLKD-----------TNY 264 (361)
T ss_dssp --TTCSSEEEEEESSSTT-SCGGGCCEEEEE--SCHHHHHHHHTTSC-TTCSCHHHHHHHHHTSSC-----------HHH
T ss_pred --ccCCCEEEEeeChhhc-CCCCcceeEEEe--CCHHHHHHHHhhCC-CCCCCHHHHHHHHHHhcC-----------HHH
Confidence 3345789999999999 899999999986 68999999988776 578899999999999862 234
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 338 SKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
.++.+++++++++.+.+.|+++|++. +.++.|+ |+|+.++ . .+..++... |.++||.+.||..|
T Consensus 265 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~--~-----------~~~~~l~~~-l~~~gi~v~~g~~~ 329 (361)
T 3ftb_A 265 IEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLE--N-----------ISGEKLYDS-LLKEDIVIRRCCNF 329 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEES--S-----------SCHHHHHHH-HHTTTEECEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcC--C-----------CCHHHHHHH-HHHCCeEEeeCccC
Confidence 55678889999999999999998888 6766665 4564443 2 124454444 55669999999999
Q ss_pred CCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 417 ~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+. .+.+++||+++ +.++++++++.|+++.+
T Consensus 330 ~~-~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 330 IG-LDDSFVRFAIK-DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp TT-CCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 75 34569999998 44677777777766553
No 76
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=8.2e-39 Score=324.84 Aligned_cols=308 Identities=13% Similarity=0.087 Sum_probs=235.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCC-C---CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSR-G---IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV------- 150 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~-g---~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l------- 150 (463)
|+.+.+++.+++.........|++.. | .++||++||+|++++++..+++++|++|+|+++++..++.++
T Consensus 71 ~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~ 150 (427)
T 2hox_A 71 EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTAT 150 (427)
T ss_dssp HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTC
T ss_pred CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccc
Confidence 56667777776643211234599888 9 999999999999987777788999999999999999999999
Q ss_pred -hcCCCCEEEEc-------------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 151 -IRGEGDGVVLL-------------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 151 -~~~~gd~Vlvp-------------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+ +|||.|+++ .|+++ ..+.+|+ +.|++.+++ ++|+|++++||||||.+++ +
T Consensus 151 ~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~~--~~~~~d~-~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~---- 215 (427)
T 2hox_A 151 PD-APESKVVAHAPFYPVFREQTKYFDKKG--YVWAGNA-ANYVNVSNP------EQYIEMVTSPNNPEGLLRH-A---- 215 (427)
T ss_dssp TT-SCCEEEEECSSCCHHHHHHHHHSCBTT--EEEEEEG-GGGTTCSCG------GGEEEEEESSCTTTCCCCC-C----
T ss_pred cC-CCCCEEEEeCCCcccHHHHHHHcCCee--eeecCCH-HHHHHhhcC------CceEEEEcCCCCCcccccH-H----
Confidence 8 899999997 33333 2467888 999887765 7899999999999999999 4
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
+++ ++.+++|++|.+ + ..++..+ . .+++|+++||||.+ |++|+|+||+++ .+++++
T Consensus 216 ---~l~--~~~~i~d~~~~~-----~--~~s~~~~--------~-~~~~i~~~S~SK~~-g~~G~RiG~~~~--~~~~l~ 271 (427)
T 2hox_A 216 ---VIK--GCKSIYDMVYYW-----P--HYTPIKY--------K-ADEDILLFTMSKFT-GHSGSRFGWALI--KDESVY 271 (427)
T ss_dssp ---SST--TCEEEEECTTCS-----T--TTSCCCS--------C-BCCSEEEEEHHHHT-SCGGGCCEEEEE--CCHHHH
T ss_pred ---HHc--CCCEEEeecccC-----C--CCCcccc--------C-CCceEEEEeChhcC-CCCCceEEEEEE--CCHHHH
Confidence 222 455666766632 1 1222211 2 34789999999999 999999999995 358999
Q ss_pred HHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc------
Q 041151 297 DEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE-----QFVRESKGILESLRRRARMMTDGFNSCRNVVC------ 364 (463)
Q Consensus 297 ~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~------ 364 (463)
+.+.+... ..++++.+.|.++..+|++.. .+- .+.++.+..++.|+++++.+.+.|+++||+.+
T Consensus 272 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 347 (427)
T 2hox_A 272 NNLLNYMTKNTEGTPRETQLRSLKVLKEVV----AMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQS 347 (427)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhcch----hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccc
Confidence 99988876 567899999999988875210 000 01234556788899999999999998766654
Q ss_pred --------ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 365 --------NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 365 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
..|++++|+|++++. ++.+++..+++++||.++||+.|+. +.+++|||++.+++++
T Consensus 348 ~~~~~~~~~~p~~g~f~~~~~~~--------------~~~~~~~~ll~~~gI~v~pg~~f~~--~~~~~Ris~~~~~e~l 411 (427)
T 2hox_A 348 EYCNYFRRMRPPSPSYAWVKCEW--------------EEDKDCYQTFQNGRINTQNGVGFEA--SSRYVRLSLIKTQDDF 411 (427)
T ss_dssp EEETTTTEEECCCCSEEEEEECS--------------GGGCSHHHHHHHTTEECEEGGGGTS--CTTEEEEECSSCHHHH
T ss_pred cccccccccCCCCceEEEEECCC--------------cHHHHHHHHHHHCCEEEcCCCccCC--CCCEEEEEecCCHHHH
Confidence 356789999977652 1334566777889999999999986 4569999999888899
Q ss_pred HHHHHHHHHHHH
Q 041151 437 PAIMESFKKFND 448 (463)
Q Consensus 437 ~~~~~~l~~~l~ 448 (463)
++++++|+++++
T Consensus 412 ~~~l~~l~~~~~ 423 (427)
T 2hox_A 412 DQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
No 77
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=5.9e-36 Score=298.00 Aligned_cols=304 Identities=18% Similarity=0.239 Sum_probs=239.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+.+++.+.+.........|++..+ .++|+++++++.+.+|+.+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~-~~gd~Vl~~ 122 (369)
T 3cq5_A 45 SEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG-GPGRTALGF 122 (369)
T ss_dssp CHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-STTCEEEEE
T ss_pred CHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc-CCCCEEEEc
Confidence 889999998887652123567887666 799999999999888888889999999999999999999997 899999997
Q ss_pred -------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|.++ .+.++.+|+ +.|++.+++. ++++|++++||||||.+++.+++.+|++.|
T Consensus 123 ~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~--- 193 (369)
T 3cq5_A 123 QPSYSMHPILAKGTHTEFIAVSRGADFRIDM-DVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVA--- 193 (369)
T ss_dssp ESSCTHHHHHHHHTTCEEEEEECCTTSSCCH-HHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHC---
T ss_pred CCChHHHHHHHHHcCCEEEEecCCcCCCCCH-HHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---
Confidence 56555 334568999 9999999864 689999999999999999988888777754
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCc-eEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEV-QLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
+++||+||+|+.+.+ + .+...+. +..+ ++++++|+||++ |++|+|+||+++ ++++++.+....
T Consensus 194 ~~~li~De~~~~~~~-~----~~~~~~~-------~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~ 257 (369)
T 3cq5_A 194 PGIVIVDEAYAEFSP-S----PSATTLL-------EKYPTKLVVSRTMSKAF-DFAGGRLGYFVA---NPAFIDAVMLVR 257 (369)
T ss_dssp SSEEEEECTTGGGCC-S----CCGGGGT-------TTCTTTEEEEEESSSTT-SCGGGCCEEEEE---CTHHHHHHHTTS
T ss_pred CCEEEEECCchhhcC-C----cchHHHH-------hhCCCCEEEEEechHhc-CCcccceEEEEe---CHHHHHHHHHcC
Confidence 599999999998765 2 1222221 2233 689999999999 889999999995 788888887766
Q ss_pred hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 304 SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 304 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
. .++++.+.|.++.++++. ..+.++.+++++++++.+.+.|++. |+.+.++. +.|+|++++ .
T Consensus 258 ~-~~~~~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~--~-- 319 (369)
T 3cq5_A 258 L-PYHLSALSQAAAIVALRH-----------SADTLGTVEKLSVERVRVAARLEEL-GYAVVPSE-SNFVFFGDF--S-- 319 (369)
T ss_dssp C-TTCSCHHHHHHHHHHHHT-----------HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECCS-SSEEEEECC--S--
T ss_pred C-CCCCCHHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCC-CeEEEEECC--C--
Confidence 5 567899999999888741 2345567888999999999999885 88877554 456775443 1
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+..++. +.|.++||.+.|| + ..+++||+++ +++++++++++|+++++
T Consensus 320 ----------~~~~l~-~~l~~~gi~v~~~---~---~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 320 ----------DQHAAW-QAFLDRGVLIRDV---G---IAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp ----------SHHHHH-HHHHHTTEECBCC---S---CTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred ----------CHHHHH-HHHHHCCEEEEEC---C---CCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 134444 4467889999998 2 1348999999 66899999999988763
No 78
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=1.2e-36 Score=301.99 Aligned_cols=339 Identities=16% Similarity=0.160 Sum_probs=251.2
Q ss_pred ChhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 7 DYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
+.+.+++++..++++..+.. ..+++++|+|+.|+|++ +. |+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~ 45 (360)
T 3hdo_A 2 SLIPLRQNIASMKGYIPGYQ-------PPDIASWIKLNTNENPY------------------------PP-----SPEVV 45 (360)
T ss_dssp --CCCCHHHHHCCCCCCCCC-------CSCCTTSEECSSCCCSS------------------------CC-----CHHHH
T ss_pred CchhhHHHHHhcCCcCCCCC-------CccccceeeccCCCCCC------------------------CC-----CHHHH
Confidence 34457777888777765432 12567899999999885 44 88999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----- 161 (463)
+++.+.+.........|++. +..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 46 ~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~g------~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~ 117 (360)
T 3hdo_A 46 KAILEELGPDGAALRIYPSA-SSQKLREVAGELYG------FDPSWIIMANGSDEVLNNLIRAFA-AEGEEIGYVHPSYS 117 (360)
T ss_dssp HHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCT
T ss_pred HHHHHHHhcccchhhcCCCC-chHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHHHHh-CCCCEEEEcCCChH
Confidence 99998887621125678765 56999999999995 788999999999999999999997 899999997
Q ss_pred --------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 --------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 --------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +.+ ...++ +.+++. .++++|++++|+||||.+++.+++.+ +|+++|++||+
T Consensus 118 ~~~~~~~~~g~~~~~v~~~-~~~~~-~~l~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~---l~~~~~~~li~ 184 (360)
T 3hdo_A 118 YYGTLAEVQGARVRTFGLT-GDFRI-AGFPER--------YEGKVFFLTTPNAPLGPSFPLEYIDE---LARRCAGMLVL 184 (360)
T ss_dssp HHHHHHHHHTCEEEEECBC-TTSSB-TTCCSS--------BCSSEEEEESSCTTTCCCCCHHHHHH---HHHHBSSEEEE
T ss_pred HHHHHHHHCCCEEEEeeCC-CCCCH-HHHHhh--------cCCCEEEEeCCCCCCCCCcCHHHHHH---HHHHCCCEEEE
Confidence 55555 221 11233 333221 14679999999999999999776555 55688999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPN 310 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (463)
||+|+.+.. ....++. +..+++++++|+||++ |++|+|+||++ +++++++.+..... .++++
T Consensus 185 De~~~~~~~---~~~~~~~----------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~ 246 (360)
T 3hdo_A 185 DETYAEFAE---SNALELV----------RRHENVVVTRTLSKSY-SLAGMRIGLAI---ARPEVIAALDKIRD-HYNLD 246 (360)
T ss_dssp ECTTGGGSS---CCCTHHH----------HHCSSEEEEEESTTTT-SCTTSCCEEEE---CCHHHHHHHHHHSC-SCCSC
T ss_pred ECChHhhCC---cchhHHh----------ccCCCEEEEecchHhh-cCCccceeeEe---eCHHHHHHHHHhCC-CCCCC
Confidence 999998522 2222222 1124689999999999 89999999999 59999999988776 57889
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+|+. ..+.++.+++++++++.+.+.|+++ |+.+.++.+ .|+|+.+ +..
T Consensus 247 ~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~-~~~~~~~--~~~-------- 303 (360)
T 3hdo_A 247 RLAQAACVAALRD-----------QAYLSECCRRIRETREWFTTELRSI-GYDVIPSQG-NYLFATP--PDR-------- 303 (360)
T ss_dssp HHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSS-SEEEEEC--TTC--------
T ss_pred HHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCCc-cEEEEEC--CCC--------
Confidence 9999999988752 2345567888999999999999998 888776555 4566433 321
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..++ .+.|.++||.++++..++ ..+++||+++ +++++++++++|+++.+.+-
T Consensus 304 ---~~~~l-~~~l~~~gi~v~~~~~~~---~~~~iRis~~-~~~e~~~l~~al~~~~~~~~ 356 (360)
T 3hdo_A 304 ---DGKRV-YDGLYARKVLVRHFSDPL---LAHGMRISIG-TREEMEQTLAALKEIGEGHH 356 (360)
T ss_dssp ---CHHHH-HHHHHHTTEECBCCCSTT---TTTSEEEECC-CHHHHHHHHHHHHHHHC---
T ss_pred ---CHHHH-HHHHHHCCEEEEECCCCC---CCCEEEEEcC-CHHHHHHHHHHHHHHhcccc
Confidence 23444 456778899999977632 3458999999 56899999999887765543
No 79
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1e-35 Score=292.00 Aligned_cols=307 Identities=18% Similarity=0.201 Sum_probs=236.0
Q ss_pred HHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHH
Q 041151 33 LQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGV 112 (463)
Q Consensus 33 ~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~l 112 (463)
..+..+++|+|+.+.+.+ |. |+.+.+++.+.+.. ...|+ ..|..+|
T Consensus 11 ~~~~~~~~i~l~~n~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~-~~~~~~l 56 (337)
T 3p1t_A 11 EVRAAAQAVCLAFNENPE------------------------AV-----EPRVQAAIAAAAAR----INRYP-FDAEPRV 56 (337)
T ss_dssp ---CCCCCEECSSCCCCS------------------------CC-----CHHHHHHHHHHGGG----TTSCC-TTHHHHH
T ss_pred cccCCCCceEeeCCCCCC------------------------CC-----CHHHHHHHHHhhhh----hccCC-CCchHHH
Confidence 344566799999996543 33 88899988887764 36785 4688999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccCh
Q 041151 113 RKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLI 175 (463)
Q Consensus 113 r~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~ 175 (463)
|++++++++ +++++|++|+|+++++..++.++ +||+|+++ .|.++ ...++++|+
T Consensus 57 r~~la~~~~------~~~~~i~~t~G~~~~l~~~~~~~---~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~ 127 (337)
T 3p1t_A 57 MRKLAEHFS------CPEDNLMLVRGIDECFDRISAEF---SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDP 127 (337)
T ss_dssp HHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHS---TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCH
T ss_pred HHHHHHHhC------cCHHHEEEeCCHHHHHHHHHHhc---CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCH
Confidence 999999996 77889999999999999999986 79999997 56665 345678999
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhc
Q 041151 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255 (463)
Q Consensus 176 ~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+.|++. . ++++|++++||||||.+++.+++.+|++ ++++ +|+||+|+.+.+. ... ..
T Consensus 128 -~~l~~~--~------~~~~v~i~~p~nptG~~~~~~~l~~l~~---~~~~-~ivDea~~~~~~~-~~~--~~------- 184 (337)
T 3p1t_A 128 -NDLAQV--S------RDDCVVLANPSNPTGQALSAGELDQLRQ---RAGK-LLIDETYVDYSSF-RAR--GL------- 184 (337)
T ss_dssp -HHHTTC--C------TTEEEEEESSCTTTCCCCCHHHHHHHHH---HCSE-EEEECTTGGGSSC-SSS--CC-------
T ss_pred -HHHHhh--c------CCCEEEEeCCCCCCCCCCCHHHHHHHHH---hCCc-EEEECCChhhccc-ccc--cc-------
Confidence 999875 2 6799999999999999999887776654 6776 5669999986542 111 11
Q ss_pred CCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 256 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
...+++|+++|+||++ |++|+|+||++ +++++++.+.+... .++++.+.|.++..+++..
T Consensus 185 ----~~~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~-~~~~~~~~~~a~~~~l~~~----------- 244 (337)
T 3p1t_A 185 ----AYGENELVFRSFSKSY-GLAGLRLGALF---GPSELIAAMKRKQW-FCNVGTLDLHALEAALDND----------- 244 (337)
T ss_dssp ----CCBTTEEEEEESSSTT-CCTTTCCEEEE---CCHHHHHHHHTTSC-TTCSCHHHHHHHHHHHTCH-----------
T ss_pred ----ccCCCEEEEeeCchhc-cCcchheEEEE---eCHHHHHHHHhhcC-CCCCCHHHHHHHHHHhCCH-----------
Confidence 2234689999999999 99999999999 69999999887665 5778899999999888631
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
....+.++++.++++.+.+.|+++ |+.+.+++++|+.| ..+. .. .+..+|.++||.+.||..
T Consensus 245 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~---~~~~-------------~~-~~~~~l~~~gi~v~~g~~ 306 (337)
T 3p1t_A 245 RAREAHIAKTLAQRRRVADALRGL-GYRVASSEANFVLV---ENAA-------------GE-RTLRFLRERGIQVKDAGQ 306 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSEEEE---ECTT-------------TH-HHHHHHHHTTEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeEEEE---EcCC-------------HH-HHHHHHHHCCeEEEECcc
Confidence 112234555677788899999988 88888888776654 3222 22 345678889999999999
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
|+.. +++|||++ ++++++++++.|+++.
T Consensus 307 ~~~~---~~iRis~~-~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 307 FGLH---HHIRISIG-REEDNDRLLAALAEYS 334 (337)
T ss_dssp GTCC---SEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred CCCC---CeEEEecC-CHHHHHHHHHHHHHHh
Confidence 9762 48999999 4688999998888765
No 80
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=4.3e-36 Score=296.68 Aligned_cols=311 Identities=14% Similarity=0.133 Sum_probs=235.9
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+|+++|||+.|.|.. +. |+.+++++.+.+. ....|+++.+ .++|++
T Consensus 13 ~g~~~id~~~~~~~~------------------------~~-----~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~ 58 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTD------------------------GD-----KDHLEKHLVENLN----CIRHYPEPDA-GTLRQM 58 (350)
T ss_dssp ---CCEECSCCSCCC------------------------SC-----CHHHHHHHHHTGG----GGGSCCCTTC-HHHHHH
T ss_pred ccccEEEccCCCCCC------------------------CC-----CHHHHHHHHHhHh----HHhcCCCCcH-HHHHHH
Confidence 457899999998775 43 8899999988774 3468888776 899999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC--CCcccChHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR--QQIGVLIIN 177 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~--~~~~~d~~~ 177 (463)
+|++++ +++++|++|+|+++++..++.++. ||+|+++ .|.++ +. ...++++
T Consensus 59 la~~~~------~~~~~i~~t~g~~~al~~~~~~l~---gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-- 127 (350)
T 3fkd_A 59 LAKRNS------VDNNAILVTNGPTAAFYQIAQAFR---GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF-- 127 (350)
T ss_dssp HHHHTT------CCGGGEEEESHHHHHHHHHHHHTT---TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC--
T ss_pred HHHHhC------cCHHHEEEcCCHHHHHHHHHHHHC---CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc--
Confidence 999985 788999999999999999999883 9999997 56665 22 2244443
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+ ++++|++++||||||.+++.+++.+|+++|+++ +||+||+|..+.+. +... . .. +
T Consensus 128 -------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~-~~~~-~-~~----~-- 183 (350)
T 3fkd_A 128 -------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTE-EVIR-P-AD----I-- 183 (350)
T ss_dssp -------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSS-CCCC-G-GG----G--
T ss_pred -------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccC-cchh-h-HH----h--
Confidence 2 799999999999999999999999999998866 99999999988763 2221 1 11 1
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 337 (463)
+..+++|+++||||++ |++|+|+||++ .++++++.+.+... .++++.+.|.++..+|+... . +.+
T Consensus 184 --~~~~~~i~~~S~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~----~---~~~- 248 (350)
T 3fkd_A 184 --KGRKNLVMVYSFSHAY-GIPGLRIGYIV---ANKDFMKRVAAFST-PWAVNALAIEAAKFILIHPA----Q---FTL- 248 (350)
T ss_dssp --TTCSSEEEEEESHHHH-SCGGGCCEEEE---CCHHHHHHHHTTCC-TTCSCHHHHHHHHHHHHCTT----T---TCC-
T ss_pred --hcCCCEEEEecCchhc-cCcchheEeEE---eCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhCHH----H---HHH-
Confidence 4455789999999999 89999999999 59999999988776 57889999999999886432 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 338 SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
.+++.+ ++++.+.+.|+++||+.+.++.+ .|+|++++.. +..++...+++++||.++||+.|+
T Consensus 249 --~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~~g~~f~ 311 (350)
T 3fkd_A 249 --PIRKWQ-RNTVDFITALNRLDGVEVHPSGT-TFFLLRLKKG-------------TAAELKKYMLEEYNMLIRDASNFR 311 (350)
T ss_dssp --CHHHHH-HHHHHHHHHHHHSTTEEECCCSS-SEEEEEESSS-------------CHHHHHHHHHHTTCEECEECTTST
T ss_pred --HHHHHH-HHHHHHHHHHhcCCCcEECCCCC-cEEEEECCCC-------------CHHHHHHHHHHHCCEEEEeCccCC
Confidence 122223 77888999998888998876655 4556555421 245555555554999999999997
Q ss_pred CCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 418 ~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
. .+.+++|||++. +++++++++.|+++.++
T Consensus 312 ~-~~~~~iRis~~~-~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 312 G-LDESYVRITTQR-PAQNQLFIKALETFLEK 341 (350)
T ss_dssp T-CCTTEEEEECCC-HHHHHHHHHHHHHHHTC
T ss_pred C-CCCCEEEEEcCC-HHHHHHHHHHHHHHHHH
Confidence 5 346799999984 46777777777655543
No 81
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.1e-33 Score=284.41 Aligned_cols=314 Identities=14% Similarity=0.125 Sum_probs=236.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+.+++.+.+.........|++..|..++++++++++.+.+|. ++|++|+|+++++..++.+++ ++||.|+++
T Consensus 59 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~~~~~~~~~-~~gd~V~~~ 133 (398)
T 3a2b_A 59 DTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSNLGPLSCLM-GRNDYILLD 133 (398)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHHSS-CTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHHHHh-CCCCEEEEC
Confidence 788999998887653223446777788889999999999887663 689999999999999999997 899999997
Q ss_pred -------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 -------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 -------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|.++ .-.. +|+ +.|++.+++... .++++|++++|+||||.+++ +++|+++|+++|++
T Consensus 134 ~p~~~~~~~~~~~~g~~~~~v~~--~d~-~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~---~~~l~~~~~~~~~~ 205 (398)
T 3a2b_A 134 ERDHASIIDGSRLSFSKVIKYGH--NNM-EDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVN---LPELTSIANEFDAA 205 (398)
T ss_dssp TTCCHHHHHHHHHSSSEEEEECT--TCH-HHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCE
T ss_pred CccCHHHHHHHHHcCCceEEeCC--CCH-HHHHHHHHhhcc--CCceEEEEeCCCCCCCCccC---HHHHHHHHHHcCcE
Confidence 45555 1111 588 999999875210 15899999999999999988 78888899999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCce-EEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-h-
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQ-LVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA-S- 304 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~- 304 (463)
||+||+|+.+.++ .. ..++... + +..++ +++++|+||++ +++| ||++ +++++++.+.... .
T Consensus 206 li~De~~~~~~~~-~~-~~~~~~~---~----~~~~~~di~~~s~sK~~-~~~G---G~~~---~~~~~~~~l~~~~~~~ 269 (398)
T 3a2b_A 206 VMVDDAHSLGVIG-HK-GAGTASH---F----GLNDDVDLIMGTFSKSL-ASLG---GFVA---GDADVIDFLKHNARSV 269 (398)
T ss_dssp EEEECTTTTTTSS-GG-GCCHHHH---H----TCGGGCSEEEEESSSTT-CSSC---EEEE---ECHHHHHHHHHHCHHH
T ss_pred EEEECCCcccccC-CC-CCchHhh---c----CCCcCCeEEEecccccc-cCCC---cEEE---eCHHHHHHHHHhcccc
Confidence 9999999987662 11 1233222 1 11123 59999999999 7778 9999 4889999988753 3
Q ss_pred hcccCChHHHHH-HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 305 IALSPNVPAQIF-MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 305 ~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
...+++.+.|.+ +..+++ ..++.++++++++++++.+.+.|+++ |+.+..+.| +++|+.+ +.+.
T Consensus 270 ~~~~~~~~~~~a~~~~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g-~~~~~~~--~~~~ 334 (398)
T 3a2b_A 270 MFSASMTPASVASTLKALE-----------IIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATES-PILPIFI--RSNE 334 (398)
T ss_dssp HSSBCCCHHHHHHHHHHHH-----------HHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCCS-SEEEEEC--CCHH
T ss_pred eecCCCCHHHHHHHHHHHH-----------HHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCC-CEEEEEc--CCHH
Confidence 345566777764 445653 12344568889999999999999998 888877764 6777544 4321
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..++... |.++||.+.||..|+.+.+.+++||+++ .+++++++++++|+++++++
T Consensus 335 ----------~~~~l~~~-l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 335 ----------KTFWVTKM-LQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp ----------HHHHHHHH-HHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHH-HHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 13444444 5556999999998875434568999999 59999999999999988654
No 82
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=7e-34 Score=279.26 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=230.3
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
.++|+|+.|.++. +. |+.+++++.+.+... ....|++. +..++|++++
T Consensus 19 ~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~~--~~~~y~~~-~~~~lr~~la 66 (335)
T 1uu1_A 19 RDKTYLALNENPF------------------------PF-----PEDLVDEVFRRLNSD--ALRIYYDS-PDEELIEKIL 66 (335)
T ss_dssp CCSEEESSCCCSS------------------------CC-----CHHHHHHHHHTCCGG--GGGSCCCS-SCHHHHHHHH
T ss_pred CcceECCCCCCCC------------------------CC-----CHHHHHHHHHHhhhh--hhhcCCCC-chHHHHHHHH
Confidence 3589999998764 33 889999998877431 34678664 6899999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------cCcee---c-CCCcccChHHHHHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------FHTTW---K-RQQIGVLIINDLQQ 181 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------~g~~~---~-~~~~~~d~~~~l~~ 181 (463)
++++++ .+++++|++|+|+++++..++.++ ||+|+++ .|.++ + +.++.+|+ +.|
T Consensus 67 ~~~~~~---~~~~~~v~~~~G~~~al~~~~~~~----gd~Vl~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l-- 136 (335)
T 1uu1_A 67 SYLDTD---FLSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPE-VNV-- 136 (335)
T ss_dssp HHHTCS---SCCGGGEEEESSHHHHHHHHHHHS----SEEEECSSSCHHHHHHHHHHTCEEEECCCCTTSCCCC-CCC--
T ss_pred HHcCCC---CCCHHHEEEcCChHHHHHHHHHHh----CCcEEECCCcHHHHHHHHHcCCeEEEeccCCCCCCCH-HHc--
Confidence 999643 457789999999999999999987 7888885 45555 2 33467888 777
Q ss_pred HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 182 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
+ ++++|++++||||||.+++.+++.+|+++| + ++|+||+|+.+.+ . +..+. + +.
T Consensus 137 ---~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~-~--~~~~~------~----~~ 190 (335)
T 1uu1_A 137 ---G------EGDVVFIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHG-E--SYVDF------L----KK 190 (335)
T ss_dssp ---C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHC-C--CCGGG------G----GT
T ss_pred ---C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcc-h--hHHHH------h----hh
Confidence 2 689999999999999999999999998877 7 8999999998654 1 21221 1 33
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
.+++++++|+||++ |++|+|+||++ +++++++.+.+... .++++.+.|.++.++|+. ..+.++.
T Consensus 191 ~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~-----------~~~~~~~ 254 (335)
T 1uu1_A 191 YENLAVIRTFSKAF-SLAAQRVGYVV---ASEKFIDAYNRVRL-PFNVSYVSQMFAKVALDH-----------REIFEER 254 (335)
T ss_dssp CSSEEEEEESTTTT-TCGGGCCEEEE---ECHHHHHHHHHHSC-TTCSCHHHHHHHHHHHHT-----------HHHHHHH
T ss_pred CCCEEEEecchhhc-CCcccCeEEEE---eCHHHHHHHHHhcC-CCCcCHHHHHHHHHHhCC-----------HHHHHHH
Confidence 34789999999999 89999999999 48999999887765 468899999999988752 2335567
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
+++++++++.+.+.|+++ |+.+. |.+++|+|+++ +.. +..++. ..|.++||.+.|+
T Consensus 255 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~--~~~-----------~~~~~~-~~l~~~gi~v~~~-------- 310 (335)
T 1uu1_A 255 TKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFM--EKE-----------EKERLL-EHLRTKNVAVRSF-------- 310 (335)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEEC--CTH-----------HHHHHH-HHHHHHTEEEEEE--------
T ss_pred HHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEEC--CCC-----------CHHHHH-HHHHHCCEEEEEC--------
Confidence 888999999999999887 77765 44567788554 321 133444 4455789999981
Q ss_pred CcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 422 IFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 422 ~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
.+++|||++.. +++++++++|+++
T Consensus 311 ~~~iRis~~~~-~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 311 REGVRITIGKR-EENDMILRELEVF 334 (335)
T ss_dssp TTEEEEECCCH-HHHHHHHHHHHCC
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhh
Confidence 23899999854 6799999888753
No 83
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4.3e-31 Score=265.04 Aligned_cols=314 Identities=13% Similarity=0.115 Sum_probs=222.6
Q ss_pred cHHHHHHHHHHhhhcCCC----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGG----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+.+++.+.+...... ...|+...+..++|+.++++++ . +++|++++| ++++..++.+++ ++||.
T Consensus 59 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~------~-~~~i~~~sG-t~a~~~~l~~~~-~~gd~ 129 (399)
T 3tqx_A 59 HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG------T-DDTILYSSC-FDANGGLFETLL-GPEDA 129 (399)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT------C-SEEEEESCH-HHHHHTTHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC------C-CcEEEECch-HHHHHHHHHHhc-CCCCE
Confidence 788999988887763211 1112233345788888888874 2 256666666 779999999997 99999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++....+.++++|++++|+||||.+++ +++|+++|++
T Consensus 130 v~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~ 203 (399)
T 3tqx_A 130 IISDELNHASIIDGIRLCKAQRYRYK--NNAM-GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSICDLADK 203 (399)
T ss_dssp EEEETTCCHHHHHHHHSCCSEEEEEC--TTCT-THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHcCCceeEeC--CCCH-HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHH
Confidence 9997 44444 111 1578 9999999875443446899999999999999999 7888899999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
+|++||+||+|+...++ . ...++.... ++ ..+++++++|+||++ + |++.||++ +++++++.+....
T Consensus 204 ~~~~li~De~~~~~~~~-~-~~~~~~~~~-~~-----~~~~di~~~s~sK~~-~--g~~gG~~~---~~~~~~~~~~~~~ 269 (399)
T 3tqx_A 204 YNALVMVDDSHAVGFIG-E-NGRGTPEYC-GV-----ADRVDILTGTLGKAL-G--GASGGYTS---GHKEIIEWLRNRS 269 (399)
T ss_dssp TTCEEEEECTTTTTTSS-T-TSCCHHHHH-TC-----TTCCSEEEEESSSSS-C--SSCCEEEE---ECHHHHHHHHHHC
T ss_pred cCCEEEEECCccccccC-C-CCCchHHhh-CC-----CCCCcEEEecchHhc-c--cCceEEEE---cCHHHHHHHHHhC
Confidence 99999999999744342 2 122333321 10 123469999999998 5 45669999 5899999988764
Q ss_pred h-h--cccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 304 S-I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 304 ~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
. . +.+.+...+.++...++ .. ++.++++++++++++++.+.|+++ |+.+.++.+++ +|+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~- 335 (399)
T 3tqx_A 270 RPYLFSNTVAPVIVATSLKVLE-----------LLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVMLG- 335 (399)
T ss_dssp HHHHSSCCCCHHHHHHHHHHHH-----------HHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEEEE-
T ss_pred cceeccCCCcHHHHHHHHHHHH-----------HHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeC-
Confidence 3 2 23455666666666542 22 446678999999999999999998 88887666654 554443
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
... +..+++.. |.++||.+.|+..+..+.+.+++||+++ .+++++++++++|+++++++
T Consensus 336 -~~~----------~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 336 -DAQ----------LATNMADH-LLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp -CHH----------HHHHHHHH-HHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -CHH----------HHHHHHHH-HHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 221 13444444 5567999998765544456679999997 78899999999999988753
No 84
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=1.7e-31 Score=268.53 Aligned_cols=313 Identities=14% Similarity=0.136 Sum_probs=225.3
Q ss_pred cHHHHHHHHHHhhhcCCC--CCccC--CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGG--LGAYS--DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~--~~~Y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
|+.+.+++.+.+..+... ...|+ ...+..++|++++++++ ++ ++|++++| ++++..++.+++ ++||.
T Consensus 61 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~~sG-s~a~~~~~~~~~-~~gd~ 131 (401)
T 1fc4_A 61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG------ME-DAILYSSC-FDANGGLFETLL-GAEDA 131 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHTTHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC------CC-cEEEeCCh-HHHHHHHHHHHc-CCCCE
Confidence 788999998877653211 11332 24567899999999984 44 66767666 668999999997 89999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++....+.++++|++++||||||.+++ +++|.++|++
T Consensus 132 v~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~ 205 (401)
T 1fc4_A 132 IISDALNHASIIDGVRLCKAKRYRYA--NNDM-QELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADK 205 (401)
T ss_dssp EEEETTCCHHHHHHHHTSCSEEEEEC--TTCH-HHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred EEEcchhHHHHHHHHHHcCCceEEEC--CCCH-HHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHHHHHHHHH
Confidence 9997 34444 111 3578 9999998764332335899999999999999999 7888889999
Q ss_pred CCeEEEeccccc-ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 224 ENLVLLGDEVYQ-QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 224 ~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
+|++||+||+|+ .+.+..+.. +... .++ .. +.+|+++|+||++++++ .||++ +++++++.+...
T Consensus 206 ~~~~li~De~~~~g~~~~~g~~---~~~~-~~~----~~-~~di~~~s~sK~~~~~~---gG~~~---~~~~~~~~l~~~ 270 (401)
T 1fc4_A 206 YDALVMVDDSHAVGFVGENGRG---SHEY-CDV----MG-RVDIITGTLGKALGGAS---GGYTA---ARKEVVEWLRQR 270 (401)
T ss_dssp TTEEEEEECTTTTTTSSTTSCC---HHHH-TTC----TT-CCSEEEEESSSTTCSSS---CEEEE---ECHHHHHHHHHH
T ss_pred cCCEEEEECcccccccCCCCCc---cHHH-cCC----Cc-CCcEEEecchhhccCCC---CEEEE---cCHHHHHHHHHh
Confidence 999999999996 654311222 1111 111 22 24689999999984333 49999 488999988776
Q ss_pred hh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 303 AS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 303 ~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
.. .+.+.+.+.|.++.++++ ...+.++.+++++++++++.+.|+++ |+.+. +..+.++|++++
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~- 336 (401)
T 1fc4_A 271 SRPYLFSNSLAPAIVAASIKVLE-----------MVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLG- 336 (401)
T ss_dssp CHHHHHSCCCCHHHHHHHHHHHH-----------HHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEE-
T ss_pred CcCceeCCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcC-
Confidence 52 245778888888887763 22223467888999999999999988 88877 456667776553
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
... +..++. ..|.++||.+.+|..|+.+.+.+++||+++ .+++++++++++|+++++++
T Consensus 337 -~~~----------~~~~l~-~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 337 -DAV----------VAQKFA-RELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp -CHH----------HHHHHH-HHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -ChH----------HHHHHH-HHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 211 133444 455667999999998876545678999998 78999999999999988754
No 85
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=2.1e-31 Score=269.04 Aligned_cols=321 Identities=14% Similarity=0.179 Sum_probs=238.7
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCC----CCCccCC--CCCCH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG----GLGAYSD--SRGIP 110 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~----~~~~Y~~--~~g~~ 110 (463)
|+++++|+.|.++ +. |+.+++++.+.+..... ....|++ ..+..
T Consensus 26 g~~~i~l~~~~~~-------------------------~~-----~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 75 (420)
T 1t3i_A 26 GHPLVYLDNAATS-------------------------QK-----PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYE 75 (420)
T ss_dssp TEECEECBTTTCC-------------------------CC-----CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHH
T ss_pred CCceEEecCCccC-------------------------CC-----CHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHH
Confidence 4558999999876 22 88999999888775321 1345654 46778
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHH----hcCCCCEEEEc-----------------cCcee--
Q 041151 111 GVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCV----IRGEGDGVVLL-----------------FHTTW-- 166 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l----~~~~gd~Vlvp-----------------~g~~~-- 166 (463)
++|++++++++ . ++++|++|+|+++++..++.++ + ++||+|+++ .|.++
T Consensus 76 ~l~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (420)
T 1t3i_A 76 AVRNKVAKFIN------ARSPREIVYTRNATEAINLVAYSWGMNNL-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF 148 (420)
T ss_dssp HHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHcC------CCCCCeEEEcCChHHHHHHHHHHhhhccc-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEE
Confidence 99999999986 4 5789999999999999999999 7 899999997 23333
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
....+.+|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|++||+|++|+.+..
T Consensus 149 v~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----- 213 (420)
T 1t3i_A 149 VQLDEQESFDL-EHFKTLLSE------KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY----- 213 (420)
T ss_dssp ECBCTTSSBCH-HHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----
T ss_pred eccCCCCCcCH-HHHHHhhCC------CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc-----
Confidence 335567899 999999876 7999999999999999999 78888899999999999999986432
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--------------------
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-------------------- 304 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-------------------- 304 (463)
..++..+ + .++++.|+||.+ |++| +||+++ ++++++.+.....
T Consensus 214 ~~~~~~~--------~---~di~~~s~sK~~-~~~g--~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 1t3i_A 214 PLDVQLI--------D---CDWLVASGHKMC-APTG--IGFLYG---KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPH 276 (420)
T ss_dssp CCCHHHH--------T---CSEEEEEGGGTT-SCTT--CEEEEE---CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTG
T ss_pred cCchhhc--------C---CCEEEEehhhhc-CCCc--eEEEEE---chHHHhhcCceecCCCccccccccccCCCCchh
Confidence 1133322 2 358999999977 7778 999994 8888887765432
Q ss_pred -hcccCChHHHHHHHH-hcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccCC------ceeEEe
Q 041151 305 -IALSPNVPAQIFMGL-MVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRNVVCNFTE------GAMYSF 374 (463)
Q Consensus 305 -~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~------g~~~~~ 374 (463)
...+++.+.|.++.. +++ +.. ..++++++++++++++.+.|+++||+.+..+. ++++.|
T Consensus 277 ~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~ 345 (420)
T 1t3i_A 277 KFEAGTPAIAEAIALGAAVD-----------YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF 345 (420)
T ss_dssp GGCCSSCCHHHHHHHHHHHH-----------HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE
T ss_pred hccCCCccHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEE
Confidence 112456677766543 331 222 24567888999999999999998898887764 666655
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC----CC-CcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK----EG-IFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~----~~-~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
.+ +.. +..++ .+.|.++||.+.+|..|..+ -+ .+++||+++ .+++++++++++|++++
T Consensus 346 -~~--~~~-----------~~~~~-~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 346 -NV--AGL-----------HASDV-ATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp -EE--TTB-----------CHHHH-HHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -EE--CCC-----------CHHHH-HHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 33 211 13344 46678899999999765321 01 458999999 58899999999999988
Q ss_pred HHHHH
Q 041151 448 DEFME 452 (463)
Q Consensus 448 ~~~~~ 452 (463)
+++++
T Consensus 411 ~~~~~ 415 (420)
T 1t3i_A 411 RFFSD 415 (420)
T ss_dssp HHTC-
T ss_pred HHhcC
Confidence 76643
No 86
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.98 E-value=4.3e-31 Score=265.36 Aligned_cols=320 Identities=13% Similarity=0.150 Sum_probs=237.8
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCC------ccCCCCCCH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLG------AYSDSRGIP 110 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~------~Y~~~~g~~ 110 (463)
|++++.|+.|.++ +. |+.+++++.+.+.......+ +|.+..+..
T Consensus 21 g~~~i~l~~~~~~-------------------------~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (406)
T 1kmj_A 21 GLPLAYLDSAASA-------------------------QK-----PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKME 70 (406)
T ss_dssp TEECEECCTTTCC-------------------------CC-----CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHH
T ss_pred CCceEEecCCccC-------------------------CC-----CHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHH
Confidence 4568999988776 22 78899999888876321111 133456678
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHH----hcCCCCEEEEc-----------------cCcee--
Q 041151 111 GVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCV----IRGEGDGVVLL-----------------FHTTW-- 166 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l----~~~~gd~Vlvp-----------------~g~~~-- 166 (463)
++|++++++++ . ++++|++|+|+++++..++.++ + ++||+|+++ .|.++
T Consensus 71 ~l~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (406)
T 1kmj_A 71 NVRKRASLFIN------ARSAEELVFVRGTTEGINLVANSWGNSNV-RAGDNIIISQMEHHANIVPWQMLCARVGAELRV 143 (406)
T ss_dssp HHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcC------CCCCCeEEEeCChhHHHHHHHHHhhhhcC-CCCCEEEEecccchHHHHHHHHHHHhCCCEEEE
Confidence 99999999985 4 5689999999999999999999 7 899999997 24444
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
...++.+|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|++||+||+|+.+..
T Consensus 144 ~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~----- 208 (406)
T 1kmj_A 144 IPLNPDGTLQL-ETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH----- 208 (406)
T ss_dssp ECBCTTSCBCG-GGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----
T ss_pred EecCCCCCcCH-HHHHHHhcc------CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC-----
Confidence 234567899 999999876 7999999999999999999 78888899999999999999986422
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--------------------
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-------------------- 304 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-------------------- 304 (463)
..++... ++++++.|+||.+ |++| +||+++ ++++++.+.....
T Consensus 209 ~~~~~~~-----------~~d~~~~s~~K~~-g~~G--~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (406)
T 1kmj_A 209 PVDVQAL-----------DCDFYVFSGHKLY-GPTG--IGILYV---KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAP 271 (406)
T ss_dssp CCCHHHH-----------TCSEEEEEGGGTT-SCTT--CEEEEE---CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTT
T ss_pred CCccccc-----------CCCEEEEEchhcc-CCCC--cEEEEE---eHHHHhhcCCcccCCCceeecccccccccCCCc
Confidence 1233222 1358899999998 8888 899994 8888887754431
Q ss_pred --hcccCChHHHHHHH-HhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccC--CceeEEeeecc
Q 041151 305 --IALSPNVPAQIFMG-LMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNSCRNVVCNFT--EGAMYSFPQIR 378 (463)
Q Consensus 305 --~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~--~g~~~~~~~~~ 378 (463)
...+++.+.|.++. ++++ .... ..++++++++++++++.+.|+++||+.+..+ .++++.| .++
T Consensus 272 ~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~ 340 (406)
T 1kmj_A 272 WRFEAGTPNTGGIIGLGAALE----------YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLG 340 (406)
T ss_dssp GGGCCSSCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EET
T ss_pred hhccCCCCCHHHHHHHHHHHH----------HHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EEC
Confidence 11335666676554 3432 1111 2456788899999999999999889988877 7887776 232
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. .+..++ .+.|.++||.+.+|..|..+ ...+++||+++ .+++++++++++|+++++.+
T Consensus 341 --~-----------~~~~~~-~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 341 --K-----------HHAYDV-GSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp --T-----------CCHHHH-HHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --C-----------CCHHHH-HHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 1 023444 46678889999999865421 11358999999 48999999999999887653
No 87
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.98 E-value=1.4e-30 Score=260.24 Aligned_cols=304 Identities=13% Similarity=0.074 Sum_probs=217.9
Q ss_pred cHHHHHHHHHHhhhcCC--CCCcc--CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSG--GLGAY--SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~--~~~~Y--~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+.+++.+.+..... ....| +...+..++|++++++++ ++ +.|++++| ++++..++.+++ ++||.
T Consensus 55 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~~sG-t~a~~~~~~~~~-~~gd~ 125 (384)
T 1bs0_A 55 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG------YS-RALLFISG-FAANQAVIAAMM-AKEDR 125 (384)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC------CC-cEEEeCCc-HHHHHHHHHHhC-CCCcE
Confidence 78899999888765321 11223 445677899999999984 33 56666666 899999999997 89999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++. .+++++|++++||||||.+++ +++|+++|++
T Consensus 126 v~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~l~~~l~~~---~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~ 196 (384)
T 1bs0_A 126 IAADRLSHASLLEAASLSPSQLRRFA--HNDV-THLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQ 196 (384)
T ss_dssp EEEETTCCHHHHHHHHTSSSEEEEEC--TTCH-HHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHHHHHH
T ss_pred EEEcccccHHHHHHHHHcCCCEEEeC--CCCH-HHHHHHHHhc---CCCCeEEEEeCCCCCCCCccC---HHHHHHHHHH
Confidence 9997 44444 111 2578 9999988751 012688888899999999999 6788889999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
+|++||+||+|+.+.++... .++.. .+ +. ...++++|+||++ +++| ||+++ ++++++.+....
T Consensus 197 ~~~~li~De~~~~~~~~~~~--~~~~~---~~----~~-~~di~~~s~sK~~-~~~G---G~~~~---~~~~~~~l~~~~ 259 (384)
T 1bs0_A 197 HNGWLMVDDAHGTGVIGEQG--RGSCW---LQ----KV-KPELLVVTFGKGF-GVSG---AAVLC---SSTVADYLLQFA 259 (384)
T ss_dssp TTCEEEEECTTTTTTSSGGG--CCHHH---HT----TC-CCSEEEEESSSTT-SSCC---EEEEE---CHHHHHHHHHHC
T ss_pred cCcEEEEECCcccceecCCC--CchHH---hc----CC-CCcEEEeeccchh-hccC---cEEEe---CHHHHHHHHHhc
Confidence 99999999999876552111 12222 12 21 1238999999999 7666 99994 888999887754
Q ss_pred -hh--cccCChHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc
Q 041151 304 -SI--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378 (463)
Q Consensus 304 -~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~ 378 (463)
.. +.+.+.+.+.++.++++ ... +.++.+++++++++++.+.|+++ |+.+.+ .++.++|+.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~ 326 (384)
T 1bs0_A 260 RHLIYSTSMPPAQAQALRASLA-----------VIRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVG 326 (384)
T ss_dssp HHHHSSBCCCHHHHHHHHHHHH-----------HHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEE
T ss_pred hhhhcCCCCCHHHHHHHHHHHH-----------HHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeC
Confidence 22 23577888877777653 233 44567888999999999999998 787764 44556675543
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
... +..++. ..|.++||.+.|+..|+.+.+.+++||+++ .+++++++++++|+++
T Consensus 327 --~~~----------~~~~l~-~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 327 --DNS----------RALQLA-EKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp --SHH----------HHHHHH-HHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred --CHH----------HHHHHH-HHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 211 134444 445567999999998875445578999999 4889999999999764
No 88
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.1e-30 Score=255.94 Aligned_cols=306 Identities=14% Similarity=0.141 Sum_probs=228.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++.+++++.+.+. ..|++. ..++++++++++.+.+|.+ ++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 32 ~~~v~~a~~~~~~------~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~-~~gd~vl~~ 101 (386)
T 2dr1_A 32 FPEVLEIMKVQMF------SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGV-SKGGKVLVT 101 (386)
T ss_dssp CHHHHHHTTSCCC------CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHS-CTTCEEEEE
T ss_pred cHHHHHHHhcccc------cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhh-cCCCeEEEE
Confidence 7777776654432 245432 3688889999988888875 56789999999999999999997 899999997
Q ss_pred ---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ ...++.+|+ +.|++++++ .+++++|++++|+||||.+.+ +++|+++|+
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 173 (386)
T 2dr1_A 102 IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKP-EDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAK 173 (386)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCceEEEecCCCCCCCH-HHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHH
Confidence 34444 334566999 999999964 127899999999999999987 788888999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH--
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY-- 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-- 300 (463)
++|++||+||+|+.+.+. .++ ...+.++++.|+||++ +.++ ++||+++ ++++++.+.
T Consensus 174 ~~~~~li~D~a~~~~~~~-----~~~-----------~~~~~di~~~s~sK~~-~~~~-g~G~~~~---~~~~~~~~~~~ 232 (386)
T 2dr1_A 174 EHDKLVFVDAVSAMGGAD-----IKF-----------DKWGLDVVFSSSQKAF-GVPP-GLAIGAF---SERFLEIAEKM 232 (386)
T ss_dssp HTTCEEEEECTTTBTTBC-----CCT-----------TTTTCSEEEEETTSTT-CCCS-SCEEEEE---CHHHHHHHTTC
T ss_pred HcCCeEEEEccccccCcc-----ccc-----------cccCCcEEEEeccccc-cCCC-ceEEEEE---CHHHHHHHhcC
Confidence 999999999999975441 121 2223468999999999 6552 3899995 788887762
Q ss_pred --------------hhh---hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 301 --------------KIA---SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 301 --------------~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
... ...++++.+.|.++..+++ ...++ .++++++++++++++.+.|+++ |
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g 301 (386)
T 2dr1_A 233 PERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALR----------IIEKMGGKEKWLEMYEKRAKMVREGVREI-G 301 (386)
T ss_dssp TTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHH----------HHHHTTCHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 221 2345678888888877763 12222 4567888999999999999998 8
Q ss_pred cccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcH
Q 041151 362 VVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDM 436 (463)
Q Consensus 362 ~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i 436 (463)
+.+..+++ +.++|+.+ |.+ .+..++... |.++||.+.||..|. ..+++||+++ .+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~-l~~~gi~v~~~~~~~---~~~~iRi~~~~~~~~~~i 365 (386)
T 2dr1_A 302 LDILAEPGHESPTITAVLT--PPG----------IKGDEVYEA-MRKRGFELAKGYGSV---KEKTFRIGHMGYMKFEDI 365 (386)
T ss_dssp CCBSSCTTCBCSSEEEEEC--CTT----------CCHHHHHHH-HHHTTEECEECCGGG---TTTEEEEECCSSCCHHHH
T ss_pred CeeCcCccccCCceEEEEc--CCC----------CCHHHHHHH-HHHCCeEEecCcccc---CCCEEEEECCCCCCHHHH
Confidence 88877653 56677444 322 124455555 555699999998653 2348999999 699999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 437 ~~~~~~l~~~l~~~~~~ 453 (463)
++++++|+++++++..+
T Consensus 366 ~~~~~~l~~~~~~~~~~ 382 (386)
T 2dr1_A 366 QEMLDNLREVINELKKQ 382 (386)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999887544
No 89
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.97 E-value=3.4e-31 Score=266.98 Aligned_cols=280 Identities=13% Similarity=0.141 Sum_probs=203.3
Q ss_pred CCCccCCCCCCH---HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------
Q 041151 99 GLGAYSDSRGIP---GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------- 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~---~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------- 161 (463)
..+.|+. .|.+ +|+++++++++ . +++++++|+++++..++.+++ ++||.|+++
T Consensus 52 ~~~~Y~~-~~~~~~~~l~~~ia~~~g------~--~~~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~ 121 (404)
T 1e5e_A 52 SGYIYTR-LGNPTVSNLEGKIAFLEK------T--EACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHA 121 (404)
T ss_dssp CSCCBTT-TCCHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTH
T ss_pred CCccccC-CcChHHHHHHHHHHHHhC------C--CcEEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHH
Confidence 3467877 5666 89999999985 2 477888888899999999997 899999997
Q ss_pred ---cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-CCeEEEecccccc
Q 041151 162 ---FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-ENLVLLGDEVYQQ 236 (463)
Q Consensus 162 ---~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-~~~~vi~Deay~~ 236 (463)
.|+++ ..... |+ +.|++.+++ ++++|++++||||||.+++ +++|+++|++ +|++||+||+|+.
T Consensus 122 ~~~~g~~~~~v~~~--d~-~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~ 189 (404)
T 1e5e_A 122 LTKFGIQVDFINTA--IP-GEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCS 189 (404)
T ss_dssp HHHTTCEEEEECTT--ST-THHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTC
T ss_pred HHHcCCEEEEECCC--CH-HHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCch
Confidence 24444 11111 77 999998876 8999999999999999997 7888899999 9999999999998
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHH-HHHhhhh-h-cccCChH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVD-EIYKIAS-I-ALSPNVP 312 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~~ 312 (463)
+.+. . ++ . + +++|++.|+||+| +++|+|+ ||+++ ++++++ .+..... . +.+.+.+
T Consensus 190 ~~~~--~---~~-~----~-------~~di~~~S~sK~~-~~~g~ri~G~~~~---~~~~~~~~l~~~~~~~~g~~~~~~ 248 (404)
T 1e5e_A 190 PMIT--N---PV-D----F-------GVDVVVHSATKYI-NGHTDVVAGLICG---KADLLQQIRMVGIKDITGSVISPH 248 (404)
T ss_dssp TTTC--C---GG-G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHH
T ss_pred hhhC--C---cc-c----c-------CCEEEEEcCcccc-CCCCCCeEEEEEE---CHHHHHHHHHHHHHhCCCCCCCHH
Confidence 7651 1 11 1 1 2468999999999 8899998 99994 888887 8877765 3 4567888
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------cCCCcccccCC----ceeEEe
Q 041151 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN--------------SCRNVVCNFTE----GAMYSF 374 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--------------~~pg~~~~~~~----g~~~~~ 374 (463)
.|.++...++. .. ...+...++.+.+.+.|+ ++||+.+..++ |+++.|
T Consensus 249 ~~~~~~~~l~~-------~~-------~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~ 314 (404)
T 1e5e_A 249 DAWLITRGLST-------LN-------IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF 314 (404)
T ss_dssp HHHHHHHHHTT-------HH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE
T ss_pred HHHHHHHhHhH-------HH-------HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE
Confidence 88888887752 11 112222333333333333 33556555554 888887
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC----------------------CCC--CcEEEEEec
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ----------------------KEG--IFHLRTTIL 430 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~----------------------~~~--~~~lRis~~ 430 (463)
+++ . ..+.+..++++.|| +.+|..||. ..+ .+++|||++
T Consensus 315 -~~~--~-------------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g 377 (404)
T 1e5e_A 315 -ILK--S-------------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG 377 (404)
T ss_dssp -EET--T-------------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred -EeC--C-------------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC
Confidence 443 1 22345678889999 667766662 012 469999999
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 431 PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
. |++++++++|+++++.....+
T Consensus 378 ~--e~~~~li~~l~~al~~~~~~~ 399 (404)
T 1e5e_A 378 I--EDADELIADFKQGLDALLRSH 399 (404)
T ss_dssp S--SCHHHHHHHHHHHHHHHHCC-
T ss_pred C--CCHHHHHHHHHHHHHHHHHhc
Confidence 8 899999999999998766543
No 90
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=2.8e-30 Score=259.77 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=220.7
Q ss_pred cHHHHHHHHHHhhhcCCC----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCC
Q 041151 82 PADAIARAKHYLSLTSGG----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd 156 (463)
++.+++++.+.+...... ...|+...+..++|++++++++ . +++|++|+|++ ++..++..+.. .+||
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG~~-a~~~~~~~l~~~~~gd 133 (401)
T 2bwn_A 62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ------K-EAALVFSSAYN-ANDATLSTLRVLFPGL 133 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT------C-SEEEEESCHHH-HHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CcEEEECCcHH-HHHHHHHHHhcCCCCC
Confidence 668999998887763211 2345666678899999999985 2 57888988876 77777666531 5899
Q ss_pred EEEEc-------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 157 GVVLL-------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 157 ~Vlvp-------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
.|+++ .|.++ +.+ |. +.|++.++.... +++++|++++|+||||.+++ +++|+++
T Consensus 134 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~----d~-~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l 203 (401)
T 2bwn_A 134 IIYSDSLNHASMIEGIKRNAGPKRIFRHN----DV-AHLRELIAADDP--AAPKLIAFESVYSMDGDFGP---IKEICDI 203 (401)
T ss_dssp EEEEETTCCHHHHHHHHHSCCCEEEECTT----CH-HHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCC---HHHHHHH
T ss_pred EEEECchhhHHHHHHHHHcCCeEEEEcCC----CH-HHHHHHHHhhcc--CCceEEEEecCcCCCCCcCC---HHHHHHH
Confidence 99997 45555 222 77 999998874100 17899999999999999998 7788889
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|++||+||+|+.+.|+. .. ..+... .++ . ...+++++||||++ |++| ||++ +++++++.+.
T Consensus 204 ~~~~~~~li~Dea~~~g~~~~-~g-~~~~~~-~~~----~-~~~~i~~~s~sK~~-~~~G---G~~~---~~~~~~~~l~ 268 (401)
T 2bwn_A 204 AEEFGALTYIDEVHAVGMYGP-RG-AGVAER-DGL----M-HRIDIFNGTLAKAY-GVFG---GYIA---ASARMVDAVR 268 (401)
T ss_dssp HHHHTCEEEEECTTTTTTSST-TS-CCHHHH-HTC----G-GGCSEEEEESSSTT-CSCC---EEEE---ECHHHHHHHH
T ss_pred HHHcCCEEEEeccccccccCC-CC-ceeeec-cCc----c-ccCcEEEeechhhc-cCCC---CEEe---cCHHHHHHHH
Confidence 999999999999999665521 11 222211 111 1 12368999999999 7777 9998 5888888887
Q ss_pred hhhh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 301 KIAS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 301 ~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
.... ...+++.+.+.++.++++ +..+ .++++++++++++++.+.|+++ |+.+..+.++ ++|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~ 335 (401)
T 2bwn_A 269 SYAPGFIFSTSLPPAIAAGAQASIA-----------FLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPV 335 (401)
T ss_dssp HHCHHHHTSBCCCHHHHHHHHHHHH-----------HHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEE
T ss_pred HhCcCceecCCCCHHHHHHHHHHHH-----------HHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEE
Confidence 6432 123345577776666653 2222 2567888999999999999988 8888877776 5664
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
. ++.+. +..++...+++++||.+.|+..|+.+.+..++|++++ .+++++++++++|++++++
T Consensus 336 ~--~~~~~----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 336 V--IGDPV----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp E--CCCHH----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred E--eCChH----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 4 33221 1345555555688999999988876445568999999 6889999999999988754
No 91
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=1.3e-30 Score=259.99 Aligned_cols=308 Identities=15% Similarity=0.098 Sum_probs=218.7
Q ss_pred cHHHHHHHHHHhhhcCCC-----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---C
Q 041151 82 PADAIARAKHYLSLTSGG-----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~ 153 (463)
|+.+++++.+.+...... ...|.+..+..++|++++++++ +++++|++|+|+++++..++.++.. +
T Consensus 14 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~ 87 (384)
T 1eg5_A 14 DDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCATESINWILKTVAETFEK 87 (384)
T ss_dssp CHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCeEEEECCHHHHHHHHHHhhhhhccC
Confidence 889999998887652111 1123344566889999999985 6778999999999999999999851 5
Q ss_pred CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+||+|+++ .|.++ ...++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 88 ~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~--- 157 (384)
T 1eg5_A 88 RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKL-EELEKLVDE------DTFLVSIMAANNEVGTIQP--- 157 (384)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCH-HHHHHHCCT------TEEEEEEESBCTTTCBBCC---
T ss_pred CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCH-HHHHHHhCC------CCeEEEEECCCCCcccccC---
Confidence 89999997 35555 234567899 999999876 7999999999999999999
Q ss_pred HHHHHHHhhhCC--eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 214 LREILRFCYQEN--LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 214 l~~l~~~a~~~~--~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
+++|.++|++++ ++||+||+|+.. ..+ .++ ...+.++++.|+||++ |++| +||+++
T Consensus 158 ~~~i~~l~~~~~~~~~li~Dea~~~~----~~~-~~~-----------~~~~~di~~~s~sK~~-g~~G--~G~~~~--- 215 (384)
T 1eg5_A 158 VEDVTRIVKKKNKETLVHVDAVQTIG----KIP-FSL-----------EKLEVDYASFSAHKFH-GPKG--VGITYI--- 215 (384)
T ss_dssp HHHHHHHHHHHCTTCEEEEECTTTTT----TSC-CCC-----------TTTCCSEEEEEGGGGT-SCTT--CEEEEE---
T ss_pred HHHHHHHHHhcCCceEEEEEhhhhcC----Ccc-cCc-----------hhcCCCEEEecHHHhc-CCCc--eEEEEE---
Confidence 577888888999 999999999831 111 122 1112458999999988 8888 799995
Q ss_pred ChhH--HHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 292 PPKT--VDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 292 ~~~~--~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
++++ ...+... ....++++.+.|.++..+++ ...++.++++++++++++++.+.|++ +|+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~ 284 (384)
T 1eg5_A 216 RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAME----------IAVEELSEAAKHMEKLRSKLVSGLMN-LGAHII 284 (384)
T ss_dssp CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHH----------HHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEEC
T ss_pred cCCCccccccccCcccccccCCCCChHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEe
Confidence 5554 2222111 01245678888888887763 12334567888999999999999998 588876
Q ss_pred cCC-ce--eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcEEE
Q 041151 366 FTE-GA--MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFHLR 426 (463)
Q Consensus 366 ~~~-g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~lR 426 (463)
.+. ++ .+++ +.++.. +..++. +.|.++||.+.+|..|+... +.+++|
T Consensus 285 ~~~~~~~~~~~~--~~~~~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLS--VSFPNI-----------RGSTLQ-NLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEE--EECTTC-----------CHHHHH-HHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEE--EEeCCC-----------CHHHHH-HHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 553 22 2333 333321 234444 55678999999998875321 136899
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
|+++ .+++++++++++|+++++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999 7899999999999999877643
No 92
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=1.1e-29 Score=257.73 Aligned_cols=314 Identities=14% Similarity=0.135 Sum_probs=220.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCC----HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGI----PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+++++.+++..+......|....|. .+|++.++++++ . +++++++++++++..++.+++ ++||.
T Consensus 80 ~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g------~--~~~i~~~sGs~a~~~al~~l~-~~gd~ 150 (427)
T 2w8t_A 80 DPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG------T--TGAIVFSTGYMANLGIISTLA-GKGEY 150 (427)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHS-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC------C--CceEEecCcHHHHHHHHHHhc-CCCCE
Confidence 7889999988887632223334444454 677777777763 2 245555555679999999997 89999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++... .++++|++++++||||.+++ +++|.++|++
T Consensus 151 vl~~~~~h~~~~~~~~~~g~~~~~~~--~~d~-~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~ 222 (427)
T 2w8t_A 151 VILDADSHASIYDGCQQGNAEIVRFR--HNSV-EDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAP---LKEMVAVAKK 222 (427)
T ss_dssp EEEETTCCHHHHHHHHHSCSEEEEEC--TTCH-HHHHHHHHTSCS--SSCEEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHcCCeeEEeC--CCCH-HHHHHHHHhccC--CCCeEEEEcCCCCCCCCccC---HHHHHHHHHH
Confidence 9997 44444 111 2588 999999875210 15899999999999999998 7888889999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
||+++|+||+|+.+.++ .. ..++... +++ .. +.+|+++||||++ |++| ||++ +++++++.+....
T Consensus 223 ~g~~li~Dea~~~~~~~-~~-g~~~~~~---~~~--~~-~~di~~~s~sK~~-g~~g---G~v~---~~~~l~~~l~~~~ 287 (427)
T 2w8t_A 223 HGAMVLVDEAHSMGFFG-PN-GRGVYEA---QGL--EG-QIDFVVGTFSKSV-GTVG---GFVV---SNHPKFEAVRLAC 287 (427)
T ss_dssp TTCEEEEECTTTTTTSS-TT-SCCHHHH---TTC--TT-CCSEEEEESSSTT-CSCC---EEEE---ECCTTGGGGGGTC
T ss_pred cCCEEEEECCccccccC-CC-CCchHhh---cCC--Cc-CCcEEEecchhhh-ccCC---CEEE---eCHHHHHHHHHhc
Confidence 99999999999988773 21 1233221 211 12 3469999999999 7666 9999 4788888876652
Q ss_pred -h--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEeeeccC
Q 041151 304 -S--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIRL 379 (463)
Q Consensus 304 -~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~~ 379 (463)
. .+.+.+.+.+.++.++++ ...+.++++++++++++++.+.|+++ |+.+. ++..+.++|+.+.
T Consensus 288 ~~~~~~~~~~~~~~aa~~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~- 354 (427)
T 2w8t_A 288 RPYIFTASLPPSVVATATTSIR-----------KLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLE- 354 (427)
T ss_dssp HHHHSSCCCCHHHHHHHHHHHH-----------HHTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEES-
T ss_pred ccccccCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEEC-
Confidence 2 233455555555556653 22223567888999999999999988 88876 4414456675543
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
... +..+++. .|.++||.+.|+..|+.+.+.+++||+++ .+++++++++++|+++++++.+
T Consensus 355 -~~~----------~~~~l~~-~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 355 -DQE----------QAAMMWQ-ALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp -SHH----------HHHHHHH-HHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred -CHH----------HHHHHHH-HHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 211 1344444 45566999999998877556679999999 5999999999999999877643
No 93
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.97 E-value=3.7e-29 Score=252.36 Aligned_cols=306 Identities=12% Similarity=0.023 Sum_probs=215.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCc----cCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGA----YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~----Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+++++.+++..+...... |+......+++++++++++ .+ ..|++ +++++++..++.+++ ++||.
T Consensus 75 ~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~-~sGt~a~~~~l~~~~-~~gd~ 145 (409)
T 3kki_A 75 HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG------FD-ECLLS-QSGWNANVGLLQTIC-QPNTN 145 (409)
T ss_dssp CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT------CS-EEEEE-SCHHHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC------CC-eEEEe-cchHHHHHHHHHHhc-CCCCE
Confidence 789999999988774322222 3333445678888888774 22 34555 555799999999998 99999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ ++|++.+++. ++++|++++|+||||.+++ +++|.++|++
T Consensus 146 Vl~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~le~~l~~~-----~~~~vi~~~~~nptG~~~~---l~~l~~la~~ 214 (409)
T 3kki_A 146 VYIDFFAHMSLWEGARYANAQAHPFM--HNNC-DHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP---LAELVNISKE 214 (409)
T ss_dssp EEEETTSCHHHHHHHHHTTCEEEEEC--TTCH-HHHHHHHHHH-----CSCEEEEESBCTTTCCBCC---HHHHHHHHHH
T ss_pred EEECCCcCHHHHHHHHHcCCeEEEec--CCCH-HHHHHHHHhc-----CCeEEEECCCCCCCCCcCC---HHHHHHHHHH
Confidence 9997 34444 111 1688 9999999874 5899999999999999999 7888899999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
||++||+||+|+.+.++ ... ..+.... ++ . .+..|++.|+||++ +++ .||++ +++++++.+....
T Consensus 215 ~~~~li~De~~~~g~~g-~~g-~~~~~~~-~~----~-~~~di~~~s~sK~~-~~~---gg~v~---~~~~~~~~~~~~~ 279 (409)
T 3kki_A 215 FGCALLVDESHSLGTHG-PNG-AGLLAEL-GL----T-REVHFMTASLAKTF-AYR---AGAIW---CNNEVNRCVPFIS 279 (409)
T ss_dssp HTCEEEEECTTTTTTSS-GGG-CCHHHHH-TC----G-GGCSEEEEESSSTT-CSS---CEEEE---ESSSGGGTHHHHC
T ss_pred cCCEEEEECCccccccC-CCC-Ccchhhc-CC----C-CCCCEEEeecchhh-CCC---ceEEE---ECHHHHHHHHHhC
Confidence 99999999999986552 111 1222211 11 1 12458999999999 655 49998 5888888877653
Q ss_pred h---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCC
Q 041151 304 S---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLP 380 (463)
Q Consensus 304 ~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~ 380 (463)
. .....+...+.++.+.++ ..++.++++++++++++++.+.|+++ |+.+. .++.++|+.+..+
T Consensus 280 ~~~~~~~~~~~~~~aa~~aal~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~ 345 (409)
T 3kki_A 280 YPAIFSSTLLPYEAAGLETTLE-----------IIESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDE 345 (409)
T ss_dssp HHHHHSBCCCHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESH
T ss_pred cCccccCCCcHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCH
Confidence 2 223344555555555542 23333568888999999999999988 77765 3566777655422
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
. +..++... |.++||.+.|+..+..+.+.+++||+++ .+++++++++++|++++++
T Consensus 346 ~------------~~~~~~~~-L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 346 R------------NTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp H------------HHHHHHHH-HHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHHHH-HHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 1 13344444 5566999998665544456679999998 6889999999999998864
No 94
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=3e-29 Score=251.27 Aligned_cols=300 Identities=11% Similarity=0.119 Sum_probs=222.4
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
.|+.+++++.+.+.. .|++. ..++++++++++.+.+|. +++ +|++|+|+++++..++.+++ ++||+|+
T Consensus 45 ~~~~v~~a~~~~~~~------~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~-~~gd~Vl 113 (393)
T 1vjo_A 45 AHPSVLQAMNVSPVG------HLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAV-EPGDVVL 113 (393)
T ss_dssp CCHHHHHHHSSCCCC------TTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHC-CTTCEEE
T ss_pred CCHHHHHHHhccccc------ccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhcc-CCCCEEE
Confidence 477887777654432 45542 467888888888877775 567 99999999999999999997 8999999
Q ss_pred Ec---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 160 LL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 160 vp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l 184 (393)
T 1vjo_A 114 IGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL-EELRTALETH-----RPAILALVHAETSTGARQP---LEGVGEL 184 (393)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred EEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCH-HHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHH
Confidence 97 34444 233566899 9999999864 6899999999999999987 7788889
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|++||+||+|... ..+ ..+ ...+..+++.|+||++ +.++ |+||+++ ++++++.+.
T Consensus 185 ~~~~~~~li~Dea~~~g----~~~-~~~-----------~~~~~di~~~s~sK~l-~~~~-~~G~l~~---~~~~~~~~~ 243 (393)
T 1vjo_A 185 CREFGTLLLVDTVTSLG----GVP-IFL-----------DAWGVDLAYSCSQKGL-GCSP-GASPFTM---SSRAIEKLQ 243 (393)
T ss_dssp HHHHTCEEEEECTTTTT----TSC-CCT-----------TTTTCSEEECCSSSTT-CSCS-SCEEEEE---CHHHHHHHH
T ss_pred HHHcCCEEEEECCcccc----CcC-Ccc-----------cccCccEEEEcCcccc-cCCC-ceEEEEE---CHHHHHHHh
Confidence 99999999999999932 111 121 2223468999999999 6677 9999995 888888875
Q ss_pred hh----h----------------hhcc-cCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 041151 301 KI----A----------------SIAL-SPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 301 ~~----~----------------~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 358 (463)
.. . .... +++.+.|.++..+++ .... ..++++++++++++++.+.|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~ 313 (393)
T 1vjo_A 244 RRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALR----------LIAQEGLANCWQRHQKNVEYLWERLED 313 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 42 0 1123 678888888888763 1112 2567888999999999999999
Q ss_pred CCCcccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c--CC
Q 041151 359 CRNVVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L--PA 432 (463)
Q Consensus 359 ~pg~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~--~~ 432 (463)
+ |+.+..|++ +.++++ .+|.+ .+..+++..+++++||.+.||..|.. .+++||++ + .+
T Consensus 314 ~-g~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~ 377 (393)
T 1vjo_A 314 I-GLSLHVEKEYRLPTLTTV--CIPDG----------VDGKAVARRLLNEHNIEVGGGLGELA---GKVWRVGLMGFNSR 377 (393)
T ss_dssp T-TCCBSSCGGGBCSSEEEE--ECCTT----------CCHHHHHHHHHHHHCEECEECCGGGT---TTEEEEECCGGGCS
T ss_pred c-CCcccCCccccCCcEEEE--EcCCC----------CCHHHHHHHHHhhCCEEEecCccccC---CCEEEEeCCccCCh
Confidence 8 888877765 234453 33322 12455555555555999999997753 34899994 4 56
Q ss_pred cCcHHHHHHHHHHHH
Q 041151 433 EEDMPAIMESFKKFN 447 (463)
Q Consensus 433 ~e~i~~~~~~l~~~l 447 (463)
++++++++++|++++
T Consensus 378 ~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 378 KESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 667999999998875
No 95
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=4.3e-30 Score=256.78 Aligned_cols=299 Identities=18% Similarity=0.196 Sum_probs=217.5
Q ss_pred cHHHHHHHHHHhhhcC-CCC---CccCC-CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCC
Q 041151 82 PADAIARAKHYLSLTS-GGL---GAYSD-SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~---~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~g 155 (463)
|+.+++++.+.+.... ... ..|+. ..+..++|++++++++ +++++|++|+|+++++..++.++ + ++|
T Consensus 29 ~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~-~~g 101 (390)
T 1elu_A 29 PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITITDNVTTGCDIVLWGLDW-HQG 101 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEEESSHHHHHHHHHHHSCC-CTT
T ss_pred CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC------CCHHHEEEeCChHHHHHHHHhCCCC-CCC
Confidence 7789999888776521 001 14554 3567899999999985 67789999999999999999999 7 899
Q ss_pred CEEEEc-----------------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 156 DGVVLL-----------------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 156 d~Vlvp-----------------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
|+|+++ .|.++ +. .++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 102 d~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~-- 172 (390)
T 1elu_A 102 DEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAA-AVLANHLGP------KTRLVILSHLLWNTGQVLP-- 172 (390)
T ss_dssp CEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHH-HHHHTTCCT------TEEEEEEESBCTTTCCBCC--
T ss_pred CEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchH-HHHHHhcCC------CceEEEEeccccCCceecC--
Confidence 999997 25554 22 5678999 999998876 7999999999999999999
Q ss_pred HHHHHHHHhh----hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 213 NLREILRFCY----QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 213 ~l~~l~~~a~----~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+++|.++|+ ++|+++|+||+|+.... + ..+ ...+..+++.|+||+++ +|.++||+++
T Consensus 173 -~~~i~~l~~~~~~~~~~~li~Dea~~~g~~----~-~~~-----------~~~~~d~~~~s~~K~~~--~~~g~G~~~~ 233 (390)
T 1elu_A 173 -LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL----P-LDF-----------SRLEVDYYAFTGHKWFA--GPAGVGGLYI 233 (390)
T ss_dssp -HHHHHHHHHHCCSSSCCEEEEECTTTBTTB----C-CCT-----------TTSCCSEEEEESSSTTC--CCTTCEEEEE
T ss_pred -HHHHHHHHhhhhhhcCcEEEEEcccccCCc----C-CCh-----------hhcCCCEEEcccccccc--CCCceEEEEE
Confidence 778888888 99999999999985321 1 111 22234589999999553 4566999995
Q ss_pred cCCChhHHHHHHhhh----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 041151 289 TNIPPKTVDEIYKIA----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
++++++.+.... . ..++.+...+.++..+++ .+.. ..+.+++++++
T Consensus 234 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-------~l~~-~~~~~~~~~~~ 302 (390)
T 1elu_A 234 ---HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ-------LHQR-QGTAEERYQAI 302 (390)
T ss_dssp ---CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH-------HHHH-HCCHHHHHHHH
T ss_pred ---CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH-------HHHH-cCCHHHHHHHH
Confidence 777777665421 1 123456667776666652 1101 11256688889
Q ss_pred HHHHHHHHHHhhcCCCccccc---CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNF---TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
+++++++.+.|+++||+.+.. +.++++.| +++ .+ .+..++. +.|.++||.+.+|. +.
T Consensus 303 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~--~~----------~~~~~~~-~~l~~~gi~v~~~~------~~ 362 (390)
T 1elu_A 303 CQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVD--SP----------LGHRAIV-QKLEEQRIYLRTIA------DP 362 (390)
T ss_dssp HHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EEC--SS----------SCHHHHH-HHHHHTTEECEEET------TT
T ss_pred HHHHHHHHHHHHhcCCcEEecCccccccEEEE-EcC--CC----------CCHHHHH-HHHHHCCEEEEecC------CC
Confidence 999999999999988888874 46777666 442 11 1234444 44578899999976 23
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
+++||+++ .+++++++++++|+++
T Consensus 363 ~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 363 DCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CeEEEecccCCCHHHHHHHHHHHHhh
Confidence 48999996 8889999999998753
No 96
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=2.1e-30 Score=257.46 Aligned_cols=302 Identities=13% Similarity=0.087 Sum_probs=211.7
Q ss_pred cHHHHHHHHHHhhhcC------CCCCccCCCCCCHHHHHH-HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 82 PADAIARAKHYLSLTS------GGLGAYSDSRGIPGVRKE-VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~------~~~~~Y~~~~g~~~lr~~-ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
|+.+++++.+.+.... .....|.+..+..++|++ ++++++ .+ +|++|+|+++++..++.+++ ++
T Consensus 22 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~------~~--~v~~~~g~t~a~~~~~~~~~-~~ 92 (371)
T 2e7j_A 22 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG------CD--VARVTNGAREAKFAVMHSLA-KK 92 (371)
T ss_dssp CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT------SS--EEEEESSHHHHHHHHHHHHC-CT
T ss_pred CHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC------CC--EEEEeCChHHHHHHHHHHHh-CC
Confidence 8889999888765421 012345567788999999 999985 33 99999999999999999997 89
Q ss_pred CCEEEEc-------------cCcee---c--C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 155 GDGVVLL-------------FHTTW---K--R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 155 gd~Vlvp-------------~g~~~---~--~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
||+|+++ .|.++ + . .++.+|+ +.|++.+++.... +++++|++++|+||||.+++ ++
T Consensus 93 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~---~~ 167 (371)
T 2e7j_A 93 DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITP-ENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VK 167 (371)
T ss_dssp TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCH-HHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HH
T ss_pred CCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCH-HHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC---HH
Confidence 9999997 56655 3 2 3478899 9999999842110 27899999999999999998 57
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+|.++|+++|++||+||+|+.+.+ ..++..+ + ..++++|+||++ +. +.|+||+++ ++++
T Consensus 168 ~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~--------~---~di~~~s~sK~~-~~-~~~~G~~~~---~~~~ 226 (371)
T 2e7j_A 168 KIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKEI--------G---ADFIVGSGHKSM-AA-SGPIGVMGM---KEEW 226 (371)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTB-----CCCHHHH--------T---CSEEEEEHHHHS-SC-CSSCEEEEE---CTTT
T ss_pred HHHHHHHHcCCeEEEECccccCCC-----CCChhhc--------C---CCEEEecCCcCC-CC-CCCcEEEEE---echh
Confidence 888889999999999999997543 1233332 2 238999999998 54 459999995 7777
Q ss_pred HHH-HHhhhh--h------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCccc
Q 041151 296 VDE-IYKIAS--I------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL--RRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 296 ~~~-l~~~~~--~------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~pg~~~ 364 (463)
++. +..... . ..+.+...+.++..+++ +... +.++++ +++++++.+.|+++ |+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~ 292 (371)
T 2e7j_A 227 AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP-----------HVRE--RIKRWDEEVEKARRFAAEMEKL-GIKQ 292 (371)
T ss_dssp TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH-----------HHHH--HGGGHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hhhhccccccCcccccccccCCcCHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence 666 654432 1 23344444544444442 2222 456677 88899999999988 8888
Q ss_pred ccCC--ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---CCCCcEEE-EEec---CCcCc
Q 041151 365 NFTE--GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---KEGIFHLR-TTIL---PAEED 435 (463)
Q Consensus 365 ~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---~~~~~~lR-is~~---~~~e~ 435 (463)
..+. .+.++|++++ . ..++. +.|.++||.+.| ..|.. ....+++| ++++ .++++
T Consensus 293 ~~~~~~~~~~~~~~~~---~------------~~~~~-~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~ 355 (371)
T 2e7j_A 293 LGDNPHNHDLMFFHAE---V------------LYEIS-KKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEE 355 (371)
T ss_dssp ESSSSCCSSEEEEECH---H------------HHHHH-HHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHH
T ss_pred ecCCCccCceEEEECC---C------------HHHHH-HHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHH
Confidence 7663 3456775543 1 33444 445688999988 44322 11145899 9999 58999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDE 449 (463)
Q Consensus 436 i~~~~~~l~~~l~~ 449 (463)
+++++++|++++++
T Consensus 356 i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 356 VDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 97
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.97 E-value=3.9e-29 Score=250.39 Aligned_cols=302 Identities=10% Similarity=0.082 Sum_probs=219.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC--CCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS--DSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~V 158 (463)
|+.+++++.+.+.. .|. +..+..++|++++++++ ++++ +|++|+|+++++..++.+++ ++||+|
T Consensus 31 ~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~v 97 (393)
T 2huf_A 31 PQRVLDAMSRPILG------HLHPETLKIMDDIKEGVRYLFQ------TNNIATFCLSASGHGGMEATLCNLL-EDGDVI 97 (393)
T ss_dssp CHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESSCHHHHHHHHHHHHC-CTTCEE
T ss_pred CHHHHHHHHhhhcc------CCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEcCcHHHHHHHHHHHHh-CCCCEE
Confidence 78888877655432 232 22356788888888875 5565 89999999999999999997 899999
Q ss_pred EEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 159 VLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 159 lvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
+++ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~ 168 (393)
T 2huf_A 98 LIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSL-DEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGA 168 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHH
T ss_pred EEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCH-HHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHH
Confidence 996 35454 233456899 9999999864 6899999999999999999 778888
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|+++|++||+|++|.... . ...+ ...+..+++.|+||+++|++|+ ||+++ ++++++.+
T Consensus 169 ~~~~~~~~li~D~a~~~~~----~-~~~~-----------~~~~~d~~~~s~sK~l~g~~G~--G~~~~---~~~~~~~~ 227 (393)
T 2huf_A 169 LCHQHNCLLIVDTVASLGG----A-PMFM-----------DRWEIDAMYTGSQKVLGAPPGI--TPVSF---SHRAVERY 227 (393)
T ss_dssp HHHHTTCEEEEECTTTBTT----B-CCCT-----------TTTTCSEEECCSSSTTCCCSSC--EEEEE---CHHHHHHH
T ss_pred HHHHcCCEEEEEcccccCC----C-Ccch-----------hhcCccEEEECCCcccccCCCe--EEEEE---CHHHHHHH
Confidence 9999999999999986421 1 1111 2223458899999986577886 99995 88898888
Q ss_pred Hhhh----hh--------------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHH
Q 041151 300 YKIA----SI--------------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTD 354 (463)
Q Consensus 300 ~~~~----~~--------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 354 (463)
.+.. .. ..+++...+.++.++++ ....+ .++++++++++++++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~ 297 (393)
T 2huf_A 228 KRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIA----------MACEEGLPALIARHEDCAKRLYR 297 (393)
T ss_dssp HTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHH----------HHHHhCHHHHHHHHHHHHHHHHH
Confidence 7641 10 12344555555555542 12222 55678889999999999
Q ss_pred HhhcCCCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c
Q 041151 355 GFNSCRNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L 430 (463)
Q Consensus 355 ~L~~~pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~ 430 (463)
.|+++ |+.+..+. +++++++.+ +.+ .+..++...+++++||.+.+|..|.. .+++||++ +
T Consensus 298 ~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~L~~~~gi~v~~g~~~~~---~~~~Ri~~~~ 361 (393)
T 2huf_A 298 GLQDA-GFELYADPKDRLSTVTTIKV--PQG----------VDWLKAAQYAMKTYLVEISGGLGPTA---GQVFRIGLMG 361 (393)
T ss_dssp HHHHT-TCCBSSCGGGBCTTEEEEEC--CTT----------CCHHHHHHHHHHHHCEECBCCCGGGT---TTEEEEECCG
T ss_pred HHHHc-CCeeccCccccCCcEEEEEc--CCC----------CCHHHHHHHHHHhCCEEEecCccccc---CCEEEEEccc
Confidence 99988 88877664 345666443 321 12455555555667999999987642 34899999 6
Q ss_pred --CCcCcHHHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+++++++++++|+++++++++
T Consensus 362 ~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 362 QNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCC
Confidence 4678899999999999887654
No 98
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.97 E-value=1.2e-28 Score=252.28 Aligned_cols=362 Identities=14% Similarity=0.100 Sum_probs=240.9
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
=..++..++++.+..+...+.++...|.++++++.|.+.. ++ ..+..+..+++.+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~yl----------------D~----~~~~~~~~~~~~~~~a~~ 65 (456)
T 2ez2_A 6 EPFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYI----------------DL----LTDSGTNAMSDKQWAGMM 65 (456)
T ss_dssp CSSCCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSE----------------EC----SCSSSCCCCCHHHHHHHT
T ss_pred CCeeeeeecccCCCCHHHHHHHHHHCCCCcccCCccccee----------------ee----ccccCCccCCHHHHHHhh
Confidence 3467778889988888888888888899999999998732 00 111111123566666554
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
. ....|.+..+..+||++++++++ .+++++|+|+++++..++.+++ ++|| |+.+
T Consensus 66 ----~---~~~~y~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~-~~gd-i~~~~~~~~~~~~ 128 (456)
T 2ez2_A 66 ----M---GDEAYAGSENFYHLERTVQELFG--------FKHIVPTHQGRGAENLLSQLAI-KPGQ-YVAGNMYFTTTRY 128 (456)
T ss_dssp ----T---CCCCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHC-CTTC-EEEESSCCHHHHH
T ss_pred ----c---chhhcccChhHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhC-CCCC-EeccccccchhHH
Confidence 2 22467777788999999999984 3589999999999999999997 8999 4443
Q ss_pred ----cCcee---cCC-----------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCC-CCccCCCHHHHHHHHHHhh
Q 041151 162 ----FHTTW---KRQ-----------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGN-PTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ----~g~~~---~~~-----------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~N-PtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ +.+ ++.+|+ +.|++++++... ..+++|++++|+| |||.+++.+++++|+++|+
T Consensus 129 ~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~ 205 (456)
T 2ez2_A 129 HQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDL-KKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVRELTE 205 (456)
T ss_dssp HHHHTTCEEEECBCGGGGCTTCCCSCTTCBCH-HHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEecccccccccccccccCCCCH-HHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHHHHHHHHH
Confidence 34444 111 368899 999999987200 0249999999999 9999999999999999999
Q ss_pred hCCeEEEecccccc----------cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 223 QENLVLLGDEVYQQ----------NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 223 ~~~~~vi~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+||++||+||+|+. +.+ .+. ++..+...+ .....++++ |++|.+ + +| |+||++. .+
T Consensus 206 ~~~i~li~De~~~~g~~~~~~~~~~~~-~g~---~~~~~~~~~----~~~~d~~~~-S~kk~~-~-~~-~gG~~~~--~~ 271 (456)
T 2ez2_A 206 AHGIKVFYDATRCVENAYFIKEQEQGF-ENK---SIAEIVHEM----FSYADGCTM-SGKKDC-L-VN-IGGFLCM--ND 271 (456)
T ss_dssp HTTCCEEEECTTHHHHHHHHHHHSTTC-TTS---CHHHHHHHH----HTTCSEEEE-ETTTTT-C-CS-SCEEEEE--SC
T ss_pred HcCCeEEEEcccccccccccccccccc-CCc---chhhhhhhh----cccCCEEEE-eCcccC-C-CC-ceeEEEE--CC
Confidence 99999999999986 334 222 221111011 111124554 788864 4 67 7999984 36
Q ss_pred hhHHHHHHhhhhh------cccCChHHHHH-HHHhcCCCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 293 PKTVDEIYKIASI------ALSPNVPAQIF-MGLMVNPLKPGDISYEQFVRES-KGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 293 ~~~~~~l~~~~~~------~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
+++++.+...... ..+.+.....+ +...+ +.+ +...++..++.+.+.+.|++. |+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 336 (456)
T 2ez2_A 272 DEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR--------------EAMQYEYIEHRVKQVRYLGDKLKAA-GVPI 336 (456)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH--------------HHTCHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred HHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHhcC-CCcc
Confidence 8888888765431 11223222222 22221 111 223344455567788888876 8888
Q ss_pred ccCCceeEEeeecc-CChhhHHHHhhcCCCChHHH-----HHHHHHhcCeEeeC-CCCC-------CC--CCCCcEEEEE
Q 041151 365 NFTEGAMYSFPQIR-LPPKAIEAAKRAGKVPDVFY-----CLRLLEATGISTVP-GSGF-------GQ--KEGIFHLRTT 428 (463)
Q Consensus 365 ~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~ll~~~gI~v~p-g~~f-------~~--~~~~~~lRis 428 (463)
..|.+++++|+++. ++.+ . +..++ +..+++++||.+.+ |..| +. .++..++||+
T Consensus 337 ~~p~~~~~~~~~~~~~~~~---------~-~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis 406 (456)
T 2ez2_A 337 VEPVGGHAVFLDARRFCEH---------L-TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLT 406 (456)
T ss_dssp CSSCCSSEEEEEHHHHTTT---------S-CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEE
T ss_pred ccCCCceEEEEEhHHhcCC---------C-ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEE
Confidence 78888999997653 1111 0 12222 44554788999876 4433 11 1234689999
Q ss_pred ec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 429 IL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 429 ~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
++ .+++++++++++|++++++..
T Consensus 407 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 407 IPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99 689999999999999987643
No 99
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.97 E-value=3.6e-30 Score=260.91 Aligned_cols=312 Identities=12% Similarity=0.071 Sum_probs=213.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHH---HHhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLN---CVIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~---~l~~~~gd~V 158 (463)
|+.+++++.+++.........|.+..+..+||++|++++. | . .+++|++|+|+++++..++. .+. ++| .|
T Consensus 59 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~a~~~~~~~a~~~~-~~~-~v 131 (426)
T 1sff_A 59 HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSEAVENAVKIARAAT-KRS-GT 131 (426)
T ss_dssp CHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHHHHHHHHHHHHHHH-TCC-EE
T ss_pred CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHHHHHHHHHHHHHhh-CCC-eE
Confidence 7889999988886532122246666788999999999973 2 2 35899999999999999988 676 777 56
Q ss_pred EEc--------------cCce-------------e---cCC------CcccChHHHHHHHHHHHHhcCCceeEEEEE-CC
Q 041151 159 VLL--------------FHTT-------------W---KRQ------QIGVLIINDLQQSVAQARSKGITVRAMVII-NP 201 (463)
Q Consensus 159 lvp--------------~g~~-------------~---~~~------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p 201 (463)
+++ .|.+ + +.. .+.+|+ +.|++.+++.. .+.++++|+++ +|
T Consensus 132 i~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~-~~l~~~l~~~~-~~~~~~~v~~~p~~ 209 (426)
T 1sff_A 132 IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAI-ASIHRIFKNDA-APEDIAAIVIEPVQ 209 (426)
T ss_dssp EEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHH-HHHHHHHHHTC-CGGGEEEEEECSBC
T ss_pred EEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHH-HHHHHHHHhcc-CCCceEEEEEeccc
Confidence 664 1211 1 111 123688 99999987310 00167888775 67
Q ss_pred CCCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 202 GNPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 202 ~NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
+| || .+++.+++++|.++|++||++||+||+|.++.+. +. ..++.. . + ..+.+.||||++ +. |
T Consensus 210 ~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~-~~~~~~----~----~---~~~di~s~sK~~-~~-G 273 (426)
T 1sff_A 210 GE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRT-GT-LFAMEQ----M----G---VAPDLTTFAKSI-AG-G 273 (426)
T ss_dssp TT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGG----T----T---SCCSEEEECGGG-GT-S
T ss_pred CC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcc-cc-hhhhhh----c----C---CCCCEEEEcccc-cC-C
Confidence 88 99 8899999999999999999999999999976552 21 111111 1 1 123345999999 75 9
Q ss_pred ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS- 358 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 358 (463)
+|+||+++ ++++++.+..... .+++.+.+.|.++.++|+ +... ....++++++++.+.+.|++
T Consensus 274 lriG~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~-----------~~~~-~~~~~~~~~~~~~l~~~l~~~ 338 (426)
T 1sff_A 274 FPLAGVTG---RAEVMDAVAPGGLGGTYAGNPIACVAALEVLK-----------VFEQ-ENLLQKANDLGQKLKDGLLAI 338 (426)
T ss_dssp SCCEEEEE---EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEE---cHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 99999994 7888777754332 466788999998887763 1111 13455566666667666655
Q ss_pred ---CCCcccccCCceeEEeeeccC------ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 359 ---CRNVVCNFTEGAMYSFPQIRL------PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 359 ---~pg~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
++.+....+. ++|+|+++.- |... +..+++ ..|.++||.+.||..| .+++||++
T Consensus 339 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~----------~~~~l~-~~l~~~gi~v~~~~~~-----~~~iRi~~ 401 (426)
T 1sff_A 339 AEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAK----------LTAEIV-ARARDKGLILLSCGPY-----YNVLRILV 401 (426)
T ss_dssp HHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHH----------HHHHHH-HHHHHTTEECEEESTT-----SCEEEECC
T ss_pred HHhCCCeEEEEEE-EEEEEEEEecCccccCCChH----------HHHHHH-HHHHHCCcEEecCCCC-----CCEEEEEC
Confidence 3333334455 5678866631 1110 133444 4455679999998764 24899998
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ .+++++++++++|+++++++
T Consensus 402 ~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 402 PLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHH
Confidence 6 78999999999999988764
No 100
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.97 E-value=2.8e-28 Score=240.71 Aligned_cols=308 Identities=10% Similarity=0.085 Sum_probs=216.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+++++.+.+. .|.+..|..++++++++++.+.+| .++++|++|+|+++++..++.++. ++||+|+++
T Consensus 27 ~~~v~~a~~~~~~-------~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vl~~ 96 (359)
T 1svv_A 27 HPKILDLMARDNM-------TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSLAL-RPWEAVIAT 96 (359)
T ss_dssp CHHHHHHHHHHTT-------CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHHC-CTTEEEEEE
T ss_pred CHHHHHHHHHHHh-------hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHHh-CCCCEEEEc
Confidence 7889998887764 366666778999999999988878 567899999999999999999997 899999997
Q ss_pred ---------------cCcee---cCCCcccChHHHHHHHHHHHH-hcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW---KRQQIGVLIINDLQQSVAQAR-SKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~---~~~~~~~d~~~~l~~~l~~~~-~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ +.+++.+|+ +.|++.+++.. ..+.++++|++++| ||||.+++.+++++|+++|+
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~ 174 (359)
T 1svv_A 97 QLGHISTHETGAIEATGHKVVTAPCPDGKLRV-ADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCK 174 (359)
T ss_dssp TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCH-HHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhcCCCeeEEEeCCCCeecH-HHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHH
Confidence 23344 445788999 99999998720 01113899999999 79999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
++|+++|+||+|..+.++.-........+ ... ..+++.|.+|.. ++ ..+|+++ .++++++.+...
T Consensus 175 ~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~--------~d~~~~s~~K~g-~~--~~~g~l~---~~~~~~~~~~~~ 239 (359)
T 1svv_A 175 EHGLYLFLDGARLASALSSPVNDLTLADI-ARL--------TDMFYIGATKAG-GM--FGEALII---LNDALKPNARHL 239 (359)
T ss_dssp HHTCEEEEECTTHHHHHTSTTCCCCHHHH-HHH--------CSEEEEECTTTT-CS--SCEEEEE---CSGGGCTTHHHH
T ss_pred HhCCEEEEEccchhhhhcCCCcchhhhhh-hhc--------CCEEEEecccCC-CC--CceEEEE---EcccHHHHHHHH
Confidence 99999999999955433110111111111 011 126888999964 43 4579998 488887777654
Q ss_pred h--h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 303 A--S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 303 ~--~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
. . .....+.....++..+++. . ..++++++++++++++.+.| +.+|+.+..|.+++|+|++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~-----~-------~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~- 305 (359)
T 1svv_A 240 IKQRGALMAKGWLLGIQFEVLMKD-----N-------LFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE- 305 (359)
T ss_dssp HHHTTCCCTTTHHHHHHHHHHTST-----T-------HHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-
T ss_pred HhcCCcccccchhhHHHHHHHHhh-----h-------hHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-
Confidence 3 1 1112222233333445531 1 12346778899999999999 556898887888899986543
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++..+++++||.+.+.. ..+.+++||+++ .+++++++++++|+++++++
T Consensus 306 ----------------~~~~~~l~~~~gi~v~~~~----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ----------------NTMIAELNNDFDMYTVEPL----KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ----------------HHHHHHHTTTEECEEEEEE----TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ----------------HHHHHHHHHhcCEEEEecc----cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 2344454444499982210 124568999887 78999999999999887653
No 101
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.97 E-value=4.8e-29 Score=248.47 Aligned_cols=314 Identities=15% Similarity=0.107 Sum_probs=219.8
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ccCC----CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cC
Q 041151 82 PADAIARAKHYLSLTSGGLG-AYSD----SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~-~Y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~ 153 (463)
|+.+++++.+.+........ .|.. .....++|++++++++ +++++|++|+|+++++..++.++. .+
T Consensus 13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~ 86 (382)
T 4eb5_A 13 DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGGTVVFTSGATEANNLAIIGYAMRNAR 86 (382)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CTTEEEEEESSHHHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEcCchHHHHHHHHHHHHhhccC
Confidence 89999999888765211111 2432 2345677888888775 567899999999999999999984 16
Q ss_pred CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+||+|+++ .|.++ .+.++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~--- 156 (382)
T 4eb5_A 87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDV-SFIDQKLRD------DTILVSVQHANNEIGTIQP--- 156 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCH-HHHHHHCCT------TEEEEECCSBCTTTCBBCC---
T ss_pred CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCH-HHHHHHhcC------CCeEEEEeccCCCccccCC---
Confidence 89999996 26555 234566899 999999876 7999999999999999998
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|+++|+++|++ |+|++|+... . ..++... + ..+++.|+||.+ |++| +||+++ ++
T Consensus 157 l~~i~~l~~~~~~~-i~D~a~~~g~----~-~~~~~~~--------~---~di~~~s~sK~~-g~~g--~G~~~~---~~ 213 (382)
T 4eb5_A 157 VEEISEVLAGKAAL-HIDATASVGQ----I-EVDVEKI--------G---ADMLTISSNDIY-GPKG--VGALWI---RK 213 (382)
T ss_dssp HHHHHHHHTTSSEE-EEECTTTBTT----B-CCCHHHH--------T---CSEEEEETGGGT-CCSS--CEEEEE---ET
T ss_pred HHHHHHHHHHCCCE-EEEcchhcCC----c-ccCcccc--------C---CCEEEeehHHhc-CCCc--eEEEEE---cc
Confidence 67888899999999 9999998421 1 1233222 1 348899999987 7777 789886 33
Q ss_pred hH-HHHHHh----hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 041151 294 KT-VDEIYK----IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT 367 (463)
Q Consensus 294 ~~-~~~l~~----~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~ 367 (463)
+. +..+.. ... ...+++...+.++..+++ ...+..++++++++++++++.+.|+++||+.+..+
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 283 (382)
T 4eb5_A 214 EAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAE----------ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGH 283 (382)
T ss_dssp TCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred ccccCceecCCCccccccCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCC
Confidence 32 111100 011 123445555666555542 12234567888899999999999999888887766
Q ss_pred Cc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcEEEEE
Q 041151 368 EG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFHLRTT 428 (463)
Q Consensus 368 ~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~lRis 428 (463)
.+ +.++++.++ .. +..++. +.|.++||.+.+|..|.... +.+++||+
T Consensus 284 ~~~~~~~~~~~~~~--~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (382)
T 4eb5_A 284 PEKRLPNNVNVRFS--YI-----------EGESIV-LSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEET--TS-----------CHHHHH-HHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred cccCCCCEEEEEeC--Cc-----------CHHHHH-HHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence 42 334554332 11 234444 44567899999998754310 24689999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHHHHHHhcccc
Q 041151 429 IL--PAEEDMPAIMESFKKFNDEFMEQYEDYR 458 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~ 458 (463)
++ .+++++++++++|+++++++++..++|+
T Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4eb5_A 350 LGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99 6899999999999999998887555554
No 102
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.97 E-value=1.8e-29 Score=249.83 Aligned_cols=302 Identities=10% Similarity=0.080 Sum_probs=214.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
|+.+++++.+.+. +.|+. ..+..++|++++++++ .+.++++|++|+|+++++..++.+++ ++||.|+
T Consensus 16 ~~~v~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vi 84 (366)
T 1m32_A 16 SRTVKEAMLFDSC------TWDDDYNIGVVEQIRQQLTALAT----ASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVL 84 (366)
T ss_dssp CHHHHHTTCCCCC------TTSHHHHTTTHHHHHHHHHHHHC----SSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEE
T ss_pred CHHHHHHHhhhhc------CCCHHHHHHHHHHHHHHHHHHhC----CCCcCcEEEEecChHHHHHHHHHHhc-CCCCeEE
Confidence 7788887755321 22321 1578899999999984 22234589999999999999999997 8999877
Q ss_pred Ec---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 160 LL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 160 vp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++ .|.++ ....+.+|+ +.|++++++. +++++|++++|+||||.+++ +++|.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~---l~~i~~l 156 (366)
T 1m32_A 85 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV-QAIDAILNAD----PTISHIAMVHSETTTGMLNP---IDEVGAL 156 (366)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCH-HHHHHHHHHC----TTCCEEEEESEETTTTEECC---HHHHHHH
T ss_pred EEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCH-HHHHHHHhcC----CCeEEEEEecccCCcceecC---HHHHHHH
Confidence 64 34444 234556899 9999999861 14789999999999999999 6788889
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|++||++||+||+|+.... + .++ ...+..+++.|+||++++++| +||+++ ++++++.+.
T Consensus 157 ~~~~~~~li~Dea~~~~~~----~-~~~-----------~~~~~di~~~s~~K~~~~~~g--~G~~~~---~~~~~~~~~ 215 (366)
T 1m32_A 157 AHRYGKTYIVDAMSSFGGI----P-MDI-----------AALHIDYLISSANKCIQGVPG--FAFVIA---REQKLAACK 215 (366)
T ss_dssp HHHHTCEEEEECTTTTTTS----C-CCT-----------TTTTCSEEEEESSSTTCCCSS--EEEEEE---EHHHHTTCT
T ss_pred HHHcCCEEEEECCccccCc----C-ccc-----------cccCccEEEecCcccccCCCc--eEEEEE---CHHHHHhhc
Confidence 9999999999999985432 1 121 112245899999998744444 799995 777776654
Q ss_pred hhh------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Q 041151 301 KIA------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 301 ~~~------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
... . ..++.+...+.++.++++ ....+ .++++++++++++++.+.|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 216 GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALK----------ELAKEGGVAARHQRYQQNQRSLVAGMRAL 285 (366)
T ss_dssp TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH----------HHHHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence 321 0 024566677766766653 22233 4567888999999999999988
Q ss_pred CCcccccC---CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 360 RNVVCNFT---EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 360 pg~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
|+.+..+ .+++++|+.++-..+ .+..++. +.|.++||.+.+|..|+ .+++|++++ .+++
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~l~~~gi~v~~~~~~~----~~~iRi~~~~~~~~~ 349 (366)
T 1m32_A 286 -GFNTLLDDELHSPIITAFYSPEDPQ----------YRFSEFY-RRLKEQGFVIYPGKVSQ----SDCFRIGNIGEVYAA 349 (366)
T ss_dssp -TCCBSSCGGGBCSSEEEEECCCCTT----------CCHHHHH-HHHHHTTEECEECCCSS----SCEEEEECCSSCCHH
T ss_pred -CCeeccCchhcCceEEEEEcCccCC----------CCHHHHH-HHHHHCCEEEECCcCCC----CCEEEEecCCCCCHH
Confidence 8877654 366788855431001 1234444 44566799999998773 348999999 5789
Q ss_pred cHHHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFNDE 449 (463)
Q Consensus 435 ~i~~~~~~l~~~l~~ 449 (463)
++++++++|++++++
T Consensus 350 ~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 350 DITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
No 103
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=4.4e-29 Score=248.78 Aligned_cols=302 Identities=9% Similarity=0.060 Sum_probs=215.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
+|+.+++++.+.+... ..+.......++++.++++++ .+.++++|++|+|+++++. ++..++ ++||+|++
T Consensus 13 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~----~~~~~~~v~~~~g~t~al~-~~~~~~-~~gd~vi~ 82 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF----TSKEFVEALAYSLKGLRYVMG----ASKNYQPLIIPGGGTSAME-SVTSLL-KPNDKILV 82 (384)
T ss_dssp CCHHHHHHTTCCSCCT----TSHHHHHHHHHHHHHHHHHHT----CCTTSEEEEEESCHHHHHH-HGGGGC-CTTCEEEE
T ss_pred CCHHHHHHhhcccccc----ccHHHHHHHHHHHHHHHHHhC----CCCCCcEEEEcCCcHHHHH-HHHhhc-CCCCEEEE
Confidence 3788887776544321 111112334566777777664 3322389999999999999 999987 89999999
Q ss_pred c---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|.++|
T Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~ 153 (384)
T 3zrp_A 83 VSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKP-GEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDVINKI 153 (384)
T ss_dssp ECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCH-HHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHHHHHH
T ss_pred ecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCH-HHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHH
Confidence 6 35554 334567899 9999999874 6999999999999999998 77788899
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH--
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI-- 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l-- 299 (463)
++||++||+|++|+.... ..++ ...+..+++.|+||+++|++| +||+++ ++++++.+
T Consensus 154 ~~~~~~li~D~a~~~~~~-----~~~~-----------~~~~~d~~~~s~~K~~~~~~g--~g~~~~---~~~~~~~~~~ 212 (384)
T 3zrp_A 154 RKYVELIVVDGVSSVGAE-----EVKA-----------EEWNVDVYLTASQKALGSAAG--LGLLLL---SPKALSILDS 212 (384)
T ss_dssp GGGEEEEEEECTTTTTTS-----CCCT-----------TTTTCSEEEEETTSTTCCCSS--EEEEEE---CHHHHHHHHH
T ss_pred HhcCCEEEEECcccccCc-----cccc-----------cccCCCEEEecCcccccCCCc--eEEEEE---CHHHHHHhcC
Confidence 999999999999985432 1111 212245899999999854445 899994 88887777
Q ss_pred -----------Hhhhh----------hc-ccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 041151 300 -----------YKIAS----------IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGF 356 (463)
Q Consensus 300 -----------~~~~~----------~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L 356 (463)
..... .. .+.+...+.++..+++ ....+ +++++++++++++++.+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L 282 (384)
T 3zrp_A 213 QNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFR----------LIEKEGIENRIKRHTMVASAIRAGL 282 (384)
T ss_dssp CCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHH----------HHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 22221 11 2445555555555542 12222 5678889999999999999
Q ss_pred hcCCCcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 357 NSCRNVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 357 ~~~pg~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
+++ |+.+..+. +++++|+.++ .. +..++. +.|.++||.+.+|..+.. +++||++.
T Consensus 283 ~~~-g~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~----~~iRi~~~~~ 343 (384)
T 3zrp_A 283 EAL-GLEIVARRPESYSNTVTGVILK--VA-----------DPQKVL-AGTVNEGVEFAPGVHPAF----KYFRIGHMGW 343 (384)
T ss_dssp HHT-TCCBSCSSGGGBCSSEEEEECS--SS-----------CHHHHH-HHHHTTTCCCEECCCTTC----CEEEEECCSS
T ss_pred HHC-CCeEccCcccccCccEEEEECC--CC-----------CHHHHH-HHHHHCCEEEecCCCCCc----CEEEEecccc
Confidence 998 88887776 4566664443 21 234444 456667999999875432 58999988
Q ss_pred CCcCcHHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+++++++++++|+++++++.
T Consensus 344 ~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 344 VTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcC
Confidence 788999999999999988764
No 104
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=6.6e-29 Score=248.62 Aligned_cols=303 Identities=9% Similarity=0.015 Sum_probs=215.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+++++.+.+.. ...|....+..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~Vl~~ 89 (392)
T 2z9v_A 21 YPEVLRGLGRTVLY----DYDPAFQLLYEKVVDKAQKAMR------LSNKPVILHGEPVLGLEAAAASLI-SPDDVVLNL 89 (392)
T ss_dssp CHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHTT------CSSCCEEESSCTHHHHHHHHHHHC-CTTCCEEEE
T ss_pred CHHHHHHHhccccc----cccHHHHHHHHHHHHHHHHHhC------CCCCEEEEeCCchHHHHHHHHHhc-CCCCEEEEe
Confidence 78888877665443 1122223356788888888875 567899999999999999999997 899999986
Q ss_pred ---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ ...++.+|+ +.|++.+++ .+++++|++++|+||||.+++ +++|.++|+
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 161 (392)
T 2z9v_A 90 ASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDP-QAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVS 161 (392)
T ss_dssp ESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCH-HHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHH
T ss_pred cCCcccHHHHHHHHHcCCceEEeeCCCCCCCCH-HHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHH
Confidence 24444 233456899 999999964 116899999999999999998 678888999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
++|++||+|++|+.... ..++.. + +..+++.|+||+++|++| +||+++ ++++++.+...
T Consensus 162 ~~~~~li~D~a~~~g~~-----~~~~~~----~-------~~d~~~~s~sK~~~~~~g--~G~l~~---~~~~~~~l~~~ 220 (392)
T 2z9v_A 162 AHGAYLIVDAVSSFGGM-----KTHPED----C-------KADIYVTGPNKCLGAPPG--LTMMGV---SERAWAKMKAN 220 (392)
T ss_dssp HTTCEEEEECTTTBTTB-----SCCGGG----G-------TCSEEEECSSSTTCCCSC--CEEEEE---CHHHHHHHHTC
T ss_pred HcCCeEEEEcccccCCc-----cccccc----c-------cceEEEecCcccccCCCc--eeEEEE---CHHHHHHhhhc
Confidence 99999999999984221 112211 1 134889999997755666 499995 88888888642
Q ss_pred h--------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC
Q 041151 303 A--------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 303 ~--------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
. . ...+.+...+.++..+++ ....+ .++++++++++++++.+.|+++
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 289 (392)
T 2z9v_A 221 PLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD----------LYLNEGPEAVWARHALTAKAMRAGVTAM- 289 (392)
T ss_dssp TTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHhccHHHHHHHHHHHHHHHHHHHHHc-
Confidence 1 1 123344555555555542 22333 5667888999999999999988
Q ss_pred CcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c--CCc
Q 041151 361 NVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L--PAE 433 (463)
Q Consensus 361 g~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~--~~~ 433 (463)
|+.+..|. .+.++|+.+ |.+. +..++...+.+++||.+.+|..+. ..+++||++ + .++
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~l~~~L~~~~gi~v~~g~~~~---~~~~lRi~~~~~~~~~ 354 (392)
T 2z9v_A 290 GLSVWAASDSIASPTTTAVRT--PDGV----------DEKALRQAARARYGVVFSSGRGET---LGKLTRIGHMGPTAQP 354 (392)
T ss_dssp TCCBSSSSGGGBCTTEEEEEC--CTTC----------CHHHHHHHHHHHHCEECEECCGGG---TTTEEEEECCGGGCSH
T ss_pred CCeeccCCccccCCceEEEEC--CCCC----------CHHHHHHHHHhcCCEEEecCCCCC---CCCeEEEeCcccccCH
Confidence 88877633 355666443 3221 244555555544599999988653 235899995 4 789
Q ss_pred CcHHHHHHHHHHHHHHH
Q 041151 434 EDMPAIMESFKKFNDEF 450 (463)
Q Consensus 434 e~i~~~~~~l~~~l~~~ 450 (463)
+++++++++|+++++++
T Consensus 355 ~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 355 IYAIAALTALGGAMNAA 371 (392)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998764
No 105
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=7.6e-29 Score=248.52 Aligned_cols=305 Identities=12% Similarity=0.109 Sum_probs=220.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCC-C-CCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSD-S-RGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
+++.+++++.+.+.. .|.+ . ....++|++++++++ .+++ +|++|+|+++++..++.+++ ++||+
T Consensus 29 ~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~-~~gd~ 95 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS------NFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLL-EEGDR 95 (396)
T ss_dssp CCHHHHHHTTSCCCC------TTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHC-CTTCE
T ss_pred CCHHHHHHhcccccc------CCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhc-CCCCe
Confidence 377777766544321 2432 1 236789999999986 5677 89999999999999999997 89999
Q ss_pred EEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHH
Q 041151 158 VVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218 (463)
Q Consensus 158 Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~ 218 (463)
|+++ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|.
T Consensus 96 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~ 166 (396)
T 2ch1_A 96 VLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL-ETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVG 166 (396)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHH
T ss_pred EEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCH-HHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHH
Confidence 9997 35454 334567999 9999999864 6899999999999999999 77888
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
++|+++|++||+||+|.... .+ ..+ ...+..+++.|++|++++.+| +||+++ ++++++.
T Consensus 167 ~l~~~~~~~li~Dea~~~g~----~~-~~~-----------~~~~~d~~~~s~~K~~~~~~g--~g~~~~---~~~~~~~ 225 (396)
T 2ch1_A 167 QICHQHDCLLIVDAVASLCG----VP-FYM-----------DKWEIDAVYTGAQKVLGAPPG--ITPISI---SPKALDV 225 (396)
T ss_dssp HHHHHTTCEEEEECTTTBTT----BC-CCT-----------TTTTCCEEECCCC-CCCCCSS--CEEEEE---CHHHHHH
T ss_pred HHHHHcCCEEEEEccccccC----Cc-cch-----------hhcCcCEEEEcCCccccCCCC--eEEEEE---CHHHHHh
Confidence 89999999999999998321 11 122 111123677999998754445 699985 7788887
Q ss_pred HHhhh-----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHH
Q 041151 299 IYKIA-----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMT 353 (463)
Q Consensus 299 l~~~~-----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 353 (463)
+.... . ...+++...|.++.++++ ... ...++++++++++++++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~ 295 (396)
T 2ch1_A 226 IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALA----------QIAEEGLENQIKRRIECAQILY 295 (396)
T ss_dssp HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHH
Confidence 75420 1 123466777877777763 111 235667888999999999
Q ss_pred HHhhcCCCcccccCCce----eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 354 DGFNSCRNVVCNFTEGA----MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 354 ~~L~~~pg~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+.|+++ |+.+..++++ .++++. +|.+ .+..++...+++++||.+.+|..+. ..+++||++
T Consensus 296 ~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~~~~L~~~~gi~v~~g~~~~---~~~~iRi~~ 359 (396)
T 2ch1_A 296 EGLGKM-GLDIFVKDPRHRLPTVTGIM--IPKG----------VDWWKVSQYAMNNFSLEVQGGLGPT---FGKAWRVGI 359 (396)
T ss_dssp HHHHHH-TCCBSSCSGGGBCTTEEEEE--CCTT----------CCHHHHHHHHHHHHCBCCBCCCGGG---TTTEEEEEC
T ss_pred HHHHHC-CCeeccCCccccCCceEEEE--cCCC----------CCHHHHHHHHHHhCCEEEecCcccc---CCCEEEEEC
Confidence 999988 8888877664 255643 3322 1245565565666799999987543 234899999
Q ss_pred -c--CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 430 -L--PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 430 -~--~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
+ .+++++++++++|+++++++...|
T Consensus 360 ~~~~~~~e~i~~~~~~l~~~l~~~~~~~ 387 (396)
T 2ch1_A 360 MGECSTVQKIQFYLYGFKESLKATHPDY 387 (396)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCccE
Confidence 4 478899999999999998775443
No 106
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.96 E-value=4.3e-28 Score=241.81 Aligned_cols=324 Identities=12% Similarity=0.079 Sum_probs=212.8
Q ss_pred HHHHhcc-cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCH
Q 041151 32 ELQKEGK-KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIP 110 (463)
Q Consensus 32 ~~~~~~~-~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~ 110 (463)
.+++.|. +++|++.|.|+. |. |+.+++++. .+ ..| .
T Consensus 21 ~i~~~g~~~v~~~~~~~~~~------------------------~~-----~~~v~~a~~----~~----~~~------~ 57 (374)
T 2aeu_A 21 ILNEKGRDALYDLSGLSGGF------------------------LI-----DEKDKALLN----TY----IGS------S 57 (374)
T ss_dssp HHHHTCGGGCEECSSCCCCC------------------------CC-----CHHHHHHHT----ST----THH------H
T ss_pred HHhccCccceeeecccCCCC------------------------CC-----CHHHHHHHH----Hh----cCc------h
Confidence 3456787 899999987664 43 888888775 11 111 3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c-------------Ccee-cCCCccc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F-------------HTTW-KRQQIGV 173 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~-------------g~~~-~~~~~~~ 173 (463)
.++++++++..+.+|.+ +++++++++|+++++..++.++ +||+|+++ + |+++ .. .
T Consensus 58 ~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v----~ 129 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES----D 129 (374)
T ss_dssp HHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE----S
T ss_pred HHHHHHHHHHHHHhCCC-CcceEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe----C
Confidence 45566666665555643 4579999999999999999977 89999997 2 2222 11 5
Q ss_pred ChHHHHHHHHHHHHhcCCceeE-EEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRA-MVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~-i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
|+ +.|++. ++ ++++ |++++||||||. +.+++++|.++|++||++||+||+|..+..+.... .+....
T Consensus 130 d~-~~l~~~-~~------~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~- 197 (374)
T 2aeu_A 130 KV-GEILNK-ID------KDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ-PPALKL- 197 (374)
T ss_dssp CH-HHHHTT-CC------TTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC-CCHHHH-
T ss_pred CH-HHHHhc-CC------CccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccccc-CCcccc-
Confidence 88 998887 43 7899 889999999997 77899999999999999999999998763100001 112221
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
. ..++++|+||++ +|+|+||++ +++++++.+.+... ...+++.+.|.++..+++... .
T Consensus 198 -------~---~di~~~S~sK~l---~g~~~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-----~ 256 (374)
T 2aeu_A 198 -------G---ADLVVTSTDKLM---EGPRGGLLA---GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN-----L 256 (374)
T ss_dssp -------T---CSEEEEETTSSS---SSCSCEEEE---EEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC-----H
T ss_pred -------C---CcEEEecCcccc---cCcceEEEE---ECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHh-----H
Confidence 2 248889999987 478999998 58899999987765 445678888888887764211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSC---RNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 407 (463)
+...+..+..+..++++++.+.+.|..+ +|+.+. .+.|.++.|.++ +.. .+. .++.+++..+++++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~--~~~-~~~------~~~~~~~~~ll~~~g 327 (374)
T 2aeu_A 257 ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK--DDT-INI------KKLIEIGFNLLKNYG 327 (374)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES--SHH-HHH------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc--ccc-ccc------cchHHHHHHHHHhCC
Confidence 0011111111111111245556666554 356654 455656666432 221 000 012346667888899
Q ss_pred eEeeCCCCCCCCCCCcEEEEEecC---CcCcHHHHHHHHHHHHHHH
Q 041151 408 ISTVPGSGFGQKEGIFHLRTTILP---AEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 408 I~v~pg~~f~~~~~~~~lRis~~~---~~e~i~~~~~~l~~~l~~~ 450 (463)
|.+.||..|.. +.+++||+++. .+.+++++.+.|+++++++
T Consensus 328 V~v~~g~~~~~--~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 328 IITITVAGMPG--ASKSLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp EECSTTSSSCS--SCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCC--CCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999987743 34589999982 2334777777777766654
No 107
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.96 E-value=1.9e-29 Score=251.23 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=220.4
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+|+.++||+.|.|.. +... .++.+.+++.+.+.........|+ ..+..+++++
T Consensus 26 ~g~~~ld~~~~~~~~----------------------~~g~----~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~l~~~ 78 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVN----------------------SLGH----AYPKLTEALKEQVEKLLHVSNLYE-NPWQEELAHK 78 (375)
T ss_dssp TCCEEEESSHHHHTC----------------------TTCB----SCHHHHHHHHHHHHHCSCCCTTBC-CHHHHHHHHH
T ss_pred CCCEEEEcCCccccc----------------------ccCC----CCHHHHHHHHHHHHhccccCcccC-CHHHHHHHHH
Confidence 567789999887742 0110 278899999888765322234574 3467889988
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH--hc---CCC-CEEEEc---cCcee---------c--C-------
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV--IR---GEG-DGVVLL---FHTTW---------K--R------- 168 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~---~~g-d~Vlvp---~g~~~---------~--~------- 168 (463)
++++++ + +++|++|+|+++++..++.++ .. +|| |+|+++ +.... . .
T Consensus 79 la~~~g------~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 151 (375)
T 2eh6_A 79 LVKHFW------T-EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV 151 (375)
T ss_dssp HHHTSS------S-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC
T ss_pred HHhhcC------C-CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC
Confidence 888863 3 489999999999999998753 22 578 999997 11111 0 0
Q ss_pred CCcc----cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCC
Q 041151 169 QQIG----VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243 (463)
Q Consensus 169 ~~~~----~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~ 243 (463)
.+.. .|+ +.|++++++ ++++|++++|+||||.+ .+.+++++|+++|+++|+++|+||+|.++.+. +.
T Consensus 152 ~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~ 223 (375)
T 2eh6_A 152 PGFSYAKLNDI-DSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRT-GE 223 (375)
T ss_dssp SSEEEECTTCH-HHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS
T ss_pred CCceeCCCchH-HHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC-Cc
Confidence 0122 588 999988875 79999999999999998 56888999999999999999999999975431 11
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcC
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~ 322 (463)
..++.. + +....++ ||||.+ + +|+|+||+++ ++++++.+.... ..+++++.+.|.++.++|+
T Consensus 224 -~~~~~~----~----~~~~d~~---s~SK~~-~-~g~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (375)
T 2eh6_A 224 -FYAYQH----F----NLKPDVI---ALAKGL-G-GGVPIGAILA---REEVAQSFTPGSHGSTFGGNPLACRAGTVVVD 286 (375)
T ss_dssp -SSGGGG----G----TCCCSEE---EECGGG-G-TTSCCEEEEE---EHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHH
T ss_pred -chhhhh----c----CCCCCEE---EEcccc-c-CCCCeEEEEE---cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 112221 1 2111222 889999 6 6999999995 777777765532 2356778888888877653
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
... +.+++++++++++.+.|++++. ...+ ..++++|++++ . +..+++..
T Consensus 287 -----------~~~---~~~~~~~~~~~~l~~~L~~~~~-~~~~-~~g~~~~~~~~--~------------~~~~~~~~- 335 (375)
T 2eh6_A 287 -----------EVE---KLLPHVREVGNYFKEKLKELGK-GKVK-GRGLMLGLELE--R------------ECKDYVLK- 335 (375)
T ss_dssp -----------HHH---HHHHHHHHHHHHHHHHHHHTTS-SEEE-EETTEEEEECS--S------------CCHHHHHH-
T ss_pred -----------HHH---HHHHHHHHHHHHHHHHHHHHhc-CCce-EEEEEEEEEEc--C------------cHHHHHHH-
Confidence 111 5677788889999999988743 3333 34567775543 1 13455444
Q ss_pred HHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 403 LEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 403 l~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
|.++||.+.|+. .+++||+++ .+++++++++++|+++
T Consensus 336 l~~~gi~~~~~~-------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 336 ALEKGLLINCTA-------GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 556899999852 348999977 7889999999999875
No 108
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=3.2e-29 Score=246.92 Aligned_cols=297 Identities=11% Similarity=0.090 Sum_probs=213.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+++++.+.+.. . ..|....+..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 13 ~~~v~~a~~~~~~~---~-~~~~~~~~~~~l~~~la~~~g------~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~ 81 (352)
T 1iug_A 13 HPKALEALARPQLH---H-RTEAAREVFLKARGLLREAFR------TEGEVLILTGSGTLAMEALVKNLF-APGERVLVP 81 (352)
T ss_dssp CHHHHHHHHSCCCC---T-TSHHHHHHHHHHHHHHHHHHT------CSSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred CHHHHHHhccCCCC---c-cCHHHHHHHHHHHHHHHHHhC------CCCceEEEcCchHHHHHHHHHhcc-CCCCeEEEE
Confidence 88888888766542 1 122223456789999999885 567899999999999999999997 899999996
Q ss_pred ---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ ...++.+|+ +.|++ + ++++|++++|+||||.+++ +++|.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~---~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 148 (352)
T 1iug_A 82 VYGKFSERFYEIALEAGLVVERLDYPYGDTPRP-EDVAK---E------GYAGLLLVHSETSTGALAD---LPALARAFK 148 (352)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCT-TTSCC---S------SCSEEEEESEETTTTEECC---HHHHHHHHH
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHhc---c------CCcEEEEEEecCCcceecC---HHHHHHHHH
Confidence 35555 233456788 88877 3 7899999999999999998 678888999
Q ss_pred hC--CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH--
Q 041151 223 QE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE-- 298 (463)
Q Consensus 223 ~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~-- 298 (463)
++ |++||+|++|+.... + ..+.. + +..+++.|+||++++++| +||+++ ++++++.
T Consensus 149 ~~~~~~~li~D~a~~~~~~----~-~~~~~----~-------~~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~~~ 207 (352)
T 1iug_A 149 EKNPEGLVGADMVTSLLVG----E-VALEA----M-------GVDAAASGSQKGLMCPPG--LGFVAL---SPRALERLK 207 (352)
T ss_dssp HHCTTCEEEEECTTTBTTB----C-CCSGG----G-------TCSEEEEESSSTTCCCSC--EEEEEE---CHHHHHTCC
T ss_pred hhCCCCEEEEECCccccCc----c-eeccc----c-------CeeEEEecCcccccCCCc--eeEEEE---CHHHHHHhh
Confidence 99 999999999974211 1 11111 1 134789999997645445 799995 7776654
Q ss_pred -------HHh----h-hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 299 -------IYK----I-AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 299 -------l~~----~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
+.. . .. ..++.+...+.++.++++ ....+.++++++++++++++.+.|+++ |+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 276 (352)
T 1iug_A 208 PRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE----------EVLPRLEEHLALKAWQNALLYGVGEEG-GLRPV 276 (352)
T ss_dssp CCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEES
T ss_pred CCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 221 1 11 234566677776666653 112225567888999999999999988 88887
Q ss_pred cCC-ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHH
Q 041151 366 FTE-GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMES 442 (463)
Q Consensus 366 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~ 442 (463)
.+. .+.++|+.+ +.+. +..++. +.|.++||.+.+|..+. +.+++||+++ .+++++++++++
T Consensus 277 ~~~~~~~~~~~~~--~~~~----------~~~~~~-~~l~~~gi~v~~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~ 340 (352)
T 1iug_A 277 PKRFSPAVAAFYL--PEGV----------PYARVK-EAFAQRGAVIAGGQGPL---KGKVFRLSLMGAYDRYEALGVAGM 340 (352)
T ss_dssp CSSBCTTCEEEEC--CTTC----------CHHHHH-HHHHTTTEECEECCGGG---TTTEEEECCCSSCCHHHHHHHHHH
T ss_pred ccccCCeEEEEEc--CCCC----------CHHHHH-HHHHHCCEEEEeCCCcc---CCCEEEEEccccCCHHHHHHHHHH
Confidence 764 566777544 3221 234544 44566799999988332 3458999999 578999999999
Q ss_pred HHHHHHHH
Q 041151 443 FKKFNDEF 450 (463)
Q Consensus 443 l~~~l~~~ 450 (463)
|+++++++
T Consensus 341 l~~~~~~~ 348 (352)
T 1iug_A 341 FREVLEEI 348 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 109
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=3.8e-29 Score=253.07 Aligned_cols=306 Identities=14% Similarity=0.124 Sum_probs=213.4
Q ss_pred cHHHHHHHHHHhh--hcCCCC----C--ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLS--LTSGGL----G--AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~--~~~~~~----~--~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
|+.+++++.+.+. ...... . .|.......++++.++++++ +++++|++|+|+++++..++.++. +
T Consensus 35 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~v~~~~ggt~a~~~a~~~l~-~ 107 (423)
T 3lvm_A 35 DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPREIVFTSGATESDNLAIKGAA-N 107 (423)
T ss_dssp CHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC------CCCCeEEEeCChHHHHHHHHHHHH-H
Confidence 8889998887766 310000 0 01111233567777777765 577899999999999999999886 4
Q ss_pred ----CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 154 ----EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 154 ----~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
+||.|+++ .|.++ ...++.+|+ +.|++++++ ++++|++++|+||||.++
T Consensus 108 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~ 180 (423)
T 3lvm_A 108 FYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDL-KELEAAMRD------DTILVSIMHVNNEIGVVQ 180 (423)
T ss_dssp HHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCH-HHHHHHCCT------TEEEEECCSBCTTTCBBC
T ss_pred hhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCH-HHHHHhcCC------CcEEEEEeCCCCCCcccc
Confidence 89999986 26665 344677899 999999987 799999999999999999
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +++|+++|+++|++||+||+|+.... .... ...+..+++.|+||.+ |++| +||+++
T Consensus 181 ~---l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~-----------~~~~~di~~~s~sK~~-g~~g--~G~~~~- 237 (423)
T 3lvm_A 181 D---IAAIGEMCRARGIIYHVDATQSVGKL-----PIDL-----------SQLKVDLMSFSGHKIY-GPKG--IGALYV- 237 (423)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTTTTS-----CCCT-----------TTSCCSEEEEESTTTT-SCSS--CEEEEE-
T ss_pred C---HHHHHHHHHHcCCEEEEEhhhhcCCC-----CcCh-----------hhcCCCEEEechHHhc-CCCC--eEEEEE-
Confidence 9 67788899999999999999875322 1111 2223458999999977 7777 899985
Q ss_pred CCChhHHHHHHhhhh--------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 290 NIPPKTVDEIYKIAS--------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
+++.++.+..... ...+.+...+.++..+++ ....+.++++++++++++++.+.|+++||
T Consensus 238 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 305 (423)
T 3lvm_A 238 --RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR----------IAKEEMATEMERLRGLRNRLWNGIKDIEE 305 (423)
T ss_dssp --CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred --eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6555555543321 134455666666655542 22333567889999999999999999989
Q ss_pred cccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CC
Q 041151 362 VVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GI 422 (463)
Q Consensus 362 ~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~ 422 (463)
+.+..+.+ +.++++.+. .. +..++ ...|.+ |.+.+|..|.... ..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~l-~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (423)
T 3lvm_A 306 VYLNGDLEHGAPNILNVSFN--YV-----------EGESL-IMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAH 369 (423)
T ss_dssp EEEESCSTTBCTTEEEEEET--TS-----------CHHHH-HHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHH
T ss_pred EEEeCCccccCCCeEEEEeC--CC-----------CHHHH-HHHHhh--heeccCccccCCCccccHHHHHhCCCccccC
Confidence 88876654 223332232 11 23343 444555 9999998765410 03
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+++||+++ .+++++++++++|+++++++++
T Consensus 370 ~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 370 SSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 68999999 6779999999999999987653
No 110
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=4.3e-28 Score=241.13 Aligned_cols=307 Identities=15% Similarity=0.103 Sum_probs=209.3
Q ss_pred cHHHHHHHHHHhhhcCCCC-CccCCCCC----CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---C
Q 041151 82 PADAIARAKHYLSLTSGGL-GAYSDSRG----IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~-~~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~ 153 (463)
|+.+++++.+.+....... ..|....+ ..++++.++++++ +++++|++|+|+++++..++.++.. +
T Consensus 13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~~~a~~~~~~~~~~~~~~ 86 (382)
T 4hvk_A 13 DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGGTVVFTSGATEANNLAIIGYAMRNAR 86 (382)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT------CTTEEEEEESSHHHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC------CCcCeEEEECCchHHHHHHHHHhhhhhcC
Confidence 8899999988876521100 11211111 2255555555554 5678999999999999999998852 6
Q ss_pred CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+||+|+++ .|.++ ....+.+|+ ++|++++++ ++++|++++|+||||.+++
T Consensus 87 ~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~--- 156 (382)
T 4hvk_A 87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDV-SFIDQKLRD------DTILVSVQHANNEIGTIQP--- 156 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCH-HHHHHHCCT------TEEEEECCSBCTTTCBBCC---
T ss_pred CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCH-HHHHHHhcc------CceEEEEECCCCCceeeCC---
Confidence 99999995 36666 345677899 999999886 7999999999999999998
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|.++|+++|+ ||+|++|+.... ..++... + ..+++.|+||.+ |++| +|++++ ++
T Consensus 157 ~~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~~--------~---~d~~~~s~~K~~-g~~g--~g~~~~---~~ 213 (382)
T 4hvk_A 157 VEEISEVLAGKAA-LHIDATASVGQI-----EVDVEKI--------G---ADMLTISSNDIY-GPKG--VGALWI---RK 213 (382)
T ss_dssp HHHHHHHHSSSSE-EEEECTTTBTTB-----CCCHHHH--------T---CSEEEEESGGGT-SCTT--CEEEEE---ET
T ss_pred HHHHHHHHHHcCE-EEEEhHHhcCCC-----CCCchhc--------C---CCEEEEeHHHhc-CCCc--eEEEEE---cC
Confidence 6678889999999 999999875322 1223221 1 348999999977 7777 666664 22
Q ss_pred hHHHHHHhhh-------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 294 KTVDEIYKIA-------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 294 ~~~~~l~~~~-------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
+. .+.... . ...+.+...+.++.+++. ......++++++++++++++.+.|+++||+.+.
T Consensus 214 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 281 (382)
T 4hvk_A 214 EA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE----------ITAMEWREEAERLRRLRDRIIDNVLKIEESYLN 281 (382)
T ss_dssp TC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred cc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 22 111111 0 133445566666655542 123445678889999999999999998898887
Q ss_pred cCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC----------------CcEEE
Q 041151 366 FTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG----------------IFHLR 426 (463)
Q Consensus 366 ~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~----------------~~~lR 426 (463)
.+.+ +.++++.+ +.. +..+ +.+.|.++||.+.+|..|..... .+++|
T Consensus 282 ~~~~~~~~~~~~~~~--~~~-----------~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (382)
T 4hvk_A 282 GHPEKRLPNNVNVRF--SYI-----------EGES-IVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLL 347 (382)
T ss_dssp SCSSSBCTTEEEEEE--TTC-----------CHHH-HHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEE
T ss_pred CCccccCCCEEEEEE--CCC-----------CHHH-HHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEE
Confidence 6654 22334333 211 2334 44667788999999988765310 46899
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
|+++ .+++++++++++|+++++++.+.
T Consensus 348 l~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 348 LTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 67899999999999999887764
No 111
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.96 E-value=1.3e-29 Score=250.79 Aligned_cols=300 Identities=13% Similarity=0.108 Sum_probs=207.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE--EE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG--VV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~--Vl 159 (463)
++.+++++.+.+. ...|++..+..+|+++++++++ . +..++++|+++++..++.+++ .+||. |+
T Consensus 28 ~p~v~~ai~~~~~-----~~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~~g~~a~~~a~~~~~-~~g~~~vvi 93 (359)
T 3pj0_A 28 LTEALQNIDDNLE-----SDIYGNGAVIEDFETKIAKILG------K--QSAVFFPSGTMAQQIALRIWA-DRKENRRVA 93 (359)
T ss_dssp HHHHTTTSCTTCB-----CCBTTBSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHH-HHHTCCEEE
T ss_pred CHHHHHHHHhhcc-----cCcccCCHHHHHHHHHHHHHhC------C--CcEEEeCCHHHHHHHHHHHHH-hcCCCcEEE
Confidence 5666666655332 2457666678899999999985 2 223455777899999999997 78876 55
Q ss_pred Ec----------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHH
Q 041151 160 LL----------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILR 219 (463)
Q Consensus 160 vp----------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~ 219 (463)
++ .|.++ +...+.+|+ +.|+++ .+ ++++|++++||||| |.+++.+++++|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~ 165 (359)
T 3pj0_A 94 YHPLSHLEIHEQDGLKELQQITPLLLGTANQLLTI-DDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEKISE 165 (359)
T ss_dssp ECTTCHHHHSSTTHHHHHHCCEEEECSCTTSCCCH-HHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHHHHH
T ss_pred EeccceeeehhcchHHHhcCceEEecCCcCCCcCH-HHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHHHHH
Confidence 53 24444 445678999 999987 33 79999999999998 79999999999999
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|++||++||+|++|..+... ....+...+... . .+++.|+||++ +.++ .||++ +++++++.+
T Consensus 166 ~~~~~~~~li~D~a~~~~~~~--~~~~~~~~~~~~------~---d~~~~s~sK~~-~~~~--gg~~~---~~~~l~~~~ 228 (359)
T 3pj0_A 166 YCHEQGISLHLDGARLWEITP--FYQKSAEEICAL------F---DSVYVSFYKGI-GGIA--GAILA---GNDDFVQEA 228 (359)
T ss_dssp HHHHHTCEEEEEETTCGGGHH--HHTCCHHHHHTT------C---SEEEEESSSTT-CCSS--CEEEE---ECHHHHHHH
T ss_pred HHHHcCCEEEEECcchhcchh--hhCCCHHHhhcc------C---CEEEEeccccC-CCcc--eEEEE---CCHHHHHHH
Confidence 999999999999998754310 001123232211 1 14567999998 5443 27777 599999999
Q ss_pred Hhhhh-hcccCC--hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEee
Q 041151 300 YKIAS-IALSPN--VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFP 375 (463)
Q Consensus 300 ~~~~~-~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~ 375 (463)
.+... ...+.. ...+.++...+ +.+. +..+++.++++.+.+.|+++||+.+. .|.++.++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~a~~~~l----------~~~~----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 294 (359)
T 3pj0_A 229 KIWKRRYGGDLISLYPYILSADYYF----------EKRI----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHV 294 (359)
T ss_dssp HHHHHHTTCCCSCCHHHHHHHHHHH----------HHHG----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEE
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHH----------HHHH----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEE
Confidence 87653 222222 22222222222 1221 23445788889999999998899885 5667778887
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-----CCcCcHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-----PAEEDMPAIMESFKKF 446 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-----~~~e~i~~~~~~l~~~ 446 (463)
+++.+... +...+.+.|.++||.++||..|+. ++..++|++++ .+.+++++++++|++.
T Consensus 295 ~~~~~~~~-----------~~~~l~~~l~~~GV~v~~g~~~~~-~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 295 YFENSADE-----------IGAILTKIQDETGVGISGYLQEKS-ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EESSCHHH-----------HHHHHHHHHHHHCEECCSCCEEEE-TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred EecCccch-----------hHHHHHHHHHhcCcEecCCccccC-CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 77655321 334456677889999999988876 46678999987 4677888888887654
No 112
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=1.2e-28 Score=246.48 Aligned_cols=304 Identities=11% Similarity=0.101 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
.+|+.+++++.+.+.. .|.+ .....++++.++++++ .+ ++++|++|+|+++++..++.+++ ++||+
T Consensus 33 ~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~~----~~-~~~~v~~~~gg~~al~~~~~~~~-~~gd~ 100 (393)
T 3kgw_A 33 NLAPRVLAAGSLRMIG------HMQKEMLQIMEEIKQGIQYVFQ----TR-NPLTLVVSGSGHCAMETALFNLL-EPGDS 100 (393)
T ss_dssp CCCHHHHHHTTCCCCC------TTSHHHHHHHHHHHHHHHHHHT----CC-CSEEEEESCCTTTHHHHHHHHHC-CTTCE
T ss_pred CCCHHHHHHhcccccC------cccHHHHHHHHHHHHHHHHHhC----CC-CCcEEEEeCCcHHHHHHHHHhcC-CCCCE
Confidence 3478887776543221 1211 1223456666666654 32 23369999999999999999997 99999
Q ss_pred EEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHH
Q 041151 158 VVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218 (463)
Q Consensus 158 Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~ 218 (463)
|+++ .|.++ ....+.+|+ +.|++.+++. ++++|++++||||||.+++ +++|.
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~ 171 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTL-QEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFG 171 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHH
T ss_pred EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHH
Confidence 9997 34444 234457899 9999999875 7999999999999999998 77888
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
++|++||++||+||+|+.... . ..+ ...+..+++.|+||+++|++| +||+++ ++++++.
T Consensus 172 ~l~~~~~~~li~De~~~~g~~----~-~~~-----------~~~~~d~~~~s~sK~~~~~~g--~g~~~~---~~~~~~~ 230 (393)
T 3kgw_A 172 ELCHRYQCLLLVDSVASLGGV----P-IYM-----------DQQGIDIMYSSSQKVLNAPPG--ISLISF---NDKAKYK 230 (393)
T ss_dssp HHHHHTTCEEEEECTTTTTTS----C-CCT-----------TTTTCCEEEEESSSTTCCCSS--CEEEEE---CHHHHHH
T ss_pred HHHHHcCCEEEEECCccccCc----c-cch-----------hhcCCCEEEecCcccccCCCc--eeEEEE---CHHHHHH
Confidence 899999999999999874321 1 111 122245888999998855555 899994 8889888
Q ss_pred HHhhhh------------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHH
Q 041151 299 IYKIAS------------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMT 353 (463)
Q Consensus 299 l~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 353 (463)
+..... ...+.+...+.++.++++ ....+ .++++++++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~ 300 (393)
T 3kgw_A 231 VYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLA----------LIAEQGLENCWRRHREATAHLH 300 (393)
T ss_dssp HHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHH
Confidence 875431 023446666666655542 12222 5678889999999999
Q ss_pred HHhhcCCCcccccCCc----eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 354 DGFNSCRNVVCNFTEG----AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 354 ~~L~~~pg~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+.|+++ |+.+..+.+ ++++|+ .+|.+. +..++...+++++||.+.+|..+. ..+++||++
T Consensus 301 ~~L~~~-g~~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRi~~ 364 (393)
T 3kgw_A 301 KHLQEM-GLKFFVKDPEIRLPTITTV--TVPAGY----------NWRDIVSYVLDHFSIEISGGLGPT---EERVLRIGL 364 (393)
T ss_dssp HHHHHT-TCCBSSSSGGGBCSSEEEE--ECCTTB----------CHHHHHHHHHHHHCEECBCCCGGG---TTTEEEEEC
T ss_pred HHHHHc-CCeeccCChhhcCCeEEEE--eCCCCC----------CHHHHHHHHHHhCCEEEeCCcccC---CCCEEEEEe
Confidence 999998 888764433 455563 444321 245566565565699999988543 234899998
Q ss_pred -c--CCcCcHHHHHHHHHHHHHHHH
Q 041151 430 -L--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 430 -~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+ .+++++++++++|+++++++.
T Consensus 365 ~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 365 LGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCHHHHHHHHHHHHHHHHhhh
Confidence 6 488999999999999987653
No 113
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.5e-28 Score=247.25 Aligned_cols=309 Identities=10% Similarity=0.083 Sum_probs=214.1
Q ss_pred cHHHHHHHHHHhhhcCCC-CCccC----CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH---hcC
Q 041151 82 PADAIARAKHYLSLTSGG-LGAYS----DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV---IRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y~----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~ 153 (463)
|+.+++++.+.+...... ...|+ ...+..++|++++++++ +++++|++|+|+++++..++.++ + +
T Consensus 39 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~al~~~~~~l~~~~-~ 111 (406)
T 3cai_A 39 PDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVN------ADPGGVVLGADRAVLLSLLAEASSSRA-G 111 (406)
T ss_dssp CHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESCHHHHHHHHHHHTGGGG-B
T ss_pred CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCChHHHHHHHHHHHhhcc-C
Confidence 889999998887752111 11232 23456788899998885 56789999999999999999987 6 8
Q ss_pred CCCEEEEc-----------------cCcee---c-C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 154 EGDGVVLL-----------------FHTTW---K-R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 154 ~gd~Vlvp-----------------~g~~~---~-~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
+||+|+++ .|.++ + . .++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 112 ~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~- 183 (406)
T 3cai_A 112 LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPT-WQWESLISK------STRLVAVNSASGTLGGVTD- 183 (406)
T ss_dssp TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCG-GGHHHHCCT------TEEEEEEESBCTTTCBBCC-
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCH-HHHHHHhCC------CceEEEEeCCcCCccccCC-
Confidence 99999996 15555 2 2 4567899 999999876 7999999999999999998
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE-EEEecC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG-YFEMTN 290 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G-~~~~~~ 290 (463)
+++|.++|+++|++||+|++|+.... ..++..+ + ..+++.|+||.+ | ++ +| |++
T Consensus 184 --l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~--------~---~d~~~~s~~K~~-g-~~--~G~~~~--- 238 (406)
T 3cai_A 184 --LRAMTKLVHDVGALVVVDHSAAAPYR-----LLDIRET--------D---ADVVTVNAHAWG-G-PP--IGAMVF--- 238 (406)
T ss_dssp --CHHHHHHHHHTTCEEEEECTTTTTTC-----CCCHHHH--------C---CSEEEEEGGGGT-S-CS--CEEEEE---
T ss_pred --HHHHHHHHHHcCCEEEEEcccccCCC-----CCCchhc--------C---CCEEEeehhhhc-C-CC--cCeEEE---
Confidence 67888889999999999999984211 1233222 2 348899999977 5 44 89 998
Q ss_pred CChhHHHHHHhhhh---------h-cccCChHHHHHHHHhcCCCCC-C----CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKIAS---------I-ALSPNVPAQIFMGLMVNPLKP-G----DISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 291 ~~~~~~~~l~~~~~---------~-~~~~~~~~q~~~~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
.++++++.+..... . ..+.+...+.++.++++.... + ......+.++.++++++++++++++.+.
T Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (406)
T 3cai_A 239 RDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVS 318 (406)
T ss_dssp SCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 58877776654421 1 233455555454444420000 0 0000011113567888899999999999
Q ss_pred hhcCCCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC------CCCCCCCCcEEE
Q 041151 356 FNSCRNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS------GFGQKEGIFHLR 426 (463)
Q Consensus 356 L~~~pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~------~f~~~~~~~~lR 426 (463)
|+++||+.+..+. ++ ++++.+ +.. +..++ .+.|.++||.+.+|. .|+...+.+++|
T Consensus 319 L~~~~~~~~~~~~~~~~~-~~~~~~--~~~-----------~~~~~-~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iR 383 (406)
T 3cai_A 319 LRSLPLVMLIGRPEAQIP-VVSFAV--HKV-----------PADRV-VQRLADNGILAIANTGSRVLDVLGVNDVGGAVT 383 (406)
T ss_dssp HHTCTTEEECCCCSSBCS-EEEEEE--TTB-----------CHHHH-HHHHHHTTEECEECCSCHHHHHHTTTTTTCCEE
T ss_pred HhcCCCeEEcCCccccCC-EEEEEE--CCc-----------CHHHH-HHHHHHCCcEEecCChHHHHHHcCCCCCCCeEE
Confidence 9998888877664 44 455433 311 23444 445667899999987 444432346899
Q ss_pred EEec--CCcCcHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~ 445 (463)
|+++ .+++++++++++|++
T Consensus 384 is~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 384 VGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EECCTTCCHHHHHHHHHHHHT
T ss_pred EEeecCCCHHHHHHHHHHHHH
Confidence 9999 578999999999875
No 114
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.96 E-value=9.6e-29 Score=244.48 Aligned_cols=285 Identities=12% Similarity=0.070 Sum_probs=199.6
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC--EEEEc----------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD--GVVLL---------------- 161 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd--~Vlvp---------------- 161 (463)
...|++..+..+|+++++++++ . +..|++ +|+++++..++.+++ ++|| .|+++
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~------~-~~~i~~-~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~ 110 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLG------M-DDAVFF-PSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKEL 110 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHT------C-SEEEEE-SCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHH
T ss_pred cccccCChHHHHHHHHHHHHhC------C-CcEEEe-cCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhc
Confidence 3568776788999999999985 2 234444 666889999999997 7888 77775
Q ss_pred cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 162 FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 162 ~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.|+++ +...+.+|+ +.|+++ . ++++|++++||||| |.+++.+++++|+++|++||++||+|++|...
T Consensus 111 ~g~~~~~v~~~~~~~d~-~~l~~~--~------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~ 181 (357)
T 3lws_A 111 HPIETILVGAADRLMTL-DEIKAL--P------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFE 181 (357)
T ss_dssp SSCEEEECSCTTSCCCH-HHHHTC--C------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred cCcEEEEecCCCCCcCH-HHHhcC--c------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhh
Confidence 23444 445567999 999886 2 58999999999998 99999999999999999999999999998721
Q ss_pred ccC-CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc--CChHH
Q 041151 238 IYQ-DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS--PNVPA 313 (463)
Q Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~~~~~ 313 (463)
... .+ .+...+... .+ +++.|+||++++ ++ .||++ +++++++.+.+... ...+ .....
T Consensus 182 ~~~~~~---~~~~~~~~~-------~d--~~~~s~sK~~~~-~~--gg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 3lws_A 182 MLPYYE---KTAAEIAGL-------FD--SIYISFYKGLGG-IA--GAILA---GPAAFCQTARIWKRRYGGDLISLYPY 243 (357)
T ss_dssp HHHHHT---CCHHHHHTT-------SS--EEEEESSSTTCC-SS--CEEEE---ECHHHHHHHHHHHHHTTCCCSCCHHH
T ss_pred hhhhcC---CChHHHHhc-------CC--EEEEeccccCCC-Cc--eEEEE---cCHHHHHHHHHHHHHhcCCcccchHH
Confidence 110 11 123333211 11 347899999833 33 39988 58999999877654 2222 22333
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 314 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
+.++...+ +.+ . +..+++.++++.+.+.|+++||+.+ ..+.+++|+|++++.+..
T Consensus 244 ~~~~~~~l----------~~~---~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------- 299 (357)
T 3lws_A 244 IVSADYYY----------ELR---K-DRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---------- 299 (357)
T ss_dssp HHHHHHHH----------HHH---T-TCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH----------
T ss_pred HHHHHHHH----------HHH---H-HHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH----------
Confidence 33333332 121 1 2233467788899999999989988 456777888977753321
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-----CCcCcHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-----PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-----~~~e~i~~~~~~l~~~l 447 (463)
.+.+.+.+.|.++||.++||..|. ++..++|++++ .+.+++++++++|++++
T Consensus 300 -~~~~~~~~~l~~~Gi~v~~g~~~~--~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 300 -DISPKLEQVQEETGLGFVGYLVDK--DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp -HHHHHHHHHHHHHCEESCSCCEEC--SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhcCeEEecccccC--CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 023344567788999999997665 36668999987 46678888888887654
No 115
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.1e-27 Score=239.37 Aligned_cols=308 Identities=10% Similarity=0.024 Sum_probs=210.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE------- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------- 154 (463)
++.+.+++.+.+... ...|....+..++++++++++.+.+| +++++|++|+|+++++..++.++. .+
T Consensus 43 ~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~-~~~~~~~~~ 116 (397)
T 3f9t_A 43 LPITRKIVDIFLETN---LGDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIK-NIWREKRRK 116 (397)
T ss_dssp CTHHHHHHHHHTTCC---TTSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred cHHHHHHHHHHHhhc---CCCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHH-HHHHhhhhh
Confidence 677888888877652 12222112456777777777766666 467899999999999999999997 65
Q ss_pred ------CCEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 155 ------GDGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 155 ------gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
||+|+++ .|.++ ....+.+|+ +.|++++++. ++++|++++|+||||.+.+
T Consensus 117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~- 189 (397)
T 3f9t_A 117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDE-KFVKDAVEDY-----DVDGIIGIAGTTELGTIDN- 189 (397)
T ss_dssp TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCH-HHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC-
T ss_pred cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCH-HHHHHHHhhc-----CCeEEEEECCCCCCCCCCC-
Confidence 9999997 56555 344677899 9999999873 5899999999999999987
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH--HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL--MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+++|.++|++||++||+||+|..+.++......++..+. .++ .. +..+++.|+||++ + +|.|+||+++
T Consensus 190 --l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~s~~K~~-~-~~~~~g~~~~- 259 (397)
T 3f9t_A 190 --IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDF----SL-GVDSITIDPHKMG-H-CPIPSGGILF- 259 (397)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSG----GG-TCSEEECCTTTTT-C-CCSSCEEEEE-
T ss_pred --HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccc----cc-cCCeEEEcccccc-C-CCCCceEEEE-
Confidence 777888999999999999999876441111000000000 000 11 2357889999976 3 6789999987
Q ss_pred CCChhHHHHHHhhhhh-c--------cc---CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 290 NIPPKTVDEIYKIASI-A--------LS---PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~~-~--------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
.++.+++.+...... . .+ .+...+.++...+ .....++..++++++++++.+.|+
T Consensus 260 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------------~~~~~~~~~~~~~~~~~~l~~~L~ 326 (397)
T 3f9t_A 260 -KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYL------------GREGQRKIVNECMENTLYLYKKLK 326 (397)
T ss_dssp -SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555332221 0 11 1333444444432 123345677788899999999999
Q ss_pred cCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 358 SCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 358 ~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
++ |+.+..+..+.++|+.+. . ..++ .+.|.++||.+.++.. .+++||+++ .++++
T Consensus 327 ~~-g~~~~~~~~~~~~~~~~~--~-------------~~~~-~~~l~~~gi~v~~~~~------~~~~Ri~~~~~~~~e~ 383 (397)
T 3f9t_A 327 EN-NFKPVIEPILNIVAIEDE--D-------------YKEV-CKKLRDRGIYVSVCNC------VKALRIVVMPHIKREH 383 (397)
T ss_dssp HT-TCCBSSCCSSSEEEEECT--T-------------HHHH-HHHHHHTTCBCEECSS------SSEEEEECCTTCCHHH
T ss_pred HC-CCEEEcCCCccEEEEEeC--C-------------HHHH-HHHHHhCCeEEeccCC------CCEEEEEEcCCCCHHH
Confidence 98 887655444555553332 1 2343 4556677999999763 248999999 68899
Q ss_pred HHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFND 448 (463)
Q Consensus 436 i~~~~~~l~~~l~ 448 (463)
+++++++|+++++
T Consensus 384 i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 384 IDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998764
No 116
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.96 E-value=2e-28 Score=246.33 Aligned_cols=304 Identities=14% Similarity=0.122 Sum_probs=208.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
++.+.+++.+++.........|+ .+.++++++++.+.+ ..++|++|+|+++++..++.++. . +
T Consensus 57 ~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~la~~~----~~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~~ 126 (406)
T 4adb_A 57 HPELREALNEQASKFWHTGNGYT-----NEPVLRLAKKLIDAT----FADRVFFCNSGAEANEAALKLAR-KFAHDRYGS 126 (406)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSC-----CHHHHHHHHHHHHHS----SCSEEEEESSHHHHHHHHHHHHH-HHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcccccCCcC-----CHHHHHHHHHHHhhC----CCCeEEEeCcHHHHHHHHHHHHH-HHHHhcCCC
Confidence 78899999888876211112232 233444555554443 34699999999999999999886 4 6
Q ss_pred C-CEEEEc---cCcee-----------------c-CCCcc----cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 155 G-DGVVLL---FHTTW-----------------K-RQQIG----VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 155 g-d~Vlvp---~g~~~-----------------~-~~~~~----~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
| |.|+++ +.... + ..+.. .|+ +.|++++++ ++++|+++ |+||||.+
T Consensus 127 g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~-p~np~g~~ 198 (406)
T 4adb_A 127 HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDI-NSASALIDD------STCAVIVE-PIQGEGGV 198 (406)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCH-HHHHTTCST------TEEEEEEC-SEETTTTS
T ss_pred CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcH-HHHHHHhcC------CeEEEEEe-CCcCCCCC
Confidence 6 888886 11110 0 01222 478 999998875 89999888 99999999
Q ss_pred C--CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 209 L--SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 209 ~--s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+ +.+++++|+++|++||++||+||+|.++.+. +.. ..+... +. .. +++ ||||++ + +|+|+||+
T Consensus 199 ~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~-~~~~~~--~~----~~--d~~---t~sK~~-~-~G~r~G~~ 263 (406)
T 4adb_A 199 VPASNAFLQGLRELCNRHNALLIFDEVQTGVGRT-GEL-YAYMHY--GV----TP--DLL---TTAKAL-G-GGFPVGAL 263 (406)
T ss_dssp EECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSS-SHHHHH--TC----CC--SEE---EECGGG-G-TTSCCEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc-chh-HHHHhc--CC----CC--CEE---Eechhh-c-CCCCeEEE
Confidence 8 9999999999999999999999999976552 222 122221 11 22 233 679999 7 89999999
Q ss_pred EecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC
Q 041151 287 EMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RN 361 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg 361 (463)
+ +++++++.+..... .+++.+.+.|.++.++++ ... .++.+++++++++++.+.|+++ +.
T Consensus 264 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 328 (406)
T 4adb_A 264 L---ATEECARVMTVGTHGTTYGGNPLASAVAGKVLE-----------LIN-TPEMLNGVKQRHDWFVERLNTINHRYGL 328 (406)
T ss_dssp E---ECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHH-----------HHS-SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred E---EcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHH-----------HHH-hcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8 58888888876653 567889999999888763 111 1356677888888888888764 11
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+.. .+..+.++|+.+..+.. .+..+++ ..|.++||.+.|+. .+++|++++ .++++++++
T Consensus 329 ~~~-~~~~g~~~~~~~~~~~~----------~~~~~~~-~~l~~~gi~v~~~~-------~~~iRi~~~~~~~~e~i~~~ 389 (406)
T 4adb_A 329 FSE-VRGLGLLIGCVLNADYA----------GQAKQIS-QEAAKAGVMVLIAG-------GNVVRFAPALNVSEEEVTTG 389 (406)
T ss_dssp EEE-EEEETTEEEEEECTTTT----------TCHHHHH-HHHHHTTEECEESS-------TTEEEECCCTTCCHHHHHHH
T ss_pred ceE-EEEEEEEEEEEEeCCcH----------HHHHHHH-HHHHHCCcEEeecC-------CCeEEEECCCCCCHHHHHHH
Confidence 111 12235566655432110 1234444 44566799999853 348999655 889999999
Q ss_pred HHHHHHHHHHHHH
Q 041151 440 MESFKKFNDEFME 452 (463)
Q Consensus 440 ~~~l~~~l~~~~~ 452 (463)
+++|+++++++.+
T Consensus 390 ~~~l~~~l~~~~~ 402 (406)
T 4adb_A 390 LDRFAAACEHFVS 402 (406)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 117
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.96 E-value=2.1e-27 Score=238.91 Aligned_cols=331 Identities=14% Similarity=0.051 Sum_probs=227.2
Q ss_pred HHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCC
Q 041151 28 LRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSR 107 (463)
Q Consensus 28 ~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~ 107 (463)
..+++.....+++|+|+.|.+.. |+.+++++.+.+.+. ...+|+...
T Consensus 13 ~~~~~~~~~~~~~i~~~~~~~~~-------------------------------~~~v~~a~~~~~~~~--~~~~y~~~~ 59 (407)
T 2dkj_A 13 ELIALEEKRQREGLELIASENFV-------------------------------SKQVREAVGSVLTNK--YAEGYPGAR 59 (407)
T ss_dssp HHHHHHHHHHHTSEECCTTCCCC-------------------------------CHHHHHHHTSGGGGC--CCCEETTEE
T ss_pred HHHHHHHHHhhcceeeccCCCCC-------------------------------CHHHHHHHHhhhhcC--cccCCCccc
Confidence 33333443445789999997664 888999998877641 234565432
Q ss_pred ---CCHH--HHHHHH-HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC-------------c-
Q 041151 108 ---GIPG--VRKEVA-EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH-------------T- 164 (463)
Q Consensus 108 ---g~~~--lr~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g-------------~- 164 (463)
|.+. ++++++ +++.+.+| .++++|++++|+ +++..++.+++ ++||+|+++ ++ .
T Consensus 60 ~~~g~~~~~~~e~~ar~~la~~~g--~~~~~i~~~sGt-~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~ 135 (407)
T 2dkj_A 60 YYGGCEVIDRVESLAIERAKALFG--AAWANVQPHSGS-QANMAVYMALM-EPGDTLMGMDLAAGGHLTHGSRVNFSGKL 135 (407)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHH-HHHHHHHHHHC-CTTCEEEEECGGGTCCGGGTCTTSHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHHHHhC--CCcceEEecchH-HHHHHHHHHhc-CCCCEEEEecccccCccchHHHHHhcCce
Confidence 5443 444322 34444444 345567777775 59999999997 899999997 21 1
Q ss_pred -ee---c-C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc-c
Q 041151 165 -TW---K-R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-N 237 (463)
Q Consensus 165 -~~---~-~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~ 237 (463)
.+ . . +.+.+|+ +.|++.+++. ++++|++++|+|| ...+ +++|.++|+++|+++|+||+|+. +
T Consensus 136 ~~~~~~~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~ 204 (407)
T 2dkj_A 136 YKVVSYGVRPDTELIDL-EEVRRLALEH-----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGL 204 (407)
T ss_dssp SEEEEECCCTTTSSCCH-HHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHH
T ss_pred EEEEecCCCcccCccCH-HHHHHHHhhc-----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccc
Confidence 11 1 2 3678999 9999999854 7899999999998 4555 78889999999999999999987 4
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC-hhHHHHHHhhhh-hcccCChHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-PKTVDEIYKIAS-IALSPNVPAQI 315 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~q~ 315 (463)
.+. +.....+ .. .++++.|+||++ +|+|+||+++ + +++++.+..... ...+.....+.
T Consensus 205 ~~~-~~~~~~~-----------~~--~di~~~s~sK~l---~g~~~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ 264 (407)
T 2dkj_A 205 VAA-GLHPNPL-----------PY--AHVVTSTTHKTL---RGPRGGLILS---NDPELGKRIDKLIFPGIQGGPLEHVI 264 (407)
T ss_dssp HHT-TCSCCCT-----------TT--CSEEEEESSGGG---CCCSCEEEEE---SCHHHHHHHHHHHTTTTCSSCCHHHH
T ss_pred ccc-CccCCcc-----------cc--ccEEEEeccccC---CCCCceEEEE---CCHHHHHHHHhhhcccccCCCcHHHH
Confidence 432 2211111 11 358899999976 5889999995 6 789988877654 23333334333
Q ss_pred -HHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCC
Q 041151 316 -FMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 316 -~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
++.++++ .. ..+.++++++++++++++.+.|++. |+.+.. +.+++++|+.++ .. +
T Consensus 265 ~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~--------~- 322 (407)
T 2dkj_A 265 AGKAVAFF----------EALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLR--PK--------G- 322 (407)
T ss_dssp HHHHHHHH----------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG--GG--------T-
T ss_pred HHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECc--cc--------C-
Confidence 4444442 11 2345678888999999999999998 888764 356777785543 21 0
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCC---CCCCCcEEEEEec------CCcCcHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFG---QKEGIFHLRTTIL------PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~---~~~~~~~lRis~~------~~~e~i~~~~~~l~~~l~~ 449 (463)
.+... +...|.++||.+.+|..|. .....+++|++++ .+++++++++++|++++++
T Consensus 323 ~~~~~-~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 323 LTGKE-AEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CCHHH-HHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 02334 4455788999999988651 1112458999996 6889999999999999887
No 118
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=8.5e-29 Score=248.12 Aligned_cols=296 Identities=14% Similarity=0.133 Sum_probs=209.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE------- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------- 154 (463)
++.+.+++.+.+.........|+ ..-..++++.+++++ | +++|++|+|+++++..++..+. .+
T Consensus 54 ~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~~gt~a~~~al~~~~-~~~~~~~~~ 123 (392)
T 3ruy_A 54 HPKIINALIDQANRVTLTSRAFH-SDQLGPWYEKVAKLT----N----KEMVLPMNTGAEAVETAIKTAR-RWAYDVKKV 123 (392)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSE-ETTHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHH-HHHHHTSCC
T ss_pred CHHHHHHHHHHHHhccccccccC-CHHHHHHHHHHHHhc----C----CCEEEEeCcHHHHHHHHHHHHH-HhhhhccCC
Confidence 78899999888876311111122 223456666666654 3 6899999999999999999876 44
Q ss_pred ---CCEEEEc---c-Ccee-----c---------------CCCcc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 155 ---GDGVVLL---F-HTTW-----K---------------RQQIG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 155 ---gd~Vlvp---~-g~~~-----~---------------~~~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
++.|+++ + |... . ..... .|+ +.|++++++ ++++|++++|+||||
T Consensus 124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG 196 (392)
T 3ruy_A 124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDL-EALKAAITP------NTAAFILEPIQGEAG 196 (392)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCH-HHHHHHCCT------TEEEEEECSSBSTTT
T ss_pred CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccH-HHHHHHhcc------CeEEEEEeCccCCCC
Confidence 6788886 2 2111 0 00111 178 999999885 899999999999999
Q ss_pred cCCCHHH-HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeE
Q 041151 207 QCLSEAN-LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGG 284 (463)
Q Consensus 207 ~~~s~~~-l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G 284 (463)
.+++.++ +++|.++|++||++||+||+|..+.+. +.. ..... .+. .. .+ .||||++ + +| +|+|
T Consensus 197 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-g~~-~~~~~--~~~----~~--d~---~~~SK~l-~-gG~~~~G 261 (392)
T 3ruy_A 197 INIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT-GKV-FACDW--DNV----TP--DM---YILGKAL-G-GGVFPIS 261 (392)
T ss_dssp SBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTT-SSS-SGGGG--GTC----CC--SE---EEECGGG-G-TTTSCCE
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcc-ccc-hhhhc--cCC----CC--CE---EEEchhh-h-CChhhhE
Confidence 9996555 999999999999999999999876552 221 11111 011 11 22 3789998 3 36 9999
Q ss_pred EEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC
Q 041151 285 YFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RN 361 (463)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg 361 (463)
|++ +++++++.+..... .+++.+.+.+.++.++++ .... ++.+++++++++++.+.|+++ +.
T Consensus 262 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (392)
T 3ruy_A 262 CAA---ANRDILGVFEPGSHGSTFGGNPLACAVSIAALE-----------VLEE-EKLTERSLQLGEKLVGQLKEIDNPM 326 (392)
T ss_dssp EEE---ECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred EEE---ECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHH-----------HHHh-hhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999 48888877766553 567889999999888873 2222 567888999999999999987 34
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+....+.|+++.|. ++ . +..++.. .|.++||.+.||. .+++|++++ .++++++++
T Consensus 327 ~~~~~~~g~~~~~~-~~--~------------~~~~l~~-~l~~~gi~v~~~~-------~~~iRi~~~~~~~~~~i~~~ 383 (392)
T 3ruy_A 327 ITEVRGKGLFIGIE-LN--E------------PARPYCE-QLKAAGLLCKETH-------ENVIRIAPPLVISEEDLEWA 383 (392)
T ss_dssp EEEEEEETTEEEEE-ES--S------------CSHHHHH-HHHTTTEECCCBT-------TTEEEECCCTTCCHHHHHHH
T ss_pred ceEEEeeeeEEEEE-Ec--c------------hHHHHHH-HHHHCCcEEecCC-------CCEEEEECCCCCCHHHHHHH
Confidence 55556667666652 33 1 1345444 4568899999864 348999966 788999999
Q ss_pred HHHHHHHH
Q 041151 440 MESFKKFN 447 (463)
Q Consensus 440 ~~~l~~~l 447 (463)
+++|++++
T Consensus 384 ~~~l~~~l 391 (392)
T 3ruy_A 384 FQKIKAVL 391 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998876
No 119
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=3e-28 Score=239.78 Aligned_cols=298 Identities=11% Similarity=0.021 Sum_probs=212.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
|+.+++++.+.+.. +.|+ ...+..++|++++++++ .+.++++|++|+|+++++..++.++. + |+|++
T Consensus 12 ~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~t~g~t~a~~~~~~~~~-~--d~vl~ 79 (353)
T 2yrr_A 12 PERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFD----PGEGALVAALAGSGSLGMEAGLANLD-R--GPVLV 79 (353)
T ss_dssp CHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHC----CCTTCEEEEESSCHHHHHHHHHHTCS-C--CCEEE
T ss_pred CHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhC----CCCCCceEEEcCCcHHHHHHHHHHhc-C--CcEEE
Confidence 78888877665443 2232 22345778888887774 33457899999999999999999986 5 77888
Q ss_pred c---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~ 150 (353)
T 2yrr_A 80 LVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDP-EAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALA 150 (353)
T ss_dssp EECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCH-HHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHH
Confidence 5 34444 234566899 9999999862 5899999999999999998 66788889
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++|++||+|++|+... . ..++..+ + ..+++.|++|++++++| +||+++ ++++++.+..
T Consensus 151 ~~~~~~li~D~a~~~~~----~-~~~~~~~--------~---~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~l~~ 209 (353)
T 2yrr_A 151 KEAGALFFLDAVTTLGM----L-PFSMRAM--------G---VDYAFTGSQKCLSAPPG--LAPIAA---SLEARKAFTG 209 (353)
T ss_dssp HHHTCEEEEECTTTTTT----S-CCCHHHH--------T---CSEEECCTTSTTCCCSS--CEEEEE---CHHHHHHCCC
T ss_pred HHcCCeEEEEcCccccc----c-ccccccc--------C---ceEEEecCcccccCCCc--eEEEEE---CHHHHHHhcc
Confidence 99999999999996421 1 1233332 2 13788999997756667 699995 8888776641
Q ss_pred -------------h--hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 302 -------------I--AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 302 -------------~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
. .. ..++.+...+.++.++++ ....+ .++++++++++++++.+.|+++ |+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 278 (353)
T 2yrr_A 210 KRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALD----------LVLEEGVAARERRAREVYAWVLEELKAR-GFRP 278 (353)
T ss_dssp CSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred CCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 0 11 234556666666666652 12233 5567889999999999999988 8887
Q ss_pred ccCC--ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHH-HH
Q 041151 365 NFTE--GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMP-AI 439 (463)
Q Consensus 365 ~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~-~~ 439 (463)
..+. +++++|+.+ |.+. +..++. +.|.++||.+.+|..|.. .+++|+++. .++++++ ++
T Consensus 279 ~~~~~~~~~~~~~~~--~~~~----------~~~~~~-~~l~~~gi~v~~g~~~~~---~~~iRi~~~~~~~~~~~~~~~ 342 (353)
T 2yrr_A 279 YPKASPLPTVLVVRP--PEGV----------DADRLV-RALYAEGVAVAGGIGPTR---GQVLRLGLMGEGARREAYQAF 342 (353)
T ss_dssp SCSSSBCTTEEEEEC--CTTC----------CHHHHH-HHHHHTTEECEECCGGGT---TTCEEEECSGGGSCHHHHHHH
T ss_pred ccCccCCCeEEEEEC--CCCC----------CHHHHH-HHHHHCCEEEeCCccccC---CCeEEEecCccCCHHHHHHHH
Confidence 7654 566767544 3221 234444 456667999999987653 247999994 7888999 99
Q ss_pred HHHHHHHHH
Q 041151 440 MESFKKFND 448 (463)
Q Consensus 440 ~~~l~~~l~ 448 (463)
+++|+++++
T Consensus 343 ~~~l~~~l~ 351 (353)
T 2yrr_A 343 LKALDRALA 351 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
No 120
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.96 E-value=8.1e-28 Score=244.16 Aligned_cols=326 Identities=11% Similarity=0.031 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-------CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-------GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~~ 154 (463)
|+.+++++.+++... ..|.+..+..++++++++++.+.++ .+.++|++|+|+++++..+++++.. .+
T Consensus 47 ~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~ 120 (430)
T 3i4j_A 47 RAEVGERMAAQAARL----PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATESAVKLARQYHVERGEPG 120 (430)
T ss_dssp CHHHHHHHHHHHHHC----CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHhc----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 788999999888762 2344445666788888888877665 4567999999999999999998851 23
Q ss_pred CCEEEEc----cCcee---------------------------cC-CC---cccChHHHHHHHHHHHHhcCCceeEEEEE
Q 041151 155 GDGVVLL----FHTTW---------------------------KR-QQ---IGVLIINDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 155 gd~Vlvp----~g~~~---------------------------~~-~~---~~~d~~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
++.|+++ +|... +. +. ...|+ +.|++.++.... .++++|+++
T Consensus 121 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~le~~l~~~~~--~~~~~vi~~ 197 (430)
T 3i4j_A 121 RFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDA-EGLRALLEREGP--ETVAAFMAE 197 (430)
T ss_dssp CCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHH-THHHHHHHHHCG--GGEEEEEEC
T ss_pred CcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHH-HHHHHHHHhcCC--CCEEEEEEc
Confidence 6788875 11110 00 00 12366 889998875210 145555544
Q ss_pred CCCC-CCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 200 NPGN-PTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 200 ~p~N-PtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
.+|| ++|. +++.+++++|.++|++||++||+||+|.++... +. ...... .++. .. .+.||||++ +
T Consensus 198 p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~-g~-~~~~~~-~~~~----~~-----di~t~sK~l-~ 264 (430)
T 3i4j_A 198 PVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC-GS-PLALSR-WSGV----TP-----DIAVLGKGL-A 264 (430)
T ss_dssp SSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGG-TTTC----CC-----SEEEECGGG-T
T ss_pred CcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc-cc-hhhhhh-hcCC----CC-----cEEEEcccc-c
Confidence 4466 8886 678888999999999999999999999987552 22 112111 0011 11 134799999 6
Q ss_pred CCC-ceeEEEEecCCChhHHHHHHhh-----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 278 ECG-QRGGYFEMTNIPPKTVDEIYKI-----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 278 ~~G-~R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
+| +|+||++ +++++++.+.+. ...+++.+++.|.++.++|+ .... +...++++++.+.
T Consensus 265 -~G~~r~G~~~---~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 265 -AGYAPLAGLL---AAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLD-----------IVER-EDLTGAAKERGAQ 328 (430)
T ss_dssp -TTSSCCEEEE---ECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHH
T ss_pred -CCccccEEEE---ECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHH-----------HHHc-ccHHHHHHHHHHH
Confidence 59 9999999 599999999873 33567889999999988874 1111 2233344444444
Q ss_pred HH----HHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEE
Q 041151 352 MT----DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRT 427 (463)
Q Consensus 352 l~----~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRi 427 (463)
+. +.+.++|++....+.|.|+ ++.+. .... ...+.......++ ...|.++||.++|+..+....+.+++||
T Consensus 329 ~~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~-~~~~~~~~~~~~~-~~~l~~~Gv~v~~~~~~~~~~~~~~iRi 403 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVRGTGLLL-GVVLG--DLAT-GQAFETPGIASRI-GAAALKRGLITYPGSGAEPNGRGDHLLL 403 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEE-EEEEC---------------CHHHH-HHHHHHTTEECC-----------CEEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEE-EEEec--cccc-cCCCccHHHHHHH-HHHHHhCCCEEEecccccCCCCCCEEEE
Confidence 44 4444456676666666644 43332 1100 0000000011334 4556688999999853333234568999
Q ss_pred Eec--CCcCcHHHHHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++ .+++++++++++|+++++++
T Consensus 404 ~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 404 GPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 998 78899999999999998764
No 121
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.96 E-value=4.1e-28 Score=239.41 Aligned_cols=306 Identities=11% Similarity=0.007 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++.+++++.+.+.. ....|++ .++++++++++.+.+| .+++|++|+|+++++..++.++. ++||.|+++
T Consensus 21 ~~~v~~a~~~~~~~---~~~~~~~----~~~~~~l~~~la~~~g---~~~~v~~~~~gt~a~~~al~~~~-~~gd~vi~~ 89 (356)
T 1v72_A 21 SPEVAQALVKHSSG---QAGPYGT----DELTAQVKRKFCEIFE---RDVEVFLVPTGTAANALCLSAMT-PPWGNIYCH 89 (356)
T ss_dssp CHHHHHHHHHTTSS---CCCSTTC----SHHHHHHHHHHHHHHT---SCCEEEEESCHHHHHHHHHHTSC-CTTEEEEEC
T ss_pred CHHHHHHHHhhccC---ccccccc----chHHHHHHHHHHHHhC---CCCcEEEeCCccHHHHHHHHHhc-CCCCEEEEc
Confidence 78888888776532 1234543 3444555555544445 24479999999999999999987 899999997
Q ss_pred ---------c--------Ccee---cCCCcccChHHHHHH-HHHHHH-hcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 162 ---------F--------HTTW---KRQQIGVLIINDLQQ-SVAQAR-SKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 162 ---------~--------g~~~---~~~~~~~d~~~~l~~-~l~~~~-~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
. |.++ +.+.+.+|+ +.|++ .+++.. ..++++++|++++||| ||.+++.+++++|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~ 167 (356)
T 1v72_A 90 PASHINNDECGAPEFFSNGAKLMTVDGPAAKLDI-VRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGD 167 (356)
T ss_dssp TTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCH-HHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHH
T ss_pred CccchhhhhchHHHHHhCCcEEEEecCCCCeEcH-HHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHH
Confidence 2 6666 334578899 99999 876410 1122589999999987 999999999999999
Q ss_pred HhhhCCeEEEecccccccccC-CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQ-DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
+|++||++||+|++|..+... .+.....+ .+ ..... +++.|+||+. + ...+||++ +++++++.
T Consensus 168 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~--------~~~~d-~~~~s~sK~g-~--~~G~g~~~---~~~~~~~~ 231 (356)
T 1v72_A 168 VCKSSSLGLHMDGSRFANALVSLGCSPAEM-TW--------KAGVD-ALSFGATKNG-V--LAAEAIVL---FNTSLATE 231 (356)
T ss_dssp HHHHTTCEEEEEETTHHHHHHHHTCCTTTT-TG--------GGTCC-EEEECCGGGT-C--SSCEEEEE---SSGGGHHH
T ss_pred HHHHcCCeEEEEchhhHhHhccCCCCHHHh-hh--------hhcCC-EEEEecccCC-C--cCccEEEE---ECHHHHhh
Confidence 999999999999999754210 11111111 00 00112 3456999962 2 22234887 58889888
Q ss_pred HHhhhh-hc-ccC-ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 299 IYKIAS-IA-LSP-NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 299 l~~~~~-~~-~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
+..... .. ... +...+..+...++. ..+ .+..++++++++++.+.|++++|+.+..|.+++++|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~-------~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 299 (356)
T 1v72_A 232 MSYRRKRAGHLSSKMRFLSAQIDAYLTD-----DLW-------LRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFC 299 (356)
T ss_dssp HHHHHHHTTCCCSSTHHHHHHHHHHTST-----THH-------HHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEE
T ss_pred HHHHhhccCchhhhHHHHHHHHHHHHHh-----hhH-------HHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEE
Confidence 876543 11 112 22333333444431 111 1245567888899999999888998877788888886
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+++ .+++.. |.++||.+.||. |+ .+++|+++. .+++++++++++|++++++..
T Consensus 300 ~~~-----------------~~~~~~-l~~~gi~v~~g~-~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 354 (356)
T 1v72_A 300 RLD-----------------SAMIDA-LLKAGFGFYHDR-WG----PNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ 354 (356)
T ss_dssp EEC-----------------HHHHHH-HHHTTCBCBCSS-SS----TTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred EcC-----------------HHHHHH-HHhcCeEEeccc-cC----CCeEEEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 543 133434 567899999987 54 348999987 688999999999998876643
No 122
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.96 E-value=2e-27 Score=243.83 Aligned_cols=365 Identities=16% Similarity=0.154 Sum_probs=244.4
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
-+.|+..++++.+..+...+.++...|.++++++.|++.. +| . +. ..++.+.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~yl------D~----------~-----~~---~~~~~v~~a~~ 62 (467)
T 1ax4_A 7 EPFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYI------DL----------L-----TD---SGTNAMSDHQW 62 (467)
T ss_dssp CSEEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSE------EC----------S-----CS---SSCCCEEHHHH
T ss_pred ChhhhceeecccccchhHHHHHHHhcCcCcccCCCCceee------ec----------c-----cC---cCCHHHHHHHH
Confidence 3467778899999888888888988899999999887632 00 0 00 00245556666
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC----CCCE---EEEc--
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG----EGDG---VVLL-- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~gd~---Vlvp-- 161 (463)
+.+.. ....|++..+..+||++++++++ .++|++|+|+++++..++.++. + +||. |+++
T Consensus 63 ~~~~~---~~~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~ggt~A~~~al~~~~-~~~~~~Gd~~~~viv~~~ 130 (467)
T 1ax4_A 63 AAMIT---GDEAYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKNPVFISNF 130 (467)
T ss_dssp HHHHT---CCCCSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSSCEEEESS
T ss_pred HHHhh---cccccccCccHHHHHHHHHHHcC--------CCcEEEcCCcHHHHHHHHHHHH-HhhccCCCccceEEEecc
Confidence 66544 23468777788999999999984 3799999999999999999997 8 9998 8886
Q ss_pred -----------cCcee---cC-----------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHH
Q 041151 162 -----------FHTTW---KR-----------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLR 215 (463)
Q Consensus 162 -----------~g~~~---~~-----------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~ 215 (463)
.|.++ +. ..+.+|+ +.|++++++.. .+++++|++++||||| |.+++.++++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~ 207 (467)
T 1ax4_A 131 HFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDI-KKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLK 207 (467)
T ss_dssp CCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCH-HHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred ccchhhHHHhccCCceecccccccccccccCCcccccCH-HHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHH
Confidence 23333 10 1346899 99999998631 0158999999999999 8999999999
Q ss_pred HHHHHhhhCCeEEEecccccc--c--------ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 216 EILRFCYQENLVLLGDEVYQQ--N--------IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
+|+++|++||++||+|+++.. . .+ .+ .++..+.+++ ..... +++.|+||++ |++ + .||
T Consensus 208 ~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~----~~~~d-~~~~s~sK~~-g~~-~-Gg~ 275 (467)
T 1ax4_A 208 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY-KN---ATIKEVIFDM----YKYAD-ALTMSAKKDP-LLN-I-GGL 275 (467)
T ss_dssp HHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG-TT---CCHHHHHHHH----GGGCS-EEEEETTSTT-CCS-S-CEE
T ss_pred HHHHHHHHcCCEEEEEchhhhhcchhcccccccc-CC---Cchhhhhhhh----ccccc-eEEEeccccC-CCC-c-ceE
Confidence 999999999999999998653 1 12 11 2333332111 01111 4568999988 665 0 267
Q ss_pred EEecCCC-h-hHHHHHHhhhh-h----cc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 286 FEMTNIP-P-KTVDEIYKIAS-I----AL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 286 ~~~~~~~-~-~~~~~l~~~~~-~----~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
++. + + ++++.+..... . .. ..+...+.++...++ ...+ ++..+...++++++.+.|+
T Consensus 276 ~~~---~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~----------~~~~--~~~~~~~~~~~~~l~~~L~ 340 (467)
T 1ax4_A 276 VAI---RDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLE----------EGTE--EEYLHYRIGQVKYLGDRLR 340 (467)
T ss_dssp EEE---SSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHH----------HTTC--HHHHHHHHHHHHHHHHHHH
T ss_pred EEe---CCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHH----------Hhhh--hhHHHHHHHHHHHHHHHHH
Confidence 763 4 6 78887765532 1 11 222222232222331 0111 0122223466778888888
Q ss_pred cCCCcccccCCceeEEeeecc-----CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCC-CCC--------CCC
Q 041151 358 SCRNVVCNFTEGAMYSFPQIR-----LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGF-GQK--------EGI 422 (463)
Q Consensus 358 ~~pg~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f-~~~--------~~~ 422 (463)
+ +|+.+..|.+++++|+++. ++... .+..+++..++.++||.+.| |..| +.. ...
T Consensus 341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~ 410 (467)
T 1ax4_A 341 E-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQ---------FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM 410 (467)
T ss_dssp H-TTCCBCSSCCSSEEEEESTTTCTTSCGGG---------CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred h-CCCCcccCCCceEEEEehhhhccccccCC---------CCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence 7 4888878889999997732 22110 02345555555889999999 6532 210 123
Q ss_pred cEEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 423 ~~lRis~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+++||+++ .+++++++++++|++++++..
T Consensus 411 ~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 411 EFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp CEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 68999998 688999999999999988753
No 123
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.96 E-value=1.7e-27 Score=237.54 Aligned_cols=301 Identities=11% Similarity=0.029 Sum_probs=209.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC--CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS--RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--GEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~ 157 (463)
++.+++++.+.... .|.+. ....++++++++++....+ +++++|++|+|+++++..++.++.. ++||+
T Consensus 17 ~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~ 88 (385)
T 2bkw_A 17 SGAVQKALDVPSLG------HTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFASNFILSKAPNKN 88 (385)
T ss_dssp CHHHHHTTSCCCCC------TTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCE
T ss_pred hHHHHHHHhccccc------cCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHHHHhccCCCCCe
Confidence 67777665433221 12221 1345677888888764333 4578999999999999999999841 58999
Q ss_pred EEEc---------------cCcee----c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHH
Q 041151 158 VVLL---------------FHTTW----K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI 217 (463)
Q Consensus 158 Vlvp---------------~g~~~----~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l 217 (463)
|+++ .|.++ . +.++.+|+ +.|++++++. ++++|++++|+||||.+++ +++|
T Consensus 89 vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i 159 (385)
T 2bkw_A 89 VLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPL-ELITEKLSQN-----SYGAVTVTHVDTSTAVLSD---LKAI 159 (385)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCH-HHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHH
T ss_pred EEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCH-HHHHHHHhcC-----CCCEEEEEccCCCcCeEcC---HHHH
Confidence 8664 45555 2 45567899 9999999862 6899999999999999998 6688
Q ss_pred HHHhhhC--CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 218 LRFCYQE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 218 ~~~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+++|+++ |++||+|++|+.... + .++ ...+..+++.|+||+++|++| +||+++ ++++
T Consensus 160 ~~~~~~~~~~~~li~D~a~~~~~~----~-~~~-----------~~~~~d~~~~s~~K~~~~~~G--~G~~~~---~~~~ 218 (385)
T 2bkw_A 160 SQAIKQTSPETFFVVDAVCSIGCE----E-FEF-----------DEWGVDFALTASQKAIGAPAG--LSISLC---SSRF 218 (385)
T ss_dssp HHHHHHHCTTSEEEEECTTTTTTS----C-CCT-----------TTTTCSEEEEESSSTTCCCSC--EEEEEE---CHHH
T ss_pred HHHHHhhCCCCEEEEECccccCCc----c-ccc-----------cccCceEEEecCccccccCCc--ceEEEE---cHHH
Confidence 8899999 999999999974321 1 122 112245788999998755677 499985 7777
Q ss_pred HH-HHH----------------------hhhhh----cccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHH
Q 041151 296 VD-EIY----------------------KIASI----ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRR 347 (463)
Q Consensus 296 ~~-~l~----------------------~~~~~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 347 (463)
++ .+. ..... ..+.+...+.++.++++ ....+ .+++++++++
T Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~ 288 (385)
T 2bkw_A 219 MDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALK----------EILEEGLHKRWDLHRE 288 (385)
T ss_dssp HHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHH
T ss_pred HHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHccHHHHHHHHHH
Confidence 66 442 11110 13456666666666652 12222 4567888999
Q ss_pred HHHHHHHHh-hcCCCcccccCC-----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 348 RARMMTDGF-NSCRNVVCNFTE-----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 348 ~~~~l~~~L-~~~pg~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
+++++.+.| +++ |+.+..++ .+.++|+.++ . ..+++ +.|.++||.+.+|..+.. +
T Consensus 289 ~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~-~~l~~~gi~v~~g~~~~~--~ 349 (385)
T 2bkw_A 289 MSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVA--D-------------PPDVI-AFLKSHGVVIAGGIHKDI--G 349 (385)
T ss_dssp HHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECS--C-------------HHHHH-HHHHHTTEECBCCCCTTT--G
T ss_pred HHHHHHHHHHHhc-CceecccCcccccCCceEEEecC--C-------------HHHHH-HHHHHCCeEEeCCCCccc--C
Confidence 999999999 888 88876532 4566775443 1 23444 445678999999887643 3
Q ss_pred CcEEEEE-ec-----CCcCcHHHHHHHHHHHHHH
Q 041151 422 IFHLRTT-IL-----PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 422 ~~~lRis-~~-----~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++||+ ++ .+++++++++++|++++++
T Consensus 350 ~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 350 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 4589999 66 5889999999999988754
No 124
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=3.3e-27 Score=238.00 Aligned_cols=279 Identities=11% Similarity=0.085 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEE-EcCCcHHHHHHHHHHHhcCCCCEEEEc---------------cCcee----cC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIF-LTDGASKGVMQTLNCVIRGEGDGVVLL---------------FHTTW----KR 168 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~-~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------~g~~~----~~ 168 (463)
..++++.+++++ | .++++++ +++|+++++..++.+++ ++||+|+++ .|.++ ..
T Consensus 46 ~~~l~~~la~~~----g--~~~~~~~~~~~s~t~al~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 118 (416)
T 3isl_A 46 MNETMEMLRELF----Q--TKNRWAYPIDGTSRAGIEAVLASVI-EPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE 118 (416)
T ss_dssp HHHHHHHHHHHT----T--CCCSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHh----C--CCCCcEEEecCcHHHHHHHHHHHhc-CCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC
Confidence 345555555555 4 4566565 88899999999999997 999999997 35554 33
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
.++.+|+ +.|++++++. ++++|++++|+||||.+++ +++|.++|++||++||+|++|+.... ...+
T Consensus 119 ~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~ 184 (416)
T 3isl_A 119 WGTVFDP-EDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC-----EVKV 184 (416)
T ss_dssp TTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS-----CCCT
T ss_pred CCCCCCH-HHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC-----Ccch
Confidence 4567899 9999999843 7999999999999999998 77788899999999999999875322 1111
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-------------------------
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA------------------------- 303 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~------------------------- 303 (463)
...+..+++.|+||+++|.+ ++|++++ ++++++.+....
T Consensus 185 -----------~~~~~d~~~~s~~K~l~g~~--g~g~~~~---~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~ 248 (416)
T 3isl_A 185 -----------DEWKIDAAIGGTQKCLSVPS--GMAPITY---NERVADVIAARKKVERGIATQADRAALSGNRPITSNY 248 (416)
T ss_dssp -----------TTTTCSEEECCSSSTTCCCS--SEEEEEE---CHHHHHHHHTC------------------CCCCSCST
T ss_pred -----------hhcCCCEEEecCccccCCCC--CeEEEEE---CHHHHHHhhccccccccccccccchhccCCCCCCccc
Confidence 11224589999999864544 4899984 888888886431
Q ss_pred -----------h---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 041151 304 -----------S---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVCNFTE 368 (463)
Q Consensus 304 -----------~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~ 368 (463)
. ...+.+...+.++.++++ ....+ .++++++++++++++.+.|++. |+.+..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 317 (416)
T 3isl_A 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVR----------LVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDD 317 (416)
T ss_dssp TCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCG
T ss_pred cchHHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCc
Confidence 1 123445666666655542 22333 5678889999999999999996 88887775
Q ss_pred c---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc-HHHHHHH
Q 041151 369 G---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED-MPAIMES 442 (463)
Q Consensus 369 g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~-i~~~~~~ 442 (463)
+ +.+++ +.+|.+ .+..++...+++++||.+.+|.... ..+++||++. .+.++ +++++++
T Consensus 318 ~~~~~~~~~--~~~~~~----------~~~~~l~~~L~~~~gi~v~~g~~~~---~~~~iRi~~~~~~~~~e~i~~~~~~ 382 (416)
T 3isl_A 318 SCKMPVVTC--VEIPGG----------IDGESVRDMLLAQFGIEIASSFGPL---AGKIWRIGTMGYSCRKENVLFVLAG 382 (416)
T ss_dssp GGBCTTEEE--EECCTT----------CCHHHHHHHHHHHHCEECBCCCSTT---TTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred cccCCcEEE--EeCCCC----------CCHHHHHHHHHHhCCEEEecCCCCC---CCCEEEEecccCCCcHHHHHHHHHH
Confidence 4 34555 344432 1245666665566699999987432 3458999994 55566 9999999
Q ss_pred HHHHHHHH
Q 041151 443 FKKFNDEF 450 (463)
Q Consensus 443 l~~~l~~~ 450 (463)
|+++++++
T Consensus 383 l~~~~~~~ 390 (416)
T 3isl_A 383 LEAVLLRH 390 (416)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998764
No 125
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.96 E-value=3.8e-28 Score=243.92 Aligned_cols=299 Identities=14% Similarity=0.099 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC------CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG------EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g 155 (463)
++.+++++.+++.........| ..++++++++.+.+.+| +++|++|+|+++++..++.++. . +|
T Consensus 58 ~~~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~~ 127 (397)
T 2ord_A 58 HPRLVEAIKDQAEKLIHCSNLF-----WNRPQMELAELLSKNTF----GGKVFFANTGTEANEAAIKIAR-KYGKKKSEK 127 (397)
T ss_dssp CHHHHHHHHHHHHHCSCCCTTS-----EEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHH-HHHHHHCTT
T ss_pred CHHHHHHHHHHHHhcccCcccc-----CCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHH-HHhhcCCCC
Confidence 7889999988887631111112 13455556666555444 5899999999999999999885 3 54
Q ss_pred -CEEEEc---c-----------Ccee-c---------CCCc-ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc-C
Q 041151 156 -DGVVLL---F-----------HTTW-K---------RQQI-GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ-C 208 (463)
Q Consensus 156 -d~Vlvp---~-----------g~~~-~---------~~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~-~ 208 (463)
+.|+++ + |.+. . .... ..|+ +.|++.+++ ++++|++++|+||||. +
T Consensus 128 ~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~ 200 (397)
T 2ord_A 128 KYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV-EDLRRKMSE------DVCAVFLEPIQGESGIVP 200 (397)
T ss_dssp CCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH-HHHHHHCCT------TEEEEEECSEECTTTCEE
T ss_pred CceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH-HHHHHHhhc------CeEEEEEecccCCCCccc
Confidence 667764 2 2110 0 0000 1378 999998876 7999999999999999 9
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++.+++++|+++|+++|++||+||+|..+.+. +. ..++..+ +....+ .||||++ + +|+|+||+++
T Consensus 201 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~-~~~~~~~--------~~~~d~---~s~sK~~-~-~G~r~G~~~~ 265 (397)
T 2ord_A 201 ATKEFLEEARKLCDEYDALLVFDEVQCGMGRT-GK-LFAYQKY--------GVVPDV---LTTAKGL-G-GGVPIGAVIV 265 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSHHHHH--------TCCCSE---EEECGGG-G-TTSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecccCCccC-cc-chhhhhh--------CCCCCe---eeecccc-C-CCcCeEEEEE
Confidence 99999999999999999999999999876542 22 2222222 211122 2889999 6 8999999995
Q ss_pred cCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-Cccc--
Q 041151 289 TNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR-NVVC-- 364 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p-g~~~-- 364 (463)
+++++ .+.... ..+++.+.+.|.++.++|+. ..+ ++++++++++++++.+.|++++ ++..
T Consensus 266 ---~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~-----------~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 329 (397)
T 2ord_A 266 ---NERAN-VLEPGDHGTTFGGNPLACRAGVTVIKE-----------LTK-EGFLEEVEEKGNYLMKKLQEMKEEYDVVA 329 (397)
T ss_dssp ---CSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHH-----------HTS-TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred ---chHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHH-----------HHh-CCHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 66665 554322 24567788999888887641 111 3466778888888888887642 2222
Q ss_pred -ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 365 -NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 365 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
..+.| .++|+++. .. .+..++.. .|.++||.+.|+. .+++||+++ .++++++++++
T Consensus 330 ~~~~~g-~~~~~~~~--~~----------~~~~~l~~-~l~~~gi~v~~~~-------~~~iRis~~~~~~~e~i~~~~~ 388 (397)
T 2ord_A 330 DVRGMG-LMIGIQFR--EE----------VSNREVAT-KCFENKLLVVPAG-------NNTIRFLPPLTVEYGEIDLAVE 388 (397)
T ss_dssp EEEEET-TEEEEEEC--TT----------SCHHHHHH-HHHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHH
T ss_pred EEEEEe-EEEEEEEC--Ch----------HHHHHHHH-HHHHCCCEEccCC-------CCEEEEECCcCCCHHHHHHHHH
Confidence 23344 55665543 21 02344444 4556899999962 348999965 78999999999
Q ss_pred HHHHHHHH
Q 041151 442 SFKKFNDE 449 (463)
Q Consensus 442 ~l~~~l~~ 449 (463)
+|++++++
T Consensus 389 ~l~~~l~~ 396 (397)
T 2ord_A 389 TLKKVLQG 396 (397)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99988753
No 126
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=2.5e-27 Score=238.58 Aligned_cols=302 Identities=10% Similarity=0.012 Sum_probs=213.4
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCc-EEEcCCcHHHHHHHHHHHhcCCCC
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~gd 156 (463)
.+++.+++++.+.+. ..|.+ .....++++.+++++ | .+.++ |++|+|+++++..++.+++ ++||
T Consensus 23 ~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~v~~~~sgt~al~~~~~~~~-~~gd 89 (411)
T 3nnk_A 23 NADPRVLRAMSSQLI------GQYDPAMTHYMNEVMALYRGVF----R--TENRWTMLVDGTSRAGIEAILVSAI-RPGD 89 (411)
T ss_dssp CCCHHHHHHHTSCCC------CTTCHHHHHHHHHHHHHHHHHH----T--CCCSEEEEEESCHHHHHHHHHHHHC-CTTC
T ss_pred CCCHHHHHHhhcccc------ccccHHHHHHHHHHHHHHHHHh----C--CCCCcEEEECCCcHHHHHHHHHHhc-CCCC
Confidence 347888777654321 12221 112245556666555 4 34454 8888999999999999997 9999
Q ss_pred EEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHH
Q 041151 157 GVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI 217 (463)
Q Consensus 157 ~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l 217 (463)
+|+++ .|.++ ...++.+|+ +.|++++++. ++++|++++|+||||.+.+ +++|
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i 160 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTP-DQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAEL 160 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTH
T ss_pred EEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCH-HHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHH
Confidence 99997 34444 344677899 9999999864 7999999999999999988 7788
Q ss_pred HHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 218 LRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 218 ~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
.++|++||++||+|++|+.... ...+ ...+..+++.|+||++++.+ ++||+++ ++++++
T Consensus 161 ~~l~~~~~~~li~Dea~~~~~~-----~~~~-----------~~~~~d~~~~s~~K~l~~~~--g~g~~~~---~~~~~~ 219 (411)
T 3nnk_A 161 GEICRRYDALFYTDATASLGGN-----PLET-----------DVWGLDAVSAGMQKCLGGPS--GTSPITL---SARMEE 219 (411)
T ss_dssp HHHHHHHTCEEEEECTTTBTTB-----CCCT-----------TTTTCSEEECCSTTTTCCCS--SEEEEEE---CHHHHH
T ss_pred HHHHHHcCCEEEEECCcccCCc-----ccch-----------hccCCcEEEecCccccCCCC--ceEEEEE---CHHHHH
Confidence 8899999999999999875322 1111 22224589999999864544 5899994 888988
Q ss_pred HHHhhh------------------------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HH
Q 041151 298 EIYKIA------------------------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SK 339 (463)
Q Consensus 298 ~l~~~~------------------------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~ 339 (463)
.+.+.. . ...+.+...+.++..+++ ....+ ++
T Consensus 220 ~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~ 289 (411)
T 3nnk_A 220 AIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECAR----------LILQEGLD 289 (411)
T ss_dssp HHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH----------HHHHHCHH
T ss_pred HHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHH----------HHHHhhHH
Confidence 887643 0 113445556666555542 22333 56
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 340 GILESLRRRARMMTDGFNSCRNVVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 340 ~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+++++++++++++.+.|+++ |+.+..+.+ +.++++ .+|.+. +..++...+++++||.+++|...
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~l~~~l~~~~gi~v~~g~~~ 356 (411)
T 3nnk_A 290 YGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGV--VIPQGI----------NGDQARKLMLEDFGIEIGTSFGP 356 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEE--ECCTTC----------CHHHHHHHHHHHHSEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEE--ECCCCC----------CHHHHHHHHHHhcCeEEeCccCC
Confidence 78889999999999999987 888776654 456664 444321 24555556666679999998432
Q ss_pred CCCCCCcEEEEEe-c--CCcCcHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTI-L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 417 ~~~~~~~~lRis~-~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. ..+++||++ + .+++++++++++|+++++++
T Consensus 357 ~---~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 357 L---HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp G---TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred C---CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 2 235899998 5 47899999999999998765
No 127
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=1e-27 Score=235.99 Aligned_cols=301 Identities=13% Similarity=0.057 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++.+++++.+.... ...|.+..+..+||++++++++ . +++++++|+++++..++.+++ +|||+|+++
T Consensus 17 ~~~~~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g------~--~~~~~~~~gt~a~~~~~~~~~-~~gd~Vl~~ 83 (347)
T 1jg8_A 17 TEEMRKAMAQAEVG----DDVYGEDPTINELERLAAETFG------K--EAALFVPSGTMGNQVSIMAHT-QRGDEVILE 83 (347)
T ss_dssp CHHHHHHHHTCCCC----CGGGTCCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred CHHHHHHHhcCCCC----CcccCCChHHHHHHHHHHHHhC------C--ceEEEecCcHHHHHHHHHHhc-CCCCEEEEc
Confidence 56677776544321 2367777788999999999985 2 467778888899999999997 899999997
Q ss_pred ----------------cCcee--c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHh
Q 041151 162 ----------------FHTTW--K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFC 221 (463)
Q Consensus 162 ----------------~g~~~--~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a 221 (463)
.|+++ . ...+.+|+ +.|++++++.....+++++|++++||||| |.+++.+++++|+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a 162 (347)
T 1jg8_A 84 ADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDP-DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIA 162 (347)
T ss_dssp TTCHHHHSSTTHHHHHTCCEEEEECEETTEECH-HHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred CcchhhhccccchhhccCeEEEEecCCCCccCH-HHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHH
Confidence 13333 2 22345799 99999886310001158999999999999 9999999999999999
Q ss_pred hhCCeEEEecccccccc--cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 222 YQENLVLLGDEVYQQNI--YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+++|++||+|++|.... + .+. +...+.... + +++.|+||++ +++ +||+++ +++++++.+
T Consensus 163 ~~~~~~li~D~a~~~~~~~~-~~~---~~~~~~~~~-------d--~~~~s~sK~l-~~~---~G~~~~--~~~~~~~~~ 223 (347)
T 1jg8_A 163 KEHGINVHIDGARIFNASIA-SGV---PVKEYAGYA-------D--SVMFCLSKGL-CAP---VGSVVV--GDRDFIERA 223 (347)
T ss_dssp HHHTCEEEEEETTHHHHHHH-HCC---CHHHHHHTC-------S--EEEEESSSTT-CCS---SCEEEE--ECHHHHHHH
T ss_pred HHCCCEEEeehhhhhcchhh-cCC---ChHHhcccc-------c--EEEEeccccc-CCC---ceEEEE--cCHHHHHHH
Confidence 99999999999875321 2 111 222221111 1 2345899998 543 575433 588888888
Q ss_pred Hhhhh-hcc--cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEee
Q 041151 300 YKIAS-IAL--SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFP 375 (463)
Q Consensus 300 ~~~~~-~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~ 375 (463)
.+++. ... ..+.+.+.++...++ .+.+ .+. +..++++.+.+.|+++ |+.+. .+..+.|+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~---~~~-~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~ 288 (347)
T 1jg8_A 224 RKARKMLGGGMRQAGVLAAAGIIALT----------KMVD---RLK-EDHENARFLALKLKEI-GYSVNPEDVKTNMVIL 288 (347)
T ss_dssp HHHHHHHTCCCSSTHHHHHHHHHHHH----------HSST---THH-HHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEE
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHH----------HHHH---HHH-HHHHHHHHHHHHHHhc-CceeccCCCcceEEEE
Confidence 76654 222 223344444444432 1111 112 2234667788888877 76642 2334456775
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.++. .+ .+..+++.. |.++||.++++. .+++|+++. .+++++++++++|++++++
T Consensus 289 ~~~~-~~----------~~~~~~~~~-l~~~gi~v~~~~-------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 289 RTDN-LK----------VNAHGFIEA-LRNSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ECTT-SS----------SCHHHHHHH-HHHHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred Eccc-cc----------CCHHHHHHH-HHHCCCEEecCC-------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 5431 01 124455544 557899999842 247999996 6889999999999998764
No 128
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=4.7e-27 Score=233.77 Aligned_cols=303 Identities=13% Similarity=0.115 Sum_probs=206.5
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
+|+.+++++.+.+.. .|.+ +..++.+++++++.+.+|.+.+.+.+++|+|+++++..++.+++ ++||+|++
T Consensus 30 ~~~~v~~a~~~~~~~------~~~~--~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-~~gd~vi~ 100 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY------FRTT--EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-TKKDKVLV 100 (376)
T ss_dssp CCHHHHHHHTSCCCC------CSSH--HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-CTTCCEEE
T ss_pred CcHHHHHHhcCCCCC------CCCH--HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-CCCCeEEE
Confidence 388888887654322 2222 23456666666666666664333456669999999999999997 89999988
Q ss_pred c---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|.++ ...++.+|+ +.|++.+++ ++++|++++|+||||.+++ +++|.++|
T Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~ 170 (376)
T 3f0h_A 101 IDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTK-EKLYEYDNQ------NFTGLLVNVDETSTAVLYD---TMMIGEFC 170 (376)
T ss_dssp EESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCH-HHHHTTTTS------CCCEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHHHhhcc------CceEEEEecccCCcceecC---HHHHHHHH
Confidence 6 34444 344678999 999987765 8999999999999999999 88888899
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++|++||+|++|+.+.. ...+... + ..+++.|+||++++++| +|+++ .++++++.+..
T Consensus 171 ~~~~~~li~D~~~~~~~~-----~~~~~~~--------~---~d~~~~s~~K~l~~~~G--~g~~~---~~~~~~~~~~~ 229 (376)
T 3f0h_A 171 KKNNMFFVCDCVSAFLAD-----PFNMNEC--------G---ADVMITGSQKVLACPPG--ISVIV---LAPRGVERVEK 229 (376)
T ss_dssp HHTTCEEEEECTTTTTTS-----CCCHHHH--------T---CSEEEEETTTTTCCCSS--CEEEE---ECHHHHHHHHT
T ss_pred HHcCCEEEEEcCccccCc-----ccccccc--------C---ccEEEecCcccccCCCc--eEEEE---ECHHHHHHhhc
Confidence 999999999999986432 1222221 1 24888999999943777 57777 48888888875
Q ss_pred hhh------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 302 IAS------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 302 ~~~------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
... ...+++...+.++.++++ ...++ ++.++++++++++++.+.|+++ |
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~ 298 (376)
T 3f0h_A 230 SKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK----------EIKKHGGADAEVARIASQAADFRAKIKDL-P 298 (376)
T ss_dssp CCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHHTTTS-S
T ss_pred CCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 321 022333333344444432 12222 4567888899999999999987 6
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+.+..+.....++... +.+ .+..++...+++++||.+++|... .+.+++||++. .++++++++
T Consensus 299 ~~~~~~~~~~~~~~~~--~~~----------~~~~~l~~~l~~~~gi~v~~g~~~---~~~~~lRis~~~~~t~e~i~~~ 363 (376)
T 3f0h_A 299 FELVSESPANGVTSVH--PTT----------ANAYDIFLKLKDEYGIWICPNGGE---MKDTIFRVGHIGALTHEDNTTL 363 (376)
T ss_dssp EEECCSSBBTTEEEEE--ESS----------SCHHHHHHHHHHHSSEECEECCGG---GTTTCEEEECCSSCCHHHHHHH
T ss_pred CccCccccCceEEEEe--CCC----------CCHHHHHHHHHHhCCEEEecCccc---cCCCEEEEecCCCCCHHHHHHH
Confidence 7665544333222111 111 124455555555459999998422 13458999997 689999999
Q ss_pred HHHHHHHHHH
Q 041151 440 MESFKKFNDE 449 (463)
Q Consensus 440 ~~~l~~~l~~ 449 (463)
+++|++++++
T Consensus 364 ~~~l~~~l~~ 373 (376)
T 3f0h_A 364 VNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 129
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.9e-27 Score=239.40 Aligned_cols=304 Identities=12% Similarity=0.068 Sum_probs=202.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-CCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-EGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vlv 160 (463)
|+.+++++.+++... ..|++..+..+++.++++.+.+.+|... +++|++|+|+++++..+++++. . +|+.|++
T Consensus 61 ~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~~~ai~~~~-~~~~~~vi~ 134 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKL----AHAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAIEASIKVVK-NTGRKYIIA 134 (419)
T ss_dssp CHHHHHHHHHHHTTS----CCCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHH-TTSCCEEEE
T ss_pred CHHHHHHHHHHHhhC----ccccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHHHHHHHHHH-HhhCCcEEE
Confidence 688999999888652 1233333334556666666666666543 7899999999999999999875 4 4888888
Q ss_pred c---cC-----------c-------------ee---cC-CCc----c------------cChHHHHH-HHHHHHHhcCCc
Q 041151 161 L---FH-----------T-------------TW---KR-QQI----G------------VLIINDLQ-QSVAQARSKGIT 192 (463)
Q Consensus 161 p---~g-----------~-------------~~---~~-~~~----~------------~d~~~~l~-~~l~~~~~~~~~ 192 (463)
+ +. . .+ +. +.+ + +|+ +.|+ +.+++. ....+
T Consensus 135 ~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~-~~l~~~~i~~~-~~~~~ 212 (419)
T 2eo5_A 135 FLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVI-EFIEDYIFVNL-VPPEE 212 (419)
T ss_dssp ETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHH-HHHHHTHHHHT-CCGGG
T ss_pred ECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHH-HHHHHHHHhhc-cCCCC
Confidence 5 21 0 11 11 222 2 367 8999 888741 00014
Q ss_pred eeEEEEECCC-CCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIINPG-NPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~p~-NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+++| +++|+ ||||. +++.+++++|.++|++||++||+||+|.++.+. +. ...+... +. .. ++ .|
T Consensus 213 ~~~v-i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~-g~-~~~~~~~--~~----~~--d~---~t 278 (419)
T 2eo5_A 213 VAGI-FFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRT-GK-LFAIENF--NT----VP--DV---IT 278 (419)
T ss_dssp EEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGGG--TC----CC--SE---EE
T ss_pred EEEE-EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccC-cc-hhhHHhc--CC----CC--CE---EE
Confidence 5554 56664 67896 678889999999999999999999999986542 22 1111111 11 12 22 38
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
|||+| + +| +|+||++. +++++ .+......+++.+.+.|.++.++|+ ... ++++++++++
T Consensus 279 ~sK~~-~-~G~~riG~~~~---~~~~~-~~~~~~~~t~~~n~~~~~aa~aal~-----------~~~---~~~~~~~~~~ 338 (419)
T 2eo5_A 279 LAKAL-G-GGIMPIGATIF---RKDLD-FKPGMHSNTFGGNALACAIGSKVID-----------IVK---DLLPHVNEIG 338 (419)
T ss_dssp ECGGG-G-TTTSCCEEEEE---EGGGC-CC------CCCCCHHHHHHHHHHHH-----------HHH---HHHHHHHHHH
T ss_pred ecccc-c-CCccceEEEEE---chHhh-cCCcccCCCCCCCHHHHHHHHHHHH-----------HHH---HHHHHHHHHH
Confidence 99999 6 49 99999994 77777 6621233467889999999988863 122 2677889999
Q ss_pred HHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 350 RMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+++.+.|+++ +....+.|. |+|+++. +... ...++.. |.++||.++|+. .+++||++
T Consensus 339 ~~l~~~L~~~--~~~~~~~g~-~~~i~~~-~~~~-----------~~~~~~~-l~~~Gv~v~~~~-------~~~lRis~ 395 (419)
T 2eo5_A 339 KIFAEELQGL--ADDVRGIGL-AWGLEYN-EKKV-----------RDRIIGE-SFKRGLLLLPAG-------RSAIRVIP 395 (419)
T ss_dssp HHHHHHHTTS--SSEEEEETT-EEEEECS-CHHH-----------HHHHHHH-HHHTTEECEEET-------TTEEEECC
T ss_pred HHHHHHHHHh--hhheEeeeE-EEEEEEe-cCcc-----------HHHHHHH-HHHCCCEEecCC-------CCEEEEEC
Confidence 9999999876 333445554 5554442 2210 1234444 558899999963 24899987
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ .+++++++++++|+++++++
T Consensus 396 ~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 396 PLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 6 78999999999999988653
No 130
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=7.4e-27 Score=230.75 Aligned_cols=297 Identities=12% Similarity=0.146 Sum_probs=209.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
|+.+++++.+++.+. ..+|. ...+..++.+++.+++.+.+|.+ ++++|++|+|+++++..++.++. ++ +.+++
T Consensus 16 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l~-~~-~~i~~ 89 (362)
T 3ffr_A 16 YPTVRQHMITALDEK---IGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNCV-EK-KSFHC 89 (362)
T ss_dssp CTTHHHHHHHHHHTT---TTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHHC-SS-EEEEE
T ss_pred CHHHHHHHHHHhcCC---ccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhcc-CC-cEEEE
Confidence 888998888877652 21121 12233456666666666666653 56799999999999999999997 77 54444
Q ss_pred c--------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L--------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p--------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
. .|+++ ...++.+|+ +.|+ +++ ++++|++++|+||||.+++ +++|.++|+
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~--~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~ 157 (362)
T 3ffr_A 90 VNGSFSKRFYEFAGELGREAYKEEAAFGKGFYP-ADIT--VPA------DAEIICLTHNETSSGVSMP---VEDINTFRD 157 (362)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCG-GGCC--CCT------TCCEEEEESEETTTTEECC---HHHHTTSGG
T ss_pred cCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCH-HHHh--ccC------CccEEEEEcCCCCcceeCC---HHHHHHHHH
Confidence 3 45555 345678899 9998 443 8999999999999999999 677888999
Q ss_pred hC-CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 223 QE-NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 223 ~~-~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+| |++||+|++|+.+.. + ..+ .. ..+++.|+||++++++| +|++++ ++++++.+..
T Consensus 158 ~~p~~~li~D~a~~~~~~----~-~~~-----------~~--~d~~~~s~~K~~~~~~G--~g~~~~---~~~~~~~~~~ 214 (362)
T 3ffr_A 158 KNKDALIFVDAVSSLPYP----K-FDW-----------TK--IDSVFFSVQKCFGLPAG--LGVWIL---NDRVIEKSKA 214 (362)
T ss_dssp GSTTSEEEEECTTTTTSS----C-CCT-----------TS--CSEEEEETTSTTCCCSC--CEEEEE---EHHHHHHHHH
T ss_pred hCCCCEEEEecccccCCc----c-cCh-----------hH--CcEEEEecccccCCCCc--eEEEEE---CHHHHHHhhh
Confidence 99 999999999986432 1 111 11 23788999999933788 566763 7888887766
Q ss_pred hhh----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Q 041151 302 IAS----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 302 ~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~ 358 (463)
... ...+++...+.++..+++ ..... .++++++++++++++.+.|++
T Consensus 215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~ 284 (362)
T 3ffr_A 215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTG----------DMLQISADGIRKQTEEKAALINTYIES 284 (362)
T ss_dssp HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHH----------HHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 432 134556666666666542 11111 466888899999999999999
Q ss_pred CCCcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CC
Q 041151 359 CRNVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PA 432 (463)
Q Consensus 359 ~pg~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~ 432 (463)
+||+.+..+. +++++|+.+. . +..++. +.|.++||.+.+|..+. +.+++||+++ .+
T Consensus 285 ~~g~~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~-~~l~~~gi~~~~g~~~~---~~~~iRis~~~~~~ 346 (362)
T 3ffr_A 285 SKVFSFGVEDAKLRSMTTIVANTT--M------------LPGEIN-KILEPFDMAVGAGYGSK---KETQIRIANFPAHS 346 (362)
T ss_dssp CSSEEESSSCGGGBCSSEEEEEES--S------------CHHHHH-HHHGGGTEEEEECSGGG---TTTEEEEECCTTSC
T ss_pred ccCceeccCChhhcCCceEEEecC--C------------CHHHHH-HHHHHCCeEEecCcccc---CCCEEEEECCCCCC
Confidence 9898877632 3456664443 1 134544 44666699999985443 3358999998 68
Q ss_pred cCcHHHHHHHHHHHH
Q 041151 433 EEDMPAIMESFKKFN 447 (463)
Q Consensus 433 ~e~i~~~~~~l~~~l 447 (463)
++++++++++|++++
T Consensus 347 ~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 347 LEQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999988764
No 131
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.95 E-value=4.9e-28 Score=247.46 Aligned_cols=294 Identities=12% Similarity=0.101 Sum_probs=194.4
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----------------- 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----------------- 161 (463)
....|+ ..|.+ +++++++++.+.+|. +++++++|+++++..++. ++ ++||+|+++
T Consensus 123 ~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 194 (464)
T 1ibj_A 123 GPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPR 194 (464)
T ss_dssp CSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGG
T ss_pred CCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHH
Confidence 345677 45665 788888888887763 467777777899998886 66 899999997
Q ss_pred cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 162 FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 162 ~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
.|+++ ... ..|+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++|++||+||+|.....
T Consensus 195 ~G~~v~~v~--~~d~-~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~- 261 (464)
T 1ibj_A 195 SGVVVKRVN--TTKL-DEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL- 261 (464)
T ss_dssp GTCEEEEEC--TTSH-HHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT-
T ss_pred cCCEEEEeC--CCCH-HHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 23333 111 1278 999998876 8999999999999999996 78888899999999999999975321
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGL 319 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~ 319 (463)
..++ . .+++|++.|+||++++.+|+|+||+++ .++++++.+..... ...+.+.+.|.++..
T Consensus 262 ----~~~~-----------~-~~~div~~S~sK~~~g~~Gl~~G~l~~--~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~ 323 (464)
T 1ibj_A 262 ----SRPL-----------E-LGADIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFDCWLCLR 323 (464)
T ss_dssp ----CCGG-----------G-TTCSEEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred ----CChh-----------h-cCCEEEEECCcccccCCCCCcEEEEEE--ChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 1111 1 124689999999995555999999996 33588888877764 456678888888877
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCCcccccCCc---eeEEeeeccCChhhHHHHhhcCCC
Q 041151 320 MVNPLKPGDISYEQFVRESKGILESLRRR---ARMMTDGFNSCRNVVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKV 393 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~L~~~pg~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~ 393 (463)
.++... ..++........+.+.++++ ++++++.|+++||+.+..++. +.++++.+. ..
T Consensus 324 al~~~~---~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~--~~----------- 387 (464)
T 1ibj_A 324 GIKTMA---LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--SV----------- 387 (464)
T ss_dssp HHTTHH---HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS--CH-----------
T ss_pred chhhHH---HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC--CH-----------
Confidence 775210 11222222111121111111 122334555567777766542 234554442 11
Q ss_pred ChHHHHHHHHHhcCeEeeCCC------------CCCCC--------CCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 394 PDVFYCLRLLEATGISTVPGS------------GFGQK--------EGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 394 ~~~~~~~~ll~~~gI~v~pg~------------~f~~~--------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+..+.+.+.|+..||.+++|. .++.+ .+.+++|||++. |++++++++|++++++
T Consensus 388 ~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 388 ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence 012223334556799998886 22211 124589999998 8999999999998753
No 132
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.95 E-value=1.7e-27 Score=238.95 Aligned_cols=300 Identities=10% Similarity=0.058 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-cCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-RGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~gd~Vlv 160 (463)
|+.+.+++.+++.........| +.....++++.++++ ++ +++++|++|+|+++++..++.++. ..+|+.|++
T Consensus 63 ~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~----~~--~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~ 135 (395)
T 1vef_A 63 NPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAI----LP--PELNRVFPVNSGTEANEAALKFARAHTGRKKFVA 135 (395)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHT----SC--TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred CHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHh----cC--CCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEE
Confidence 8899999998887631111123 222234455555444 34 467899999999999999998762 036777777
Q ss_pred c---c-----------Ccee------c--CCCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CHHHH
Q 041151 161 L---F-----------HTTW------K--RQQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SEANL 214 (463)
Q Consensus 161 p---~-----------g~~~------~--~~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~~~l 214 (463)
+ + |.+. + .+.. ..|+ ++|++.+++ ++++|+++.++||||.++ +.+++
T Consensus 136 ~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l 208 (395)
T 1vef_A 136 AMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDV-EALKRAVDE------ETAAVILEPVQGEGGVRPATPEFL 208 (395)
T ss_dssp ETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCH-HHHHHHCCT------TEEEEEECSEETTTTSEECCHHHH
T ss_pred EcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcH-HHHHHHhcc------CEEEEEEeCccCCCCccCCCHHHH
Confidence 5 2 2110 0 0010 1588 999998875 789887766689999764 78889
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|++||++||+||+|..+.+ .+. ..++... +. .. .++ ||||++ +. |+|+||+++ +++
T Consensus 209 ~~i~~l~~~~~~~li~Dea~~~~~~-~g~-~~~~~~~--~~----~~--d~~---s~sK~~-~~-g~~~G~~~~---~~~ 270 (395)
T 1vef_A 209 RAAREITQEKGALLILDEIQTGMGR-TGK-RFAFEHF--GI----VP--DIL---TLAKAL-GG-GVPLGVAVM---REE 270 (395)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTT-TSS-SSTHHHH--TC----CC--SEE---EECGGG-GT-TSSCEEEEE---EHH
T ss_pred HHHHHHHHHcCCEEEEEecccCCcc-CCc-hhHhhhc--CC----CC--CEE---EEcccc-cC-CCceEEEEe---hHH
Confidence 9999999999999999999996533 122 1122111 11 12 222 889999 64 899999995 777
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCcee
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN--FTEGAM 371 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--~~~g~~ 371 (463)
+++.+..... .+++.+.+.|.++.++++ .... +.+.++++++++++.+.|++++ ..+. .+..++
T Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~ 337 (395)
T 1vef_A 271 VARSMPKGGHGTTFGGNPLAMAAGVAAIR-----------YLER-TRLWERAAELGPWFMEKLRAIP-SPKIREVRGMGL 337 (395)
T ss_dssp HHHTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-HTTHHHHHHHHHHHHHHHHTSC-CTTEEEEEEETT
T ss_pred HHhhhccCCcCCCcCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEE
Confidence 7776655322 356678888888877763 2222 3467788889999999998873 2221 223456
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
++|+.++ . +..++...+++++||.+.|+. .+++||+++ .+++++++++++|++++
T Consensus 338 ~~~~~~~--~------------~~~~l~~~l~~~~gi~v~~~~-------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 338 MVGLELK--E------------KAAPYIARLEKEHRVLALQAG-------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEEES--S------------CSHHHHHHHHHHHCEECEESS-------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEc--C------------hHHHHHHHHHHHCCeEEecCC-------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 7775553 1 134555555437899999852 348999886 78899999999998875
No 133
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=6.7e-28 Score=241.95 Aligned_cols=304 Identities=12% Similarity=0.047 Sum_probs=189.9
Q ss_pred cHHHHHHHHHHhhhcCCC-CCccCCC----CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cC
Q 041151 82 PADAIARAKHYLSLTSGG-LGAYSDS----RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~ 153 (463)
|+.+++++.+.+...... ...|... ....++++.++++++ +++++|++|+|+++++..++.+++ .+
T Consensus 33 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~v~~~~g~t~al~~~~~~l~~~~~~ 106 (400)
T 3vax_A 33 DQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS------AEPDELIFTSGATESNNIALLGLAPYGER 106 (400)
T ss_dssp CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT------CCGGGEEEESCHHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC------CCCCcEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 889999998877642111 0112211 123455555655554 567899999999999999999884 15
Q ss_pred CCC-EEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 154 EGD-GVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 154 ~gd-~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
+|| .|+++ .|.++ ...++.+|+ ++|++++++ ++++|++++|+||||.+++
T Consensus 107 ~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~-- 177 (400)
T 3vax_A 107 TGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISV-EGVMERLRP------DTLLVSLMHVNNETGVIQP-- 177 (400)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCH-HHHHTTCCT------TEEEEECCSBCTTTCBBCC--
T ss_pred CCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCH-HHHHHhcCC------CceEEEEECCCCCceeeCc--
Confidence 899 99995 36666 334677899 999999886 7999999999999999998
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE-ecCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE-MTNI 291 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~-~~~~ 291 (463)
+++|.++|+++|++||+|++|+.... ...+ ... ..+++.|+||.+ |++| +|+++ + .
T Consensus 178 -l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~-----------~~~-~d~~~~s~~K~~-g~~g--~g~~~~~--~ 234 (400)
T 3vax_A 178 -VAELAQQLRATPTYLHVDAAQGYGKV-----PGDL-----------TTP-IDMISISGHKIG-APKG--VGALVTR--R 234 (400)
T ss_dssp -HHHHHHHHTTSSCEEEEECTTTTTTS-----GGGG-----------GSC-CSEEEEETGGGT-SCSS--CEEEEEC--B
T ss_pred -HHHHHHHHHhcCCEEEEEhhhhcCCC-----CcCh-----------hhc-CcEEEEeHHHhC-CCCc--eEEEEEe--c
Confidence 67888899999999999999985321 1111 211 347899999966 7666 56665 5 2
Q ss_pred ChhHH---HHHHhhh-------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041151 292 PPKTV---DEIYKIA-------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 292 ~~~~~---~~l~~~~-------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
++++. ..+.... . ...+.+...+.++..+++ ...++.++++++++++++++.+.|+ .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~-~~ 303 (400)
T 3vax_A 235 REEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAK----------IFEAEHAQWQVAAQDLRSRLLAGLA-ST 303 (400)
T ss_dssp CSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHSHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred chhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHhhC-CC
Confidence 32111 1111111 1 134455666666655542 2233456788899999999999999 78
Q ss_pred CcccccCCce---eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-------------C---C
Q 041151 361 NVVCNFTEGA---MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-------------E---G 421 (463)
Q Consensus 361 g~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-------------~---~ 421 (463)
|+.+..+.++ .++++ .++.. +..++ .+.|. +||.+++|..|... + .
T Consensus 304 ~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~l-~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 368 (400)
T 3vax_A 304 SFQVNGDQDHVVPHILNL--SFEDV-----------DAEAF-LVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAA 368 (400)
T ss_dssp TCEECSCTTSBCTTEEEE--ECTTC-----------CHHHH-HHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHH
T ss_pred CEEEeCCcccCCCCEEEE--EeCCC-----------CHHHH-HHHHh-cCcEEEecccccCCCCCccHHHHHcCCCcccc
Confidence 9988776652 23342 33321 23444 45566 89999998766431 0 0
Q ss_pred CcEEEEEe-c--CCcCcHHHHHHHHHHHHHH
Q 041151 422 IFHLRTTI-L--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 422 ~~~lRis~-~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++||++ + .+++++++++++|++++++
T Consensus 369 ~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 369 SKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TSEEEEEEEEC--------------------
T ss_pred CceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 36899999 6 6789999999999988754
No 134
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.95 E-value=3.8e-27 Score=239.89 Aligned_cols=312 Identities=13% Similarity=0.075 Sum_probs=206.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhc-CCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIR-GEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl 159 (463)
++.+++++.+++... ..|+...+..++++++++++.+.++. .. ++|++|+|+++++..+++++.. .+++.|+
T Consensus 61 ~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi 134 (439)
T 3dxv_A 61 HPAIVAAVSAAAANP----AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDANEAAYRAIVKATGRSGVI 134 (439)
T ss_dssp CHHHHHHHHHHHHSC----SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred CHHHHHHHHHHHHhc----cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 889999999888762 34655667778889999988876543 34 7999999999999999998520 2455565
Q ss_pred Ec---c-Ccee---------------------------cCCC-ccc-----ChHHHHHHHHHHHHhcCCceeEEEEECCC
Q 041151 160 LL---F-HTTW---------------------------KRQQ-IGV-----LIINDLQQSVAQARSKGITVRAMVIINPG 202 (463)
Q Consensus 160 vp---~-g~~~---------------------------~~~~-~~~-----d~~~~l~~~l~~~~~~~~~~~~i~l~~p~ 202 (463)
+. + |... +... +.. |+ +.|+++++.. ...++++|+++.++
T Consensus 135 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~--~~~~~~~vi~~p~~ 211 (439)
T 3dxv_A 135 AFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL-TLLTEKLAAV--PAGSIGAAFIEPIQ 211 (439)
T ss_dssp EETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHH-HHHHHHHHTS--CTTCEEEEEECSSB
T ss_pred EECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHH-HHHHHHHHhc--CCCCEEEEEEcccc
Confidence 53 1 1111 1000 001 57 9999998510 01167888888888
Q ss_pred CCCccCCC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCc
Q 041151 203 NPTGQCLS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281 (463)
Q Consensus 203 NPtG~~~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~ 281 (463)
|++|.+.+ .+.+++|.++|++||++||+||+|..+... +. ..... .+ +....+ .||||++ + +|+
T Consensus 212 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~-g~-~~~~~----~~----~~~~di---~s~sK~~-~-~G~ 276 (439)
T 3dxv_A 212 SDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARS-GR-LHCFE----HE----GFVPDI---LVLGKGL-G-GGL 276 (439)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTT-SS-SSGGG----GT----TCCCSE---EEECGGG-G-TTS
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-ch-hhHHH----hc----CCCCCE---EEEcchh-c-CCc
Confidence 88888665 445999999999999999999999975432 21 11111 11 111122 3999999 6 699
Q ss_pred eeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 041151 282 RGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-- 358 (463)
Q Consensus 282 R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 358 (463)
|+||++ +++++++.+.+... .++ .+++.|.++.++++ .... +.+.++++++++.+.+.|.+
T Consensus 277 riG~~~---~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~ 340 (439)
T 3dxv_A 277 PLSAVI---APAEILDCASAFAMQTLH-GNPISAAAGLAVLE-----------TIDR-DDLPAMAERKGRLLRDGLSELA 340 (439)
T ss_dssp CCEEEE---EEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEE---ECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 58888887766543 456 88899988888763 1111 23445555555566555544
Q ss_pred --CCCcccccCCceeEEeeeccC------ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 359 --CRNVVCNFTEGAMYSFPQIRL------PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 359 --~pg~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
+|.+....+.|. |+|+.+.- |... +...+. ..|.++||.+.|+..+ .+++||+++
T Consensus 341 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~----------~~~~~~-~~l~~~Gv~v~~~~~~-----~~~iRi~~~ 403 (439)
T 3dxv_A 341 KRHPLIGDIRGRGL-ACGMELVCDRQSREPARA----------ETAKLI-YRAYQLGLVVYYVGMN-----GNVLEFTPP 403 (439)
T ss_dssp HHCTTEEEEEEETT-EEEEEEEEETTTTEECHH----------HHHHHH-HHHHHHTEECEEESTT-----SCEEEECCC
T ss_pred HhCCCeEEEEEEEE-EEEEEEecCccccCCCHH----------HHHHHH-HHHHHCCcEEeecCCC-----CCEEEEECC
Confidence 455555555554 45544410 1110 123444 4455679999997533 248999876
Q ss_pred --CCcCcHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++++++++++|+++++++
T Consensus 404 ~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 404 LTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998765
No 135
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.95 E-value=1.1e-26 Score=235.18 Aligned_cols=303 Identities=11% Similarity=0.058 Sum_probs=206.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
++.+++++.+++.... .++. ....++++++++.+.+..| +++|++|+|+++++..+++++. . +
T Consensus 75 ~p~v~~ai~~~~~~~~----~~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~~al~~~~-~~~~~~~~~ 144 (420)
T 2pb2_A 75 HPALVEALKSQGETLW----HTSN-VFTNEPALRLGRKLIDATF----AERVLFMNSGTEANETAFKLAR-HYACVRHSP 144 (420)
T ss_dssp CHHHHHHHHHHHTTCC----CCCT-TSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHH-HHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc----cccC-ccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHHHHHHHHH-HHhhhccCC
Confidence 7889999988887631 1111 1234667777777766644 5899999999999999999886 5 6
Q ss_pred CC-EEEEc---cCcee------cC-------------CCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-c
Q 041151 155 GD-GVVLL---FHTTW------KR-------------QQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG-Q 207 (463)
Q Consensus 155 gd-~Vlvp---~g~~~------~~-------------~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~ 207 (463)
|+ .|+++ +.+.. .. +.. ..|+ +.|++.+++ ++++|+++.++|++| .
T Consensus 145 g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~-~~le~~i~~------~~~~vi~~p~~~~gG~~ 217 (420)
T 2pb2_A 145 FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDL-HAVKAVMDD------HTCAVVVEPIQGEGGVQ 217 (420)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCH-HHHHHHCCT------TEEEEEECSEETTTTSE
T ss_pred CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCH-HHHHHHhcc------CceEEEEeCCcCCCCee
Confidence 74 78875 21111 00 000 1378 999998876 799999888888888 4
Q ss_pred CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 208 CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 208 ~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
+++.+++++|.++|++||+++|+||+|..+.+. +.. ..+... ++ .. .++ ||||++ + +|+|+||++
T Consensus 218 ~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~-g~~-~~~~~~--~~----~~--dii---t~sK~l-~-~G~~iG~~~ 282 (420)
T 2pb2_A 218 AATPEFLKGLRDLCDEHQALLVFDEVQCGMGRT-GDL-FAYMHY--GV----TP--DIL---TSAKAL-G-GGFPVSAML 282 (420)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSS-SHHHHH--TC----CC--SEE---EECGGG-G-TTSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccC-CcH-HHHHhc--CC----CC--CeE---Eecccc-c-CCCceEEEE
Confidence 699999999999999999999999999876542 221 111111 11 22 233 789999 6 899999999
Q ss_pred ecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCc
Q 041151 288 MTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RNV 362 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg~ 362 (463)
+ ++++++.+.... ..+++.+.+.|.++.++|+ ...+ +++.++++++++++.+.|+++ |.+
T Consensus 283 ~---~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 347 (420)
T 2pb2_A 283 T---TQEIASAFHVGSHGSTYGGNPLACAVAGAAFD-----------IINT-PEVLQGIHTKRQQFVQHLQAIDEQFDIF 347 (420)
T ss_dssp E---CHHHHTTCC----CCEECCCHHHHHHHHHHHH-----------HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred E---hHHHHHhhcCCCcCcccCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 5 777777665432 2467788999988888764 1111 345667777788888877654 433
Q ss_pred ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
....+.| .++++.+. ... ..+..+++ ..|.++||.+.|+. .+++||+++ .+++++++++
T Consensus 348 ~~~~~~g-~~~~v~~~--~~~--------~~~~~~l~-~~l~~~Gi~v~~~~-------~~~iRl~~~~~~t~eei~~~~ 408 (420)
T 2pb2_A 348 SDIRGMG-LLIGAELK--PKY--------KGRARDFL-YAGAEAGVMVLNAG-------ADVMRFAPSLVVEEADIHEGM 408 (420)
T ss_dssp EEEEEET-TEEEEEEC--GGG--------TTCHHHHH-HHHHHTTEECEESS-------TTEEEECCCTTCCHHHHHHHH
T ss_pred EEEEecc-eEEEEEEC--CCc--------hHHHHHHH-HHHHHCCCEEEeCC-------CCEEEEECCCCCCHHHHHHHH
Confidence 3344444 45564443 210 00234444 44556899999863 248999976 7899999999
Q ss_pred HHHHHHHHHH
Q 041151 441 ESFKKFNDEF 450 (463)
Q Consensus 441 ~~l~~~l~~~ 450 (463)
++|+++++++
T Consensus 409 ~~l~~~l~~~ 418 (420)
T 2pb2_A 409 QRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 136
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.95 E-value=8.7e-27 Score=236.74 Aligned_cols=319 Identities=9% Similarity=0.025 Sum_probs=206.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+.+.... + ++ ..+..+++.++++.+.+.++ +++++|++|+|+++++..+++.+.. ..++.|++
T Consensus 61 ~p~v~~a~~~~~~~~~---~-~~-~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~ 133 (433)
T 1zod_A 61 HPEIVSVIGEYAGKLD---H-LF-SEMLSRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVG 133 (433)
T ss_dssp CHHHHHHHHHHHHHCC---C-CC-TTCCCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHHhCc---c-cc-cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEE
Confidence 7889999988887621 1 11 12223566666666666555 3578999999999999999986531 23577887
Q ss_pred c---c-C-----------------------cee-cC-C----Ccc--------cChHHHHHHHHHHHHhcCCceeEEEEE
Q 041151 161 L---F-H-----------------------TTW-KR-Q----QIG--------VLIINDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 161 p---~-g-----------------------~~~-~~-~----~~~--------~d~~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
+ + | +.. +. . .++ +|+ +.|++.+++.. ..++++|+ +
T Consensus 134 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~--~~~~~~vi-~ 209 (433)
T 1zod_A 134 FAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAEL-DYAFDLIDRQS--SGNLAAFI-A 209 (433)
T ss_dssp ETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHH-HHHHHHHHHHC--CSCEEEEE-E
T ss_pred ECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHH-HHHHHHHHhcC--CCCeEEEE-E
Confidence 5 2 1 111 11 1 122 357 99999987520 01556654 5
Q ss_pred CC-CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 200 NP-GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 200 ~p-~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
+| +||||. .++.+++++|.++|++||++||+||+|.++.+. +. ...+... +. .. .+.||||+| +
T Consensus 210 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~-g~-~~~~~~~--~~----~~-----di~s~sK~~-~ 275 (433)
T 1zod_A 210 EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GT-MFACQRD--GV----TP-----DILTLSKTL-G 275 (433)
T ss_dssp CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSTHHHH--TC----CC-----SEEEECHHH-H
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcC-ch-HhHHhhc--CC----CC-----CEEEecccc-c
Confidence 66 588995 678899999999999999999999999976442 21 1122111 11 11 234899999 6
Q ss_pred CCCceeEEEEecCCChhHHHHHHhhh--h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 278 ECGQRGGYFEMTNIPPKTVDEIYKIA--S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
. |+|+||++ +++++++.+.... . .+++.+.+.|.++.++++ .... +...++++++++.+.+
T Consensus 276 ~-G~~ig~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~-----------~~~~-~~~~~~~~~~~~~l~~ 339 (433)
T 1zod_A 276 A-GLPLAAIV---TSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLD-----------VVQR-DGLVARANVMGDRLRR 339 (433)
T ss_dssp T-TSSCEEEE---ECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHH
T ss_pred C-CCCeeEEE---EhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHH
Confidence 4 99999999 4888998887632 1 356778999988887763 1111 2345566677777777
Q ss_pred HhhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 355 GFNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 355 ~L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
.|+++ |.+....+.| .|+|+++.-.... ......+...+.. .|.++||.+.||..|+. .+++||+++
T Consensus 340 ~l~~l~~~~~~~~~~~~~g-~~~~i~~~~~~~~----~~~~~~~~~~~~~-~l~~~Gv~v~~~~~~~~---~~~lRi~~~ 410 (433)
T 1zod_A 340 GLLDLMERFDCIGDVRGRG-LLLGVEIVKDRRT----KEPADGLGAKITR-ECMNLGLSMNIVQLPGM---GGVFRIAPP 410 (433)
T ss_dssp HHHHHHHHCTTEEEEEEET-TEEEEEEEEETTT----TEECTTHHHHHHH-HHHHTTEECCEECCTTS---CCEEEECCC
T ss_pred HHHHHHHhCCCeEEEEEEE-EEEEEEEecCccc----cCCChHHHHHHHH-HHHHCCCeEeccCCCCC---CCEEEEECC
Confidence 77653 4444444554 4556554310000 0000001334444 45578999999887762 348999876
Q ss_pred --CCcCcHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++++++++++|+++++++
T Consensus 411 ~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 411 LTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999999988654
No 137
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.95 E-value=3.7e-26 Score=234.09 Aligned_cols=324 Identities=9% Similarity=-0.050 Sum_probs=211.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+++++.+++.+. ...|+...+..+++.++++++.+..+ .+.++|++|+|+++++..+++++. .
T Consensus 69 ~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~~al~~~~-~~~~~~g~~ 142 (460)
T 3gju_A 69 RQKIADAIATQAKNL---AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANETNIKLIW-YYNNVLGRP 142 (460)
T ss_dssp CHHHHHHHHHHHHHH---SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHHHHHHHHH-HHHHhcCCC
Confidence 688999998888762 23455445556788888888876643 466799999999999999999886 4
Q ss_pred CCCEEEEc----cCcee-------------------------c--C----CCcccC--------hHHHHHHHHHHHHhcC
Q 041151 154 EGDGVVLL----FHTTW-------------------------K--R----QQIGVL--------IINDLQQSVAQARSKG 190 (463)
Q Consensus 154 ~gd~Vlvp----~g~~~-------------------------~--~----~~~~~d--------~~~~l~~~l~~~~~~~ 190 (463)
+++.|++. +|... + . ++++.+ + +.|++.++....
T Consensus 143 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~-~~le~~i~~~~~-- 219 (460)
T 3gju_A 143 EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCA-DKLEEMILAEGP-- 219 (460)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHH-HHHHHHHHHHCG--
T ss_pred CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHH-HHHHHHHHhcCC--
Confidence 45788875 22110 0 1 111222 5 888888874211
Q ss_pred CceeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 191 ITVRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 191 ~~~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
.++++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|..+... +. ....... +. .. .+.
T Consensus 220 ~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~-g~-~~~~~~~--~~----~p-----di~ 286 (460)
T 3gju_A 220 ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRL-GT-MFGSDHY--GI----KP-----DLI 286 (460)
T ss_dssp GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SCHHHHH--TC----CC-----SEE
T ss_pred CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc-cc-cchHhhc--CC----CC-----Cee
Confidence 15677766666777776 778888999999999999999999999976442 21 1112111 11 11 234
Q ss_pred cCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh-------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041151 270 TVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340 (463)
Q Consensus 270 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (463)
+|||++ + .| +|+||++ +++++++.+... . ..+++.+++.|.++.++|+. ... ....+.
T Consensus 287 t~sK~l-~-gG~~~lg~v~---~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-------~~~-~~~~~~ 353 (460)
T 3gju_A 287 TIAKGL-T-SAYAPLSGVI---VADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLEL-------IDE-MDLVTN 353 (460)
T ss_dssp EECGGG-T-TTSSCCEEEE---EEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHH-------HHH-TTHHHH
T ss_pred eeehhh-c-CCCCCeEEEE---ECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHH-------HHh-ccHHHH
Confidence 789999 5 35 8999999 589999998632 2 24678899999999888741 100 111233
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC---ChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV---PDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 341 ~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
.++..+..++.|.+.+.++|++....+.|.++ ++.+.-... ....+. .....+...|.++||.+.|+.
T Consensus 354 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--- 424 (460)
T 3gju_A 354 AGETGAYFRAELAKAVGGHKNVGEVRGDGMLA-AVEFVADKD-----DRVFFDASQKIGPQVATALAASGVIGRAMP--- 424 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEEEEEETTEE-EEEECSBTT-----TTBCCCGGGCHHHHHHHHHHHTTEECEECS---
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEE-EEEEccCcc-----ccccccchHHHHHHHHHHHHHCCeEEecCC---
Confidence 44444555556666666666666666666554 433321100 000000 012234455667899999965
Q ss_pred CCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 418 ~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..+++||++. .+++++++++++|+++++++.+
T Consensus 425 ---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 425 ---QGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp ---SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1248999965 7889999999999999987653
No 138
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.95 E-value=3.1e-27 Score=233.68 Aligned_cols=298 Identities=12% Similarity=0.101 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHhhhcC-CCCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCc-HHHHHHHHHHHhcCC--
Q 041151 82 PADAIARAKHYLSLTS-GGLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGA-SKGVMQTLNCVIRGE-- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~-~~al~~~~~~l~~~~-- 154 (463)
|+.+++++.+.+.... .....|.. ..+..++.+++.+++.+.+|.+ ++++|++|+|+ ++++..++.+++ .+
T Consensus 15 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~al~~~~~~l~-~~~~ 92 (360)
T 1w23_A 15 PKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTMLPMNLL-TKGT 92 (360)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHC-CTTC
T ss_pred CHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHHHHHHHHHhc-CCCC
Confidence 8899999988775420 01122222 2233344555555555555653 46799999999 999999999997 55
Q ss_pred -CCEEEEc------------cCcee---cCC--CcccChHHHHHH-HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 155 -GDGVVLL------------FHTTW---KRQ--QIGVLIINDLQQ-SVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 155 -gd~Vlvp------------~g~~~---~~~--~~~~d~~~~l~~-~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
||.|+++ .| ++ +.+ .+.+|+ ++|++ ++++ ++|+|++++|+||||.+++ +
T Consensus 93 ~g~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~d~-~~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~-- 160 (360)
T 1w23_A 93 IGNYVLTGSWSEKALKEAKLLG-ETHIAASTKANSYQSI-PDFSEFQLNE------NDAYLHITSNNTIYGTQYQ--N-- 160 (360)
T ss_dssp EEEEEECSHHHHHHHHHHHTTS-EEEEEEECGGGTSCSC-CCGGGCCCCT------TEEEEEEESEETTTTEECS--S--
T ss_pred cccEEEecchhHHHHHHHHHhC-CeEEeecccccCcCCc-cchHhhccCC------CCCEEEEeCCCCCcceecc--c--
Confidence 5667776 56 66 221 233788 88888 7755 7999999999999999987 2
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+++++|++||+|++|+.+.. ..++. .. .++++|+||++ |++| +||+++ ++++
T Consensus 161 ----i~~~~~~~li~D~a~~~~~~-----~~~~~-----------~~--di~~~s~sK~~-~~~G--~G~~~~---~~~~ 212 (360)
T 1w23_A 161 ----FPEINHAPLIADMSSDILSR-----PLKVN-----------QF--GMIYAGAQKNL-GPSG--VTVVIV---KKDL 212 (360)
T ss_dssp ----CCCCCSSCEEEECTTTTTSS-----CCCGG-----------GC--SEEEEETTTTT-SCTT--CEEEEE---EHHH
T ss_pred ----ccccCCceEEEechhhcCCC-----CcCcc-----------cC--CEEEEEccccc-CCCC--cEEEEE---cHHH
Confidence 33489999999999986432 11221 11 27899999998 7777 899995 7777
Q ss_pred HHHHHhhhh------------h-cccCChHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCC
Q 041151 296 VDEIYKIAS------------I-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 296 ~~~l~~~~~------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
++.+..... . ..+++...+.++..+++ .... ..++++++++++++++.+.|++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 282 (360)
T 1w23_A 213 LNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLD----------WIKDLGGAEAIAKQNEEKAKIIYDTIDESN 282 (360)
T ss_dssp HCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 665544321 1 12345555556655542 1112 356688889999999999999886
Q ss_pred Cc-ccc-cC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 361 NV-VCN-FT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 361 g~-~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
++ ... .+ .+++++|+.+ +... +..+++ +.|.++||.+.+|..+ .+++||+++ .+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~-~~l~~~gi~~~~~~~~-----~~~iRis~~~~~~~~ 344 (360)
T 1w23_A 283 GFYVGHAEKGSRSLMNVTFNL--RNEE----------LNQQFL-AKAKEQGFVGLNGHRS-----VGGCRASIYNAVPID 344 (360)
T ss_dssp TSSEESSCGGGBCSSEEEEEC--SSHH----------HHHHHH-HHHHHTTEESCBCCTT-----TCSEEEECCTTSCHH
T ss_pred CcccccCCchhccCcEEEEEc--CCCc----------cHHHHH-HHHHHCCeeeecCCCC-----CCeEEEEecCCCCHH
Confidence 55 433 23 3566788554 3321 123444 4467789999998754 247999999 6889
Q ss_pred cHHHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFNDE 449 (463)
Q Consensus 435 ~i~~~~~~l~~~l~~ 449 (463)
++++++++|++++++
T Consensus 345 ~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 345 ACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887653
No 139
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.95 E-value=5.3e-27 Score=235.86 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=218.0
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
++++||+.|.|.. ++.+++++.+.+.. ..|.+..+..++|++++
T Consensus 30 ~~~id~~~~~~~~-------------------------------~~~v~~a~~~~~~~-----~~y~~~~~~~~l~~~la 73 (399)
T 2oga_A 30 VPFLDLKAAYEEL-------------------------------RAETDAAIARVLDS-----GRYLLGPELEGFEAEFA 73 (399)
T ss_dssp BCSCCHHHHHHHT-------------------------------HHHHHHHHHHHHHH-----TCCSSSHHHHHHHHHHH
T ss_pred CcccccCcCCCCC-------------------------------CHHHHHHHHHHHhc-----CCCCCchhHHHHHHHHH
Confidence 4688999888775 67888888887765 25666677889999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc-------------cCcee---c--CCCcccChHHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVLL-------------FHTTW---K--RQQIGVLIIND 178 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp-------------~g~~~---~--~~~~~~d~~~~ 178 (463)
++++ . +++++++|+++++..++.++ + ++||+|+++ .|.++ + .+.+.+|+ +.
T Consensus 74 ~~~~------~--~~~v~~~~Gt~a~~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~ 143 (399)
T 2oga_A 74 AYCE------T--DHAVGVNSGMDALQLALRGLGI-GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDP-LL 143 (399)
T ss_dssp HHTT------S--SEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCH-HH
T ss_pred HHHC------C--CeEEEecCHHHHHHHHHHHhCC-CCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCH-HH
Confidence 9975 2 35677777799999999998 7 899999997 56665 2 22578999 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
|++.+++ ++++|+ |+||||.+.+ +++|.++|+++|++||+||+|+.+...+.. .+. .+
T Consensus 144 l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~----~~--- 201 (399)
T 2oga_A 144 VEKAITP------RTRALL---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGR---RIG----AG--- 201 (399)
T ss_dssp HHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTE---ETT----CT---
T ss_pred HHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCe---ecc----cc---
Confidence 9999876 788877 6789999977 778888899999999999999865321111 110 01
Q ss_pred CCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHHhhhhhc-------------ccCChHHHHHHHHhcCC
Q 041151 259 FSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIA-------------LSPNVPAQIFMGLMVNP 323 (463)
Q Consensus 259 ~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~q~~~~~~l~~ 323 (463)
. .+++.|+ ||.+ |.+| |+||++. .++++++.+....... +..+.+.+.++.+.++
T Consensus 202 -~----di~~~S~~~sK~~-~~~G-~~g~~~~--~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~- 271 (399)
T 2oga_A 202 -S----SVAAFSFYPGKNL-GCFG-DGGAVVT--GDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA- 271 (399)
T ss_dssp -T----CEEEEECCTTSSS-CCSS-CCEEEEE--SCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-
T ss_pred -c----CEEEEeCCCCccC-CcCC-ceEEEEe--CCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-
Confidence 1 3788898 7999 8779 9999985 3588888887654311 2334555555544432
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
..+...++.+++.+++.+.|+++||+.+. .++++.++|+.+.++. .+..+ +...
T Consensus 272 -------------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-l~~~ 326 (399)
T 2oga_A 272 -------------HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-----------ERRDE-LRSH 326 (399)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-----------SSHHH-HHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC-----------CCHHH-HHHH
Confidence 12234455666778899999988888764 3556666653333211 12334 4455
Q ss_pred HHhcCeEeeCCCCCC-----------CC----C-----CCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 403 LEATGISTVPGSGFG-----------QK----E-----GIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 403 l~~~gI~v~pg~~f~-----------~~----~-----~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
|.++||.+.++.... .. + ..+++||++. .+++|+++++++|+++++++
T Consensus 327 L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 327 LDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp HHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 677899998753210 00 0 0257999998 78999999999999887643
No 140
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.95 E-value=7.1e-26 Score=233.19 Aligned_cols=347 Identities=11% Similarity=0.040 Sum_probs=233.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++++++....++.+..+.....+ .++.|+|..|.+.. |+.+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~L~a~e~~~-------------------------------~~~V~eA~ 64 (483)
T 1rv3_A 20 MLAQPLKDSDAEVYDIIKKESNR----QRVGLELIASENFA-------------------------------SRAVLEAL 64 (483)
T ss_dssp HTTSCHHHHCHHHHHHHHHHHHH----HHSSEECCTTCCCC-------------------------------CHHHHHHH
T ss_pred HHhhhhhhcCHHHHHHHHHHHHH----hhcCeEEEcCCCCC-------------------------------CHHHHHHH
Confidence 45556666666655444333221 24689998775442 88999999
Q ss_pred HHHhhhcCC----CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC--CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 90 KHYLSLTSG----GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 90 ~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
.+.+.+... ....|+...+..++++.+.+++.+.+|.+.+. .+|++++|+ +++..++.+++ +|||+|+++
T Consensus 65 ~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all-~pGD~Vl~~~~ 142 (483)
T 1rv3_A 65 GSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALV-EPHGRIMGLDL 142 (483)
T ss_dssp TSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHT-CTTCEEEEECG
T ss_pred HHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhc-CCCCEEEEecC
Confidence 887765210 01123333345678888888888888865322 358889988 88888899998 999999997
Q ss_pred -c-------------Cce-------e-c---C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 162 -F-------------HTT-------W-K---R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 162 -~-------------g~~-------~-~---~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
+ ++. + + + ..+.+|+ +.|++.+++. ++|+|++ +++||+ .+++ ++
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~-d~le~~i~~~-----~tklIi~-~~sn~~-~~~d---l~ 211 (483)
T 1rv3_A 143 PDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY-DRLEENARLF-----HPKLIIA-GTSCYS-RNLD---YG 211 (483)
T ss_dssp GGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCH-HHHHHHHHHH-----CCSEEEE-CCSSCC-SCCC---HH
T ss_pred ccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCH-HHHHHHHhhc-----CCcEEEE-eCCcCC-CcCC---HH
Confidence 1 122 1 1 2 4578999 9999999843 8999999 999998 7777 77
Q ss_pred HHHHHhhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-
Q 041151 216 EILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP- 293 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~- 293 (463)
+|.++|+++|++||+|++|.. +.+ .+....++. . ..|++.|+||+| +|+|+||+++ ++
T Consensus 212 ~i~~ia~~~g~~livD~ah~~g~~~-~~~~~~p~~----~---------~div~~s~~K~l---~GprgG~i~~---~~~ 271 (483)
T 1rv3_A 212 RLRKIADENGAYLMADMAHISGLVV-AGVVPSPFE----H---------CHVVTTTTHKTL---RGCRAGMIFY---RRG 271 (483)
T ss_dssp HHHHHHHHTTCEEEEECTTTHHHHH-HTSSCCGGG----T---------CSEEEEESSGGG---CCCSCEEEEE---ECS
T ss_pred HHHHHHHHcCCEEEEEccchhcccc-cCCCCCCCC----C---------CcEEEecCcccC---CCCCceEEEE---cch
Confidence 888889999999999999863 222 121111111 1 137889999988 4889999996 33
Q ss_pred --------------hHHHHHHhhh-h-hcccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 041151 294 --------------KTVDEIYKIA-S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 294 --------------~~~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L 356 (463)
++.+.+.... . ...+++.....++..+++ ... .+.+..++++.++++++.+.|
T Consensus 272 ~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~----------~~~~~~~~~~~~~~~~~~~~l~~~L 341 (483)
T 1rv3_A 272 VRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK----------QAMTPEFKEYQRQVVANCRALSAAL 341 (483)
T ss_dssp BCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHH----------HHhChhHHHHHHHHHHHHHHHHHHH
Confidence 2344443322 2 122333333444444442 111 234567888999999999999
Q ss_pred hcCCCcccccCC-ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEEEEec-
Q 041151 357 NSCRNVVCNFTE-GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 357 ~~~pg~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lRis~~- 430 (463)
.+. |+.+..+. +++++|+++... + . +...+..+|.+.||.+. ||..+.. +.+++||+++
T Consensus 342 ~~~-g~~~~~~~~~~~~~~v~~~~~-g---------~--~~~~~~~~L~~~gI~v~~~~~pg~~~~~--~~~~iRis~~~ 406 (483)
T 1rv3_A 342 VEL-GYKIVTGGSDNHLILVDLRSK-G---------T--DGGRAEKVLEACSIACNKNTCPGDKSAL--RPSGLRLGTPA 406 (483)
T ss_dssp HHT-TCEEGGGSCSSSEEEEEGGGG-T---------C--CHHHHHHHHHHTTEECEEECCSSCSCTT--SCCEEEEECHH
T ss_pred Hhc-CCEeccCCCCCceEEEeccCC-C---------C--CHHHHHHHHHhCCcEEecCCCCCCCcCC--CCceEEeecCC
Confidence 988 88887653 457788776521 1 1 23335677889999999 8874322 3358999999
Q ss_pred -CC----cCcHHHHHHHHHHHHHH
Q 041151 431 -PA----EEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 -~~----~e~i~~~~~~l~~~l~~ 449 (463)
++ ++|+++++++|+++++.
T Consensus 407 ~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 407 LTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHh
Confidence 45 89999999999999876
No 141
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=1.3e-26 Score=231.90 Aligned_cols=302 Identities=11% Similarity=0.092 Sum_probs=207.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++.+++++.+.+.. ....|.+..+..++|++++++++ . .++|++|+| ++++..++.++ + ++||+|++
T Consensus 16 ~~~~~~a~~~~l~~---~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG-t~al~~~l~~l~~-~~gd~Vi~ 83 (388)
T 1b9h_A 16 DDAERNGLVRALEQ---GQWWRMGGDEVNSFEREFAAHHG------A-AHALAVTNG-THALELALQVMGV-GPGTEVIV 83 (388)
T ss_dssp CHHHHHHHHHHHHT---SCCBTTTCSHHHHHHHHHHHHTT------C-SEEEEESCH-HHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHHc---CCeeecCCHHHHHHHHHHHHHhC------C-CeEEEeCCH-HHHHHHHHHHcCC-CCcCEEEE
Confidence 58899999988876 22356666788999999999985 2 267888877 89999999999 7 89999999
Q ss_pred c-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ + .+.+.+|+ +.|++.+++ ++++|+ |+||||.+.+ +++|.++|+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~ 150 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLGAVTVPVDVDAATYNLDP-EAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISA 150 (388)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCH-HHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCCcCCCCH-HHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHH
Confidence 7 56665 2 23478999 999999876 788877 9999999976 677888888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh-H--HHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK-T--VDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~-~--~~~l 299 (463)
++|++||+|++|+.+....+. .+. .+ . +|++.||||.. +++|.|+||++. +++ + ++.+
T Consensus 151 ~~~~~li~D~a~~~g~~~~~~---~~~----~~----~----~i~~~S~s~~K-~l~g~~~G~~~~---~~~~~~~~~~~ 211 (388)
T 1b9h_A 151 DTGVPLLQDAAHAHGARWQGK---RVG----EL----D----SIATFSFQNGK-LMTAGEGGAVVF---PDGETEKYETA 211 (388)
T ss_dssp HHTCCBCEECTTCTTCEETTE---EGG----GS----S----SCEEEECCTTS-SSCSSSCEEEEE---CTTCHHHHHHH
T ss_pred HcCCEEEEecchhcCCccCCe---ecc----cc----c----ceEEEEccCCC-cccCCCeEEEEE---CCHHHHHHHHH
Confidence 999999999999863221111 121 11 1 47889999766 567789999995 544 5 5666
Q ss_pred Hhhhhhc------------ccCC-hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 041151 300 YKIASIA------------LSPN-VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF 366 (463)
Q Consensus 300 ~~~~~~~------------~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~ 366 (463)
....... .+.+ .+.+..++.++. .++++++.+++++++++++.+.|+++||+.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~-----------~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 280 (388)
T 1b9h_A 212 FLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRA-----------QLARLDEQIAVRDERWTLLSRLLGAIDGVVPQG 280 (388)
T ss_dssp HHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHH-----------HHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECC
T ss_pred HHHHhCCCCccCccceeecccccCCcCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 5433210 0111 122222222211 123344567778889999999999988887765
Q ss_pred ------CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC----------CCC----------
Q 041151 367 ------TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG----------QKE---------- 420 (463)
Q Consensus 367 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~----------~~~---------- 420 (463)
+.+++++|+.++-.... +..++ ...|.++||.++++.... .+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l-~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (388)
T 1b9h_A 281 GDVRADRNSHYMAMFRIPGLTEE----------RRNAL-VDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRC 349 (388)
T ss_dssp CCTTCCBCCCSEEEEECTTCCHH----------HHHHH-HHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTC
T ss_pred CCcCCCccceEEEEEEeCCcCcc----------cHHHH-HHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCC
Confidence 35578888655411000 12344 445667899998865321 000
Q ss_pred ------CCcEEEEEec--C-CcCcHHHHHHHHHHHHHH
Q 041151 421 ------GIFHLRTTIL--P-AEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 421 ------~~~~lRis~~--~-~~e~i~~~~~~l~~~l~~ 449 (463)
..+.+||++. . +++|++.+++.|++++++
T Consensus 350 ~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 350 PNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0236999998 6 889999999999988754
No 142
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.95 E-value=1.5e-26 Score=234.77 Aligned_cols=304 Identities=11% Similarity=0.096 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHhhhcCCC-CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cC----C
Q 041151 82 PADAIARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RG----E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~----~ 154 (463)
++.+++++.+++...... ...|+.. ...++++.+++++ + +++++|++|+|+++++..+++++. .+ |
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~la~~~----~--~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~ 133 (429)
T 1s0a_A 61 HPQLNAAMKSQIDAMSHVMFGGITHA-PAIELCRKLVAMT----P--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA 133 (429)
T ss_dssp CHHHHHHHHHHHHHCSCCCCSSEECH-HHHHHHHHHHHHS----C--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcccccccccCCH-HHHHHHHHHHHhC----C--CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC
Confidence 789999999888763111 1233321 1234555555554 3 478899999999999999998653 12 6
Q ss_pred CCEEEEc----cC-------------------------cee-cC------CCc-ccChHHHHHHHHHHHHhcCCceeEEE
Q 041151 155 GDGVVLL----FH-------------------------TTW-KR------QQI-GVLIINDLQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 155 gd~Vlvp----~g-------------------------~~~-~~------~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~ 197 (463)
|+.|+++ ++ ... +. ..+ .+|+ +.|++.+++. ..++++|
T Consensus 134 ~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v- 208 (429)
T 1s0a_A 134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM-VGFARLMAAH---RHEIAAV- 208 (429)
T ss_dssp CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG-HHHHHHHHHH---TTTEEEE-
T ss_pred CCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH-HHHHHHHHhC---CCCEEEE-
Confidence 8988886 11 111 11 123 4788 9999998742 1145555
Q ss_pred EECC--CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcc
Q 041151 198 IINP--GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274 (463)
Q Consensus 198 l~~p--~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 274 (463)
+++| |||||. ..+.+++++|.++|++||+++|+||+|.++... +. ...+... +. .. . +.||||+
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~-g~-~~~~~~~--~~----~~--d---~~t~sK~ 275 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT-GK-LFACEHA--EI----AP--D---ILCLGKA 275 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGGG--TC----CC--S---EEEECGG
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCccc-ch-HHHhhhc--CC----CC--C---EEEeccc
Confidence 5556 699995 667888999999999999999999999876441 21 1111111 11 11 2 2379999
Q ss_pred cCCCCC-ceeEEEEecCCChhHHHHHHhh------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 041151 275 YWGECG-QRGGYFEMTNIPPKTVDEIYKI------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRR 347 (463)
Q Consensus 275 ~~g~~G-~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (463)
+ + +| +|+||++ +++++++.+... ...+++.+.+.|.++.++++ ...+ +...+++++
T Consensus 276 l-~-~G~~~iG~~~---~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~-----------~~~~-~~~~~~~~~ 338 (429)
T 1s0a_A 276 L-T-GGTMTLSATL---TTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA-----------ILES-GDWQQQVAD 338 (429)
T ss_dssp G-G-TSSSCCEEEE---ECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH-----------HHHT-CHHHHHHHH
T ss_pred c-c-CCCccceEEE---eCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHH
Confidence 9 5 58 9999999 488888888763 22356778999988888763 1111 235566777
Q ss_pred HHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcE
Q 041151 348 RARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFH 424 (463)
Q Consensus 348 ~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~ 424 (463)
+++++.+.|+++ |++....+.| .++|+++.-+. +..++... |.++||.+.|+ + ++
T Consensus 339 ~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~~~~~~~~------------~~~~l~~~-l~~~Gi~v~~~---~-----~~ 396 (429)
T 1s0a_A 339 IEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHPV------------NMAALQKF-FVEQGVWIRPF---G-----KL 396 (429)
T ss_dssp HHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCB------------CHHHHHHH-HHHTTEECCCB---T-----TE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEee-EEEEEEECCcc------------cHHHHHHH-HHHCCCEEecc---C-----CE
Confidence 888888888774 5555445555 46775553211 23444444 55789999883 1 37
Q ss_pred EEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 425 LRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 425 lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
+||+++ .+++++++++++|++++++
T Consensus 397 iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 397 IYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999965 8899999999999988654
No 143
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.95 E-value=5.3e-26 Score=232.86 Aligned_cols=321 Identities=13% Similarity=0.105 Sum_probs=207.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+++++.+++... ...|+...+..+++.++++++.+.++ .+.++|++|+|+++++..+++++. +
T Consensus 68 ~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~~al~~~~-~~~~~~g~~ 141 (459)
T 4a6r_A 68 RKDFAEAARRQMEEL---PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVDTMIRMVR-RYWDVQGKP 141 (459)
T ss_dssp CHHHHHHHHHHHHHC---SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHH-HHHHhcCCC
Confidence 789999999988762 22454445556788888888877654 456799999999999999999986 5
Q ss_pred CCCEEEEc----cCcee-------------------------c--C----CCcccC--------hHHHHHHHHHHHHhcC
Q 041151 154 EGDGVVLL----FHTTW-------------------------K--R----QQIGVL--------IINDLQQSVAQARSKG 190 (463)
Q Consensus 154 ~gd~Vlvp----~g~~~-------------------------~--~----~~~~~d--------~~~~l~~~l~~~~~~~ 190 (463)
+++.|++. +|... + . ..+ .| + +.|++.+.....
T Consensus 142 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~-~~le~~i~~~~~-- 217 (459)
T 4a6r_A 142 EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAA-RWLEEKILEIGA-- 217 (459)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHH-HHHHHHHHHHCG--
T ss_pred CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHH-HHHHHHHHHcCC--
Confidence 46888875 22111 0 0 111 23 6 888888874211
Q ss_pred CceeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 191 ITVRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 191 ~~~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
.++++|+++.++|++|. .++.+.+++|.++|++||+++|+||+|..+... +. ....... +. .. . +.
T Consensus 218 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~-G~-~~~~~~~--~~----~p--d---i~ 284 (459)
T 4a6r_A 218 DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT-GE-WFGHQHF--GF----QP--D---LF 284 (459)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSHHHHH--TC----CC--S---EE
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc-cc-cchHhhc--CC----CC--C---ee
Confidence 04555544444455554 558999999999999999999999999986542 22 1112111 11 11 1 34
Q ss_pred cCCcccCCCCCceeEEEEecCCChhHHHHHH---hhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 041151 270 TVSKGYWGECGQRGGYFEMTNIPPKTVDEIY---KIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345 (463)
Q Consensus 270 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~---~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
+|||++ +.+|+|+||++ +++++++.+. ... ..+++.++++|.++.++|+ .... +.+.+++
T Consensus 285 t~sK~l-~gg~~~lg~v~---~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~ 348 (459)
T 4a6r_A 285 TAAKGL-SSGYLPIGAVF---VGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVA-----------ALRD-EGIVQRV 348 (459)
T ss_dssp EECGGG-GTTSSCCEEEE---ECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHH-----------HHHH-TCHHHHH
T ss_pred ehhhhh-cCCCCCcccee---eCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHH-----------HHhc-chHHHHH
Confidence 789999 54559999999 5999999987 333 2578889999999988874 1111 1233333
Q ss_pred H-HH----HHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCCC
Q 041151 346 R-RR----ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 346 ~-~~----~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
+ ++ ++.|.+.|.++|++....+.|.|+.+ .+.-... +...+.+ ....+...|.++||.++|+.
T Consensus 349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--- 419 (459)
T 4a6r_A 349 KDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAF-TLVKNKA-----KRELFPDFGEIGTLCRDIFFRNNLIMRACG--- 419 (459)
T ss_dssp HHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEE-EECSBTT-----TTBCCSSTTHHHHHHHHHHHHTTEECEEET---
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEE-EEecCcc-----ccccccchHHHHHHHHHHHHHCCeEEecCC---
Confidence 3 33 34444445555666666666665443 3321100 0000000 12233455667799999952
Q ss_pred CCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 418 QKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 418 ~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
+++||+++ .+++++++++++|+++++++.++.+
T Consensus 420 -----~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~~ 454 (459)
T 4a6r_A 420 -----DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTLK 454 (459)
T ss_dssp -----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999965 7999999999999999998876544
No 144
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.95 E-value=2.5e-26 Score=234.72 Aligned_cols=318 Identities=10% Similarity=0.040 Sum_probs=205.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc----C---C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR----G---E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~---~ 154 (463)
|+.+++++.+++... .+....+..+++.++++++.+.++. ..+ |++|+|+++++..+++.+.. . +
T Consensus 67 ~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~ 138 (452)
T 3n5m_A 67 RKELAEAAYKQLQTL-----SYFPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSEANETAFKIARQYYAQKGEPH 138 (452)
T ss_dssp CHHHHHHHHHHHTTC-----CCCCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHHhc-----CCcccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 789999999888762 1122334557777777777666553 334 99999999999999998751 2 6
Q ss_pred CCEEEEc----cCcee-------------------------cC-C--Cccc-C---------hHHHHHHHHHHHHhcCCc
Q 041151 155 GDGVVLL----FHTTW-------------------------KR-Q--QIGV-L---------IINDLQQSVAQARSKGIT 192 (463)
Q Consensus 155 gd~Vlvp----~g~~~-------------------------~~-~--~~~~-d---------~~~~l~~~l~~~~~~~~~ 192 (463)
++.|++. +|... +. . .... | + +.|++.++.... .+
T Consensus 139 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~le~~l~~~~~--~~ 215 (452)
T 3n5m_A 139 RYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV-KEVDRVMTWELS--ET 215 (452)
T ss_dssp CCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH-HHHHHHHHHHCG--GG
T ss_pred CCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH-HHHHHHHHhcCC--CC
Confidence 7888886 22111 00 0 0000 1 6 999999872110 16
Q ss_pred eeEEEEECC-CCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIINP-GNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~p-~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+++|+++.+ +| ||.++ +.+.+++|.++|++||+++|+||+|..+... +.. .... .+ + ....+.|
T Consensus 216 ~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~-g~~-~~~~----~~----~---~~~di~t 281 (452)
T 3n5m_A 216 IAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT-GKA-FGFM----NY----D---VKPDIIT 281 (452)
T ss_dssp EEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSS-SGGG----GT----T---CCCSEEE
T ss_pred EEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc-ccc-chhh----hc----C---CCCCEEe
Confidence 777777777 89 99766 8888999999999999999999999986542 221 1111 11 1 1122347
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHh---h----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYK---I----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~---~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
|||++ +. | +|+||++ +++++++.+.+ . ...+++.+++.+.++.++|+ ..+. +.+.
T Consensus 282 ~sK~l-~~-G~~~ig~~~---~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~ 344 (452)
T 3n5m_A 282 MAKGI-TS-AYLPLSATA---VKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLE-----------IIEN-ENLI 344 (452)
T ss_dssp ECGGG-GT-TSSCCEEEE---EEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHH
T ss_pred ecccc-cC-CCcceEEEE---ECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHH-----------HHHh-ccHH
Confidence 99999 65 9 9999999 58889888843 1 22467889999999888874 1111 2334
Q ss_pred HHHHHHHHHHHHHhh----cCCCcccccCCceeEEeeecc-CChhhHHHHhhcCCC-ChHHHHHHHHHhcCeEeeCCCCC
Q 041151 343 ESLRRRARMMTDGFN----SCRNVVCNFTEGAMYSFPQIR-LPPKAIEAAKRAGKV-PDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~----~~pg~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
++++++.+.+.+.|. ++|++....+.|.++ ++.+. ..... .... .....+...|.++||.+.|+..|
T Consensus 345 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~-~i~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 417 (452)
T 3n5m_A 345 ERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLV-GIELVNDKETK------EPIDNDKIASVVNACKEKGLIIGRNGMT 417 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCE-EEEEEEETTTT------EECCHHHHHHHHHHHHHTTEECEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEE-EEEEecCCccc------CCCCHHHHHHHHHHHHHCCcEEeecCcc
Confidence 445555555555554 445555556666554 43331 00000 0000 01122345566789999999877
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.. ...+++||+++ .+++++++++++|++++++
T Consensus 418 ~~-~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 418 TA-GYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp ST-TCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 53 34568999866 7899999999999988753
No 145
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.95 E-value=1.1e-26 Score=233.16 Aligned_cols=301 Identities=13% Similarity=0.130 Sum_probs=200.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+++++.+.+... .+.| ..+..++++++++++.+.+| +++|++|+|+++++..++..+.. .++
T Consensus 54 ~p~v~~a~~~~~~~~---~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~ 124 (395)
T 3nx3_A 54 HAKFNAKIKAQVDKL---LHTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESIEGAMKTARKYAFNKGVKG 124 (395)
T ss_dssp CHHHHHHHHHHHTTC---SCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHhc---cccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 789999999888762 2222 22334666777777766644 68999999999999999988751 246
Q ss_pred CEEEEc----cCcee----------------c-CCCcc----cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-C
Q 041151 156 DGVVLL----FHTTW----------------K-RQQIG----VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-L 209 (463)
Q Consensus 156 d~Vlvp----~g~~~----------------~-~~~~~----~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~ 209 (463)
+.|+++ +|... + ..+.. .|+ ++|++++++ ++++|+++.++|++|.+ +
T Consensus 125 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~~~~G~~~~ 197 (395)
T 3nx3_A 125 GQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDI-SSVEKLVNE------KTCAIILESVQGEGGINPA 197 (395)
T ss_dssp CEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCH-HHHHTTCCT------TEEEEEEESEECTTSCEEC
T ss_pred CEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCH-HHHHHhccC------CeEEEEEeCccCCCCcccC
Confidence 888885 22211 0 00111 178 999998875 78999888777777766 7
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+.+++++|.++|++||+++|+||+|.++... +.. .... .+ + ....+.||||++ + +|+|+||++
T Consensus 198 ~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~-g~~-~~~~----~~----~---~~~d~~t~sK~~-~-~G~~~G~~~-- 260 (395)
T 3nx3_A 198 NKDFYKALRKLCDEKDILLIADEIQCGMGRS-GKF-FAYE----HA----Q---ILPDIMTSAKAL-G-CGLSVGAFV-- 260 (395)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSS-SGGG----GG----T---CCCSEEEECGGG-T-TTSCCEEEE--
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecccCCCcC-Ccc-hhHH----hc----C---CCCCEEEecccc-c-CCCceEEEE--
Confidence 8888999999999999999999999976442 111 1111 11 1 112345899999 6 499999999
Q ss_pred CCChhH-HHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCCcc
Q 041151 290 NIPPKT-VDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG----FNSCRNVV 363 (463)
Q Consensus 290 ~~~~~~-~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~~pg~~ 363 (463)
+++++ ++.+..... .+++.+.+.+.++.++++. .. .+...++.+++.+.+.+. +..+|.+.
T Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~-----------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (395)
T 3nx3_A 261 -INQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEI-----------FK-EEKILENVNKLTPYLEQSLDELINEFDFCK 327 (395)
T ss_dssp -ECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHH-----------HH-HTTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred -EchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHH-----------HH-hhHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 48888 788766543 5678899999998888641 11 012233333443444433 33455454
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
...+.| .++|+.+. .. .+...+ ...|.++||.+.|+. .+++||+++ .++++++++++
T Consensus 328 ~~~~~g-~~~~~~~~--~~----------~~~~~~-~~~l~~~Gi~v~~~~-------~~~iRi~~~~~~t~e~i~~~l~ 386 (395)
T 3nx3_A 328 KRKGLG-FMQGLSLD--KS----------VKVAKV-IQKCQENALLLISCG-------ENDLRFLPPLILQKEHIDEMSE 386 (395)
T ss_dssp EEEEET-TEEEEEEC--TT----------SCHHHH-HHHHHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHH
T ss_pred EEEeEE-EEEEEEeC--Cc----------chHHHH-HHHHHHCCCEEecCC-------CCEEEEECCCCCCHHHHHHHHH
Confidence 444444 45564443 21 123444 455667899999863 348999876 78899999999
Q ss_pred HHHHHHHH
Q 041151 442 SFKKFNDE 449 (463)
Q Consensus 442 ~l~~~l~~ 449 (463)
+|++++++
T Consensus 387 ~l~~~l~~ 394 (395)
T 3nx3_A 387 KLRKALKS 394 (395)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998763
No 146
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.94 E-value=6e-26 Score=229.98 Aligned_cols=302 Identities=12% Similarity=0.064 Sum_probs=207.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC-CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD-SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
|+.+++++.+.+.. ..|++ ..+..++|++++++++ .++|++|+|+++++..++.++ .+||+|++
T Consensus 31 p~~~~~a~~~~~~~-----~~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l--~~gd~Vlv 95 (424)
T 2po3_A 31 RARLYERLDRALDS-----QWLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAA--GLTGEVIM 95 (424)
T ss_dssp HHHHHHHHHHHHHH-----TCCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHH--TCCSEEEE
T ss_pred hHHHHHHHHHHHhc-----CCcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHc--CCCCEEEE
Confidence 78899998888765 24776 6788999999999985 258999999999999999998 37899999
Q ss_pred c-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ + .+++.+|+ +.|++.+++ ++++|++++ |||...+ +++|+++|+
T Consensus 96 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~---~tG~~~~---l~~i~~la~ 162 (424)
T 2po3_A 96 PSMTFAATPHALRWIGLTPVFADIDPDTGNLDP-DQVAAAVTP------RTSAVVGVH---LWGRPCA---ADQLRKVAD 162 (424)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCH-HHHGGGCCT------TEEEEEEEC---GGGCCCC---HHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCCcCCcCH-HHHHHhhCc------CCcEEEEEC---CCCCcCC---HHHHHHHHH
Confidence 7 56665 2 23677899 999998876 799998864 8998754 788888999
Q ss_pred hCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC-hhHHHHHH
Q 041151 223 QENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-PKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~ 300 (463)
++|++||+||+|+. +.+ ++. ++.. .. . |++.||||.. +++|+|+||++. + +++++.+.
T Consensus 163 ~~~~~li~Dea~~~g~~~-~~~---~~~~---------~~--d-i~~~S~sk~K-~l~~~~~G~~v~---~~~~l~~~l~ 222 (424)
T 2po3_A 163 EHGLRLYFDAAHALGCAV-DGR---PAGS---------LG--D-AEVFSFHATK-AVNAFEGGAVVT---DDADLAARIR 222 (424)
T ss_dssp HTTCEEEEECTTCTTCEE-TTE---ETTS---------SS--S-EEEEECCTTS-SSCCSSCEEEEE---SCHHHHHHHH
T ss_pred HcCCEEEEECccccCCeE-CCe---eccc---------cc--C-EEEEeCCCCC-CccCCCCeEEEe---CCHHHHHHHH
Confidence 99999999999994 545 221 1111 11 2 8899999655 557799999995 5 78888887
Q ss_pred hhhhh-c---cc------CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCc
Q 041151 301 KIASI-A---LS------PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEG 369 (463)
Q Consensus 301 ~~~~~-~---~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g 369 (463)
..... . +. ...+.+.+++..+. ....++...++.+++++++.+.|+++||+.+.. +++
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 291 (424)
T 2po3_A 223 ALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT-----------SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRH 291 (424)
T ss_dssp HHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGG
T ss_pred HHHhcCccccccccccCcCCCcCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCC
Confidence 66431 1 10 11223333333321 223344566777778888999998888888765 444
Q ss_pred e---eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-------------CCC-------cEEE
Q 041151 370 A---MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-------------EGI-------FHLR 426 (463)
Q Consensus 370 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-------------~~~-------~~lR 426 (463)
+ +++| .+.++... .+. +..+ +.+.|.++||.+.+. |..+ ... ..+|
T Consensus 292 ~~~~~~~~-~i~~~~~~------~~~-~~~~-l~~~L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~ 360 (424)
T 2po3_A 292 GLNNHQYV-IVEIDEAT------TGI-HRDL-VMEVLKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLS 360 (424)
T ss_dssp SCCCCCCE-EEEECHHH------HSS-CHHH-HHHHHHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEE
T ss_pred CccccEEE-EEEECCcc------chh-hHHH-HHHHHHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEE
Confidence 3 2332 13333200 000 1333 455678899999872 2210 001 1277
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+++. .+++|+++++++|++++++..+.
T Consensus 361 l~~~~~~t~e~i~~~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 361 LPTGTAIGDDDIRRVADLLRLCATRGREL 389 (424)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 7744 78999999999999998876543
No 147
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.94 E-value=3.4e-26 Score=229.91 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KR 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~ 168 (463)
....++++.++++++ .+ ++++++++++++..++.+++ ++||+|+++ .|.++ ..
T Consensus 64 ~~~~~l~~~la~~~g------~~--~~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 134 (398)
T 2rfv_A 64 PTTDALEKKLAVLER------GE--AGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV 134 (398)
T ss_dssp HHHHHHHHHHHHHHT------CS--EEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHhC------CC--cEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEe
Confidence 344567777777663 22 45555556699999999997 899999997 23333 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
.. .|+ +.|++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.+.+. . .+
T Consensus 135 ~~--~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~--~---~~ 197 (398)
T 2rfv_A 135 DA--AKP-EEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ--Q---PL 197 (398)
T ss_dssp CT--TSH-HHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--C---GG
T ss_pred CC--CCH-HHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC--C---ch
Confidence 11 278 999998876 7999999999999999997 888888999999999999999976551 1 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHH-HHHhhhh-h-cccCChHHHHHHHHhcC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVD-EIYKIAS-I-ALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~~~q~~~~~~l~ 322 (463)
. + +.++++.|+||++ +.+|+|+ ||++. ++++++ .+..... . +.+.+.+.|.++.+.++
T Consensus 198 -~----~-------~~di~~~s~sK~~-~~~g~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (398)
T 2rfv_A 198 -Q----L-------GADIVVHSVTKYI-NGHGDVIGGIIVG---KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK 259 (398)
T ss_dssp -G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred -h----h-------CCcEEEEeCcccc-cCCCCceEEEEEE---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhh
Confidence 1 1 1358999999999 7899998 99994 787776 6665554 3 45778888888888775
No 148
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=1.1e-26 Score=238.34 Aligned_cols=367 Identities=17% Similarity=0.165 Sum_probs=236.4
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
.++..++++.+..+.....+++..|.++++++.|.+.. ++ -. +.+ ++.+++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~yl------D~----------~~--~~~------~~~v~~a~~~~ 62 (467)
T 2oqx_A 7 FRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFI------DL----------LT--DSG------TGAVTQSMQAA 62 (467)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSE------EC----------SC--CSS------CSCCCHHHHHH
T ss_pred hheeeecccccccHHHHHHHHHHcCCCceeccCCCeeE------ec----------cc--CCC------cHHHHHHHHHH
Confidence 67788999988888888888888899999999987642 00 00 001 24566777776
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC-----C----CEEEEc--
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE-----G----DGVVLL-- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-----g----d~Vlvp-- 161 (463)
+.. ....|++..+..+||++++++++ .+++++|+|+++++..++.++. ++ | |+|+++
T Consensus 63 l~~---~~~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~~gt~A~~~al~~~~-~~~~~~~G~~~~d~Ii~~~~ 130 (467)
T 2oqx_A 63 MMR---GDEAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNY 130 (467)
T ss_dssp TTS---CCCCSSSCHHHHHHHHHHHHHHC--------CSEEEEEC--CCSHHHHHHHHH-HHHHHHHCCCTTTCEEEESS
T ss_pred hcc---CcceeccCchhHHHHHHHHHHhC--------cCcEEEcCCcHHHHHHHHHHHh-ccccccCCCCccceEEeccc
Confidence 654 23468877788999999999984 3789999999999999999997 78 8 887775
Q ss_pred c-----------Ccee---------cC-----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHH
Q 041151 162 F-----------HTTW---------KR-----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLR 215 (463)
Q Consensus 162 ~-----------g~~~---------~~-----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~ 215 (463)
+ |..+ +. ..+.+|+ +.|++++++.. .+++++|++++|+||| |.+++.++++
T Consensus 131 h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~ 207 (467)
T 2oqx_A 131 FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDL-EGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLK 207 (467)
T ss_dssp CCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCH-HHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHH
T ss_pred ccccchhhhhccCcceeeccccccccCCCCCCccCCcCH-HHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHH
Confidence 2 2222 01 2346799 99999998521 0168999999999998 8999999999
Q ss_pred HHHHHhhhCCeEEEecccccc----------cccCCCCCccchHHHHHh-cCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 216 EILRFCYQENLVLLGDEVYQQ----------NIYQDERPFVSSKKVLMD-MGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
+|+++|++||++||+|+++.. ..+ .+. +...+..+ + ...+ +++.|+||++ |++ . .|
T Consensus 208 ~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~-~g~---~~~~~~~~~~----~~~d--~~~~s~sK~~-g~~-~-Gg 274 (467)
T 2oqx_A 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY-KDW---TIEQITRETY----KYAD--MLAMSAKKDA-MVP-M-GG 274 (467)
T ss_dssp HHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGG-TTS---CHHHHHHHHG----GGCS--EEEEESSSTT-CCS-S-CE
T ss_pred HHHHHHHHcCCEEEEEchhhhhhhhhcccccccc-cCc---cHHHHhhhhh----ccCC--eEEEeccccc-CCC-C-ce
Confidence 999999999999999966543 123 122 33332210 0 0111 4578999998 766 1 27
Q ss_pred EEEecCCChh-HHHHHHhhhh----h-cc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 285 YFEMTNIPPK-TVDEIYKIAS----I-AL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 285 ~~~~~~~~~~-~~~~l~~~~~----~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
|++. +++ +++.+.+... . .. ..+...+.++. ++. ..+..+.+ +...++..++++++.+.|+
T Consensus 275 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~------~~l~~~~~--~~~~~~~~~~~~~l~~~L~ 342 (467)
T 2oqx_A 275 LLCM---KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAME-RLA------VGLYDGMN--LDWLAYRIAQVQYLVDGLE 342 (467)
T ss_dssp EEEE---CSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHH-HHH------HHHHHTTC--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEe---cChhHHHHHHHHHHhhhccCCcccccchhhhHHH-HHH------HhhHhhhh--HHHHHHHHHHHHHHHHHHH
Confidence 7773 555 4444433221 0 10 01111121111 110 00011110 1233445677889999998
Q ss_pred cCCCcccccCCceeEEeeeccC--ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC--CCC--------CCCcEE
Q 041151 358 SCRNVVCNFTEGAMYSFPQIRL--PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF--GQK--------EGIFHL 425 (463)
Q Consensus 358 ~~pg~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f--~~~--------~~~~~l 425 (463)
+. |+.+. |.+++++|+++.. +. . + .... +...++..++.++||.+.|+..| +.. .+.+++
T Consensus 343 ~~-~~~~~-~~~~~~~~~~~~~~~~~-~-~---~~~~-~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~i 414 (467)
T 2oqx_A 343 EI-GVVCQ-QAGGHAAFVDAGKLLPH-I-P---ADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELL 414 (467)
T ss_dssp HT-TCCEE-EECSSCEEEEHHHHSTT-S-C---GGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred HC-CCeee-cCCceEEEEechhhccc-C-C---cccc-cHHHHHHHHHHhcCceecccccccccccccccccccCccCeE
Confidence 88 88877 7788999976631 10 0 0 0000 02233445548899999996543 210 123689
Q ss_pred EEEec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 426 RTTIL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 426 Ris~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|++++ .+++++++++++|++++++..
T Consensus 415 Rl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 415 RLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp EECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99999 688999999999999987643
No 149
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.94 E-value=2.2e-26 Score=235.24 Aligned_cols=312 Identities=13% Similarity=0.048 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
|+.+++++.+++... ..|+...+..+++.++++++.+..+.. ..++|++|+|+++++..+++.... ..++.|++
T Consensus 82 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~ 156 (453)
T 4ffc_A 82 HPAVAAAIADQATHF----THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVENAIKVARLATGRPAVVA 156 (453)
T ss_dssp CHHHHHHHHHHHHHC----SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhc----cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999999988762 345555566778888888887765422 257999999999999999987641 24467777
Q ss_pred c----cCce-------------------------e-c-C----CCcccChH-------HHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTT-------------------------W-K-R----QQIGVLII-------NDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~-------------------------~-~-~----~~~~~d~~-------~~l~~~l~~~~~~~~~~~~i~l 198 (463)
. +|.. . + . +.++.+.. +.|++.+.. +..++++
T Consensus 157 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~------~~~aavi 230 (453)
T 4ffc_A 157 FDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA------QSLAAII 230 (453)
T ss_dssp ETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG------GGEEEEE
T ss_pred EcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC------CCEEEEE
Confidence 4 1111 0 1 0 12223210 233333222 4567778
Q ss_pred ECCCCCCc--cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC
Q 041151 199 INPGNPTG--QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW 276 (463)
Q Consensus 199 ~~p~NPtG--~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 276 (463)
+.|+|++| ...+.+.+++|.++|++||++||+||+|..+... +. ....... +. ...+.||||++
T Consensus 231 ~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~-g~-~~a~~~~--~~---------~pdi~t~sK~~- 296 (453)
T 4ffc_A 231 IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFART-GA-WFASEHE--GI---------VPDIVTMAKGI- 296 (453)
T ss_dssp ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSTHHHH--TC---------CCSEEEECGGG-
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcc-cc-cchhhhc--CC---------CcchHhhhhhh-
Confidence 88988887 4457788999999999999999999999986442 21 1122211 11 12245799999
Q ss_pred CCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 277 GECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 277 g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
+. |+|+||++ +++++++.+.+... .+++.+++.|.++.++|+ ... .+.+.++++++.+++.+.
T Consensus 297 ~~-G~~~G~~~---~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~-~~~~~~~~~~~~~~l~~~ 360 (453)
T 4ffc_A 297 AG-GMPLSAVT---GRAELMDAVYAGGLGGTYGGNPVTCAAAVAALG-----------VMR-ELDLPARARAIEASVTSR 360 (453)
T ss_dssp GT-TSSCEEEE---EEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHH
T ss_pred cC-CcCeEEEE---ECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHH-----------Hhh-hhhHHHHHHHHHHHHHHH
Confidence 65 99999998 58888888766543 578889999999988874 111 112334444444444444
Q ss_pred h----hcCCCcccccCCceeEEeeeccC-----ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEE
Q 041151 356 F----NSCRNVVCNFTEGAMYSFPQIRL-----PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426 (463)
Q Consensus 356 L----~~~pg~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lR 426 (463)
| ..+|++....+.| .++|+.+.- |... ....+...|.++||.+.|+..|+ +++|
T Consensus 361 l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~Gv~v~~~~~~~-----~~iR 423 (453)
T 4ffc_A 361 LSALAEEVDIIGEVRGRG-AMLAIEIVKPGTLEPDAA-----------LTKSIAAEALSQGVLILTCGTFG-----NVIR 423 (453)
T ss_dssp HHHHHHHCSSEEEEEEET-TEEEEEEBCTTSCCBCHH-----------HHHHHHHHHHHTTEECCEECTTS-----CEEE
T ss_pred HHHHHhhCCCeEEEEeec-eEEEEEEecCcccCCCHH-----------HHHHHHHHHHhCCCEEecCCCCC-----CEEE
Confidence 4 4455555444444 455544421 1110 12334455667899999976554 3799
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|+++ .+++++++++++|+++++++.
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 424 LLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9877 789999999999999998764
No 150
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.94 E-value=4.1e-26 Score=231.92 Aligned_cols=315 Identities=10% Similarity=0.020 Sum_probs=198.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--CCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG--EGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vl 159 (463)
|+.+++++.+++... ....|+. ....+|++++++++ + .+++|++|+|+++++..+++.+. . +++.|+
T Consensus 73 ~p~v~~a~~~~~~~~--~~~~~~~-~~~~~l~~~la~~~----~---~~~~v~~~~sGsea~~~ai~~a~-~~~~~~~vi 141 (434)
T 3l44_A 73 HPHITKAITTAAENG--VLYGTPT-ALEVKFAKMLKEAM----P---ALDKVRFVNSGTEAVMTTIRVAR-AYTGRTKIM 141 (434)
T ss_dssp CHHHHHHHHHHHHHC--SCCSSCC-HHHHHHHHHHHHHC----T---TCSEEEEESSHHHHHHHHHHHHH-HHHCCCEEE
T ss_pred CHHHHHHHHHHHHhC--cCCCCCC-HHHHHHHHHHHHhC----C---CCCEEEEeCchHHHHHHHHHHHH-HhhCCCEEE
Confidence 789999999888762 2233432 33456666666654 2 57899999999999999999875 4 678888
Q ss_pred Ec----cCcee---------------cCCCcc-------------cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 160 LL----FHTTW---------------KRQQIG-------------VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 160 vp----~g~~~---------------~~~~~~-------------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
++ +|... +..... -|+ +.|++++++.. .++++|+++.++|++|.
T Consensus 142 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~vi~ep~~~~~G~ 217 (434)
T 3l44_A 142 KFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNV-ETLKEALDKWG---HEVAAILVEPIVGNFGI 217 (434)
T ss_dssp EETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCH-HHHHHHHHHHG---GGEEEEEECSSBCTTSC
T ss_pred EEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccH-HHHHHHHHhCC---CCEEEEEEcCCCCCCCC
Confidence 85 22111 001101 178 99999998531 14555554444555665
Q ss_pred CC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 208 CL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 208 ~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+. +++.+++|.++|++||++||+||+|.++ .. +. ....... +. .. -+.||||++ + +|+|+||+
T Consensus 218 ~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~-g~-~~~~~~~--~~----~~-----di~t~sK~~-~-~G~~iG~~ 281 (434)
T 3l44_A 218 VEPKPGFLEKVNELVHEAGALVIYDEVITAF-RF-MY-GGAQDLL--GV----TP-----DLTALGKVI-G-GGLPIGAY 281 (434)
T ss_dssp BCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TS-SS-SCHHHHH--TC----CC-----SEEEEEGGG-G-TTSSCEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeccccce-ec-cc-cHHHHHc--CC----CC-----Ceeehhhhh-c-CCcCeeeE
Confidence 55 8889999999999999999999999987 42 22 1112111 11 11 245899999 6 79999999
Q ss_pred EecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 041151 287 EMTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS---- 358 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---- 358 (463)
+ +++++++.+.+. ...+++.+++.|.++.++++. ..+ ++..++++++++.+.+.|++
T Consensus 282 ~---~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 346 (434)
T 3l44_A 282 G---GKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEV-----------LQQ-EGLYEKLDELGATLEKGILEQAAK 346 (434)
T ss_dssp E---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHH-----------HTS-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E---EcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHH-----------HHc-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 589998888662 224678899999988887641 111 22344455555555555544
Q ss_pred CCCcccccCCceeEEeeeccCCh--hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 359 CRNVVCNFTEGAMYSFPQIRLPP--KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 359 ~pg~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
++.+....+.|.++ ++.+.-+. ..... .. ........+...|.++||.+.|+.. .++|+++..+++++
T Consensus 347 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~rl~~~~t~e~i 416 (434)
T 3l44_A 347 HNIDITLNRLKGAL-TVYFTTNTIEDYDAA-QD-TDGEMFGKFFKLMLQEGVNLAPSKY-------EAWFLTTEHTKEDI 416 (434)
T ss_dssp TTCCEEEEEETTEE-EEEESSSCCCSHHHH-HH-SCHHHHHHHHHHHHHTTEECCSSTT-------CCEECCTTCCHHHH
T ss_pred CCCCEEEEeeccEE-EEEEecCcccchhhc-cc-cCHHHHHHHHHHHHHCCeEEeecCC-------CcEEEecccCHHHH
Confidence 33233334445444 43332110 00000 00 0000112344556678999998642 25899877999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEFME 452 (463)
Q Consensus 437 ~~~~~~l~~~l~~~~~ 452 (463)
++++++|+++++++++
T Consensus 417 ~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 417 EYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987754
No 151
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.94 E-value=1.2e-24 Score=219.84 Aligned_cols=350 Identities=11% Similarity=0.052 Sum_probs=219.8
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
..+++++..+.++....+.....+ ..+.++|..+.... |+.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~~-------------------------------~~~v~~a 51 (425)
T 3ecd_A 7 PFFSQSLAERDASVRGAILKELER----QQSQVELIASENIV-------------------------------SRAVLDA 51 (425)
T ss_dssp HHHHCCHHHHCHHHHHHHHHHHHH----HHHSEECCTTCCCC-------------------------------CHHHHHH
T ss_pred hHHHHHHHhhCHHHHHHHHHHHHH----HhcceeeecccCCC-------------------------------CHHHHHH
Confidence 357788888888766655433222 23468886654432 8899999
Q ss_pred HHHHhhhcCC----CCCccCCCCCCHHHHHHHH-HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 89 AKHYLSLTSG----GLGAYSDSRGIPGVRKEVA-EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 89 ~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
+.+.+.+... ....|+.. ...++.++++ +.+.+..|. +. ..++++|+++++..++.+++ ++||+|+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~--~~-~~v~~~~Gs~a~~~al~~~~-~~gd~Vi~~~~ 126 (425)
T 3ecd_A 52 QGSVLTNKYAEGYPGKRYYGGC-EFADEVEALAIERVKRLFNA--GH-ANVQPHSGAQANGAVMLALA-KPGDTVLGMSL 126 (425)
T ss_dssp HTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTC--SE-EECCCSSHHHHHHHHHHHHC-CTTCEEEEECC
T ss_pred HhhhhhcccccCCCcchhcCCC-hHHHHHHHHHHHHHHHHhCC--CC-ceeecCchHHHHHHHHHHcc-CCCCEEEEccc
Confidence 9887743100 01112222 1222333333 444444342 22 23457888899999999997 999999997
Q ss_pred -cCc---------------ee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 162 -FHT---------------TW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 162 -~g~---------------~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++. ++ ..+.+.+|+ +.|++.+++. ++++|++++|+||+- . ++++|.++
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~~~~--~---~l~~i~~l 195 (425)
T 3ecd_A 127 DAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDY-DQVEALAQQH-----KPSLIIAGFSAYPRK--L---DFARFRAI 195 (425)
T ss_dssp ------------------CEEEEECCCTTTSSCCH-HHHHHHHHHH-----CCSEEEEECSCCCSC--C---CHHHHHHH
T ss_pred ccccceecchhhhhcccceeeeecCCCcccCccCH-HHHHHHHhhc-----CCcEEEEccccCCCc--C---CHHHHHHH
Confidence 211 11 223578999 9999999854 799999999999753 2 36889999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|++||++||+||+|....+..+.....+ .. ..|++.|+||++ +|+|+||++. .++++.+.+.
T Consensus 196 ~~~~~~~li~De~~~~g~~~~~~~~~~~-----------~~--~di~~~s~sK~l---~g~~~g~~~~--~~~~~~~~~~ 257 (425)
T 3ecd_A 196 ADSVGAKLMVDMAHIAGVIAAGRHANPV-----------EH--AHVVTSTTHKTL---RGPRGGFVLT--NDEEIAKKIN 257 (425)
T ss_dssp HHHHTCEEEEECGGGHHHHHTTSSCCGG-----------GT--CSEEEEESSGGG---CCCSCEEEEE--SCHHHHHHHH
T ss_pred HHHcCCEEEEECcChHhhhhcccccCch-----------hc--CcEEEecCCccc---CCCCcEEEEe--CCHHHHHHHH
Confidence 9999999999999654322122222111 11 127899999987 5789999995 3367777776
Q ss_pred hhhhhc--ccCChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CceeEEeee
Q 041151 301 KIASIA--LSPNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNVVCNFT-EGAMYSFPQ 376 (463)
Q Consensus 301 ~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g~~~~~~~ 376 (463)
...... .+++...+.++..++. .. ..+.+..+++++++++++.+.|.+. |+.+..+ .+++++|+.
T Consensus 258 ~~~~~~~~~~~~~~~~~a~~~a~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 326 (425)
T 3ecd_A 258 SAVFPGLQGGPLMHVIAGKAVAFG----------EALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVD 326 (425)
T ss_dssp HHHC-----CCCHHHHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEE
T ss_pred hhhCccccCCccHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEE
Confidence 654322 2333333333333321 11 1334567888899999999999886 8877654 466777755
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---CCCCcEEEEEec------CCcCcHHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---KEGIFHLRTTIL------PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---~~~~~~lRis~~------~~~e~i~~~~~~l~~~l 447 (463)
+. .. ..+.+.+...|+++||.+.++..++. .....++|+++. .+++++++++++|++++
T Consensus 327 ~~--~~----------~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l 394 (425)
T 3ecd_A 327 LR--PK----------GLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVF 394 (425)
T ss_dssp CG--GG----------TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred eC--CC----------CCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHH
Confidence 43 11 01345566778889999994432221 122357999965 24789999999999888
Q ss_pred HHH
Q 041151 448 DEF 450 (463)
Q Consensus 448 ~~~ 450 (463)
++.
T Consensus 395 ~~~ 397 (425)
T 3ecd_A 395 EAL 397 (425)
T ss_dssp HHH
T ss_pred hcc
Confidence 765
No 152
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.94 E-value=2e-24 Score=217.86 Aligned_cols=309 Identities=11% Similarity=0.007 Sum_probs=207.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc------CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAY------SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y------~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
|+.+++++.+.+.+. ...+| .......++++.+.+.+.+.+| +++++|++++| ++++..++.+++ ++|
T Consensus 38 ~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~~sG-t~a~~~~~~~~~-~~g 111 (417)
T 3n0l_A 38 LPEVMEVMGSILTNK--YAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQPNSG-SQANQGVYAALI-NPG 111 (417)
T ss_dssp CHHHHHHHTBGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHS-CTT
T ss_pred CHHHHHHHhhhhhcc--ccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEeccH-HHHHHHHHHHhc-CCC
Confidence 888999988777432 11223 2223334555544445544445 45667988888 799999999998 999
Q ss_pred CEEEEc---c------Cce---------e----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 156 DGVVLL---F------HTT---------W----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 156 d~Vlvp---~------g~~---------~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
|+|+++ + +.. + ....+.+|+ +.|++.+++. ++++|++++|+| |..++
T Consensus 112 d~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~--G~~~~--- 180 (417)
T 3n0l_A 112 DKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDY-EKVREIAKKE-----KPKLIVCGASAY--ARVID--- 180 (417)
T ss_dssp CEEEEECC----------------CCSEEEEECCCTTSSCCH-HHHHHHHHHH-----CCSEEEECCSSC--CSCCC---
T ss_pred CEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCH-HHHHHHHHhc-----CCeEEEECCccc--CccCC---
Confidence 999997 1 111 1 234567899 9999999843 799999888887 77877
Q ss_pred HHHHHHHhhhCCeEEEeccccc-ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 214 LREILRFCYQENLVLLGDEVYQ-QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+++|.++|++||++||+||+|. ...+ .+..+..+ . ...|++.|+||++ +|+|+||++. .+
T Consensus 181 l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~-----------~--~~di~~~s~sK~l---~g~~~G~~~~--~~ 241 (417)
T 3n0l_A 181 FAKFREIADEIGAYLFADIAHIAGLVV-AGEHPSPF-----------P--YAHVVSSTTHKTL---RGPRGGIIMT--ND 241 (417)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHH-TTSSCCCT-----------T--TCSEEEEESSTTT---CSCSCEEEEE--SC
T ss_pred HHHHHHHHHHcCCEEEEECccchhhhh-cccCCCcc-----------c--cceEEEeeCcccc---CCCCeeEEEE--CC
Confidence 7788889999999999999964 3333 22211111 1 1238899999987 6889999995 23
Q ss_pred hhHHHHHHhhhh-hc-ccCChHHHHHHHHhcCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CC
Q 041151 293 PKTVDEIYKIAS-IA-LSPNVPAQIFMGLMVNPLKPGDISYEQ-FVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TE 368 (463)
Q Consensus 293 ~~~~~~l~~~~~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~ 368 (463)
+++++.+..... .. .+++...+.++..++. . ...+.+..++++.++++++.+.|.+. |+.+.. +.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 310 (417)
T 3n0l_A 242 EELAKKINSAIFPGIQGGPLMHVIAAKAVGFK----------FNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGT 310 (417)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred HHHHHHHhhhhCCcccCCcHHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCC
Confidence 788888877654 22 2333444444443331 1 11334567778888899999999884 877654 23
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC---CCCcEEEEEec------CCcCcHHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK---EGIFHLRTTIL------PAEEDMPAI 439 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~---~~~~~lRis~~------~~~e~i~~~ 439 (463)
.+.++|+++..+ + .+...+..+|.++||.+.++..+... -....+|+++. .++++++++
T Consensus 311 ~~~~~~~~~~~~-~-----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~ 378 (417)
T 3n0l_A 311 DNHLVLMSFLDR-E-----------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV 378 (417)
T ss_dssp SSSEEEEECTTS-S-----------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CceEEEEEcccC-C-----------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence 455777555421 1 13445667788999999976544321 12346999987 357999999
Q ss_pred HHHHHHHHHH
Q 041151 440 MESFKKFNDE 449 (463)
Q Consensus 440 ~~~l~~~l~~ 449 (463)
+++|++++++
T Consensus 379 ~~~l~~~l~~ 388 (417)
T 3n0l_A 379 SNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999988754
No 153
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.93 E-value=1.6e-25 Score=227.60 Aligned_cols=307 Identities=13% Similarity=0.070 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~ 153 (463)
++.+++++.+++.... .|+.. ...+++.++++.+.+..| .++|++++|+++++..+++++.. +
T Consensus 83 ~p~v~~ai~~~~~~~~----~~~~~-~~~~~~~~l~~~la~~~g----~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~ 153 (433)
T 1z7d_A 83 HPNILNAMINQAKNLT----ICSRA-FFSVPLGICERYLTNLLG----YDKVLMMNTGAEANETAYKLCRKWGYEVKKIP 153 (433)
T ss_dssp CHHHHHHHHHHHTTCS----CCCTT-SEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHhCC----CccCC-cCCHHHHHHHHHHHhhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCC
Confidence 8899999998887631 12111 123444445544444433 58999999999999999987530 3
Q ss_pred CC-CEEEEc---c-Ccee------c------------CCCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 154 EG-DGVVLL---F-HTTW------K------------RQQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 154 ~g-d~Vlvp---~-g~~~------~------------~~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
+| +.|+++ + |... . .... -.|+ +.|+++++.. ++++|+++..+|+||.
T Consensus 154 ~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~-~~le~~l~~~-----~~~~vi~ep~~~~~G~ 227 (433)
T 1z7d_A 154 ENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDL-EALEEELKDP-----NVCAFIVEPIQGEAGV 227 (433)
T ss_dssp TTCCEEEEETTC--------------------------CEEEECTTCH-HHHHHHHTST-----TEEEEEECSSBSTTTS
T ss_pred CCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCH-HHHHHHhCCC-----CEEEEEEECCCCCCCc
Confidence 67 888886 2 1111 0 0000 1378 9999998421 6777665544677897
Q ss_pred C-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEE
Q 041151 208 C-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGY 285 (463)
Q Consensus 208 ~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~ 285 (463)
+ ++.+.+++|.++|++||+++|+||+|..+... +. ...+. .++. .. . + .||||++ + +| +|+||
T Consensus 228 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~-g~-~~~~~----~~~~--~~--d-i--~t~sK~l-~-~G~~~~G~ 292 (433)
T 1z7d_A 228 IVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT-GK-LLCVH----HYNV--KP--D-V--ILLGKAL-S-GGHYPISA 292 (433)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSGGG----GGTC--CC--S-E--EEECGGG-G-TTSSCCEE
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcC-Cc-chhhH----hcCC--CC--C-E--EEECccc-c-CCCCCeEE
Confidence 5 68889999999999999999999999865431 21 11111 1100 11 1 2 3899999 6 79 99999
Q ss_pred EEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C
Q 041151 286 FEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----R 360 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----p 360 (463)
++ +++++++.+.... ..+++.+++.+.++.++|+ ...+ +.+.++++++++++.+.|+++ |
T Consensus 293 v~---~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~ 357 (433)
T 1z7d_A 293 VL---ANDDIMLVIKPGEHGSTYGGNPLAASICVEALN-----------VLIN-EKLCENAEKLGGPFLENLKRELKDSK 357 (433)
T ss_dssp EE---ECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred EE---ECHHHHhhhccccccccCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 4888877765533 2466778888888877763 1211 245666777777888777653 3
Q ss_pred CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHH
Q 041151 361 NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPA 438 (463)
Q Consensus 361 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~ 438 (463)
.+....+ .+.++|+.+.-.. .+..+++. .|.++||.+.|+ +.+++|++++ .+++++++
T Consensus 358 ~~~~~~~-~g~~~~i~~~~~~-----------~~~~~~~~-~l~~~Gv~v~~~-------~~~~iRi~~~~~~t~e~i~~ 417 (433)
T 1z7d_A 358 IVRDVRG-KGLLCAIEFKNEL-----------VNVLDICL-KLKENGLITRDV-------HDKTIRLTPPLCITKEQLDE 417 (433)
T ss_dssp TEEEEEE-ETTEEEEEECTTT-----------CCHHHHHH-HHHHTTEECCEE-------TTTEEEECCCTTCCHHHHHH
T ss_pred CeEEEEe-eeeEEEEEEccCh-----------hHHHHHHH-HHHHCCeEEecC-------CCCEEEEECCcCCCHHHHHH
Confidence 2222333 3455665553110 12344444 455689999985 1348999887 78999999
Q ss_pred HHHHHHHHHHHHHHH
Q 041151 439 IMESFKKFNDEFMEQ 453 (463)
Q Consensus 439 ~~~~l~~~l~~~~~~ 453 (463)
++++|+++++++.++
T Consensus 418 ~l~~l~~~l~~~~~~ 432 (433)
T 1z7d_A 418 CTEIIVKTVKFFDER 432 (433)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876544
No 154
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=2.9e-25 Score=225.31 Aligned_cols=303 Identities=14% Similarity=0.109 Sum_probs=197.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCC---------CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSR---------GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~---------g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~ 152 (463)
|+.+++++.+.+... ..|+... ...++|++++++++ +++++|++|+|+++++..++.++.+
T Consensus 31 ~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~ 100 (432)
T 3a9z_A 31 EPEVIQAVTEAMKEA----WGNPSSSYVAGRKAKDIINTARASLAKMIG------GKPQDIIFTSGGTESNNLVIHSTVR 100 (432)
T ss_dssp CHHHHHHHHHHHHHC----CSCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh----cCCCccCcHHHHHHHHHHHHHHHHHHHHcC------CCcCeEEEeCChHHHHHHHHHHHHh
Confidence 889999998887652 2333211 12588888888885 6778999999999999999998841
Q ss_pred -------CCCCEEEEc------------------------------cCcee---cC--CCcccChHHHHHHHHHHHHhcC
Q 041151 153 -------GEGDGVVLL------------------------------FHTTW---KR--QQIGVLIINDLQQSVAQARSKG 190 (463)
Q Consensus 153 -------~~gd~Vlvp------------------------------~g~~~---~~--~~~~~d~~~~l~~~l~~~~~~~ 190 (463)
++||+|+++ .|.++ +. .++.+|+ +.|++++++
T Consensus 101 ~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~-~~l~~~i~~----- 174 (432)
T 3a9z_A 101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEV-EDILAAVRP----- 174 (432)
T ss_dssp HHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCH-HHHHHTCCT-----
T ss_pred hhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCH-HHHHHhccC-----
Confidence 378766654 14444 22 2556899 999998876
Q ss_pred CceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC----------eEEEecccccccccCCCCCccchHHHHHhcCCCCC
Q 041151 191 ITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN----------LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260 (463)
Q Consensus 191 ~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~----------~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
++++|++++|+||||.+++. ++|.++|++++ ++||+|++|+.+. ...++... .
T Consensus 175 -~~~~v~~~~~~nptG~~~~~---~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-----~~~~~~~~--------~ 237 (432)
T 3a9z_A 175 -TTCLVTIMLANNETGVIMPI---SEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-----RRVDVEDL--------G 237 (432)
T ss_dssp -TEEEEECCSBCTTTCBBCCH---HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT-----SCCCHHHH--------C
T ss_pred -CceEEEEECcccCcccccCH---HHHHHHHHhcCcccccccCCceEEEEEchhhhCC-----cccChhhc--------C
Confidence 79999999999999999995 56777888998 9999999997532 12233332 2
Q ss_pred CCceEEEEecCCcccCCCCCceeEEEEecCCChhH-HHHHHhh-------hh-hcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 261 KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT-VDEIYKI-------AS-IALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 261 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~-~~~l~~~-------~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
.+ +++.|+||++ | .|+||+++ +++. ...+... .. ..++.+...+.++.++++
T Consensus 238 ~d---~~~~s~~K~~-g---~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~--------- 298 (432)
T 3a9z_A 238 VD---FLTIVGHKFY-G---PRIGALYV---RGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD--------- 298 (432)
T ss_dssp CS---EEEEEGGGTT-C---CSCEEEEE---TTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHH---------
T ss_pred CC---EEEEehhHhc-C---CcceEEEE---ccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHH---------
Confidence 22 5689999976 4 56999996 5443 2222211 11 234567777777766653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cC-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHH
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSCRNVVCN--FT-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 404 (463)
......++++++++++++++.+.|++++|+.+. .+ ..+..+++.+.-. + .+...+. ..+
T Consensus 299 -~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~-~~l- 364 (432)
T 3a9z_A 299 -LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS-Q----------LRGYMVL-AQC- 364 (432)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST-T----------CCHHHHH-HHC-
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC-C----------CcHHHHH-HHh-
Confidence 122345678888999999999999886565432 22 1122233222210 0 0122322 222
Q ss_pred hcCeEeeCCCCCCCC--------------C---CCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 405 ATGISTVPGSGFGQK--------------E---GIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 405 ~~gI~v~pg~~f~~~--------------~---~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.||.+.+|..|... . ..+++||+++ .+++++++++++|++++++++
T Consensus 365 -~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 365 -QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp -SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 37888887655321 0 1358999999 489999999999999987654
No 155
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.93 E-value=4.3e-24 Score=217.91 Aligned_cols=346 Identities=12% Similarity=0.022 Sum_probs=223.2
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+.+++..+.++.+..+.....+. .++|+|..+ ++ +. |+.+++++
T Consensus 21 ~~~~~l~~~~~~i~~~~~~~~~~~----~~~i~l~~~-~~-------------------------~~-----~~~v~~a~ 65 (447)
T 3h7f_A 21 SMSAPLAEVDPDIAELLAKELGRQ----RDTLEMIAS-EN-------------------------FV-----PRAVLQAQ 65 (447)
T ss_dssp GGGCCHHHHCHHHHHHHHHHHHHH----HHSEECCTT-CC-------------------------CC-----CHHHHHHH
T ss_pred hhHHHHHhCCHHHHHHHHHHHHHH----hCceeEecC-CC-------------------------CC-----CHHHHHHH
Confidence 456677777777666554433222 257888543 33 11 88999999
Q ss_pred HHHhhhcCCCCCccCCC---CCCHHHH--HHHH-HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 90 KHYLSLTSGGLGAYSDS---RGIPGVR--KEVA-EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~---~g~~~lr--~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
.+.+.+. ...+|+.. .|...++ ++++ +++.+.+|.+ . ..++++|+++++..++.+++ +|||+|+++
T Consensus 66 ~~~~~~~--~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~-~~v~~~sGs~a~~~a~~~~~-~~Gd~Vl~~~~ 139 (447)
T 3h7f_A 66 GSVLTNK--YAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--F-ANVQPHSGAQANAAVLHALM-SPGERLLGLDL 139 (447)
T ss_dssp TSGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHHHHHHHHHHC-CTTCEEEEECG
T ss_pred HHHhcCC--ccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--c-eEEEeCCHHHHHHHHHHHhc-CCCCEEEecCc
Confidence 8777531 22344332 2444444 5555 6666555533 2 23337777899999999997 999999997
Q ss_pred -cCc---------------ee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 162 -FHT---------------TW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 162 -~g~---------------~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++. .+ ....+.+|+ +.|++.++.. ++++|++++|+||++. ++++|.++
T Consensus 140 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~i~~~~~~~~~~~-----~l~~i~~l 208 (447)
T 3h7f_A 140 ANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDM-DAVRATALEF-----RPKVIIAGWSAYPRVL-----DFAAFRSI 208 (447)
T ss_dssp GGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCH-HHHHHHHHHH-----CCSEEEEECSSCCSCC-----CHHHHHHH
T ss_pred ccccccchhhhhhhcCCeeEEEEcCcCcccCCcCH-HHHHHHHHhc-----CCeEEEEcCCCCCCcc-----CHHHHHHH
Confidence 221 11 124567999 9999999764 7899999999999987 48889999
Q ss_pred hhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 221 CYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 221 a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
|+++|++||+||+|.. +.+ .+.....+ + . ..|++.|+||++ +|+|+||++ +++++++.+
T Consensus 209 ~~~~g~lli~Dea~~~g~~~-~g~~~~~~----~------~---~di~~~s~sK~l---~G~~gG~i~---~~~~~~~~l 268 (447)
T 3h7f_A 209 ADEVGAKLLVDMAHFAGLVA-AGLHPSPV----P------H---ADVVSTTVHKTL---GGGRSGLIV---GKQQYAKAI 268 (447)
T ss_dssp HHHHTCEEEEECTTTHHHHH-TTSSCCST----T------T---CSEEEEESSGGG---CCCSCEEEE---ECGGGHHHH
T ss_pred HHHcCCEEEEECCchhhhhc-CCCCCCCC----C------C---CcEEEecCCcCC---CCCCeEEEE---ECHHHHHHH
Confidence 9999999999999753 333 12211111 1 1 127799999988 388999999 488898888
Q ss_pred Hhhhh-hcc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCccccc-CCceeE
Q 041151 300 YKIAS-IAL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RNVVCNF-TEGAMY 372 (463)
Q Consensus 300 ~~~~~-~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg~~~~~-~~g~~~ 372 (463)
.+... ... +++...+.++..++... ...+.+..++++.++++.+.+.|.+. +|+.+.. +.++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~a~~~a~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~ 339 (447)
T 3h7f_A 269 NSAVFPGQQGGPLMHVIAGKAVALKIA---------ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHL 339 (447)
T ss_dssp HHHHTTTTCSSCCHHHHHHHHHHHHHT---------TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSE
T ss_pred hhhcCCcccCCccHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCE
Confidence 77643 222 23333344444443210 01234557778888899999998875 5777654 346677
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEEEEec------CCcCcHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLRTTIL------PAEEDMPAIMES 442 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lRis~~------~~~e~i~~~~~~ 442 (463)
+|+++.... .+...+..+|+++||.+. |+..++. ....++||++. .++++++++++.
T Consensus 340 ~~~~~~~~~------------~~~~~~~~~l~~~GI~v~~~~i~~~~~~p-~~~~~lRig~~~~~~~~~~~eei~~~~~~ 406 (447)
T 3h7f_A 340 VLVDLRDSP------------LDGQAAEDLLHEVGITVNRNAVPNDPRPP-MVTSGLRIGTPALATRGFGDTEFTEVADI 406 (447)
T ss_dssp EEEECTTSS------------CCHHHHHHHHHHTTEECBC--------------CEEEEECHHHHHHTCCHHHHHHHHHH
T ss_pred EEEEcCCCC------------CCHHHHHHHHHHCCeEEecccCCCCCCCC-CCCCceeccCHHHhhCCCCHHHHHHHHHH
Confidence 786664221 134556778888899998 5532222 12347999986 457999999999
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|++++++
T Consensus 407 l~~~l~~ 413 (447)
T 3h7f_A 407 IATALAT 413 (447)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9888753
No 156
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.93 E-value=1.1e-25 Score=222.94 Aligned_cols=294 Identities=14% Similarity=0.131 Sum_probs=200.6
Q ss_pred cHHHHHHHHHHhhhcCCC------CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-c-EEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLSLTSGG------LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-L-IFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~-i~~t~G~~~al~~~~~~l~~~ 153 (463)
|+.+++++.+.+.+.... ...|.+ +..++++++++.+.+.+|. +++ + |++|+|+++++..++.+++ +
T Consensus 16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t~a~~~~~~~l~-~ 90 (362)
T 2c0r_A 16 PLEVLERAQAEFVDYQHTGMSIMEMSHRGA--VYEAVHNEAQARLLALLGN--PTGYKVLFIQGGASTQFAMIPMNFL-K 90 (362)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSH--HHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHHHHHHHHHHHHC-C
T ss_pred CHHHHHHHHHHHhhhhhcCccccccCCCcH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCchHHHHHHHHhcC-C
Confidence 899999998887542110 111211 2355777777777777775 443 5 5788999999999999998 8
Q ss_pred CCCEEEEc---------------cCcee---c-C--CCcc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 154 EGDGVVLL---------------FHTTW---K-R--QQIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 154 ~gd~Vlvp---------------~g~~~---~-~--~~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
|||+|+++ .| ++ + . .+++ +|. ++++ +++ ++|+|++++|+||||.+++
T Consensus 91 ~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~-~~~~--i~~------~t~~v~~~~~~n~tG~~~~ 160 (362)
T 2c0r_A 91 EGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKL-QEIQ--LQD------NAAYLHLTSNETIEGAQFK 160 (362)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCG-GGCC--CCT------TEEEEEEESEETTTTEECS
T ss_pred CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCH-HHcc--cCC------CcCEEEEeCCcCccceecc
Confidence 99998764 45 55 2 1 1233 466 5543 443 7999999999999999755
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
++++| +|+++++|++|+.+.. +.++ .+. .+++.|+||++ |++| +||+++
T Consensus 161 --~l~~i------~~~~vivD~a~~~~~~-----~~~~-----------~~~--d~~~~s~~K~~-g~~G--~G~l~~-- 209 (362)
T 2c0r_A 161 --AFPDT------GSVPLIGDMSSDILSR-----PFDL-----------NQF--GLVYAGAQKNL-GPSG--VTVVIV-- 209 (362)
T ss_dssp --SCCCC------TTSCEEEECTTTTTSS-----CCCG-----------GGC--SEEEEETTTTT-CCSS--CEEEEE--
T ss_pred --ccccc------CCCEEEEEChhhccCC-----ccch-----------hHC--cEEEEeccccc-cCcC--cEEEEE--
Confidence 24444 7999999999986432 1122 221 27778999999 8888 999995
Q ss_pred CChhHHHHHHhh------------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKI------------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDG 355 (463)
Q Consensus 291 ~~~~~~~~l~~~------------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 355 (463)
++++++.+.+. . ...++++.+.|.++..+++ .... ..+.++++++++++++.+.
T Consensus 210 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (362)
T 2c0r_A 210 -REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLK----------WIEERGGLEGVQQANRKKASLIYDA 278 (362)
T ss_dssp -EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHH----------HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 77776655431 1 1235677788888887763 1122 2567888999999999999
Q ss_pred hhcCCCc-ccccC---CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 356 FNSCRNV-VCNFT---EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 356 L~~~pg~-~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
|++++++ .+..+ .++.++++ .++.+. +..+++ +.|.++||.+.+|..|. +++|||++
T Consensus 279 L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~-~~L~~~gi~~~~g~~~~-----~~iRis~~~ 340 (362)
T 2c0r_A 279 IDQSGGFYRGCVDVDSRSDMNITF--RLASEE----------LEKEFV-KASEQEGFVGLKGHRSV-----GGLRASIYN 340 (362)
T ss_dssp HHTSTTSSEESSCGGGBCSSEEEE--ECSCHH----------HHHHHH-HHHHHTTEESCBCCTTT-----CSEEEECCT
T ss_pred HHHcCCccccCCChHHcCCcEEEE--EcCCcc----------hHHHHH-HHHHHCCCeeccCCCCC-----CEEEEECCC
Confidence 9998435 65321 23445564 344221 134444 45778899998887662 26999999
Q ss_pred -CCcCcHHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~~ 450 (463)
.++++++++++.|+++++++
T Consensus 341 ~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 341 AVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 57899999999998887643
No 157
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.93 E-value=3.4e-24 Score=215.31 Aligned_cols=309 Identities=11% Similarity=0.052 Sum_probs=203.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
|+.+++++.+.+.+. ...+|+. .....++++++.+++.+.+| .+++.|++++| ++++..++.+++ ++|
T Consensus 36 ~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g--~~~~~i~~~sG-t~a~~~a~~~~~-~~g 109 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNK--YAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHSG-AQANMAVYFTVL-EHG 109 (405)
T ss_dssp CHHHHHHHTSGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHC-CTT
T ss_pred CHHHHHHHHHHhhcc--cccCCCCccccccchHHHHHHHHHHHHHHHHhC--CCceEEEecCc-HHHHHHHHHHhc-CCC
Confidence 889999998877531 1112221 11233455423333333334 34445556777 999999999997 899
Q ss_pred CEEEEc---c------C-------c--ee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 156 DGVVLL---F------H-------T--TW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 156 d~Vlvp---~------g-------~--~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
|.|+++ + + . ++ + ...+.+|+ +.|++.+++. ++++|++ +|+|+ |...+
T Consensus 110 d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~-- 179 (405)
T 2vi8_A 110 DTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDY-DDVREKARLH-----RPKLIVA-AAAAY-PRIID-- 179 (405)
T ss_dssp CEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCH-HHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC--
T ss_pred CEEEEecccccchhcccchhhhccceeEEEecccccccCCcCH-HHHHHHHHhc-----CCeEEEE-eCCCC-CccCC--
Confidence 999997 1 1 1 22 2 14677999 9999999864 6888776 55554 44444
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+++|.++|+++|++||+||+|+......+.....+ .. ..++++|+||+++|++| ||+++ +
T Consensus 180 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~-----------~~--~di~~~s~sK~~~g~~g---G~~~~---~ 239 (405)
T 2vi8_A 180 -FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-----------PY--AHFVTTTTHKTLRGPRG---GMILC---Q 239 (405)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-----------TT--CSEEEEESSSTTCCCSC---EEEEE---C
T ss_pred -HHHHHHHHHHcCCEEEEEccccccccccCcCCCcc-----------cc--CCEEEEeccccCCCCCC---eEEEE---c
Confidence 78889999999999999999985433111111111 11 12889999999933555 99994 7
Q ss_pred hhHHHHHHhhhh-hcccCChHHHHHH-HHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-C
Q 041151 293 PKTVDEIYKIAS-IALSPNVPAQIFM-GLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFT-E 368 (463)
Q Consensus 293 ~~~~~~l~~~~~-~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~ 368 (463)
+++++.+.+... ...+.+.+.+.++ .++++ ... .+.++++++++++++++.+.|+++ |+.+..| .
T Consensus 240 ~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 308 (405)
T 2vi8_A 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFG----------EALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGT 308 (405)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHH----------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred HHHHHHHHhhhcccccCCCCHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCC
Confidence 889888877653 3334434444444 34442 111 245678888999999999999998 8888765 4
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC----CCCCCCCcEEEEEecC------CcCcHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG----FGQKEGIFHLRTTILP------AEEDMPA 438 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~----f~~~~~~~~lRis~~~------~~e~i~~ 438 (463)
+++++|+.++.+ + .+... +...|.++||.+.+|.. ++. ...+++|++++. +++++++
T Consensus 309 ~~~~~~~~~~~~-~----------~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~-~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 309 DNHLLLVDLRPQ-Q----------LTGKT-AEKVLDEVGITVNKNTIPYDPESP-FVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp SSSEEEEECGGG-T----------CCHHH-HHHHHHHHTEECEEECCTTCSSCT-TTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred CceEEEEEccCC-C----------CCHHH-HHHHHHHcCceeccCcCccccCCC-CCCCceEEeeeeeeecCCCHHHHHH
Confidence 577888655311 1 12333 44567889999999873 222 133579999993 7899999
Q ss_pred HHHHHHHHHHHH
Q 041151 439 IMESFKKFNDEF 450 (463)
Q Consensus 439 ~~~~l~~~l~~~ 450 (463)
++++|++++++.
T Consensus 376 ~~~~l~~~~~~~ 387 (405)
T 2vi8_A 376 IAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhcc
Confidence 999999988654
No 158
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=2.6e-25 Score=221.09 Aligned_cols=295 Identities=12% Similarity=0.141 Sum_probs=200.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++ +.+++.+.+.. ..|.+..+..++|++++++++ .+++++++|+++++..++.++ + ++||+|++
T Consensus 19 ~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~~~~-~~gd~v~~ 83 (374)
T 3uwc_A 19 EP-YLNDLREFIKT-----ADFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKMLNI-GAGDEVIT 83 (374)
T ss_dssp HH-HHHHHHHHHHH-----TCCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred hH-HHHHHHHHHHc-----CCcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCCCEEEE
Confidence 55 77888777766 256677788999999999975 237888999999999999999 7 89999999
Q ss_pred c-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 161 L-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 161 p-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
+ .|.++ ....+.+|+ +.|++.+++ ++++|+ |+||||.+.+ +++|.++|++
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~---~~n~~G~~~~---~~~i~~~~~~ 150 (374)
T 3uwc_A 84 CANTFIASVGAIVQAGATPVLVDSENGYVIDP-EKIEAAITD------KTKAIM---PVHYTGNIAD---MPALAKIAKK 150 (374)
T ss_dssp ESSSCHHHHHHHHHTTCEEEEECBCTTSSBCG-GGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCCCCcCH-HHHHHhCCC------CceEEE---EeCCcCCcCC---HHHHHHHHHH
Confidence 7 56666 236788899 999998876 788877 9999999877 7778888999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+|+++|+|++|+.+..-+..+... . ..+++.|+| |++ +.+|. +|+++. .++++.+.+..
T Consensus 151 ~~~~li~D~~~~~g~~~~~~~~~~------------~---~d~~~~s~~~~K~l-~~~g~-~g~~~~--~~~~~~~~~~~ 211 (374)
T 3uwc_A 151 HNLHIVEDACQTILGRINDKFVGS------------W---GQFACFSLHPLKNL-NVWSD-AGVIIT--HSDEYAEKLRL 211 (374)
T ss_dssp TTCEEEEECTTCTTCEETTEETTS------------S---SSEEEEECSSSSSS-CCSSC-CEEEEE--SCHHHHHHHHH
T ss_pred cCCEEEEeCCCccCceeCCeeccc------------c---ccEEEEeCCCCCcC-Cccce-eEEEEe--CCHHHHHHHHH
Confidence 999999999998643211111111 0 136778866 998 65465 888886 46678787776
Q ss_pred hhhh-------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccc-
Q 041151 302 IASI-------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN-VVCNF- 366 (463)
Q Consensus 302 ~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg-~~~~~- 366 (463)
.... ....+.+...+....+ ...++..++.+++.+.+.+.|.++++ +.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~--------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 277 (374)
T 3uwc_A 212 YRNHGLINRDVCVEYGINCRMDTIQAVIANRLM--------------NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVR 277 (374)
T ss_dssp HTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG--------------GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCC
T ss_pred HHhcCccccCccccccccCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccC
Confidence 5421 1111222222222221 12334566677788888999988866 66542
Q ss_pred CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----------C---------CCcEEE
Q 041151 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----------E---------GIFHLR 426 (463)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----------~---------~~~~lR 426 (463)
+.++...|..+.+.. .+.+.+.+.|.++||.+.++...... . ....+|
T Consensus 278 ~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 345 (374)
T 3uwc_A 278 REGVYHVFHIYVLRV------------KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVIT 345 (374)
T ss_dssp CTTEECCCSSEEEEE------------TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEE
T ss_pred CCCCceeeEEEEEEc------------CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEE
Confidence 333333332122111 02333456677889999987621100 0 125799
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|++. .+++|+++++++|++++++
T Consensus 346 l~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 346 LPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9988 7899999999999988864
No 159
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.93 E-value=1.2e-25 Score=228.24 Aligned_cols=313 Identities=12% Similarity=0.043 Sum_probs=198.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
|+.+++++.+++... ....|+ .....+|++++++++. .+++|++|+|+++++..+++.+.. .+++.|++
T Consensus 71 ~p~v~~A~~~~~~~~--~~~~~~-~~~~~~l~~~la~~~~-------~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~ 140 (429)
T 3k28_A 71 NDRVVEALKAVAERG--TSFGAP-TEIENKLAKLVIERVP-------SIEIVRMVNSGTEATMSALRLARGYTGRNKILK 140 (429)
T ss_dssp CHHHHHHHHHHHHHC--SCCSSC-CHHHHHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHhhC--cCcCCC-CHHHHHHHHHHHHhCC-------CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEE
Confidence 889999999888763 222333 3445677777777652 478999999999999999988751 25677777
Q ss_pred c----cCcee---------------cCCCccc-------------ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTTW---------------KRQQIGV-------------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~~---------------~~~~~~~-------------d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
. +|... +....-. |+ +.|++.++... .++++|+++.++|++|.+
T Consensus 141 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~vi~ep~~~~~G~~ 216 (429)
T 3k28_A 141 FIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDL-ESVKYAFEQFG---DDIACVIVEPVAGNMGVV 216 (429)
T ss_dssp EETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCH-HHHHHHHHHHG---GGEEEEEECSSBCTTSCB
T ss_pred ECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCH-HHHHHHHHhCC---CCEEEEEEcCCCCCCCcc
Confidence 4 22111 1111111 78 99999988531 145555554445555554
Q ss_pred C-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 L-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
. +.+.+++|.++|++||++||+||+|.++ . .+. .... . .+ +- ...+.||||++ + +|+|+||++
T Consensus 217 ~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~-~g~-~~~~-~---~~----~~---~~di~t~sK~~-~-~G~~iG~~~ 280 (429)
T 3k28_A 217 PPQPGFLEGLREVTEQNGALLIFDEVMTGF-R-VAY-NCGQ-G---YY----GV---TPDLTCLGKVI-G-GGLPVGAYG 280 (429)
T ss_dssp CCCTTHHHHHHHHHHHHTCEEEEECTTTTT-T-SST-THHH-H---HH----TC---CCSEEEECGGG-G-TTSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecccccc-c-cCc-chHH-H---Hh----CC---CCceehhhhhh-c-CCCCeEEEE
Confidence 4 6788999999999999999999999876 4 221 1111 1 11 11 11235799999 6 499999998
Q ss_pred ecCCChhHHHHHHhhh----hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----
Q 041151 288 MTNIPPKTVDEIYKIA----SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---- 359 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 359 (463)
+++++++.+.+.. ..+++.+.+.|.++.++++... ++++++++++++++.+.|+++
T Consensus 281 ---~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-------------~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (429)
T 3k28_A 281 ---GKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-------------PESYVEFERKAEMLEAGLRKAAEKH 344 (429)
T ss_dssp ---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---EcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5888888876532 2367889999999988875211 234555666666666666543
Q ss_pred CCcccccCCceeEEeeeccCCh--hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHH
Q 041151 360 RNVVCNFTEGAMYSFPQIRLPP--KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMP 437 (463)
Q Consensus 360 pg~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~ 437 (463)
+.+....+.|.++.| .+..+. .+... ..........+...|.++||.+.|+. ..++|+++..++++++
T Consensus 345 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~r~~~~~t~e~i~ 414 (429)
T 3k28_A 345 GIPHHINRAGSMIGI-FFTDEPVINYDAA--KSSNLQFFAAYYREMVEQGVFLPPSQ-------FEGLFLSTVHSDADIE 414 (429)
T ss_dssp TCCCEEEEETTEEEE-ESSSSCCCSHHHH--TTSCHHHHHHHHHHHHHTTEECCSST-------TSCBCCCTTCCHHHHH
T ss_pred CCCEEEEeeccEEEE-EEecCCccccccc--ccccHHHHHHHHHHHHHCCeEEecCC-------CCCEEEECCCCHHHHH
Confidence 444444555555544 222110 00000 00000011233445667899999863 1257998888999999
Q ss_pred HHHHHHHHHHHHH
Q 041151 438 AIMESFKKFNDEF 450 (463)
Q Consensus 438 ~~~~~l~~~l~~~ 450 (463)
+++++|+++++++
T Consensus 415 ~~l~~l~~~l~~~ 427 (429)
T 3k28_A 415 ATIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 160
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.93 E-value=4.8e-24 Score=215.12 Aligned_cols=312 Identities=11% Similarity=0.007 Sum_probs=197.8
Q ss_pred cHHHHHHHHHHhhhcC----CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTS----GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
|+.+++++.+.+.+.. .....|+.......+++...+++.+.+| +++++|++++| ++++..++.+++ ++||+
T Consensus 43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~~sG-s~a~~~a~~~~~-~~gd~ 118 (420)
T 3gbx_A 43 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQPHSG-SQANFAVYTALL-QPGDT 118 (420)
T ss_dssp CHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEecCc-HHHHHHHHHHhc-CCCCE
Confidence 8899999988774411 0112233333334444444355554445 45667777777 789999999997 89999
Q ss_pred EEEc---cC------cee-------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 158 VVLL---FH------TTW-------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 158 Vlvp---~g------~~~-------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
|+++ ++ ..+ .+..+.+|+ +.|++++++. ++++|++++|+||+ ..+ ++
T Consensus 119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l~ 187 (420)
T 3gbx_A 119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDY-DEMAKLAKEH-----KPKMIIGGFSAYSG--VVD---WA 187 (420)
T ss_dssp EEEEEEC------------CHHHHSEEEEEEECTTCSCCH-HHHHHHHHHH-----CCSEEEECCTTCCS--CCC---HH
T ss_pred EEecchhhcceeccchhhhhcccceeEEeccCCccCCcCH-HHHHHHHHhc-----CCeEEEEecCccCC--ccC---HH
Confidence 9997 21 110 234567999 9999999874 69999999999984 444 78
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh--
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-- 293 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-- 293 (463)
+|.++|++||++||+||+|....+..+.....+ .. ..|++.|+||++ + |.+.||++. ++
T Consensus 188 ~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-----------~~--~di~~~s~sK~~-~--g~~gg~~~~---~~~~ 248 (420)
T 3gbx_A 188 KMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV-----------PH--AHVVTTTTHKTL-A--GPRGGLILA---KGGD 248 (420)
T ss_dssp HHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST-----------TT--SSEEEEESSGGG-C--SCSCEEEEE---SSCC
T ss_pred HHHHHHHHcCCEEEEECCcchhceecccCCccc-----------cc--CCEEEeecccCC-C--CCCceEEEE---cCCc
Confidence 899999999999999999864433122111111 11 238899999998 3 666799984 65
Q ss_pred -hHHHHHHhhhh-hcc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-Cc
Q 041151 294 -KTVDEIYKIAS-IAL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-EG 369 (463)
Q Consensus 294 -~~~~~l~~~~~-~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g 369 (463)
++.+.+..... ... +++...+.++..++.. ....+.+++++++.++++++.+.|.+. |+.+..+ .+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 318 (420)
T 3gbx_A 249 EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKE---------AMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTE 318 (420)
T ss_dssp HHHHHHHHHHHC----CCCCHHHHHHHHHHHHH---------TTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS
T ss_pred HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHH---------HHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCC
Confidence 77777765443 222 3334444443333210 011334567888899999999999885 8887653 45
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---CCCCcEEEEEec------CCcCcHHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---KEGIFHLRTTIL------PAEEDMPAIM 440 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---~~~~~~lRis~~------~~~e~i~~~~ 440 (463)
++++|+.+..+ + .+...+...|+++||.+.|+..++. +-+...+||++. .+++++++++
T Consensus 319 ~~~~~~~~~~~-~-----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~ 386 (420)
T 3gbx_A 319 NHLFLLDLVDK-N-----------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELA 386 (420)
T ss_dssp SSEEEEECGGG-T-----------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred CeEEEEEcCCC-C-----------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHH
Confidence 66777554311 1 1345566778889999998322211 112235999997 2368899999
Q ss_pred HHHHHHHHH
Q 041151 441 ESFKKFNDE 449 (463)
Q Consensus 441 ~~l~~~l~~ 449 (463)
++|++++++
T Consensus 387 ~~l~~~l~~ 395 (420)
T 3gbx_A 387 GWMCDVLDN 395 (420)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 998887754
No 161
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.93 E-value=4.9e-25 Score=225.11 Aligned_cols=313 Identities=12% Similarity=0.059 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... ..|+...+..+++.++++++.+..+.. ..++|++|+|+++++..+++.... ..++.|++
T Consensus 79 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~ 153 (451)
T 3oks_A 79 APKVVEAVRSQVGDF----THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVENAVKIARSHTHKPAVVA 153 (451)
T ss_dssp CHHHHHHHHHHHTTC----SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhc----ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 789999999888762 346555566788888888887765422 357999999999999999987752 13467776
Q ss_pred c----cCce-------------------------e-cCC-C--c---cc--------ChHHHHHHHHHHHHhcCCceeEE
Q 041151 161 L----FHTT-------------------------W-KRQ-Q--I---GV--------LIINDLQQSVAQARSKGITVRAM 196 (463)
Q Consensus 161 p----~g~~-------------------------~-~~~-~--~---~~--------d~~~~l~~~l~~~~~~~~~~~~i 196 (463)
. +|.. . +.. . . +. ++ +.+++.+.... .++..++
T Consensus 154 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~l~~~~--~~~~~aa 230 (451)
T 3oks_A 154 FDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA-KRAITVIDKQI--GADNLAA 230 (451)
T ss_dssp ETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH-HHHHHHHHHHT--CGGGEEE
T ss_pred EcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH-HHHHHHHHhhc--CCCCEEE
Confidence 4 2111 0 100 0 0 11 23 55555555321 1134566
Q ss_pred EEECCCCCCc--cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcc
Q 041151 197 VIINPGNPTG--QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274 (463)
Q Consensus 197 ~l~~p~NPtG--~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 274 (463)
+++.|+|++| ...+.+.+++|.++|++||++||+||+|..+... +. ..... .+ +- ...+.||||+
T Consensus 231 vi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~-g~-~~~~~----~~----~~---~pdi~t~sK~ 297 (451)
T 3oks_A 231 VVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFART-GA-MFACE----HE----GI---DPDLIVTAKG 297 (451)
T ss_dssp EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSGGG----GG----TC---CCSEEEECGG
T ss_pred EEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcc-cc-chhhh----hc----CC---CCCeeeehhh
Confidence 6777877776 3446677999999999999999999999986542 22 11111 11 11 1123389999
Q ss_pred cCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 275 YWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353 (463)
Q Consensus 275 ~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (463)
+ +. |+|+||++ +++++++.+..... .+++.+++.|.++.++|+ .... +.+.++++++.+++.
T Consensus 298 l-~~-G~~iG~v~---~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~ 360 (451)
T 3oks_A 298 I-AG-GLPLSAVT---GRAEIMDSPHVSGLGGTYGGNPIACAAALATIE-----------TIES-EGLVARAQQIEKIMK 360 (451)
T ss_dssp G-GT-TSSCEEEE---EEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHH
T ss_pred h-hC-CcceEEEE---ECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHH
Confidence 9 64 99999998 58888888765543 578889999999988874 1111 134444555555555
Q ss_pred HHhh----cCCCcccccCCceeEEeeeccC-----ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcE
Q 041151 354 DGFN----SCRNVVCNFTEGAMYSFPQIRL-----PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFH 424 (463)
Q Consensus 354 ~~L~----~~pg~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~ 424 (463)
+.|. .+|.+....+.|. ++|+.+.- |... ....+...|.++||.+.|+..|+ ++
T Consensus 361 ~~L~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~Gv~v~~~~~~~-----~~ 423 (451)
T 3oks_A 361 DRLGRLQAEDDRIGDVRGRGA-MIAMELVKAGTTEPDAD-----------LTKALCAGAHAAGVIVLSCGTYG-----NV 423 (451)
T ss_dssp HHHHHHHHHCTTEEEEEEETT-EEEEEEBSTTSCCBCHH-----------HHHHHHHHHHHTTEECEEECTTS-----CE
T ss_pred HHHHHHHhhCCCeEEEEEeeE-EEEEEEecCccCCCCHH-----------HHHHHHHHHHhCCcEEecCCCCC-----CE
Confidence 5544 4455544444444 55544421 1110 22334455667899999976654 27
Q ss_pred EEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 425 LRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 425 lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
+||+++ .+++++++++++|++++++
T Consensus 424 iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 424 VRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999877 6889999999999988753
No 162
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.93 E-value=6.1e-25 Score=224.26 Aligned_cols=314 Identities=11% Similarity=0.072 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC----CC--
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG----EG-- 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~g-- 155 (463)
|+.+++++.+++... ..|....+..+.+.++++++.+.++ ...++|++|+|+++++..+++++. . +|
T Consensus 62 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~al~~~~-~~~~~~G~~ 134 (448)
T 3dod_A 62 KKELDDAIKKQLGKI----AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAMEIALKMAF-QYWKNIGKP 134 (448)
T ss_dssp CHHHHHHHHHHHTTC----SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc----cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHH-HHHHhhCCC
Confidence 789999999888762 2344445666888888888877754 345799999999999999999986 4 44
Q ss_pred --CEEEEc----cCcee--------------------------cCCCcc-----------cChHHHHHHHHHHHHhcCCc
Q 041151 156 --DGVVLL----FHTTW--------------------------KRQQIG-----------VLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 --d~Vlvp----~g~~~--------------------------~~~~~~-----------~d~~~~l~~~l~~~~~~~~~ 192 (463)
+.|+++ +|... ..+.+. .|+ ++|++.++... .+
T Consensus 135 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~ 210 (448)
T 3dod_A 135 EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCL-RELAQLLEEHH---EE 210 (448)
T ss_dssp TCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHH-HHHHHHHHHHG---GG
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHH-HHHHHHHHhCC---CC
Confidence 888886 22111 011111 137 88999887311 15
Q ss_pred eeEEEEECCC-CCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIINPG-NPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~p~-NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+++|+++.++ |++| .+++.+.+++|.++|++||++||+||+|..+... +... ... .++. .. .+.|
T Consensus 211 ~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~-g~~~-a~~----~~~~--~~-----di~t 277 (448)
T 3dod_A 211 IAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT-GKMF-ACE----HENV--QP-----DLMA 277 (448)
T ss_dssp EEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSSS-GGG----GGTC--CC-----SEEE
T ss_pred EEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcc-cchh-hhh----hcCC--CC-----CEEE
Confidence 6676666656 7887 5568888999999999999999999999986542 2211 111 1110 11 2347
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHh-------hh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYK-------IA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
|||++ + +| +|+||++ +++++++.+.+ .. ..+++.+++.|.++.++|+ ..+. +.+
T Consensus 278 ~sK~l-~-~G~~~ig~v~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~ 340 (448)
T 3dod_A 278 AGKGI-T-GGYLPIAVTF---ATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA-----------LFES-ENI 340 (448)
T ss_dssp ECGGG-G-TTSSCCEEEE---EEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTH
T ss_pred ecccc-c-CCcCceEEEE---ECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHH-----------HHhc-ccH
Confidence 89999 5 49 5999999 58899888875 33 2467888999999888874 1111 223
Q ss_pred HHHHHHHHHHHHHHh---hcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCC
Q 041151 342 LESLRRRARMMTDGF---NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L---~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~ 414 (463)
.++++++.+.+.+.| ..+|.+....+.| .++|+.+.-... +...... ...++ ..|.++||.+.|+.
T Consensus 341 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~l~~~Gv~~~~~~ 413 (448)
T 3dod_A 341 VEQVAEKSKKLHFLLQDLHALPHVGDIRQLG-FMCGAELVRSKE-----TKEPYPADRRIGYKVS-LKMRELGMLTRPLG 413 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTT-----TTBCCCGGGCHHHHHH-HHHHHTTEECCEET
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeee-EEEEEEEccCcc-----cccccchhhHHHHHHH-HHHHHCCcEEeccC
Confidence 444444444444444 4444444334444 455644431110 0000000 13444 44567799998861
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+++||+++ .+++++++++++|+++++++.
T Consensus 414 --------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 414 --------DVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp --------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 37999665 888999999999999998764
No 163
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.93 E-value=3.2e-25 Score=222.70 Aligned_cols=296 Identities=11% Similarity=0.039 Sum_probs=192.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE-cCCcHHHHHHHHHHHhcCCC-CEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL-TDGASKGVMQTLNCVIRGEG-DGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~~g-d~Vl 159 (463)
|+.+++++.+.........+.|+. ..++.+++.+.+.+.+|.+ ++++|++ |+|+++++..++.+++ ++| +.|.
T Consensus 52 ~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~~~l~-~~gv~~v~ 126 (398)
T 2fyf_A 52 RLEQLQTLTTTAAALFGTSHRQAP---VKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAAFGLI-DKRSLHLT 126 (398)
T ss_dssp CHHHHHGGGTTTTTTTTSCTTSHH---HHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHHHHTC-SSCEEEEE
T ss_pred CHHHHHHHhhcCCCccCcCcCCHH---HHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHHHHhc-CCCeEEEe
Confidence 888888876531110001122221 1234444555554445554 3579998 9999999999999997 888 5542
Q ss_pred Ec------------c--Ccee---cC-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 160 LL------------F--HTTW---KR-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 160 vp------------~--g~~~---~~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.+ . |.++ +. +++..+. + +++ ++++|++++|+||||.+++.+++.++
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-~-----i~~------~~~~v~~~~~~nptG~~~~~~~i~~~---- 190 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-Q-----TDP------SVDVIAWAHNETSTGVAVAVRRPEGS---- 190 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-C-----CCT------TCSEEEEESEETTTTEECCCCCCTTC----
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-c-----ccC------CCCEEEEeCcCCCcceecchHHhhhh----
Confidence 22 2 4444 22 2222222 1 222 79999999999999999997666554
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+|++||+|++|+.+.. ...+ .+ ..+++.|+||++ |++| ++||+++ ++++++.+.+
T Consensus 191 --~~~~vivD~a~~~~~~-----~~~~-----------~~--~di~~~s~sK~~-~~~g-g~g~l~~---~~~~~~~l~~ 245 (398)
T 2fyf_A 191 --DDALVVIDATSGAGGL-----PVDI-----------AE--TDAYYFAPQKNF-ASDG-GLWLAIM---SPAALSRIEA 245 (398)
T ss_dssp --C-CEEEEECTTTTTTS-----CCCG-----------GG--CSEEEECTTSTT-CSCS-SEEEEEE---CHHHHHHHHH
T ss_pred --cCCeEEEEeccccCCc-----ccCc-----------cc--CcEEEEecCccc-CCCC-ceEEEEE---CHHHHHHhhc
Confidence 8999999999986432 1122 11 237889999999 7775 5999984 8888887754
Q ss_pred hh---------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Q 041151 302 IA---------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 302 ~~---------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~ 357 (463)
.. . ...+++...+.++..+++ ...++ .++++++++++++++.+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~ 315 (398)
T 2fyf_A 246 IAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQID----------WLVGNGGLDWAVKRTADSSQRLYSWAQ 315 (398)
T ss_dssp HHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 123455556666666652 12223 56678889999999999999
Q ss_pred cCCCccccc--C--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 358 SCRNVVCNF--T--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 358 ~~pg~~~~~--~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
++||+.+.. | .+++++|+.+ |.+. +..++.. .|.++||.+++|. .. .+.+++|||++ .
T Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~l~~-~L~~~gI~v~~g~--~~-~~~~~iRis~~~~~ 379 (398)
T 2fyf_A 316 ERPYTTPFVTDPGLRSQVVGTIDF--VDDV----------DAGTVAK-ILRANGIVDTEPY--RK-LGRNQLRVAMFPAV 379 (398)
T ss_dssp HSTTEEESCCSGGGBCSSEEEEEE--CTTS----------CHHHHHH-HHHHTTCBCCSCC--TT-TCSSEEEEECCTTS
T ss_pred HcCCceeccCChhhcCCcEEEEEC--CCCC----------CHHHHHH-HHHHCCcEEecCc--cc-CCCCEEEEEecCCC
Confidence 988888763 4 3555778555 3221 2345444 4556699999873 22 12458999999 6
Q ss_pred CcCcHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~ 449 (463)
+++++++++++|++++++
T Consensus 380 t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 380 EPDDVSALTECVDWVVER 397 (398)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999988754
No 164
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.93 E-value=2.3e-24 Score=223.87 Aligned_cols=300 Identities=10% Similarity=-0.025 Sum_probs=205.9
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcE--EEcCCcHHHHHHHHHHHhcCCC--------CEEEEc--------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI--FLTDGASKGVMQTLNCVIRGEG--------DGVVLL-------- 161 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~~~g--------d~Vlvp-------- 161 (463)
...|....+...+++++++++.+.+|.+.+++++ ++|+|+++++..++.++. ++| |+|+++
T Consensus 128 ~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~~~ 206 (514)
T 3mad_A 128 PLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAAFD 206 (514)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTHHH
T ss_pred CcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchHHH
Confidence 3445444566788999999998888877666788 999999999999999997 676 899997
Q ss_pred -----cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ ....+.+|+ +.|++++++ ++++|++++|+||||.+.+ +++|.++|++||++||+|+
T Consensus 207 ~~~~~~G~~v~~v~~~~~~~~d~-~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 207 KAAQYFGIKLVRTPLDADYRADV-AAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHHHHTCEEEEECBCTTSCBCH-HHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCeeEEeeeCCCCCCCH-HHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 56655 344678999 999999987 8999999999999999988 6788888999999999999
Q ss_pred cccccccC----CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-----
Q 041151 233 VYQQNIYQ----DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA----- 303 (463)
Q Consensus 233 ay~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~----- 303 (463)
+|..+.+. .+.+...+.. ...+..+++.|++|+++ ++.++||+++ .++.+........
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~---------~~~g~d~~~~s~~K~l~--~~~~~g~~~~--~~~~~~~~~~~~~~~~~~ 343 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDF---------RLEGVTSVSADTHKYGY--GAKGTSVILY--RRPDLLHYQYFIAADWPG 343 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCST---------TSTTCCEEEECTTTTTC--CCSSCEEEEE--SSHHHHTTTCEEESSCTT
T ss_pred ccccccchhHHhcCCCCCcccc---------cCCCCcEEEECchhccC--CCCCeEEEEE--eCHHHhccccccccccCC
Confidence 99876431 0110111110 11224588899999863 6788999986 3443322111000
Q ss_pred ----hh--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeec
Q 041151 304 ----SI--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377 (463)
Q Consensus 304 ----~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~ 377 (463)
.. ..+.+.....++.+++. .+ .....+++.++..++++++.+.|+++||+.+..+..+ ++|+..
T Consensus 344 ~~~~~~~~~gs~~~~~~~a~~aal~-------~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~ 413 (514)
T 3mad_A 344 GLYFSPTFAGSRPGALSATAWAAML-------SL--GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVAS 413 (514)
T ss_dssp CSEEESSSCSSCCHHHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEEC
T ss_pred CcccCCccCCCCchHHHHHHHHHHH-------HH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeC
Confidence 00 11222222222222221 00 1223456788888999999999999889988766655 444322
Q ss_pred cCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 378 RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+. .+..++ .+.|.++||.+ +|..|. .++|+++. .+++++++++++|+++++++.++
T Consensus 414 --~~-----------~~~~~l-~~~L~~~Gi~v-~g~~~~-----~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 414 --DE-----------LNIYQV-MEEMAGRGWRL-NGLHRP-----PAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp --SS-----------SCHHHH-HHHHHTTTCBC-EEETTT-----TEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred --CC-----------CCHHHH-HHHHHhcCCEe-ccCCCC-----CeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 21 123344 45566779988 544432 36999998 45699999999999999887754
No 165
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.93 E-value=6.7e-25 Score=223.32 Aligned_cols=304 Identities=10% Similarity=0.049 Sum_probs=201.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~ 153 (463)
++.+++++.+.+.........|. .....++++.+++++ | .++|++++|+++++..+++++.. +
T Consensus 94 ~p~v~~Ai~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~ 164 (439)
T 2oat_A 94 HPKIVNALKSQVDKLTLTSRAFY-NNVLGEYEEYITKLF----N----YHKVLPMNTGVEAGETACKLARKWGYTVKGIQ 164 (439)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSE-ESSHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHhcCcccCccC-CHHHHHHHHHHHHhc----C----CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCC
Confidence 89999999988876311111232 223456666666665 2 57999999999999999998641 2
Q ss_pred CC-CEEEEc---c-Ccee-----cC------------CC-c---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 154 EG-DGVVLL---F-HTTW-----KR------------QQ-I---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 154 ~g-d~Vlvp---~-g~~~-----~~------------~~-~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
+| +.|+++ + |... .. .+ . -.|+ +.|++.+++. ++++|+++..+|++|.
T Consensus 165 ~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~-~~le~~l~~~-----~~~~vi~ep~~~~~G~ 238 (439)
T 2oat_A 165 KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDL-PALERALQDP-----NVAAFMVEPIQGEAGV 238 (439)
T ss_dssp TTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCH-HHHHHHTTST-----TEEEEEECSSBTTTTS
T ss_pred CCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCH-HHHHHHhCCC-----CEEEEEEECCCCCCCC
Confidence 56 788875 2 2111 00 00 0 1378 9999988521 6777665544677896
Q ss_pred -CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEE
Q 041151 208 -CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGY 285 (463)
Q Consensus 208 -~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~ 285 (463)
.++.+.+++|.++|++||+++|+||+|..+... +.. ..+. .++. .. . + .||||++ + +| +|+||
T Consensus 239 ~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~-g~~-~~~~----~~~~--~~--D-i--~t~sK~l-~-~G~~~~G~ 303 (439)
T 2oat_A 239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLART-GRW-LAVD----YENV--RP--D-I--VLLGKAL-S-GGLYPVSA 303 (439)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSS-SGGG----GGTC--CC--S-E--EEECGGG-G-TTSSCCEE
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCccC-Ccc-hhHH----HhCC--CC--c-E--EEecccc-c-CCCCCeEE
Confidence 568899999999999999999999999765432 211 1111 1110 11 1 2 3999999 5 58 99999
Q ss_pred EEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 286 FEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
+++ ++++++.+.... ..+++.+++.+.++.++++ ...+ +.+.++++++++++.+.|+++ ++.+
T Consensus 304 v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~ 367 (439)
T 2oat_A 304 VLC---DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALE-----------VLEE-ENLAENADKLGIILRNELMKL-PSDV 367 (439)
T ss_dssp EEE---CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHTTS-CTTT
T ss_pred EEE---CHHHHhccCCCCcccCCCcCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 994 888877775533 2467778888888877763 2221 246778888999999999887 4443
Q ss_pred c--cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 365 N--FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 365 ~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
. .+..+.++|+.+.-..+ .+..+++. .|.++||.+.|+ +.+++|++++ .+++++++++
T Consensus 368 ~~~~~~~g~~~~v~l~~~~~----------~~~~~l~~-~l~~~Gv~v~~~-------~~~~iRi~~~~~~t~e~i~~~l 429 (439)
T 2oat_A 368 VTAVRGKGLLNAIVIKETKD----------WDAWKVCL-RLRDNGLLAKPT-------HGDIIRFAPPLVIKEDELRESI 429 (439)
T ss_dssp EEEEEEETTEEEEEECCCSS----------CCHHHHHH-HHHHTTEECCBS-------SSSEEEECCCTTCCHHHHHHHH
T ss_pred cEEEEeeeeEEEEEEecCcc----------HHHHHHHH-HHHHCCeEEecC-------CCCEEEEECccCCCHHHHHHHH
Confidence 1 12234566655531100 12344444 455689999983 2348999877 7899999999
Q ss_pred HHHHHHHHH
Q 041151 441 ESFKKFNDE 449 (463)
Q Consensus 441 ~~l~~~l~~ 449 (463)
++|++++++
T Consensus 430 ~~l~~~l~~ 438 (439)
T 2oat_A 430 EIINKTILS 438 (439)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988753
No 166
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=1.1e-24 Score=218.02 Aligned_cols=295 Identities=12% Similarity=0.115 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
|+.+++++.+.+.+. .|.+..+..++|++++++++ .+++++|+|+++++..++.++ + ++||+|++
T Consensus 19 ~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~~~-~~gd~Vl~ 84 (393)
T 1mdo_A 19 GAEELAAVKTVLDSG-----WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGI-GEGDEVIT 84 (393)
T ss_dssp CHHHHHHHHHHHHHT-----CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC-----CcCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHcCC-CCCCEEEe
Confidence 778888888888762 23445678899999999985 248999999999999999999 7 89999999
Q ss_pred c-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ + .+++.+|+ +.|++.+++ ++++|+++ ||||.+.+ +++|.++|+
T Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~ 151 (393)
T 1mdo_A 85 PSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTP-EHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGE 151 (393)
T ss_dssp ESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCH-HHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHH
T ss_pred CCCccHhHHHHHHHCCCEEEEEeccCCcCCCCH-HHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHH
Confidence 7 56666 2 23467999 999999876 78998876 48999876 778888899
Q ss_pred hCCeEEEeccccccc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHH
Q 041151 223 QENLVLLGDEVYQQN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
++|++||+|++|+.+ .+ .+. .+ .. +++++.|+| |++ +|.|+||++. .++++++.+
T Consensus 152 ~~~~~li~D~a~~~g~~~-~~~---~~-----------~~--~d~~~~S~~k~K~l---~~~~~g~~~~--~~~~~~~~l 209 (393)
T 1mdo_A 152 RYGIPVIEDAAHATGTSY-KGR---HI-----------GA--RGTAIFSFHAIKNI---TCAEGGIVVT--DNPQFADKL 209 (393)
T ss_dssp HHTCCBCEECTTCTTCEE-TTE---ET-----------TS--SSEEEEECCTTSSS---CSSSCEEEEE--SCHHHHHHH
T ss_pred HcCCeEEEECccccCCeE-CCe---ec-----------CC--CCeEEEeCCCCCcc---ccccceEEEe--CCHHHHHHH
Confidence 999999999999964 33 211 11 11 348889999 655 5569999995 247888888
Q ss_pred Hhhhhhccc-------------------------CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 300 YKIASIALS-------------------------PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 300 ~~~~~~~~~-------------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
......... .+.+...++... ++.+++..++.+++++++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--------------l~~~~~~~~~~~~~~~~l~~ 275 (393)
T 1mdo_A 210 RSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ--------------LQKLDALNARRAAIAAQYHQ 275 (393)
T ss_dssp HHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHH--------------HHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 765431111 122222221111 22234455566677888899
Q ss_pred HhhcCCCccccc-C-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC-----------
Q 041151 355 GFNSCRNVVCNF-T-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG----------- 417 (463)
Q Consensus 355 ~L~~~pg~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~----------- 417 (463)
.|.+++ +.+.. + .+++++|+.+ +... .+ .+..+ +.+.|.++||.+.+|..+.
T Consensus 276 ~L~~~~-~~~~~~~~~~~~~~~~~~~v~~--~~~~------~~-~~~~~-l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 276 AMADLP-FQPLSLPSWEHIHAWHLFIIRV--DEAR------CG-ITRDA-LMASLKTKGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp HHHTSS-CEECCCCSSCEECCCSCEEEEC--CHHH------HS-SCHHH-HHHHHHHTTBCCBCCCCCGGGSHHHHHHST
T ss_pred HHhcCC-cccccCCCCCCCceeEEEEEEe--cccc------cc-cCHHH-HHHHHHhCCCCcccccCccccChhhhccCC
Confidence 998874 66542 2 3456677544 3200 00 02334 4455677899999987541
Q ss_pred ---CCC----CCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 418 ---QKE----GIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 418 ---~~~----~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+. ....+||++. .+++|+++++++|+++++..
T Consensus 345 ~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 345 TLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 100 1347999998 78999999999998876554
No 167
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=1.3e-24 Score=219.26 Aligned_cols=294 Identities=12% Similarity=0.064 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHhhhcCCCCC---ccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-c---
Q 041151 82 PADAIARAKHYLSLTSGGLG---AYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-R--- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~---~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~--- 152 (463)
|+.+++++.+.+........ .|+. .....++++.++++++ +++++|++|+|+++++..++.+++ .
T Consensus 41 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~al~~al~~~~~~~~~ 114 (416)
T 1qz9_A 41 PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG------ARDGEVVVTDTTSINLFKVLSAALRVQAT 114 (416)
T ss_dssp BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT------CCTTSEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcC------CCcccEEEeCChhHHHHHHHHhhcccccc
Confidence 77889999888765211110 1111 1233556666666653 567899999999999998888763 1
Q ss_pred -CCCCE-EEEc---c----------------CceecCCCcccC-hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 153 -GEGDG-VVLL---F----------------HTTWKRQQIGVL-IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 153 -~~gd~-Vlvp---~----------------g~~~~~~~~~~d-~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
++||. |+++ + |.++. .++ + +.|++++++ ++++|++++|+||||.+++
T Consensus 115 ~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~----~v~~~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~ 183 (416)
T 1qz9_A 115 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR----LVDSP-EELPQAIDQ------DTAVVMLTHVNYKTGYMHD 183 (416)
T ss_dssp HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE----EESSG-GGHHHHCST------TEEEEEEESBCTTTCBBCC
T ss_pred cCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEE----EeCcH-HHHHHHhCC------CceEEEEeccccCcccccC
Confidence 58886 4553 1 44430 011 5 888888876 7999999999999999998
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEec
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMT 289 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~ 289 (463)
+++|.++|+++|++||+|++|+... . ..++..+ + ..+++.|+||++. +|.++ ||+++
T Consensus 184 ---l~~i~~l~~~~~~~li~D~a~~~g~----~-~~~~~~~--------~---~d~~~~s~~K~l~--~g~~~~g~l~~- 241 (416)
T 1qz9_A 184 ---MQALTALSHECGALAIWDLAHSAGA----V-PVDLHQA--------G---ADYAIGCTYKYLN--GGPGSQAFVWV- 241 (416)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTTTTT----S-CCCHHHH--------T---CSEEEECSSSTTC--CCTTCCCEEEE-
T ss_pred ---HHHHHHHHHHcCCEEEEEccccccC----c-CCChhhc--------C---CCEEEecCcccCC--CCCCCeEEEEE-
Confidence 6788889999999999999998421 1 1233222 2 2378899999873 57777 99995
Q ss_pred CCChhHHHHHHhhh-----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHH
Q 041151 290 NIPPKTVDEIYKIA-----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILES 344 (463)
Q Consensus 290 ~~~~~~~~~l~~~~-----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 344 (463)
++++++.+.... . ...+.+...+.++.++++ ... ...++++++
T Consensus 242 --~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~ 309 (416)
T 1qz9_A 242 --SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLD----------VFAQTDMASLRRK 309 (416)
T ss_dssp --CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHH----------HHTTSCHHHHHHH
T ss_pred --CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHH----------HHHhcCHHHHHHH
Confidence 777766554321 1 122345556665555542 111 124567788
Q ss_pred HHHHHHHHHHHhhcC-C--CcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 345 LRRRARMMTDGFNSC-R--NVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~-p--g~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
++++++++.+.|++. | |+.+..+. .+.++|+.+ +. ..++. +.|.++||.+...
T Consensus 310 ~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-------------~~~l~-~~l~~~gi~~~~~---- 369 (416)
T 1qz9_A 310 SLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH--PE-------------GYAVI-QALIDRGVIGDYR---- 369 (416)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC--TT-------------HHHHH-HHHHTTTEECEEE----
T ss_pred HHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEec--CC-------------HHHHH-HHHHhCCcEeccC----
Confidence 899999999999885 6 88877664 244566443 31 23444 4566789987531
Q ss_pred CCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 418 ~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~ 449 (463)
+.+++||+++ .+++++++++++|++++++
T Consensus 370 ---~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 370 ---EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp ---TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 2348999996 5899999999999999875
No 168
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.93 E-value=1.1e-24 Score=223.87 Aligned_cols=319 Identities=15% Similarity=0.093 Sum_probs=212.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
|+.+++++.+++... .+.|+ ..+..+++.++++++.+.++ ...++|++++|+++++..+++.+. . +
T Consensus 72 ~p~v~~A~~~~l~~~---~~~~~-~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Aik~a~-~~~~~~g~~ 144 (476)
T 3i5t_A 72 RREIVDAMAHQAMVL---PYASP-WYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTAVDSALRFSE-FYNNVLGRP 144 (476)
T ss_dssp CHHHHHHHHHHHHHC---CCCCT-TTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cCccc-CccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHHHHHHHHHHH-HHHHhcCCC
Confidence 789999999988762 12222 24567889999999987654 345799999999999999999885 3 3
Q ss_pred -CCEEEEc----cCcee-------------------------c-CCC---cccC--------hHHHHHHHHHHHHhcCCc
Q 041151 155 -GDGVVLL----FHTTW-------------------------K-RQQ---IGVL--------IINDLQQSVAQARSKGIT 192 (463)
Q Consensus 155 -gd~Vlvp----~g~~~-------------------------~-~~~---~~~d--------~~~~l~~~l~~~~~~~~~ 192 (463)
++.|++. +|... + ... ++.| + +.|++.++.... .+
T Consensus 145 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~le~~i~~~~~--~~ 221 (476)
T 3i5t_A 145 QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLV-QEFEDRIESLGP--DT 221 (476)
T ss_dssp TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHH-HHHHHHHHHHCG--GG
T ss_pred CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHH-HHHHHHHHhcCC--CC
Confidence 4577764 22111 0 000 0112 6 889988874211 15
Q ss_pred eeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC
Q 041151 193 VRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV 271 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 271 (463)
+++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|..+... +. ..... ..+++ .. . +.++
T Consensus 222 ~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~-G~-~~~~~---~~~~v--~p--d---i~t~ 289 (476)
T 3i5t_A 222 IAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC-GE-WFASE---KVFGV--VP--D---IITF 289 (476)
T ss_dssp EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SCHHH---HTTCC--CC--S---EEEE
T ss_pred EEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc-cC-ceeee---cccCC--Cc--c---hhhh
Confidence 778877777888885 889999999999999999999999999986442 22 11111 02211 12 1 2368
Q ss_pred CcccCCCCC-ceeEEEEecCCChhHHHHHHhh-------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 272 SKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 272 SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
||++ + .| +|+|+++ +++++++.+... . ..+++.+++++.++.++|+ ..++ +.+.
T Consensus 290 sK~l-~-~G~~plg~v~---~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~-----------~~~~-~~~~ 352 (476)
T 3i5t_A 290 AKGV-T-SGYVPLGGLA---ISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE-----------LMER-EGIV 352 (476)
T ss_dssp CGGG-G-TTSSCCEEEE---ECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHH
T ss_pred hhhh-c-CCCcCeEEEE---ECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHH-----------HHHh-HHHH
Confidence 9999 5 48 9999999 589999988753 2 2467889999999988873 2221 3456
Q ss_pred HHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCC
Q 041151 343 ESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f 416 (463)
++++++.+++.+.|+++ |.+....+.|.|+ ++.+.-.... ...+.+ ....+...|.++||.+.|.
T Consensus 353 ~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~-~i~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--- 423 (476)
T 3i5t_A 353 DQAREMADYFAAALASLRDLPGVAETRSVGLVG-CVQCLLDPTR-----ADGTAEDKAFTLKIDERCFELGLIVRPL--- 423 (476)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE-EEEECCC----------CCHHHHHHHHHHHHHHHHTTEECEEE---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEecCcee-EEEEecCccc-----cccccchhHHHHHHHHHHHHCCCEEEec---
Confidence 66777777777777654 4455555666554 4333311100 000000 1222344556779999983
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+ +++||++. .+++++++++++|+++++++.++
T Consensus 424 g-----~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 424 G-----DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp T-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 48999955 89999999999999999987664
No 169
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.93 E-value=1.1e-24 Score=223.59 Aligned_cols=320 Identities=15% Similarity=0.097 Sum_probs=207.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+++++.+++... ...|....+..+.+.++++.+.+..+ ...++|++++|+++++..+++.+. .
T Consensus 73 ~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~~aik~a~-~~~~~~g~~ 146 (472)
T 3hmu_A 73 RDELAEVAARQMREL---PYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEANDTNIRMVR-TYWQNKGQP 146 (472)
T ss_dssp CHHHHHHHHHHHHHC---SCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHHH-HHHHhcCCC
Confidence 789999999988763 22344333445677777777766543 356799999999999999999886 4
Q ss_pred CCCEEEEc----cCcee------------------------c-CCCcc----cC--------hHHHHHHHHHHHHhcCCc
Q 041151 154 EGDGVVLL----FHTTW------------------------K-RQQIG----VL--------IINDLQQSVAQARSKGIT 192 (463)
Q Consensus 154 ~gd~Vlvp----~g~~~------------------------~-~~~~~----~d--------~~~~l~~~l~~~~~~~~~ 192 (463)
+++.|++. +|... + ...+. .| + +.|++.++.... .+
T Consensus 147 ~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~-~~le~~i~~~~~--~~ 223 (472)
T 3hmu_A 147 EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARA-RELEEAILELGE--NR 223 (472)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHH-HHHHHHHHHHCG--GG
T ss_pred CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHH-HHHHHHHHhcCC--CC
Confidence 45677775 22111 0 01011 22 6 888888874211 15
Q ss_pred eeEEEEECCCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC
Q 041151 193 VRAMVIINPGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV 271 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 271 (463)
+.+|+++.++|++|.+. +.+.+++|.++|++||+++|+||+|..+... +. .... . .+++ .. . +.+|
T Consensus 224 ~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~-G~-~~a~-~---~~~v--~p--d---i~t~ 290 (472)
T 3hmu_A 224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRT-GN-WFGT-Q---TMGI--RP--H---IMTI 290 (472)
T ss_dssp EEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SCHH-H---HHTC--CC--S---EEEE
T ss_pred EEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCccc-Cc-cchh-H---HhCC--CC--c---eeee
Confidence 66666656677777655 8888999999999999999999999986442 21 1112 1 1211 12 1 2368
Q ss_pred CcccCCCCCceeEEEEecCCChhHHHHHHhh--h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHH-H
Q 041151 272 SKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLR-R 347 (463)
Q Consensus 272 SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 347 (463)
||++ +..|+|+||++ +++++++.+... . ..+++.++++|.++.++|+ ..++ +.+.++++ +
T Consensus 291 sK~l-~gg~~plG~v~---~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~-----------~~~~-~~~~~~~~~~ 354 (472)
T 3hmu_A 291 AKGL-SSGYAPIGGSI---VCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLR-----------ILEE-ENILDHVRNV 354 (472)
T ss_dssp CGGG-TTTSSCCEEEE---EEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHT
T ss_pred chhh-hcCCcceEEEE---ECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHH-----------HHHH-hHHHHHHHHH
Confidence 9998 64559999999 589999988321 2 2467889999999988873 1211 23455566 6
Q ss_pred HHHHHHHHhhc---CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCCCCCCCC
Q 041151 348 RARMMTDGFNS---CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGSGFGQKE 420 (463)
Q Consensus 348 ~~~~l~~~L~~---~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~~f~~~~ 420 (463)
+.+++.+.|++ .|++..+.+.|.++.+ .+.-... +...+.. ....+...|.++||.++|+.
T Consensus 355 ~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i-~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------ 422 (472)
T 3hmu_A 355 AAPYLKEKWEALTDHPLVGEAKIVGMMASI-ALTPNKA-----SRAKFASEPGTIGYICRERCFANNLIMRHVG------ 422 (472)
T ss_dssp HHHHHHHHHHGGGGSTTEEEEEEETTEEEE-EECSCGG-----GTCCBSSCTTHHHHHHHHHHHHTTBCCEEET------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCceEEE-EEecCcc-----ccccccchhHHHHHHHHHHHHHCCcEEEecC------
Confidence 66666666654 3555555666665543 3321110 0000000 12233455667899999852
Q ss_pred CCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 421 GIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 421 ~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+++||++. .+++++++++++|+++++++.++
T Consensus 423 --~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~~ 455 (472)
T 3hmu_A 423 --DRMIISPPLVITPAEIDEMFVRIRKSLDEAQAE 455 (472)
T ss_dssp --TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48999955 89999999999999999886543
No 170
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.93 E-value=4.2e-24 Score=214.98 Aligned_cols=274 Identities=12% Similarity=0.108 Sum_probs=182.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Cc
Q 041151 102 AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HT 164 (463)
Q Consensus 102 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~ 164 (463)
.|+. .+..+||++++++++ .. +.|++++| ++++..++. ++ ++||+|+++ + |.
T Consensus 63 r~~~-p~~~~l~~~la~~~g------~~-~~i~~~sG-~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 63 RSGN-PTRNCLEKAVAALDG------AK-YCLAFASG-LAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp ---C-HHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred CCCC-chHHHHHHHHHHHhC------CC-cEEEECCH-HHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 4443 356799999999985 22 67777777 589999999 87 899999997 2 22
Q ss_pred ee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC-eEEEecccccccccCCC
Q 041151 165 TW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN-LVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 165 ~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~-~~vi~Deay~~~~~~~~ 242 (463)
++ ..+. -|+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++| +++|+|++|..+.+.
T Consensus 132 ~v~~v~~--~d~-~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~-- 197 (403)
T 3cog_A 132 KISFVDC--SKI-KLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ-- 197 (403)
T ss_dssp EEEEECT--TSH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC--
T ss_pred EEEEECC--CCH-HHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC--
Confidence 33 1110 178 999998876 8999999999999999997 788888999999 999999999986541
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHh
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLM 320 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~ 320 (463)
. ++ + .+..|+++|+||++ +.+| +|+||+++ .++++++.+..... .+...+.+.+.++...
T Consensus 198 ~---~~-----------~-~~~div~~S~sK~~-~g~~~~~~G~v~~--~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~ 259 (403)
T 3cog_A 198 R---PL-----------A-LGADISMYSATKYM-NGHSDVVMGLVSV--NCESLHNRLRFLQNSLGAVPSPIDCYLCNRG 259 (403)
T ss_dssp C---TT-----------T-TTCSEEEEETTTTT-TCSSCCCCEEEEE--CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred C---cc-----------c-cCCeEEEEcChhhc-cCCCCCeEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 1 11 1 12458999999999 5555 57999995 35788888887665 4555678888777777
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhcCCCcccccCC----ceeEEeeeccCChh
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDG--------------FNSCRNVVCNFTE----GAMYSFPQIRLPPK 382 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------L~~~pg~~~~~~~----g~~~~~~~~~~~~~ 382 (463)
++. .. ...++..++...+.+. |.++||+.+..++ |+++.| .++ .
T Consensus 260 l~~-------l~-------~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~l~--~- 321 (403)
T 3cog_A 260 LKT-------LH-------VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTF-YIK--G- 321 (403)
T ss_dssp HTT-------HH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE-EES--S-
T ss_pred hhH-------HH-------HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEE-Eec--C-
Confidence 642 11 1112222333233333 4444566655443 777776 232 1
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeC---CC----------CCCC----------CCCCcEEEEEecCCcCcHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVP---GS----------GFGQ----------KEGIFHLRTTILPAEEDMPAI 439 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p---g~----------~f~~----------~~~~~~lRis~~~~~e~i~~~ 439 (463)
..+.+..++.+.||.++. |+ .+.. .-..+++|||++. ++.++.
T Consensus 322 ------------~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~d~ 387 (403)
T 3cog_A 322 ------------TLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL--EDEEDL 387 (403)
T ss_dssp ------------CHHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHH
T ss_pred ------------CHHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHH
Confidence 113355677888886543 21 1110 0114689999996 566777
Q ss_pred HHHHHHHHHHH
Q 041151 440 MESFKKFNDEF 450 (463)
Q Consensus 440 ~~~l~~~l~~~ 450 (463)
++.|.+++++.
T Consensus 388 i~~l~~al~~~ 398 (403)
T 3cog_A 388 LEDLDQALKAA 398 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88887777654
No 171
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.93 E-value=5.2e-24 Score=217.36 Aligned_cols=311 Identities=13% Similarity=0.116 Sum_probs=204.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC-CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS-RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------- 153 (463)
|+.+++++.+.+.... |... .+..+++.++++.+.+..+ .++++|++|+|+++++..+++++. .
T Consensus 68 ~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~-~~~~~~g~ 139 (449)
T 3a8u_X 68 RKEIQEAVAKQLSTLD-----YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVR-AYWRLKGQ 139 (449)
T ss_dssp CHHHHHHHHHHTTTCS-----CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTC
T ss_pred CHHHHHHHHHHHHhCC-----CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHH-HHHHhcCC
Confidence 7889999988887621 2221 3344566777777765533 467899999999999999999875 4
Q ss_pred -CCCEEEEc---c-C------------------------cee-c-CCCc-----ccC--------hHHHHHHHHHHHHhc
Q 041151 154 -EGDGVVLL---F-H------------------------TTW-K-RQQI-----GVL--------IINDLQQSVAQARSK 189 (463)
Q Consensus 154 -~gd~Vlvp---~-g------------------------~~~-~-~~~~-----~~d--------~~~~l~~~l~~~~~~ 189 (463)
++|.|+++ + | +.. + ...+ ++| + +.|++.+++...
T Consensus 140 ~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~-~~le~~l~~~~~- 217 (449)
T 3a8u_X 140 ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALA-DELLKLIELHDA- 217 (449)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHH-HHHHHHHHHHCG-
T ss_pred CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHH-HHHHHHHHhcCC-
Confidence 67888885 1 1 111 1 1111 246 8 999999875200
Q ss_pred CCceeEEEEECC-CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEE
Q 041151 190 GITVRAMVIINP-GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVS 267 (463)
Q Consensus 190 ~~~~~~i~l~~p-~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (463)
.++++|+ ++| +||||. ..+.+.+++|.++|++||++||+||+|..+... +. ...+... +. .. . +
T Consensus 218 -~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~-g~-~~~~~~~--~~----~~--d-i- 283 (449)
T 3a8u_X 218 -SNIAAVF-VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT-GS-MFGADSF--GV----TP--D-L- 283 (449)
T ss_dssp -GGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSHHHHH--TC----CC--S-E-
T ss_pred -CCEEEEE-EcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc-Cc-chhhhhc--CC----CC--C-E-
Confidence 1566654 555 577996 667899999999999999999999999865431 21 1122111 11 12 2 2
Q ss_pred EecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh---------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 268 FHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI---------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 268 ~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~---------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
.|+||++ + +| +|+||+++ ++++++.+... . ..+++.+.+.+.++.++|+ ...
T Consensus 284 -~s~sK~l-~-~G~~~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~-----------~~~ 346 (449)
T 3a8u_X 284 -MCIAKQV-T-NGAIPMGAVIA---STEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALC-----------LLQ 346 (449)
T ss_dssp -EEECGGG-G-TTSSCCEEEEE---EHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHH-----------HHH
T ss_pred -EEEcccc-c-CCCCceEEEEE---CHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHH-----------HHH
Confidence 2899999 5 47 99999984 78888888764 1 2356678888888877763 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCN--FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
+ +.+.++++++++++.+.|++++++... .+..++++|+.+.-..... ..+..++... |.++||.+.|+.
T Consensus 347 ~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~-------~~~~~~~~~~-l~~~Gv~v~~~g 417 (449)
T 3a8u_X 347 K-ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA-------IVRPFEAGMA-LWKAGFYVRFGG 417 (449)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS-------SHHHHHHHHH-HHHHTEECEEET
T ss_pred h-cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc-------cccHHHHHHH-HHHCCcEEecCC
Confidence 1 246677888888888888775323221 1234567776554211000 0001244444 556799999961
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++||++. .+++++++++++|+++++++
T Consensus 418 --------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 418 --------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp --------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 37999965 88999999999999988653
No 172
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=1e-24 Score=218.47 Aligned_cols=308 Identities=13% Similarity=0.088 Sum_probs=204.1
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEV 116 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~i 116 (463)
.++++++.|.|.. ++.+.+++.+.+.. ..|+ +..+..++|+++
T Consensus 22 ~~~~~l~~~~p~~-------------------------------~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~~l 65 (391)
T 3dr4_A 22 SDLPRISVAAPRL-------------------------------DGNERDYVLECMDT-----TWISSVGRFIVEFEKAF 65 (391)
T ss_dssp ------CCCCCCC-------------------------------CSSHHHHHHHHHHH-----TCCSSCSHHHHHHHHHH
T ss_pred CCCceeccCCCCC-------------------------------CHHHHHHHHHHHHc-----CCccCCChHHHHHHHHH
Confidence 4588999998885 66788888887776 2455 566889999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc-------------cCcee-----cCCCcccChHH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVLL-------------FHTTW-----KRQQIGVLIIN 177 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp-------------~g~~~-----~~~~~~~d~~~ 177 (463)
+++++ .+++++++|+++++..++.++ + ++||+|+++ .|.++ ..+.+.+|+ +
T Consensus 66 a~~~~--------~~~~i~~~~gt~al~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~ 135 (391)
T 3dr4_A 66 ADYCG--------VKHAIACNNGTTALHLALVAMGI-GPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDA-A 135 (391)
T ss_dssp HHHHT--------CSEEEEESSHHHHHHHHHHHHTC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCG-G
T ss_pred HHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCH-H
Confidence 99985 237888888899999999999 7 899999997 56665 225678999 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.|++.+++ ++++|+ |+||||...+ +++|.++|+++|++||+|++|+.+....+.+... +
T Consensus 136 ~l~~~~~~------~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~-------~-- 194 (391)
T 3dr4_A 136 KLEALITP------RTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS-------L-- 194 (391)
T ss_dssp GSGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS-------S--
T ss_pred HHHHhcCC------CceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCeeecc-------c--
Confidence 99998876 788887 6789999877 7778888999999999999998643211111111 0
Q ss_pred CCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHHhhhhhccc-------------CChHHHHHHHHhcC
Q 041151 258 PFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-------------PNVPAQIFMGLMVN 322 (463)
Q Consensus 258 ~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~q~~~~~~l~ 322 (463)
. .+.+.||| |++ +|.++||++. .++++.+.+......... .......++....
T Consensus 195 --~----di~~~S~s~~K~l---~~g~gg~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~- 262 (391)
T 3dr4_A 195 --G----DCATFSFFGNAII---TTGEGGMITT--NDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLA- 262 (391)
T ss_dssp --S----SEEEEECBTTSSS---CCBSCEEEEE--SCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHH-
T ss_pred --C----CEEEEECCCCCcC---CcCCeEEEEE--CCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHH-
Confidence 1 16777877 766 4567999986 567788887765531111 1112222222221
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC------Ccee-EEeeeccCChhhHHHHhhcCCCCh
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT------EGAM-YSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~------~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
....+++..++.+++.+++.+.|.++ |+.+..+ ..++ .+++.++-..+. +
T Consensus 263 -----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~ 319 (391)
T 3dr4_A 263 -----------QLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLST-----------T 319 (391)
T ss_dssp -----------HHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSS-----------C
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccch-----------h
Confidence 12234456667778888899999888 7776544 1222 234333210011 2
Q ss_pred HHHHHHHHHhcCeEeeCCCCC---CC----------C----CCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGF---GQ----------K----EGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f---~~----------~----~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
.+.+...|.++||.++++... .. + -....+||++. .+++|+++++++|++++
T Consensus 320 ~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 320 RDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 333455677789999987521 00 0 01347999998 79999999999998654
No 173
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.92 E-value=1.4e-23 Score=209.87 Aligned_cols=270 Identities=16% Similarity=0.127 Sum_probs=188.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KR 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~ 168 (463)
.+..+++++++++++ .+ +.|++++| ++++..++.+++ ++||.|+++ + |.++ .-
T Consensus 52 ~~~~~l~~~la~~~~------~~-~~i~~~sG-t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 122 (386)
T 1cs1_A 52 PTRDVVQRALAELEG------GA-GAVLTNTG-MSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122 (386)
T ss_dssp HHHHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred ccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEe
Confidence 356789999999985 23 67777777 899999999997 899999997 1 2222 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
. ..|+ +.|++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+. . ++
T Consensus 123 ~--~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~--~---~~ 185 (386)
T 1cs1_A 123 D--QGDE-QALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ--N---PL 185 (386)
T ss_dssp C--TTCH-HHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--C---GG
T ss_pred C--CCCH-HHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC--C---cc
Confidence 1 1278 999999986 8999999999999999997 778888999999999999999986541 1 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
. + ++++++.|+||++ +.+|.|+ ||+++ .++++++.+..... .+.+.+.+.+.++...++
T Consensus 186 -~----~-------~~di~~~s~sK~~-~~~~~~~~G~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~---- 246 (386)
T 1cs1_A 186 -A----L-------GADLVLHSCTKYL-NGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---- 246 (386)
T ss_dssp -G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE--SSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT----
T ss_pred -c----c-------CceEEEEcCcccc-cCCCCceeEEEEe--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc----
Confidence 1 1 1358999999999 7889987 99985 23478888877665 345567777776655543
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--------------ccc----CCceeEEeeeccCChhhHHHHh
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV--------------CNF----TEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~--------------~~~----~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
+.....+.+.++++.+.+.|++++++. +.. ..++++.+ .+. .
T Consensus 247 ----------~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--~------- 306 (386)
T 1cs1_A 247 ----------TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF-ELD--G------- 306 (386)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EES--S-------
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEE-EEC--C-------
Confidence 122234456667777777776654332 111 12555544 232 1
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCC----------------CC--------CCCcEEEEEecCCcCcHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFG----------------QK--------EGIFHLRTTILPAEEDMPAIMESFK 444 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~----------------~~--------~~~~~lRis~~~~~e~i~~~~~~l~ 444 (463)
..+.+...|.+.||.+++.+ || .+ ...+++|||++. ++.++.+++|.
T Consensus 307 ------~~~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~ 377 (386)
T 1cs1_A 307 ------DEQTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLE 377 (386)
T ss_dssp ------CHHHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHH
T ss_pred ------CHHHHHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHH
Confidence 12335567888999887432 22 00 113689999996 67888888888
Q ss_pred HHHHHH
Q 041151 445 KFNDEF 450 (463)
Q Consensus 445 ~~l~~~ 450 (463)
++++++
T Consensus 378 ~al~~~ 383 (386)
T 1cs1_A 378 NGFRAA 383 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887665
No 174
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.92 E-value=6.5e-24 Score=214.56 Aligned_cols=308 Identities=13% Similarity=0.162 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
|+.+++++.+.+... ....|++..|..++++++++.+.+.+|.+ ++++++|+++++..++.++ + ++||+|++
T Consensus 15 ~~~~~~a~~~~~~~~--~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~ 87 (418)
T 2c81_A 15 SDRTRRKIEEVFQSN--RWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGI-GEGDEVIV 87 (418)
T ss_dssp CHHHHHHHHHHHHHT--CCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC--CccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCC-CCcCEEEE
Confidence 789999999888762 33348877786666666666665555543 4566666789999999999 7 89999999
Q ss_pred c-------------cCcee---cC--CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---KR--QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~~--~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ +. +++.+|+ +.|++.+++ ++++|+++ ||||...+ +++|.++|+
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~~ 154 (418)
T 2c81_A 88 PSLTWIATATAVLNVNALPVFVDVEADTYCIDP-QLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIAQ 154 (418)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCH-HHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHHH
T ss_pred CCCccHhHHHHHHHcCCEEEEEecCCCCCCcCH-HHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHHH
Confidence 7 56666 22 3678999 999998876 78988864 58998755 788888999
Q ss_pred hCCeEEEecccccccc-cCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 223 QENLVLLGDEVYQQNI-YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
++|++||+|++|+.+. + ++.+..+ + . .+.+.|| ||.+ +. | |+||++. .++++++.+
T Consensus 155 ~~~~~li~D~a~~~~~~~-~~~~~~~-------~----~----~~~~~s~s~~K~~-~~-g-~~g~~~~--~~~~l~~~~ 213 (418)
T 2c81_A 155 EHNLFVIEDCAQSHGSVW-NNQRAGT-------I----G----DIGAFSCQQGKVL-TA-G-EGGIIVT--KNPRLFELI 213 (418)
T ss_dssp HTTCEEEEECTTCTTCEE-TTEETTS-------S----S----SEEEEECCTTSSS-CS-S-SCEEEEE--SCHHHHHHH
T ss_pred HCCCEEEEECcccccCcc-CCEeccc-------c----c----ceEEEeccCCccc-CC-C-CeEEEEE--CCHHHHHHH
Confidence 9999999999999875 4 2211111 1 1 1677888 9999 76 7 9999995 357888888
Q ss_pred Hhhhhhc-------------cc--C---C--------hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 300 YKIASIA-------------LS--P---N--------VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353 (463)
Q Consensus 300 ~~~~~~~-------------~~--~---~--------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (463)
....... +. . . ...+.++.. ..++.+++..++.+++++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~-------------~~l~~~~~~~~~~~~~~~~l~ 280 (418)
T 2c81_A 214 QQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILL-------------DQLQELDDKNAIREKNAMFLN 280 (418)
T ss_dssp HHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHH-------------HHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 7654311 00 0 0 011111111 112234456666777788899
Q ss_pred HHhhcCCCcccc-cCCc-eeEEe--eeccCChhhHHHHhhcCCCChHHHHHHHHHhc-CeE---eeCCCCCCC-------
Q 041151 354 DGFNSCRNVVCN-FTEG-AMYSF--PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT-GIS---TVPGSGFGQ------- 418 (463)
Q Consensus 354 ~~L~~~pg~~~~-~~~g-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gI~---v~pg~~f~~------- 418 (463)
+.|.++||+.+. .+++ +...| +.+.++... ..+ .+..++... |.++ ||. +.++.....
T Consensus 281 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~-L~~~~gI~~~~v~~~~~p~~~~~~~~~ 353 (418)
T 2c81_A 281 DALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVK-----FGG-LNADQFCEI-LREKLNMGTFYLHPPYLPVHKNPLFCP 353 (418)
T ss_dssp HHHTTSTTEEECCCCTTEEECCCSEEEEEECGGG-----TTT-CCHHHHHHH-HHHHHTCCTTTEECCCCCGGGCTTCCG
T ss_pred HHhccCCCcccCCCCCCCcccccEEEEEEEcccc-----ccc-cCHHHHHHH-HHHcCCCCcccccccccccccCchhcc
Confidence 999988888876 4565 33322 112333200 000 124455444 5555 999 888752210
Q ss_pred -------------------CC-------CCcEEEEEec--C-CcCcHHHHHHHHHHHHHHH
Q 041151 419 -------------------KE-------GIFHLRTTIL--P-AEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 419 -------------------~~-------~~~~lRis~~--~-~~e~i~~~~~~l~~~l~~~ 450 (463)
.. ..+.+||++. . +++|++.+++.|+++++++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 354 WTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp GGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 00 0248999998 7 8999999999999887653
No 175
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.92 E-value=3e-24 Score=220.64 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=210.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~~g 155 (463)
.+.+++++.+.+. ..+.|.+ .+|..++++++++++.+.+|.+. .+++++|+++++..++.++. .++|
T Consensus 79 ~p~v~~~~~~~~~----~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~G 151 (474)
T 1wyu_B 79 NPKLHEEAARLFA----DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDRG 151 (474)
T ss_dssp CCHHHHHHHHTTS----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH----hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhcC
Confidence 4456666665422 2344553 56778999999999988878653 47788999999988665541 1588
Q ss_pred C-----EEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 156 D-----GVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 156 d-----~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
| +|+++ .|.++ ...++.+|+ ++|++++++ ++++|++++| ||||.+. ++
T Consensus 152 d~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~-~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~ 221 (474)
T 1wyu_B 152 EGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDL-EALKRELGP------HVAALMLTNP-NTLGLFE--RR 221 (474)
T ss_dssp CTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCH-HHHHHHCST------TEEEEEECSS-CTTSCCC--TT
T ss_pred CccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCH-HHHHHhhCC------CceEEEEECC-CCCcccC--CC
Confidence 7 89997 56665 335677899 999999976 7999999998 6899873 35
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC-C---ceeEEEEec
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC-G---QRGGYFEMT 289 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~-G---~R~G~~~~~ 289 (463)
+++|+++|+++|+++|+|++|..+.+ +. .+.... + ..+++.|+||+| +.| | .|+||+++
T Consensus 222 l~~i~~l~~~~g~~li~Dea~~~~~~-g~---~~~~~~--------g---~di~~~s~~K~~-~~p~g~gG~~~G~~~~- 284 (474)
T 1wyu_B 222 ILEISRLCKEAGVQLYYDGANLNAIM-GW---ARPGDM--------G---FDVVHLNLHKTF-TVPHGGGGPGSGPVGV- 284 (474)
T ss_dssp HHHHHHHHHHHTCEEEEEGGGGGGTT-TT---CCHHHH--------T---CSEEECCTTTTT-CCCCTTSCCCCCCEEE-
T ss_pred HHHHHHHHHHcCCEEEEeCchhhhhc-cC---CCcccC--------C---CcEEEEeCcccc-ccCCCCCCCCeEEEEE-
Confidence 89999999999999999999987654 21 122221 2 247889999999 666 4 59999995
Q ss_pred CCChhHHHHHHh-hh------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 290 NIPPKTVDEIYK-IA------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 290 ~~~~~~~~~l~~-~~------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
++++++.+.. .. . ...+.+.+.+.++..++.. ...+.++++.+++.+++
T Consensus 285 --~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~---------~g~~~l~~~~~~~~~~~ 353 (474)
T 1wyu_B 285 --KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRT---------LGLEGLKKAAALAVLNA 353 (474)
T ss_dssp --CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 7777665541 10 0 1123455666666665420 01233556788899999
Q ss_pred HHHHHHhhcCCCcccccCCceeE-EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 350 RMMTDGFNSCRNVVCNFTEGAMY-SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
+++.+.|++. |+.+..+...+. +|+++ +.+ .+..++... |.++||.+ |+..|+. ...+++||+
T Consensus 354 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~----------~~~~~l~~~-L~~~Gi~~-~~~~~~~-~~~~~lRis 417 (474)
T 1wyu_B 354 RYLKELLKEK-GYRVPYDGPSMHEFVAQP--PEG----------FRALDLAKG-LLELGFHP-PTVYFPL-IVKEALMVE 417 (474)
T ss_dssp HHHHHHHHHT-TCBCSSCSSCCSCEEEBC--STT----------CCHHHHHHH-HHHTTCCC-CEESCST-TSTTCEEEC
T ss_pred HHHHHHHhhc-CcEecCCCCcceEEEEEc--CCC----------CCHHHHHHH-HHHCCccc-ccccccc-ccCCEEEEE
Confidence 9999999987 887744332331 45444 221 124455544 55669975 6666642 124589999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++ .+.+++++++++|++++++
T Consensus 418 ~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 418 PTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTS
T ss_pred eecCCCHHHHHHHHHHHHHHHHh
Confidence 99 4889999999999998765
No 176
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.4e-24 Score=218.65 Aligned_cols=313 Identities=10% Similarity=-0.031 Sum_probs=215.5
Q ss_pred cHHHHHHHHHHhhhcC-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-----CC
Q 041151 82 PADAIARAKHYLSLTS-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-----EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----~g 155 (463)
++.+.+.+.+++.... .....|....|..++++++++++.+.+|.+.+++++++|+|+++++..++.++. + +|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~-~~~~~~~g 155 (497)
T 3mc6_A 77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAK-MYALHHRG 155 (497)
T ss_dssp CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHH-HHHHHHSC
T ss_pred chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHH-HHHHhcCC
Confidence 4667777777666531 133445555677899999999999998987778899999999999999999986 4 56
Q ss_pred ---CEEEEc-------------cCcee----cCC-CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 156 ---DGVVLL-------------FHTTW----KRQ-QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 156 ---d~Vlvp-------------~g~~~----~~~-~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
++|+++ .|.++ ... .+.+|+ +.|++++++ ++++|++++|+||||.+.+ +
T Consensus 156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l 225 (497)
T 3mc6_A 156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDL-GKVKKFINK------NTVLLVGSAPNFPHGIADD---I 225 (497)
T ss_dssp CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCT-TTTGGGCCS------SEEEEEEETTCTTTCCCCS---C
T ss_pred CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCH-HHHHHHHhh------CCEEEEEECCCCCCCcCCC---H
Confidence 889997 56665 223 678999 999999886 7999999999999999977 6
Q ss_pred HHHHHHhhhCCeEEEecccccccccC--C--CCCcc-chHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQ--D--ERPFV-SSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~--~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
++|.++|+++|+++|+|++|..+... . +.... .+.. ...+..+++.|++|+++ ++.++||+++
T Consensus 226 ~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~---------~~~g~d~~~~s~~K~l~--~~~~~g~~~~- 293 (497)
T 3mc6_A 226 EGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF---------RVPGVTSISCDTHKYGF--APKGSSVIMY- 293 (497)
T ss_dssp TTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST---------TSTTCCEEEEETTTTTC--CCSSCEEEEC-
T ss_pred HHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc---------cCCCCcEEEECchhhcC--CCCCceeEEe-
Confidence 67888899999999999999854321 0 00000 1110 11223578899999763 6788999995
Q ss_pred CCChhHHHHHHhhhhhcc----------cCC-----hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 290 NIPPKTVDEIYKIASIAL----------SPN-----VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~----------~~~-----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
+++.+..........+ ..+ ..++.++...+. ....++..++..++++++.+
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~------------~~~~~~~~~~~~~~~~~l~~ 359 (497)
T 3mc6_A 294 --RNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG------------ENGYIESCQEIVGAAMKFKK 359 (497)
T ss_dssp --SSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred --cCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHH
Confidence 4444333211111000 001 222333333321 12245567778889999999
Q ss_pred Hhhc-CCCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-C
Q 041151 355 GFNS-CRNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-P 431 (463)
Q Consensus 355 ~L~~-~pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~ 431 (463)
.|++ +||+.+. ++.++++.| ..+.. +..+ +.+.|.++||.+.++..+ ..+|+++. .
T Consensus 360 ~L~~~~~g~~~~~~~~~~~v~~---~~~~~-----------~~~~-l~~~L~~~Gi~v~~~~~~------~~~ri~~~~~ 418 (497)
T 3mc6_A 360 YIQENIPDLDIMGNPRYSVISF---SSKTL-----------NIHE-LSDRLSKKGWHFNALQKP------VALHMAFTRL 418 (497)
T ss_dssp HHHHSCTTCEECSCCCSSEEEE---ECTTT-----------THHH-HHHHHHTTTCBCEECCSS------CCEEEECCTT
T ss_pred HHHhcCCCEEEecCCCeeEEEE---eCCCC-----------CHHH-HHHHHHhCCEEEecCCCC------CeEEEEEeCC
Confidence 9999 6898886 455666655 22210 1334 455667789998875432 14899998 8
Q ss_pred CcCcHHHHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+.+++++++++|+++++++.+
T Consensus 419 t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 419 SAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp TTCTHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999987654
No 177
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.92 E-value=1e-24 Score=221.17 Aligned_cols=314 Identities=14% Similarity=0.086 Sum_probs=195.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
|+.+++++.+++... ..|+. ..+++.++++++.+.++ .+++|++|+|+++++..+++.... ..++.|++
T Consensus 70 ~p~v~~a~~~~~~~~----~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~ 139 (427)
T 3fq8_A 70 HPEVIEALKVAMEKG----TSFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIK 139 (427)
T ss_dssp CHHHHHHHHHHHTTC----SCCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhC----CCcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 889999999888762 12332 34677778887776655 578999999999999999954320 23466666
Q ss_pred c----cCcee----c----------CCCccc--------------ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTTW----K----------RQQIGV--------------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~~----~----------~~~~~~--------------d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
. +|... . ....++ |+ +.|++.+++. ..++++|+++.++|++|.+
T Consensus 140 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~---~~~~~~vi~~p~~~~~G~~ 215 (427)
T 3fq8_A 140 FEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDL-EAVKALFAEN---PGEIAGVILEPIVGNSGFI 215 (427)
T ss_dssp EETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCH-HHHHHHHHHS---TTTEEEEEECSSBCTTSCB
T ss_pred ECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCH-HHHHHHHHhC---CCCEEEEEEcCCcCCCCCc
Confidence 4 22111 0 001111 88 9999998762 1146777666667778876
Q ss_pred CC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 LS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
.+ .+.+++|.++|++||++||+||+|.++ .. +.. ... ..+ .- ..-+.||||++ + +|+|+||++
T Consensus 216 ~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~-g~~-~~~----~~~----~~---~~di~t~sK~~-~-~G~~~G~~~ 279 (427)
T 3fq8_A 216 VPDAGFLEGLREITLEHDALLVFDEVITGF-RI-AYG-GVQ----EKF----GV---TPDLTTLGKII-G-GGLPVGAYG 279 (427)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TT-BTT-HHH----HHT----TC---CCSEEEECGGG-G-TTSSCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecccccc-cc-Ccc-hhh----Hhc----CC---CCChhhhhhhh-h-CCcceEEEE
Confidence 65 555999999999999999999999976 42 211 111 111 11 11246899999 6 799999998
Q ss_pred ecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---C
Q 041151 288 MTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---R 360 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---p 360 (463)
+++++++.+... ...+++.+.+.+.++.++++.. .+ +.+.++++++++.+.+.|+++ .
T Consensus 280 ---~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~-----------~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (427)
T 3fq8_A 280 ---GKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL-----------RQ-PGTYEYLDQITKRLSDGLLAIAQET 344 (427)
T ss_dssp ---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH-----------TS-TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---EcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHH-----------Hh-cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589998888653 2235677889998888876411 11 123444555555555555442 0
Q ss_pred CcccccCCceeEEeeeccCCh-h-hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHH
Q 041151 361 NVVCNFTEGAMYSFPQIRLPP-K-AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPA 438 (463)
Q Consensus 361 g~~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~ 438 (463)
++....+..++++|+.+.-.. . +.. ...........+...|.++||.+.|+.. ..+|+++..+++++++
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-------~r~~~~~~~t~e~i~~ 415 (427)
T 3fq8_A 345 GHAACGGQVSGMFGFFFTEGPVHNYED--AKKSDLQKFSRFHRGMLEQGIYLAPSQF-------EAGFTSLAHTEEDIDA 415 (427)
T ss_dssp TCCCEEEEETTEEEEESSSCCCCSHHH--HTTSCHHHHHHHHHHHHHTTEECCSSTT-------SCEECCTTCCHHHHHH
T ss_pred CCCeEEEEeeeEEEEEEecCccccccc--cccccHHHHHHHHHHHHHCCcEEecCCC-------CCEEeeCcCCHHHHHH
Confidence 232223334566665443110 0 000 0000000122234456678999998652 1466666689999999
Q ss_pred HHHHHHHHHHH
Q 041151 439 IMESFKKFNDE 449 (463)
Q Consensus 439 ~~~~l~~~l~~ 449 (463)
++++|++++++
T Consensus 416 ~l~~l~~~l~~ 426 (427)
T 3fq8_A 416 TLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 178
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.92 E-value=1.7e-24 Score=221.37 Aligned_cols=306 Identities=12% Similarity=0.058 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
++.+.+++.+++.... .+....+..+...++++.+.+.++ ...++|++|+|+++++..+++.+. . +
T Consensus 93 ~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA~~~Alk~a~-~~~~~~g~~ 165 (457)
T 3tfu_A 93 HPALDQALTTQLRVMN----HVMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVSVEVAAKMAL-QYWRGRGLP 165 (457)
T ss_dssp CHHHHHHHHHHHHHCS----CCCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhcc----CccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHHHHHHHHHHH-HHHHhcCCC
Confidence 7899999998887631 111111223444455555544433 456799999999999999999886 4 5
Q ss_pred CC-EEEEc----cCcee----------------------------cCCCc-ccChHHHHHHHHHHHHhcCCceeEEEEEC
Q 041151 155 GD-GVVLL----FHTTW----------------------------KRQQI-GVLIINDLQQSVAQARSKGITVRAMVIIN 200 (463)
Q Consensus 155 gd-~Vlvp----~g~~~----------------------------~~~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~ 200 (463)
|+ .|++. +|... +...+ ..|+ +.|++++++.. .++++|+++.
T Consensus 166 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~-~~le~~l~~~~---~~~aavi~ep 241 (457)
T 3tfu_A 166 GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYS-AAFEAQLAQHA---GELAAVVVEP 241 (457)
T ss_dssp TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHH-HHHHHHHHHHG---GGEEEEEECS
T ss_pred CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHH-HHHHHHHHhCC---CCEEEEEEeC
Confidence 64 66664 22110 11111 1377 99999998421 1688888887
Q ss_pred -CCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 201 -PGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 201 -p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
++||+|.+. +.+.+++|.++|++||+++|+||+|..+... +. ....... +. .. .++ ||||.+ +
T Consensus 242 ~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~-G~-~~a~~~~--~~----~p--dii---t~sK~l-~- 306 (457)
T 3tfu_A 242 VVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRT-GA-LFAADHA--GV----SP--DIM---CVGKAL-T- 306 (457)
T ss_dssp SEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSTHHHH--TC----CC--SEE---EECGGG-G-
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccc-cc-hhHhHhc--CC----Cc--eEE---EEChhh-h-
Confidence 899999776 7778999999999999999999999986542 22 1122211 11 12 222 899998 4
Q ss_pred CC-ceeEEEEecCCChhHHHHHHhh-----h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 279 CG-QRGGYFEMTNIPPKTVDEIYKI-----A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 279 ~G-~R~G~~~~~~~~~~~~~~l~~~-----~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
.| +|+||++ +++++++.+... . ..+++.+++.+.++.++|+ ... .+.+.++++++.++
T Consensus 307 gG~~~lG~v~---~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~-----------~~~-~~~~~~~~~~~~~~ 371 (457)
T 3tfu_A 307 GGYLSLAATL---CTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVE-----------LLL-GQDWRTRITELAAG 371 (457)
T ss_dssp TTSSCCEEEE---EEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHH-----------HHH-TSCHHHHHHHHHHH
T ss_pred CCCcceEEEE---EcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHH-----------HHh-hhHHHHHHHHHHHH
Confidence 35 7999999 589999988621 2 2467889999998888763 111 12355666777777
Q ss_pred HHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 352 MTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 352 l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
+.+.|+++ |++....+.|. ++++.+.-+. +..++. ..|.++||.++|.. +++||+
T Consensus 372 l~~~L~~l~~~~~v~~vr~~G~-~~~i~l~~~~------------~~~~~~-~~l~~~Gv~v~~~~--------~~lRi~ 429 (457)
T 3tfu_A 372 LTAGLDTARALPAVTDVRVCGA-IGVIECDRPV------------DLAVAT-PAALDRGVWLRPFR--------NLVYAM 429 (457)
T ss_dssp HHHHHGGGGGSTTEEEEEECSS-CEEEEESSCC------------CHHHHH-HHHHHTTEECCCBT--------TEEEEC
T ss_pred HHHHHHHHhcCCCeeeeecCCe-EEEEEECCcc------------cHHHHH-HHHHHCCeEEEecC--------CEEEEE
Confidence 77777654 45554555554 4554443211 234444 44566799998732 379999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+. .+++++++++++|+++++++
T Consensus 430 p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 430 PPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 76 78999999999999998764
No 179
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.92 E-value=2.3e-24 Score=220.29 Aligned_cols=312 Identities=12% Similarity=0.073 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH---HhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC---VIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~V 158 (463)
|+.+.+++.+.+... . .|+ +..++++++++++.+.++ .+++|++|+|+++++..++++ +. ++++.|
T Consensus 75 ~~~v~~a~~~~~~~~--~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~~al~~ar~~~-~~~~vi 143 (453)
T 2cy8_A 75 HPRVNAAIAEALSHG--V--QYA---ASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTLLALRVARAFT-GRRMIL 143 (453)
T ss_dssp CHHHHHHHHHHHTTT--C--SSC---SSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHHHHHHHHHHHH-CCCEEE
T ss_pred CHHHHHHHHHHHHhC--C--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh-CCCEEE
Confidence 789999998888651 1 232 356899999999987754 578999999999999999998 65 554444
Q ss_pred EEc--cC-ce-------------e-----c----CC----CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-
Q 041151 159 VLL--FH-TT-------------W-----K----RQ----QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC- 208 (463)
Q Consensus 159 lvp--~g-~~-------------~-----~----~~----~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~- 208 (463)
+.+ +. .. + + .. .+ .|+ +.|++.+++.. +++++|+++..+||||.+
T Consensus 144 ~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~-~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~ 218 (453)
T 2cy8_A 144 RFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-DDI-EGMREVFANHG---SDIAAFIAEPVGSHFGVTP 218 (453)
T ss_dssp EECC----------------------------CGGGEEEECT-TCH-HHHHHHHHHHG---GGEEEEEECSSEHHHHTEE
T ss_pred EEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-CCH-HHHHHHHHhcC---CCEEEEEECCCCCCCCCcC
Confidence 333 21 10 0 0 00 01 378 99999987521 156666544445779975
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
.+.+++++|.++|++||++||+||+|..+ .. +. ...+... +. .. . +.|+||++ + +|+|+||++
T Consensus 219 ~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~-g~-~~~~~~~--~~----~~--d---i~s~sK~l-~-~G~~~G~v~- 281 (453)
T 2cy8_A 219 VSDSFLREGAELARQYGALFILDEVISGF-RV-GN-HGMQALL--DV----QP--D---LTCLAKAS-A-GGLPGGILG- 281 (453)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTT-TT-CT-THHHHHH--TC----CC--S---EEEEEGGG-G-TTSSCEEEE-
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCcccc-cc-Cc-hhhhHHh--CC----CC--c---EEEEChhh-h-CCcceEEEe-
Confidence 57999999999999999999999999976 42 21 1111111 11 12 1 34899999 6 499999999
Q ss_pred cCCChhHHHHHHh---h---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 041151 289 TNIPPKTVDEIYK---I---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR-- 360 (463)
Q Consensus 289 ~~~~~~~~~~l~~---~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p-- 360 (463)
+++++++.+.. . ...+++.+++.+.++.++|+ .+. .+++.++++++++++.+.|+++.
T Consensus 282 --~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~----------~~~--~~~~~~~~~~~~~~l~~~L~~~~~~ 347 (453)
T 2cy8_A 282 --GREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID----------TIL--EDDVCAKINDLGQFAREAMNHLFAR 347 (453)
T ss_dssp --ECHHHHTTSSSCC---------CCCCHHHHHHHHHHHH----------HHH--HTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHH----------HHh--hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 48888877755 1 22356788899988887763 101 13355666777777777776531
Q ss_pred -Ccc-cccCCceeEEeeeccC-----ChhhHHHHhhcCC-C--ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 361 -NVV-CNFTEGAMYSFPQIRL-----PPKAIEAAKRAGK-V--PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 361 -g~~-~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~-~--~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
++. ...+.| .++|+.+.- .... ........ . +..++... |.++||.+.|+ + .+|+++.
T Consensus 348 ~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-l~~~Gv~v~~~-------~--~~~l~~~ 415 (453)
T 2cy8_A 348 KGLNWLAYGRF-SGFHLMPGLPPNTTDTGS-ITRAEVARPDVKMIAAMRMA-LILEGVDIGGR-------G--SVFLSAQ 415 (453)
T ss_dssp TTCCEEEECCT-TEEEEEETSCTTCCCCHH-HHTTCSCCCCHHHHHHHHHH-HHHTTEECBTT-------T--EEECCTT
T ss_pred CCCcEEEEEee-eEEEEEEecccccccccc-ccccccccccHHHHHHHHHH-HHHCCeEEeCC-------C--CEEeecc
Confidence 332 234444 566765542 1000 00000000 0 12344444 55689999652 1 3788766
Q ss_pred CCcCcHHHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+++++++++++|+++++++.+
T Consensus 416 ~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 416 HEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999987754
No 180
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.92 E-value=3.3e-24 Score=219.87 Aligned_cols=275 Identities=9% Similarity=-0.034 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE---EEEc-----------------cCcee---
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG---VVLL-----------------FHTTW--- 166 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~---Vlvp-----------------~g~~~--- 166 (463)
..+++.++++++ .++++|++|+|+++++..++.+++ +||+. |+++ .|.++
T Consensus 114 ~~l~~~la~~~g------~~~~~v~~t~g~t~al~~~~~~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~ 186 (465)
T 3e9k_A 114 ESIVGLMKDIVG------ANEKEIALMNALTVNLHLLMLSFF-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEES 186 (465)
T ss_dssp HHHHGGGHHHHT------CCGGGEEECSCHHHHHHHHHHHHC-CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHcC------CCcCCEEEECCHHHHHHHHHHHhc-cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceee
Confidence 567788887775 568899999999999999999997 66655 9886 34432
Q ss_pred ------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 167 ------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 167 ------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
....+.+|+ ++|++++++.. +++++|++++||||||.+++ +++|.++|+++|++||+|++|+....
T Consensus 187 ~v~~~~~~~~~~~d~-~~l~~~i~~~~---~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~- 258 (465)
T 3e9k_A 187 MRMIKPREGEETLRI-EDILEVIEKEG---DSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV- 258 (465)
T ss_dssp EEEECCCTTCSSCCH-HHHHHHHHHHG---GGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-
T ss_pred eEEEecCCCCCccCH-HHHHHHHHhcC---CCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc-
Confidence 234567899 99999997421 17999999999999999998 67778889999999999999985322
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh----------------
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS---------------- 304 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~---------------- 304 (463)
...+... + ..+++.|++|++.+.|+ ++|++++ ++++++.+.....
T Consensus 259 ----~~~~~~~--------~---~D~~~~s~~K~l~~gp~-~~g~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 319 (465)
T 3e9k_A 259 ----ELYLHDW--------G---VDFACWCSYKYLNAGAG-GIAGAFI---HEKHAHTIKPALVGWFGHELSTRFKMDNK 319 (465)
T ss_dssp ----CCCHHHH--------T---CCEEEECSSSTTCCCTT-CCCEEEE---CGGGTTTSCCSSCCGGGBCHHHHTTCCSC
T ss_pred ----CCchhhc--------C---CCEEEECcccccccCCC-ceEEEEE---cHHHHhhcCCcccCccCCCCCcccccCCC
Confidence 2233332 1 23788999999832333 6899985 7777655432111
Q ss_pred ----------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcC----------CCcc
Q 041151 305 ----------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSC----------RNVV 363 (463)
Q Consensus 305 ----------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------pg~~ 363 (463)
...+++.+...++.++++ .+..+ ++++++++.++++++.+.|++. +|++
T Consensus 320 ~~~~~~~~~~~~gt~~~~~~~a~~aal~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 389 (465)
T 3e9k_A 320 LQLIPGVCGFRISNPPILLVCSLHASLE----------IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVN 389 (465)
T ss_dssp CCBCSSGGGGCCSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEE
T ss_pred cCcCCChHHhccCCccHHHHHHHHHHHH----------HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeE
Confidence 001344444555555542 12222 5778889999999999999884 6888
Q ss_pred cccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c--CCcCcH
Q 041151 364 CNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L--PAEEDM 436 (463)
Q Consensus 364 ~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~--~~~e~i 436 (463)
+..|. .+.++++.++ .. ..++ .+.|.++||.+.. . +.+++|+|+ . ++++|+
T Consensus 390 ~~~p~~~~~~g~~~~~~~~--~~------------~~~l-~~~L~~~Gi~v~~----~---~~~~iRis~~~~~~t~edi 447 (465)
T 3e9k_A 390 IITPSHVEERGCQLTITFS--VP------------NKDV-FQELEKRGVVCDK----R---NPNGIRVAPVPLYNSFHDV 447 (465)
T ss_dssp ECSCSSGGGBCSCEEEEEC--CT------------TCCH-HHHHHTTTEECEE----E---TTTEEEEBCCTTTCCHHHH
T ss_pred EeCCCCHhhcccEEEEEec--CC------------HHHH-HHHHHHCCEEEec----C---CCCEEEEeCcccCCCHHHH
Confidence 88765 2445554443 11 2233 3456678999873 2 234899998 4 789999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEF 450 (463)
Q Consensus 437 ~~~~~~l~~~l~~~ 450 (463)
+++++.|++++++.
T Consensus 448 ~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 448 YKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 181
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.92 E-value=2.3e-23 Score=212.81 Aligned_cols=320 Identities=10% Similarity=-0.037 Sum_probs=210.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC---CcEEEcCCcHHHHHHHHHHHhcC-----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP---ELIFLTDGASKGVMQTLNCVIRG----- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~~----- 153 (463)
++.+.+++.+++.. ....|....+..++++++.+++.+.+|.+.+. ..+++|+|+++++..++.++. +
T Consensus 55 ~~~v~e~~~~a~~~---~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~-~~~~~~ 130 (452)
T 2dgk_A 55 DENVHKLMDLSINK---NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK-WRWRKR 130 (452)
T ss_dssp CHHHHHHHHHTTTC---BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHhcc---CCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH-HHHHHH
Confidence 66788887777754 33445555577889999999998888865432 259999999999999998875 4
Q ss_pred ---CC-----CEEEEc------------cCcee---c-CC-CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 154 ---EG-----DGVVLL------------FHTTW---K-RQ-QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 154 ---~g-----d~Vlvp------------~g~~~---~-~~-~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
+| +.|+++ .|+++ + .. ++.+|+ +.|++++++ ++++|++++|+||||.+
T Consensus 131 ~~~~G~~~~~~~vi~~~~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~-~~l~~~i~~------~t~~v~~~~~~n~tG~~ 203 (452)
T 2dgk_A 131 MEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDP-KRMIEACDE------NTIGVVPTFGVTYTGNY 203 (452)
T ss_dssp HHHTTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCH-HHHHHHCCT------TEEEEECBBSCTTTCBB
T ss_pred HHhcCCCCCCcEEEECCCcHHHHHHHHHcCceEEEEecCCCCCeECH-HHHHHHHhh------CCEEEEEEcCCcCCccc
Confidence 55 588887 56666 2 22 688999 999999987 79999999999999999
Q ss_pred CCHHHHHHHHHHhhhC------CeEEEeccccccccc--CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 209 LSEANLREILRFCYQE------NLVLLGDEVYQQNIY--QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~------~~~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
.+ +++|.++|+++ ++++++|++|..+.. -.+.....+ ...+-.++..|++| + ++++
T Consensus 204 ~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-----------~~~~~d~~~~~~hK-~-~~~~ 267 (452)
T 2dgk_A 204 EF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-----------RLPRVKSISASGHK-F-GLAP 267 (452)
T ss_dssp CC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-----------TSTTEEEEEEETTT-T-TCCC
T ss_pred CC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc-----------CCCCCcEEEECccc-c-cCCC
Confidence 76 67777788884 999999999987642 011111111 11112456788899 4 5688
Q ss_pred ceeEEEEecCCChhHH-HHHHhhhhh------c----ccC---ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 041151 281 QRGGYFEMTNIPPKTV-DEIYKIASI------A----LSP---NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLR 346 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~-~~l~~~~~~------~----~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (463)
+++||+++ .+++.+ +.+...... . .+. ..+.|.++...+ .....+++.+++.
T Consensus 268 ~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l------------g~~g~~~~~~~~~ 333 (452)
T 2dgk_A 268 LGCGWVIW--RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL------------GREGYTKVQNASY 333 (452)
T ss_dssp SSCEEEEE--SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred CCeEEEEE--cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH------------hHHHHHHHHHHHH
Confidence 99999997 344432 333211110 0 011 122333333222 1123456778889
Q ss_pred HHHHHHHHHhhcCCCcccccC-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 347 RRARMMTDGFNSCRNVVCNFT-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
++++++.+.|++++|+.+..| ..+++.+ ++. ... ....+..++ .+.|.++||.+..........+
T Consensus 334 ~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f-~~~--~~~------~~~~~~~~l-~~~L~~~Gi~v~~~~~~~~~~~ 403 (452)
T 2dgk_A 334 QVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF-KLK--DGE------DPGYTLYDL-SERLRLRGWQVPAFTLGGEATD 403 (452)
T ss_dssp HHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEE-EEC--TTC------CCSCCHHHH-HHHHHHTTCBCCEEECSTTCTT
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEE-Eec--Ccc------cccCCHHHH-HHHHHhcCCeeeeeeCCcccCC
Confidence 999999999999878887643 3444443 332 110 000012344 4556678997654222111123
Q ss_pred CcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 422 IFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 422 ~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..++|++++ .++++++++++.|+++++++.+
T Consensus 404 ~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 404 IVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 458999999 6789999999999999887765
No 182
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.92 E-value=3.1e-23 Score=209.08 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCCcc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQIG 172 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~~~ 172 (463)
+.++++++.+.+.+| .+++++++|+++++..++.+++ ++||+|+++ .|.++ ..+.
T Consensus 81 p~~~~l~~~la~~~g----~~~~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-- 153 (414)
T 3ndn_A 81 PTVSVFEERLRLIEG----APAAFATASGMAAVFTSLGALL-GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG-- 153 (414)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHHHHHHC----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC--
Confidence 344444444444434 3678889989999999999997 899999997 23333 1111
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
-|+ +.|++++++ ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|+...+. . ++
T Consensus 154 ~d~-~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~--~---~~---- 214 (414)
T 3ndn_A 154 DDL-SQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ--Q---GF---- 214 (414)
T ss_dssp TCH-HHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC--C---CG----
T ss_pred CCH-HHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC--C---ch----
Confidence 178 999999876 8999999999999999977 778888999999999999999854331 1 11
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHH-HHHhhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVD-EIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
.+ . ..+++.|+||++ +.+| +++||++ ++++.+. .+..... .....+.....++...++
T Consensus 215 -~~----g---~div~~S~sK~l-~~~G~~~~G~vv---~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~------- 275 (414)
T 3ndn_A 215 -PL----G---VDVVVYSGTKHI-DGQGRVLGGAIL---GDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE------- 275 (414)
T ss_dssp -GG----T---CSEEEEETTTTT-TCSSCCCCEEEE---ECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG-------
T ss_pred -hc----C---CCeEeccCCccc-cCCCCceEEEEE---ECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------
Confidence 11 1 248899999999 7778 8999999 4777665 6665444 334444444443333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCC----------------ceeEEeeeccCCh---hhHHHHhh
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTE----------------GAMYSFPQIRLPP---KAIEAAKR 389 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~----------------g~~~~~~~~~~~~---~~~~~~~~ 389 (463)
.+....++..++++.+.+.|++.|++..+ .|. .|.++++.++-.. .
T Consensus 276 -------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~------- 341 (414)
T 3ndn_A 276 -------TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK------- 341 (414)
T ss_dssp -------GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH-------
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH-------
Confidence 22334556677888888999887765432 221 3556675553210 0
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCC--------------------CCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQ--------------------KEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------------~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.....+...++..++.+.+|..+.. .-..+++|||++. |+.+.+++.|++++
T Consensus 342 ----~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 342 ----QRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp ----HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 0222233445666777777776532 0124689999995 67778888887765
No 183
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.92 E-value=4.5e-24 Score=208.72 Aligned_cols=169 Identities=9% Similarity=0.118 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCCcc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQIG 172 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~~~ 172 (463)
+++++++++++ .+ +.|++++| ++++..++.+++ ++||.|+++ .|.++ ..+ .
T Consensus 2 ~l~~~la~~~g------~~-~~i~~~sG-~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 70 (331)
T 1pff_A 2 ALEGKIAKLEH------AE-ACAATASG-MGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID--M 70 (331)
T ss_dssp HHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC--T
T ss_pred hHHHHHHHHhC------CC-eEEEeCCh-HHHHHHHHHHhc-CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC--C
Confidence 68999999985 33 56666666 899999999997 899999997 13333 111 1
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-CCeEEEecccccccccCCCCCccchHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-ENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
.|+ +.+++.+++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+|++|+.+.+. . ++ .
T Consensus 71 ~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~--~---~~-~- 133 (331)
T 1pff_A 71 AVP-GNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT--N---PL-D- 133 (331)
T ss_dssp TST-THHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC--C---GG-G-
T ss_pred CCH-HHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC--C---hh-h-
Confidence 477 889988876 7999999999999999997 7888889999 99999999999876541 1 11 1
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCCh-hHHHHHHhhhhh--cccCChHHHHHHHHhc
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPP-KTVDEIYKIASI--ALSPNVPAQIFMGLMV 321 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~q~~~~~~l 321 (463)
+ ++++++.|+||++ +.+|.| +||+++ ++ ++++.+...... +.+.+.+.+.++...+
T Consensus 134 ---~-------~~d~~~~s~~K~~-~~~~~r~~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 193 (331)
T 1pff_A 134 ---L-------GVDIVVHSATKYI-NGHTDVVAGLVCS---RADIIAKVKSQGIKDITGAIISPHDAWLITRGT 193 (331)
T ss_dssp ---G-------TCSEEEEETTTTT-SSSSSCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred ---c-------CCcEEEEECcccc-CCCCCceEEEEEe---CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCc
Confidence 1 2458999999999 889999 899984 76 888888876643 3456777776655554
No 184
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.92 E-value=8.4e-24 Score=214.86 Aligned_cols=312 Identities=12% Similarity=0.024 Sum_probs=197.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH---HhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC---VIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~V 158 (463)
++.+.+++.+.+... ....| ..++++++++.+.+..+ .+++|++|+|+++++..++++ +. + ++.|
T Consensus 74 ~~~v~~a~~~~~~~~--~~~~~-----~~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~~~al~~ar~~~-~-~~~v 141 (434)
T 2epj_A 74 HPRVLEAVEEALARG--WLYGA-----PGEAEVLLAEKILGYVK---RGGMIRFVNSGTEATMTAIRLARGYT-G-RDLI 141 (434)
T ss_dssp CHHHHHHHHHHHHTC--SCCSS-----CCHHHHHHHHHHHHHHC---TTCEEEEESSHHHHHHHHHHHHHHHH-C-CCEE
T ss_pred CHHHHHHHHHHHHhC--CCCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh-C-CCeE
Confidence 789999999888761 11223 23455556666655443 468999999999999999997 54 4 4556
Q ss_pred EEc----cCcee-----c----------C-CC---------c---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 159 VLL----FHTTW-----K----------R-QQ---------I---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 159 lvp----~g~~~-----~----------~-~~---------~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
+++ +|... . . .+ . -.|+ +.|++.+++.. .++++|+++..+||||
T Consensus 142 i~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~vi~ep~~~~~G 217 (434)
T 2epj_A 142 LKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDV-EALERVFAEYG---DRIAGVIVEPVIANAG 217 (434)
T ss_dssp EEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCH-HHHHHHHHHHG---GGEEEEEECSSBCSSS
T ss_pred EEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCH-HHHHHHHHhCC---CCEEEEEEeCCcCCCC
Confidence 664 22110 0 0 00 0 0378 99999997521 1566655444467799
Q ss_pred cCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 207 QCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 207 ~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
.+. +.+.+++|.++|++||+++|+||+|..+.. +. .... . .++. .. -+.||||++ +. |+|+||
T Consensus 218 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~--g~-~~~~-~---~~~~--~~-----di~s~sK~l-~~-G~~~G~ 281 (434)
T 2epj_A 218 VIPPRREFLAALQRLSRESGALLILDEVVTGFRL--GL-EGAQ-G---YFNI--EG-----DIIVLGKII-GG-GFPVGA 281 (434)
T ss_dssp CBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS--ST-THHH-H---HHTC--CC-----SEEEEEGGG-GT-TSSCEE
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC--Cc-chhh-H---HhCC--CC-----Ceeeecchh-cC-Ccceee
Confidence 766 799999999999999999999999997632 21 1111 1 1111 11 235999999 64 999999
Q ss_pred EEecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 041151 286 FEMTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-- 359 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 359 (463)
++ +++++++.+... ...+++.+++.+.++.++|+ ..++ +++.++++++++++.+.|+++
T Consensus 282 v~---~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 346 (434)
T 2epj_A 282 VA---GSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLK-----------ALEE-EPVYSVSREAAKALEEAASEVLD 346 (434)
T ss_dssp EE---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH-----------HHHH-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ee---ecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHHh
Confidence 99 488888777652 12356778888888877763 2222 345667777777887777654
Q ss_pred -CCccc-ccCCceeEEeeeccC-Ch-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCc
Q 041151 360 -RNVVC-NFTEGAMYSFPQIRL-PP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEED 435 (463)
Q Consensus 360 -pg~~~-~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~ 435 (463)
.++.. ..+ .+.++|+.+.- +. .+.+. ......+..++. ..|.++||.+.|+.. .++|+++..++++
T Consensus 347 ~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~Gv~v~~~~~-------~~~~~~~~~t~e~ 416 (434)
T 2epj_A 347 RTGLPYTINR-VESMMQLFIGVEEVSNAAQA-RKADKKFYVKLH-EEMLRRGVFIAPSNL-------EAVFTGLPHQGEA 416 (434)
T ss_dssp HHTCCEEEEE-ETTEEEEEETCSCCSSHHHH-TTSCHHHHHHHH-HHHHHTTEECCSSTT-------SCEECCTTCSHHH
T ss_pred hCCCcEEEEE-eeeEEEEEEeCCCcccchhc-cccCHHHHHHHH-HHHHHCCeEEeccCC-------CcEEEeccCCHHH
Confidence 13322 333 34566755532 10 00000 000000123444 445678999999742 1478877789999
Q ss_pred HHHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDEF 450 (463)
Q Consensus 436 i~~~~~~l~~~l~~~ 450 (463)
+++++++|+++++++
T Consensus 417 i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 417 LEIAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 185
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.91 E-value=1.9e-23 Score=207.42 Aligned_cols=300 Identities=12% Similarity=0.079 Sum_probs=202.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH---hcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV---IRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~~gd~V 158 (463)
|+.+++++.+.+... .|.+.....++|++++++++ . ++|++|+|+++++..++.++ + ++||+|
T Consensus 12 ~~~v~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~-~~gd~V 77 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSK-----QLTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFS-ADRNEI 77 (375)
T ss_dssp CHHHHHHHHHHHTSS-----CCSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCC-TTSCEE
T ss_pred CHHHHHHHHHHHHcC-----cccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccC-CCCCEE
Confidence 889999998887651 23344467899999999985 2 28999999999999999999 7 899999
Q ss_pred EEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 159 VLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 159 lvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+++ .|.++ ......+|+ +.|++.+++ ++++|++++| ||.+.+ +++|.++|
T Consensus 78 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~ 144 (375)
T 2fnu_A 78 ITTPISFVATANMLLESGYTPVFAGIKNDGNIDE-LALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLC 144 (375)
T ss_dssp EECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCG-GGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHH
T ss_pred EECCCccHhHHHHHHHCCCEEEEeccCCCCCCCH-HHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHH
Confidence 997 56665 222336899 999988876 7999888877 999987 67888889
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHH
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+++|++||+|++|+.+..... ..+ ...+ .+++.|+| |++ ++ | +|++++. .++++++.+
T Consensus 145 ~~~~~~li~D~a~~~~~~~~~---~~~-----------~~~~-~i~~~s~s~~K~~-~~-g--~g~~~~~-~~~~~~~~~ 204 (375)
T 2fnu_A 145 KKHSLSFLSDSSHALGSEYQN---KKV-----------GGFA-LASVFSFHAIKPI-TT-A--EGGAVVT-NDSELHEKM 204 (375)
T ss_dssp HHHTCEEEEECTTCTTCEETT---EET-----------TSSS-SEEEEECCTTSSS-CC-S--SCEEEEE-SCHHHHHHH
T ss_pred HHcCCEEEEECccccCCeECC---eec-----------cccC-CeEEEeCCCCCCc-cc-c--CceEEEe-CCHHHHHHH
Confidence 999999999999986543111 111 2111 37788888 998 65 7 6777751 137788888
Q ss_pred Hhhhh-hc------------ccCC-hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 300 YKIAS-IA------------LSPN-VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 300 ~~~~~-~~------------~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
..... .. .+.+ ...+..++..+. .....++..++++++++++.+.|+++||+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 273 (375)
T 2fnu_A 205 KLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS-----------QLKKAPFLMQKREEAALTYDRIFKDNPYFTPL 273 (375)
T ss_dssp HHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH-----------HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred HHHHhcCCccccccccccccccccCCCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 76543 11 1111 122222221110 11224456777888999999999998888776
Q ss_pred cC----Cce-eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC-------CC-------CC----CCC
Q 041151 366 FT----EGA-MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG-------FG-------QK----EGI 422 (463)
Q Consensus 366 ~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~-------f~-------~~----~~~ 422 (463)
.+ .++ +++|+.++ ...+ .+..++ ...|.++||.++.+.. |+ .+ ...
T Consensus 274 ~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~l-~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 342 (375)
T 2fnu_A 274 HPLLKDKSSNHLYPILMH--QKFF--------TCKKLI-LESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYH 342 (375)
T ss_dssp GGGCSSCCCCSCEEEEEC--GGGG--------GGHHHH-HHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHH
T ss_pred CCCCCCCcceEEEEEEeC--cccc--------chHHHH-HHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHh
Confidence 54 233 44464443 1100 013344 4456788999984221 11 00 012
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++||++. .+++++++++++|+++++++
T Consensus 343 ~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 343 AEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 58999999 58899999999999988764
No 186
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.91 E-value=2.9e-24 Score=213.70 Aligned_cols=296 Identities=14% Similarity=0.105 Sum_probs=197.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++.+++++.+.+.. ..|.+..+..++|++++++++ .+++++++|+++++..++.++ + ++||+|++
T Consensus 16 ~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~-~~gd~Vi~ 81 (373)
T 3frk_A 16 EYEIKFKFEEIYKR-----NWFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDI-GFGDEVIV 81 (373)
T ss_dssp HHHHHHHHHHHHHH-----TCCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHHC-----CCccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCC-CCcCEEEE
Confidence 67788888877776 246666778999999999985 248999999999999999999 7 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ ..+.+.+|+ +.|++++++ ++++|+ |+||||...+ +++|.++|+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~ 148 (373)
T 3frk_A 82 PSNTFIATALAVSYTGAKPIFVEPDIRTYNIDP-SLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAK 148 (373)
T ss_dssp ETTSCTHHHHHHHHHSCEEEEECEETTTTEECG-GGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHH
T ss_pred CCCCcHHHHHHHHHcCCEEEEEeccccccCcCH-HHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHH
Confidence 7 56665 235688999 999998876 789887 7789999877 667888888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
++|+++|+|++|+.+..-+...... .. .+++.||| |.+ +.+| ++|+++. .++++++.+.
T Consensus 149 ~~~~~li~D~a~~~g~~~~~~~~~~------------~~---d~~~~S~~~~K~l-~~~g-~gg~~~~--~~~~~~~~~~ 209 (373)
T 3frk_A 149 KYNLKLIEDAAQAHGSLYKGMKVGS------------LG---DAAGFSFYPAKNL-GSLG-DGGAVVT--NDKDLAEKIK 209 (373)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTS------------SS---SEEEEECCTTSSS-CCSS-SCEEEEE--SCHHHHHHHH
T ss_pred HcCCEEEEECCcccCCEECCEeccc------------cc---cEEEEeCcCCCcc-Cccc-eeEEEEe--CCHHHHHHHH
Confidence 9999999999998643211111100 01 27788877 887 5334 4888885 4567877777
Q ss_pred hhhhhc-------------ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-
Q 041151 301 KIASIA-------------LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF- 366 (463)
Q Consensus 301 ~~~~~~-------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~- 366 (463)
...... +..+.+...+.... +...+...++.+++.+++.+.|.+++ +.+..
T Consensus 210 ~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 274 (373)
T 3frk_A 210 ALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVK--------------LKYLDKWNEERRKIAQKYIAGINNPN-VIIPVE 274 (373)
T ss_dssp HHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHH--------------HHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCC
T ss_pred HHHhcCcccCCccccccccCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhccCc-eEeccC
Confidence 654311 11122222222211 22234456667777888888888874 55432
Q ss_pred CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----------C---------CCcEEE
Q 041151 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----------E---------GIFHLR 426 (463)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----------~---------~~~~lR 426 (463)
+.+....|..+.+.. .+.+.+.+.|.++||.++++...... . ..+.+|
T Consensus 275 ~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 342 (373)
T 3frk_A 275 ADYAKHVWYTFVIRS------------EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILS 342 (373)
T ss_dssp CTTEECCCSSEEEEE------------SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEE
T ss_pred CCCCceeeEEEEEEe------------CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEE
Confidence 223322221111111 02333556677889999976521110 0 015799
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++. .+++|++++++.|+++..++
T Consensus 343 l~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 343 IPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp ECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 9999 89999999999998776554
No 187
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.91 E-value=1.5e-23 Score=214.00 Aligned_cols=304 Identities=12% Similarity=0.114 Sum_probs=198.0
Q ss_pred cHHHH-H-HHHH---HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cC-
Q 041151 82 PADAI-A-RAKH---YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RG- 153 (463)
Q Consensus 82 p~~~~-~-a~~~---~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~- 153 (463)
++.++ + ++.+ .+... ..|++ .+..+.+.++++.+.+.++ ...+++|++|+|+++++..+++.+. ..
T Consensus 72 ~p~v~~~~A~~~~~~~~~~~----~~~~~-~~~~~~~~~la~~la~~~~-~~~~~~v~~~~~gseA~~~aik~a~~~~~~ 145 (449)
T 2cjg_A 72 PPALVDDREFHAELMQAALN----KPSNS-DVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSR 145 (449)
T ss_dssp CHHHHTCHHHHHHHHHHHTC----CCCTT-TCCCHHHHHHHHHHHHHHC-CTTCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc----CCCCc-ccCCHHHHHHHHHHHHhcC-CCCCCEEEEeCchHHHHHHHHHHHHHHhcc
Confidence 78899 8 8888 66652 12332 2233455555555555544 2467899999999999999997542 02
Q ss_pred ----------CCCEEEEc---cCce------------------------e---cCCC---c--------ccChHHHHHHH
Q 041151 154 ----------EGDGVVLL---FHTT------------------------W---KRQQ---I--------GVLIINDLQQS 182 (463)
Q Consensus 154 ----------~gd~Vlvp---~g~~------------------------~---~~~~---~--------~~d~~~~l~~~ 182 (463)
+|+.|++. +.+. + +..+ . ..++ +.|++.
T Consensus 146 ~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~le~~ 224 (449)
T 2cjg_A 146 HNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL-RQARAA 224 (449)
T ss_dssp HHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHH-HHHHHH
T ss_pred cccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHH-HHHHHH
Confidence 28888886 1110 0 1111 0 1234 558888
Q ss_pred HHHHHhcCCceeEEEEECCCCCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 183 VAQARSKGITVRAMVIINPGNPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 183 l~~~~~~~~~~~~i~l~~p~NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
+++. .+++++|+++.++|||| ..++.+++++|.++|++||+++|+||+|..+.+. +. ...+... +. ..
T Consensus 225 i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g~-~~~~~~~--~~----~~ 293 (449)
T 2cjg_A 225 FETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLT-GT-AWAYQQL--DV----AP 293 (449)
T ss_dssp HHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSTHHHH--TC----CC
T ss_pred HHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCcc-Cc-ceeeccc--CC----Cc
Confidence 8631 11677766555579999 5999999999999999999999999999976552 22 1122211 11 22
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH-----hhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY-----KIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-----~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
. +.||||++ |+||+++ ++++++.+. ... ..+++.+.+.|.++.++|+ ..
T Consensus 294 --d---i~t~sK~l------~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~-----------~~ 348 (449)
T 2cjg_A 294 --D---IVAFGKKT------QVCGVMA---GRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILE-----------VI 348 (449)
T ss_dssp --S---EEEECGGG------SSEEEEE---CGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHH-----------HH
T ss_pred --e---EEEecCcc------cEEEEEE---CHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHH-----------HH
Confidence 1 23789976 6999994 778877532 122 2467788999999888863 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCC-cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEe
Q 041151 336 RESKGILESLRRRARMMTDGFNS----CRN-VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIST 410 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~----~pg-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v 410 (463)
.+ +.+.++++++++++.+.|++ +|+ +....+.|.|+ ++++ +... +..+++..++ ++||.+
T Consensus 349 ~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~-~~~~--~~~~----------~~~~~~~~l~-~~Gv~v 413 (449)
T 2cjg_A 349 EA-EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMC-AFSL--PTTA----------DRDELIRQLW-QRAVIV 413 (449)
T ss_dssp HH-HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEE-EEEC--SSHH----------HHHHHHHHHH-HTTEEC
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEE-EEEE--CChH----------HHHHHHHHHH-HCCeEE
Confidence 21 34667778888888888875 354 55555666655 4344 3210 1344555544 689999
Q ss_pred eCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 411 VPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 411 ~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.|+. .+++|++++ .+++++++++++|+++++++
T Consensus 414 ~~~g-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 414 LPAG-------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9962 248999776 79999999999999988653
No 188
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.91 E-value=1.9e-22 Score=204.69 Aligned_cols=271 Identities=13% Similarity=0.097 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
..++|+.++++++ .. +.|++++|+ +++..++.+++ ++||+|+++ .|.++ .-+.
T Consensus 116 ~~~l~~~lA~l~g------~~-~~v~~~sG~-~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 186 (445)
T 1qgn_A 116 TVVLEEKISALEG------AE-STLLMASGM-CASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP 186 (445)
T ss_dssp HHHHHHHHHHHHT------CS-EEEEESCHH-HHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred HHHHHHHHHHHhC------CC-cEEEeCCHH-HHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 3588888888874 22 566666665 99999999998 899999997 23333 1111
Q ss_pred cccChHHHHHHHHHHHHhcCCce-eEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 171 IGVLIINDLQQSVAQARSKGITV-RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~-~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
-|+ +.|++++++ ++ ++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+ . . +.
T Consensus 187 --~d~-~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~-~-~---~~- 248 (445)
T 1qgn_A 187 --ADV-GALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN-Q-K---AL- 248 (445)
T ss_dssp --SCH-HHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT-C-C---TT-
T ss_pred --CCH-HHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccccc-C-C---cc-
Confidence 178 999999987 78 99999999999999988 67888899999999999999986533 1 1 11
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPG 327 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~ 327 (463)
. + +..++++|+||.+ |.+| +++||++ +++++++.+..... .....+.+....+...++
T Consensus 249 ~----~-------g~Div~~S~sK~~-gg~gd~~~G~l~---~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~----- 308 (445)
T 1qgn_A 249 A----L-------GADLVLHSATKFL-GGHNDVLAGCIS---GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMK----- 308 (445)
T ss_dssp T----T-------TCSEEEECTTTTT-TCSSSCCCEEEE---ECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG-----
T ss_pred c----c-------CCEEEEECCcccc-cccccceEEEEE---ECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH-----
Confidence 1 1 1348999999998 6455 5799999 48888888876654 233344544444444432
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccC----------------CceeEEeeeccCChhhHHHHhhc
Q 041151 328 DISYEQFVRESKGILESLRRRARMMTDGFNSCRNV-VCNFT----------------EGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+....+++.++++.+.+.|++.|++ .+..| ..+.++++.+.-...
T Consensus 309 ---------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~-------- 371 (445)
T 1qgn_A 309 ---------TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLL-------- 371 (445)
T ss_dssp ---------GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHH--------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHH--------
Confidence 12223445667788889999888776 34333 123344533431100
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCC--------------------CCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQ--------------------KEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------------~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+.......++..++.++.|+.+.. .-..+.||||++ .|+++.+++.|++++++
T Consensus 372 ----~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 372 ----TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDS 444 (445)
T ss_dssp ----HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhh
Confidence 111122223334777788876531 011368999999 46899999999998864
No 189
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=8.6e-22 Score=196.48 Aligned_cols=283 Identities=10% Similarity=0.078 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------------cC--cee---cCC
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------------FH--TTW---KRQ 169 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------~g--~~~---~~~ 169 (463)
.++.+++++.+.+..|.. +.|++|+|+++++..++..+ ++||+|+++ .| .++ +.+
T Consensus 34 ~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 108 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAE 108 (379)
T ss_dssp HHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECE
T ss_pred HHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecc
Confidence 355555666655555543 68999999999999988654 699999986 23 233 211
Q ss_pred ---------C-cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccccc
Q 041151 170 ---------Q-IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239 (463)
Q Consensus 170 ---------~-~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~ 239 (463)
. ..+|+ +++++.+++. ++++|++++++||||.+++.+++++|.++|+++|+++|+|++++ ..
T Consensus 109 ~~g~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~- 180 (379)
T 3ke3_A 109 RTEDTEAPKPFAPVDI-ETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GC- 180 (379)
T ss_dssp ESSCCSSCCCEECCCH-HHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TT-
T ss_pred ccccccccCCCCCCCH-HHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CC-
Confidence 1 24899 9999999653 79999999999999999999999999999999999999999976 31
Q ss_pred CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh---------------
Q 041151 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--------------- 304 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--------------- 304 (463)
. ...+... + ..+++.|++|++.+.+| +|++++ ++++++.+.....
T Consensus 181 ---~-~~~~~~~--------~---~d~~~~s~~K~l~~~~g--~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 240 (379)
T 3ke3_A 181 ---V-WLDMKEL--------G---IDVLISAPQKGWSSTPC--AGLVML---SAAAIKKVESTESNCFSLDLKQWLTIMR 240 (379)
T ss_dssp ---C-CCCHHHH--------T---CSEEEECTTTTTCSCCC--EEEEEE---CHHHHHHHHTCCCSCSTTCHHHHHHHHH
T ss_pred ---c-ccccccc--------C---CCEEEecchhhcCCCCc--eEEEEE---CHHHHHhhhcCCCCceeecHHHHHHHHH
Confidence 1 2233222 1 23788999999843334 899984 8888887764211
Q ss_pred --------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCCc---eeE
Q 041151 305 --------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVCNFTEG---AMY 372 (463)
Q Consensus 305 --------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g---~~~ 372 (463)
...+++...+.++.++++ ...++ .++++++++++++++.+.|+++ |+.+..+.+ +..
T Consensus 241 ~~~~g~~~~~~t~~~~~~~a~~aal~----------~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i 309 (379)
T 3ke3_A 241 AYENGGHAYHATMPTDSLRQFRDAIL----------EAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGV 309 (379)
T ss_dssp HHHTTSCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSE
T ss_pred hhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceE
Confidence 012555566666656652 12222 4678888999999999999988 887765542 222
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--CCCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--KEGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
.. +..+.. +... ...|.++||.+.+|..+.. +.+.+.+|+|+. ++++|+++++++|+++++
T Consensus 310 ~~--~~~~~~------------~~~~-~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~ 374 (379)
T 3ke3_A 310 VV--SYTERD------------DMHK-GSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALD 374 (379)
T ss_dssp EE--EECSCH------------HHHS-SHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred EE--EccCCc------------chHH-HHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 22 122211 1111 3557788999999986643 223468999998 788999999999999988
Q ss_pred HHH
Q 041151 449 EFM 451 (463)
Q Consensus 449 ~~~ 451 (463)
++.
T Consensus 375 ~~~ 377 (379)
T 3ke3_A 375 EVL 377 (379)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 190
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.91 E-value=2.1e-22 Score=203.17 Aligned_cols=273 Identities=12% Similarity=0.099 Sum_probs=179.0
Q ss_pred CccCCC--CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c-------------
Q 041151 101 GAYSDS--RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F------------- 162 (463)
Q Consensus 101 ~~Y~~~--~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~------------- 162 (463)
+.|+.. ....++++.++++++ .+++++|+|+++++..++.+++ ++||+|+++ +
T Consensus 48 ~~y~~~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 48 YVYARQKDPTAKALEERLKALEG--------ALEAVVLASGQAATFAALLALL-RPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred cCcCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 466643 346788888888874 3489999999999999999997 899999997 1
Q ss_pred -CceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 -HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 -g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|.++ ....+|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.+.+ .
T Consensus 119 ~g~~~--~~~~~~~-~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~-~ 185 (412)
T 2cb1_A 119 MGVTV--RYVDPEP-EAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGAAGA-L 185 (412)
T ss_dssp TTCEE--EEECSSH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGTTTT-S
T ss_pred cCCEE--EEECCCH-HHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCccccc-c
Confidence 2222 1112357 999998876 8999999999999999997 88888899999999999999987522 1
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh--------------------------hH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP--------------------------KT 295 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~--------------------------~~ 295 (463)
.... . . +..+++.|+||++ +.||.|+|++++.+ +. ++
T Consensus 186 ---~~~~-~----~-------~~di~~~S~~K~~-~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (412)
T 2cb1_A 186 ---CRPL-A----W-------GAHVVVESLTKWA-SGHGSVLGGAVLSR-ETELWRNYPQFLQPDLKGQIPWEALRARCF 248 (412)
T ss_dssp ---CCGG-G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEEC-CCSGGGGSGGGGCC-------HHHHGGGHH
T ss_pred ---CCcc-c----c-------CCeEEEECCcccc-cCCCCcEEEEEEec-cccccccccccccccccccchhhccchHHH
Confidence 1111 1 1 2458999999999 78999999998732 11 34
Q ss_pred HHHHHhhh-h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cC-----
Q 041151 296 VDEIYKIA-S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FT----- 367 (463)
Q Consensus 296 ~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~----- 367 (463)
.+.++... . .....++.....+...++ .+....++..++.+.+.+.|.+.|++..+ .|
T Consensus 249 ~~~~r~~~~~~~g~~~~~~~a~~~~~~l~--------------~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~ 314 (412)
T 2cb1_A 249 PERVRTLGLSLCGMALSPFNAYLLFQGLE--------------TVALRVARMSETARFLAERLQGHPKVKALRYPGLPED 314 (412)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHGG--------------GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTC
T ss_pred HHHHHHHHHHhcCCCCChHHhHHHHcCCc--------------hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCC
Confidence 44444433 2 122223333333332321 11223444567788889999888887743 22
Q ss_pred ------------CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC---------CCC------CC
Q 041151 368 ------------EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG---------FGQ------KE 420 (463)
Q Consensus 368 ------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~---------f~~------~~ 420 (463)
.+++ +. +.+. +.+.+...+.+.||.+ .++. +.. ++
T Consensus 315 p~~~~~~~~~~~~~~i-v~--~~~~--------------~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~ 376 (412)
T 2cb1_A 315 PAHRNARKYLASGGPI-LT--LDLG--------------DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKE 376 (412)
T ss_dssp TTHHHHHHHCSSSCSE-EE--EECS--------------SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCH
T ss_pred ccHHHHHHhCCCCceE-EE--EEeC--------------CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCH
Confidence 2233 33 2321 2233567788899998 7642 210 00
Q ss_pred --------CCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 421 --------GIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 421 --------~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
..+.+|+|++ .++++++.+.++|+
T Consensus 377 ~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 377 EARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp HHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 1468999999 45555555555554
No 191
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.91 E-value=2.5e-22 Score=207.66 Aligned_cols=317 Identities=11% Similarity=0.002 Sum_probs=210.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE---EcCCcHHHHHHHHHHHhcCC----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF---LTDGASKGVMQTLNCVIRGE---- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~---~t~G~~~al~~~~~~l~~~~---- 154 (463)
++.+.+++.+++.. ....|....+..++++.+.+++.+.+|.+.+++++. +|+|+++++..++.++. .+
T Consensus 69 ~~~v~~~l~~~~~~---~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~-~~~~~~ 144 (502)
T 3hbx_A 69 EPECDKLIMSSINK---NYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK-RKWQNK 144 (502)
T ss_dssp CHHHHHHHHHTTTC---BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHhcc---CCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH-HHHhHH
Confidence 77888888877765 223333333467888899999988888775566554 48999999999998876 44
Q ss_pred ----CC-----EEEEc-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 155 ----GD-----GVVLL-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 155 ----gd-----~Vlvp-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
|+ .|+++ .|+.+ + .+.+.+|+ +.|++++.+ ++++|++++|+||||.
T Consensus 145 ~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~------~t~~v~~~~~~n~tG~ 217 (502)
T 3hbx_A 145 RKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP-QQAVDMVDE------NTICVAAILGSTLNGE 217 (502)
T ss_dssp HHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCH-HHHHHHCCT------TEEEEEEEBSCTTTCC
T ss_pred HHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCH-HHHHHHHhh------CCEEEEEecCCCCCCc
Confidence 76 88887 56655 2 23488999 999999987 7999999999999999
Q ss_pred CCCHHHHHHHHHHhhhC------CeEEEeccccccccc---CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 208 CLSEANLREILRFCYQE------NLVLLGDEVYQQNIY---QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 208 ~~s~~~l~~l~~~a~~~------~~~vi~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
+.+ +++|.++|+++ ++++++|++|+.+.. .+..+ ..+ ...+-.++..|.+|++ .
T Consensus 218 ~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~-~~~-----------~~~~~D~v~~s~hK~l--~ 280 (502)
T 3hbx_A 218 FED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDF-----------RLPLVKSINVSGHKYG--L 280 (502)
T ss_dssp BCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-CST-----------TSTTEEEEEEETTTTT--C
T ss_pred ccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc-ccc-----------CCCCceEEEECccccc--C
Confidence 977 66677778888 999999999986531 11111 111 1112346778999975 3
Q ss_pred CCceeEEEEecCCChhHHHHHHhhh-hh--------c--ccC---ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 279 CGQRGGYFEMTNIPPKTVDEIYKIA-SI--------A--LSP---NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 279 ~G~R~G~~~~~~~~~~~~~~l~~~~-~~--------~--~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
++.++||+++ .+++.+....... .. . .+. ....+.++...+ ..+....+.++
T Consensus 281 ~p~g~G~~~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~l------------g~~g~~~~~~~ 346 (502)
T 3hbx_A 281 VYAGIGWVIW--RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL------------GHEGYRNVMEN 346 (502)
T ss_dssp CCSSCEEEEE--SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred CCCCeEEEEE--eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 6677999887 5555542221111 10 0 111 112222222221 12234556777
Q ss_pred HHHHHHHHHHHhhcCCCcccccC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 345 LRRRARMMTDGFNSCRNVVCNFT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~pg~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
..++++++.+.|++++++.+..+ ..++ +++++.-... -+...+.+.|.++||.+..........+.
T Consensus 347 ~~~~a~~l~~~L~~~~~~~~~~~~~~~~~-v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~ 414 (502)
T 3hbx_A 347 CRENMIVLREGLEKTERFNIVSKDEGVPL-VAFSLKDSSC-----------HTEFEISDMLRRYGWIVPAYTMPPNAQHI 414 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEECSCSSSSSE-EEEEESSCSS-----------CCHHHHHHHHHTTTCBCCEEECCTTCTTC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCceE-EEEEecCCCc-----------CCHHHHHHHHHhCCcEEeeccCCcccCCc
Confidence 88888999999999977888765 4444 4433431111 12223456677889987543332222345
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.++||+++ .+.++++.+++.|+++++++.+
T Consensus 415 ~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 415 TVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999 7889999999999999987754
No 192
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.91 E-value=9.5e-24 Score=214.12 Aligned_cols=312 Identities=11% Similarity=0.057 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... ....|+. +.+.++++.+.+..+ .+++|++|+|+++++..+++.... .+++.|++
T Consensus 71 ~p~v~~A~~~~~~~~--~~~~~~~-----~~~~~la~~l~~~~~---~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~ 140 (429)
T 4e77_A 71 HPAIRQAVIEAVERG--LSFGAPT-----EMEVKMAQLVTDLVP---TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIK 140 (429)
T ss_dssp CHHHHHHHHHHHTTC--SCCSSCC-----HHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhC--cccCCCC-----HHHHHHHHHHHhhCC---CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEE
Confidence 789999999888762 2223322 344445555544433 478999999999999999985421 24566666
Q ss_pred c----cCcee---------------cC-CCc------------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTTW---------------KR-QQI------------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~~---------------~~-~~~------------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
. +|... +. .+. ..|+ +.|++.+++. +.++ ++++++|+||+|.+
T Consensus 141 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~---~~~~-~~vi~ep~~~~~g~ 215 (429)
T 4e77_A 141 FEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDL-ASVRQAFEQY---PQEV-ACIIVEPVAGNMNC 215 (429)
T ss_dssp ETTCCCC------------------CCCTTSCGGGGTTEEEECTTCH-HHHHHHHHHS---TTTE-EEEEECSSBCTTSC
T ss_pred EcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCH-HHHHHHHHhc---CCCE-EEEEECCccCCCCC
Confidence 4 22110 00 000 0178 9999998852 1134 44567787776644
Q ss_pred CC--HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 209 LS--EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 209 ~s--~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+. ++.+++|.++|++||+++|+||+|.++ .. +. .... . .++. .. -+.||||++ + +|+|+||+
T Consensus 216 ~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~-g~-~~~~-~---~~~~--~p-----di~t~sK~~-~-~G~~~G~~ 279 (429)
T 4e77_A 216 IPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RV-AL-AGAQ-D---YYHV--IP-----DLTCLGKII-G-GGMPVGAF 279 (429)
T ss_dssp BCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TT-BT-TCHH-H---HTTC--CC-----SEEEEEGGG-G-TTSCCEEE
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCc-cc-Cc-chHH-H---hcCC--CC-----Ceeeecccc-c-CCCCeEEE
Confidence 44 445999999999999999999999987 31 22 1111 1 1111 11 135899999 6 79999999
Q ss_pred EecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 041151 287 EMTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS---- 358 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---- 358 (463)
+ +++++++.+... ...+++.+++.+.++.++|+.. + .+...++++++.+.+.+.|++
T Consensus 280 ~---~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-----------~-~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (429)
T 4e77_A 280 G---GRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEI-----------S-QVGVYETLTELTDSLATGLRHAAKE 344 (429)
T ss_dssp E---ECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHH-----------T-STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E---ECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHH-----------H-hcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 588888887653 2246678999998888876411 0 012333444455555554443
Q ss_pred CCCcccccCCceeEEeeeccCCh---hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCc
Q 041151 359 CRNVVCNFTEGAMYSFPQIRLPP---KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEED 435 (463)
Q Consensus 359 ~pg~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~ 435 (463)
. ++....+..+.++|+.+.-.. .+... .........++ ...|.++||.+.|+.. ..+|+++..++++
T Consensus 345 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~Gi~v~~~~~-------~~~~~~~~~t~e~ 414 (429)
T 4e77_A 345 E-NIPLVVNHVGGMFGLFFTNADTVTCYQDV-MNCDVERFKRF-FHLMLEEGVYLAPSAF-------EAGFMSLAHSNED 414 (429)
T ss_dssp T-TCCCEEEEETTEEEEECCSSSCCCSHHHH-HTSCHHHHHHH-HHHHHHTTEECCSSTT-------SCEECCTTCCHHH
T ss_pred C-CCceEEEEeeeEEEEEEccCccccccccc-ccccHHHHHHH-HHHHHHCCeEEeecCC-------CCEEEeccCCHHH
Confidence 3 333333344566665443210 00000 00000001344 4445677999998642 1467777789999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDE 449 (463)
Q Consensus 436 i~~~~~~l~~~l~~ 449 (463)
+++++++|++++++
T Consensus 415 i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 415 IQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 193
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.90 E-value=5e-23 Score=208.52 Aligned_cols=307 Identities=16% Similarity=0.134 Sum_probs=195.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH---HhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC---VIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~V 158 (463)
|+.+++++.+.+... . .|+ +..++++++++++.++++ .+++|++++|+++++..+++. +. ++ +.|
T Consensus 70 ~p~v~~a~~~~~~~~--~--~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~al~~ar~~~-~~-~~v 137 (424)
T 2e7u_A 70 HPKVLARVRETLERG--L--TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATMSALRLARGYT-GR-PYI 137 (424)
T ss_dssp CHHHHHHHHHHHHTC--S--CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHHHHHHHHHHHH-CC-CEE
T ss_pred CHHHHHHHHHHHHhC--C--CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh-CC-CEE
Confidence 789999999888751 1 232 234677777777766643 578999999999999999986 54 44 555
Q ss_pred EEc----cCcee-----c-----------C---------CCcc---cChHHHHHHHHHHHHhcCCceeEEEEECCCCC-C
Q 041151 159 VLL----FHTTW-----K-----------R---------QQIG---VLIINDLQQSVAQARSKGITVRAMVIINPGNP-T 205 (463)
Q Consensus 159 lvp----~g~~~-----~-----------~---------~~~~---~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP-t 205 (463)
+++ +|... . . .... .|+ +.|++.+++.. .++++ ++++|+|+ |
T Consensus 138 i~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~-vi~ep~~~~~ 212 (424)
T 2e7u_A 138 VKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDP-EGLREVLKRRG---EEIAA-IIFEPVVGNA 212 (424)
T ss_dssp EEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCH-HHHHHHHHHHG---GGEEE-EEECSSBCTT
T ss_pred EEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCH-HHHHHHHHhCC---CCEEE-EEEeCCCCCC
Confidence 554 22110 0 0 0000 378 99999987521 14554 55677665 8
Q ss_pred ccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 206 GQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 206 G~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
|.+. +.+.+++|.++ ++||++||+||+|.++.. +. .... . .++. .. . +.||||++ + +|+|+|
T Consensus 213 G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~--g~-~~~~-~---~~~~--~~--d---i~s~sK~l-~-~G~~~G 275 (424)
T 2e7u_A 213 GVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRL--AF-GGAT-E---LLGL--KP--D---LVTLGKIL-G-GGLPAA 275 (424)
T ss_dssp SCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTS--ST-THHH-H---HHTC--CC--S---EEEECGGG-G-TTSSCE
T ss_pred CCcCCCHHHHHHHHHH-HHcCCEEEEecCcccccc--ch-hHHH-H---HhCC--Cc--c---hhhhhhhh-h-CCcceE
Confidence 9765 79999999999 999999999999997632 21 1111 1 1111 12 1 24999999 6 599999
Q ss_pred EEEecCCChhHHHHHHhhh----hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Q 041151 285 YFEMTNIPPKTVDEIYKIA----SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC- 359 (463)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 359 (463)
|++ +++++++.+.... ..+++.+++.+.++.++|+ ..++.+++.++++++++++.+.|+++
T Consensus 276 ~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~ 341 (424)
T 2e7u_A 276 AYA---GRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLE-----------LLEENPGYYAYLEDLGARLEAGLKEVL 341 (424)
T ss_dssp EEE---ECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHH-----------HHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE---EcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHH-----------HHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999 4888888776521 2356778889888887763 22111346677777778888777663
Q ss_pred --CCcc-cccCCceeEEeeeccC-Ch-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcC
Q 041151 360 --RNVV-CNFTEGAMYSFPQIRL-PP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEE 434 (463)
Q Consensus 360 --pg~~-~~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e 434 (463)
.++. ...+.| .++|+.+.- +. .+.+. ......+..++. ..|.++||.+.|+.. ..+|+++..+++
T Consensus 342 ~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~Gv~v~~~~~-------~~~~~~~~~t~~ 411 (424)
T 2e7u_A 342 KEKGLPHTVNRVG-SMITVFFTEGPVVTFQDA-RRTDTELFKRFF-HGLLDRGIYWPPSNF-------EAAFLSVAHREE 411 (424)
T ss_dssp HHTTCCCEEEEET-TEEEEESSSSCCCSHHHH-TTSCHHHHHHHH-HHHHTTTEECCSSSS-------SCEECCTTCCHH
T ss_pred HhCCCceEEEeec-eEEEEEEeCCCCcchhhh-cccCHHHHHHHH-HHHHHCCeEEeccCC-------CceEeeccCCHH
Confidence 1332 234444 467755531 00 00000 000000123444 445578999999742 147888778999
Q ss_pred cHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKF 446 (463)
Q Consensus 435 ~i~~~~~~l~~~ 446 (463)
++++++++|+++
T Consensus 412 ~i~~~l~~l~~~ 423 (424)
T 2e7u_A 412 DVEKTLEALRKA 423 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 194
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.90 E-value=3.2e-22 Score=200.51 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
..+|++.++++++ .+++++++|+++++..++.+++ ++||+|+++ .|.++ ..+
T Consensus 68 ~~~l~~~la~~~g--------~~~~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~- 137 (392)
T 3qhx_A 68 RTALEAALAAVED--------AAFGRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA- 137 (392)
T ss_dssp HHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC-
T ss_pred HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC-
Confidence 4577888887764 3478888888999999999997 899999997 23333 111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
..|+ +.|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+ . . .. .
T Consensus 138 -~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~-~---~~-~ 200 (392)
T 3qhx_A 138 -LADL-DAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-Q-Q---PL-S 200 (392)
T ss_dssp -TTCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-C-C---GG-G
T ss_pred -CCCH-HHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-C-C---hH-H
Confidence 1178 999999886 8999999999999999987 88888899999999999999986532 1 1 11 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
+ +..+++.|+||.+ |.+| +|+||++. .++++++.+..... .+...++..+.++...++.
T Consensus 201 ----~-------~~di~~~S~sK~l-g~~g~~~~G~v~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~----- 261 (392)
T 3qhx_A 201 ----L-------GADVVLHSTTKYI-GGHSDVVGGALVT--NDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT----- 261 (392)
T ss_dssp ----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----
T ss_pred ----h-------CCcEEEEcCcccc-CCCCCceEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----
Confidence 1 1348999999999 7677 89999995 34688888877765 5667777777777666541
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCC----------------ceeEEeeeccCChhhHHHHhhcC
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTE----------------GAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
+....++..++.+.+.+.|++.|++..+ .|. .|..+++.+ +.+.
T Consensus 262 ---------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l--~~~~-------- 322 (392)
T 3qhx_A 262 ---------LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRM--RAGR-------- 322 (392)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE--TTCH--------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEe--CCcH--------
Confidence 2223445667777788888877665322 111 133455434 3210
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCC---C--------------CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQ---K--------------EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~---~--------------~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
...+.+...++..|+.+..|+.+.. + -..+.+|||++. ++.++.++.|.+++
T Consensus 323 --~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al 391 (392)
T 3qhx_A 323 --TAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL 391 (392)
T ss_dssp --HHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred --HHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence 0222233446666788888876531 0 124579999994 47777777777665
No 195
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.90 E-value=3.1e-22 Score=201.08 Aligned_cols=269 Identities=12% Similarity=0.125 Sum_probs=174.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KR 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~ 168 (463)
....++++.++++++ .+ +.++++++++++..++.+++ ++||+|+++ + |.++ ..
T Consensus 65 ~~~~~l~~~la~~~g------~~--~~i~~~sG~~a~~~~l~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (398)
T 1gc0_A 65 PTLNLLEARMASLEG------GE--AGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 135 (398)
T ss_dssp HHHHHHHHHHHHHHT------CS--EEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhC------CC--cEEEECCHHHHHHHHHHHHh-cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 345678888888774 22 44445555799999999997 899999997 2 2222 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
+ ..|+ +.+++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..+.+. . ++
T Consensus 136 ~--~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~--~---~~ 198 (398)
T 1gc0_A 136 D--MADL-QALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ--R---PL 198 (398)
T ss_dssp C--TTCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC--C---GG
T ss_pred C--CCCH-HHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccC--C---ch
Confidence 1 1377 999998876 8999999999999999987 788888999999999999999976551 1 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHH-HHHhhhhh--cccCChHHHHHHHHhcCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVD-EIYKIASI--ALSPNVPAQIFMGLMVNPL 324 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~q~~~~~~l~~~ 324 (463)
. + + ..+++.|+||++ +.+|+|+ ||++. +++.++ .+...... +.+.+.+.+.++...++.
T Consensus 199 -~----~----~---~d~~~~S~sK~~-~~~~~~~~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 261 (398)
T 1gc0_A 199 -E----L----G---ADLVVHSATKYL-SGHGDITAGIVVG---SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT- 261 (398)
T ss_dssp -G----G----T---CSEEEEETTTTT-TCSSSCCCEEEEE---CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-
T ss_pred -h----h----C---ceEEEECCcccc-CCCCCCeEEEEEE---ChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-
Confidence 1 1 1 348999999999 8899998 99984 776655 55544432 345677777776666531
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--------------ccccC----CceeEEeeeccCChhhHHH
Q 041151 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV--------------VCNFT----EGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~--------------~~~~~----~g~~~~~~~~~~~~~~~~~ 386 (463)
.....++..++.+.+.+.|++.|++ .+..+ .++++.+ .+. .
T Consensus 262 -------------~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~--~----- 320 (398)
T 1gc0_A 262 -------------LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELK--G----- 320 (398)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEE-EET--T-----
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EEC--C-----
Confidence 1223445566666667777664332 22222 3555554 232 1
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeC---CCCCC------------CC--------CCCcEEEEEecCCcCcHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVP---GSGFG------------QK--------EGIFHLRTTILPAEEDMPAIMESF 443 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~p---g~~f~------------~~--------~~~~~lRis~~~~~e~i~~~~~~l 443 (463)
..+.+..++.+.|+.++. |+.+. .+ -..+++|||++. ++.++.++.|
T Consensus 321 --------~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--~~~~~~i~~l 390 (398)
T 1gc0_A 321 --------GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL--EDIDDLLADV 390 (398)
T ss_dssp --------HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHH
T ss_pred --------CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHH
Confidence 223456778888988776 32210 00 013689999994 3444555555
Q ss_pred HHHHHH
Q 041151 444 KKFNDE 449 (463)
Q Consensus 444 ~~~l~~ 449 (463)
.+++++
T Consensus 391 ~~al~~ 396 (398)
T 1gc0_A 391 QQALKA 396 (398)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 196
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.90 E-value=2.2e-23 Score=207.06 Aligned_cols=290 Identities=12% Similarity=0.141 Sum_probs=196.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++.+.+++.+.+.. ..|.+..+..++|++++++++ .+++++++|+++++..++.++ + ++||+|++
T Consensus 15 ~~~v~~a~~~~~~~-----~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~-~~gd~Vi~ 80 (367)
T 3nyt_A 15 KDKIDAGIQRVLRH-----GQYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGV-GPGDEVIT 80 (367)
T ss_dssp HHHHHHHHHHHHHH-----CCCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhc-----CCccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCC-CCcCEEEE
Confidence 67778888777766 245566678899999999985 248999999999999999999 7 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ ..+.+.+|+ +.|++++++ ++++|+ |+||||...+ +++|.++|+
T Consensus 81 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~ 147 (367)
T 3nyt_A 81 PGFTYVATAETVALLGAKPVYVDIDPRTYNLDP-QLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIAS 147 (367)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCG-GGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCccCCcCH-HHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHH
Confidence 7 56665 223478999 999999876 789887 8899998766 777888899
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
++|++||+|++|+.+....+..... + . .+++.|| ||.+ +.+|. +|+++. .++++.+.+.
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~~~~~-------~----~----di~~~Sf~~~K~l-~~~g~-gg~~~~--~~~~l~~~~~ 208 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGKRSCN-------L----S----TVACTSFFPSAPL-GCYGD-GGAIFT--NDDELATAIR 208 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTEETTS-------S----S----SEEEEECCTTSSS-CCSSC-CEEEEE--SCHHHHHHHH
T ss_pred HcCCEEEEECccccCCeECCeeccC-------C----C----CEEEEECCCCCcC-CCcCc-eeEEEe--CCHHHHHHHH
Confidence 9999999999998532211111111 1 1 3788897 8999 76576 889885 4688888887
Q ss_pred hhhhh-------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-
Q 041151 301 KIASI-------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF- 366 (463)
Q Consensus 301 ~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~- 366 (463)
..... ++..+.+...++...+ +.++...++.+++.+.+.+.|.++ ++.+..
T Consensus 209 ~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l--------------~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~ 273 (367)
T 3nyt_A 209 QIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKL--------------EIFEEEIALRQKVAAEYDLSLKQV-GIGTPFI 273 (367)
T ss_dssp HHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHH--------------HTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCC
T ss_pred HHHhcCCCcCceeeccCcCCCccHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccC-CeeccCC
Confidence 75431 2334444444443332 223345556677777888888877 554432
Q ss_pred CCceeEEe--eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--------CC---------CCcEEEE
Q 041151 367 TEGAMYSF--PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--------KE---------GIFHLRT 427 (463)
Q Consensus 367 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------~~---------~~~~lRi 427 (463)
+.+....| +.+..+ +.+.+...|.++||.++++..... .. ....+|+
T Consensus 274 ~~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 339 (367)
T 3nyt_A 274 EVNNISVYAQYTVRMD--------------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSL 339 (367)
T ss_dssp CTTEECCCSSEEEECS--------------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEE
T ss_pred CCCCceeeEEEEEEeC--------------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEc
Confidence 22221111 112222 233345667888999987643110 00 1347999
Q ss_pred Eec--CCcCcHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~ 446 (463)
++. .+++|++.+++.|+++
T Consensus 340 p~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 340 PMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CCCTTCCHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 998 7889999998888654
No 197
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.90 E-value=6e-22 Score=198.65 Aligned_cols=308 Identities=11% Similarity=0.091 Sum_probs=194.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCC--CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRG--IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g--~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~V 158 (463)
++++++++.+.+.. .|.++.| ..++|++++++++ .++|++|+|+++++..++.++ + ++||+|
T Consensus 11 ~~~v~~a~~~~~~~------~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~-~~gd~V 75 (394)
T 1o69_A 11 GGNELKYIEEVFKS------NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGV-KQDDIV 75 (394)
T ss_dssp -CCHHHHHHHHHHH------TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred CHHHHHHHHHHHHc------CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCCCEE
Confidence 66788888888765 3656567 8899999999985 278999999999999999999 7 899999
Q ss_pred EEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 159 VLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 159 lvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+++ .|.++ ...++.+|+ +.|++.+++. ..++++|++++ |||...+ +++|.++|
T Consensus 76 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~l~ 145 (394)
T 1o69_A 76 LASSFTFIASVAPICYLKAKPVFIDCDETYNIDV-DLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVEIC 145 (394)
T ss_dssp EEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCH-HHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCH-HHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHHHH
Confidence 997 56655 335677999 9999998751 01489999885 8997655 77888889
Q ss_pred hhCCeEEEeccccc-ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 222 YQENLVLLGDEVYQ-QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 222 ~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
+++|++||+|++|+ .+.+ .+....+ + . + +.+.||||.. +++|.|+||+++ .++++++.+.
T Consensus 146 ~~~~~~li~Dea~~~g~~~-~~~~~~~-------~----~--~--~~~~s~s~~K-~l~~~~~G~~~~--~~~~l~~~l~ 206 (394)
T 1o69_A 146 KENDIVLIEDAAEALGSFY-KNKALGT-------F----G--E--FGVYSYNGNK-IITTSGGGMLIG--KNKEKIEKAR 206 (394)
T ss_dssp HHTTCEEEEECTTCTTCEE-TTEETTS-------S----S--S--EEEEECCTTS-SSCCSSCEEEEE--SCHHHHHHHH
T ss_pred HHcCCEEEEECcCccccee-CCccccc-------c----c--C--cEEEEEeCCc-cCCCCCceEEEE--CCHHHHHHHH
Confidence 99999999999998 4444 2211111 1 1 1 4556664333 345779999995 3578888887
Q ss_pred hhhhhcc-c--------------CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 301 KIASIAL-S--------------PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 301 ~~~~~~~-~--------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
....... . .+.+...++...+ +++++..++++++++++.+.|.++ +.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--------------~~l~~~~~~~~~~~~~l~~~L~~~--~~~~ 270 (394)
T 1o69_A 207 FYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM--------------EVLEQRVLKKREIYEWYKEFLGEY--FSFL 270 (394)
T ss_dssp HHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH--------------TTHHHHHHHHHHHHHHHHHHHTTT--EECC
T ss_pred HHHHhccccCccccccccCcccCcCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccc--cccc
Confidence 7643111 1 1112221211112 223345677888888999999875 5544
Q ss_pred cCC----cee-EEeeeccCChhh-H--HH--H-hhcCC--CChHHHHHHHHHhcCeEeeCCCCCC--CC--CC-------
Q 041151 366 FTE----GAM-YSFPQIRLPPKA-I--EA--A-KRAGK--VPDVFYCLRLLEATGISTVPGSGFG--QK--EG------- 421 (463)
Q Consensus 366 ~~~----g~~-~~~~~~~~~~~~-~--~~--~-~~~~~--~~~~~~~~~ll~~~gI~v~pg~~f~--~~--~~------- 421 (463)
++. +++ ++++.++..... . .. . ...+. ..+.+.+.+.|.++||.+++|..+. .+ ..
T Consensus 271 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~ 350 (394)
T 1o69_A 271 DELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNG 350 (394)
T ss_dssp CCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECS
T ss_pred CCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCCh
Confidence 432 343 345444311000 0 00 0 00000 0023334566778899999985431 00 00
Q ss_pred ------CcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 422 ------IFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 422 ------~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
...+|+.+. .+++|++++++.|+++++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 351 NSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 023444445 8899999999999877643
No 198
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.90 E-value=4.2e-21 Score=198.79 Aligned_cols=331 Identities=10% Similarity=0.036 Sum_probs=212.5
Q ss_pred cHHHH-HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------
Q 041151 82 PADAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG------- 153 (463)
Q Consensus 82 p~~~~-~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------- 153 (463)
++.++ +.+..++.. ....|....+..++++++++|+.+.+|.+.+++.+++|+|+++++..++.++. +
T Consensus 108 ~~~~~~e~l~~~~~~---~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~-~~~~~~~~ 183 (511)
T 3vp6_A 108 IIGLAGEWLTSTANT---NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAAR-YKYFPEVK 183 (511)
T ss_dssp HHHHHHHHHHHHHCC---CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHH-HHHCTHHH
T ss_pred HHHHHHHHHHHHhcc---CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHH-HHhhhhhh
Confidence 33443 444445543 55678777788899999999999999988767899999999999999888775 3
Q ss_pred -------CCCEEEEc-------------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 154 -------EGDGVVLL-------------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 154 -------~gd~Vlvp-------------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
+++.|+++ .|. ++ .+..+.+|+ +.|++++++....|..+++|++++|+||||
T Consensus 184 ~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~-~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G 262 (511)
T 3vp6_A 184 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIP-ADFEAKILEAKQKGYVPFYVNATAGTTVYG 262 (511)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCH-HHHHHHHHHHHHTTCEEEEEEEEBSCSSSC
T ss_pred hcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCH-HHHHHHHHHHHhcCCCcEEEEEecCCCCCc
Confidence 56788887 454 44 345688999 999999988655555589999999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 207 ~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
.+-+ +++|+++|++||+|+++|++|+......+.....+..+ .. -.+++.+.+|++ +.| ..+|++
T Consensus 263 ~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~--------~~--aDsv~~~~hK~l-~~p-~g~g~l 327 (511)
T 3vp6_A 263 AFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI--------ER--ANSVTWNPHKMM-GVL-LQCSAI 327 (511)
T ss_dssp CBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG--------GG--CSEEEECTTSTT-CCC-SCCEEE
T ss_pred cccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCC--------cc--CCEEEECccccc-CCC-cCeEEE
Confidence 9954 88899999999999999999987654111111111111 11 125678999998 544 568888
Q ss_pred EecCCChhHHHHHHhhhh-hc-----------------cc----CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 287 EMTNIPPKTVDEIYKIAS-IA-----------------LS----PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~-----------------~~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
++ .+++++........ .. .. ...+...++..++ ....++++.++
T Consensus 328 ~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~------------g~~gl~~~~~~ 393 (511)
T 3vp6_A 328 LV--KEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK------------GTVGFENQINK 393 (511)
T ss_dssp EE--SSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred EE--eCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH------------hHHHHHHHHHH
Confidence 87 56666555432211 00 00 1112222222221 12345677888
Q ss_pred HHHHHHHHHHHhhcCCCccccc---CCceeEEeeeccCChhhHHH----HhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 345 LRRRARMMTDGFNSCRNVVCNF---TEGAMYSFPQIRLPPKAIEA----AKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~pg~~~~~---~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
..++.+++.+.|++.||+++.. |..+.+.| ++ .|...-+. ............+.+.|.++|+.+.. ..+.
T Consensus 394 ~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f-~~-~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~ 470 (511)
T 3vp6_A 394 CLELAEYLYAKIKNREEFEMVFNGEPEHTNVCF-WY-IPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQ 470 (511)
T ss_dssp HHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEE-EE-CCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEE-EE-eCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEe
Confidence 8999999999999989998875 55665544 22 23221000 00000000112234556667865543 1111
Q ss_pred CCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 418 ~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~ 450 (463)
. .+.+++|++++ .+.++++.+++.|+++.+.+
T Consensus 471 ~-~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 471 G-DKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp T-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred C-CceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 23347999994 68899999999988876654
No 199
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.89 E-value=4.4e-22 Score=199.35 Aligned_cols=266 Identities=11% Similarity=0.093 Sum_probs=179.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQ 169 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~ 169 (463)
...+|++.++++++ . +++++++++++++..++.+++ ++||+|+++ .|.++ ..+
T Consensus 60 ~~~~l~~~la~~~g------~--~~~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 130 (389)
T 3acz_A 60 TVEQFEEMVCSIEG------A--AGSAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID 130 (389)
T ss_dssp HHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 45688889988874 2 256666667799999999987 899999997 23333 111
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..|+ +.+++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..+.+ . . ++.
T Consensus 131 --~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~-~-~---~~~ 193 (389)
T 3acz_A 131 --TSDV-EKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCF-L-K---PLE 193 (389)
T ss_dssp --TTCH-HHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-C-C---GGG
T ss_pred --CCCH-HHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-c-C---ccc
Confidence 1478 999998876 7999999999999999997 78888899999999999999987643 1 1 111
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCCh-hHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPP-KTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
+ +..+++.|+||++ +.+|.|+ ||++. ++ ++++.+..... .+.+.+...+.++...++.
T Consensus 194 -----~-------~~di~~~S~sK~~-~~~~~~~~G~v~~---~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~--- 254 (389)
T 3acz_A 194 -----L-------GADIALHSVSKYI-NGHGDVIGGVSSA---KTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT--- 254 (389)
T ss_dssp -----T-------TCSEEEEETTTTT-TCSSCCCCEEEEE---SSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---
T ss_pred -----c-------CCeEEEECChhhc-cCCCCceeEEEEE---CcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---
Confidence 1 2358999999999 8899998 99995 66 88888877664 4455566666666666541
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcccccC----CceeEEeeeccCChhhHHHHh
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSC--------------RNVVCNFT----EGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------------pg~~~~~~----~g~~~~~~~~~~~~~~~~~~~ 388 (463)
.....++..++.+.+.+.|++. |++.+..+ .|+++.+ .+. .
T Consensus 255 -----------l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~-~l~--~------- 313 (389)
T 3acz_A 255 -----------LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF-EMK--S------- 313 (389)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EES--S-------
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE-EEC--C-------
Confidence 1112223334444444444443 33333221 2444433 232 1
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeC---C------CCCCCC--------------CCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVP---G------SGFGQK--------------EGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~p---g------~~f~~~--------------~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+.+..++.+.||.+++ | ..+... -..+++|||++. ++.++.++.|.+
T Consensus 314 -------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--~~~~~li~~l~~ 384 (389)
T 3acz_A 314 -------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI--ENVDDIIADLKQ 384 (389)
T ss_dssp -------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHH
Confidence 22355778888998877 3 222110 013689999995 378888888888
Q ss_pred HHH
Q 041151 446 FND 448 (463)
Q Consensus 446 ~l~ 448 (463)
+++
T Consensus 385 al~ 387 (389)
T 3acz_A 385 ALE 387 (389)
T ss_dssp HHT
T ss_pred HHh
Confidence 774
No 200
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.89 E-value=3e-21 Score=199.83 Aligned_cols=314 Identities=11% Similarity=0.078 Sum_probs=204.0
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------CC-----C-EEEEc---
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG--------EG-----D-GVVLL--- 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--------~g-----d-~Vlvp--- 161 (463)
....|....+...+++++.+++.+..|.+.+++++++|+|+++++..++.++. . +| + .|+++
T Consensus 120 ~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~-~~~~~~~~~~G~~~~~~~~v~~s~~~ 198 (504)
T 2okj_A 120 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAAR-YKYFPEVKTKGMAAVPKLVLFTSEQS 198 (504)
T ss_dssp BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHH-HHHCTTHHHHCGGGSCCEEEEEETTS
T ss_pred CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHH-HHHhhHHhhcCccccCCeEEEECCcc
Confidence 33456555556778888888888888876547899999999999999998874 3 56 6 67776
Q ss_pred ----------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 ----------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 ----------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|. ++ .+.++.+|+ +.|++++++...+|.++++|++++|+||||.+.+ +++|+++|+++
T Consensus 199 h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~-~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~ 274 (504)
T 2okj_A 199 HYSIKKAGAALGFGTDNVILIKCNERGKIIP-ADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKY 274 (504)
T ss_dssp CTHHHHHHHHTTSCGGGEEEECBCTTSCBCH-HHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCcccEEEEecCCCCCCCH-HHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc
Confidence 333 44 335788999 9999999875555556899999999999999866 77888899999
Q ss_pred CeEEEecccccccccCCCCCc-cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPF-VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
|+++++|++|+.+.+. .... ..+. ++ .. -.+++.|++|++ +.| .++|++++ .++++++......
T Consensus 275 g~~lhvD~a~~~~~~~-~~~~~~~~~----g~----~~--~D~i~~~~hK~~-~~p-~~~g~l~~--~~~~~~~~~~~~~ 339 (504)
T 2okj_A 275 NLWLHVDAAWGGGLLM-SRKHRHKLN----GI----ER--ANSVTWNPHKMM-GVL-LQCSAILV--KEKGILQGCNQMC 339 (504)
T ss_dssp TCEEEEEETTGGGGGG-CTTTGGGGT----TG----GG--CSEEEECTTSTT-CCC-SCCEEEEE--SSTTHHHHHHCCC
T ss_pred CCEEEEehhhhhHHHh-CHhhHhhcC----Cc----cc--CCEEEECchhhc-CCC-cceEEEEE--ECHHHHHHHhcCC
Confidence 9999999999987652 1111 1111 11 11 126778999988 644 68999997 4455555432211
Q ss_pred -hhcc---------------------cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 304 -SIAL---------------------SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 304 -~~~~---------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
.... ....+.+.++..++. ....+++.++..++++++.+.|++.||
T Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~~~~ 407 (504)
T 2okj_A 340 AGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG------------TVGFENQINKCLELAEYLYAKIKNREE 407 (504)
T ss_dssp CSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1110 012334444433331 223455677788899999999999889
Q ss_pred ccccc---CCceeEEeeeccCChhhH------HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 362 VVCNF---TEGAMYSFPQIRLPPKAI------EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 362 ~~~~~---~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
+++.. |..+++.|..+ |.... +-... .......+.+.|.+.|+.+..+..+.. ..+++|++++
T Consensus 408 ~~~~~~~~p~~~~v~f~~~--~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~G~~~~~~~~~~~--~~~~lRis~~~~ 481 (504)
T 2okj_A 408 FEMVFNGEPEHTNVCFWYI--PQSLRGVPDSPQRREK--LHKVAPKIKALMMESGTTMVGYQPQGD--KANFFRMVISNP 481 (504)
T ss_dssp EEESSSSCCSSSCEEEEEC--CGGGSSCCCCHHHHHH--HTTHHHHHHHHHHHHTSCEEEEEEETT--EEEEEEECCCCT
T ss_pred EEEEecCCCCeEEEEEEEe--CccccccccchhhHHH--HHHHHHHHHHHHHhCCcEEEEeeEECC--ceEEEEEEeCCC
Confidence 98874 67777766322 21100 00000 000112233445567854433222321 1248999997
Q ss_pred -CCcCcHHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~~ 450 (463)
++++++++++++|+++++++
T Consensus 482 ~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 482 AATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp TCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 78899999999998887543
No 201
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.89 E-value=1.3e-21 Score=201.74 Aligned_cols=322 Identities=10% Similarity=-0.003 Sum_probs=207.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCC-------CCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD-------PELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
|..+.+.+..++.. ....|....+..++++++++++.+.+|.+.+ ..++++|+|+++++..++.++. ++
T Consensus 87 ~~~~~~~~~~~~n~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~-~~ 162 (486)
T 1js3_A 87 PAMLADMLCGAIGC---IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR-TK 162 (486)
T ss_dssp HHHHHHHHHHHHCC---CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhCc---CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH-HH
Confidence 34455555555543 4456766666789999999999988887642 3578999999999999887763 21
Q ss_pred ---------CC----------EEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 155 ---------GD----------GVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 155 ---------gd----------~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
|| .|+++ .|+++ .+.++.+|+ +.|++++++..+.|..+.+|++
T Consensus 163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~-~~L~~~i~~~~~~g~~p~~vv~ 241 (486)
T 1js3_A 163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRA-SALQEALERDKAAGLIPFFVVA 241 (486)
T ss_dssp HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCH-HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCH-HHHHHHHHHHHhCCCCceEEEE
Confidence 42 36665 56666 335788999 9999999874333323458889
Q ss_pred ECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccc-hHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVS-SKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 199 ~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
++|+||||.+-+ +++|+++|++||+++++|++|+.+.+.. ..... +..+ ..- . ++..|+||++ +
T Consensus 242 ~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~-~~~~~~~~g~--------~~a-d-si~~~~hK~~-~ 306 (486)
T 1js3_A 242 TLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFIC-PEFRHLLNGV--------EFA-D-SFNFNPHKWL-L 306 (486)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGS-TTTGGGGTTG--------GGC-S-EEEECHHHHS-S
T ss_pred eCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHC-HHHHHHhcCc--------ccc-C-eeEEchhhhc-C
Confidence 999999998844 8888999999999999999999765411 11111 1111 111 1 4457899988 6
Q ss_pred CCCceeEEEEecCCChhH-HHHHHh---hh-h--h---------------cccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 278 ECGQRGGYFEMTNIPPKT-VDEIYK---IA-S--I---------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~-~~~l~~---~~-~--~---------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
+| +++||+++ .++.. .+.+.. +. . . +.....+.+.++...+ ..
T Consensus 307 ~p-~~~G~l~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~------------g~ 371 (486)
T 1js3_A 307 VN-FDCSAMWV--KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY------------GV 371 (486)
T ss_dssp CC-SSCEEEEE--SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH------------HH
T ss_pred CC-cceEEEEE--eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH------------hH
Confidence 55 88999997 45543 333311 00 0 0 0011223333333322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
...+++.+++.++++++.+.|++.||+++.. |+.+++.| ++...... ..++. +.|.+.|+.+.++.
T Consensus 372 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~-----------~~~l~-~~L~~~g~~~~~~~ 438 (486)
T 1js3_A 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGSDGL-----------NEALL-ERINSARKIHLVPC 438 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSCHHH-----------HHHHH-HHHHHHTSCBCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEE-EecChHHH-----------HHHHH-HHHHhcCCEEEEEE
Confidence 3355677788889999999999988998864 66666655 22211110 23444 44555676544333
Q ss_pred CCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 415 GFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
.++ +..++|+++. ++++++++++++|+++++++.+++
T Consensus 439 ~~~---~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 439 RLR---GQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAAE 478 (486)
T ss_dssp EET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 332 3458999986 467899999999999998876543
No 202
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.89 E-value=1.3e-21 Score=197.82 Aligned_cols=272 Identities=11% Similarity=0.050 Sum_probs=174.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQ 169 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~ 169 (463)
...+|++.++++++ .+..++++++++++..++.+++ ++||+|+++ .|+++ ..+
T Consensus 83 ~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~ 153 (430)
T 3ri6_A 83 TVEDLEQRLKNLTG--------ALGVLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD 153 (430)
T ss_dssp HHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 35678888888764 2335555566799999999997 899999996 34444 111
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
.. |+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|+...+ .. ..
T Consensus 154 ~~--d~-~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~---~~--~~- 215 (430)
T 3ri6_A 154 VM--DS-LAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL---LE--AK- 215 (430)
T ss_dssp TT--CH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT---CC--GG-
T ss_pred CC--CH-HHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc---CC--hH-
Confidence 11 78 999999887 8999999999999999997 66788889999999999999986433 11 11
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH------------------HHHHHhhh-h-hcccC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT------------------VDEIYKIA-S-IALSP 309 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~------------------~~~l~~~~-~-~~~~~ 309 (463)
. . + ..+++.|+||++ +.+|..+|.+++.+++..+ +..+.... . .....
T Consensus 216 ~----~----g---~div~~S~sK~l-~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~ 283 (430)
T 3ri6_A 216 R----L----G---VDIEVLSSTKFI-SGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSL 283 (430)
T ss_dssp G----G----T---CSEEEEECCCEE-ETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCC
T ss_pred H----c----C---CEEEEECCcccc-cCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCC
Confidence 1 1 1 248999999999 6566555555542223222 23332211 1 12222
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCC----------------ceeE
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFTE----------------GAMY 372 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~----------------g~~~ 372 (463)
+......+.. .++.+....++..+++..+.+.|++.|++. +..|. |++.
T Consensus 284 ~~~~a~l~l~--------------~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ 349 (430)
T 3ri6_A 284 SPHNAYLQSL--------------GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSI 349 (430)
T ss_dssp CHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred CHHHHHHHHh--------------hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceE
Confidence 3222221111 233344455667888899999999888776 33343 6657
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--------------------CCCCcEEEEEecCC
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--------------------KEGIFHLRTTILPA 432 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------------~~~~~~lRis~~~~ 432 (463)
+|+.++ ... +.....+.++..++.+.+|..+.. .-..++||||++.
T Consensus 350 lsf~l~--~~~-----------~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~- 415 (430)
T 3ri6_A 350 LTFELE--SKE-----------ASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI- 415 (430)
T ss_dssp EEEECS--SHH-----------HHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS-
T ss_pred EEEEEC--CHH-----------HHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc-
Confidence 775444 210 222223334455666777776652 0124689999994
Q ss_pred cCcHHHHHHHHHHHH
Q 041151 433 EEDMPAIMESFKKFN 447 (463)
Q Consensus 433 ~e~i~~~~~~l~~~l 447 (463)
|+.+.+++.|++++
T Consensus 416 -E~~~dl~~dl~~al 429 (430)
T 3ri6_A 416 -EEIEDLKEDILQAL 429 (430)
T ss_dssp -SCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhh
Confidence 56777788877765
No 203
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.89 E-value=2.7e-21 Score=196.53 Aligned_cols=293 Identities=12% Similarity=0.085 Sum_probs=192.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH---------hc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV---------IR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---------~~ 152 (463)
++.+++++.+++.. ..|.+..+..++|++++++++ . +++++++|+++++..++.++ +
T Consensus 42 ~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~la~~~g------~--~~~i~~~sGt~a~~~al~~l~~~~~~~~~~- 107 (437)
T 3bb8_A 42 GTKELQLMVEASLD-----GWLTTGRFNDAFEKKLGEYLG------V--PYVLTTTSGSSANLLALTALTSPKLGVRAL- 107 (437)
T ss_dssp CHHHHHHHHHHHHH-----CCCBSCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHTTCGGGGGGSC-
T ss_pred CHHHHHHHHHHHHc-----CCcCCChHHHHHHHHHHHHHC------C--CcEEEeCCHHHHHHHHHHHhhhcccccccC-
Confidence 67888999888765 234455678999999999985 2 25777777789999999998 6
Q ss_pred CCCCEEEEc-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHH
Q 041151 153 GEGDGVVLL-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEAN 213 (463)
Q Consensus 153 ~~gd~Vlvp-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~ 213 (463)
++||+|+++ .|.++ + .+++.+|+ +.|++++++ ++++|+++ +|+|| . +
T Consensus 108 ~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~g~~----~---~ 173 (437)
T 3bb8_A 108 KPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNA-SLIEAAVSD------KTKAIMIAHTLGNL----F---D 173 (437)
T ss_dssp CTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECG-GGHHHHCCT------TEEEEEEECGGGCC----C---C
T ss_pred CCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCH-HHHHHhcCC------CCeEEEEeCCCCCh----h---c
Confidence 899999997 56666 2 23678899 999999876 79999998 46666 3 4
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|.++|+++|+++|+|++|+.....+.. .+ .... .+++.||||+. +++|.|+|+++. ++
T Consensus 174 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~-----------~~~~-d~~~~s~~~~k-~l~~g~gg~~~~---~~ 234 (437)
T 3bb8_A 174 LAEVRRVADKYNLWLIEDCCDALGSTYDGK---MA-----------GTFG-DIGTVSFYPAK-HITMGEGGAVFT---QS 234 (437)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCTTCEETTE---ET-----------TSSS-SEEEEECSTTS-SSCCSSCEEEEE---SC
T ss_pred HHHHHHHHHHcCCEEEEECccccCceECCe---ec-----------cccc-CEEEEECcCCc-CCCCCCeEEEEe---CC
Confidence 788888999999999999999854321111 11 1001 16778998888 789999999995 54
Q ss_pred hH-HHHHHhhhhhcc----------------------------------------cCChHHHHHHHHhcCCCCCCCchHH
Q 041151 294 KT-VDEIYKIASIAL----------------------------------------SPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 294 ~~-~~~l~~~~~~~~----------------------------------------~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
+. .+.+........ ..+.+...++...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----------- 303 (437)
T 3bb8_A 235 AELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQL----------- 303 (437)
T ss_dssp HHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHH-----------
Confidence 44 333333221000 11223333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC--c---e---eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHH
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTE--G---A---MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~--g---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 404 (463)
+.+.+..++.+++.+++.+.|++++|+.+.+.. . + |.+. ++.+.+. +..+ +...|.
T Consensus 304 ---~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------~~~~-l~~~L~ 367 (437)
T 3bb8_A 304 ---ERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPIT--LKEDSGV----------SRID-LVKFLD 367 (437)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEE--ECGGGSS----------CHHH-HHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEE--ECCcCcC----------cHHH-HHHHHH
Confidence 122233444577778899999888776544321 1 2 2222 2322110 1333 456677
Q ss_pred hcCeEeeCCCCCCC--CC-------------------CCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 405 ATGISTVPGSGFGQ--KE-------------------GIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 405 ~~gI~v~pg~~f~~--~~-------------------~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
++||.++++..... .+ ..+.+||++. .+++|++.+++.|+++++
T Consensus 368 ~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 368 EAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp HTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred HCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 88999998765211 00 0125999988 799999999999988754
No 204
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.88 E-value=4.3e-22 Score=199.59 Aligned_cols=200 Identities=12% Similarity=0.139 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------cCCCc---ccC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------KRQQI---GVL 174 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~~~~~---~~d 174 (463)
+..++|+++|++++ .+ ++++++++++++..++. ++ ++||+|+++ ++... ...+. .++
T Consensus 56 ~~~~lr~~la~~~g------~~--~~i~~~sGt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 56 NRENLERAVAALEN------AQ--YGLAFSSGSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHHTT------CS--EEEEESCHHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred hHHHHHHHHHHHhC------CC--cEEEECChHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 45789999999875 22 45555555899999999 87 899999997 22111 01111 112
Q ss_pred --hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC----CeEEEecccccccccCCCCCccch
Q 041151 175 --IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE----NLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 175 --~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~----~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
. +.|++++++ ++++|++++||||||.+++ +++|.++|+++ |+++|+|++|+.+.+ . ..
T Consensus 126 ~~d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~-~-----~~ 189 (393)
T 1n8p_A 126 DLL-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI-S-----NP 189 (393)
T ss_dssp SHH-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-C-----CG
T ss_pred CCh-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc-C-----CH
Confidence 2 456666654 7999999999999999997 77888888899 999999999998765 2 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
.. + +..+++.|+||.+ |.+|+|+ ||++. .++++++.+..... .....+...+.++...++
T Consensus 190 ~~----~-------~~di~~~S~sK~~-g~~G~rigG~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~---- 251 (393)
T 1n8p_A 190 LN----F-------GADIVVHSATKYI-NGHSDVVLGVLAT--NNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK---- 251 (393)
T ss_dssp GG----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT----
T ss_pred HH----c-------CCeEEEEECcccc-cCCCCceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc----
Confidence 11 1 1358999999999 8899999 99984 35788888877654 344455555555544443
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
......+...++++.+.+.|.+.|.
T Consensus 252 ----------~~~~~~~~~~~~~~~l~~~L~~~~~ 276 (393)
T 1n8p_A 252 ----------TLHLRVRQAALSANKIAEFLAADKE 276 (393)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1222344456666677777766543
No 205
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.88 E-value=1.3e-20 Score=192.81 Aligned_cols=310 Identities=13% Similarity=0.025 Sum_probs=200.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCCc---EEEcCCcHHHHHHHHHHHhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPEL---IFLTDGASKGVMQTLNCVIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~~~~l~~ 152 (463)
++.+++++.+.+.+. ...+|+. ..-...|++...+++.+.+|. +.+. .++++++++++..++.+++
T Consensus 67 ~~~V~eA~~~~l~~~--y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~--~~~~~~~~v~~~sGt~An~~al~al~- 141 (490)
T 2a7v_A 67 SRAALEALGSCLNNK--YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYSGSPANLAVYTALL- 141 (490)
T ss_dssp CHHHHHHHTSGGGTC--CCCC------------CTHHHHHHHHHHHHHTTC--CTTTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCC--CccCCCcccccCccHHHHHHHHHHHHHHHHHcCC--CcccCceEEeCCchHHHHHHHHHHHc-
Confidence 899999998877652 1123332 122246664444555555453 3432 3455577999999999998
Q ss_pred CCCCEEEEc---cCc-----------e---------e-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCC
Q 041151 153 GEGDGVVLL---FHT-----------T---------W-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNP 204 (463)
Q Consensus 153 ~~gd~Vlvp---~g~-----------~---------~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP 204 (463)
+|||+|+++ +++ . + ....+.+|+ +.|++.+.+. ++|+|+++.++||
T Consensus 142 ~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~-d~le~~l~~~-----~~klIi~~~s~~~ 215 (490)
T 2a7v_A 142 QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDY-NQLALTARLF-----RPRLIIAGTSAYA 215 (490)
T ss_dssp CSCEECCC-------------------------------CCBCTTTCSBCH-HHHHHHHHHH-----CCSEEEECCSSCC
T ss_pred CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCH-HHHHHHHhhc-----CCcEEEEcCCCCC
Confidence 999999986 221 1 1 113568999 9999999764 7899988899998
Q ss_pred CccCCCHHHHHHHHHHhhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 205 TGQCLSEANLREILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 205 tG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
+ ..+ +++|.++|+++|+++++|++|.. +.+ .+..+.++. . . .+++.|+||++ .|.|.
T Consensus 216 ~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~-~g~~~~~~~----~-----a----Div~~S~hK~l---~Gp~G 273 (490)
T 2a7v_A 216 R--LID---YARMREVCDEVKAHLLADMAHISGLVA-AKVIPSPFK----H-----A----DIVTTTTHKTL---RGARS 273 (490)
T ss_dssp S--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHH-TTSSCCGGG----T-----C----SEEEEESSGGG---CSCSC
T ss_pred C--ccc---HHHHHHHHHHcCCEEEEcccccccccc-CCcCCCCCC----C-----C----CEEEECCcccC---ccccc
Confidence 5 334 78889999999999999999753 333 222222221 1 1 27889999998 47788
Q ss_pred EEEEecCCCh---------------hHHHHHHhhhh-hc-ccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHH
Q 041151 284 GYFEMTNIPP---------------KTVDEIYKIAS-IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESL 345 (463)
Q Consensus 284 G~~~~~~~~~---------------~~~~~l~~~~~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 345 (463)
|++++ ++ ++.+++.+... .. .+++.....++..++. ... .+.++.++++
T Consensus 274 G~i~~---~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~----------~~~~~~~~~~~~~~ 340 (490)
T 2a7v_A 274 GLIFY---RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK----------QACTPMFREYSLQV 340 (490)
T ss_dssp EEEEE---ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHH----------HHHSHHHHHHHHHH
T ss_pred hheee---ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH----------HHhhhhHHHHHHHH
Confidence 99996 33 35666665543 22 2333333333333331 111 2335567788
Q ss_pred HHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK--EGI 422 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~ 422 (463)
.++++++.+.|.+. |+.+.. +..++++|+++.... . +...+...|++.||.+..+..++.. -..
T Consensus 341 ~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g-~-----------~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~ 407 (490)
T 2a7v_A 341 LKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKG-L-----------DGARAERVLELVSITANKNTCPGDRSAITP 407 (490)
T ss_dssp HHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTT-C-----------CHHHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred HHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCC-C-----------CHHHHHHHHHhCCeEEecCccCCCCCCCCC
Confidence 99999999999997 888865 345677887765221 1 2344667888999999865544421 123
Q ss_pred cEEEEEec------CCcCcHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL------PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 423 ~~lRis~~------~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+||+.. .+++|++++++.|.+++...
T Consensus 408 ~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 57999774 47799999999999888643
No 206
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.5e-20 Score=193.28 Aligned_cols=321 Identities=11% Similarity=0.023 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC--------CcEEEcCCcHHHHHHHHHHHhc-
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP--------ELIFLTDGASKGVMQTLNCVIR- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--------~~i~~t~G~~~al~~~~~~l~~- 152 (463)
|..+.+.+..++.. ....|....+..++++++++|+.+.+|.+... ...++|+|+++++..++.+...
T Consensus 92 ~~~~~~~~~~~~n~---~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~ 168 (481)
T 4e1o_A 92 PSLLGDMLADAINC---LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKN 168 (481)
T ss_dssp HHHHHHHHHHHHCC---CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc---ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHH
Confidence 33333444445543 45677777788999999999999998876432 3678999999999888876631
Q ss_pred -----------------CCCCEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 153 -----------------GEGDGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 153 -----------------~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
.+++.|+++ .|.++ .+.++.+|+ +.|++++++....+..+.+|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~-~~Le~~i~~~~~~g~~~~~vv~ 247 (481)
T 4e1o_A 169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRG-EALQKAIEEDKQRGLVPVFVCA 247 (481)
T ss_dssp HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCH-HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 156788887 45555 345788999 9999999875444444788888
Q ss_pred ECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 199 ~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
+.++|+||.+-+ +++|+++|++||+++++|.+|....+.. .. ......++ .. -..+..+.+|++ +.
T Consensus 248 ~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~-~~---~~~~~~gi----~~--aDsi~~~~hK~l-~~ 313 (481)
T 4e1o_A 248 TLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLC-PE---FRGFLKGI----EY--ADSFTFNPSKWM-MV 313 (481)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGS-GG---GGGGGTTG----GG--CSEEEECHHHHS-SC
T ss_pred ecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhC-hh---hHHHhcCc----cc--CCEEEEChHHhc-CC
Confidence 899999998855 8888999999999999999998754311 11 11111111 11 125668999998 44
Q ss_pred CCceeEEEEecCCChhHHHHHHhhhhhc----------------c--c--CChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 279 CGQRGGYFEMTNIPPKTVDEIYKIASIA----------------L--S--PNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 279 ~G~R~G~~~~~~~~~~~~~~l~~~~~~~----------------~--~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
| .-+|++++ .++..+.......... . + ...+.+.++...+ .....
T Consensus 314 p-~g~g~l~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~------------g~~g~ 378 (481)
T 4e1o_A 314 H-FDCTGFWV--KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF------------GVKNL 378 (481)
T ss_dssp C-SSCEEEEE--SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH------------HHHHH
T ss_pred C-CceEEEEE--eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh------------HHHHH
Confidence 4 33677776 5665433211111000 0 0 0122333333322 12335
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC-eEeeCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG-ISTVPGSGFG 417 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-I~v~pg~~f~ 417 (463)
+++.++..++++++.+.|++.||+++..+....++++++.-... ...++... |.+.| +.+.|+..
T Consensus 379 ~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~-----------~~~~l~~~-L~~~g~~~~~~~~~-- 444 (481)
T 4e1o_A 379 QAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS-----------LTENVLKE-IAKAGRLFLIPATI-- 444 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHH-----------HHHHHHHH-HHHHCSSBCEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchH-----------HHHHHHHH-HHhCCeEEEEeeEE--
Confidence 56778889999999999999999998766555556655532111 13344444 44556 55555332
Q ss_pred CCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 418 ~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..++|+++. ++++++++++++|+++++++.
T Consensus 445 --~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 445 --QDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp --TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 23458999977 477999999999999988764
No 207
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.87 E-value=5e-21 Score=190.79 Aligned_cols=299 Identities=12% Similarity=0.067 Sum_probs=193.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH-HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV-AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i-a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl 159 (463)
++.+++++.+.+.+. ....|++ ...+|++++ |++++ ..+++++++|+++++..++.++ + +|||+|+
T Consensus 15 ~~~i~~a~~~~~~~~--~~~~~~~--~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~~-~~Gd~Vi 82 (377)
T 3ju7_A 15 VIEYLDELKEIDASH--IYTNYGP--INQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKKR-KKGKYAL 82 (377)
T ss_dssp GGGGHHHHHHHHHHT--CCSSSCH--HHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHSC-TTCCEEE
T ss_pred cHHHHHHHHHHHHcC--CcccCCH--HHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcCC-CCcCEEE
Confidence 778888988888761 2112333 367899999 88864 1567888999999999999998 7 8999999
Q ss_pred Ec-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCc--eeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 160 LL-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 160 vp-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~--~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
++ .|+++ ..+.+.+|+ +.+++++... + +|+|+ |+||||...+ +++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~i~~ 150 (377)
T 3ju7_A 83 MPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDK-TVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEEYEE 150 (377)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCH-HHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHHHHH
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCH-HHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHHHHH
Confidence 97 66666 225688999 9999998432 6 89887 7889999887 667778
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
+|+ +|++||+|++|+......+.+ +.. .+ .+ +.+.|| +|.+ +. | +.|++++ .++++++
T Consensus 151 la~-~~~~vi~D~a~a~g~~~~~~~---~g~---~~----~d----~~~~S~~~~K~l-~~-g-~gG~~~~--~~~~l~~ 210 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMNGGMH---YGQ---DF----SG----MIIYSFHATKPF-GI-G-EGGLIYS--KNEEDIQ 210 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEETTEE---TTT---TC----SS----EEEEECBTTSSS-CC-B-SCEEEEE--SCHHHHH
T ss_pred HHh-cCCEEEEECCCccCCeECCEe---ccC---CC----Cc----EEEEECCCCCcC-CC-C-CcEEEEE--CCHHHHH
Confidence 888 999999999998643211111 100 00 11 445554 6988 53 5 6888886 6788888
Q ss_pred HHHhhhhh-------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-
Q 041151 298 EIYKIASI-------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV- 363 (463)
Q Consensus 298 ~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~- 363 (463)
+++.+... ....+.+...++... ++.++...++.+++++.+.+.|++++++.
T Consensus 211 ~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--------------l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~ 276 (377)
T 3ju7_A 211 RIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIAT--------------MKKWDDKLKERTRISEWYKQLLQSNGLMKK 276 (377)
T ss_dssp HHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHH--------------HHTHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 88776541 122333433333333 23344455666777777888888776542
Q ss_pred -cccCCc--eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC--CCCC-------C---------CC
Q 041151 364 -CNFTEG--AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG--FGQK-------E---------GI 422 (463)
Q Consensus 364 -~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~--f~~~-------~---------~~ 422 (463)
+.+..+ .++.++.+..+.. .+.+.+...|.++||.++.+.. +... . ..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 345 (377)
T 3ju7_A 277 GWQLQKTEAVIQQFMPILCPEE-----------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAK 345 (377)
T ss_dssp TCBCCCCSCBCCSSEEEECCTT-----------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHH
T ss_pred cccCCCCCcceEEEEEEEeCCh-----------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHh
Confidence 222221 2222222333321 1234456778889999987651 1110 0 13
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
..+||.+. .+++|++.+++.|++++.+
T Consensus 346 ~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 346 RIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 47999998 7889999999999877765
No 208
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.87 E-value=1.3e-20 Score=194.84 Aligned_cols=322 Identities=12% Similarity=0.056 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH----hc-----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV----IR----- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----~~----- 152 (463)
++.+++++.....+. ....|.......++++++.+++.+..|.+ +.+++++|+|+++++..++.+. +.
T Consensus 113 ~~~v~~~~~~~~~n~--~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~ 189 (497)
T 2qma_A 113 MPAVAAEAMIAALNQ--SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGH 189 (497)
T ss_dssp HHHHHHHHHHHHHCC--CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhcc--cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhccc
Confidence 778888876554442 34456554456788888888888887764 3379999999999999988873 20
Q ss_pred ---CC------CC-EEEEc-------------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCC
Q 041151 153 ---GE------GD-GVVLL-------------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPG 202 (463)
Q Consensus 153 ---~~------gd-~Vlvp-------------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~ 202 (463)
.+ |+ .|+++ .|. ++ .+.++.+|+ +.|++++++....+.++.+|++++++
T Consensus 190 ~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~-~~L~~~i~~~~~~~~~~~~vv~~~~~ 268 (497)
T 2qma_A 190 SIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDI-TKLDEVIAQAKAEGLIPFAIVGTAGT 268 (497)
T ss_dssp CHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCG-GGHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred chhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCH-HHHHHHHHHHHHCCCcceEEEEcCCC
Confidence 12 46 67776 332 34 345678999 99999998743332224488888999
Q ss_pred CCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce
Q 041151 203 NPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282 (463)
Q Consensus 203 NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 282 (463)
||||.+.+ +++|+++|++||+++++|++|+.+.+..+ .. ....++ .. ..+++.|+||++ +.| .+
T Consensus 269 ~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~---~~~~gi----~~--~D~i~~s~hK~l-~~p-~~ 332 (497)
T 2qma_A 269 TDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS--HK---SRLKGV----ER--AHSISVDFHKLF-YQT-IS 332 (497)
T ss_dssp TTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST--TG---GGGTTG----GG--CSEEEEETTTTT-CCC-SS
T ss_pred CCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc--ch---HhhcCc----cc--CCEEEEcchhcc-CCC-cc
Confidence 99999866 77888899999999999999998765211 11 111111 11 126778999998 545 68
Q ss_pred eEEEEecCCChhHHHHHHhhhhh-ccc----C-------------ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 283 GGYFEMTNIPPKTVDEIYKIASI-ALS----P-------------NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 283 ~G~~~~~~~~~~~~~~l~~~~~~-~~~----~-------------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
+|++++ .++..++.+...... ... + ..+.+.++...+. ....+++.++
T Consensus 333 ~G~l~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg------------~~g~~~~~~~ 398 (497)
T 2qma_A 333 CGALLV--NDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG------------PKALGDMYDH 398 (497)
T ss_dssp CEEEEE--SCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC------------HHHHHHHHHH
T ss_pred eEEEEE--eCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC------------HHHHHHHHHH
Confidence 999997 455544433211110 000 0 0112222222221 1234456777
Q ss_pred HHHHHHHHHHHhhcCCCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCc
Q 041151 345 LRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIF 423 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~ 423 (463)
..++++++.+.|++.||+++. +|.++++.| ++.-.....+ .-...+...+.+.|+.+.++..+. +..
T Consensus 399 ~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~--------~l~~~l~~~l~~~G~~~~~~~~~~---g~~ 466 (497)
T 2qma_A 399 LLAQTLEVADMIRTNDQFELLAEPSLSTVLF-RATHETADLD--------ELNKALRLEALTRGIAVLGETIVD---GKT 466 (497)
T ss_dssp HHHHHHHHHHHHHTCTTEEECSCCSSSEEEE-EECCSSSCHH--------HHHHHHHHHHHHHTSCBCEEEEET---TEE
T ss_pred HHHHHHHHHHHHhhCCCeEEEcCCCceEEEE-EEcCCccCHH--------HHHHHHHHHHHhCCCEEEEeeEEC---CEE
Confidence 888999999999998898875 566664443 3321110000 001223345667899887654432 345
Q ss_pred EEEEEe-c--CCcCcHHHHHHHHHHHHHH
Q 041151 424 HLRTTI-L--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 424 ~lRis~-~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++|+++ . ++++++++++++|++++++
T Consensus 467 ~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 467 ALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 899998 3 7899999999999988765
No 209
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.87 E-value=5.5e-21 Score=192.56 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
..++++.+|++++ .+++++++|+++++..++.+++ ++||+|+++ .|+++ ..+
T Consensus 84 ~~~le~~lA~l~g--------~~~~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~- 153 (415)
T 2fq6_A 84 HFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD- 153 (415)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC-
T ss_pred HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC-
Confidence 4578888888874 2456777888999999999997 899999997 23333 111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccch
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
..|+ ++|++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|+...+ .. ++
T Consensus 154 -~~d~-~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~--~~---p~ 217 (415)
T 2fq6_A 154 -PLIG-ADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL--FK---AL 217 (415)
T ss_dssp -TTCG-GGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS--SC---GG
T ss_pred -CCCH-HHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc--CC---cc
Confidence 1277 899998876 7999999999999999997 6788888999 9999999999986532 11 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
. + . ..+++.|+||++ +.+|.+ +||++. ++++++.+..... .....+......+...
T Consensus 218 -~----~----g---~Div~~S~sK~l-g~~g~~~~G~l~~---~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~------ 275 (415)
T 2fq6_A 218 -D----F----G---IDVSIQAATKYL-VGHSDAMIGTAVC---NARCWEQLRENAYLMGQMVDADTAYITSRG------ 275 (415)
T ss_dssp -G----G----T---CSEEEEETTTTT-TCSSSCCCEEEEE---CTTTHHHHHHHHHHTTCCCCHHHHHHHHHH------
T ss_pred -c----c----C---CeEEEEeCcccc-CCCCCceEEEEEe---CHHHHHHHHHHHHhcCCCCCHHHHHHHHhh------
Confidence 1 1 1 248999999999 777765 689884 6778888876654 2333333333222222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
++.+....++..++...+.+.|++.|++
T Consensus 276 --------l~~l~~r~~~~~~n~~~l~~~L~~~~~v 303 (415)
T 2fq6_A 276 --------LRTLGVRLRQHHESSLKVAEWLAEHPQV 303 (415)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 2233344555677778888888776543
No 210
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.86 E-value=3.1e-20 Score=190.59 Aligned_cols=308 Identities=11% Similarity=-0.023 Sum_probs=198.3
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-------CcEEEcCCcHHHHHHHHHHHhc------------------C
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-------ELIFLTDGASKGVMQTLNCVIR------------------G 153 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~l~~------------------~ 153 (463)
+...|....+..++++++.+|+.+.+|.+... ...++|+|+++++..++.+... .
T Consensus 101 ~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~ 180 (475)
T 3k40_A 101 IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180 (475)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 45567766678899999999999998876322 3688999999998888777520 1
Q ss_pred CCCEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 154 EGDGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 154 ~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+++.|+++ .|.++ .+.++ +|+ +.|++++++....+..+.+|+++.++|+||.+-+ +++
T Consensus 181 ~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~-~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~ 255 (475)
T 3k40_A 181 GKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRG-AALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDE 255 (475)
T ss_dssp HHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCH-HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHH
T ss_pred CCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCH-HHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHH
Confidence 34678887 55555 34456 999 9999999885444444788888999999999855 888
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|+++|++||+++++|.+|+...+..+ . ......++ .. -..+..+++|++++. ..+|++++ .+++.+
T Consensus 256 I~~la~~~~~~lhvD~A~~~~~~~~~-~---~~~~~~gi----~~--~Ds~~~~~hK~l~~p--~g~g~l~~--~~~~~l 321 (475)
T 3k40_A 256 CGPVGNKHNLWIHVDAAYAGSAFICP-E---YRHLMKGI----ES--ADSFNFNPHKWMLVN--FDCSAMWL--KDPSWV 321 (475)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSG-G---GGGGGTTG----GG--CSEEEECHHHHSSCC--SSCEEEEE--SSGGGC
T ss_pred HHHHHHHhCCeEEEeHHhHHHHHhCH-h---hHHHhcCc----cc--CCEEEECchhccCCC--CceEEEEE--eCHHHH
Confidence 88999999999999999987533111 1 11111111 11 125779999988433 34788877 455443
Q ss_pred -HHHHhhhh---------------hcccCC----hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 297 -DEIYKIAS---------------IALSPN----VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 297 -~~l~~~~~---------------~~~~~~----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
+.+..... .....+ .+.+.++...+ .....+++.++..++++++.+.|
T Consensus 322 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~------------g~~g~~~~~~~~~~~a~~l~~~L 389 (475)
T 3k40_A 322 VNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY------------GVENLQAHIRRHCNFAKQFGDLC 389 (475)
T ss_dssp ---------------------------CCCGGGTHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221100 000011 11222222221 12235667788899999999999
Q ss_pred hcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCc
Q 041151 357 NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAE 433 (463)
Q Consensus 357 ~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~ 433 (463)
++.||+++..+....++++++.-... ...++...+.++.++.+.|+..+ +..++|+++. +++
T Consensus 390 ~~~~g~~l~~~~~~~iv~f~~~~~~~-----------~~~~l~~~L~~~g~~~~~~~~~~----g~~~lR~~~~~~~tt~ 454 (475)
T 3k40_A 390 VADSRFELAAEINMGLVCFRLKGSNE-----------RNEALLKRINGRGHIHLVPAKIK----DVYFLRMAICSRFTQS 454 (475)
T ss_dssp HHSTTEEESSCCBTTEEEEEESSCHH-----------HHHHHHHHHHHHTSCBCEEEEET----TEEEEEEECCCTTCCH
T ss_pred hcCCCEEEecCCceEEEEEEeCCchH-----------HHHHHHHHHHhCCcEEEEeeEEC----CEEEEEEEeCCCCCCH
Confidence 99999998765554455544432111 13445555444444455554433 3458999987 478
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 041151 434 EDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 434 e~i~~~~~~l~~~l~~~~~ 452 (463)
++++.++++|+++++++.+
T Consensus 455 ~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 455 EDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887653
No 211
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.86 E-value=1.3e-20 Score=192.57 Aligned_cols=287 Identities=10% Similarity=0.041 Sum_probs=183.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcH-HHHHHHHHHHhcC--CCCEEEEc-------------cCcee---c--
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGAS-KGVMQTLNCVIRG--EGDGVVLL-------------FHTTW---K-- 167 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~~--~gd~Vlvp-------------~g~~~---~-- 167 (463)
..++.+++.+++.+..|.+ ++ +++|+|++ .++..++.++. . +|+.|+++ .|+++ +
T Consensus 131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~-~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHH-HHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHH-HhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence 3456666667776666653 44 99999999 46655666653 4 67878876 56665 2
Q ss_pred --CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCc
Q 041151 168 --RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPF 245 (463)
Q Consensus 168 --~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~ 245 (463)
...+.+|+ ++|++++++...+ .++.+|++++||||||.+.+ +++|.++|+++|+++++|++|+.+.++ .
T Consensus 207 ~~~~~~~~d~-~~l~~~i~~~~~~-~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g----~ 277 (456)
T 2z67_A 207 LDGDRVYVPV-EDIENAIKKEIEL-GNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY----Y 277 (456)
T ss_dssp EETTEEECCH-HHHHHHHHHHHHT-TCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH----H
T ss_pred ccCCCCCcCH-HHHHHHHHHHhhC-CCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH----h
Confidence 45678999 9999999321111 16788888999999999977 777888888999999999999865431 1
Q ss_pred cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCC
Q 041151 246 VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPL 324 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~ 324 (463)
.+. . ...+ ... -.+++.|++|++ + +++++||+++ .++++++.+..... .....+.+.+.++...+
T Consensus 278 ~~~-~-~~~~----~~~-~D~~~~s~hK~~-~-~p~g~G~l~~--~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l--- 343 (456)
T 2z67_A 278 LEK-L-KKAF----KYR-VDAVVSSSDKNL-L-TPIGGGLVYS--TDAEFIKEISLSYPGRASATPVVNTLVSLLSM--- 343 (456)
T ss_dssp HHH-H-HHHH----TSC-CSEEEEEHHHHH-C-CCSSCEEEEE--SCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH---
T ss_pred hHH-H-HHhh----CCC-CCEEEEcCCCCc-C-CCCCeEEEEE--cCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHH---
Confidence 011 0 0111 101 125779999976 3 5688999996 46778777744332 11111223333333222
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHH
Q 041151 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLR 401 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (463)
.....+++.+++.++++++.+.|++++ |+.+..|+ ++ +++++..+. ...++. .
T Consensus 344 ---------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~------------~~~~l~-~ 399 (456)
T 2z67_A 344 ---------GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNS------------DPVEIA-A 399 (456)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSS------------CHHHHH-H
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-Ce-EEEEEeccc------------HHHHHH-H
Confidence 123355678888999999999998875 77777777 44 343442121 013443 4
Q ss_pred HHHhcCe---Eee------CCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 402 LLEATGI---STV------PGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 402 ll~~~gI---~v~------pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
.|.++|| .+. +|..|... ..+++|+|++ ++++++++++++|++++
T Consensus 400 ~L~~~gi~~~rv~~~~g~f~G~~~~~~-~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 400 KLYNLRVTGPRGIKKTDHFGNCYLGTY-THDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHTTEESCEEECTTCHHHHTCSSCC-SCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred HHHHcCCCcceEEeecCcccccccccc-CcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 4556675 343 23444332 2358999999 78999999999998754
No 212
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.86 E-value=6.2e-21 Score=195.71 Aligned_cols=309 Identities=12% Similarity=0.115 Sum_probs=195.9
Q ss_pred cHHHHHHHHHHhhhcC-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-------cC
Q 041151 82 PADAIARAKHYLSLTS-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-------RG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~ 153 (463)
++.+++++.+++.... .....|+. ....++++++++.+.+..+ ...+.|++++|+++|+..+++.+. +.
T Consensus 81 ~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~ 157 (472)
T 1ohv_A 81 HPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKERG 157 (472)
T ss_dssp CHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCchhHHHHHHHHHHHHhhhhccC
Confidence 8889999987654210 01113433 3357899999997765433 356799999999999999998773 11
Q ss_pred -----------------CC---CEEEEc----cCcee--------------------------cCCCc------------
Q 041151 154 -----------------EG---DGVVLL----FHTTW--------------------------KRQQI------------ 171 (463)
Q Consensus 154 -----------------~g---d~Vlvp----~g~~~--------------------------~~~~~------------ 171 (463)
|| +.|++. +|... +...+
T Consensus 158 ~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 237 (472)
T 1ohv_A 158 QSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE 237 (472)
T ss_dssp TCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHH
T ss_pred cccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhH
Confidence 45 788886 22111 00000
Q ss_pred -ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 172 -GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 172 -~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..|+ +.|++.+++....+.++++|+++..+|+||. ..+.+.+++|.++|++||+++|+||+|..+.+. + ....+.
T Consensus 238 ~~~d~-~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g-~~~~~~ 314 (472)
T 1ohv_A 238 EARCL-EEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST-G-KFWAHE 314 (472)
T ss_dssp HHHHH-HHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-S-SSSGGG
T ss_pred HHHHH-HHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCC-C-Cchhcc
Confidence 1156 8888888764221225788877766888996 568999999999999999999999999865442 1 111221
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcc-cCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKG-YWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPG 327 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~-~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~ 327 (463)
.+++ .. .+-+.||||. + +| ||++ ++++. .+..... .+++.+++.|.++.++|+
T Consensus 315 ----~~gv--~~---~~Di~t~sK~~l---~G---G~~~----~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~----- 369 (472)
T 1ohv_A 315 ----HWGL--DD---PADVMTFSKKMM---TG---GFFH----KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVIN----- 369 (472)
T ss_dssp ----GGCC--SS---CCSEEEECGGGS---SE---EEEE----CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHH-----
T ss_pred ----ccCC--CC---CCCEEEEccccc---cC---CccC----chhhc-ccccccccCccCccHHHHHHHHHHHH-----
Confidence 1110 10 0224589998 5 24 7775 44442 1222222 355678889988887763
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 328 DISYEQFVRESKGILESLRRRARMMTDGFNSC----RN-VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
.... +.+.++++++++++.+.|+++ |+ +....+.|.++ ++++ +... +...++..
T Consensus 370 ------~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~-~~~~--~~~~----------~~~~~~~~- 428 (472)
T 1ohv_A 370 ------IIKR-EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFC-SFDT--PDES----------IRNKLISI- 428 (472)
T ss_dssp ------HHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEE-EEEC--SSHH----------HHHHHHHH-
T ss_pred ------HHHh-CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEE-EEEe--CChh----------HHHHHHHH-
Confidence 2221 245677788888888877654 43 43345555544 4333 3210 13445555
Q ss_pred HHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 403 LEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 403 l~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|.++||.+.|+. .+++|++++ .+++++++++++|++++++
T Consensus 429 l~~~Gv~~~~~g-------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 429 ARNKGVMLGGCG-------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCeEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 446899999842 348999777 8899999999999998865
No 213
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.85 E-value=1.7e-20 Score=190.79 Aligned_cols=274 Identities=14% Similarity=0.085 Sum_probs=170.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH-HhcCCCCEEEEc-----------------cCcee-
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC-VIRGEGDGVVLL-----------------FHTTW- 166 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~-l~~~~gd~Vlvp-----------------~g~~~- 166 (463)
.+|..++.+++.+.+.+..| .++++|++++|++.++..+..+ .. ++||+|+++ .|+++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g--~~~~~i~~~~g~taa~ea~~~a~~~-~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAG--LEIANASMYDGATALAEGVLLALRE-TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHT--SSEECSCBSSHHHHHHHHHHHHHHH-HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHHHHHHhC--CCccceEEeCcHHHHHHHHHHHHhc-CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 34555555555555555555 4567899999999443333333 23 689999997 36665
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc-ccccccCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV-YQQNIYQDER 243 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea-y~~~~~~~~~ 243 (463)
+...+.+|+ +. +++ ++++|++++| ||||.+.+ +++|+++|+++|+++++|.. .+...+
T Consensus 180 ~v~~~~~~~d~-~~----i~~------~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~---- 240 (438)
T 1wyu_A 180 TLPLEGGRTPL-PE----VGE------EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVL---- 240 (438)
T ss_dssp EECCBTTBCCC-CC----CCT------TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTB----
T ss_pred EEcCcCCccCH-HH----hCC------CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCc----
Confidence 324456777 66 443 7999999999 99999986 77888889999999996522 211111
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCC----CCCceeEEEEecCCChhHHHHHHhh-----------------
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG----ECGQRGGYFEMTNIPPKTVDEIYKI----------------- 302 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g----~~G~R~G~~~~~~~~~~~~~~l~~~----------------- 302 (463)
. .... + +.+ +++.| ||.| | +.|.++||+++ ++++++.+...
T Consensus 241 ~--~~~~----~----g~D---~~~~s-~kk~-~~~~~~~Gp~~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 302 (438)
T 1wyu_A 241 K--PPGA----Y----GAD---IAVGD-GQSL-GLPMGFGGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGRRGFILT 302 (438)
T ss_dssp C--CHHH----H----TCS---EEEEE-CTTT-TCCCGGGCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSCEEEEEC
T ss_pred C--CCcc----C----CCC---EEEEC-Cccc-CCCccCCCCCeeEEEE---cHHHHHhCCCceeccccccCCCcceeee
Confidence 1 1112 1 221 55566 6655 3 34668999995 67666554211
Q ss_pred --------h--hhcccC---ChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 041151 303 --------A--SIALSP---NVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFTE 368 (463)
Q Consensus 303 --------~--~~~~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~ 368 (463)
+ ..+.+. +.....++..++. .+. ...+++++++.++++++.+.|+++||+++..+.
T Consensus 303 l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 372 (438)
T 1wyu_A 303 LQAREQYIRRAKAKSNITTNAQLTALMGAMYLA----------ALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK 372 (438)
T ss_dssp CGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS
T ss_pred ccccccccchhcccCCccchHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC
Confidence 0 011111 1111111111121 111 125567888899999999999998899887654
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEe--eCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIST--VPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v--~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
.+|.++.++.+. +..+++.. |.++||.+ .++..|+ .+++|||+. ++.+++++++++|+
T Consensus 373 -~~~~~~~~~~~~------------~~~~~~~~-L~~~gi~v~~~~~~~~~----~~~lRis~~~~~t~edi~~~~~~l~ 434 (438)
T 1wyu_A 373 -PFFNEFALALPK------------DPEAVRRA-LAERGFHGATPVPREYG----ENLALFAATELHEEEDLLALREALK 434 (438)
T ss_dssp -SBCSEEEEECSS------------CHHHHHHH-HHHTTCCCCEECCTTSC----SSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred -CeEEEEEEeCCC------------CHHHHHHH-HHHCCceeccccccccC----CCeEEEEecccCCHHHHHHHHHHHH
Confidence 344433344321 24455544 55679999 7777664 348999999 78899999999998
Q ss_pred HHH
Q 041151 445 KFN 447 (463)
Q Consensus 445 ~~l 447 (463)
+++
T Consensus 435 ~~l 437 (438)
T 1wyu_A 435 EVL 437 (438)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
No 214
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.85 E-value=7.2e-21 Score=193.85 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=168.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---
Q 041151 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW--- 166 (463)
Q Consensus 103 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~--- 166 (463)
|.+.....++++.+++ ++ .+ +++++|+|+++++..++.+++ ++||+|+++ .|.++
T Consensus 53 ~~~~~~~~~~~~~la~-~g------~~-~~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 123 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-HS------DY-DGYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLHALDISQQEGHFI 123 (446)
T ss_dssp TSCSSHHHHHHHHHCS-CT------TE-EEEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred cCcchHHHHHHHHHHh-cC------CC-ceEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence 3344455677777777 64 33 689999999999999999997 899999997 45555
Q ss_pred -c--CCC----cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc-cc
Q 041151 167 -K--RQQ----IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-NI 238 (463)
Q Consensus 167 -~--~~~----~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~~ 238 (463)
. ... +.+|+ +.| +.+ ++++|++++ .|+||.+++ +++|+++|+++|++||+||+|+. +.
T Consensus 124 ~~~~~~~~~~~~~~d~-~~l---~~~------~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~ 189 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNL-SRL---NND------GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFG 189 (446)
T ss_dssp EEEECTTTSSEEEEEC-----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred eCeeccccCcCCCCCH-HHH---cCC------CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhc
Confidence 2 333 57888 887 333 789999999 455999998 67888899999999999999986 33
Q ss_pred cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH--HHHhhhh-h-cccCChHHH
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD--EIYKIAS-I-ALSPNVPAQ 314 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~--~l~~~~~-~-~~~~~~~~q 314 (463)
|. +. +.+.... +. .+++.|+||++++++| +||+++ ++++++ .+..... . ..+++....
T Consensus 190 f~-~~-~~~~~~~--------g~---Di~~~S~~K~l~~~~g--~g~l~~---~~~~i~~~~~~~~~~~~~~~s~~~~~~ 251 (446)
T 2x3l_A 190 LQ-GF-PDSTLNY--------QA---DYVVQSFHKTLPALTM--GSVLYI---HKNAPYRENIIEYLSYFQTSSPSYLIM 251 (446)
T ss_dssp ST-TS-CCCGGGG--------TC---SEEEECHHHHSSSCTT--CEEEEE---ETTCTTHHHHHHHHHHHSCSSCCHHHH
T ss_pred cC-CC-CCChHHc--------CC---CEEEECCccccccccc--cEEEEE---cCCcCCHHHHHHHHHHHcCCCchHHHH
Confidence 42 22 2233221 22 2899999997744444 899996 444433 3333222 1 233333333
Q ss_pred HHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 315 IFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
.++..++ +++.. .+++.++..++.+.+.+. |+.+..+..+.++|+.++ +.
T Consensus 252 aal~~a~-----------~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~---~~--------- 303 (446)
T 2x3l_A 252 ASLESAA-----------QFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYE---GF--------- 303 (446)
T ss_dssp HHHHHHH-----------HHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECT---TS---------
T ss_pred HHHHHHH-----------HHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeC---Cc---------
Confidence 3332222 11221 111344444444444443 667766655556775553 11
Q ss_pred CChHHHHHHHHHhcCeEee-CCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTV-PGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~-pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..++ .+.|.++||.+. +|. +++|++++ .+++++ +++++|+++++++
T Consensus 304 -~~~~l-~~~L~~~GI~v~~~g~--------~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 304 -TGHDI-QNWFMNAHIYLELADD--------YQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp -CHHHH-HHHHHHTTEEESEECS--------SCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred -CHHHH-HHHHHHCCCEEEecCC--------CEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 23444 445666699997 432 37999999 588999 9999999887544
No 215
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.85 E-value=7.6e-20 Score=183.47 Aligned_cols=270 Identities=9% Similarity=0.002 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c---------------Ccee-cCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F---------------HTTW-KRQ 169 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~---------------g~~~-~~~ 169 (463)
..+|++.++++++ .+.+++++++++++.. +..++ ++||+|+++ + |.++ ..+
T Consensus 69 ~~~l~~~la~l~g--------~~~~~~~~sG~~Ai~~-~~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 69 RFAYERCVAALEG--------GTRAFAFASGMAATST-VMELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHH-HHTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHhC--------CCCEEEecCHHHHHHH-HHHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 3567777777653 2356666666999998 45676 899999997 2 3333 111
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..|+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+. . ++
T Consensus 139 --~~d~-~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~--~---~~- 200 (400)
T 3nmy_A 139 --LTDP-AAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQ--R---PL- 200 (400)
T ss_dssp --TTSH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC--C---GG-
T ss_pred --CCCH-HHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC--C---hh-
Confidence 1277 999999876 8999999999999999997 888888999999999999999865431 1 11
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE--EEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY--FEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~--~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
. + +..+++.|+||++ +.+|.++|. +++ +++++++.+..... .+...++.....+...++
T Consensus 201 ~----~-------g~div~~S~sK~l-~g~g~~~gG~~vv~--~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~---- 262 (400)
T 3nmy_A 201 S----L-------GADLVVHSATKYL-NGHSDMVGGIAVVG--DNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK---- 262 (400)
T ss_dssp G----G-------TCSEEEEETTTTT-TCSSSCCCEEEEEC--SCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT----
T ss_pred h----c-------CCcEEEecCcccc-CCCCCcceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh----
Confidence 0 1 1348999999999 667777765 443 57888888877765 455556666555555543
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cC----------------CceeEEeeeccCChhhHHHHhh
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FT----------------EGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~----------------~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
.+....++..++.+.+.+.|++.|.+..+ .| ..|.++++.++ .+.
T Consensus 263 ----------~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~--~~~------ 324 (400)
T 3nmy_A 263 ----------TLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK--GGF------ 324 (400)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET--THH------
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC--CcH------
Confidence 22234556678888888999887765432 22 12455564443 210
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCC------------C--------CCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQ------------K--------EGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~------------~--------~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+....+...++-.++.+..|..+.. + -..+.+|||++. |+.+.+++.|.++++
T Consensus 325 ----~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 325 ----DAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERALV 397 (400)
T ss_dssp ----HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence 0111122223333444455544321 0 024589999995 466777778877775
No 216
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.85 E-value=2.9e-19 Score=178.62 Aligned_cols=291 Identities=13% Similarity=0.129 Sum_probs=187.1
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-------hcC
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-------IRG 153 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-------~~~ 153 (463)
+++.+++++.+.+.. ..|.+..+..++|++++++++ . +++++++++++++..++.++ + +
T Consensus 13 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~sGt~a~~~al~~~~~~~~~~~-~ 78 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDS-----KMFTMGEYVKQYETQFAKTFG------S--KYAVMVSSGSTANLLMIAALFFTKKPRL-K 78 (390)
T ss_dssp CCHHHHHHHHHHHHH-----TCCSSCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHTTSSSSCSC-C
T ss_pred CCHHHHHHHHHHHHc-----CCCCCChHHHHHHHHHHHHHC------C--CcEEEECCHHHHHHHHHHHHHhhhhcCC-C
Confidence 388999999888876 235556678999999999985 2 25666666678999999998 6 7
Q ss_pred CCCEEEEc-------------cCcee---c-C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 154 EGDGVVLL-------------FHTTW---K-R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 154 ~gd~Vlvp-------------~g~~~---~-~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
+||+|+++ .|.++ + . +.+.+|+ +.|++.+++ ++++|++++ ++|... +++
T Consensus 79 ~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~---~~g~~~---~~~ 145 (390)
T 3b8x_A 79 KGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDI-ESLKEAVTD------STKAILTVN---LLGNPN---NFD 145 (390)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCH-HHHHHHCCT------TEEEEEEEC---GGGCCC---CHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCH-HHHHHHhCc------CCeEEEEEC---CccChh---hHH
Confidence 99999997 56665 2 2 2478999 999999876 799999984 345443 488
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe--cCCcccCCCCCceeEEEEecCCCh
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH--TVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+|.++|+++|+++|+|++|+........ . + +.. ..+... ..+|.+ + +| +.|++++ .++
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~~~~~---~-------~----g~~-~~~~~~s~~~~k~~-~-~g-~gG~~~~--~~~ 205 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGATFNNK---C-------A----GTF-GLMGTFSSFYSNHI-A-TM-EGGCIVT--DDE 205 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCEETTE---E-------T----TSS-SSEEEEECCTTSSS-C-SS-SCEEEEE--SCH
T ss_pred HHHHHHHHcCCEEEEECcCcccCEECCc---c-------c----ccc-cceEEEEccCCCCC-c-cC-CceEEEe--CCH
Confidence 8889999999999999999854321110 1 1 110 012222 234555 2 23 4599985 344
Q ss_pred hHHHHHHhhhhhc----------------------------cc----CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 294 KTVDEIYKIASIA----------------------------LS----PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 294 ~~~~~l~~~~~~~----------------------------~~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
++.+++....... .+ .+.+...++... ++.+++.
T Consensus 206 ~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--------------l~~l~~~ 271 (390)
T 3b8x_A 206 EIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ--------------LKKLPRF 271 (390)
T ss_dssp HHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH--------------HHHHHHH
Confidence 6777666543211 01 223332222222 2334567
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccC--CceeE-EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC---CCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFT--EGAMY-SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP---GSG 415 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~--~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p---g~~ 415 (463)
.++.+++++++.+.|+++||+.+..+ ..+++ +++.++.+.+ . +.+.+...|.++||.+++ |..
T Consensus 272 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~-~~~~l~~~L~~~gI~v~~~~~~~~ 340 (390)
T 3b8x_A 272 ISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSG----------V-IRKQLVENLNSAGIECRPIVTGNF 340 (390)
T ss_dssp HHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSC----------C-CHHHHHHHHHHTTBCCBCSTTSSG
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCc----------c-cHHHHHHHHHHCCCCeeeecCCch
Confidence 77788889999999998888877653 23432 3433331111 0 223345567788999987 332
Q ss_pred CCC-CC------------------CCcEEEEEec--CCcCcHHHHHHHH
Q 041151 416 FGQ-KE------------------GIFHLRTTIL--PAEEDMPAIMESF 443 (463)
Q Consensus 416 f~~-~~------------------~~~~lRis~~--~~~e~i~~~~~~l 443 (463)
+.. +. ..+.+||++. .+++|++++++.|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 341 LKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp GGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 211 10 0136999999 8899999988876
No 217
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.84 E-value=5.9e-19 Score=183.09 Aligned_cols=323 Identities=12% Similarity=0.050 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-------cCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-------RGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~~ 154 (463)
|..+...+.....+ .....|....+..++.+++.+++.+..|.+ ++++++|+|+++++..++.++. ..+
T Consensus 121 ~~~~~~~~l~~~~n--~~~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~ 196 (515)
T 2jis_A 121 PHALAGRIITESLN--TSQYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQR 196 (515)
T ss_dssp HHHHHHHHHHHHHC--CCTTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhc
Confidence 44454444433322 233456555566677777777777777754 6899999999999998888762 125
Q ss_pred CC------EEEEc-------------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 155 GD------GVVLL-------------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 155 gd------~Vlvp-------------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
|+ .|+++ .|. ++ .+..+.+|+ +.|++++++....+.++++|++++|+||||.+
T Consensus 197 G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~-~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i 275 (515)
T 2jis_A 197 GLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVP-EDLERQIGMAEAEGAVPFLVSATSGTTVLGAF 275 (515)
T ss_dssp CGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCH-HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB
T ss_pred CccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCH-HHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCc
Confidence 75 77776 344 44 334678999 99999998754445468999999999999999
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
.+ +++|+++|+++|+++++|++|+.+.+. ...... ...++ . ...+++.|++|++ +.| .++|++++
T Consensus 276 ~~---l~~I~~la~~~g~~l~vD~a~~~~~~~-~~~~~~---~~~g~----~--~aD~v~~s~hK~l-~~p-~g~G~l~~ 340 (515)
T 2jis_A 276 DP---LEAIADVCQRHGLWLHVDAAWGGSVLL-SQTHRH---LLDGI----Q--RADSVAWNPHKLL-AAG-LQCSALLL 340 (515)
T ss_dssp CC---HHHHHHHHHHHTCEEEEEETTGGGGGG-CTTTGG---GGTTG----G--GCSEEEECTTSTT-CCC-SCCEEEEE
T ss_pred cC---HHHHHHHHHHcCCeEEEehhhhhHHHh-ChhhHh---hcCCC----c--cCCEEEECccccc-CCC-CCeeEEEE
Confidence 77 778888999999999999999987652 111111 01111 1 1237889999998 533 56999997
Q ss_pred cCCCh-hHHHHHHh----hh-hh-----------cc------cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 041151 289 TNIPP-KTVDEIYK----IA-SI-----------AL------SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345 (463)
Q Consensus 289 ~~~~~-~~~~~l~~----~~-~~-----------~~------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
.++ ++++.... +. .. .+ ....+.+.++..++ ....++++.++.
T Consensus 341 --~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~l------------g~~g~~~~~~~~ 406 (515)
T 2jis_A 341 --QDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQ------------GDQGLERRIDQA 406 (515)
T ss_dssp --SCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred --eChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHH------------hHHHHHHHHHHH
Confidence 344 45554211 11 00 00 00122222222222 122345677788
Q ss_pred HHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCC-C-Ch--H------HHHHHHHHhcCeEeeCCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGK-V-PD--V------FYCLRLLEATGISTVPGS 414 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~------~~~~~ll~~~gI~v~pg~ 414 (463)
.++++++.+.|++.||+++.. |..+.+.|.. .|... .+. . .+ . ..+...+.+.|+.+....
T Consensus 407 ~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~--~p~~~------~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~ 478 (515)
T 2jis_A 407 FVLARYLVEEMKKREGFELVMEPEFVNVCFWF--VPPSL------RGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQ 478 (515)
T ss_dssp HHHHHHHHHHHHTSTTEEESSCCSSSEEEEEE--CCGGG------TTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEE--eCccc------cccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 889999999999988988765 4444444421 12210 000 0 01 0 113344556686543211
Q ss_pred CCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~ 448 (463)
.. ....+++|++++ ++++++++++++|+++++
T Consensus 479 ~~--~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 479 PH--GTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp EE--TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EE--CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 11 112358999994 889999999999988764
No 218
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.74 E-value=1.3e-22 Score=206.42 Aligned_cols=312 Identities=12% Similarity=0.052 Sum_probs=198.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... ....|+. ....+|.+.|++++. ..+.+++++++++|+..+++.... ..++.|++
T Consensus 118 ~p~V~~Av~~q~~~~--~~~~~~~-~~~~~Lae~L~~~~p-------~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~ 187 (465)
T 2yky_A 118 HPVIRAAVERALAVG--LNLSTQT-ENEALFAEAVCDRFP-------SIDLVRFTNSGTEANLMALATATAITGRKTVLA 187 (465)
Confidence 677888888877651 2234433 334677777777652 357899999999999999987521 24477777
Q ss_pred c---c-Ccee--c-------------CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CHHHHHHHHHH
Q 041151 161 L---F-HTTW--K-------------RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SEANLREILRF 220 (463)
Q Consensus 161 p---~-g~~~--~-------------~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~~~l~~l~~~ 220 (463)
. + |... . ...+ .|+ +.|++.+++. +.++++|+++..+|+||.+. +.+.+++|.++
T Consensus 188 ~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-~d~-~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l 262 (465)
T 2yky_A 188 FDGGYHGGLLNFASGHAPTNAPYHVVLGVY-NDV-EGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAE 262 (465)
Confidence 6 2 2111 0 0011 267 8899888741 11688888765455699654 67889999999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|++||+++|+||+|. +.. + . ..... ..+...-+.||||++ |. |+|+||++ +++++++.+.
T Consensus 263 ~~~~g~llI~DEv~~-~r~-g-~-~~a~~-----------~~gv~pDi~t~sK~l-g~-G~piG~v~---~~~~i~~~l~ 322 (465)
T 2yky_A 263 ASRCGALLIFDEVMT-SRL-S-G-GGAQE-----------MLGISADLTTLGKYI-GG-GMSFGAFG---GRRDLMERFD 322 (465)
Confidence 999999999999999 643 1 1 11111 111123356899999 64 99999998 6889999887
Q ss_pred h-----h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCcee
Q 041151 301 K-----I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAM 371 (463)
Q Consensus 301 ~-----~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~ 371 (463)
. . ...+++.+++.|.++.+.|+. +++ +.+.+++.++.+++.+.|+++. ++....+..|.
T Consensus 323 ~~~~g~~~~~~T~~~npla~aAa~aaL~~-----------l~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~ 390 (465)
T 2yky_A 323 PARDGAFAHAGTFNNNILTMSAGHAALTQ-----------IYT-RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGS 390 (465)
Confidence 6 2 224678899999998888752 111 2355666777777777776541 22222334556
Q ss_pred EEeeeccC-Ch-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRL-PP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 372 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
++|+.+.- +. .+-+. ..........++. .|.++||++.|+. |+ . +++..+++++++++++|++++++
T Consensus 391 ~~~i~~~~~~~~~~~~~-~~~d~~~~~~~~~-~ll~~GV~v~p~~-~~-------~-~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 391 LGTIHFSRAPIRSAGDV-RAADQQLKELFFF-HMLRKGIYLAPRG-MY-------A-LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 66643321 00 00000 0000001234444 4557899999965 32 1 67778899999999999999887
Q ss_pred HH
Q 041151 450 FM 451 (463)
Q Consensus 450 ~~ 451 (463)
++
T Consensus 460 ~~ 461 (465)
T 2yky_A 460 QR 461 (465)
Confidence 64
No 219
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.82 E-value=5e-19 Score=178.92 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cC-C
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KR-Q 169 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~-~ 169 (463)
..+++++++++++ .. +.|++++| ++++..++.+++ ++||+|+++ .|.++ .. +
T Consensus 60 ~~~l~~~la~~~g------~~-~~v~~~sG-t~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 130 (421)
T 2ctz_A 60 VDVLEKRLAALEG------GK-AALATASG-HAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp HHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred HHHHHHHHHHHhC------CC-ceEEecCH-HHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 4688999998885 22 34555555 999999999987 899999997 23333 11 1
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccc-cccccCCCCCccch
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY-QQNIYQDERPFVSS 248 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay-~~~~~~~~~~~~~~ 248 (463)
. .|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++| +.. + ... .+
T Consensus 131 ~--~d~-~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~-~~~---~~ 193 (421)
T 2ctz_A 131 E--ERP-EEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-Y-LLR---PL 193 (421)
T ss_dssp T--CCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-T-SCC---GG
T ss_pred C--CCH-HHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-c-cCC---cc
Confidence 1 277 999999886 8999999999999999998 788888999999999999999 643 3 111 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
. . . ..+++.|+||++ +.+|.|+|++++
T Consensus 194 -~----~----~---~Di~~~s~~K~l-~~~g~~~G~~~~ 220 (421)
T 2ctz_A 194 -A----W----G---AALVTHSLTKWV-GGHGAVIAGAIV 220 (421)
T ss_dssp -G----G----T---CSEEEEETTTTT-TCSSCCCCEEEE
T ss_pred -c----c----C---CeEEEECCcccc-cCCCCcEEEEEE
Confidence 1 1 1 238899999999 779999999987
No 220
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.81 E-value=4.4e-19 Score=189.36 Aligned_cols=302 Identities=12% Similarity=0.073 Sum_probs=179.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee----c-C
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW----K-R 168 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~----~-~ 168 (463)
-+.++++.+|++++ .+ ..+++++|+++++..++.+++ ++||.|+++ .|+++ . .
T Consensus 174 ~i~e~e~~lA~~~g------ae-~~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYN------AD-KTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTT------CS-EEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHC------CC-cEEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 35788888888875 22 468899999999999999998 999999997 24443 1 1
Q ss_pred CCcc----cChHHHH-----HHHHHHH-Hh-c-CCce-eEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccc
Q 041151 169 QQIG----VLIINDL-----QQSVAQA-RS-K-GITV-RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235 (463)
Q Consensus 169 ~~~~----~d~~~~l-----~~~l~~~-~~-~-~~~~-~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~ 235 (463)
+.++ +|+ +.| ++++++. .+ . .+++ |+|++++| ||+|.+.+ +++|+++|++++++|++|++|.
T Consensus 246 ~~~~i~g~id~-e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~ 320 (730)
T 1c4k_A 246 NPYGFIGGIYD-SDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWV 320 (730)
T ss_dssp CTTCCEEEECG-GGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTC
T ss_pred cccCccCCCCH-HHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcccc
Confidence 2233 688 888 7777641 00 0 0011 89999999 58999987 7788899999999999999997
Q ss_pred cc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhH--------HHHHHhhhh-
Q 041151 236 QN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKT--------VDEIYKIAS- 304 (463)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~--------~~~l~~~~~- 304 (463)
.. .|++..+..+.... ..++ .++.+++++.|+||++ +|.+. |++++ .++.+ ...+.+...
T Consensus 321 ~~~~f~~~~~g~~~l~~-~~~g---~D~~~~iv~~S~hK~L---~g~~~gg~I~v--~~~~l~g~~~~i~~~~~~~~~~~ 391 (730)
T 1c4k_A 321 GYEQFIPMMRNSSPLLI-DDLG---PEDPGIIVVQSVHKQQ---AGFSQTSQIHK--KDSHIKGQLRYCDHKHFNNSFNL 391 (730)
T ss_dssp CGGGSSGGGGGGCTTSC-CCCC---TTSCEEEEEECHHHHS---SCCTTCEEEEE--ECGGGTTSTTCCCHHHHHHHHHH
T ss_pred cccccCcccCCcCcccc-cccC---CCCCCEEEEECCCCCC---CCCCCEEEEEe--cchhhcCcccccCHHHHHHHHHH
Confidence 43 34210100011000 0000 1234689999999987 35554 56644 22221 123333322
Q ss_pred -hcccCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCc------------
Q 041151 305 -IALSPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNS-CRNVVCNFTEG------------ 369 (463)
Q Consensus 305 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g------------ 369 (463)
.+.+++.....++..+++ .... ...+..+++.++.+.+++.|++ ++|+.+..|+.
T Consensus 392 ~~stsp~~~~iaal~aA~~----------~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~ 461 (730)
T 1c4k_A 392 FMSTSPFYPMYAALDVNAA----------MQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTE 461 (730)
T ss_dssp HSCSSCCHHHHHHHHHHHH----------HHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHH
T ss_pred hCCCCCcHHHHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccc
Confidence 123344333333333321 1111 1234566778888888999987 67887755421
Q ss_pred -------------------------e-eE-----EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 370 -------------------------A-MY-----SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 370 -------------------------~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
+ ++ +. +..|.--....+.....-+...+.+.|.++||.+...
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~--i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~----- 534 (730)
T 1c4k_A 462 DMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFM--LTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS----- 534 (730)
T ss_dssp HHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEE--EECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----
T ss_pred cccccchhhccCccchhccccccCCcccccCCeEEE--EEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----
Confidence 1 11 22 2222100000000000113344556677789988652
Q ss_pred CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 419 ~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+...+|++++ .+.++++.++++|+++.+++
T Consensus 535 --~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 535 --DLNSILFLMTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp --CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2346899888 78899999999999887765
No 221
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.81 E-value=1.3e-18 Score=175.16 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhhhc---C-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE---cCCcHHHHHHHHHHHhcCCC
Q 041151 83 ADAIARAKHYLSLT---S-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL---TDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 83 ~~~~~a~~~~~~~~---~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~g 155 (463)
+.+++++.+..... . ...+.|+.. |...|++.+|++++ .+..++ ++|+++++..++.+++ +||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-g~~~Le~~lA~l~g--------~e~alv~p~~~sGt~A~~~al~all-~pG 116 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYNDI-GRDSLDRVYANIFN--------TESAFVRPHFVNGTHAIGAALFGNL-RPN 116 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHTC-CTT
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCch-hHHHHHHHHHHHhC--------CCceEEeCCCCcHHHHHHHHHHHhc-CCC
Confidence 45666665543211 0 123445554 56788888888875 344455 7888999999999998 999
Q ss_pred CEEEEc----c---------------------Ccee---cCCCcccChHHHHHHHHHH-HHhcCCceeEEEEEC----CC
Q 041151 156 DGVVLL----F---------------------HTTW---KRQQIGVLIINDLQQSVAQ-ARSKGITVRAMVIIN----PG 202 (463)
Q Consensus 156 d~Vlvp----~---------------------g~~~---~~~~~~~d~~~~l~~~l~~-~~~~~~~~~~i~l~~----p~ 202 (463)
|+|+++ + |+++ +.+++.+|+ +++++++++ . ++|+|++++ |+
T Consensus 117 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~-e~l~~~i~~~~-----~tklV~i~~s~gyp~ 190 (427)
T 3hvy_A 117 DTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDI-NTVKEELKKDD-----SIKLIHIQRSTGYGW 190 (427)
T ss_dssp CEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCH-HHHHHHHHHCT-----TEEEEEEESSCCSSS
T ss_pred CEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCH-HHHHHHhhCCC-----CCEEEEEECCCCCCC
Confidence 999986 1 1222 225667999 999999983 1 899999998 99
Q ss_pred CCCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 203 NPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 203 NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
||||.+ .++++|+++|++ +|+++++|++|+.+.+. .. +.. . . ..|+++|+||++ |.+|
T Consensus 191 nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~-~~-p~~-------~----g---aDiv~~S~sK~l-gg~g 250 (427)
T 3hvy_A 191 RKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEE-KE-PTD-------V----G---ADIIAGSLIKNI-GGGI 250 (427)
T ss_dssp SCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSS-SC-GGG-------G----T---CSEEEEETTSGG-GTTT
T ss_pred CccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccC-CC-Ccc-------c----C---CeEEEECCcccc-cccc
Confidence 999876 679999999999 89999999999886541 11 111 1 1 238999999999 5444
Q ss_pred -ceeEEEEecCCChhHHHHHHhhhh-hccc--C-ChHH-HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 281 -QRGGYFEMTNIPPKTVDEIYKIAS-IALS--P-NVPA-QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 281 -~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~-~~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
.+.||++ +++++++.+..... ...+ . +.+. ...+... +.....+.++..+++.++.+
T Consensus 251 ~~~GG~i~---~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~g--------------l~~~~~r~~~~~~~a~~la~ 313 (427)
T 3hvy_A 251 ATTGGYIA---GKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEG--------------LFMAPHVTIEAVKGAVFCAR 313 (427)
T ss_dssp CCSCEEEE---ECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEE---ECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHh--------------HhHHHHHHHHHHHHHHHHHH
Confidence 5679998 58999999987542 1111 1 1122 2222222 22334567778889999999
Q ss_pred HhhcCCCccccc
Q 041151 355 GFNSCRNVVCNF 366 (463)
Q Consensus 355 ~L~~~pg~~~~~ 366 (463)
.|+++ |+.+.+
T Consensus 314 ~L~~~-g~~V~p 324 (427)
T 3hvy_A 314 IMELA-GFDVLP 324 (427)
T ss_dssp HHHHT-TCEEES
T ss_pred HHHhC-CCeecC
Confidence 99998 666644
No 222
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.81 E-value=2e-18 Score=173.84 Aligned_cols=229 Identities=9% Similarity=0.066 Sum_probs=157.1
Q ss_pred HHHHHHHHHhh--hcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE---cCCcHHHHHHHHHHHhcCCCC
Q 041151 84 DAIARAKHYLS--LTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL---TDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 84 ~~~~a~~~~~~--~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~gd 156 (463)
.+++++.++.. ... ...+.|+.. |...|++.+|++++ .+..++ ++|+++++..++.+++ +|||
T Consensus 47 ~Vl~A~~~~~~~~~~~~~~~gy~y~~~-~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all-~pGD 116 (427)
T 3i16_A 47 KVLNAFQEERISEAHFTNSSGYGYGDI-GRDSLDAVYARVFN--------TESALVRPHFVNGTHALGAALFGNL-RPGN 116 (427)
T ss_dssp HHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHHC-CTTC
T ss_pred HHHHHHHHhchhHHhcCCCCCCCCCHH-HHHHHHHHHHHHhC--------CcceEEeCCCccHHHHHHHHHHHHh-CCCC
Confidence 46666655321 111 122345443 56788888888875 233355 7888999999999998 8999
Q ss_pred EEEEc----c---------------------Ccee---c-CCCcccChHHHHHHHHH--HHHhcCCceeEEEEEC----C
Q 041151 157 GVVLL----F---------------------HTTW---K-RQQIGVLIINDLQQSVA--QARSKGITVRAMVIIN----P 201 (463)
Q Consensus 157 ~Vlvp----~---------------------g~~~---~-~~~~~~d~~~~l~~~l~--~~~~~~~~~~~i~l~~----p 201 (463)
+|+++ + |+++ + ..++.+|+ +.++++++ + ++|+|++++ |
T Consensus 117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~-e~l~~~l~~~~------~tklV~i~~s~~~p 189 (427)
T 3i16_A 117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNL-EEIEKVLKEDE------SITLVHIQRSTGYG 189 (427)
T ss_dssp EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCH-HHHHHHHHTCT------TEEEEEEECSCCSS
T ss_pred EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCH-HHHHHHhhCCC------CCEEEEEEcCCCCC
Confidence 99986 1 2222 2 23456899 99999998 5 899999998 9
Q ss_pred CCCCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC
Q 041151 202 GNPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC 279 (463)
Q Consensus 202 ~NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 279 (463)
+||||.+ .++++|+++|++ +|+++++|++|..+.+. .. +.. . . ..|+++|+||++ |.+
T Consensus 190 ~nptg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~-~~-p~~-------~----g---aDiv~~S~sK~l-gg~ 249 (427)
T 3i16_A 190 WRRALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDT-KE-PTD-------V----G---ADLIAGSLIKNI-GGG 249 (427)
T ss_dssp SSCCCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSS-SC-GGG-------G----T---CSEEEEETTSGG-GTT
T ss_pred CCCcccH---HHHHHHHHHHHHhCCCCEEEEECCCcccccc-CC-ccc-------c----C---CeEEEecCcccC-CCC
Confidence 9999876 679999999999 99999999999986541 11 111 1 1 238999999999 655
Q ss_pred C-ceeEEEEecCCChhHHHHHHhhhh-hccc--CCh-HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 280 G-QRGGYFEMTNIPPKTVDEIYKIAS-IALS--PNV-PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 280 G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
| .+.||++ +++++++++..... ...+ .+. +. ++..++ +.+.....+.++..+++..+.+
T Consensus 250 g~~~gG~i~---~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~l-----------~gl~~~~~r~~~~~~~a~~la~ 313 (427)
T 3i16_A 250 IAPTGGYLA---GTKDCIEKTSYRLTVPGIGGECGSTFG--VVRSMY-----------QGLFLAPHISMEALKGAILCSR 313 (427)
T ss_dssp TCCSCEEEE---ECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEE---ECHHHHHHHHHhcccCccCccCCccHH--HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5 6789998 58999999987532 1211 111 21 111111 1233344567788899999999
Q ss_pred HhhcCCCccccc
Q 041151 355 GFNSCRNVVCNF 366 (463)
Q Consensus 355 ~L~~~pg~~~~~ 366 (463)
.|+++ |+.+.+
T Consensus 314 ~L~~~-g~~V~p 324 (427)
T 3i16_A 314 IMELA-GFEVMP 324 (427)
T ss_dssp HHHHT-TCEEES
T ss_pred HHHhC-CCeecC
Confidence 99998 666644
No 223
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.80 E-value=3.1e-18 Score=171.81 Aligned_cols=229 Identities=12% Similarity=0.127 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhhh---c-CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE---cCCcHHHHHHHHHHHhcCCC
Q 041151 83 ADAIARAKHYLSL---T-SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL---TDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 83 ~~~~~a~~~~~~~---~-~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~g 155 (463)
..+++++.++... . ....+.|+.. |...|++.+|++++ .+..++ ++|+++++..++.+++ +||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~-~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all-~~G 101 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYDDE-GRDTLERVYATVFK--------TEAALVRPQIISGTHAISTVLFGIL-RPD 101 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTSCSHHHHHHHHHHHHC-CTT
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCChh-HHHHHHHHHHHHhC--------CCcEEEECCCccHHHHHHHHHHHhc-CCC
Confidence 3466676664321 1 1133455554 56788998988875 344455 8888999999999998 899
Q ss_pred CEEEEc----c--------------------Ccee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEEC----CCC
Q 041151 156 DGVVLL----F--------------------HTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIIN----PGN 203 (463)
Q Consensus 156 d~Vlvp----~--------------------g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~----p~N 203 (463)
|+|+++ + |+++ ...++.+|+ +.+++++++ ++++|++++ |+|
T Consensus 102 D~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~-e~l~~ai~~------~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 102 DELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDF-PRIAKKMTP------KTKMIGIQRSRGYADR 174 (409)
T ss_dssp CEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCH-HHHHHHCCT------TEEEEEEECSCTTSSS
T ss_pred CEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCH-HHHHHhccC------CCeEEEEECCCCCCCC
Confidence 999986 1 2233 234566899 999999986 899999998 999
Q ss_pred CCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-
Q 041151 204 PTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG- 280 (463)
Q Consensus 204 PtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G- 280 (463)
|||.+ .++++|+++|++ +|+++++|++|+.+.+. .. +.. . . ..|+++|+||++ |.+|
T Consensus 175 ptg~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~-~~-p~~-------~----g---~Div~~S~sK~l-gg~~~ 234 (409)
T 3jzl_A 175 PSFTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEY-QE-PPE-------V----G---ADIIAGSLIKNP-GGGLA 234 (409)
T ss_dssp CCCCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSS-CC-SGG-------G----T---CSEEEEETTSGG-GTTTC
T ss_pred CcCcc---ccHHHHHHHHHhhCCCCEEEEeCCccccccc-CC-ccc-------c----C---CeEEEECccccC-CccCC
Confidence 99987 568999999999 99999999999986541 11 111 1 1 238999999999 6555
Q ss_pred ceeEEEEecCCChhHHHHHHhhhh---h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIAS---I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~~---~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
.+.||++ +++++++.+..... . ..++....+.++... ++....++++..+++.++.+.
T Consensus 235 ~~GG~v~---~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~g--------------l~~~~~r~~~~~~~a~~la~~ 297 (409)
T 3jzl_A 235 KTGGYIA---GKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQG--------------FFLAPHVTAQAIKGARFTAAM 297 (409)
T ss_dssp SSCEEEE---ECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEE---eCHHHHHHHHHHhccccccccccccHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHH
Confidence 4579998 68999999987542 1 112222112222222 233445677788899999999
Q ss_pred hhcCCCccccc
Q 041151 356 FNSCRNVVCNF 366 (463)
Q Consensus 356 L~~~pg~~~~~ 366 (463)
|+++ |+.+.+
T Consensus 298 L~~~-g~~v~p 307 (409)
T 3jzl_A 298 LAEF-GVEADP 307 (409)
T ss_dssp HHHT-TCEEES
T ss_pred HHhC-CCcccC
Confidence 9998 666643
No 224
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.80 E-value=2.5e-18 Score=173.86 Aligned_cols=212 Identities=11% Similarity=0.090 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------c-------------Ccee
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------F-------------HTTW 166 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------~-------------g~~~ 166 (463)
..++++++++.+.+|......+|+++ |+++++..++.+++ +|||+|+++ . |.++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~-~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~ 142 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL-RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY 142 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC-CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC-CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence 34666666666655654333344466 55899999999997 899999986 1 3343
Q ss_pred ----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhh--CCeEEEeccccccccc
Q 041151 167 ----KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIY 239 (463)
Q Consensus 167 ----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~ 239 (463)
...++.+|+ +.|++++++ ++++|+++ +||||+|...+.+++++|+++|++ +|+++|+|++|+.+.+
T Consensus 143 ~~v~~~~~~~~d~-e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 143 NAVPLTEGGLVDF-EAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp EECCBCTTSSBCH-HHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred EEeCCCCCCCcCH-HHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence 234577899 999999986 89999999 699999999999999999999999 9999999999998765
Q ss_pred CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc----cCChHHH
Q 041151 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL----SPNVPAQ 314 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~----~~~~~~q 314 (463)
+ .. +.. + . ..++++|+||+++|..+...||++ +++++++.+..... ... +++....
T Consensus 216 ~-~~-~~~-------~----g---~Di~~~S~sK~lgg~~~~~GG~v~---~~~~li~~l~~~~~~~~~g~~~~~~~~~~ 276 (431)
T 3ht4_A 216 E-QE-PCH-------V----G---ADLMAGSLIKNPGGGIVKTGGYIV---GKEQYVEACAYRLTSPGIGAEAGASLYSL 276 (431)
T ss_dssp S-CC-GGG-------T----T---CSEEEEETTSGGGTTTCSSCEEEE---ECHHHHHHHHHHHSCTTTTTSCSCCCSCS
T ss_pred C-CC-ccc-------c----C---CeEEEcCccccCCCCCCCceEEEE---ecHHHHHHHHHHhccCCcccccCccHHHH
Confidence 2 11 111 1 1 238999999997331234459999 58999999877543 111 1111112
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 315 IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
.++... +.....+.++..++++++.+.|+++ |+.+.
T Consensus 277 ~~~~~~--------------l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~ 312 (431)
T 3ht4_A 277 QEMYQG--------------FFLAPHVAGQALKGAIFTAAFLEKL-GMNTS 312 (431)
T ss_dssp HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH-TCCEE
T ss_pred HHHHhH--------------hhhHHHHHHHHHHHHHHHHHHHHhC-cCEec
Confidence 222222 2223446677888889999999887 66654
No 225
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.78 E-value=9.1e-18 Score=180.67 Aligned_cols=298 Identities=12% Similarity=0.064 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c--CCCc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K--RQQI 171 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~--~~~~ 171 (463)
.++++.++++++ . .+.+++++|+++++..++.+++ +|||.|+++ .|+++ + .+.+
T Consensus 208 ~~~ee~la~l~G------~-d~~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~ 279 (755)
T 2vyc_A 208 GESEKYAARVFG------A-DRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRY 279 (755)
T ss_dssp HHHHHHHHHHHT------C-SEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTT
T ss_pred HHHHHHHHHHhC------C-CceEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCcc
Confidence 466666776664 2 2468899999999999999998 999999997 45555 2 1223
Q ss_pred c----c-----ChHHHHHHHHHHHH----hcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc-
Q 041151 172 G----V-----LIINDLQQSVAQAR----SKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN- 237 (463)
Q Consensus 172 ~----~-----d~~~~l~~~l~~~~----~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~- 237 (463)
+ + |+ +.|++++++.. ..+.+++++++++| ||||.+.+ +++|+++|++++++|++|++|...
T Consensus 280 g~~g~i~~~~~d~-e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 280 GIIGPIYPQEMQP-ETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp SCBCCCCGGGGSH-HHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred ccccccCcCCCCH-HHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchhc
Confidence 3 4 89 99999997621 12334569999998 79999987 778889999999999999999753
Q ss_pred ccCCCC-CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCCh-hH-HHHHHhhhh--hcccCCh
Q 041151 238 IYQDER-PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPP-KT-VDEIYKIAS--IALSPNV 311 (463)
Q Consensus 238 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~-~~-~~~l~~~~~--~~~~~~~ 311 (463)
.+.+.. +...+ ..... + ....++|++.|+||++ +|.+ .|++++.+ .. .+ ...+..... .+.+++.
T Consensus 355 ~~~~~~~~~~~~--~g~~a--D-~~~~~~iv~~S~hK~L---~g~~~g~~i~~~~-~~~~i~~~~~~~~~~~~~s~sp~~ 425 (755)
T 2vyc_A 355 RFNPIYADHYAM--RGEPG--D-HNGPTVFATHSTHKLL---NALSQASYIHVRE-GRGAINFSRFNQAYMMHATTSPLY 425 (755)
T ss_dssp GGCGGGTTSSSS--CSCCC--C-CSSBEEEEEEETTTSS---SCCTTCEEEEEEC-CBTCCCHHHHHHHHHHTSCSSCCH
T ss_pred ccCcccCCcchh--cCCcC--C-ccCCCeEEEECccccc---cCcCCeeeeeecC-cccccCHHHHHHHHHHhCCCCHHH
Confidence 231100 11111 10000 0 1234789999999987 3555 66676522 10 11 233333322 1234444
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCC---------cccccCC-------------
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRN---------VVCNFTE------------- 368 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg---------~~~~~~~------------- 368 (463)
+...++..+++ ....+ .+...+++.++.+.+++.|++++| +++..|.
T Consensus 426 ~~iaal~aA~~----------~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (755)
T 2vyc_A 426 AICASNDVAVS----------MMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDF 495 (755)
T ss_dssp HHHHHHHHHHH----------HHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEG
T ss_pred HHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccccccccc
Confidence 44443333321 01111 223455566666666666665544 3333221
Q ss_pred ------------------------------cee------EEeeeccCCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEee
Q 041151 369 ------------------------------GAM------YSFPQIRLPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTV 411 (463)
Q Consensus 369 ------------------------------g~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~ 411 (463)
.+. -+. +..+. +.-....+.|+ +...+...|+++||.+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~--i~~~~~~~~G~~~~~g~--~~~~l~~~L~~~gI~~e 571 (755)
T 2vyc_A 496 ADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVS--ILAPGMGEDGELEETGV--PAALVTAWLGRHGIVPT 571 (755)
T ss_dssp GGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEE--EECSCBCTTSSBCSSCC--CHHHHHHHHHTTTCCCS
T ss_pred ccccchhccchhhhhccCcccccccccccCCCccccCCeEEE--EEcCCCCCCCCccccCC--cHHHHHHHHHHCCCEEe
Confidence 111 112 11221 00000000011 22445667788998875
Q ss_pred CCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 412 PGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 412 pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.. +.+.+|++++ .+.++++.++++|+++.+.+
T Consensus 572 ~~-------~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 572 RT-------TDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp EE-------CSSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ec-------CCCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 42 2347999999 79999999999999887654
No 226
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.76 E-value=2e-17 Score=163.66 Aligned_cols=294 Identities=13% Similarity=0.055 Sum_probs=191.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCc-c--CC-----CCCCHHHHHHHHHHHHHhcCCCCCC-CcEEE-cCCcHHHHHHHHHHHh
Q 041151 82 PADAIARAKHYLSLTSGGLGA-Y--SD-----SRGIPGVRKEVAEFIERRDGYPSDP-ELIFL-TDGASKGVMQTLNCVI 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~-Y--~~-----~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~-t~G~~~al~~~~~~l~ 151 (463)
|+++++++.+.+.++..+..+ + +. ..-+.+.|+.++++++ ++. ++|++ |.|++++++.++..++
T Consensus 25 p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~a~~~l~ 98 (377)
T 3e77_A 25 PHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLA------VPDNYKVIFLQGGGCGQFSAVPLNLI 98 (377)
T ss_dssp CHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCCeEEEEcCchHHHHHHHHHhcc
Confidence 999999999877653211111 1 10 1112466777788876 544 47888 5899999999999998
Q ss_pred cCC--CCEEEEc---------------cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGE--GDGVVLL---------------FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~--gd~Vlvp---------------~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
.+ ||+|++. .|..+ + +.+++.++ +.++..+++ ++++|.+++..|.||.+.+
T Consensus 99 -~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~-~~~~~~i~~------~t~lV~~~h~et~tG~~~p 170 (377)
T 3e77_A 99 -GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIP-DPSTWNLNP------DASYVYYCANETVHGVEFD 170 (377)
T ss_dssp -GGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCC-CGGGCCCCT------TCSCEEEESEETTTTEECS
T ss_pred -CCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCC-ChHHhccCC------CccEEEEeCccCchheEch
Confidence 55 8987664 45444 2 23456677 766655555 8999999999999999998
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
. +|+++++++++|.+.+.... +..+. +.+ +++.|..|++ |++| +|++++
T Consensus 171 i--------i~~~~~~~~~vD~~q~~g~~-----~id~~-----------~~~--~~~~s~~K~~-gp~G--~g~l~~-- 219 (377)
T 3e77_A 171 F--------IPDVKGAVLVCDMSSNFLSK-----PVDVS-----------KFG--VIFAGAQKNV-GSAG--VTVVIV-- 219 (377)
T ss_dssp S--------CCCCTTCCEEEECTTTTTSS-----CCCGG-----------GCS--EEEEEGGGTT-SCTT--CEEEEE--
T ss_pred h--------hhccCCCEEEEEcccccCCC-----CCchh-----------hcC--EEEEeccccc-CCCc--cEEEEE--
Confidence 4 47789999999999886432 23332 222 4678999999 8999 677775
Q ss_pred CChhHHHHHH----------hh---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIY----------KI---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDG 355 (463)
Q Consensus 291 ~~~~~~~~l~----------~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 355 (463)
++++++.+. .. .....+++....+++.++++ ...++ ++.+.++.++..+++++.
T Consensus 220 -~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~----------~l~~~GG~~~i~~~~~~l~~~l~~~ 288 (377)
T 3e77_A 220 -RDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLE----------WIKNNGGAAAMEKLSSIKSQTIYEI 288 (377)
T ss_dssp -ETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHH
Confidence 333321111 11 11223445555555555552 12232 567888899999999999
Q ss_pred hhcCCCcccccC----CceeEEeeeccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEE
Q 041151 356 FNSCRNVVCNFT----EGAMYSFPQIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRT 427 (463)
Q Consensus 356 L~~~pg~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRi 427 (463)
|+++||+.+.+. ..+..+.+.+ |. +.. +..++ ..+.++||.+++|... .+.+|+
T Consensus 289 L~~~~g~~~~~~~~~~rs~~ivsf~~--~~----------~~~~~~~~~~~l-~~l~~~Gi~~~~g~~~-----~g~iRi 350 (377)
T 3e77_A 289 IDNSQGFYVCPVEPQNRSKMNIPFRI--GN----------AKGDDALEKRFL-DKALELNMLSLKGHRS-----VGGIRA 350 (377)
T ss_dssp HHTSTTSEECCSCGGGBCSSEEEEEE--SS----------TTCCHHHHHHHH-HHHHHTTEESCBCCTT-----TCSEEE
T ss_pred HHhcCCceecCCCHHHcCCcEEEEEc--CC----------CCCchhHHHHHH-HHHHHCCcEEeCCCCc-----CCEEEE
Confidence 999888874331 1233333223 21 001 12333 3455789999887632 125999
Q ss_pred Eec--CCcCcHHHHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|+. ++++|++.+++.|++++++
T Consensus 351 S~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 351 SLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999 7899999999999988765
No 227
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.70 E-value=2.8e-16 Score=154.78 Aligned_cols=290 Identities=12% Similarity=0.124 Sum_probs=188.0
Q ss_pred cHHHHHHHHHHhhhcCCC-CCcc--CC-----CCCCHHHHHHHHHHHHHhcCCCCC-CCcEEE-cCCcHHHHHHHHHHHh
Q 041151 82 PADAIARAKHYLSLTSGG-LGAY--SD-----SRGIPGVRKEVAEFIERRDGYPSD-PELIFL-TDGASKGVMQTLNCVI 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y--~~-----~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~-t~G~~~al~~~~~~l~ 151 (463)
|+++++++.+.+.++..+ ...| +. ..-+.+.|+.++++++ ++ +++|++ |+|++++++.++..++
T Consensus 17 ~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~------~~~~~~v~f~t~~~T~a~n~~~~~~~ 90 (361)
T 3m5u_A 17 PLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE------LNDDYEVLFLQGGASLQFAMIPMNLA 90 (361)
T ss_dssp CHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCcHHHHHHHHHHhcC
Confidence 999999998877642111 1111 11 1123467777777776 54 448888 9999999999999996
Q ss_pred cCCCCEE--EEc-------------cCcee---c-CCCcc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGEGDGV--VLL-------------FHTTW---K-RQQIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~gd~V--lvp-------------~g~~~---~-~~~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
+||++ ++. +|+++ + +.+.. +++ +. + +++ ++++|.+++..|.||.+.+
T Consensus 91 --~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~-~~-~--l~~------~t~lv~~~~~e~~tG~~~~ 158 (361)
T 3m5u_A 91 --LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIP-RV-E--FSD------NADYAYICSNNTIYGTQYQ 158 (361)
T ss_dssp --CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCC-CC-C--CCT------TSSEEEEESEETTTTEECS
T ss_pred --CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCC-hh-h--cCC------CCCEEEEeCCCCCcceeCC
Confidence 67754 332 56666 2 22222 455 65 3 655 7999999999999999876
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
. +++ +++++++|.+.+.... +..+ .+ ..+++.|..|++ |++| +|++++
T Consensus 159 ~--------i~~-~~~~~~vD~~q~~g~~-----~id~-----------~~--~d~~~~s~~K~~-gp~G--~g~l~~-- 206 (361)
T 3m5u_A 159 N--------YPK-TKTPLIVDASSDFFSR-----KVDF-----------SN--IALFYGGVQKNA-GISG--LSCIFI-- 206 (361)
T ss_dssp S--------CCC-CSSCEEEECGGGTTSS-----CCCC-----------TT--EEEEEEETTTTS-SCTT--CEEEEE--
T ss_pred c--------ccc-cCCEEEEEcccccCCC-----CCCc-----------cc--CCEEEEechhcc-CCCc--cEEEEE--
Confidence 2 344 4999999999886432 2222 22 237889999999 8899 788885
Q ss_pred CChhHHHHHHh-----------h--hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYK-----------I--AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTD 354 (463)
Q Consensus 291 ~~~~~~~~l~~-----------~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 354 (463)
++++.+.+.. . .. ...+++.....++.++++ ...++ ++.+.++.++..+++++
T Consensus 207 -~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~----------~l~~~gG~~~i~~~~~~l~~~l~~ 275 (361)
T 3m5u_A 207 -RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD----------WLLNQGGLDKVHEKNSQKATMLYE 275 (361)
T ss_dssp -EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHH
Confidence 7777766643 1 11 123445555555555542 12233 56778888999999999
Q ss_pred HhhcCCCc-cccc-CC--ceeEEeeeccCCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 355 GFNSCRNV-VCNF-TE--GAMYSFPQIRLPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 355 ~L~~~pg~-~~~~-~~--g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
.|++++|+ .... ++ ....+. +.+|. ..+ +.++ ...|.++||.+++|...- +.+|+|+
T Consensus 276 ~L~~~~g~~~~~~~~~~rs~~ivs--f~~~~~~~~----------~~~~-~~~L~~~gI~~~~g~~~~-----g~iRiS~ 337 (361)
T 3m5u_A 276 CIDLSNGFYKGHADKKDRSLMNVS--FNIAKNKDL----------EPLF-VKEAEEAGMIGLKGHRIL-----GGIRASI 337 (361)
T ss_dssp HHHTSTTSEEESSCGGGBCSSEEE--EEESSCTTH----------HHHH-HHHHHHTTEECCBCCTTT-----CSEEEEC
T ss_pred HHHHCCCeeeccCCHHHcCCeEEE--EECCCchhh----------hHHH-HHHHHHCCCEEecCCCcc-----CeEEEEc
Confidence 99998766 4322 21 222333 23332 100 2333 356788899998875421 2499999
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. ++.+|++.+++.|+++.++.
T Consensus 338 ~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 338 YNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 9 78999999999999887653
No 228
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.70 E-value=8.6e-17 Score=159.88 Aligned_cols=292 Identities=11% Similarity=0.103 Sum_probs=185.4
Q ss_pred CcHHHHHHHHHHhhhcCCC------CCccCC--CCCCHHHHHHHHHHHHHhcCCCCCC-CcEEE-cCCcHHHHHHHHHHH
Q 041151 81 FPADAIARAKHYLSLTSGG------LGAYSD--SRGIPGVRKEVAEFIERRDGYPSDP-ELIFL-TDGASKGVMQTLNCV 150 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~------~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~-t~G~~~al~~~~~~l 150 (463)
+|+++++++.+.+.+...+ ....+. ..-+.+.|+.++++++ ++. ++|++ |+|++++++.++..+
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEEESCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHHHHhc
Confidence 3999999997665432110 111111 3456789999999997 543 47888 689999999999999
Q ss_pred hcCCCCEEEEc---------------cCcee---cCC--Ccc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 151 IRGEGDGVVLL---------------FHTTW---KRQ--QIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 151 ~~~~gd~Vlvp---------------~g~~~---~~~--~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
+ .+||+|++. .| .+ +.+ .++ +++ +.++.++++ ++++|.+++-.|.||.+
T Consensus 112 ~-~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~-~~~~~~l~~------~t~lV~~~h~et~tG~~ 182 (386)
T 3qm2_A 112 L-GDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVK-PMREWQLSD------NAAYLHYCPNETIDGIA 182 (386)
T ss_dssp C-TTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEEC-CGGGCCCCT------TCSCEEECSEETTTTEE
T ss_pred c-CCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCc-hHHHhhcCC------CCcEEEEECCcCCcCEe
Confidence 8 899987643 55 55 332 233 677 778777765 89999888888999996
Q ss_pred -CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 -LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 -~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
.+.++ | + +++++++|.+.+.... +..+. +.+ +.+.|..|++ |++| +|+++
T Consensus 183 i~pi~~---i---~--~g~~~~vDa~qs~g~~-----pidv~-----------~~~--~~~~s~hK~l-GP~G--~g~l~ 233 (386)
T 3qm2_A 183 IDETPD---F---G--PEVVVTADFSSTILSA-----PLDVS-----------RYG--VIYAGAQKNI-GPAG--LTLVI 233 (386)
T ss_dssp CCCCCC---C---C--TTCCEEEECTTTTTSS-----CCCGG-----------GCS--EEEEETTTTT-CCTT--EEEEE
T ss_pred cCchhh---h---c--CCCEEEEEcccccCCC-----CCCcc-----------ccC--EEEEeccccc-CCCc--cEEEE
Confidence 55333 3 2 7999999999886322 23332 222 4668999999 8889 78888
Q ss_pred ecCCChhHHHHHH----------hh---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHH
Q 041151 288 MTNIPPKTVDEIY----------KI---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMM 352 (463)
Q Consensus 288 ~~~~~~~~~~~l~----------~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 352 (463)
+ ++++++.+. .. .....+++.....++.++++ ...++ ++.+.++.++.++++
T Consensus 234 v---~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~----------~~~~~gG~~~i~~~~~~l~~~l 300 (386)
T 3qm2_A 234 V---REDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFK----------WLKAQGGVAAMHKINQQKAELL 300 (386)
T ss_dssp E---EGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHH----------HHHHHTHHHHHHHHHHHHHHHH
T ss_pred E---CHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHH
Confidence 6 444422111 11 11123455555556655552 22333 567888889999999
Q ss_pred HHHhhcCCCc-ccc-cC--CceeEEeeeccCCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEE
Q 041151 353 TDGFNSCRNV-VCN-FT--EGAMYSFPQIRLPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRT 427 (463)
Q Consensus 353 ~~~L~~~pg~-~~~-~~--~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRi 427 (463)
++.|+++ |+ ... .+ .....+. +.+|. +. +..+. ..|.++||.+++|...- +.+|+
T Consensus 301 ~~~l~~~-~~~~~~~~~~~rs~~iv~--f~~~~~~~-----------~~~~~-~~L~~~gI~~~~g~~~~-----~~iRi 360 (386)
T 3qm2_A 301 YGVIDNS-DFYRNDVAQANRSRMNVP--FQLADNTL-----------DKVFL-EESFAAGLHALKGHRVV-----GGMRA 360 (386)
T ss_dssp HHHHHTC-SSEECCBCGGGBCSSEEE--EEESSGGG-----------HHHHH-HHHHHTTEECCBCCTTT-----CSEEE
T ss_pred HHHHHHC-CCcccCCCHHHcCceEEE--EECCCccc-----------cHHHH-HHHHHCCCEEeCCCCCc-----CeEEE
Confidence 9999987 54 221 11 1222333 23332 11 33443 34788999998875432 24999
Q ss_pred Eec--CCcCcHHHHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|+. ++++|++.+++.|+++.++
T Consensus 361 S~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 361 SIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHh
Confidence 999 6899999999999988765
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.70 E-value=2.2e-16 Score=167.32 Aligned_cols=297 Identities=10% Similarity=0.044 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-----cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW-----KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~-----~~~~ 170 (463)
+.++++.+|++++ ....+++++|++.++..++.+++ +|||.|+++ .|+++ ..+.
T Consensus 197 i~eaE~~lA~~fG-------a~~a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~ 268 (715)
T 3n75_A 197 HKEAEQYIARVFN-------ADRSYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (715)
T ss_dssp HHHHHHHHHHHHT-------CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCT
T ss_pred HHHHHHHHHHHhC-------CCCceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccc
Confidence 4688999999986 23467788998999999999998 999999998 56665 1233
Q ss_pred ccc---------ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccc-cC
Q 041151 171 IGV---------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI-YQ 240 (463)
Q Consensus 171 ~~~---------d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~-~~ 240 (463)
+++ |+ +.|++++++..+. +.++++++++| ||+|.+++ +++|+++|++++ +++||+|.... |.
T Consensus 269 ~gi~~~i~~~~~d~-e~Le~~l~~~~~~-k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~f~ 340 (715)
T 3n75_A 269 YGILGGIPQSEFQH-ATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFS 340 (715)
T ss_dssp TCCBCCCCGGGGSH-HHHHHHHHHSTTC-CSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGGGS
T ss_pred cccccCcccccCCH-HHHHHHHhhCcCc-cCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEccccccccccC
Confidence 443 89 9999999862100 01348999999 99999998 566677777663 78999998653 42
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMG 318 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~ 318 (463)
+..+..+.... +. ..+.-++++.|+||+++|+++ .|++.+. +.-....+.+... .+.+++.+..+++.
T Consensus 341 ~~~~~~~al~~--g~----~aD~vii~~~S~hKtL~gltq--gs~i~v~--~~i~~~~~~~~~~~~~STSpsy~~~Asld 410 (715)
T 3n75_A 341 PIYEGKCGMSG--GR----VEGKVIYETQSTHKLLAAFSQ--ASMIHVK--GDVNEETFNEAYMMHTTTSPHYGIVASTE 410 (715)
T ss_dssp GGGTTSSTTSS--SC----CTTCEEEEEECHHHHSSCCTT--CEEEEEE--SCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred Ccccccccccc--Cc----CCCEEEEEEecccccccCCCC--eeEEEeC--chhhHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 11110111000 00 012123679999999843223 6888762 2222344544443 23444554444444
Q ss_pred HhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCC------cccccCC----------------------
Q 041151 319 LMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRN------VVCNFTE---------------------- 368 (463)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg------~~~~~~~---------------------- 368 (463)
.+++ +++ +..++++++.++.+.+++.|+++++ +++..++
T Consensus 411 aA~~-----------~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~ 479 (715)
T 3n75_A 411 TAAA-----------MMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNI 479 (715)
T ss_dssp HHHH-----------HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTC
T ss_pred HHHH-----------HHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccccc
Confidence 4431 221 2344667777777788887776532 2332221
Q ss_pred -ceeEEe--ee--ccCChhhHH-HHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHH
Q 041151 369 -GAMYSF--PQ--IRLPPKAIE-AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMES 442 (463)
Q Consensus 369 -g~~~~~--~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~ 442 (463)
.+++.+ .+ +..+.-..+ .....|+ ....+.+.|+++||.+.-.+.+.. .+=++++.+.+++++++++
T Consensus 480 ~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi--~g~~~~~~L~~~~I~~E~~d~~~v-----l~l~s~g~~~~~~~~L~~a 552 (715)
T 3n75_A 480 DNEHMYLDPIKVTLLTPGMEKDGTMSDFGI--PASIVAKYLDEHGIVVEKTGPYNL-----LFLFSIGIDKTKALSLLRA 552 (715)
T ss_dssp CSSSEEECTTEEEEECSCBCTTSCBCSSCC--CHHHHHHHHHHTTCCCSEEETTEE-----EEECCTTCCHHHHHHHHHH
T ss_pred ccCcccCCCeEEEEEcCCCCCCCccccCCC--cHHHHHHHHHHCCCEEEecCCCcE-----EEEeCCCCCHHHHHHHHHH
Confidence 011110 00 111110000 0000011 234466778889998876554332 2344555777888888888
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|.++-+.
T Consensus 553 L~~~~~~ 559 (715)
T 3n75_A 553 LTDFKRA 559 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 230
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.61 E-value=9.7e-15 Score=147.53 Aligned_cols=310 Identities=11% Similarity=0.057 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... .+...+..-..+|.+.|++.+. ..+.|++++++++|+..+++.... ...++|+.
T Consensus 105 hp~v~~Av~~q~~~~---~~~~~~~~~~~~lae~l~~~~p-------~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~ 174 (454)
T 4ao9_A 105 APEIRDAVIEAMQGG---INLTGHNLLEGRLARLICERFP-------QIEQLRFTNSGTEANLMALTAALHFTGRRKIVV 174 (454)
T ss_dssp CHHHHHHHHHHHHTC---SCCCSEESSHHHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHhcC---CCccCCcHHHHHHHHHHHHhCC-------CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEE
Confidence 789999999888762 1111122223455555555542 457999999999999999987631 12355555
Q ss_pred c----cCcee-----------cCC---CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-CCHHHHHHHHHHh
Q 041151 161 L----FHTTW-----------KRQ---QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-LSEANLREILRFC 221 (463)
Q Consensus 161 p----~g~~~-----------~~~---~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a 221 (463)
. +|... +.+ ..--|. +.+++.+++. ++++.+|++.-.....|.+ .+++-+++|.++|
T Consensus 175 ~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~-~~l~~~l~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 175 FSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDA-QTARAQIERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp ETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCH-HHHHHHHHHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHH
T ss_pred EeCCcCCccccccccccCccCCCCcccCCCchH-HHHHHHHhhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHH
Confidence 4 33222 000 001266 8999988763 2256777665334445755 4677799999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++||+++|+||++.. .. + . .+.. ..+|+ ..+ | .+++|.+ | .|+.+|.++ +.+++.+.+..
T Consensus 251 ~~~g~lLI~DEV~tG-R~-G-~---~~a~--e~~gv--~PD---i--~t~gK~l-g-gG~Piga~~---~~~ei~~~~~~ 310 (454)
T 4ao9_A 251 TQVGALLVFDEVMTS-RL-A-P---HGLA--NKLGI--RSD---L--TTLGKYI-G-GGMSFGAFG---GRADVMALFDP 310 (454)
T ss_dssp HHHTCEEEEECTTGG-GG-S-T---TCHH--HHHTC--CCS---E--EEEEGGG-G-TTSSCEEEE---ECHHHHGGGCT
T ss_pred hhcCCEEEEECCCcC-CC-c-c---ccch--hccCC--CCc---E--EEecccc-C-CCCcceeee---eHHHHHHHHhh
Confidence 999999999999973 22 1 1 1111 12222 222 2 4789999 4 689999998 58888887753
Q ss_pred h-----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcc-cccCCceeE
Q 041151 302 I-----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVV-CNFTEGAMY 372 (463)
Q Consensus 302 ~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~-~~~~~g~~~ 372 (463)
. ...+++.++++..++.+.|+-. + .+++.+++.++-++|.+.|+++ .++. -+...|.++
T Consensus 311 ~~~~~~h~~T~~gnPla~AAala~L~~l-----------~-~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~ 378 (454)
T 4ao9_A 311 RTGPLAHSGTFNNNVMTMAAGYAGLTKL-----------F-TPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLM 378 (454)
T ss_dssp TTCSCCCCCTTTTCHHHHHHHHHHHHHT-----------S-CHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEE
T ss_pred ccCCccccCCCCCCHHHHHHHHHHHHHH-----------h-ccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEE
Confidence 2 2235677888888887776421 1 1234445555555666655542 0211 122233333
Q ss_pred Eeeec-cCCh-hhHHHHhhcCCCCh--HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 373 SFPQI-RLPP-KAIEAAKRAGKVPD--VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 373 ~~~~~-~~~~-~~~~~~~~~~~~~~--~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
-+ .+ +.+. .. ......+. ...+...+.++||++.|.. ++.++...+++||++++++|++++.
T Consensus 379 gi-~f~~~~~~~~----~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~---------~~~~s~~~T~~dId~~l~al~~~l~ 444 (454)
T 4ao9_A 379 NA-HFVQGDVRSS----EDLAAVDGRLRQLLFFHLLNEDIYSSPRG---------FVVLSLPLTDADIDRYVAAIGSFIG 444 (454)
T ss_dssp EE-ESCCSCCCSG----GGGTTCCHHHHHHHHHHHHHTTEECCTTC---------EEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EE-EEecCCCCCH----HHHHhhhHHHHHHHHHHHHHCCEEEcCCC---------CEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 21 11 1110 00 00000111 1222334567899987721 4566666889999999999999998
Q ss_pred HHH
Q 041151 449 EFM 451 (463)
Q Consensus 449 ~~~ 451 (463)
++.
T Consensus 445 ~~~ 447 (454)
T 4ao9_A 445 GHG 447 (454)
T ss_dssp HSG
T ss_pred hcc
Confidence 753
No 231
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.55 E-value=4.9e-13 Score=136.11 Aligned_cols=320 Identities=13% Similarity=0.064 Sum_probs=187.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCC-CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-----c-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRG-IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-----R-GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g-~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----~-~~ 154 (463)
++.+.+++.+++.+. ..|+...+ ..+....+|+.+.+... .+.+.|++++++++|++.+++... + .+
T Consensus 85 ~p~v~~Ai~~q~~~l----~~~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~ 158 (473)
T 4e3q_A 85 HKGLIDAAKAQYERF----PGYHAFFGRMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKP 158 (473)
T ss_dssp CHHHHHHHHHHHHHC----CCCCCCTTEEEHHHHHHHHHHHHHSS--CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc----ccccccccccCHHHHHHHHHHHhhCC--CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence 788999999888763 12322222 23444556666654422 234689999999999999998642 1 23
Q ss_pred CC-EEEEc----cCcee--------------------------cC----CCccc--------ChHHHHHHHHHHHHhcCC
Q 041151 155 GD-GVVLL----FHTTW--------------------------KR----QQIGV--------LIINDLQQSVAQARSKGI 191 (463)
Q Consensus 155 gd-~Vlvp----~g~~~--------------------------~~----~~~~~--------d~~~~l~~~l~~~~~~~~ 191 (463)
+. +|+.- +|... +. ...+- .. +++++.+..... .
T Consensus 159 ~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~--~ 235 (473)
T 4e3q_A 159 QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLA-RELEETIQREGA--D 235 (473)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHH-HHHHHHHHHHCG--G
T ss_pred CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHH-HHHHHHHHhhCC--C
Confidence 43 44443 22211 00 00000 12 345555544311 1
Q ss_pred ceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++-+|++.--..-.|.+ .+++-+++|.++|++||+++|.||+...|.-. +. -+.. ..+|+ ..+ | -+
T Consensus 236 ~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRt-G~---~fa~--e~~gv--~PD---i--~t 302 (473)
T 4e3q_A 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT-GN---TWGC--VTYDF--TPD---A--II 302 (473)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTT-SS---SCHH--HHTTC--CCS---E--EE
T ss_pred ceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcc-cc---hhHH--HhcCC--CCC---h--HH
Confidence 45666555333335654 45667999999999999999999999875221 11 1111 12222 222 2 46
Q ss_pred CCcccCCCCCceeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 271 VSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 271 ~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
++|.+ +-.++.+|.++ +++++.+.+... ...+++.++++..++.+.|+ .++ .+.+.
T Consensus 303 ~~K~l-~gG~~Pl~av~---~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~-----------~i~-~~~l~ 366 (473)
T 4e3q_A 303 SSKNL-TAGFFPMGAVI---LGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAID-----------VVM-NEGLA 366 (473)
T ss_dssp ECGGG-GTTSSCCEEEE---ECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHH-----------HHH-HSSHH
T ss_pred hcccc-cCCCCCccccc---ccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhh-----------hhc-cccHH
Confidence 88999 53338999999 488898887543 12467778888888877763 222 22355
Q ss_pred HHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCC---ChHHHHHHHHHhcCeEeeCCCCC
Q 041151 343 ESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV---PDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
++.++.-++|.+.|+++ |.+.-+...| ++.-+.+.-+.. +..... .-...+...+.++||+++|..
T Consensus 367 ~~~~~~g~~l~~~L~~l~~~~~v~~vRG~G-l~~gielv~~~~-----~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-- 438 (473)
T 4e3q_A 367 ENVRRLAPRFEERLKHIAERPNIGEYRGIG-FMWALEAVKDKA-----SKTPFDGNLSVSERIANTCTDLGLICRPLG-- 438 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTT-----TTBCCCGGGCHHHHHHHHHHHTTEECEEET--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEEeecc-eEEEEEEecCcc-----ccccccccHHHHHHHHHHHHHCCcEEEecC--
Confidence 55666666677666653 4443233333 333222211100 000010 113344566778899998732
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+.+|++.. .+++++++++++|.++++++.++
T Consensus 439 ------~~i~l~PPL~it~~eid~~~~~l~~al~~v~ae 471 (473)
T 4e3q_A 439 ------QSVVLCPPFILTEAQMDEMFDKLEKALDKVFAE 471 (473)
T ss_dssp ------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 26899877 78999999999999999988765
No 232
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.52 E-value=7.5e-12 Score=123.36 Aligned_cols=312 Identities=13% Similarity=0.045 Sum_probs=189.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~ 153 (463)
++.++++.-..+.+. ...+||. .+-..++.....+...+.+|.....- ||..-+| ++|...++.+|+ +
T Consensus 67 S~aV~~a~gS~ltnK--YaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SG-s~AN~avy~All-~ 142 (490)
T 3ou5_A 67 SRAALEALGSCLNNK--YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG-SPANLAVYTALL-Q 142 (490)
T ss_dssp CHHHHHHHTSGGGTC--CCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH-HHHHHHHHHHHC-C
T ss_pred CHHHHHHhcCccccc--ccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCH-HHHHHHHHHHHc-C
Confidence 778888887776652 2334432 22223444444445556666443211 5666666 678999999998 9
Q ss_pred CCCEEEEc---cCcee-------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC
Q 041151 154 EGDGVVLL---FHTTW-------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205 (463)
Q Consensus 154 ~gd~Vlvp---~g~~~-------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt 205 (463)
|||+|+.. .|+.+ ..+...+|. +++++..... +||+|+.-.-.+|
T Consensus 143 PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDy-d~~~~~A~~~-----kPklIi~G~SaY~- 215 (490)
T 3ou5_A 143 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDY-NQLALTARLF-----RPRLIIAGTSAYA- 215 (490)
T ss_dssp -CCCEECBC----------------------------CBCEETTTTEECH-HHHHHHHHHH-----CCSEEEECCSSCC-
T ss_pred CCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccH-HHHHHHHhhc-----CCCeEEECCccCc-
Confidence 99999885 22221 234566999 9999999887 9999987665555
Q ss_pred ccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 206 G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
..++ .+++.++|.+.|.++++|-+|-......+ .+++.... .+ |+..|.+|+| .|=|.|.
T Consensus 216 -r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g-~~psP~~~--------AD----vVTtTTHKTL---rGPrGG~ 275 (490)
T 3ou5_A 216 -RLID---YARMREVCDEVKAHLLADMAHISGLVAAK-VIPSPFKH--------AD----IVTTTTHKTL---RGARSGL 275 (490)
T ss_dssp -SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCGGGT--------CS----EEEEESSSTT---CSCSCEE
T ss_pred -cccC---HHHHHHHHhhcccEEEechhhhhhhhccc-ccCCcccc--------ce----EEeccccccc---cCCCceE
Confidence 4455 55666666689999999999954332122 22232221 22 7889999998 6888999
Q ss_pred EEecCCC------------hhHHHHHHhhh-hhcccCChHHHHHHHHh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 286 FEMTNIP------------PKTVDEIYKIA-SIALSPNVPAQIFMGLM-VNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 286 ~~~~~~~------------~~~~~~l~~~~-~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
|.+.++- .++.+++.+.- ...-+.+.....++.+. +. +....+.+.-.++..+|.+.
T Consensus 276 Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~---------Ea~~p~fk~Ya~qVv~NAka 346 (490)
T 3ou5_A 276 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK---------QACTPMFREYSLQVLKNARA 346 (490)
T ss_dssp EEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHH
T ss_pred EEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHH---------HHHhHhHHHHHHHHHHHHHH
Confidence 9862210 04566665543 32223333333333222 21 11112233445567888999
Q ss_pred HHHHhhcCCCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEE
Q 041151 352 MTDGFNSCRNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLR 426 (463)
Q Consensus 352 l~~~L~~~pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lR 426 (463)
|.+.|.+. |++++.. ..+-.+++++. +.+ -+...+..+|++.||.+. |+.. .+-....||
T Consensus 347 LA~~L~~~-G~~vvsGgTdnHlvLvDl~-~~g-----------~tG~~ae~~Le~agItvNkN~iP~D~--sp~~~SGiR 411 (490)
T 3ou5_A 347 MADALLER-GYSLVSGGTDNHLVLVDLR-PKG-----------LDGARAERVLELVSITANKNTCPGDR--SAITPGGLR 411 (490)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECG-GGT-----------CCHHHHHHHHHHTTEECEEECCTTCC--CSSSCSEEE
T ss_pred HHHHHHhC-CCeeecCCCCceEEEEecc-ccC-----------CCHHHHHHHHHHcCcEECCCCCCCCC--CCCCCCeeE
Confidence 99999987 8888742 23346666664 111 144557788999999986 5441 111223699
Q ss_pred EEec------CCcCcHHHHHHHHHHHHH
Q 041151 427 TTIL------PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 427 is~~------~~~e~i~~~~~~l~~~l~ 448 (463)
|... ..++|+++..+-|.+++.
T Consensus 412 iGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 412 LGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9987 456788888777777664
No 233
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.49 E-value=4.5e-13 Score=135.86 Aligned_cols=320 Identities=12% Similarity=0.016 Sum_probs=180.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+++.........+.+. +...++++.+.+.... -..+.+++++++++|+..+++.... .....|+.
T Consensus 82 ~p~v~~Ai~~q~~~~~~~~~~~~~~----~~~~~lae~L~~~~p~-~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~ 156 (456)
T 4atq_A 82 DPAVVAAVQEAAAHFTHTCFMVTPY----EGYVAVTEQLNRLTPG-DHAKRTVLFNSGAEAVENAVKVARLATGRDAVVA 156 (456)
T ss_dssp CHHHHHHHHHHHHHCSCCTTTTSCC----HHHHHHHHHHHHHSSC-SSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHhhccCcccCccCc----HHHHHHHHHHHHhCCC-CCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEE
Confidence 7899999988887632111122222 2333444544433110 0235789999999999999986531 23345555
Q ss_pred c----cCcee--------------------------c-------CCCcccChHHHHHHHHHHHHh--cCCceeEEEEECC
Q 041151 161 L----FHTTW--------------------------K-------RQQIGVLIINDLQQSVAQARS--KGITVRAMVIINP 201 (463)
Q Consensus 161 p----~g~~~--------------------------~-------~~~~~~d~~~~l~~~l~~~~~--~~~~~~~i~l~~p 201 (463)
. +|... + ......+. +.+++.+..... .+.++.+|++.--
T Consensus 157 ~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~iAAvivEPi 235 (456)
T 4atq_A 157 FDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGA-EAAKRAITMIEKQIGGDQVAAIIIEPI 235 (456)
T ss_dssp ETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHH-HHHHHHHHHHHHHTCGGGEEEEEECSS
T ss_pred EecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHH-HHHHHHHHHHHHhhcCCceEEEEeccc
Confidence 4 22211 0 00011123 444444432211 1125777776633
Q ss_pred CCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 202 GNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 202 ~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
..-.|.+ .+.+-+++|.++|++||+++|.||+...+.-. +.. ... ..+|+ ..+ | -+++|.+ | .|
T Consensus 236 qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRt-G~~-~a~----e~~gv--~PD---i--vt~gK~l-g-gg 300 (456)
T 4atq_A 236 QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRT-GEW-FAV----DHEGV--VPD---I--ITMAKGI-A-GG 300 (456)
T ss_dssp BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSS-SGG----GGTTC--CCS---E--EEECGGG-G-TT
T ss_pred cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCc-ccc-ccc----cccCC--CCc---h--hhhhhcc-c-Cc
Confidence 3335654 56678999999999999999999999875221 111 111 12222 221 3 4678998 4 68
Q ss_pred ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
+.+|.++ +.+++.+.+..... .+++.++++..++.+.|+ .++ .+++.++.++.-+++.+.|+++
T Consensus 301 ~P~~av~---~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~~l 365 (456)
T 4atq_A 301 LPLSAIT---GRADLLDAVHPGGLGGTYGGNPVACAAALAAID-----------TME-QHDLNGRARHIEELALGKLREL 365 (456)
T ss_dssp SSCEEEE---EEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeE---ecHHHHhcccccCCCCCCCCChHHHHhhHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 47887777755442 578889999988888873 222 1234444455555555555432
Q ss_pred ----CC-----cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 360 ----RN-----VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 360 ----pg-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
+. +.-+... |+++-+.+..+... ....+-...+...+.++||++.++..++ +.+||...
T Consensus 366 ~~~~~~~~~~~v~~VRG~-Gl~~giel~~~~~~------~~~~~~~~~v~~~~~~~Gvl~~~~g~~~-----~~irl~Pp 433 (456)
T 4atq_A 366 AAELSAGGGSVVGDIRGR-GAMLAIELVQPGSK------EPNAELTKAVAAACLKEGVIILTCGTYG-----NVIRLLPP 433 (456)
T ss_dssp HHHCC-----CEEEEEEE-TTEEEEEEBCTTSC------CBCHHHHHHHHHHHHHTTEECEEECTTS-----CEEEECCC
T ss_pred HHhcccccCCceEEeeec-ceEEEEEEecCCCC------CcCHHHHHHHHHHHHHCCCEEEecCCCC-----CEEEEECC
Confidence 21 1111222 33444333222110 0000012234455678899998754332 36999987
Q ss_pred --CCcCcHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++++++++++|.++++.
T Consensus 434 L~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 434 LVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 6889999999999998864
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.48 E-value=2.3e-11 Score=120.42 Aligned_cols=299 Identities=9% Similarity=0.037 Sum_probs=173.6
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC----CCEEEEc-------------cCcee-------cCCCcc
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE----GDGVVLL-------------FHTTW-------KRQQIG 172 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~----gd~Vlvp-------------~g~~~-------~~~~~~ 172 (463)
-+|++ ..|++ .....++++|+|.++..++.+.+ ++ |+.|++| .|.++ ..+..+
T Consensus 123 ld~L~-~~G~~-~~~~~flVnGsTgg~lamilaa~-r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~ 199 (501)
T 3hl2_A 123 LDIIK-LAGVH-TVANCFVVPMATGMSLTLCFLTL-RHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR 199 (501)
T ss_dssp HHHHH-HTTCT-TCCEEEEESSCHHHHHHHHHHHH-HHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEE
T ss_pred HHHHH-HcCCC-CCCcEEEECcHHHHHHHHHHHHc-CcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccC
Confidence 34554 44876 33479999999988887777776 43 4999999 66666 245688
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
+|+ +.++++|++. +.+..+++++ .+.|-.+.+- ++++|+++|++||+++++|+||..... ....+..-
T Consensus 200 id~-e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~d---dI~eIaeIch~~gIpllVDeAhGah~~----~~~~lp~s 268 (501)
T 3hl2_A 200 TDL-KAVEAKVQEL---GPDCILCIHSTTSCFAPRVPD---RLEELAVICANYDIPHIVNNAYGVQSS----KCMHLIQQ 268 (501)
T ss_dssp ECH-HHHHHHHHHH---CGGGEEEEEEECSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTCTTCH----HHHHHHHH
T ss_pred CCH-HHHHHHHHhc---CCCcEEEEEecCCCCCCcccc---cHHHHHHHHHHcCCeEEEeCcchhhhh----hhhhhHHH
Confidence 999 9999999985 1133444444 4455333443 489999999999999999999976421 01111111
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
.-++ +. -.+++.|.+|++. ++ +..|.+.+ .++++++.+..... ...++.++......++.
T Consensus 269 A~~~----Gr--AD~vVqS~HK~ll-vp-IGG~ii~~--~d~e~l~~~~~~yP-Gr~S~Spsldl~~tLL~--------- 328 (501)
T 3hl2_A 269 GARV----GR--IDAFVQSLDKNFM-VP-VGGAIIAG--FNDSFIQEISKMYP-GRASASPSLDVLITLLS--------- 328 (501)
T ss_dssp HHHH----SC--CCEEEEEHHHHHC-CC-SSCEEEEE--SCHHHHHHHHHTSC-SCBCSHHHHHHHHHHHH---------
T ss_pred HHhc----CC--CcEEEecccccce-ee-cCceEEEe--CCHHHHHHHHHhCC-CCCCCcHHHHHHHHHHH---------
Confidence 1122 21 1268899999973 33 33455544 47777777755443 11223333333333331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSC---RNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 407 (463)
--.+-.+++.++..++.++|.+.|+++ -|-++.. +.....+-+.+.-... ....+...+-..|..++
T Consensus 329 -lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~ 399 (501)
T 3hl2_A 329 -LGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQ 399 (501)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcC
Confidence 012223455566666677777777664 2444443 3333444433431100 00112333444455556
Q ss_pred eE----eeCCC----------CCCCCC---CCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhcccc
Q 041151 408 IS----TVPGS----------GFGQKE---GIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYEDYR 458 (463)
Q Consensus 408 I~----v~pg~----------~f~~~~---~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~ 458 (463)
|. |.+|. .||... ...|+=++.+ .+.+|++.++++|.+++.+++++..+..
T Consensus 400 vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 469 (501)
T 3hl2_A 400 VSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKES 469 (501)
T ss_dssp CCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 52 34555 666521 1357888887 8899999999999999999987765544
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.44 E-value=5.7e-11 Score=118.92 Aligned_cols=302 Identities=9% Similarity=0.046 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC---CCCEEEEc-------------cCcee------
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG---EGDGVVLL-------------FHTTW------ 166 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---~gd~Vlvp-------------~g~~~------ 166 (463)
...+.+.+..++.+..|++ +....++++|+|.++..++.+.++. +++.|++| .|..+
T Consensus 96 ~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~ 174 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 174 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEee
Confidence 3467777777777777865 2346788888885555555555421 38999998 56654
Q ss_pred -cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECC-CCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 -KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINP-GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 -~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p-~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
..+...+|+ +.|+++|++... ..+++++.+| ++.+|.+-+ +++|+++|++||+++++|++|..... .
T Consensus 175 ~~~~~~~id~-~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~----~ 243 (450)
T 3bc8_A 175 LEGDELRTDL-KAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSS----K 243 (450)
T ss_dssp EETTEEECCH-HHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH----H
T ss_pred ecCccCCcCH-HHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhh----h
Confidence 245688999 999999987521 2456666666 444456644 88999999999999999999985311 0
Q ss_pred ccchH-HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCC
Q 041151 245 FVSSK-KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNP 323 (463)
Q Consensus 245 ~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~ 323 (463)
...+. .... .+ .. ..++.|.+|++..+.| .+++.+ .+++.++.+..... ...++.++...+..++.
T Consensus 244 ~~~l~~~a~~-~~---~A---D~~v~S~HK~l~a~~~--~~~l~~--rd~~~~~~~~~~~~-g~~s~SpsL~l~~~l~~- 310 (450)
T 3bc8_A 244 CMHLIQQGAR-VG---RI---DAFVQSLDKNFMVPVG--GAIIAG--FNEPFIQDISKMYP-GRASASPSLDVLITLLS- 310 (450)
T ss_dssp HHHHHHHHHH-HS---CC---CEEEEEHHHHHSCCSS--CEEEEE--SCHHHHHHHHHHSC-SCBCSHHHHHHHHHHHH-
T ss_pred hHhHHHHHhc-cc---CC---CEEEECCccCCCchhc--cEEEEe--cCHHHHHHHHHHhh-cCCcccHHHHHHHHHHH-
Confidence 11111 1110 00 11 2577999999843334 677765 46777666644332 11223444333333321
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCc---eeEEeeecc-CChhhHHHHhhcCCCChH
Q 041151 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEG---AMYSFPQIR-LPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g---~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 396 (463)
...+..++..++..++.+++.+.|++++ |..+...+. ...+. ++ +.... ..|..
T Consensus 311 ---------~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~--l~~~~~~~--------~~D~t 371 (450)
T 3bc8_A 311 ---------LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMT--LKTIDGHH--------DKAVT 371 (450)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEE--CTTTSSSS--------SCHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceee--cccccccc--------cCCCc
Confidence 0111123333344555667777776665 666654321 11121 11 00000 00122
Q ss_pred HHHHHHHHhcC---eEeeC--------C---CCCCCC---CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 397 FYCLRLLEATG---ISTVP--------G---SGFGQK---EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 397 ~~~~~ll~~~g---I~v~p--------g---~~f~~~---~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
.+... +...| .-+.+ | ..|+.. ....++=+.++ .+++++++++++|+++.++++++..
T Consensus 372 kl~i~-~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~~~ 448 (450)
T 3bc8_A 372 QLGSM-LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQT 448 (450)
T ss_dssp HHHHH-HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEEE-ecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33322 33333 33321 1 122221 12345555555 8899999999999999888877654
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.39 E-value=9.5e-13 Score=142.72 Aligned_cols=214 Identities=13% Similarity=0.104 Sum_probs=130.2
Q ss_pred ceeEEEEECC-CCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 192 TVRAMVIINP-GNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 192 ~~~~i~l~~p-~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
++.+|++..- ++..|... +++.+++|.++|++||+++|+||++..+... +... .. ..+|+ ..+ | .
T Consensus 594 ~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRt-G~~f-a~----e~~gv--~PD---i--i 660 (831)
T 4a0g_A 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRL-GVET-TT----ELLGC--KPD---I--A 660 (831)
T ss_dssp EEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTT-SBSS-TH----HHHSS--CCS---E--E
T ss_pred cEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccC-CCch-hh----HhcCC--CCc---E--E
Confidence 5666666543 67777654 7888999999999999999999999876442 2221 11 12222 222 2 3
Q ss_pred cCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 270 TVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 270 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
++||.+ + .| +++|+++ +++++++.+... ...+++.+++.+.++.+.|+ .+++ +.+
T Consensus 661 tlsK~L-~-gG~~Plgav~---~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~-----------~i~~-~~l 723 (831)
T 4a0g_A 661 CFAKLL-T-GGMVPLAVTL---ATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ-----------WFKD-PET 723 (831)
T ss_dssp EECGGG-G-TTSSCCEEEE---ECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHH-----------HHHC-TTT
T ss_pred EEeccc-c-cCccCcEEEE---ECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHH-----------HHHh-hHH
Confidence 799999 5 47 8999999 488888887542 22467778888888877763 1111 011
Q ss_pred HHHHHHH--------HHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC-ChHHHHHHHHHhcCeEeeC
Q 041151 342 LESLRRR--------ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV-PDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 342 ~~~~~~~--------~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gI~v~p 412 (463)
.++.+++ .+.+.+.+.+.|.+..+...|.++.+ .+.-+.. ..+.. .....+...|.++||+++|
T Consensus 724 ~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~~------~~~~~~~~a~~~~~~l~e~Gv~v~p 796 (831)
T 4a0g_A 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFAL-ELKADAS------NSGYASLYAKSLLIMLREDGIFTRP 796 (831)
T ss_dssp CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEE-EEC---------------CHHHHHHHHHHHHTTEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEE-EEecCcc------ccccchHHHHHHHHHHHHCCcEEEe
Confidence 1111111 11344455556665555555544443 3321100 00000 1122344556788999987
Q ss_pred CCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+. +.+|++.. .++++|++++++|.++++++
T Consensus 797 ~g--------~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 797 LG--------NVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp BT--------TEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 42 37999965 89999999999999887643
No 237
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=76.16 E-value=13 Score=37.44 Aligned_cols=105 Identities=8% Similarity=0.101 Sum_probs=64.8
Q ss_pred cCCCCCCCcEEEcCCcHHHHHHHHHHHhc----CCCCEEEEc------------cCcee-cCCCcccChHHHHHHHHHHH
Q 041151 124 DGYPSDPELIFLTDGASKGVMQTLNCVIR----GEGDGVVLL------------FHTTW-KRQQIGVLIINDLQQSVAQA 186 (463)
Q Consensus 124 ~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~~gd~Vlvp------------~g~~~-~~~~~~~d~~~~l~~~l~~~ 186 (463)
|.+.++++.|.|+.++..++...++.|.+ .....+.+| .|..+ ....+ +.+ +.+++.|...
T Consensus 100 Y~L~v~~~~i~I~a~~~~G~~~g~qTl~QL~~~~~~~~~~ip~~~I~D~P~f~~RG~mlD~aR~f-~~~-~~ik~~id~m 177 (507)
T 1now_A 100 YTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHY-LPV-KIILKTLDAM 177 (507)
T ss_dssp EEEEECSSEEEEEESSHHHHHHHHHHHHHHCEECTTSCEEEEEEEEEECCSCSEEEEEEESSSSC-CCH-HHHHHHHHHH
T ss_pred eEEEEcCCeEEEEECCHHHHHHHHHHHHHHHhhccCceEEeccEEEEecCccceeeeeeccCCCC-CCH-HHHHHHHHHH
Confidence 44457778899998888888777777642 111223344 33333 33334 556 8888877754
Q ss_pred HhcCCceeEEEEE-CCC-------CC---------CccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 187 RSKGITVRAMVII-NPG-------NP---------TGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 187 ~~~~~~~~~i~l~-~p~-------NP---------tG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
..-+-++=.+.++ +.+ .| .|..+|.+|+++|++.|+++++-||-
T Consensus 178 a~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 238 (507)
T 1now_A 178 AFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLP 238 (507)
T ss_dssp HHTTCCEEEEECCCSSCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCcEEEEeeccCccceeeccchhhhhcccCcCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3322233333333 221 12 15679999999999999999999984
No 238
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=69.36 E-value=24 Score=35.54 Aligned_cols=105 Identities=9% Similarity=0.182 Sum_probs=63.6
Q ss_pred cCCCCCCCcEEEcCCcHHHHHHHHHHHhc----CCCCEEEEc------------cCcee-cCCCcccChHHHHHHHHHHH
Q 041151 124 DGYPSDPELIFLTDGASKGVMQTLNCVIR----GEGDGVVLL------------FHTTW-KRQQIGVLIINDLQQSVAQA 186 (463)
Q Consensus 124 ~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~~gd~Vlvp------------~g~~~-~~~~~~~d~~~~l~~~l~~~ 186 (463)
|.+.++++.|.|+.++..++...++.|.+ .....+.+| .|.-+ ....+ +.+ +.+++.|...
T Consensus 94 Y~L~v~~~~i~I~a~~~~G~~~g~qTl~QL~~~~~~~~~~ip~~~I~D~P~f~~RG~mlD~aR~f-~~~-~~ik~~id~m 171 (507)
T 2gjx_A 94 YTLTINDDQCLLLSETVWGALRGLETFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHY-LPL-SSILDTLDVM 171 (507)
T ss_dssp EEEEESSSCEEEEESSHHHHHHHHHHHHHHEEECTTCCEEEECEEEEECCSCSEEEEEEETTTSC-CCH-HHHHHHHHHH
T ss_pred eEEEEeCCeEEEEECCHHHHHHHHHHHHHHhhhccCCceeeccEEEeecCCcceeeeeeccCCCC-CCH-HHHHHHHHHH
Confidence 34446777899998888888777777642 111223344 33333 23333 346 8888877654
Q ss_pred HhcCCceeEEEEE-C----------C-------CCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 187 RSKGITVRAMVII-N----------P-------GNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 187 ~~~~~~~~~i~l~-~----------p-------~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
..-+-++=.+.++ + | ..|.+..+|.+|+++|++.|+++++-||-
T Consensus 172 A~~KlN~lh~HltDdq~wr~ei~~~P~Lt~~Ga~~~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 172 AYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp HHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCceEEEEEecccCeeeeccccchhhhccccCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3222222222332 2 1 12336679999999999999999999984
No 239
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=67.55 E-value=22 Score=35.88 Aligned_cols=107 Identities=10% Similarity=0.180 Sum_probs=65.4
Q ss_pred HhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CC---------CCEEEEc------------cCcee-cCCCcccChHH
Q 041151 122 RRDGYPSDPELIFLTDGASKGVMQTLNCVIR--GE---------GDGVVLL------------FHTTW-KRQQIGVLIIN 177 (463)
Q Consensus 122 ~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~---------gd~Vlvp------------~g~~~-~~~~~~~d~~~ 177 (463)
+-|.+.++++.|.|+.++..++...++.|.+ .. |....+| .|.-+ ....+ +.+ +
T Consensus 122 E~Y~L~v~~~~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~~g~~~~lp~~~I~D~Prf~~RG~mLDvsR~f-~~~-~ 199 (525)
T 3gh5_A 122 EGYDLITTSNQVTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVARHF-FTV-D 199 (525)
T ss_dssp TCEEEEECSSEEEEEESSHHHHHHHHHHHHHHSCTTTTCSSCCCSCCCEEEEEEEEECCSCSEEEEEEECSSSC-CCH-H
T ss_pred CceEEEEeCCEEEEEECCHHHHHHHHHHHHHHHhhhccccccccCcceeccceEEeecCCcceeccccCCCCCC-CCH-H
Confidence 3345567888999999888888877777652 11 2122233 33333 22333 456 7
Q ss_pred HHHHHHHHHHhcCCceeEEEEE-C-------CCC--------------CCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 178 DLQQSVAQARSKGITVRAMVII-N-------PGN--------------PTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~-~-------p~N--------------PtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.+++.|+....-+-++=.+.++ + +.. +.|..+|.+|+++|++.|+++++-||-
T Consensus 200 ~ik~~id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~Ga~~~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP 274 (525)
T 3gh5_A 200 EVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIP 274 (525)
T ss_dssp HHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHcCCcEEEEEeccCCccccccccchhhhhccCccccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 7888776543222233333333 2 111 135679999999999999999999884
No 240
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=60.98 E-value=23 Score=35.68 Aligned_cols=105 Identities=10% Similarity=0.196 Sum_probs=63.8
Q ss_pred cCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CCC--------CEEEEc------------cCcee-cCCCcccChHHHHH
Q 041151 124 DGYPSDPELIFLTDGASKGVMQTLNCVIR--GEG--------DGVVLL------------FHTTW-KRQQIGVLIINDLQ 180 (463)
Q Consensus 124 ~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~g--------d~Vlvp------------~g~~~-~~~~~~~d~~~~l~ 180 (463)
|.+.++++.|.|+.++..++...++.|.+ ..+ ....+| .|..+ ....+ +.+ +.++
T Consensus 100 Y~L~v~~~~i~I~a~~~~G~~~g~qTL~Ql~~~~~~~~~~~~~~~~lp~~~I~D~Prf~~RG~mLD~aR~f-~~~-~~ik 177 (512)
T 1jak_A 100 YRLDSGPAGVTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSRHF-FGV-DEVK 177 (512)
T ss_dssp EEEEEETTEEEEEESSHHHHHHHHHHHHHHSCGGGGCSSCCCCCCEECCEEEEECCSCSEEEEEEECSSSC-CCH-HHHH
T ss_pred eEEEEeCCEEEEEEcCHHHHHHHHHHHHHHhhhhhcccccccCcccccceEEeecCCCCccceeeccCCCC-CCH-HHHH
Confidence 44456777899988887777777776642 111 112233 33333 22333 456 8888
Q ss_pred HHHHHHHhcCCceeEEEEE-CC-------CCC--------------CccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 181 QSVAQARSKGITVRAMVII-NP-------GNP--------------TGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 181 ~~l~~~~~~~~~~~~i~l~-~p-------~NP--------------tG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
+.|.....-+-++=.+.++ +. ..| .|..+|.+++++|++.|+++++-||-
T Consensus 178 ~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 178 RYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp HHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 8877643322233333443 21 112 25789999999999999999999984
No 241
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=58.31 E-value=15 Score=35.00 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEE-EcC--------CcHHHHHHHHHHHhc--CCCCEEEEc---cCceec-CCCcc
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIF-LTD--------GASKGVMQTLNCVIR--GEGDGVVLL---FHTTWK-RQQIG 172 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~-~t~--------G~~~al~~~~~~l~~--~~gd~Vlvp---~g~~~~-~~~~~ 172 (463)
|...=-+.++++|.+.+|+ +.++|. ++. -+.+.|..++..|+. ++||.+++- +|..+. .++..
T Consensus 72 g~vnDA~~m~~~L~~~~Gf--~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~pgD~llfYFSGHG~q~~d~~gdE 149 (350)
T 4f6o_A 72 GCINDAHNIFNFLTNGYGY--SSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDE 149 (350)
T ss_dssp SHHHHHHHHHHHHHHHSCC--CGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCCTTCEEEEEEESCEEEC-------
T ss_pred CHHHHHHHHHHHHHHhcCC--CccceeeecccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCCceeccCCCCCc
Confidence 3344445678888776674 455654 454 257778888887763 489988886 666652 11111
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH--HhhhCCeEEEeccccccccc
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR--FCYQENLVLLGDEVYQQNIY 239 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~--~a~~~~~~vi~Deay~~~~~ 239 (463)
.|- .-..|+-.. .++.| .++.+++.+++. +.+...+.+|.|+.|+....
T Consensus 150 ~dG----------------~De~lvP~D-~~~~g-~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~l 200 (350)
T 4f6o_A 150 EDG----------------MDDVIYPVD-FETQG-PIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVL 200 (350)
T ss_dssp --------------------CEEECCTT-HHHHC-CEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTT
T ss_pred ccC----------------CceEEEecc-CCcCC-cccHHHHHHHHHhhcCCCCeEEEEEccCCCCccc
Confidence 110 112222111 11224 345577777543 22345788999999987654
No 242
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=56.54 E-value=45 Score=33.81 Aligned_cols=105 Identities=13% Similarity=0.288 Sum_probs=63.6
Q ss_pred hcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--C----------CCCEEEEc------------cCcee-cCCCcccChHH
Q 041151 123 RDGYPSDPELIFLTDGASKGVMQTLNCVIR--G----------EGDGVVLL------------FHTTW-KRQQIGVLIIN 177 (463)
Q Consensus 123 ~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~----------~gd~Vlvp------------~g~~~-~~~~~~~d~~~ 177 (463)
-|.+.+ ++.|.|+.++..++...++.|.+ . .|....+| .|.-+ ....| +.+ +
T Consensus 79 ~Y~L~v-~~~i~I~a~~~~G~f~glqTL~QLl~~~~~~~~~~~~~~~~~ip~~~I~D~Prf~~RG~mLDvsRhf-~~~-~ 155 (543)
T 3rcn_A 79 AYRLEV-SDAVVISAGGAAGAFYGAQTLLQLLGPAALRQAPVVAVEGWSVPRVSVEDKPRFGYRGTMLDVARHF-MPK-D 155 (543)
T ss_dssp CEEEEE-SSSEEEEESSHHHHHHHHHHHHHHHCGGGGSSSCCSCCSCEEEEEEEEEECCSCSEEEEEEETTTSC-CCH-H
T ss_pred ceEEEE-CCeEEEEECCHHHHHHHHHHHHHHHhhhcccccccccCcceeccCEEEEecCCCCccccccccCCCc-cCH-H
Confidence 345557 78999998888877777776641 1 13233444 33333 22332 445 7
Q ss_pred HHHHHHHHHHhcCCceeEEEEE-C-------C--------------------------CCCCccCCCHHHHHHHHHHhhh
Q 041151 178 DLQQSVAQARSKGITVRAMVII-N-------P--------------------------GNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~-~-------p--------------------------~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.+++.|.....-+-++=.+.++ + + ..|.|..+|.+|+++|++.|++
T Consensus 156 ~ik~~ID~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~~~~g~YT~~di~eIv~YA~~ 235 (543)
T 3rcn_A 156 NVLRFIEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAAD 235 (543)
T ss_dssp HHHHHHHHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCCCEECCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCCccCCCcCHHHHHHHHHHHHH
Confidence 7777776542222222222322 1 1 1233678999999999999999
Q ss_pred CCeEEEe
Q 041151 224 ENLVLLG 230 (463)
Q Consensus 224 ~~~~vi~ 230 (463)
+++-||=
T Consensus 236 rgI~VIP 242 (543)
T 3rcn_A 236 RHITVIP 242 (543)
T ss_dssp TTCEEEE
T ss_pred cCCEEee
Confidence 9999984
No 243
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=49.91 E-value=1.3e+02 Score=30.64 Aligned_cols=97 Identities=12% Similarity=0.202 Sum_probs=59.6
Q ss_pred cEEEcCCcHHHHHHHHHHHhc----CC--CCEEEEc------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCc
Q 041151 132 LIFLTDGASKGVMQTLNCVIR----GE--GDGVVLL------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 132 ~i~~t~G~~~al~~~~~~l~~----~~--gd~Vlvp------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~ 192 (463)
.|.++.++..++...++.|.+ +. +....+| .|.-+ ....+ +.+ +.+++.|.....-+-+
T Consensus 142 ~i~I~a~~~~G~~~glqTL~QLl~~~~~~~~~~~~p~~~I~D~Prf~~RG~mLDvsR~f-~~~-~~ik~~id~mA~~KlN 219 (572)
T 3ozo_A 142 NATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYRGILLDTARNY-YSI-ESIKRTIEAMAAVKLN 219 (572)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTEEEETTTTEEEEESSEEEEECCSCSEEEEEEECSSSC-CCH-HHHHHHHHHHHHTTCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHHhhccccccccccCceeEEecCCCccccceeccCCCC-CCH-HHHHHHHHHHHHcCCc
Confidence 477888888888888887752 11 1223333 33333 33333 456 8888877754332223
Q ss_pred eeEEEEE-CCC-------CC---------CccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 193 VRAMVII-NPG-------NP---------TGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 193 ~~~i~l~-~p~-------NP---------tG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
+=.+.++ +.+ .| .|..+|.+|+++|++.|+++++-||-
T Consensus 220 ~lH~HltDdqgwrlei~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIP 274 (572)
T 3ozo_A 220 TFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLP 274 (572)
T ss_dssp EEEEECCCSSCCCBCCSSSHHHHHHHSSSSSSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEeecCcCceeccccCcchhccCCcCCCCCcCHHHHHHHHHHHHHhCCceee
Confidence 3333443 221 11 35689999999999999999998883
No 244
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=49.82 E-value=46 Score=35.70 Aligned_cols=105 Identities=9% Similarity=0.084 Sum_probs=62.3
Q ss_pred cCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CCCCEEEEc------------cCcee-cCCCcccChHHHHHHHHHHHHh
Q 041151 124 DGYPSDPELIFLTDGASKGVMQTLNCVIR--GEGDGVVLL------------FHTTW-KRQQIGVLIINDLQQSVAQARS 188 (463)
Q Consensus 124 ~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlvp------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~ 188 (463)
|.+.++++.|.|+.++..++...++.|.+ ..++...+| .|..+ ....+ +.. +.+++.|.....
T Consensus 262 Y~L~v~~~~i~I~a~~~~G~fyglqTL~QLl~~~~~~~ip~~~I~D~Prf~~RG~mLDvsR~f-~~~-~~ik~~Id~mA~ 339 (858)
T 1c7s_A 262 YELKIGKKEAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRGIFLDVARNF-HKK-DAVLRLLDQMAA 339 (858)
T ss_dssp EEEEECSSCEEEEESSHHHHHHHHHHHHHHSCTTSCCEEEEEEEEECCSCSEEEEEEECSSSC-CCH-HHHHHHHHHHHH
T ss_pred eEEEEeCCeEEEEEecccceeHHHHHHHHHhhhcCCccccceEEEeCCCcceeeeeecCCCCC-CCH-HHHHHHHHHHHH
Confidence 33446777899988887777777776642 222210222 33333 33333 566 778877765422
Q ss_pred cCCceeEEEEE-C-------CCC-----------------------------CCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 189 KGITVRAMVII-N-------PGN-----------------------------PTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 189 ~~~~~~~i~l~-~-------p~N-----------------------------PtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
-+-++=.+.++ + +.. |.|..+|.+|+++|++.|+++++-||=
T Consensus 340 ~KlN~lh~HltDdqgwriei~~yP~Lt~~Ga~r~~~~~~~~~~~p~~g~~~~~~~g~YT~~direIv~YA~~rgI~VIP 418 (858)
T 1c7s_A 340 YKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIP 418 (858)
T ss_dssp TTCCEEEEECEETTEECBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTCCSSCEECCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred hCCcEEEEEeccCccccccccCCchhhhccccccccccccccccccccCCCCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22222222332 1 111 235689999999999999999999884
No 245
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=45.98 E-value=48 Score=34.26 Aligned_cols=106 Identities=8% Similarity=0.067 Sum_probs=62.0
Q ss_pred cCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CCCC-EEEE-c------cCcee-cCCCcccChHHHHHHHHHHHHhcCCc
Q 041151 124 DGYPSDPELIFLTDGASKGVMQTLNCVIR--GEGD-GVVL-L------FHTTW-KRQQIGVLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 124 ~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd-~Vlv-p------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~ 192 (463)
|.+.++++.|.|+.++..++...++.|.+ ..++ .+.+ + .|.-+ ....--+.+ +.+.+.+.....-+-+
T Consensus 39 Y~L~i~~~~i~I~a~~~~G~~~glqTL~QL~~~~~~~~~I~D~P~f~~RG~mlD~sR~~f~~~-~~ik~~id~ma~~KlN 117 (627)
T 2epl_X 39 IKVEGRQGYYQVSYKQPHQLYRALALLSAALRSGQDEVQIEEEAAYEDLAYMADCSRNAVLNL-SSAKKMIEVLALMGYS 117 (627)
T ss_dssp EEEEEETTEEEEEESSTTHHHHHHHHHHHHHHTTCSSEEEEECCSCSEEEEEEECSSSCCBCH-HHHHHHHHHHHHHTCC
T ss_pred EEEEEeCCEEEEEECCHHHHHHHHHHHHHHhhcCCCceEEEeCCCCCccceEEecCCCCCCCH-HHHHHHHHHHHHcCCc
Confidence 34446778899987766666655555431 1222 3333 2 34334 222213556 7777777654222223
Q ss_pred eeEEEEEC----CCCC----CccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 193 VRAMVIIN----PGNP----TGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 193 ~~~i~l~~----p~NP----tG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
+=.+.++. +..| .|..+|.+++++|++.|+++++-||-
T Consensus 118 ~lh~Hl~D~~ei~~~P~l~~~~~~YT~~di~eiv~yA~~rgI~VIP 163 (627)
T 2epl_X 118 TFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDMSFVP 163 (627)
T ss_dssp EEEEECSSCBCCTTCTTTTTTTTCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeecccccCCCcccCccCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 33333332 2333 36789999999999999999999984
No 246
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=39.47 E-value=43 Score=32.81 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccc
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
+.++++++++.|+++|+.||.|-++-...
T Consensus 63 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 91 (448)
T 1g94_A 63 NRAQFIDMVNRCSAAGVDIYVDTLINHMA 91 (448)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeecccc
Confidence 67899999999999999999999987653
No 247
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=38.93 E-value=66 Score=30.17 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=32.1
Q ss_pred CCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 201 PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 201 p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
-+||.|.....+++.++++.|+++|+.|++|--|++.
T Consensus 49 w~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~ 85 (332)
T 1hjs_A 49 WVNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDT 85 (332)
T ss_dssp CSSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSS
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 4778888889999999999999999999999766554
No 248
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=37.83 E-value=24 Score=34.78 Aligned_cols=29 Identities=21% Similarity=0.587 Sum_probs=25.7
Q ss_pred CCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 202 GNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 202 ~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
++|.|..+|.+++++|++.|+++++-||=
T Consensus 85 ~~~~~~~YT~~di~eIv~YA~~rgI~VIP 113 (442)
T 2yl5_A 85 DDPNGTALTQAEVTELIEYAKSKDIGLIP 113 (442)
T ss_dssp CCTTCSCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCeeee
Confidence 35667899999999999999999999984
No 249
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=35.44 E-value=1.1e+02 Score=27.72 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCC--cHHHHHHHHHHHhc--CCCCEEEEc---cCceec-CCCcccChHHHH
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDG--ASKGVMQTLNCVIR--GEGDGVVLL---FHTTWK-RQQIGVLIINDL 179 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G--~~~al~~~~~~l~~--~~gd~Vlvp---~g~~~~-~~~~~~d~~~~l 179 (463)
|...=-+.+++++. ++|++ .+++++. +.+.|..++..++. .+||.+++- +|...+ ..+...|-
T Consensus 28 ~~~nDa~~~~~~L~-~~Gf~----v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg---- 98 (285)
T 3bij_A 28 ACEADAEDMAAIAA-ERGFA----VTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSYSGHGGQVPDTSNDEPDG---- 98 (285)
T ss_dssp SHHHHHHHHHHHHH-HTTCE----EEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEEESCEEEEECTTSCCTTC----
T ss_pred CCHHHHHHHHHHHH-HcCCc----eEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEEcCCcccccCCCCCccCC----
Confidence 33344445666764 45653 3334432 56677777776652 689988886 666552 22221111
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh-hCCeEEEeccccccc
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY-QENLVLLGDEVYQQN 237 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~-~~~~~vi~Deay~~~ 237 (463)
....++ |.. |. +..+++.++++-+. ..++++|.|..|+..
T Consensus 99 ------------~~~~l~---p~D--~~-i~~~~l~~~l~~l~~~~~~~vilD~C~SG~ 139 (285)
T 3bij_A 99 ------------VDETWC---LFD--GE-LIDDELYALLGKFAAGVRVLVFSDSCHSGT 139 (285)
T ss_dssp ------------EEEEEE---CSS--SE-EEHHHHHHHHTTSCSSCEEEEEEECCCCCC
T ss_pred ------------CcceEE---ecC--CC-ccHHHHHHHHHhccCCCeEEEEEecCCCCc
Confidence 112222 221 22 34567777765444 247899999999853
No 250
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=34.09 E-value=23 Score=34.81 Aligned_cols=28 Identities=18% Similarity=0.585 Sum_probs=25.1
Q ss_pred CCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 203 NPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 203 NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
+|.|..+|.+++++|++.|+++++-||=
T Consensus 83 ~~~~~~YT~~di~eIv~YA~~rgI~VIP 110 (434)
T 2yl6_A 83 DPNGNHLTESQMTDLINYAKDKGIGLIP 110 (434)
T ss_dssp CTTCSCEEHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3567899999999999999999999984
No 251
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=31.01 E-value=1.3e+02 Score=28.12 Aligned_cols=37 Identities=14% Similarity=0.005 Sum_probs=31.9
Q ss_pred CCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 201 PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 201 p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
-+||.+...+.+...++++.|+++|+.|++|--|++.
T Consensus 49 ~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~hysd~ 85 (334)
T 1fob_A 49 WVNPSDGSYDLDYNLELAKRVKAAGMSLYLDLHLSDT 85 (334)
T ss_dssp CSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEECCSSS
T ss_pred EECCCCCccCHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 3778888889999999999999999999999766554
No 252
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=28.87 E-value=3.1e+02 Score=24.35 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred CCCCcEEEcCCcHHHHH-HHHHHHhcCCCCEEEEc----------------cCcee-cCCCcccChHHHHHHHHHHHHhc
Q 041151 128 SDPELIFLTDGASKGVM-QTLNCVIRGEGDGVVLL----------------FHTTW-KRQQIGVLIINDLQQSVAQARSK 189 (463)
Q Consensus 128 ~~~~~i~~t~G~~~al~-~~~~~l~~~~gd~Vlvp----------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~ 189 (463)
++-..++||.|+ .+|- .+...|. +.|-.|++- .|.+. ....+--|. +.+++.++...++
T Consensus 7 L~gKvalVTGas-~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~-~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSA-RGLGFAYAEGLA-AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDE-LAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCS-SHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCH-HHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCH-HHHHHHHHHHHHH
Confidence 333345555554 4565 4445666 788777764 23233 112222344 5566655554444
Q ss_pred CCceeEEEEECC-CCCCcc--CCCHHHHHHHHHH
Q 041151 190 GITVRAMVIINP-GNPTGQ--CLSEANLREILRF 220 (463)
Q Consensus 190 ~~~~~~i~l~~p-~NPtG~--~~s~~~l~~l~~~ 220 (463)
.++...++ +|. .++.+. -++.++++++.++
T Consensus 84 ~G~iDiLV-NNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 84 GIHVDILI-NNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp TCCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCCcEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 33455443 332 222221 2455666666553
No 253
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=28.24 E-value=35 Score=33.63 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
+++++++|++.|+++|+.||.|-++-..
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 102 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAVINHM 102 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcC
Confidence 6899999999999999999999998765
No 254
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=26.20 E-value=96 Score=25.29 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=38.9
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH-HHHHHH-HHhhhCCe-EEEecccccc
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA-NLREIL-RFCYQENL-VLLGDEVYQQ 236 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~-~l~~l~-~~a~~~~~-~vi~Deay~~ 236 (463)
...+. +.|.+.+++. ++..|++-.|-|..|..-... +.+..+ .++++.++ ++++||.|+.
T Consensus 40 ~~~~~-~~l~~li~~~-----~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts 102 (150)
T 1vhx_A 40 GDYGL-SRLSELIKDY-----TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTT 102 (150)
T ss_dssp TBCCH-HHHHHHHTTS-----EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCH
T ss_pred hHHHH-HHHHHHHHHc-----CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCH
Confidence 55677 9999999886 899999999977766652211 223444 33344454 4556887753
No 255
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=25.22 E-value=3.4e+02 Score=23.62 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH
Q 041151 105 DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV 150 (463)
Q Consensus 105 ~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 150 (463)
+..+.....+.|.+++.......+++++|+++.=++.+...+..++
T Consensus 106 d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~ 151 (246)
T 4f21_A 106 DVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAI 151 (246)
T ss_dssp CCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHH
Confidence 4556777777777776543333478899997654444444433334
No 256
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=24.79 E-value=97 Score=29.54 Aligned_cols=109 Identities=11% Similarity=0.115 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEE-EcC----------CcHHHHHHHHHHHhc--CCCCEEEEc---cCceecCCCccc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIF-LTD----------GASKGVMQTLNCVIR--GEGDGVVLL---FHTTWKRQQIGV 173 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~-~t~----------G~~~al~~~~~~l~~--~~gd~Vlvp---~g~~~~~~~~~~ 173 (463)
..=-+.+++++. .+|+ +.++|. ++. -+.+.|...+..|+. ++||.+++- +|...+..+...
T Consensus 113 vnDA~~m~~~L~-~~GF--~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~a~pgD~l~fyFSGHG~q~~d~~de~ 189 (367)
T 4af8_A 113 CNDVKQMLATLQ-KRGL--PINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRGDSD 189 (367)
T ss_dssp HHHHHHHHHHHH-HTTC--CCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHTCCTTCEEEEEEESCEEEECCC----
T ss_pred HHHHHHHHHHHH-HcCC--CchheEEecccccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCCcCccCCCCCCC
Confidence 333445777775 4564 455544 443 256777777777652 589988886 666653221100
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHH-HHHhh-hCCeEEEeccccccccc
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI-LRFCY-QENLVLLGDEVYQQNIY 239 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l-~~~a~-~~~~~vi~Deay~~~~~ 239 (463)
| | --..|+-.. .++.|. ++.+++.++ ++-.. ..++.+|.|+.|+....
T Consensus 190 d---------------g-~De~LvP~D-~~~~g~-I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt~~ 239 (367)
T 4af8_A 190 E---------------K-YDQCIAPVD-FQKSGC-IVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIM 239 (367)
T ss_dssp ----------------C-CEEEECCTT-HHHHCC-EEHHHHHHHHTTTCCTTCEEEEEEECTTCCCCT
T ss_pred C---------------C-cceEEEeec-CCcCCC-ccHHHHHHHHHHhccCCCEEEEEEeCCCCCccc
Confidence 0 0 112222111 122343 455677666 33333 35789999999987554
No 257
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=24.69 E-value=3.8e+02 Score=24.02 Aligned_cols=89 Identities=10% Similarity=0.165 Sum_probs=41.8
Q ss_pred CCCcEEEcCCcHHHHH-HHHHHHhcCCCCEEEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCce
Q 041151 129 DPELIFLTDGASKGVM-QTLNCVIRGEGDGVVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITV 193 (463)
Q Consensus 129 ~~~~i~~t~G~~~al~-~~~~~l~~~~gd~Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~ 193 (463)
+-.-++||.| +.+|- .+...|. ..|-.|++. .|.+. ....+--|. +.+++.++...++-++.
T Consensus 28 ~gKvalVTGa-s~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~-~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGA-TSGIGLAAAKRFV-AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANL-AELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCH-HHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCc-CCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCH-HHHHHHHHHHHHHcCCC
Confidence 3334555555 44565 4555666 788777764 23222 111122244 55555555433322245
Q ss_pred eEEEEECCCCCCcc--CCCHHHHHHHHHH
Q 041151 194 RAMVIINPGNPTGQ--CLSEANLREILRF 220 (463)
Q Consensus 194 ~~i~l~~p~NPtG~--~~s~~~l~~l~~~ 220 (463)
..++-|.-.++.+- -++.++++++.++
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHH
Confidence 54433322222221 2466777776664
No 258
>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*
Probab=23.42 E-value=2.8e+02 Score=22.52 Aligned_cols=98 Identities=9% Similarity=0.070 Sum_probs=57.8
Q ss_pred eeEEEEECCCCCCccCCCHHHHHHHHHHhhhC-------CeEEEecccccccccCCCCCccchHHHHHhcCCCCCC--Cc
Q 041151 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQE-------NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK--EV 263 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~-------~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 263 (463)
.+++|++...-+ ++.+++..|++.++++ |+++..+..|....- .+...+..+...+..| .. +.
T Consensus 7 ~~liY~S~a~~~----~~~~~l~~Il~~a~~~N~~~gITG~Ll~~~g~F~Q~LE---G~~~~V~~l~~rI~~D-~RH~~v 78 (153)
T 2hfn_A 7 YRLIYSSQGIPN----LQPQDLKDILESSQRNNPANGITGLLCYSKPAFLQVLE---GECEQVNETYHRIVQD-ERHHSP 78 (153)
T ss_dssp EEEEEEEEECTT----CCHHHHHHHHHHHHHHHHHHTCEEEEEEETTEEEEEEE---EEHHHHHHHHHHHHTC-TTEEEE
T ss_pred EEEEEEEeecCC----CCHHHHHHHHHHHHHhhhhcCcEEEEEEeCCEEEEEee---CCHHHHHHHHHHHhcC-CCcCCe
Confidence 567777755444 4578999999999885 678888877766543 2222333333333111 11 22
Q ss_pred eEEEEecCCcccCCCCCceeEEEEecCCC----hhHHHHHHhhh
Q 041151 264 QLVSFHTVSKGYWGECGQRGGYFEMTNIP----PKTVDEIYKIA 303 (463)
Q Consensus 264 ~~i~~~S~SK~~~g~~G~R~G~~~~~~~~----~~~~~~l~~~~ 303 (463)
.++.......-.+ ++|.+|++-. + +.....+.++.
T Consensus 79 ~~l~~~~i~~R~F--~~W~M~~~~~---~~~~~~~~~~~~~~~~ 117 (153)
T 2hfn_A 79 QIIECMPIRRRNF--EVWSMQAITV---NDLSTEQVKTLVLKYS 117 (153)
T ss_dssp EEEEEEECSSCSS--TTCSCEEEEC---STTSCHHHHHHHHHTS
T ss_pred EEEEecccCCCcc--CCCcCeeecc---cccchhHHHHHHHhcc
Confidence 3445555555544 7999999984 4 44455555543
No 259
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=23.26 E-value=1.2e+02 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccc
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
.+.+.+.++++.|+++|+.|++|--|++..
T Consensus 86 ~d~~~~~~~a~~Ak~~GLkVlldfHysD~W 115 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGMKLLADFHYSDFW 115 (399)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECSSSSC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccCCcc
Confidence 578899999999999999999997776653
No 260
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=22.07 E-value=4e+02 Score=23.32 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=19.8
Q ss_pred CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 126 YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 126 ~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
..+....|+||.|+...=..+...|+ ..|-.|++
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~-~~G~~V~~ 58 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLA-SMGLKVWI 58 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHH-HTTCEEEE
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEE
Confidence 34554567777665543335555666 67877765
No 261
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=21.88 E-value=4.1e+02 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=15.5
Q ss_pred cEEEcCCcHHHHHH-HHHHHhcCCCCEEEEc
Q 041151 132 LIFLTDGASKGVMQ-TLNCVIRGEGDGVVLL 161 (463)
Q Consensus 132 ~i~~t~G~~~al~~-~~~~l~~~~gd~Vlvp 161 (463)
-++||. ++.+|-. +...|. ..|-.|++-
T Consensus 9 valVTG-as~GIG~aiA~~la-~~Ga~Vv~~ 37 (254)
T 4fn4_A 9 VVIVTG-AGSGIGRAIAKKFA-LNDSIVVAV 37 (254)
T ss_dssp EEEEET-TTSHHHHHHHHHHH-HTTCEEEEE
T ss_pred EEEEeC-CCCHHHHHHHHHHH-HcCCEEEEE
Confidence 445554 4445654 444565 677766653
No 262
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=21.53 E-value=62 Score=30.87 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.5
Q ss_pred ccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 206 GQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 206 G~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
+..+|.+|+++|++.|+++++-||-
T Consensus 89 ~g~YT~~di~eiv~YA~~rgI~VIP 113 (367)
T 1yht_A 89 KPFLSYRQLDDIKAYAKAKGIELIP 113 (367)
T ss_dssp CEEBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3579999999999999999999984
No 263
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2
Probab=21.17 E-value=2.4e+02 Score=22.61 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=56.8
Q ss_pred eeEEEEECCCCCCccCCCHHHHHHHHHHhhhC-------CeEEEecccccccccCCCCCccchHHHHHhcCCCCC-CCce
Q 041151 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQE-------NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS-KEVQ 264 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~-------~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 264 (463)
.+++|++...-+ ++.+++..|++.++++ |+++..+..|....- .+...+..+...+..|.- .+..
T Consensus 4 ~~l~Y~S~~~~~----~~~~~l~~Il~~a~~~N~~~~ITG~Ll~~~g~F~Q~LE---G~~~~V~~l~~rI~~D~RH~~v~ 76 (143)
T 1x0p_A 4 HRLIYLSCATDG----LSYPDLRDIMAKSEVNNLRDGITGMLCYGNGMFLQTLE---GDRQKVSETYARILKDPRHHSAE 76 (143)
T ss_dssp EEEEEEEEECTT----CCHHHHHHHHHHHHHHHHHHTCEEEEEEETTEEEEEEE---EEHHHHHHHHHHHHTCTTEEEEE
T ss_pred EEEEEEEeeCCC----CCHHHHHHHHHHHHHhhhhcCCEEEEEEcCCEEEEEec---CCHHHHHHHHHHHhcCCCcCCeE
Confidence 467777755443 3568999999999885 678888877766543 222233333333211001 1223
Q ss_pred EEEEecCCcccCCCCCceeEEEEecCCCh----hHHHHHHhhh
Q 041151 265 LVSFHTVSKGYWGECGQRGGYFEMTNIPP----KTVDEIYKIA 303 (463)
Q Consensus 265 ~i~~~S~SK~~~g~~G~R~G~~~~~~~~~----~~~~~l~~~~ 303 (463)
++......+-.+ ++|.+|++-. +. ...+.+.++.
T Consensus 77 ~l~~~~i~~R~F--~~W~M~~~~~---~~~~~~~~~~~~~~~~ 114 (143)
T 1x0p_A 77 IVEFKAIEERTF--INWSMRLVQL---GEMDSDTIRRLRLKYS 114 (143)
T ss_dssp EEEEEECSSCSS--CSCSCCEEEG---GGSCHHHHHHHHHHTC
T ss_pred EEEeeecccccc--CCCcceeecc---cccchHHHHHHHHhcc
Confidence 455555555544 7999999974 44 4444555543
No 264
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=21.13 E-value=1.4e+02 Score=28.93 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
+.++++++++.|+++|+.||.|-++-..
T Consensus 82 t~~~~~~lv~~~h~~Gi~vi~D~V~NH~ 109 (449)
T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYNHT 109 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcC
Confidence 6789999999999999999999987654
No 265
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=21.12 E-value=51 Score=34.66 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.++++++++.|+++|+-||.|-+|-..
T Consensus 254 ~~efk~lV~~~H~~Gi~VilDvV~NH~ 280 (714)
T 2ya0_A 254 IAEFKNLINEIHKRGMGAILDVVYNHT 280 (714)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcc
Confidence 699999999999999999999998754
No 266
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.00 E-value=3.2e+02 Score=21.75 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=24.3
Q ss_pred ceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 192 TVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
+..+| ++.|.. . .-+..+-..|.+.|-+|++.++..
T Consensus 96 ~i~lV-Int~~~-~--~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 96 SIDLV-INLPNN-N--TKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp SCCEE-EECCCC-C--GGGHHHHHHHHHHHHHTTCCEECS
T ss_pred CceEE-EECCCC-C--CcCCccHHHHHHHHHHhCCCeEcC
Confidence 56665 555532 1 223678888999999999988754
No 267
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=20.07 E-value=4.3e+02 Score=22.91 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=16.9
Q ss_pred CCCcEEEcCCcHHHHH-HHHHHHhcCCCCEEEEc
Q 041151 129 DPELIFLTDGASKGVM-QTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 129 ~~~~i~~t~G~~~al~-~~~~~l~~~~gd~Vlvp 161 (463)
....++||.|+. +|- .+...|. ..|-.|++-
T Consensus 11 ~~k~vlVTGas~-gIG~~ia~~l~-~~G~~V~~~ 42 (256)
T 3gaf_A 11 NDAVAIVTGAAA-GIGRAIAGTFA-KAGASVVVT 42 (256)
T ss_dssp TTCEEEECSCSS-HHHHHHHHHHH-HHTCEEEEE
T ss_pred CCCEEEEECCCC-HHHHHHHHHHH-HCCCEEEEE
Confidence 334555655544 444 4455565 677766653
Done!