BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041155
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 139/315 (44%), Gaps = 46/315 (14%)
Query: 184 LQLHRLTYLDLSLNNFSGSPIPEFI-----GSLTKLS-------------------YLDL 219
L+L+ L LDLS N+ SG+ + ++ G L L+ +LD+
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV 207
Query: 220 SFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDW 279
S F IP LG+ SALQHLD+S N L D+ +S+ T L L N+S S +
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLL--NIS-SNQF 259
Query: 280 LQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPY-----N 334
+ + LPL + YL L+LS N+ ++ P+
Sbjct: 260 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 335 XXXXXXXXXXXRGSIPV-AFKHMVSLSFLGLASNEFEGGVPDFFANM-CSLTMLNISDNK 392
G +P+ M L L L+ NEF G +P+ N+ SL L++S N
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 393 LRGH-FPELIQNLSSGCTKNSLEMLYLSSNEITGSVP-DLGGFSSLKELYLENNRLNGFT 450
G P L QN KN+L+ LYL +N TG +P L S L L+L N L+G
Sbjct: 380 FSGPILPNLCQN-----PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 451 NNSIGQMSKLRTLSL 465
+S+G +SKLR L L
Sbjct: 435 PSSLGSLSKLRDLKL 449
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 124/309 (40%), Gaps = 58/309 (18%)
Query: 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLD 218
+V LE +DF L G I L L ++ LS N +G IP++IG L L+ L
Sbjct: 464 YVKTLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILK 520
Query: 219 LSFAEFEGPIPSHLGNLSALQHLDLSLN--------HLFSVGNLDWLSHLSSLTYLDL-- 268
LS F G IP+ LG+ +L LDL+ N +F + ++ Y+ +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 269 --------GSNNL-----SRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXX 315
G+ NL RS ++ P T +Y H P
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-------DNNGS 633
Query: 316 XQFLELSENNLTNSIYPYNXXXXXXXXXXXRGSIPVAFKHMVSLSFLGLASNEFEGGVPD 375
FL++S N L+ G IP M L L L N+ G +PD
Sbjct: 634 MMFLDMSYNMLS-------------------GYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 376 FFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSS 435
++ L +L++S NKL G P+ + L+ L + LS+N ++G +P++G F +
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALT------MLTEIDLSNNNLSGPIPEMGQFET 728
Query: 436 LKELYLENN 444
NN
Sbjct: 729 FPPAKFLNN 737
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 133/311 (42%), Gaps = 36/311 (11%)
Query: 164 EIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFI-GSLTKLSYLDLSFA 222
E++ ++ S G I P L L L YL L+ N F+G IP+F+ G+ L+ LDLS
Sbjct: 248 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGN 304
Query: 223 EFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQV 282
F G +P G+ S L+ L LS N+ +D L + L LDL N S + +
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF--SGELPES 362
Query: 283 VGNLPL-LTTLYLYRCHLP-PIVPXXXXXXXXXXXXQFLELSENNLTNSIYPYNXXXXXX 340
+ NL L TL L + PI+P Q L L N T
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNTLQELYLQNNGFT------------- 407
Query: 341 XXXXXRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPEL 400
G IP + L L L+ N G +P ++ L L + N L G P+
Sbjct: 408 ------GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 401 IQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSK 459
+ + +LE L L N++TG +P L ++L + L NNRL G IG++
Sbjct: 462 LMYVK------TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 460 LRTLSLNGNSL 470
L L L+ NS
Sbjct: 516 LAILKLSNNSF 526
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 160/360 (44%), Gaps = 72/360 (20%)
Query: 114 EEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSNRTGHVIKLEIQPIDFGSF 173
E L++FK+ L D++ +L W ++ C + GV C + I L +P++ G
Sbjct: 12 REIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVG-- 65
Query: 174 PLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS--H 231
+S +LL L L L LS ++ +GS + F S L+ LDLS GP+ +
Sbjct: 66 --FSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCS-ASLTSLDLSRNSLSGPVTTLTS 121
Query: 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRS--TDWLQVVGNLPLL 289
LG+ S L+ L++S N L G + L+SL LDL +N++S + W+ G L
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL- 180
Query: 290 TTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPYNXXXXXXXXXXXRGSI 349
+ L +S N ++ G +
Sbjct: 181 ---------------------------KHLAISGNKIS-------------------GDV 194
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCT 409
V+ V+L FL ++SN F G+P F + +L L+IS NKL G F I S CT
Sbjct: 195 DVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI----STCT 247
Query: 410 KNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSI-GQMSKLRTLSLNGN 468
+ L++L +SSN+ G +P L SL+ L L N+ G + + G L L L+GN
Sbjct: 248 E--LKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 133/316 (42%), Gaps = 49/316 (15%)
Query: 175 LRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGN 234
L GTI +L L +L L L LN G IP+ + + L L L F + G IPS L N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 235 LSALQHLDLSLNHLFSVGNL-DWLSHLSSLTYLDLGSNNLS----------RSTDWLQVV 283
+ L + LS N L G + W+ L +L L L +N+ S RS WL +
Sbjct: 489 CTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 284 GNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPYNXXXXXXXXX 343
NL + +P + Q +++ N + Y Y
Sbjct: 547 TNL--------FNGTIPAAM-----------FKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 344 XXRGSIPVAFKHMVSLSF--------LGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG 395
G++ + F+ + S + S + G F N S+ L++S N L G
Sbjct: 588 HGAGNL-LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 396 HFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSI 454
+ P+ I ++ L +L L N+I+GS+PD +G L L L +N+L+G ++
Sbjct: 647 YIPKEIGSMPY------LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 455 GQMSKLRTLSLNGNSL 470
++ L + L+ N+L
Sbjct: 701 SALTMLTEIDLSNNNL 716
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 15/228 (6%)
Query: 182 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTK-LSYLDLSFAEFEGPIPSHLGN--LSAL 238
LL++ L LDLS N FSG +PE + +L+ L LDLS F GPI +L + L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH 298
Q L L N+ F+ LS+ S L L L N LS + +G+L L L L+
Sbjct: 397 QELYLQ-NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNM 453
Query: 299 LPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYP-----YNXXXXXXXXXXXRGSIPVAF 353
L +P + L L N+LT I N G IP
Sbjct: 454 LEGEIPQELMYVKTL---ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 354 KHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELI 401
+ +L+ L L++N F G +P + SL L+++ N G P +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 139/315 (44%), Gaps = 46/315 (14%)
Query: 184 LQLHRLTYLDLSLNNFSGSPIPEFI-----GSLTKLS-------------------YLDL 219
L+L+ L LDLS N+ SG+ + ++ G L L+ +LD+
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV 204
Query: 220 SFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDW 279
S F IP LG+ SALQHLD+S N L D+ +S+ T L L N+S S +
Sbjct: 205 SSNNFSTGIP-FLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLL--NIS-SNQF 256
Query: 280 LQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPY-----N 334
+ + LPL + YL L+LS N+ ++ P+
Sbjct: 257 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 335 XXXXXXXXXXXRGSIPV-AFKHMVSLSFLGLASNEFEGGVPDFFANM-CSLTMLNISDNK 392
G +P+ M L L L+ NEF G +P+ N+ SL L++S N
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 393 LRGH-FPELIQNLSSGCTKNSLEMLYLSSNEITGSVP-DLGGFSSLKELYLENNRLNGFT 450
G P L QN KN+L+ LYL +N TG +P L S L L+L N L+G
Sbjct: 377 FSGPILPNLCQN-----PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 451 NNSIGQMSKLRTLSL 465
+S+G +SKLR L L
Sbjct: 432 PSSLGSLSKLRDLKL 446
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 124/309 (40%), Gaps = 58/309 (18%)
Query: 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLD 218
+V LE +DF L G I L L ++ LS N +G IP++IG L L+ L
Sbjct: 461 YVKTLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILK 517
Query: 219 LSFAEFEGPIPSHLGNLSALQHLDLSLN--------HLFSVGNLDWLSHLSSLTYLDL-- 268
LS F G IP+ LG+ +L LDL+ N +F + ++ Y+ +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 269 --------GSNNL-----SRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXX 315
G+ NL RS ++ P T +Y H P
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-------DNNGS 630
Query: 316 XQFLELSENNLTNSIYPYNXXXXXXXXXXXRGSIPVAFKHMVSLSFLGLASNEFEGGVPD 375
FL++S N L+ G IP M L L L N+ G +PD
Sbjct: 631 MMFLDMSYNMLS-------------------GYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 376 FFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSS 435
++ L +L++S NKL G P+ + L+ L + LS+N ++G +P++G F +
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALT------MLTEIDLSNNNLSGPIPEMGQFET 725
Query: 436 LKELYLENN 444
NN
Sbjct: 726 FPPAKFLNN 734
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 133/311 (42%), Gaps = 36/311 (11%)
Query: 164 EIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFI-GSLTKLSYLDLSFA 222
E++ ++ S G I P L L L YL L+ N F+G IP+F+ G+ L+ LDLS
Sbjct: 245 ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGN 301
Query: 223 EFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQV 282
F G +P G+ S L+ L LS N+ +D L + L LDL N S + +
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF--SGELPES 359
Query: 283 VGNLPL-LTTLYLYRCHLP-PIVPXXXXXXXXXXXXQFLELSENNLTNSIYPYNXXXXXX 340
+ NL L TL L + PI+P Q L L N T
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNTLQELYLQNNGFT------------- 404
Query: 341 XXXXXRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPEL 400
G IP + L L L+ N G +P ++ L L + N L G P+
Sbjct: 405 ------GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 401 IQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSK 459
+ + +LE L L N++TG +P L ++L + L NNRL G IG++
Sbjct: 459 LMYVK------TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 460 LRTLSLNGNSL 470
L L L+ NS
Sbjct: 513 LAILKLSNNSF 523
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 160/360 (44%), Gaps = 72/360 (20%)
Query: 114 EEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSNRTGHVIKLEIQPIDFGSF 173
E L++FK+ L D++ +L W ++ C + GV C + I L +P++ G
Sbjct: 9 REIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVG-- 62
Query: 174 PLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS--H 231
+S +LL L L L LS ++ +GS + F S L+ LDLS GP+ +
Sbjct: 63 --FSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCS-ASLTSLDLSRNSLSGPVTTLTS 118
Query: 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRS--TDWLQVVGNLPLL 289
LG+ S L+ L++S N L G + L+SL LDL +N++S + W+ G L
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL- 177
Query: 290 TTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPYNXXXXXXXXXXXRGSI 349
+ L +S N ++ G +
Sbjct: 178 ---------------------------KHLAISGNKIS-------------------GDV 191
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCT 409
V+ V+L FL ++SN F G+P F + +L L+IS NKL G F I S CT
Sbjct: 192 DVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI----STCT 244
Query: 410 KNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSI-GQMSKLRTLSLNGN 468
+ L++L +SSN+ G +P L SL+ L L N+ G + + G L L L+GN
Sbjct: 245 E--LKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 133/316 (42%), Gaps = 49/316 (15%)
Query: 175 LRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGN 234
L GTI +L L +L L L LN G IP+ + + L L L F + G IPS L N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 235 LSALQHLDLSLNHLFSVGNL-DWLSHLSSLTYLDLGSNNLS----------RSTDWLQVV 283
+ L + LS N L G + W+ L +L L L +N+ S RS WL +
Sbjct: 486 CTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 284 GNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPYNXXXXXXXXX 343
NL + +P + Q +++ N + Y Y
Sbjct: 544 TNL--------FNGTIPAAM-----------FKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 344 XXRGSIPVAFKHMVSLSF--------LGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG 395
G++ + F+ + S + S + G F N S+ L++S N L G
Sbjct: 585 HGAGNL-LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 396 HFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSI 454
+ P+ I ++ L +L L N+I+GS+PD +G L L L +N+L+G ++
Sbjct: 644 YIPKEIGSMPY------LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 455 GQMSKLRTLSLNGNSL 470
++ L + L+ N+L
Sbjct: 698 SALTMLTEIDLSNNNL 713
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 15/228 (6%)
Query: 182 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTK-LSYLDLSFAEFEGPIPSHLGN--LSAL 238
LL++ L LDLS N FSG +PE + +L+ L LDLS F GPI +L + L
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH 298
Q L L N+ F+ LS+ S L L L N LS + +G+L L L L+
Sbjct: 394 QELYLQ-NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNM 450
Query: 299 LPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYP-----YNXXXXXXXXXXXRGSIPVAF 353
L +P + L L N+LT I N G IP
Sbjct: 451 LEGEIPQELMYVKTL---ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 354 KHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELI 401
+ +L+ L L++N F G +P + SL L+++ N G P +
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 111 CIDEEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSN--RTGHVIKLEIQPI 168
C ++++ALL K+ L + + LSSW P + +R W GV C +T V L++ +
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNR-TWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 169 DFGSFPLRGTISPALLQLHRLTYLDLS-LNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGP 227
+ P I +L L L +L + +NN G PIP I LT+L YL ++ G
Sbjct: 61 NL---PKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 228 IPSHLGNLSALQHLDLSLNHL 248
IP L + L LD S N L
Sbjct: 117 IPDFLSQIKTLVTLDFSYNAL 137
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
FK + +L L + N+ + F + +L L + N+L+ P + +L+
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK------ 134
Query: 413 LEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L L L NE+ S+P +SLKEL L NN+L + ++++L+TL L+ N L
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 471 R 471
+
Sbjct: 194 K 194
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 348 SIPVA-FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL----RGHFPELIQ 402
++P+ F +V+L+ L L N+ + P F ++ LT L++ N+L +G F +L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT- 157
Query: 403 NLSSGCTKNSLEMLYLSSNEITGSVPDLGGF---SSLKELYLENNRLNGFTNNSIGQMSK 459
SL+ L L +N++ VP+ G F + LK L L+NN+L + + K
Sbjct: 158 ---------SLKELRLYNNQLK-RVPE-GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206
Query: 460 LRTLSLNGN 468
L+ L L N
Sbjct: 207 LKMLQLQEN 215
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 185 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLS 244
QL L L L N P P SLTKL+YL L + E + L++L+ L L
Sbjct: 107 QLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 245 LNHLFSV--GNLDWLSHLSSLTYLDLGSNNLSR 275
N L V G D L+ L +L L +N L R
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLK---LDNNQLKR 195
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 19/117 (16%)
Query: 362 LGLASNEFEGGVPDFFANMCSLTMLNISDNKLR----GHFPELIQNLSSGCTKNSLEMLY 417
L L SN+ F + L +L ++DNKL+ G F EL +LE L+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL----------KNLETLW 91
Query: 418 LSSNEITGSVPDLGGFS---SLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
++ N++ ++P +G F +L EL L+ N+L ++KL LSL N L+
Sbjct: 92 VTDNKLQ-ALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 186 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 245
L L L ++ N+F + +P+ L L++LDLS + E P+ +LS+LQ L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 246 NHLFSVGNLDWLSHLSSLTYLDLGSNNLSRS 276
N+ FS+ + L+SL LD N++ S
Sbjct: 209 NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTS 238
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 104/268 (38%), Gaps = 54/268 (20%)
Query: 145 RCKWAG--VGCSNR------TG---HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLD 193
RC +G + C+++ TG +LE++ S P G +L +LT L
Sbjct: 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-HGVFD----KLTQLTKLS 58
Query: 194 LSLN--NFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSV 251
LS N +F G G+ T L YLDLSF + LG L L+HLD ++L +
Sbjct: 59 LSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQM 116
Query: 252 GNLDWLSHLSSLTYLDLGS-----------NNLSRSTDWLQVVGN-------------LP 287
L +L YLD+ N LS S + L++ GN L
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELR 175
Query: 288 LLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTN-SIYPYNXXXXXXXXXXXR 346
LT L L +C L + P Q L +S NN + +PY
Sbjct: 176 NLTFLDLSQCQLEQLSP---TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 347 GSIPVAFKHMV-----SLSFLGLASNEF 369
I + K + SL+FL L N+F
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 353 FKHMVSLSFLGLASNEF-EGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKN 411
F + SL L +A N F E +PD F + +LT L++S +L P +LS
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------ 199
Query: 412 SLEMLYLSSN 421
SL++L +S N
Sbjct: 200 SLQVLNMSHN 209
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 349 IPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGC 408
+P F + +L+FL L+ + E P F ++ SL +LN+S N + C
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-----LDTFPYKC 221
Query: 409 TKNSLEMLYLSSNEI-TGSVPDLGGF-SSLKELYLENN 444
NSL++L S N I T +L F SSL L L N
Sbjct: 222 L-NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 186 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 245
L L L ++ N+F + +P+ L L++LDLS + E P+ +LS+LQ L++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 246 NHLFSVGNLDWLSHLSSLTYLDLGSNNLSRS 276
N+ FS+ + L+SL LD N++ S
Sbjct: 504 NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTS 533
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 95/252 (37%), Gaps = 50/252 (19%)
Query: 163 LEIQPIDFGSFPL--------------RGTISPALLQLHRLTYLDLSLN--NFSGSPIPE 206
LE+ FG FP +G + + + L L +LDLS N +F G
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 207 FIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYL 266
G+ T L YLDLSF + LG L L+HLD ++L + L +L YL
Sbjct: 369 DFGT-TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 267 DL----------GSNNLSRSTDWLQVVGN-------------LPLLTTLYLYRCHLPPIV 303
D+ G N S + L++ GN L LT L L +C L +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 304 PXXXXXXXXXXXXQFLELSENNLTN-SIYPYNXXXXXXXXXXXRGSIPVAFKHMV----- 357
P Q L +S NN + +PY I + K +
Sbjct: 487 P---TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 358 SLSFLGLASNEF 369
SL+FL L N+F
Sbjct: 544 SLAFLNLTQNDF 555
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL ++ +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVAVETNL 112
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 113 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 169 -LRVLHQMP 176
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 186 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 245
L L L ++ N+F + +P+ L L++LDLS + E P+ +LS+LQ L++S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 246 NHLFSVGNLDWLSHLSSLTYLDLGSNNLSRS 276
N+ FS+ + L+SL LD N++ S
Sbjct: 528 NNFFSLDTFPY-KCLNSLQVLDYSLNHIMTS 557
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 96/252 (38%), Gaps = 50/252 (19%)
Query: 163 LEIQPIDFGSFPL--------------RGTISPALLQLHRLTYLDLSLN--NFSGSPIPE 206
LE+ FG FP +G + + + L L +LDLS N +F G
Sbjct: 333 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392
Query: 207 FIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYL 266
G+++ L YLDLSF + LG L L+HLD ++L + L +L YL
Sbjct: 393 DFGTIS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450
Query: 267 DL----------GSNNLSRSTDWLQVVGN-------------LPLLTTLYLYRCHLPPIV 303
D+ G N S + L++ GN L LT L L +C L +
Sbjct: 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510
Query: 304 PXXXXXXXXXXXXQFLELSENNLTN-SIYPYNXXXXXXXXXXXRGSIPVAFKHMV----- 357
P Q L +S NN + +PY I + K +
Sbjct: 511 P---TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
Query: 358 SLSFLGLASNEF 369
SL+FL L N+F
Sbjct: 568 SLAFLNLTQNDF 579
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL ++ +
Sbjct: 85 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVAVETNL 136
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 137 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 193 -LRVLHQMP 200
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 353 FKHMVSLSFLGLASNEF-EGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKN 411
F + SL L +A N F E +PD F + +LT L++S +L P +LS
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------ 518
Query: 412 SLEMLYLSSN 421
SL++L +S N
Sbjct: 519 SLQVLNMSHN 528
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 351 VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR----GHFPELIQNLSS 406
F+ + L++L L N+ + F ++ L L +++N+L G F L Q
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ---- 108
Query: 407 GCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLS 464
L+ LYL N++ S+P + LKEL L N+L + +++ L+TLS
Sbjct: 109 ------LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 465 LNGNSLR 471
L+ N L+
Sbjct: 162 LSTNQLQ 168
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR----GHFPELIQNLSSG 407
F + L LGLA+N+ F ++ L L + N+L+ G F L +
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK----- 132
Query: 408 CTKNSLEMLYLSSNEITGSVPDLGGF---SSLKELYLENNRLNGFTNNSIGQMSKLRTLS 464
L+ L L++N++ S+P G F ++L+ L L N+L + + ++ KL+T++
Sbjct: 133 -----LKELRLNTNQLQ-SIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 465 LNGNSL 470
L GN
Sbjct: 186 LFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 351 VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR----GHFPELIQNLSS 406
F+ + L++L L N+ + F ++ L L +++N+L G F L Q
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ---- 108
Query: 407 GCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLS 464
L+ LYL N++ S+P + LKEL L N+L + +++ L+TLS
Sbjct: 109 ------LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 465 LNGNSLR 471
L+ N L+
Sbjct: 162 LSTNQLQ 168
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR----GHFPELIQNLSSG 407
F + L LGLA+N+ F ++ L L + N+L+ G F L +
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK----- 132
Query: 408 CTKNSLEMLYLSSNEITGSVPDLGGF---SSLKELYLENNRLNGFTNNSIGQMSKLRTLS 464
L+ L L++N++ S+P G F ++L+ L L N+L + + ++ KL+T++
Sbjct: 133 -----LKELRLNTNQLQ-SIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 465 LNGNSL 470
L GN
Sbjct: 186 LFGNQF 191
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 121/287 (42%), Gaps = 72/287 (25%)
Query: 163 LEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF- 221
LE+ FG FP + L L RLT+ +N G+ E L L +LDLS
Sbjct: 309 LELVNCKFGQFP-----TLKLKSLKRLTFT----SNKGGNAFSEV--DLPSLEFLDLSRN 357
Query: 222 -AEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWL 280
F+G ++L++LDLS N + ++ + ++L L L +LD +NL + +++
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLG-LEQLEHLDFQHSNLKQMSEFS 415
Query: 281 QVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELSENNLTNSIYPYNXXXXXX 340
L L +YL H T++ +N
Sbjct: 416 VF---LSLRNLIYLDISH----------------------------THTRVAFNG----- 439
Query: 341 XXXXXRGSIPVAFKHMVSLSFLGLASNEF-EGGVPDFFANMCSLTMLNISDNKLRGHFPE 399
F + SL L +A N F E +PD F + +LT L++S +L P
Sbjct: 440 -----------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 400 LIQNLSSGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENN 444
+LS SL++L ++SN++ SVPD +SL++++L N
Sbjct: 489 AFNSLS------SLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL ++ +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVAVETNL 112
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 113 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 169 -LRVLHQMP 176
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKN 411
A K + +L++L L N+ + F + +L L + +N+L+ + L++
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN----- 134
Query: 412 SLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNS 469
L LYL N++ S+P ++L L L+NN+L ++++L+ LSLN N
Sbjct: 135 -LTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 470 LR 471
L+
Sbjct: 193 LK 194
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 349 IPVA-FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDN-KLRGHFPELIQNLSS 406
+P A F+ +L+ L L SN G F + L L++SDN +LR P + L
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 407 GCTKNSLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
L L+L + P L G ++L+ LYL++N L +N+ + L L L
Sbjct: 106 ------LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 466 NGNSL 470
+GN +
Sbjct: 160 HGNRI 164
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR----GHFPELIQNLSSG 407
F + SL+ L L N+ + F + SLT LN+S N+L+ G F +L Q
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ----- 101
Query: 408 CTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
L+ L L++N++ S+PD + LK+L L N+L + +++ L+ + L
Sbjct: 102 -----LKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155
Query: 466 NGN 468
+ N
Sbjct: 156 HDN 158
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 346 RGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLS 405
R S+P + +L L +N + F + SLT L + NKL+ + L+
Sbjct: 19 RTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 406 SGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
S L L LS+N++ S+P+ + LKEL L N+L + ++++L+ L
Sbjct: 77 S------LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
Query: 464 SLNGNSLR 471
L N L+
Sbjct: 130 RLYQNQLK 137
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
K++ +L+ L L+SN + + SL LN S N++ P + NL++
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTT------ 174
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LE L +SSN+++ + L ++L+ L NN+++ T +G ++ L LSLNGN L+
Sbjct: 175 LERLDISSNKVS-DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK 230
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 182 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 300
L+L+ N L + +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 288 LELNENQLEDIS---PISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 340
Query: 301 PI 302
+
Sbjct: 341 DV 342
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 176 RGTISPALLQLHRLTYLDLSLN--NFSGSPIPEFIGSLTKLSYLDLSFAEFEGPI--PSH 231
+G+IS + L L+YLDLS N +FSG +G+ L +LDLSF G I ++
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSF---NGAIIMSAN 389
Query: 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNN 272
L LQHLD + L V L L YLD+ N
Sbjct: 390 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 430
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 164 EIQPIDFGSFPL-RGTISPALLQLHRLTYLDLSL------------------------NN 198
E+Q +DF L R T A L L +L YLD+S N+
Sbjct: 395 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 454
Query: 199 FSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLS 258
F + + + T L++LDLS + E L LQ L++S N+L + + + +
Sbjct: 455 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-N 513
Query: 259 HLSSLTYLDLGSNNLSRSTDWLQ 281
L SL+ LD N + S LQ
Sbjct: 514 QLYSLSTLDCSFNRIETSKGILQ 536
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 176 RGTISPALLQLHRLTYLDLSLN--NFSGSPIPEFIGSLTKLSYLDLSFAEFEGPI--PSH 231
+G+IS + L L+YLDLS N +FSG +G+ L +LDLSF G I ++
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSF---NGAIIMSAN 394
Query: 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNN 272
L LQHLD + L V L L YLD+ N
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 164 EIQPIDFGSFPL-RGTISPALLQLHRLTYLDLSL------------------------NN 198
E+Q +DF L R T A L L +L YLD+S N+
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 199 FSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLS 258
F + + + T L++LDLS + E L LQ L++S N+L + + + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-N 518
Query: 259 HLSSLTYLDLGSNNLSRSTDWLQ 281
L SL+ LD N + S LQ
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQ 541
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 346 RGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLS 405
R P F + L L L + P F + +L L + DN L+ + ++L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 406 SGCTKNSLEMLYLSSNEITGSVPDLG--GFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
+ L L+L N I+ SVP+ G SL L L NR+ ++ + +L TL
Sbjct: 153 N------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 205
Query: 464 SLNGNSL 470
L N+L
Sbjct: 206 YLFANNL 212
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCT 409
P F+ + +L +L L N + D F ++ +LT L + N++ + L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL----- 175
Query: 410 KNSLEMLYLSSNEITGSVP----DLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
+SL+ L L N + P DLG L LYL N L+ ++ + L+ L L
Sbjct: 176 -HSLDRLLLHQNRVAHVHPHAFRDLG---RLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Query: 466 NGN 468
N N
Sbjct: 232 NDN 234
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 349 IPVA-FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDN-KLRGHFPELIQNLSS 406
+P A F+ +L+ L L SN F + L L++SDN +LR P L
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 407 GCTKNSLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
L L+L + P L G ++L+ LYL++N L +++ + L L L
Sbjct: 106 ------LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 159
Query: 466 NGNSL 470
+GN +
Sbjct: 160 HGNRI 164
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 346 RGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLS 405
R P F + L L L + P F + +L L + DN L+ + ++L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 406 SGCTKNSLEMLYLSSNEITGSVPDLG--GFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
+ L L+L N I+ SVP+ G SL L L NR+ ++ + +L TL
Sbjct: 154 N------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 464 SLNGNSL 470
L N+L
Sbjct: 207 YLFANNL 213
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCT 409
P F+ + +L +L L N + D F ++ +LT L + N++ + L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL----- 176
Query: 410 KNSLEMLYLSSNEITGSVP----DLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
+SL+ L L N + P DLG L LYL N L+ ++ + L+ L L
Sbjct: 177 -HSLDRLLLHQNRVAHVHPHAFRDLG---RLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Query: 466 NGN 468
N N
Sbjct: 233 NDN 235
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 349 IPVA-FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDN-KLRGHFPELIQNLSS 406
+P A F+ +L+ L L SN F + L L++SDN +LR P L
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 407 GCTKNSLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
L L+L + P L G ++L+ LYL++N L +++ + L L L
Sbjct: 107 ------LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160
Query: 466 NGNSL 470
+GN +
Sbjct: 161 HGNRI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL L+ +
Sbjct: 63 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVALETNL 114
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 115 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 171 -LRVLHQMP 178
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 355 HMVSLSFLGLASNEFEG-GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413
H+ +L L +A N + +P++F+N+ +L L++S NK++ + ++ L
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------- 175
Query: 414 EMLYLSSNEITGSVP----DLGGFSS--LKELYLENNRLNGFTNNSIGQMSKLRTLSLNG 467
+M L+ + P G F LKEL L+ N+L + +++ L+ + L+
Sbjct: 176 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 235
Query: 468 N 468
N
Sbjct: 236 N 236
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKN 411
F H L L LA NE + F + L LN+S N L + +NL +
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL------D 347
Query: 412 SLEMLYLSSNEITG-SVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 468
LE+L LS N I G +LKEL L+ N+L + +++ L+ + L+ N
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCT 409
P AF ++ +L LGL SN + F + +LT L+IS+NK+ + Q+L
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY---- 128
Query: 410 KNSLEMLYLSSNEITG-SVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSK---LRTLSL 465
+L+ L + N++ S G +SL++L LE L ++ + LR L
Sbjct: 129 --NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 466 NGNSLR 471
N N++R
Sbjct: 187 NINAIR 192
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 416 LYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LYL N+ T +L + L + L NNR++ +N S M++L TL L+ N LR
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 349 IPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGC 408
+P + L+ + L++N F+NM L L +S N+LR P L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL---- 101
Query: 409 TKNSLEMLYLSSNEITGSVPDLGGFSSLKEL 439
SL +L L N+I+ VP+ G F+ L L
Sbjct: 102 --KSLRLLSLHGNDIS-VVPE-GAFNDLSAL 128
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 186 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSL 245
+ +L L LS N P P L L L L + +LSAL HL +
Sbjct: 77 MTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Query: 246 NHLFSVGNLDWLSHLSSLTYLDLG 269
N L+ N+ WLS Y + G
Sbjct: 136 NPLYCDCNMQWLSDWVKSEYKEPG 159
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL ++ +
Sbjct: 62 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVAVETNL 113
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 114 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 170 -LRVLHQMP 177
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 355 HMVSLSFLGLASNEFEG-GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413
H+ +L L +A N + +P++F+N+ +L L++S NK++ + ++ L
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------- 174
Query: 414 EMLYLSSNEITGSVP----DLGGFSS--LKELYLENNRLNGFTNNSIGQMSKLRTLSLNG 467
+M L+ + P G F LKEL L+ N+L + +++ L+ + L+
Sbjct: 175 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 234
Query: 468 N 468
N
Sbjct: 235 N 235
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL ++ +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVAVETNL 112
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 113 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 169 -LRVLHQMP 176
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 355 HMVSLSFLGLASNEFEG-GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413
H+ +L L +A N + +P++F+N+ +L L++S NK++ + CT +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY----------CTDLRV 171
Query: 414 --EMLYLSSNEITGSVP----DLGGFSS--LKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
+M L+ + P G F LKEL L+ N+L + +++ L+ + L
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231
Query: 466 NGN 468
+ N
Sbjct: 232 HTN 234
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL ++ +
Sbjct: 63 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVAVETNL 114
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 115 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 171 -LRVLHQMP 178
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 355 HMVSLSFLGLASNEFEG-GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413
H+ +L L +A N + +P++F+N+ +L L++S NK++ + ++ L
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------- 175
Query: 414 EMLYLSSNEITGSVP----DLGGFSS--LKELYLENNRLNGFTNNSIGQMSKLRTLSLNG 467
+M L+ + P G F LKEL L+ N+L + +++ L+ + L+
Sbjct: 176 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 235
Query: 468 N 468
N
Sbjct: 236 N 236
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221
+ EIQ I+ G++ +S +L + + L+L FSG + SL KL ++ +
Sbjct: 62 RCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSG------LSSLQKLVAVETNL 113
Query: 222 AEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR--STD 278
A E PI G+L L+ L+++ N + S ++ S+L++L +LDL SN + TD
Sbjct: 114 ASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
Query: 279 WLQVVGNLP 287
L+V+ +P
Sbjct: 170 -LRVLHQMP 177
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 355 HMVSLSFLGLASNEFEG-GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413
H+ +L L +A N + +P++F+N+ +L L++S NK++ + ++ L
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------- 174
Query: 414 EMLYLSSNEITGSVP----DLGGFSS--LKELYLENNRLNGFTNNSIGQMSKLRTLSLNG 467
+M L+ + P G F LKEL L+ N+L + +++ L+ + L+
Sbjct: 175 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 234
Query: 468 N 468
N
Sbjct: 235 N 235
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 189 LTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFE 225
L +LDLS N+F P+ + G+LTKL++L LS A+F
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 370 EGGVPDFFA------NMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEI 423
G+ +FF NM SL L++S N L H + + S+ +L LSSN +
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSSNML 440
Query: 424 TGSVPDLGGFSSL----KELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
TGSV F L K L L NNR+ + + + L+ L++ N L+
Sbjct: 441 TGSV-----FRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLK 486
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 19/97 (19%)
Query: 382 SLTMLNISDNKLR----GHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLK 437
S T L + NKL+ G F +L Q L L LS N+I S+PD G F L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQ----------LTKLSLSQNQIQ-SLPD-GVFDKLT 76
Query: 438 EL---YLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
+L YL N+L N ++++L+ L+L+ N L+
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 348 SIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR----GHFPELIQN 403
S+P S + L L SN+ + F + LT L++S N+++ G F +L +
Sbjct: 21 SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK- 77
Query: 404 LSSGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLR 461
L +LYL N++ S+P+ + LKEL L+ N+L + +++ L+
Sbjct: 78 ---------LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 462 TLSLNGN 468
+ L+ N
Sbjct: 128 KIWLHTN 134
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 183 LLQLHRLTYLDLSLNNFSGSPIPEF--IGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L ++T L+LS G+P+ I L + LDL+ + P L LS LQ
Sbjct: 87 LKNLTKITELELS-----GNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 139
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 300
L L LN + N+ L+ L++L YL +G+N ++ L + NL LTTL +
Sbjct: 140 LYLDLNQ---ITNISPLAGLTNLQYLSIGNNQVND----LTPLANLSKLTTLRADDNKIS 192
Query: 301 PIVP 304
I P
Sbjct: 193 DISP 196
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 412 SLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
+L++LYL N+IT P L G ++L+ L + NN++N T + +SKL TL + N +
Sbjct: 136 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNNQVNDLT--PLANLSKLTTLRADDNKI 191
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
K++ +L+ L L+SN + + SL L+ S N++ P + NL++
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTT------ 174
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LE L +SSN+++ + L ++L+ L NN+++ T +G ++ L LSLNGN L+
Sbjct: 175 LERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK 230
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 182 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLS 274
L+L+ N L + +S+L +LTYL L NN+S
Sbjct: 288 LELNENQLEDIS---PISNLKNLTYLTLYFNNIS 318
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
K++ +L+ L L+SN + + SL L+ S N++ P + NL++
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTT------ 174
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LE L +SSN+++ + L ++L+ L NN+++ T +G ++ L LSLNGN L+
Sbjct: 175 LERLDISSNKVS-DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK 230
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 182 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 300
L+L+ N L + +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 288 LELNENQLEDIS---PISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 340
Query: 301 PI 302
+
Sbjct: 341 DV 342
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 189 LTYLDLSLNNFSGSPIPEF--IGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLN 246
L +L+L N+F I + + +L +L L LSF + +L + H+DLS N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 247 HLFSVGNLDWLSHLSSLTYLDLGSNNLS 274
L S +++ LSHL + YL+L SN++S
Sbjct: 511 RLTS-SSIEALSHLKGI-YLNLASNHIS 536
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 182 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 300
L+L+ N L + +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 287 LELNENQLEDIS---PISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 339
Query: 301 PI 302
+
Sbjct: 340 DV 341
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
K++ +L+ L L+SN + + SL LN F + +L +
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN---------FGNQVTDLKPLANLTT 173
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LE L +SSN+++ + L ++L+ L NN+++ T +G ++ L LSLNGN L+
Sbjct: 174 LERLDISSNKVS-DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK 229
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 182 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 291
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 300
L+L+ N L + +S+L +LTYL L NN+S + V +L L L+ Y +
Sbjct: 292 LELNENQLEDIS---PISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFYNNKVS 344
Query: 301 PI 302
+
Sbjct: 345 DV 346
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
K++ +L+ L L+SN + D A + LT L + F + +L +
Sbjct: 130 LKNLTNLNRLELSSNT----ISDISA-LSGLTSLQ------QLSFGNQVTDLKPLANLTT 178
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LE L +SSN+++ + L ++L+ L NN+++ T +G ++ L LSLNGN L+
Sbjct: 179 LERLDISSNKVS-DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK 234
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 182 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 290
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLS 274
L+L+ N L + +S+L +LTYL L NN+S
Sbjct: 291 LELNENQLEDIS---PISNLKNLTYLTLYFNNIS 321
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
K++ +L+ L L+SN + D A + LT L + F + +L +
Sbjct: 129 LKNLTNLNRLELSSNT----ISDISA-LSGLTSLQ------QLSFGNQVTDLKPLANLTT 177
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LE L +SSN+++ + L ++L+ L NN+++ T +G ++ L LSLNGN L+
Sbjct: 178 LERLDISSNKVS-DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK 233
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 182 ALLQLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240
L L LT LDL+ N S +P+ LTKL+ L L + P L L+AL +
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLS 274
L+L+ N L + +S+L +LTYL L NN+S
Sbjct: 287 LELNENQLEDIS---PISNLKNLTYLTLYFNNIS 317
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412
K++ +L+ L L+SN + + SL LN F + +L +
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN---------FGNQVTDLKPLANLTT 173
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
LE L +SSN+++ + L ++L+ L NN+++ T +G ++ L LSLNGN L+
Sbjct: 174 LERLDISSNKVS-DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLK 229
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 234 NLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN 271
+L +L+HLDLS NHL S+ + W LSSL YL+L N
Sbjct: 98 SLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 234 NLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN 271
+L +L+HLDLS NHL S+ + W LSSL YL+L N
Sbjct: 72 SLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGN 108
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 63/162 (38%), Gaps = 45/162 (27%)
Query: 352 AFKHMVSLSFLGLASN-----EFEGGVPDFFANMCSLT----------MLNISDNKLRG- 395
FK + L L L N F +PD F + L ++++S+N+L
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416
Query: 396 ----------HFPELI--QNLSSGCTKN-------SLEMLYLSSN--------EITGSVP 428
H LI QN S C+ + SLE L+L N E+ V
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV- 475
Query: 429 DLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
G S L+ LYL +N LN ++ LR LSLN N L
Sbjct: 476 -FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 414 EMLYLSSNEITGSVPDLGGFSSL---KELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
++LYL N+IT P G F SL KELYL +N+L +++L L L N L
Sbjct: 43 QILYLHDNQITKLEP--GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVP-DFFANMCSLTMLNISDNKL----RGHFPELIQNL 404
P F +++L L L SN+ G +P F ++ LT+L++ N+L F L+
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH-- 113
Query: 405 SSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLS 464
L+ L++ N++T + + L L L+ N+L + + ++S L
Sbjct: 114 --------LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165
Query: 465 LNGN 468
L GN
Sbjct: 166 LFGN 169
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 357 VSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEML 416
+++ L L N+ F LT L++ N + PEL Q L L++L
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM------LKVL 78
Query: 417 YLSSNEITGSVPDLGGF-SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L NE++ F ++L EL+L +N + NN + L TL L+ N L
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 412 SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
+ ++LYL N+IT P + + L L L+NN+L ++++L LSLN N L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 471 R 471
+
Sbjct: 91 K 91
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 357 VSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEML 416
+++ L L N+ F LT L++ N + PEL Q L L++L
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM------LKVL 88
Query: 417 YLSSNEITGSVPDLGGF-SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L NE++ F ++L EL+L +N + NN + L TL L+ N L
Sbjct: 89 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 357 VSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEML 416
+++ L L N+ F LT L++ N + PEL Q L L++L
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM------LKVL 83
Query: 417 YLSSNEITGSVPDLGGF-SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L NE++ F ++L EL+L +N + NN + L TL L+ N L
Sbjct: 84 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 412 SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
+ ++LYL N+IT P + + L L L+NN+L ++++L LSLN N L
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 471 R 471
+
Sbjct: 99 K 99
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 414 EMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
+ L+L++N+IT P + +L++LY +N+L ++++L L LN N L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL----RGHFPELIQNLS 405
P F H+V+L L SN+ F + LT L+++DN L RG F L
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL----- 104
Query: 406 SGCTKNSLEMLYLSSN 421
SL +YL +N
Sbjct: 105 -----KSLTHIYLYNN 115
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 412 SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
+ ++LYL N IT P + + L L L+NN+L ++++L LSLN N L
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 471 R 471
+
Sbjct: 91 K 91
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN 271
+L +L+HLDLS N+L ++ + W LSSLT+L+L N
Sbjct: 70 FSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGN 108
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 373 VPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEI-TGSVPDLG 431
VPD + + +LN+ +N+++ I ++S LE+L LS N I T +
Sbjct: 58 VPDGIST--NTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109
Query: 432 GFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
G ++L L L +NRL N + +SKL+ L L N +
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 205 PEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLT 264
P SLT+L+YL+L+ + L+ L HL L +N L S+ + +L SLT
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP-MGVFDNLKSLT 115
Query: 265 YLDLGSN 271
++ L +N
Sbjct: 116 HIYLFNN 122
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCT 409
PVA + L+ L + +N+ P AN+ LT L I N++ N T
Sbjct: 216 PVA--NXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI------NAVKDLT 265
Query: 410 KNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 468
K L+ L + SN+I+ + L S L L+L NN+L IG ++ L TL L+ N
Sbjct: 266 K--LKXLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 208 IGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLD 267
+ +L++L++L++ + + + +L+ L+ L++ N + + L+ LS L+SL +L
Sbjct: 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSL-FL- 294
Query: 268 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP 304
NN + +V+G L LTTL+L + H+ I P
Sbjct: 295 ---NNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
SIPV + +L L N + D F ++ L +L +S N L++ +
Sbjct: 31 ASIPVNTR------YLNLQENSIQVIRTDTFKHLRHLEILQLSKN--------LVRKIEV 76
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDLG--GFSSLKELYLENNRLNGFTNNSIGQMSKLRT 462
G SL L L N +T +VP S L+EL+L NN + + + ++ LR
Sbjct: 77 GAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRR 135
Query: 463 LSL 465
L L
Sbjct: 136 LDL 138
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 413 LEMLYLSSNEITG-SVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
LE+L LS N + V G SL L L +NRL + +SKLR L L N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT--------SLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN+L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN 271
+L +L+HLDLS N+L ++ + W LSSLT+L+L N
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGN 134
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT--------SLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN+L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT--------SLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN+L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT--------SLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN+L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 383 LTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLKELY 440
L L++S N+L+ P L Q L + L +L +S N +T S+P L G L+ELY
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPA------LTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 441 LENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L+ N L + KL LSL N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT--------SLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 383 LTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLKELY 440
L L++S N+L+ P L Q L + L +L +S N +T S+P L G L+ELY
Sbjct: 80 LGTLDLSHNQLQS-LPLLGQTLPA------LTVLDVSFNRLT-SLPLGALRGLGELQELY 131
Query: 441 LENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L+ N L + KL LSL N+L
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 75 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT--------SLPL 118
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN L + + L TL
Sbjct: 119 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
Query: 464 SLNGNSL 470
L NSL
Sbjct: 179 LLQENSL 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 383 LTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLKELY 440
L L++S N+L+ P L Q L + L +L +S N +T S+P L G L+ELY
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPA------LTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 441 LENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L+ N L + KL LSL N+L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL--------TSLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 383 LTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLKELY 440
L L++S N+L+ P L Q L + L +L +S N +T S+P L G L+ELY
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPA------LTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 441 LENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L+ N L + KL LSL N+L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL--------TSLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL----RGHFPELIQNLSSG 407
F + +L L L N+ + F + +LT LN++ N+L +G F +L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL------- 156
Query: 408 CTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSL 465
+L L LS N++ S+P+ + LK+L L N+L + +++ L+ + L
Sbjct: 157 ---TNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Query: 466 NGN 468
+ N
Sbjct: 213 HDN 215
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 25/107 (23%)
Query: 182 ALLQLHRLTYLDLSLNNFSGSP----------------------IPEFI-GSLTKLSYLD 218
AL +L LTYL L+ N P +P+ + LT L+YL+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 219 LSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSV--GNLDWLSHLSSL 263
L+ + + L+ L LDLS N L S+ G D L+ L L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 383 LTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLKELY 440
L L++S N+L+ P L Q L + L +L +S N +T S+P L G L+ELY
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPA------LTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 441 LENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L+ N L + KL LSL N+L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT--------SLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 383 LTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLKELY 440
L L++S N+L+ P L Q L + L +L +S N +T S+P L G L+ELY
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPA------LTVLDVSFNRLT-SLPLGALRGLGELQELY 130
Query: 441 LENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L+ N L + KL LSL N+L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
G++PV L L L+ N+ + +P + +LT+L++S N+L +L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL--------TSLPL 117
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463
G + L+ LYL NE+ P L L++L L NN L + + L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 464 SLNGNSL 470
L NSL
Sbjct: 178 LLQENSL 184
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSR 275
L LDLS N+L VGN + S+L SL YL L NN+ R
Sbjct: 250 LTQLDLSYNNLHDVGNGSF-SYLPSLRYLSLEYNNIQR 286
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS 406
SIPV + +L L N + D F ++ L +L +S N L++ +
Sbjct: 31 ASIPVNTR------YLNLQENSIQVIRTDTFKHLRHLEILQLSKN--------LVRKIEV 76
Query: 407 GCTKN--SLEMLYLSSNEITGSVPDLG--GFSSLKELYLENNRLNGFTNNSIGQMSKLRT 462
G SL L L N +T +VP S L+EL+L NN + + + ++ LR
Sbjct: 77 GAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRR 135
Query: 463 LSL 465
L L
Sbjct: 136 LDL 138
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 413 LEMLYLSSNEITG-SVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
LE+L LS N + V G SL L L +NRL + +SKLR L L N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 413 LEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L++LYL N+IT P L G ++L+ L + N +++ T + +SKL TL + N +
Sbjct: 131 LQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI 185
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 264 TYLDLGSNNLSR-STDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXXXXXXXQFLELS 322
T L L N L R S+D L G LP L L L R L I P Q E
Sbjct: 32 TELLLNDNELGRISSDGL--FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 323 ENNLTNSIYP--YNXXXXXXXXXXXRGSIPVAFKHMVSLSFLGLASNEF 369
++N ++ + +P +F+H+ SL+ L LASN F
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 235 LSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDW-LQVVGNLPLLTTLY 293
L L L L+ N L +G+LD L+ L SLTYL + N ++ + L V+ +P + L
Sbjct: 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Query: 294 LYRCHL 299
+ L
Sbjct: 147 FQKVKL 152
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 164 EIQPIDFGSFPLRG----TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDL 219
+I D S L+G ++ LQ HR + D+S F T+L LDL
Sbjct: 234 DIDDEDISSAMLKGLCEMSVESLNLQEHRFS--DISSTTFQ---------CFTQLQELDL 282
Query: 220 SFAEFEGPIPSHLGNLSALQHLDLSLNHL-----FSVGNLDWLSHLSSLTYLDLGSNNLS 274
+ +G +PS + L+ L+ L LS+NH S N L+HL Y+ L
Sbjct: 283 TATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL----YIRGNVKKLH 337
Query: 275 RSTDWLQVVGNLPLL 289
L+ +GNL L
Sbjct: 338 LGVGCLEKLGNLQTL 352
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 360 SFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLS 419
+ L L +N+ D F + L L + +NK+ + L L+ LY+S
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK------LQKLYIS 110
Query: 420 SNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
N + P+L SSL EL + +NR+ + + + + GN L
Sbjct: 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 412 SLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471
L L +S ++TG DL +L EL+L++N++ + + SKL L L N +R
Sbjct: 173 KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 187 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLN 246
+R+ YLD+S+ F+ +L YLDLS + I H L+HLDLS N
Sbjct: 55 NRIQYLDISVFKFNQ-----------ELEYLDLSHNKL-VKISCHPT--VNLKHLDLSFN 100
Query: 247 HLFSVGNLDWLSHLSSLTYLDLGSNNLSRST 277
++ ++S L +L L + +L +S+
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 362 LGLASNEFEG-GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS--LEMLYL 418
L L +NEF F + L +N S+NK I ++ G + + + + L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--------ITDIEEGAFEGASGVNEILL 88
Query: 419 SSNEITGSVPDL-GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
+SN + + G SLK L L +NR+ N+S +S +R LSL N +
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 95/262 (36%), Gaps = 63/262 (24%)
Query: 161 IKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEF-IGSLTKLSYLDL 219
IK ++ +D G+ L +L L LDLS ++ S + +L L YL+L
Sbjct: 331 IKGNMRKLDLGT--------RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 220 SFAEFEGPIPSHLGNLSALQHLDLSLNH------------------------LFSVGNLD 255
S+ E G L+ LD++ H L N
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQH 442
Query: 256 WLSHLSSLTYLDLGSNNLS----RSTDWLQVVGNLPLLTTLYLYRCHLPPIVPXXXXXXX 311
L+ L L +L+L N+ T+ LQ+VG+L +L L C+L I
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI---LSSCNLLSI---DQQAFH 496
Query: 312 XXXXXQFLELSENNLTNSIYPYNXXXXXXXXXXXRGSIPVAFKHMVSLSFLGLASNEFEG 371
L+LS N+LT G A H+ L +L +ASN
Sbjct: 497 GLRNVNHLDLSHNSLT-------------------GDSMDALSHLKGL-YLNMASNNIRI 536
Query: 372 GVPDFFANMCSLTMLNISDNKL 393
P + +++N+S N L
Sbjct: 537 IPPHLLPALSQQSIINLSHNPL 558
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR---GHFPELIQNL---SS 406
FK++ +L L L +N+ P FA + L L +S N+L+ P+ +Q L +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131
Query: 407 GCTK---------NSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQM 457
TK N + ++ L +N + S + G F +K+L T G
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 458 SKLRTLSLNGNSL 470
L L L+GN +
Sbjct: 192 PSLTELHLDGNKI 204
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR---GHFPELIQNL---SS 406
FK++ +L L L +N+ P FA + L L +S N+L+ P+ +Q L +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131
Query: 407 GCTK---------NSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQM 457
TK N + ++ L +N + S + G F +K+L T G
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 458 SKLRTLSLNGNSL 470
L L L+GN +
Sbjct: 192 PSLTELHLDGNKI 204
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 351 VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTK 410
+ +L L L+ N+ P ++ L L+++ N+L+ + + S C
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-----LNGIPSAC-- 107
Query: 411 NSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470
L L+L +NE+ + L +L+ L + NN+L +G +SKL L L+GN +
Sbjct: 108 --LSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEI 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,768,265
Number of Sequences: 62578
Number of extensions: 501371
Number of successful extensions: 2238
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1820
Number of HSP's gapped (non-prelim): 324
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)