Query 041152
Match_columns 135
No_of_seqs 144 out of 1040
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3000 ERG3 Sterol desaturase 100.0 3.8E-30 8.2E-35 198.4 10.4 130 2-134 122-253 (271)
2 KOG0874 Sphingolipid hydroxyla 99.9 4E-28 8.7E-33 179.1 -1.6 134 1-134 149-282 (287)
3 KOG0873 C-4 sterol methyl oxid 99.9 8.7E-27 1.9E-31 177.8 4.1 121 1-125 146-267 (283)
4 PLN02869 fatty aldehyde decarb 99.9 1.2E-23 2.7E-28 174.3 8.0 115 1-120 153-278 (620)
5 KOG0872 Sterol C5 desaturase [ 99.9 7.9E-24 1.7E-28 160.3 3.1 116 1-124 154-269 (312)
6 PF04116 FA_hydroxylase: Fatty 99.6 4.8E-16 1E-20 104.4 6.1 91 1-92 24-114 (114)
7 PLN02434 fatty acid hydroxylas 98.7 6.3E-08 1.4E-12 73.5 7.8 37 84-122 198-234 (237)
8 PRK07424 bifunctional sterol d 97.8 1.7E-05 3.6E-10 64.8 3.9 114 1-119 35-177 (406)
9 KOG0539 Sphingolipid fatty aci 96.6 0.0046 9.9E-08 46.3 5.1 35 84-120 201-235 (240)
10 PF10520 Kua-UEV1_localn: Kua- 96.1 0.0053 1.1E-07 44.9 2.8 59 60-120 100-161 (178)
11 PLN02601 beta-carotene hydroxy 93.2 0.098 2.1E-06 40.7 3.2 93 4-102 164-269 (303)
12 KOG3011 Ubiquitin-conjugating 78.2 3 6.5E-05 32.3 3.4 55 56-112 203-260 (293)
13 cd03510 Rhizobitoxine-FADS-lik 69.2 11 0.00024 27.1 4.5 77 2-95 72-162 (175)
14 KOG1600 Fatty acid desaturase 50.8 44 0.00094 26.8 5.1 37 84-121 122-163 (321)
15 cd03514 CrtR_beta-carotene-hyd 47.6 48 0.001 24.4 4.8 15 2-16 74-88 (207)
16 cd03505 Delta9-FADS-like The D 42.3 1.1E+02 0.0025 22.2 6.0 19 82-101 134-152 (178)
17 PLN02220 delta-9 acyl-lipid de 28.9 2E+02 0.0043 22.8 5.7 31 84-115 111-146 (299)
18 PF02208 Sorb: Sorbin homologo 27.5 24 0.00051 20.0 0.3 11 2-12 32-42 (47)
19 PF12431 CitT: Transcriptional 24.6 75 0.0016 16.1 1.8 24 106-129 4-28 (30)
20 PHA01740 putative single-stran 20.7 70 0.0015 22.6 1.6 29 106-134 123-151 (158)
No 1
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.97 E-value=3.8e-30 Score=198.43 Aligned_cols=130 Identities=33% Similarity=0.462 Sum_probs=114.4
Q ss_pred cchhhhhhcCCCCCCCcccccccChHHHHHHHHhhhhHHHhhcCccHHHHHHHHHHHHHHHHhhcCCcccCCcccccc--
Q 041152 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGNIFNLF-- 79 (135)
Q Consensus 2 ly~~~H~~HH~~~~~~~~~~~~~hp~e~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~~-- 79 (135)
+|+++|++||+..+|+++++.|.||+|.++...+ ..++..++|.++.++.++..+..+..+++|||++.| .+.+++
T Consensus 122 ~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~ 199 (271)
T COG3000 122 LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFL-GLLPLLLLGLSPVAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRY 199 (271)
T ss_pred HHHHHHHhhcCcccCCchhhhhcChHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCcccc-CCccccee
Confidence 5789999999999999999999999999999765 466778889999999999999999999999999977 443332
Q ss_pred cccCCchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCccccCCCCCcccccCC
Q 041152 80 FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPGGGFEARLKK 134 (135)
Q Consensus 80 ~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~~~Gl~~~~~~ 134 (135)
++++|++|++||++++.|+|||. .+++|||+|||+..++++.+.++|.+++..+
T Consensus 200 v~~~p~~H~lHH~~~~~~~Nyg~-~~~~WDrlFGT~~~~~~~~~~~~~~~~~~~~ 253 (271)
T COG3000 200 VFNTPRHHRLHHSKDPYDKNYGV-TLTFWDRLFGTYHPPDEREPDKIGVKAKIAL 253 (271)
T ss_pred eecCchHHHHhccCCCCCCcchh-hhHHHHHHcccCCCCcccCcccccccccccc
Confidence 57899999999999865799996 8999999999999999888878888877653
No 2
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.93 E-value=4e-28 Score=179.05 Aligned_cols=134 Identities=69% Similarity=1.250 Sum_probs=126.6
Q ss_pred CcchhhhhhcCCCCCCCcccccccChHHHHHHHHhhhhHHHhhcCccHHHHHHHHHHHHHHHHhhcCCcccCCccccccc
Q 041152 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGNIFNLFF 80 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~~~ 80 (135)
+|||.+|++||+--.|.+..++++||+|.++...++..++.++-|+++.+.++++.+.++-.+..|||+.+|..|+.+.|
T Consensus 149 ~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCGy~lP~dpfqm~F 228 (287)
T KOG0874|consen 149 FLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCGYWLPGDPFQMFF 228 (287)
T ss_pred HHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccccccCCCceeEec
Confidence 48999999999999999999999999999999998888998999999999999999999999999999999999988878
Q ss_pred ccCCchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCccccCCCCCcccccCC
Q 041152 81 QNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPGGGFEARLKK 134 (135)
Q Consensus 81 ~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~~~Gl~~~~~~ 134 (135)
-+.+++||+||...+.+.||++|+|++||+++||+.++..|++.+-|-+.|+.|
T Consensus 229 ~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~~~E~~~ekk~k~kn~K 282 (287)
T KOG0874|consen 229 PNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPYSLEKRLEKKFKAKNFK 282 (287)
T ss_pred cCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCchhccccccccccccch
Confidence 888999999999987789999999999999999999999999989999999887
No 3
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.93 E-value=8.7e-27 Score=177.81 Aligned_cols=121 Identities=31% Similarity=0.461 Sum_probs=106.7
Q ss_pred CcchhhhhhcCCCCCCCcccccccChHHHHHHHHhhhhHHHhhcCccHHHHHHHHHHHHHHHHhhcCCcccCCccccc-c
Q 041152 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGNIFNL-F 79 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~-~ 79 (135)
|+||.+||+||++++|.++++.+.||+|.++.++.+...+ ++++.|+.+.+++++++.+..+..||||++||++.+. +
T Consensus 146 ~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~~p-~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~p 224 (283)
T KOG0873|consen 146 WLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVMGP-ALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIP 224 (283)
T ss_pred HHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhhhhh-HHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCc
Confidence 6899999999999999999999999999999987654555 4555699999999999999999999999999988654 5
Q ss_pred cccCCchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCccccCCC
Q 041152 80 FQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPG 125 (135)
Q Consensus 80 ~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~~ 125 (135)
+.+++++||+||..+ .+||++ .|+.||||+||.+.+++.++..
T Consensus 225 fy~ga~~HD~HH~~f--~~n~~~-~f~~~D~i~GTd~~~~~~k~~~ 267 (283)
T KOG0873|consen 225 FYGGAEHHDYHHLVF--IGNFAS-VFGYLDRIHGTDSTYRALKELK 267 (283)
T ss_pred ccCCCcccchhhhhc--cccccc-hhHHHHHHhccCccHhhhhhHH
Confidence 677899999999998 779996 9999999999999887765533
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.89 E-value=1.2e-23 Score=174.25 Aligned_cols=115 Identities=25% Similarity=0.421 Sum_probs=87.7
Q ss_pred CcchhhhhhcCCCCCCCcccccccChH-HHHHHHHhhhhHHHh---h-cCccHHHHHHHHHHHHHHHHhhcCCcc-cCCc
Q 041152 1 FLYRHIHSQHHRLVVPYAIGALYNHPL-EGLLLDTLGGALSFL---V-SGMTARTAVIFFCFAVIKTVDDHSGLW-LPGN 74 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~-e~l~~~~~~~~l~~~---l-~~~~~~~~~~~~~~~~~~~~~~Hsg~~-~~~~ 74 (135)
++||++|++||++.+|+++++. .||+ |.+...++ ..+|++ + ...+..++.++.++..+.++++|||++ +|+.
T Consensus 153 ~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~ll-~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~ 230 (620)
T PLN02869 153 YLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYFLL-FAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKW 230 (620)
T ss_pred HHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHHHH-HHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccc
Confidence 5899999999999999999887 6886 44433222 223332 2 235677888888889999999999998 4553
Q ss_pred ccc-----cccccCCchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCcc
Q 041152 75 IFN-----LFFQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHL 120 (135)
Q Consensus 75 ~~~-----~~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~ 120 (135)
+.+ ..++.||++|++||++. ++|||. +|++|||||||+.++.+
T Consensus 231 ~~~~~ppLkyll~TPsfHdlHHs~f--d~NYGl-fF~~WDrLFGT~d~~s~ 278 (620)
T PLN02869 231 LFSIFPPLKYLMYTPSYHSLHHTQF--RTNYSL-FMPIYDYIYGTMDKSSD 278 (620)
T ss_pred hhccCCcchheecCchHHhHHhccC--CcCccc-chHHHHhccCCCCCCch
Confidence 221 12478999999999986 789996 99999999999987544
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.88 E-value=7.9e-24 Score=160.34 Aligned_cols=116 Identities=27% Similarity=0.433 Sum_probs=104.4
Q ss_pred CcchhhhhhcCCCCCCCcccccccChHHHHHHHHhhhhHHHhhcCccHHHHHHHHHHHHHHHHhhcCCcccCCccccccc
Q 041152 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGNIFNLFF 80 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~~~ 80 (135)
.+||+.|+.||+.+..+++++.+.||+|.++++ +|..+.+++++.|..+++....+..+|.+.+|.|.-.... +.
T Consensus 154 ~vy~~LH~~HH~~~~~tpfAslafhpidg~lqa-ip~~I~~Fi~Plh~~t~L~l~~f~~iwt~~IHd~~~~~l~----~~ 228 (312)
T KOG0872|consen 154 GVYKRLHKPHHIWNICTPFASLAFHPIDGFLQA-IPYHIYPFIFPLHKVTYLSLFTFVNIWTISIHDGIYGSLN----PP 228 (312)
T ss_pred HHHhhhcchhhhhhccCchhhhhcCcchhHhhh-chhHheeeeecchHHHHHHHHHHHHhHheeeecccccccc----Cc
Confidence 379999999999999999999999999999996 5788888999999999999999999999999999854422 35
Q ss_pred ccCCchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCccccCC
Q 041152 81 QNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLP 124 (135)
Q Consensus 81 ~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~ 124 (135)
++||.+|..||... |.|||+ ++++|||+|||++.|+.++..
T Consensus 229 ingaahHtvHH~~f--~~NYG~-~tilwDrmfgSfr~p~~~~~d 269 (312)
T KOG0872|consen 229 INGAAHHTVHHTYF--DYNYGQ-YTILWDRMFGSFRAPDHEDFD 269 (312)
T ss_pred cccccccceeeeeE--ecCCCc-EEEeHHhccCcccCccccccc
Confidence 78999999999997 889999 999999999999999887554
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.63 E-value=4.8e-16 Score=104.40 Aligned_cols=91 Identities=29% Similarity=0.318 Sum_probs=76.0
Q ss_pred CcchhhhhhcCCCCCCCcccccccChHHHHHHHHhhhhHHHhhcCccHHHHHHHHHHHHHHHHhhcCCcccCCccccccc
Q 041152 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGNIFNLFF 80 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~e~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~~~ 80 (135)
++| ++|+.||+.++|+++++.+.+|+|.++..+++..++.++.+.++.++.++.++..+.+.++|+|+..+..+....+
T Consensus 24 ~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 102 (114)
T PF04116_consen 24 FLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALFYLWYIFIHSGYHHRFPPRLRYL 102 (114)
T ss_pred hHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCccCCCCCcchhH
Confidence 467 8999999999999999999999999999877655566778899999999999999999999999933322222235
Q ss_pred ccCCchhhhccc
Q 041152 81 QNNTAYHDVHHQ 92 (135)
Q Consensus 81 ~~~p~~H~~HH~ 92 (135)
..+|+.|++||+
T Consensus 103 ~~~~~~H~~HH~ 114 (114)
T PF04116_consen 103 FVTPRHHDLHHS 114 (114)
T ss_pred hcCHHHHHhhCc
Confidence 679999999996
No 7
>PLN02434 fatty acid hydroxylase
Probab=98.71 E-value=6.3e-08 Score=73.49 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=31.2
Q ss_pred CchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCcccc
Q 041152 84 TAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVK 122 (135)
Q Consensus 84 p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~ 122 (135)
-+.|..||.++. +.|||. -..+|||+|||+.+.++.+
T Consensus 198 kr~H~~HHfk~~-~~~fGV-Ts~~wD~vFGT~~~~~~~~ 234 (237)
T PLN02434 198 KKYHLNHHFRDQ-DKGFGI-TSSLWDRVFGTLPPSKAAK 234 (237)
T ss_pred HHHHHHHcCCCC-CCCCCc-CchHHHHhcCCCCCcchhh
Confidence 688999999874 789998 7999999999997665544
No 8
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.84 E-value=1.7e-05 Score=64.79 Aligned_cols=114 Identities=24% Similarity=0.293 Sum_probs=67.6
Q ss_pred CcchhhhhhcCCCCCCCc---------ccccccChHHHHHHHHhhhhHHHhhcCc----------cHHHHHHHH---HHH
Q 041152 1 FLYRHIHSQHHRLVVPYA---------IGALYNHPLEGLLLDTLGGALSFLVSGM----------TARTAVIFF---CFA 58 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~---------~~~~~~hp~e~l~~~~~~~~l~~~l~~~----------~~~~~~~~~---~~~ 58 (135)
||| |.|..||.+-.++. -+..+..|.|.+++.++...+..++... +....+.+. +++
T Consensus 35 ~l~-~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 113 (406)
T PRK07424 35 PLY-RLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWLAWLGVLYTLTFLFGAIAR 113 (406)
T ss_pred HHH-HHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHH
Confidence 466 79999999887753 2468899999887765544333222111 111112222 222
Q ss_pred HHHHHhhcCCccc---C----CcccccccccCCchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCc
Q 041152 59 VIKTVDDHSGLWL---P----GNIFNLFFQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYH 119 (135)
Q Consensus 59 ~~~~~~~Hsg~~~---~----~~~~~~~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (135)
.......=++-|. | ..|-. +++.+.+|..||..+. +.-|++ .+++.|+..||....+
T Consensus 114 ~~~~~~~~~~~d~~h~~~~~~~~~~~--~~v~~~~h~rh~~~~~-~~~~~~-~~~~~d~~~~ta~sl~ 177 (406)
T PRK07424 114 GLGLPNADELTDLTHLPGPFETLPSQ--WFVNRPYHWRHHFDNQ-NAYYCG-TFTLVDKLMGTALSLK 177 (406)
T ss_pred hcccccccccccccCCCCcccCCCcc--CeecCceeEEEEeccc-cceeee-eEEEeehhcCcccCCC
Confidence 2222222122332 2 11222 3568899999998774 467886 8999999999987544
No 9
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=96.64 E-value=0.0046 Score=46.28 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=30.0
Q ss_pred CchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCcc
Q 041152 84 TAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHL 120 (135)
Q Consensus 84 p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~ 120 (135)
-++|--||-+.. +..||. -.++||++|||.-..++
T Consensus 201 K~yHl~HHfk~q-~~GfGI-tS~lWD~VFgTl~~~~~ 235 (240)
T KOG0539|consen 201 KKYHLNHHFKHQ-DLGFGI-TSSLWDYVFGTLGPLKP 235 (240)
T ss_pred HHHHhhhhhhcc-ccCccc-cHHHHHHHhccCCCCcc
Confidence 678999999874 789998 69999999999987763
No 10
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=96.09 E-value=0.0053 Score=44.91 Aligned_cols=59 Identities=15% Similarity=-0.012 Sum_probs=40.9
Q ss_pred HHHHhhcCCcccCCc--cccc-ccccCCchhhhcccCCCCCcccCCCChhhhhhhcCCCCCCcc
Q 041152 60 IKTVDDHSGLWLPGN--IFNL-FFQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHL 120 (135)
Q Consensus 60 ~~~~~~Hsg~~~~~~--~~~~-~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~ 120 (135)
-.--+.|.....|.. .+.. =++.+++.|..||..+ .+.||+. +.++|+.+....+-.+.
T Consensus 100 q~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aP-h~~~YCI-~tGw~N~~Ld~~~f~~~ 161 (178)
T PF10520_consen 100 QFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAP-HDTNYCI-TTGWLNPPLDKIRFWRR 161 (178)
T ss_pred HHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCc-ccCCeEe-ecccchHHHHHhhHHHH
Confidence 334578886654421 1211 1567999999999975 5889997 99999998876654444
No 11
>PLN02601 beta-carotene hydroxylase
Probab=93.17 E-value=0.098 Score=40.65 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=45.7
Q ss_pred hhhhhhcCCCCCCCcccccccChHHHHHHHHhhhhHHHhhcCc-----cHHHHH--HH-HHHHHHHHHhhcCCc---ccC
Q 041152 4 RHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGM-----TARTAV--IF-FCFAVIKTVDDHSGL---WLP 72 (135)
Q Consensus 4 ~~~H~~HH~~~~~~~~~~~~~hp~e~l~~~~~~~~l~~~l~~~-----~~~~~~--~~-~~~~~~~~~~~Hsg~---~~~ 72 (135)
|.+|+-||...+ .+ +-.+.+=+++.++ + .+.++.+|. .+...+ .. +.+..+.=.+.|.|+ ++|
T Consensus 164 W~lH~sHH~Pr~-g~---FE~NDlFaVifAv-p-AIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp 237 (303)
T PLN02601 164 WNMHESHHKPRE-GA---FELNDVFAIVNAV-P-AIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFP 237 (303)
T ss_pred hhhhhhcCCCCC-CC---cccccchhhhhHH-H-HHHHHHHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccc
Confidence 478999998875 22 3333333444433 2 223333343 111111 11 122223334677777 566
Q ss_pred Ccccc--cccccCCchhhhcccCCCCCcccCC
Q 041152 73 GNIFN--LFFQNNTAYHDVHHQLQGLKYNYSQ 102 (135)
Q Consensus 73 ~~~~~--~~~~~~p~~H~~HH~~~~~~~Nyg~ 102 (135)
+.+.. ..+-.-.+.|++||+.-....+||.
T Consensus 238 ~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 238 VGPIANVPYLRKVAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred cCCCCCCHHHHHHHHHHHhhccCCcCCccceE
Confidence 55321 1122237889999993223568885
No 12
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=78.16 E-value=3 Score=32.25 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=35.1
Q ss_pred HHHHHHHHhhcCCcccCCcc--cc-cccccCCchhhhcccCCCCCcccCCCChhhhhhhc
Q 041152 56 CFAVIKTVDDHSGLWLPGNI--FN-LFFQNNTAYHDVHHQLQGLKYNYSQPFFSIWDRLL 112 (135)
Q Consensus 56 ~~~~~~~~~~Hsg~~~~~~~--~~-~~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lf 112 (135)
.+..-..-+.|.=..+|..- +. +=++..-.+|+.||..+ .+.||+. ..++|.+..
T Consensus 203 ~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aP-h~~yyCI-~tGw~N~~L 260 (293)
T KOG3011|consen 203 LFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAP-HNTYYCI-VSGWWNWVL 260 (293)
T ss_pred HHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCc-cccceEE-eechhhchH
Confidence 33444445788555666321 11 11355678899999976 6889997 888887654
No 13
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=69.21 E-value=11 Score=27.08 Aligned_cols=77 Identities=25% Similarity=0.360 Sum_probs=41.4
Q ss_pred cchhhhhhcCCCCCCCcccccccChHHHHHHHHhhhhHHHhhcCccHHHHHHHHHHHHHHHHhhcCCcccCCc-------
Q 041152 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSGMTARTAVIFFCFAVIKTVDDHSGLWLPGN------- 74 (135)
Q Consensus 2 ly~~~H~~HH~~~~~~~~~~~~~hp~e~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~------- 74 (135)
.||+.|..||...+- . .+|--..+. +.-++| ..+.+..+..+.++..|.+.+-...
T Consensus 72 ~~r~~H~~HH~~~~~-~-----~Dpd~~~~~--~~W~~P---------~~~~~~~~~~~~~~~eH~~~~~~~~~~~~~tr 134 (175)
T cd03510 72 AYRRSHLKHHRHLGT-E-----DDPDLALYL--LLWLVP---------LLTVFPLIGRIREIAEHAGVPADEDPDARNTR 134 (175)
T ss_pred HHHHHHHHHhCccCC-C-----CCCcHHHHH--HHHHHH---------HHHHHHHHHHHHHHHhccCCCCCCcchhhcCc
Confidence 488999999997642 1 222111111 011222 1223445667778889998742211
Q ss_pred --cccc---ccc--cCCchhhhcccCCC
Q 041152 75 --IFNL---FFQ--NNTAYHDVHHQLQG 95 (135)
Q Consensus 75 --~~~~---~~~--~~p~~H~~HH~~~~ 95 (135)
..++ .++ ..-.+|-.||..+.
T Consensus 135 ~~~~~~~~r~l~~p~~~~YH~eHHl~P~ 162 (175)
T cd03510 135 TTFGGWIERLLFAPHNINYHLEHHLFPA 162 (175)
T ss_pred cccccHHHHHHHcccCCcHHHHHhCCcC
Confidence 1111 122 26789999999873
No 14
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=50.77 E-value=44 Score=26.78 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=31.0
Q ss_pred CchhhhcccCC-----CCCcccCCCChhhhhhhcCCCCCCccc
Q 041152 84 TAYHDVHHQLQ-----GLKYNYSQPFFSIWDRLLGTHMPYHLV 121 (135)
Q Consensus 84 p~~H~~HH~~~-----~~~~Nyg~~~~~~wD~lfGT~~~~~~~ 121 (135)
.+.|+.||... |.+.+=|. +|+=+=+||-|..+...+
T Consensus 122 vrdHR~HHk~tdTD~DPhn~~rGF-~FsHvgWl~~~k~p~~k~ 163 (321)
T KOG1600|consen 122 VRDHRVHHKFTDTDADPHNPRRGF-WFSHVGWLLDKKHPQVKE 163 (321)
T ss_pred HhhhhhhccccccCCCCCCcccch-hhhhhhhHhccCChHHHh
Confidence 68999999975 36788998 999999999998877653
No 15
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=47.55 E-value=48 Score=24.41 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=12.7
Q ss_pred cchhhhhhcCCCCCC
Q 041152 2 LYRHIHSQHHRLVVP 16 (135)
Q Consensus 2 ly~~~H~~HH~~~~~ 16 (135)
.||+.|..||+.++.
T Consensus 74 ~w~~~H~~HH~~~~~ 88 (207)
T cd03514 74 VFRRVHMQHHAHTND 88 (207)
T ss_pred HHHHHHHHHhcCcCc
Confidence 478999999999864
No 16
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=42.29 E-value=1.1e+02 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=13.9
Q ss_pred cCCchhhhcccCCCCCcccC
Q 041152 82 NNTAYHDVHHQLQGLKYNYS 101 (135)
Q Consensus 82 ~~p~~H~~HH~~~~~~~Nyg 101 (135)
.+-..|..||+.+. +.+.|
T Consensus 134 ~GEg~HNnHHafP~-~ar~g 152 (178)
T cd03505 134 FGEGWHNNHHAFPG-DARNG 152 (178)
T ss_pred ccccccccccCCcc-hhhhC
Confidence 36779999999873 44555
No 17
>PLN02220 delta-9 acyl-lipid desaturase
Probab=28.88 E-value=2e+02 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=21.3
Q ss_pred CchhhhcccCCC-----CCcccCCCChhhhhhhcCCC
Q 041152 84 TAYHDVHHQLQG-----LKYNYSQPFFSIWDRLLGTH 115 (135)
Q Consensus 84 p~~H~~HH~~~~-----~~~Nyg~~~~~~wD~lfGT~ 115 (135)
.+.|+.||.... .+.+.|. .++=+=++|-+.
T Consensus 111 v~~HR~HH~~sDt~~DPHsp~~Gf-w~sH~gWl~~~~ 146 (299)
T PLN02220 111 VSTHRFHHQFTDSDRDPHSPIEGF-WFSHVLWIFDTS 146 (299)
T ss_pred HHHHHHHHHhcCCCCCccccccCc-HHHHhHhhcCcc
Confidence 489999999763 3456675 666666777543
No 18
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=27.48 E-value=24 Score=20.03 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=8.4
Q ss_pred cchhhhhhcCC
Q 041152 2 LYRHIHSQHHR 12 (135)
Q Consensus 2 ly~~~H~~HH~ 12 (135)
|||++|++|=.
T Consensus 32 MFkqIHk~~~~ 42 (47)
T PF02208_consen 32 MFKQIHKLHKP 42 (47)
T ss_pred HHHHHHhhccc
Confidence 58889998753
No 19
>PF12431 CitT: Transcriptional regulator
Probab=24.60 E-value=75 Score=16.09 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=15.1
Q ss_pred hhhhhhcCCCCCCccc-cCCCCCcc
Q 041152 106 SIWDRLLGTHMPYHLV-KLPGGGFE 129 (135)
Q Consensus 106 ~~wD~lfGT~~~~~~~-~~~~~Gl~ 129 (135)
.-.|+||+........ .+.--||.
T Consensus 4 ~~VD~lf~~~~~~~~~~~~LPKGID 28 (30)
T PF12431_consen 4 SDVDALFNSQAKEESPAERLPKGID 28 (30)
T ss_pred HHHHHHHCcccCCCCCccCCCCCcc
Confidence 3579999998865554 33234654
No 20
>PHA01740 putative single-stranded DNA-binding protein
Probab=20.65 E-value=70 Score=22.55 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=21.4
Q ss_pred hhhhhhcCCCCCCccccCCCCCcccccCC
Q 041152 106 SIWDRLLGTHMPYHLVKLPGGGFEARLKK 134 (135)
Q Consensus 106 ~~wD~lfGT~~~~~~~~~~~~Gl~~~~~~ 134 (135)
+.=|+-|||.+....+.....-.++++|.
T Consensus 123 p~~~~~~~~~y~~~~~~~~~~~y~epp~d 151 (158)
T PHA01740 123 PQDDKQFGTAYGDSHEDGTRPKYNEPPMD 151 (158)
T ss_pred cccchhcccccCChhhcccccccCCCCcc
Confidence 46689999999887776666666666664
Done!