Query 041152
Match_columns 135
No_of_seqs 144 out of 1040
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 06:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041152.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041152hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o5oa_ c.61.1.1 (A:) Uracil P 13.9 22 0.0016 23.6 0.5 8 107-114 202-209 (210)
2 d1i5ea_ c.61.1.1 (A:) Uracil P 13.9 23 0.0016 23.6 0.5 8 107-114 200-207 (208)
3 d1v9sa1 c.61.1.1 (A:1-208) Ura 13.9 22 0.0016 23.6 0.5 6 109-114 202-207 (208)
4 d1bd3a_ c.61.1.1 (A:) Uracil P 12.9 25 0.0018 23.7 0.5 7 109-115 218-224 (224)
5 d1ijva_ g.9.1.1 (A:) Beta-defe 12.2 10 0.00075 18.0 -1.2 23 96-120 10-32 (36)
6 d1q90n_ f.23.27.1 (N:) PetN su 9.4 98 0.0071 13.8 2.1 17 52-68 14-30 (31)
7 d1q90g_ f.23.26.1 (G:) PetG su 6.1 1.3E+02 0.0097 13.3 1.4 6 28-33 3-8 (30)
8 d2crda_ g.3.7.2 (A:) Charybdot 6.1 1.1E+02 0.0083 14.2 1.2 13 105-117 14-26 (37)
9 d1puza_ a.218.1.1 (A:) Hypothe 5.3 1.3E+02 0.0098 16.3 1.5 15 106-120 56-70 (82)
10 d2ftxb1 d.300.1.2 (B:155-213) 4.9 97 0.007 16.3 0.6 15 97-112 41-58 (59)
No 1
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=13.90 E-value=22 Score=23.62 Aligned_cols=8 Identities=50% Similarity=0.505 Sum_probs=6.0
Q ss_pred hhhhhcCC
Q 041152 107 IWDRLLGT 114 (135)
Q Consensus 107 ~wD~lfGT 114 (135)
.=||+|||
T Consensus 202 aGDR~fgT 209 (210)
T d1o5oa_ 202 AGDRLFRT 209 (210)
T ss_dssp HHHHHHTC
T ss_pred HHHhhcCC
Confidence 34888888
No 2
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=13.88 E-value=23 Score=23.60 Aligned_cols=8 Identities=63% Similarity=0.820 Sum_probs=6.2
Q ss_pred hhhhhcCC
Q 041152 107 IWDRLLGT 114 (135)
Q Consensus 107 ~wD~lfGT 114 (135)
.=||+|||
T Consensus 200 aGDR~fGT 207 (208)
T d1i5ea_ 200 AGDRLFGT 207 (208)
T ss_dssp HHHHHHSC
T ss_pred HHHhccCC
Confidence 34899998
No 3
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=13.87 E-value=22 Score=23.58 Aligned_cols=6 Identities=67% Similarity=1.182 Sum_probs=5.3
Q ss_pred hhhcCC
Q 041152 109 DRLLGT 114 (135)
Q Consensus 109 D~lfGT 114 (135)
||+|||
T Consensus 202 DR~fgT 207 (208)
T d1v9sa1 202 DRIYGT 207 (208)
T ss_dssp HHHHTC
T ss_pred HhccCC
Confidence 889988
No 4
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=12.91 E-value=25 Score=23.70 Aligned_cols=7 Identities=57% Similarity=0.914 Sum_probs=5.1
Q ss_pred hhhcCCC
Q 041152 109 DRLLGTH 115 (135)
Q Consensus 109 D~lfGT~ 115 (135)
||+|||.
T Consensus 218 DR~fGT~ 224 (224)
T d1bd3a_ 218 DRYFGTM 224 (224)
T ss_dssp HHHHTCC
T ss_pred HhhcCCC
Confidence 7888873
No 5
>d1ijva_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD1 [TaxId: 9606]}
Probab=12.23 E-value=10 Score=17.98 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.3
Q ss_pred CCcccCCCChhhhhhhcCCCCCCcc
Q 041152 96 LKYNYSQPFFSIWDRLLGTHMPYHL 120 (135)
Q Consensus 96 ~~~Nyg~~~~~~wD~lfGT~~~~~~ 120 (135)
+.+||+. -++..|+=||.+..++
T Consensus 10 g~c~~s~--cpl~~ri~gtcy~gka 32 (36)
T d1ijva_ 10 GQCLYSA--CPIFTKIQGTCYRGKA 32 (36)
T ss_dssp CEEESSC--CCTTCCEEEEETTTTE
T ss_pred ceecccc--CcceEeeeeeEecccc
Confidence 4789984 7999999999876654
No 6
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.44 E-value=98 Score=13.77 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhcCC
Q 041152 52 VIFFCFAVIKTVDDHSG 68 (135)
Q Consensus 52 ~~~~~~~~~~~~~~Hsg 68 (135)
++.+.+.....+++-||
T Consensus 14 ~atfsfslslvvwgrsg 30 (31)
T d1q90n_ 14 CVMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHhheeeEEEEEEeccC
Confidence 33334444444444444
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.14 E-value=1.3e+02 Score=13.27 Aligned_cols=6 Identities=50% Similarity=0.479 Sum_probs=2.5
Q ss_pred HHHHHH
Q 041152 28 EGLLLD 33 (135)
Q Consensus 28 e~l~~~ 33 (135)
|.++.+
T Consensus 3 E~ll~G 8 (30)
T d1q90g_ 3 EPLLCG 8 (30)
T ss_dssp CHHHHH
T ss_pred hHHHHh
Confidence 344443
No 8
>d2crda_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=6.05 E-value=1.1e+02 Score=14.24 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.3
Q ss_pred hhhhhhhcCCCCC
Q 041152 105 FSIWDRLLGTHMP 117 (135)
Q Consensus 105 ~~~wD~lfGT~~~ 117 (135)
+++.-++|||.+.
T Consensus 14 W~vCk~~~g~~rG 26 (37)
T d2crda_ 14 WSVCQRLHNTSRG 26 (37)
T ss_dssp HHHHHHHSSCCCE
T ss_pred hHHHHHHhCCCcc
Confidence 5778889999874
No 9
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=5.28 E-value=1.3e+02 Score=16.33 Aligned_cols=15 Identities=7% Similarity=-0.059 Sum_probs=10.2
Q ss_pred hhhhhhcCCCCCCcc
Q 041152 106 SIWDRLLGTHMPYHL 120 (135)
Q Consensus 106 ~~wD~lfGT~~~~~~ 120 (135)
.+||++.|...++..
T Consensus 56 dL~~wl~g~~~~p~~ 70 (82)
T d1puza_ 56 ELLALINGHSETDKG 70 (82)
T ss_dssp HHHHHHHTCSCCSCT
T ss_pred HHHHHHhCCCCCCcH
Confidence 577888777665543
No 10
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.95 E-value=97 Score=16.29 Aligned_cols=15 Identities=47% Similarity=0.919 Sum_probs=9.3
Q ss_pred CcccCCCCh---hhhhhhc
Q 041152 97 KYNYSQPFF---SIWDRLL 112 (135)
Q Consensus 97 ~~Nyg~~~~---~~wD~lf 112 (135)
+.+|+. +| -+||+|-
T Consensus 41 d~k~S~-fF~tnYiWd~L~ 58 (59)
T d2ftxb1 41 DNNLSD-FYKTKYIWERLG 58 (59)
T ss_dssp CTTSCH-HHHHHHHHHHHT
T ss_pred CCcccH-HHHHHHHHHHhc
Confidence 345664 55 4899873
Done!