Query 041152
Match_columns 135
No_of_seqs 144 out of 1040
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 06:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgp_C Inner centromere protei 33.2 12 0.0004 20.2 0.5 13 108-120 24-36 (43)
2 1u83_A Phosphosulfolactate syn 14.4 78 0.0027 23.8 1.8 40 83-129 2-43 (276)
3 3nk4_C ZONA pellucida 3; ferti 12.9 62 0.0021 15.4 0.6 12 80-91 19-30 (30)
4 3t76_A VANU, transcriptional r 11.6 68 0.0023 19.2 0.6 18 83-102 2-19 (88)
5 4emk_A U6 snRNA-associated SM- 9.5 83 0.0028 19.4 0.5 30 83-114 2-31 (94)
6 1q90_G Cytochrome B6F complex 8.9 1.3E+02 0.0046 15.4 1.1 8 28-35 3-10 (37)
7 1r7c_A Genome polyprotein; mem 8.8 98 0.0034 15.3 0.5 9 105-113 6-14 (31)
8 1v9s_A Uracil phosphoribosyltr 8.5 94 0.0032 22.0 0.5 8 107-114 200-207 (208)
9 2ehj_A Uracil phosphoribosyltr 8.5 94 0.0032 22.0 0.5 8 107-114 200-207 (208)
10 1vf5_G Protein PET G; photosyn 8.5 1.3E+02 0.0044 15.5 0.9 26 27-52 2-27 (37)
No 1
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=33.22 E-value=12 Score=20.16 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=9.6
Q ss_pred hhhhcCCCCCCcc
Q 041152 108 WDRLLGTHMPYHL 120 (135)
Q Consensus 108 wD~lfGT~~~~~~ 120 (135)
-|++||+..+++-
T Consensus 24 ~d~iFG~I~pp~L 36 (43)
T 2vgp_C 24 VDRMYGTIDSPKL 36 (43)
T ss_dssp HHHHTTTSCCCCH
T ss_pred HHHHcCCCCCcCH
Confidence 5889998777643
No 2
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=14.45 E-value=78 Score=23.77 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=11.5
Q ss_pred CCchhhhcccCCCCCcccCCCChhhhhhhcC--CCCCCccccCCCCCcc
Q 041152 83 NTAYHDVHHQLQGLKYNYSQPFFSIWDRLLG--THMPYHLVKLPGGGFE 129 (135)
Q Consensus 83 ~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfG--T~~~~~~~~~~~~Gl~ 129 (135)
++.+|.-||+... .| +.+-|++-. =..+.++++|+..|++
T Consensus 2 ~~~~~~~~~~~~~--~~-----~~~~~~m~~~~f~~~~R~~KPR~~GlT 43 (276)
T 1u83_A 2 GSSHHHHHHSSGR--EN-----LYFQGHMNDFSLELPVRTNKPRETGQS 43 (276)
T ss_dssp ------------------------------CCCCCCCCCCCSSCSSSCE
T ss_pred CCccccccccccc--hh-----hHHhhccccccCCCCCcCCCCcccCce
Confidence 4567777888763 22 223333322 1236677888889987
No 3
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=12.87 E-value=62 Score=15.38 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=6.4
Q ss_pred cccCCchhhhcc
Q 041152 80 FQNNTAYHDVHH 91 (135)
Q Consensus 80 ~~~~p~~H~~HH 91 (135)
++.+..+|.-||
T Consensus 19 vllsadhhhhhh 30 (30)
T 3nk4_C 19 VLLSADHHHHHH 30 (30)
T ss_dssp EEBCSCTTCCCC
T ss_pred EEecccccccCC
Confidence 344566665554
No 4
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=11.55 E-value=68 Score=19.25 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=3.0
Q ss_pred CCchhhhcccCCCCCcccCC
Q 041152 83 NTAYHDVHHQLQGLKYNYSQ 102 (135)
Q Consensus 83 ~p~~H~~HH~~~~~~~Nyg~ 102 (135)
+..+|.-||+.++. |++.
T Consensus 2 ~~~~~~~~~~~~~~--~~~~ 19 (88)
T 3t76_A 2 GSSHHHHHHSSGRE--NLYF 19 (88)
T ss_dssp ------------CC--CCSC
T ss_pred CccccccccCCCcc--chhh
Confidence 45677778887753 5553
No 5
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=9.54 E-value=83 Score=19.45 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=7.2
Q ss_pred CCchhhhcccCCCCCcccCCCChhhhhhhcCC
Q 041152 83 NTAYHDVHHQLQGLKYNYSQPFFSIWDRLLGT 114 (135)
Q Consensus 83 ~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT 114 (135)
++.+|.-||++++....-. | +.+..+.-|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-P-l~lL~~~l~k 31 (94)
T 4emk_A 2 GSSHHHHHHSQDPMSMTIL-P-LELIDKCIGS 31 (94)
T ss_dssp ------------------C-H-HHHHHHTTTS
T ss_pred CccccccccccCCcccccc-C-HHHHHHHcCC
Confidence 4567888889876333333 4 6666666654
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=8.91 E-value=1.3e+02 Score=15.37 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 041152 28 EGLLLDTL 35 (135)
Q Consensus 28 e~l~~~~~ 35 (135)
|.++.+.+
T Consensus 3 E~lL~GIV 10 (37)
T 1q90_G 3 EPLLCGIV 10 (37)
T ss_dssp CHHHHHHH
T ss_pred chhhhhHH
Confidence 44444433
No 7
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=8.80 E-value=98 Score=15.27 Aligned_cols=9 Identities=33% Similarity=0.708 Sum_probs=6.4
Q ss_pred hhhhhhhcC
Q 041152 105 FSIWDRLLG 113 (135)
Q Consensus 105 ~~~wD~lfG 113 (135)
-.+||+++-
T Consensus 6 ~~iwdWvct 14 (31)
T 1r7c_A 6 RDIWDWICE 14 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 468888864
No 8
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=8.50 E-value=94 Score=22.02 Aligned_cols=8 Identities=50% Similarity=0.688 Sum_probs=6.1
Q ss_pred hhhhhcCC
Q 041152 107 IWDRLLGT 114 (135)
Q Consensus 107 ~wD~lfGT 114 (135)
.=||+|||
T Consensus 200 aGDR~fgt 207 (208)
T 1v9s_A 200 AGDRIYGT 207 (208)
T ss_dssp HHHHHHTC
T ss_pred HHHhccCC
Confidence 45888887
No 9
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=8.49 E-value=94 Score=22.02 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=6.2
Q ss_pred hhhhhcCC
Q 041152 107 IWDRLLGT 114 (135)
Q Consensus 107 ~wD~lfGT 114 (135)
.=||+|||
T Consensus 200 aGDR~fgt 207 (208)
T 2ehj_A 200 AGDKIFGT 207 (208)
T ss_dssp HHHHHHTC
T ss_pred HHHhhcCC
Confidence 45888887
No 10
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=8.49 E-value=1.3e+02 Score=15.45 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHhhcCccHHHHH
Q 041152 27 LEGLLLDTLGGALSFLVSGMTARTAV 52 (135)
Q Consensus 27 ~e~l~~~~~~~~l~~~l~~~~~~~~~ 52 (135)
+|.++.+.+...+|..+.|.-..++.
T Consensus 2 vEplL~GIVlGlipvtl~GLfv~Ay~ 27 (37)
T 1vf5_G 2 VEPLLDGLVLGLVFATLGGLFYAAYQ 27 (37)
T ss_dssp -------CHHHHHHHHHHHHTHHHHH
T ss_pred CchhhhhHHHhhHHHHHHHHHHHHHH
Done!