Query 041155
Match_columns 471
No_of_seqs 688 out of 4808
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-49 2.6E-54 446.1 24.2 407 5-470 27-464 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-40 1.2E-44 368.2 29.5 335 112-470 27-368 (968)
3 KOG0444 Cytoskeletal regulator 99.9 7.8E-30 1.7E-34 251.6 -4.2 287 158-469 78-373 (1255)
4 KOG4194 Membrane glycoprotein 99.9 2.8E-28 6E-33 239.3 5.6 299 159-470 79-428 (873)
5 KOG4194 Membrane glycoprotein 99.9 2.8E-28 6E-33 239.3 5.5 292 157-467 124-448 (873)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-28 2.6E-33 243.3 -4.2 273 178-470 46-351 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 7.1E-28 1.5E-32 227.1 -3.3 283 160-471 162-541 (565)
8 PRK15387 E3 ubiquitin-protein 99.9 9.1E-23 2E-27 216.0 18.0 254 160-471 203-458 (788)
9 KOG0472 Leucine-rich repeat pr 99.9 1.1E-25 2.5E-30 212.3 -10.7 261 160-470 47-309 (565)
10 KOG0618 Serine/threonine phosp 99.9 5.6E-24 1.2E-28 219.3 -0.4 274 177-469 81-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.6E-20 3.4E-25 212.4 24.2 277 176-468 577-903 (1153)
12 PRK15387 E3 ubiquitin-protein 99.9 3.1E-21 6.7E-26 204.4 15.6 243 158-456 222-467 (788)
13 PLN03210 Resistant to P. syrin 99.9 3.1E-20 6.6E-25 210.1 23.8 105 334-445 779-904 (1153)
14 PRK15370 E3 ubiquitin-protein 99.8 4.2E-20 9.1E-25 196.9 15.0 244 158-448 178-429 (754)
15 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 3.1E-24 192.8 15.3 258 158-461 199-460 (754)
16 cd00116 LRR_RI Leucine-rich re 99.8 6.1E-21 1.3E-25 187.3 2.4 273 178-470 14-319 (319)
17 KOG0618 Serine/threonine phosp 99.8 9E-21 1.9E-25 195.8 -2.7 263 186-468 240-510 (1081)
18 cd00116 LRR_RI Leucine-rich re 99.8 2.1E-19 4.5E-24 176.4 2.2 262 191-471 2-291 (319)
19 KOG0617 Ras suppressor protein 99.6 6E-18 1.3E-22 143.1 -3.8 111 183-299 29-139 (264)
20 KOG0617 Ras suppressor protein 99.6 5.3E-18 1.1E-22 143.4 -5.9 162 211-403 32-194 (264)
21 PLN03150 hypothetical protein; 99.6 2.7E-15 5.8E-20 159.2 12.2 149 4-247 369-526 (623)
22 KOG4237 Extracellular matrix p 99.6 1.2E-17 2.5E-22 158.2 -5.3 88 377-470 270-358 (498)
23 KOG4237 Extracellular matrix p 99.6 4.9E-17 1.1E-21 154.1 -4.5 269 160-447 69-359 (498)
24 PLN03150 hypothetical protein; 99.4 2.9E-12 6.3E-17 136.2 15.1 154 110-272 368-526 (623)
25 PF08263 LRRNT_2: Leucine rich 99.3 3.1E-12 6.8E-17 85.4 4.1 42 5-47 1-43 (43)
26 KOG0532 Leucine-rich repeat (L 99.3 2.7E-13 5.8E-18 134.4 -2.8 199 185-422 73-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.3E-11 2.8E-16 125.0 7.8 185 182-400 111-296 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 5.4E-13 1.2E-17 132.2 -3.1 152 287-454 98-253 (722)
29 COG4886 Leucine-rich repeat (L 99.2 3E-11 6.6E-16 122.3 9.4 200 216-454 97-297 (394)
30 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.4E-16 114.1 1.5 132 329-471 279-412 (490)
31 KOG1909 Ran GTPase-activating 99.1 2.5E-11 5.3E-16 114.2 0.1 251 179-446 22-310 (382)
32 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.6E-16 116.6 0.2 157 208-370 117-284 (505)
33 KOG1909 Ran GTPase-activating 99.0 3.5E-11 7.6E-16 113.2 0.5 238 159-423 31-310 (382)
34 KOG3207 Beta-tubulin folding c 99.0 4E-11 8.7E-16 115.7 0.0 207 184-395 118-340 (505)
35 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5E-15 100.8 4.2 125 159-294 20-147 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.3E-15 99.1 4.3 128 183-321 15-147 (175)
37 KOG0531 Protein phosphatase 1, 98.9 1.7E-10 3.6E-15 117.4 -0.9 109 183-300 91-199 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.8 1E-08 2.3E-13 111.9 7.4 111 182-295 566-676 (889)
39 KOG1259 Nischarin, modulator o 98.8 6.3E-10 1.4E-14 102.7 -1.8 139 177-328 274-413 (490)
40 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.3E-13 74.1 3.7 59 412-470 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 1.4E-09 3.1E-14 110.6 -1.8 244 184-451 69-322 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 6.7E-08 1.5E-12 105.6 6.9 157 157-328 570-731 (889)
43 KOG1859 Leucine-rich repeat pr 98.6 1.3E-09 2.8E-14 111.3 -6.1 175 280-470 102-291 (1096)
44 PF13855 LRR_8: Leucine rich r 98.5 7E-08 1.5E-12 69.8 3.4 59 382-446 2-61 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.4 1.2E-07 2.6E-12 86.7 1.1 247 181-448 24-317 (388)
46 KOG2982 Uncharacterized conser 98.2 6.8E-07 1.5E-11 82.9 3.3 80 381-465 199-286 (418)
47 KOG2120 SCF ubiquitin ligase, 98.2 2.1E-08 4.5E-13 92.8 -7.1 87 188-274 186-273 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.2 2.7E-07 5.9E-12 84.5 -0.3 183 159-347 31-256 (388)
49 KOG1859 Leucine-rich repeat pr 98.2 4E-08 8.6E-13 100.7 -7.0 118 173-300 174-292 (1096)
50 KOG4579 Leucine-rich repeat (L 98.0 3.4E-07 7.3E-12 75.5 -2.7 51 348-400 91-141 (177)
51 KOG2120 SCF ubiquitin ligase, 98.0 7.6E-07 1.6E-11 82.6 -2.0 157 158-323 185-372 (419)
52 KOG3665 ZYG-1-like serine/thre 98.0 2.9E-06 6.3E-11 90.7 1.9 140 159-304 123-267 (699)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 53.4 3.3 36 412-448 2-38 (44)
54 KOG2982 Uncharacterized conser 97.9 2.4E-06 5.2E-11 79.3 -0.8 238 177-442 35-287 (418)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 53.8 2.5 36 188-225 2-37 (44)
56 KOG4579 Leucine-rich repeat (L 97.8 8.6E-07 1.9E-11 73.2 -3.6 100 315-424 28-136 (177)
57 PRK15386 type III secretion pr 97.7 0.00023 5E-09 70.7 9.5 78 182-274 47-125 (426)
58 KOG2739 Leucine-rich acidic nu 97.6 3.3E-05 7.1E-10 70.9 2.7 115 179-296 35-152 (260)
59 KOG3665 ZYG-1-like serine/thre 97.6 3E-05 6.4E-10 83.1 2.0 138 186-330 121-266 (699)
60 PRK15386 type III secretion pr 97.6 0.00017 3.8E-09 71.6 7.2 55 233-297 49-104 (426)
61 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.7E-09 64.5 4.7 108 187-297 42-150 (233)
62 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.9E-08 58.2 5.5 86 353-443 60-149 (233)
63 KOG2739 Leucine-rich acidic nu 96.8 0.0011 2.3E-08 61.2 3.3 16 285-300 89-104 (260)
64 KOG2123 Uncharacterized conser 96.3 0.00013 2.7E-09 67.6 -5.8 101 188-293 20-123 (388)
65 KOG4341 F-box protein containi 96.3 0.00016 3.4E-09 70.6 -5.6 281 158-445 138-437 (483)
66 PF08263 LRRNT_2: Leucine rich 95.9 0.016 3.4E-07 38.3 4.3 41 113-154 2-43 (43)
67 PF00560 LRR_1: Leucine Rich R 95.8 0.0035 7.5E-08 34.8 0.7 21 435-456 1-21 (22)
68 KOG2123 Uncharacterized conser 95.8 0.00046 9.9E-09 64.0 -4.9 101 211-320 18-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0037 8.1E-08 34.7 0.2 21 213-234 1-21 (22)
70 KOG4308 LRR-containing protein 95.5 0.0001 2.2E-09 75.7 -11.3 182 187-371 87-304 (478)
71 KOG4308 LRR-containing protein 93.9 0.00059 1.3E-08 70.1 -10.5 199 236-449 87-305 (478)
72 PF13306 LRR_5: Leucine rich r 93.5 0.24 5.1E-06 41.0 6.5 99 351-460 29-128 (129)
73 PF13306 LRR_5: Leucine rich r 93.1 0.27 5.8E-06 40.7 6.2 105 352-467 7-112 (129)
74 PF13504 LRR_7: Leucine rich r 90.5 0.13 2.9E-06 26.4 0.9 11 214-224 3-13 (17)
75 PF13516 LRR_6: Leucine Rich r 89.4 0.16 3.5E-06 28.6 0.7 20 381-400 2-21 (24)
76 PF13516 LRR_6: Leucine Rich r 88.2 0.13 2.9E-06 28.9 -0.1 21 434-454 2-22 (24)
77 KOG1947 Leucine rich repeat pr 88.2 0.19 4.1E-06 51.9 0.8 115 185-300 186-308 (482)
78 smart00369 LRR_TYP Leucine-ric 87.4 0.51 1.1E-05 27.0 2.0 18 212-230 2-19 (26)
79 smart00370 LRR Leucine-rich re 87.4 0.51 1.1E-05 27.0 2.0 18 212-230 2-19 (26)
80 smart00369 LRR_TYP Leucine-ric 84.7 0.99 2.1E-05 25.8 2.3 13 382-394 3-15 (26)
81 smart00370 LRR Leucine-rich re 84.7 0.99 2.1E-05 25.8 2.3 13 382-394 3-15 (26)
82 KOG4341 F-box protein containi 84.3 0.74 1.6E-05 45.7 2.6 137 158-299 294-438 (483)
83 KOG1947 Leucine rich repeat pr 83.5 0.65 1.4E-05 47.9 2.0 14 259-272 293-306 (482)
84 KOG0473 Leucine-rich repeat pr 82.9 0.04 8.7E-07 50.1 -6.1 88 352-447 37-124 (326)
85 KOG0473 Leucine-rich repeat pr 76.3 0.1 2.2E-06 47.5 -5.7 86 376-470 37-123 (326)
86 KOG3864 Uncharacterized conser 76.1 0.57 1.2E-05 41.9 -1.1 82 357-443 101-185 (221)
87 KOG3864 Uncharacterized conser 72.1 0.7 1.5E-05 41.4 -1.5 82 188-270 102-185 (221)
88 smart00365 LRR_SD22 Leucine-ri 66.6 5.4 0.00012 23.0 1.9 13 434-446 2-14 (26)
89 smart00364 LRR_BAC Leucine-ric 64.7 4.8 0.0001 23.3 1.4 17 213-230 3-19 (26)
90 smart00368 LRR_RI Leucine rich 63.7 5.2 0.00011 23.4 1.5 14 382-395 3-16 (28)
91 KOG4242 Predicted myosin-I-bin 46.0 1E+02 0.0023 31.6 8.1 35 288-323 355-389 (553)
92 KOG3763 mRNA export factor TAP 45.7 11 0.00024 39.0 1.4 13 413-425 272-284 (585)
93 KOG4242 Predicted myosin-I-bin 44.2 35 0.00076 34.8 4.6 33 411-443 354-389 (553)
94 KOG3763 mRNA export factor TAP 35.8 24 0.00051 36.7 2.0 67 234-302 216-285 (585)
95 smart00367 LRR_CC Leucine-rich 28.4 41 0.00089 18.9 1.4 13 457-469 1-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-49 Score=446.10 Aligned_cols=407 Identities=30% Similarity=0.434 Sum_probs=239.7
Q ss_pred cHHhHHHHHHhhhhCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHhhhHH
Q 041155 5 IDEEREAVLTFKESLVDESGVLSSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRVFPILLIITMTVGIR 84 (471)
Q Consensus 5 ~~~e~~aLl~~k~~~~~~~~~l~sW~~~~~~~~~C~W~GV~C~~~~g~V~~L~L~~~~l~~~~~~~~~~~~~~~~~~~l~ 84 (471)
.++|++||++||+++.+|.+.+++|.. ..|||.|+||+|++ .++|++|+|+++++.+. ..+. +..+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~---~~~~------~~~l~ 93 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGK---ISSA------IFRLP 93 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCcccc---CChH------HhCCC
Confidence 468999999999999988888999964 35899999999985 57999999998876652 1111 12334
Q ss_pred HHHHHHHHHHHhhcCccccCCCCccCCCHHHHH-HHHHHHHhCcCCCCCCCCCCCCCCCCCCCCcceeeeCCCCCceEEE
Q 041155 85 LLQQLFLLVILLQLEPRVADSNNMIRCIDEERE-ALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSNRTGHVIKL 163 (471)
Q Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~~g~~p~~~~-~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~l~~L 163 (471)
.|+.|++. +|.+.|.+|.++. .+..++.... ..+.+ .+.......+++++|
T Consensus 94 ~L~~L~Ls------------~n~~~~~ip~~~~~~l~~L~~L~L-s~n~l---------------~~~~p~~~l~~L~~L 145 (968)
T PLN00113 94 YIQTINLS------------NNQLSGPIPDDIFTTSSSLRYLNL-SNNNF---------------TGSIPRGSIPNLETL 145 (968)
T ss_pred CCCEEECC------------CCccCCcCChHHhccCCCCCEEEC-cCCcc---------------ccccCccccCCCCEE
Confidence 44544432 3666777887654 3333322100 01111 111111123456666
Q ss_pred EeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEc
Q 041155 164 EIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDL 243 (471)
Q Consensus 164 ~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L 243 (471)
++++ |.+++.+|..++++++|++|++++|.+.+. +|..++++++|++|++++|.+++.+|..++++++|++|++
T Consensus 146 ~Ls~-----n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 146 DLSN-----NMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred ECcC-----CcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 6665 455555666666666666666666666554 5666666666666666666666666666666666666666
Q ss_pred cCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCC
Q 041155 244 SLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSE 323 (471)
Q Consensus 244 ~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~ 323 (471)
++|.+... .+..++++++|++|++++|.+++. +|..++++++|++|++++|.+.+.+|..+.++ ++|+.|++++
T Consensus 220 ~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~ 293 (968)
T PLN00113 220 GYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL---QKLISLDLSD 293 (968)
T ss_pred cCCccCCc-CChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCeeeccCchhHhhc---cCcCEEECcC
Confidence 66554321 123355555666666666555544 13355555555555555555555555555555 5555555555
Q ss_pred CcCCCccccc-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcc---
Q 041155 324 NNLTNSIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG--- 395 (471)
Q Consensus 324 N~l~g~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--- 395 (471)
|.+++.+|.. +|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..++.+++|+.|++++|++++
T Consensus 294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 5555555442 45555555555555555555555555555555555555555555555555555555555544
Q ss_pred ---------------------cCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchh
Q 041155 396 ---------------------HFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNS 453 (471)
Q Consensus 396 ---------------------~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~ 453 (471)
.+|..++.++ +|+.|++++|+++|.+|. +..++.|+.|++++|+++|.+|..
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACR------SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCC------CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 4444444444 667777777777766666 666777777777777777777766
Q ss_pred hhcCCCCCEEECcCCCC
Q 041155 454 IGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 454 l~~l~~L~~L~Ls~N~l 470 (471)
+..+++|+.|++++|++
T Consensus 448 ~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 448 KWDMPSLQMLSLARNKF 464 (968)
T ss_pred hccCCCCcEEECcCcee
Confidence 66677777777777764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-40 Score=368.18 Aligned_cols=335 Identities=36% Similarity=0.531 Sum_probs=229.0
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCCCCCcceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCE
Q 041155 112 IDEEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTY 191 (471)
Q Consensus 112 ~p~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~ 191 (471)
.|.+..+|.+|+..+.++.+.+..|. ...++|.|.|+.|.+ .++++.|+|++ |.++|.+|+.+..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~-----~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG-----KNISGKISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC-----CCccccCChHHhCCCCCCE
Confidence 46788899999988866666777885 356799999999976 46899999998 5777778888888888888
Q ss_pred EeCCCCCCCCCCcCccCC-CCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCC
Q 041155 192 LDLSLNNFSGSPIPEFIG-SLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGS 270 (471)
Q Consensus 192 L~Ls~n~l~g~~ip~~l~-~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~ 270 (471)
|+|++|.++|. +|..+. ++++|++|+|++|.++|.+|. +.+++|++|++++|.+... .+..++++++|++|++++
T Consensus 98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccccc-CChHHhcCCCCCEEECcc
Confidence 88888888775 776544 777788888877777777665 3466777777777765322 223466677777777777
Q ss_pred ccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc-----cccEEEcccccC
Q 041155 271 NNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY-----NLVLLGLDSNLL 345 (471)
Q Consensus 271 n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l 345 (471)
|.+.+.. |..++++++|++|++++|.+.+.+|..++++ ++|+.|++++|.+++.+|.. +|++|++++|.+
T Consensus 174 n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 174 NVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPRELGQM---KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred CcccccC--ChhhhhCcCCCeeeccCCCCcCcCChHHcCc---CCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 7666552 3456666777777777777766666666666 66677777776666666653 666666666666
Q ss_pred ccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcc
Q 041155 346 RGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITG 425 (471)
Q Consensus 346 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g 425 (471)
++.+|..++++++|++|++++|++++.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~------~L~~L~l~~n~~~~ 322 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ------NLEILHLFSNNFTG 322 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC------CCcEEECCCCccCC
Confidence 666666666666666666666666666666666666666666666666666666665555 56666666666655
Q ss_pred cCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 426 SVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 426 ~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
.+|. ++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 5555 55555566666666655555555555555555555555543
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=7.8e-30 Score=251.62 Aligned_cols=287 Identities=29% Similarity=0.383 Sum_probs=245.5
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccc-cCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHL-GNLS 236 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l-~~l~ 236 (471)
++++.+.+..|++. ...||+.+..+..|+.||||+|++. ..|..+..-+++-.|+||+|++. +||..+ .+++
T Consensus 78 p~LRsv~~R~N~LK----nsGiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLt 150 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLK----NSGIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLT 150 (1255)
T ss_pred hhhHHHhhhccccc----cCCCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhH
Confidence 45778888885332 2458999999999999999999999 58999999999999999999998 888765 5899
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCC-CCCcccccCCCCCCc
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP-PIVPLSLSNLNYSTS 315 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~-g~~p~~l~~l~~~~~ 315 (471)
.|-+|||++|++...+ +.+..+..|++|+|++|.+.... ...+-.+++|++|.+++.+-+ ..+|.++..+ .+
T Consensus 151 DLLfLDLS~NrLe~LP--PQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l---~N 223 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLP--PQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL---HN 223 (1255)
T ss_pred hHhhhccccchhhhcC--HHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhh---hh
Confidence 9999999999976655 45889999999999999887652 234556778888999877643 4688888888 89
Q ss_pred ccEEECCCCcCCCccccc-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcC
Q 041155 316 LQFLELSENNLTNSIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISD 390 (471)
Q Consensus 316 L~~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 390 (471)
|..+|+|.|++.- +|.. +|+.|+||+|+++ ++....+...+|+.|++|.|+++ .+|..+.+++.|+.|.+.+
T Consensus 224 L~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 224 LRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence 9999999999873 4443 8999999999998 55556677789999999999999 7999999999999999999
Q ss_pred CcCcc-cCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCC
Q 041155 391 NKLRG-HFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 468 (471)
Q Consensus 391 N~l~g-~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 468 (471)
|+++- -||..|+++. .|+++..++|.+. ..|. ++.|..|+.|.|++|++- .+|+.|.-++.|+.||+..|
T Consensus 301 NkL~FeGiPSGIGKL~------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLI------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred CcccccCCccchhhhh------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 99874 4899999998 8999999999987 6787 999999999999999986 67999999999999999998
Q ss_pred C
Q 041155 469 S 469 (471)
Q Consensus 469 ~ 469 (471)
+
T Consensus 373 p 373 (1255)
T KOG0444|consen 373 P 373 (1255)
T ss_pred c
Confidence 5
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-28 Score=239.27 Aligned_cols=299 Identities=24% Similarity=0.279 Sum_probs=200.8
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
..+.||+++ |.++..-+..|-++++|+.+++.+|.++ .||.+.+-..+|+.|+|.+|.++..-.+++..++.|
T Consensus 79 ~t~~Ldlsn-----Nkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSN-----NKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ceeeeeccc-----cccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 356788888 5666555667788888888888888888 578877777778888888887775555667777777
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccE
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 318 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~ 318 (471)
+.|||+.|.+..++... +..-.++++|+|++|.++... ...+..+.+|..|.|++|+++...+..|.++ ++|+.
T Consensus 152 rslDLSrN~is~i~~~s-fp~~~ni~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L---~~L~~ 225 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPS-FPAKVNIKKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRL---PKLES 225 (873)
T ss_pred hhhhhhhchhhcccCCC-CCCCCCceEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhc---chhhh
Confidence 77787777765554322 444456777777777766552 1245555666666666666666555555556 66666
Q ss_pred EECCCCcCCCc-------ccc----------------------ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcC
Q 041155 319 LELSENNLTNS-------IYP----------------------YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEF 369 (471)
Q Consensus 319 L~Ls~N~l~g~-------ip~----------------------~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l 369 (471)
|||..|++.-. +|. .++++|+|+.|+++..-..++.++++|+.|+||+|.+
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 66666654311 010 0566677777776655555666667777777777776
Q ss_pred cccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccC------------------CCCcCCccEEEcccCcCcccCCC--
Q 041155 370 EGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSS------------------GCTKNSLEMLYLSSNEITGSVPD-- 429 (471)
Q Consensus 370 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~------------------~~~~~~L~~L~L~~N~l~g~ip~-- 429 (471)
...-++.+...++|++|+|+.|+++.--+..+..+.. ....++|++|||++|.+++.|.+
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 6555666666666777777777666433333332220 01234788888888888887765
Q ss_pred --CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 430 --LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 430 --~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+..+++|+.|++.+|++....-..+..++.|+.|||.+|.+
T Consensus 386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 67788899999999998865556788899999999998875
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-28 Score=239.29 Aligned_cols=292 Identities=27% Similarity=0.334 Sum_probs=194.8
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCc-cCCCCCCCCeEeCCCCcccCCCCccccCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPE-FIGSLTKLSYLDLSFAEFEGPIPSHLGNL 235 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~-~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l 235 (471)
+++++.|+|.+ |.++..-.+++.-++.|+.||||.|.++. +|. .+..-.++++|+|++|.++..--..|..+
T Consensus 124 sghl~~L~L~~-----N~I~sv~se~L~~l~alrslDLSrN~is~--i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l 196 (873)
T KOG4194|consen 124 SGHLEKLDLRH-----NLISSVTSEELSALPALRSLDLSRNLISE--IPKPSFPAKVNIKKLNLASNRITTLETGHFDSL 196 (873)
T ss_pred ccceeEEeeec-----cccccccHHHHHhHhhhhhhhhhhchhhc--ccCCCCCCCCCceEEeecccccccccccccccc
Confidence 46788888887 45544444566777777778888777774 332 34444567777777777775445566677
Q ss_pred CCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCch----------------------hhhhCCCCCCCEEE
Q 041155 236 SALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDW----------------------LQVVGNLPLLTTLY 293 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----------------------~~~l~~l~~L~~L~ 293 (471)
.+|..|.|+.|++...+. ..|.++++|+.|+|..|++.-.... -..+..|.++++|+
T Consensus 197 nsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred chheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 777777777777655543 3356677777777777665432100 01233345555666
Q ss_pred ecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcccc-c----cccEEEcccccCccCcCccccCCCCCCEEeCcCCc
Q 041155 294 LYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYP-Y----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNE 368 (471)
Q Consensus 294 l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~-~----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~ 368 (471)
|..|+++..-..++.++ ++|+.|++|+|.+...-+. | +|+.|+|++|+++.--+.+|..+..|++|+|+.|+
T Consensus 276 L~~N~l~~vn~g~lfgL---t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGL---TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred cccchhhhhhccccccc---chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 66666555444445555 6666666666666543333 2 67777777777765555666666777777777777
Q ss_pred CcccCChhccCCCCCCEEeCcCCcCcccCcHH---hhhccCCCCcCCccEEEcccCcCcccCCC--CCCCCCCCEEECcC
Q 041155 369 FEGGVPDFFANMCSLTMLNISDNKLRGHFPEL---IQNLSSGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLEN 443 (471)
Q Consensus 369 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~~~~~~~~L~~L~L~~N~l~g~ip~--~~~l~~L~~L~Ls~ 443 (471)
++-.--..|..+++|+.|||+.|.+++.|-+. +..++ +|+.|+|.+|++. .||. +..+.+|++|||.+
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~------~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP------SLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch------hhhheeecCceee-ecchhhhccCcccceecCCC
Confidence 66333334666788888888888888766442 33444 8999999999998 5564 99999999999999
Q ss_pred CcccccCchhhhcCCCCCEEECcC
Q 041155 444 NRLNGFTNNSIGQMSKLRTLSLNG 467 (471)
Q Consensus 444 N~l~g~ip~~l~~l~~L~~L~Ls~ 467 (471)
|.+-..-|..|..+ .|+.|.+..
T Consensus 426 NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred Ccceeecccccccc-hhhhhhhcc
Confidence 99998888888888 788776643
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.2e-28 Score=243.34 Aligned_cols=273 Identities=27% Similarity=0.356 Sum_probs=176.3
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCccc-CCCCccccCCCCCCEEEccCCCCCCCCChhh
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFE-GPIPSHLGNLSALQHLDLSLNHLFSVGNLDW 256 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~ 256 (471)
.+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+++..|++. .-||+.|..+..|..|||++|++...+ ..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP--~~ 121 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP--TN 121 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcc--hh
Confidence 45666666666666666666655 24445556666666666666653 236666666777777777777654443 34
Q ss_pred hcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCC--------
Q 041155 257 LSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTN-------- 328 (471)
Q Consensus 257 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g-------- 328 (471)
+...+++-+|+||+|++...|. +.+-+++.|-.|+|++|++.. +|+.+..+ ..|+.|+|++|.+.-
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn--~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL---~~LqtL~Ls~NPL~hfQLrQLPs 195 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPN--SLFINLTDLLFLDLSNNRLEM-LPPQIRRL---SMLQTLKLSNNPLNHFQLRQLPS 195 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCc--hHHHhhHhHhhhccccchhhh-cCHHHHHH---hhhhhhhcCCChhhHHHHhcCcc
Confidence 5566666677777777666643 345566667777777776654 45555566 666777777665431
Q ss_pred -----------------ccccc-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEE
Q 041155 329 -----------------SIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTML 386 (471)
Q Consensus 329 -----------------~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 386 (471)
.+|+. +|..+|+|.|.+. .+|..+.++.+|+.|+||+|+++ ++....+...+|+.|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETL 273 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhh
Confidence 12221 5566666666665 55666666666666666666666 344445555666666
Q ss_pred eCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCc-ccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEE
Q 041155 387 NISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEIT-GSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLS 464 (471)
Q Consensus 387 ~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~-g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 464 (471)
++|.|+++ .+|..+++++ +|+.|.+.+|+++ .-||. +|.+.+|+++..++|.+. .+|+.++.|..|+.|.
T Consensus 274 NlSrNQLt-~LP~avcKL~------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 274 NLSRNQLT-VLPDAVCKLT------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLK 345 (1255)
T ss_pred ccccchhc-cchHHHhhhH------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhc
Confidence 67777766 6777777776 7777777777764 23566 888888888888888775 6788888888888888
Q ss_pred CcCCCC
Q 041155 465 LNGNSL 470 (471)
Q Consensus 465 Ls~N~l 470 (471)
|+.|++
T Consensus 346 L~~NrL 351 (1255)
T KOG0444|consen 346 LDHNRL 351 (1255)
T ss_pred ccccce
Confidence 888875
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=7.1e-28 Score=227.14 Aligned_cols=283 Identities=30% Similarity=0.461 Sum_probs=195.3
Q ss_pred eEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCC
Q 041155 160 VIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQ 239 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~ 239 (471)
+..+++.+ |.+. .+|+..-+++.|++||...|.+. .+|..++.+.+|..|+|..|++. .+| +|..|+.|.
T Consensus 162 l~~l~~~~-----n~l~-~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~ 231 (565)
T KOG0472|consen 162 LSKLDLEG-----NKLK-ALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLK 231 (565)
T ss_pred HHHhhccc-----cchh-hCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHH
Confidence 44555555 5555 34444444777777777777776 47777777777777777777776 566 677777777
Q ss_pred EEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEE
Q 041155 240 HLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFL 319 (471)
Q Consensus 240 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L 319 (471)
+|.++.|++.-.+ .+...++.++.+||+.+|++...| ..+..+.+|++||+++|.+++ .|.+++++ .|+.|
T Consensus 232 Elh~g~N~i~~lp-ae~~~~L~~l~vLDLRdNklke~P---de~clLrsL~rLDlSNN~is~-Lp~sLgnl----hL~~L 302 (565)
T KOG0472|consen 232 ELHVGENQIEMLP-AEHLKHLNSLLVLDLRDNKLKEVP---DEICLLRSLERLDLSNNDISS-LPYSLGNL----HLKFL 302 (565)
T ss_pred HHHhcccHHHhhH-HHHhcccccceeeeccccccccCc---hHHHHhhhhhhhcccCCcccc-CCcccccc----eeeeh
Confidence 7777777753332 233568899999999999999875 488889999999999999998 67788887 57888
Q ss_pred ECCCCcCCC-------------------------------------ccccc-----------------------------
Q 041155 320 ELSENNLTN-------------------------------------SIYPY----------------------------- 333 (471)
Q Consensus 320 ~Ls~N~l~g-------------------------------------~ip~~----------------------------- 333 (471)
.+.+|.+.. ..|.+
T Consensus 303 ~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVf 382 (565)
T KOG0472|consen 303 ALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVF 382 (565)
T ss_pred hhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHH
Confidence 888776520 00110
Q ss_pred ------cccEEEcccccCccCcC------------------------ccccCCCCCCEEeCcCCcCcccCChhccCCCCC
Q 041155 334 ------NLVLLGLDSNLLRGSIP------------------------VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSL 383 (471)
Q Consensus 334 ------~L~~L~Ls~n~l~g~ip------------------------~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 383 (471)
-+...+++.|++. ++| ..+..+++|..|+|++|-+. .+|..++.+..|
T Consensus 383 ea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L 460 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL 460 (565)
T ss_pred HHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh
Confidence 1345556666554 333 33445556666666665555 466666666666
Q ss_pred CEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCE
Q 041155 384 TMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRT 462 (471)
Q Consensus 384 ~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 462 (471)
+.||++.|+|. .+|..+.... .++.+-.++|++...-|+ ++++.+|..||+.+|.+. .||+.+++|++|+.
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq------~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQ------TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred heecccccccc-cchHHHhhHH------HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 66666666665 4555554444 455444455555544455 899999999999999996 78889999999999
Q ss_pred EECcCCCCC
Q 041155 463 LSLNGNSLR 471 (471)
Q Consensus 463 L~Ls~N~l~ 471 (471)
|++++|+|+
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 999999986
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=9.1e-23 Score=215.96 Aligned_cols=254 Identities=27% Similarity=0.282 Sum_probs=181.7
Q ss_pred eEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCC
Q 041155 160 VIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQ 239 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~ 239 (471)
-..|+++. +.++ .+|+.+. ++|+.|++++|+++. +|.. +++|++|++++|+++ .+|.. .++|+
T Consensus 203 ~~~LdLs~-----~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~ 265 (788)
T PRK15387 203 NAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLL 265 (788)
T ss_pred CcEEEcCC-----CCCC-cCCcchh--cCCCEEEccCCcCCC--CCCC---CCCCcEEEecCCccC-cccCc---ccccc
Confidence 34677877 5666 6787765 478999999999883 6753 578999999999888 56753 36788
Q ss_pred EEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEE
Q 041155 240 HLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFL 319 (471)
Q Consensus 240 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L 319 (471)
.|++++|.+...+. -.++|+.|++++|+++..+. ..++|++|++++|++++ +|... .+|+.|
T Consensus 266 ~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~L~~-Lp~lp------~~L~~L 327 (788)
T PRK15387 266 ELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLAS-LPALP------SELCKL 327 (788)
T ss_pred eeeccCCchhhhhh-----chhhcCEEECcCCccccccc------cccccceeECCCCcccc-CCCCc------cccccc
Confidence 88998888654432 22568888888888886643 23678888888888876 34321 457778
Q ss_pred ECCCCcCCCccccc--cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccC
Q 041155 320 ELSENNLTNSIYPY--NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHF 397 (471)
Q Consensus 320 ~Ls~N~l~g~ip~~--~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 397 (471)
++++|.+++ +|.. +|++|++++|++++ +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|+|++ +
T Consensus 328 ~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 328 WAYNNQLTS-LPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred ccccCcccc-ccccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-C
Confidence 888888875 4443 78888888888873 5543 346777888888887 46653 3467888888888873 5
Q ss_pred cHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 398 PELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 398 p~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
|... + +|+.|++++|++++ +|.+ ..+|+.|++++|+++ .+|..++++++|+.|+|++|+|+
T Consensus 398 P~l~---s------~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 398 PVLP---S------ELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCcc---c------CCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 5422 2 68888888888874 5652 245777888888887 67878888888888888888774
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.1e-25 Score=212.33 Aligned_cols=261 Identities=30% Similarity=0.423 Sum_probs=182.4
Q ss_pred eEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCC
Q 041155 160 VIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQ 239 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~ 239 (471)
++.+.++. |.+. .+-+.+.++..|.+|++++|+++ ..|++++.+..++.++.++|+++ .+|+.++.+.+|+
T Consensus 47 l~~lils~-----N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 47 LQKLILSH-----NDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred hhhhhhcc-----Cchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 56677777 4554 34566788999999999999998 47889999999999999999988 8899999999999
Q ss_pred EEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEE
Q 041155 240 HLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFL 319 (471)
Q Consensus 240 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L 319 (471)
.++.++|.+...+ +.++.+..|+.++..+|+++..| ..++++.+|..+++.+|++....|..+. + +.|++|
T Consensus 118 ~l~~s~n~~~el~--~~i~~~~~l~dl~~~~N~i~slp---~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m---~~L~~l 188 (565)
T KOG0472|consen 118 KLDCSSNELKELP--DSIGRLLDLEDLDATNNQISSLP---EDMVNLSKLSKLDLEGNKLKALPENHIA-M---KRLKHL 188 (565)
T ss_pred hhhccccceeecC--chHHHHhhhhhhhccccccccCc---hHHHHHHHHHHhhccccchhhCCHHHHH-H---HHHHhc
Confidence 9999999866554 45888888999999999888774 4778888888899999988876666555 6 788888
Q ss_pred ECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcH
Q 041155 320 ELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPE 399 (471)
Q Consensus 320 ~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 399 (471)
|...|.+. .+|+.++.+.+|..|+|..|++. .+| +|..++.|.+|.++.|++. .+|.
T Consensus 189 d~~~N~L~--------------------tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpa 245 (565)
T KOG0472|consen 189 DCNSNLLE--------------------TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPA 245 (565)
T ss_pred ccchhhhh--------------------cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHH
Confidence 88887765 45555555555555555555555 344 4555555555555555555 4444
Q ss_pred Hhh-hccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 400 LIQ-NLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 400 ~l~-~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
..+ .+. ++.+|||..|+++ +.|+ +..+++|++||+|+|.+++. |.+++++ .|+.|.+.+|++
T Consensus 246 e~~~~L~------~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 246 EHLKHLN------SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred HHhcccc------cceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCch
Confidence 444 333 5555555555555 3444 55555555555555555532 4455555 555555555554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=5.6e-24 Score=219.26 Aligned_cols=274 Identities=32% Similarity=0.451 Sum_probs=203.3
Q ss_pred cccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEE--------------
Q 041155 177 GTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLD-------------- 242 (471)
Q Consensus 177 g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~-------------- 242 (471)
..+|.+.+++.+|+++.|..|.+. ..|..+..+++|++|++++|.|. .+|..+..++.++.+.
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~--~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQ--SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhh--cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 366777788888888888888777 47888888888888888888876 6666544333333333
Q ss_pred ---------------------------ccCCCCCCCC-----Chh---------------------------------hh
Q 041155 243 ---------------------------LSLNHLFSVG-----NLD---------------------------------WL 257 (471)
Q Consensus 243 ---------------------------L~~n~~~~~~-----~~~---------------------------------~l 257 (471)
|.+|.+.... ... ..
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~ 237 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH 237 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc
Confidence 3333311000 000 00
Q ss_pred cCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCC----------------------CCcccccCCCCCCc
Q 041155 258 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP----------------------IVPLSLSNLNYSTS 315 (471)
Q Consensus 258 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g----------------------~~p~~l~~l~~~~~ 315 (471)
..-.+|+++|+++|++++.| +.++.+.+|+.+...+|+++. .+|.....+ +.
T Consensus 238 p~p~nl~~~dis~n~l~~lp---~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~---~s 311 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSNLP---EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGL---KS 311 (1081)
T ss_pred cccccceeeecchhhhhcch---HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccc---ce
Confidence 11135777788888877764 577888899999998888754 234444445 78
Q ss_pred ccEEECCCCcCCCccccc------------------------------cccEEEcccccCccCcCccccCCCCCCEEeCc
Q 041155 316 LQFLELSENNLTNSIYPY------------------------------NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLA 365 (471)
Q Consensus 316 L~~L~Ls~N~l~g~ip~~------------------------------~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls 365 (471)
|+.|||..|++....+.. .|+.|.+.+|.++...-+.+.+.++|+.|+|+
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 899999988876422110 57788899999998877788899999999999
Q ss_pred CCcCcccCChh-ccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCC
Q 041155 366 SNEFEGGVPDF-FANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENN 444 (471)
Q Consensus 366 ~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N 444 (471)
+|++. .+|+. +.++..|+.|+||+|+++ .+|..+..+. .|++|...+|++. ..|.+.+++.|+++|+|.|
T Consensus 392 yNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~------~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 392 YNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG------RLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred ccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh------hhHHHhhcCCcee-echhhhhcCcceEEecccc
Confidence 99998 57654 788999999999999999 7999999988 8999999999998 6678999999999999999
Q ss_pred cccccC-chhhhcCCCCCEEECcCCC
Q 041155 445 RLNGFT-NNSIGQMSKLRTLSLNGNS 469 (471)
Q Consensus 445 ~l~g~i-p~~l~~l~~L~~L~Ls~N~ 469 (471)
+++... |... .-++|++|||++|.
T Consensus 463 ~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 463 NLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhhC-CCcccceeeccCCc
Confidence 998644 4333 23899999999996
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.6e-20 Score=212.44 Aligned_cols=277 Identities=23% Similarity=0.229 Sum_probs=157.4
Q ss_pred ccccchhhhCC-CCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCC-CCCCCC
Q 041155 176 RGTISPALLQL-HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNH-LFSVGN 253 (471)
Q Consensus 176 ~g~ip~~l~~l-~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~-~~~~~~ 253 (471)
...+|..+..+ .+|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .+|..+..+++|++|+++++. +...+
T Consensus 577 ~~~lp~~~~~lp~~Lr~L~~~~~~l~--~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip- 651 (1153)
T PLN03210 577 RWHLPEGFDYLPPKLRLLRWDKYPLR--CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP- 651 (1153)
T ss_pred eeecCcchhhcCcccEEEEecCCCCC--CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-
Confidence 34455555554 34777777766665 366655 3567777777777766 566667777777777777654 22222
Q ss_pred hhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc
Q 041155 254 LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY 333 (471)
Q Consensus 254 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~ 333 (471)
.++.+++|++|++++|..... +|..++++++|+.|++++|..-+.+|..+ ++ ++|+.|++++|...+.+|..
T Consensus 652 --~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l---~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 652 --DLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTGI-NL---KSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred --ccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCCcC-CC---CCCCEEeCCCCCCccccccc
Confidence 356677777777777654333 24466777777777777766555566544 34 66777777666555555443
Q ss_pred --cccEEEcccccCccCcCccc------------------------------cCCCCCCEEeCcCCcCcccCChhccCCC
Q 041155 334 --NLVLLGLDSNLLRGSIPVAF------------------------------KHMVSLSFLGLASNEFEGGVPDFFANMC 381 (471)
Q Consensus 334 --~L~~L~Ls~n~l~g~ip~~l------------------------------~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 381 (471)
+|+.|++++|.+. .+|..+ ...++|+.|++++|...+.+|.++++++
T Consensus 724 ~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~ 802 (1153)
T PLN03210 724 STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802 (1153)
T ss_pred cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence 5666666666554 344321 1123566666666666666666666666
Q ss_pred CCCEEeCcCCcCcccCcHHhhhccC--------C-------CCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCc
Q 041155 382 SLTMLNISDNKLRGHFPELIQNLSS--------G-------CTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNR 445 (471)
Q Consensus 382 ~L~~L~Ls~N~l~g~ip~~l~~l~~--------~-------~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~ 445 (471)
+|+.|++++|...+.+|..+ .++. | ....+|+.|+|++|.++ .+|. ++.+++|++|++++|.
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 67777776665444555433 2220 0 00014555555555554 3444 5555555666555532
Q ss_pred ccccCchhhhcCCCCCEEECcCC
Q 041155 446 LNGFTNNSIGQMSKLRTLSLNGN 468 (471)
Q Consensus 446 l~g~ip~~l~~l~~L~~L~Ls~N 468 (471)
--..+|..+..+++|+.+++++|
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CcCccCcccccccCCCeeecCCC
Confidence 22234445555555555555554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.1e-21 Score=204.38 Aligned_cols=243 Identities=26% Similarity=0.295 Sum_probs=195.6
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
.+++.|++.. |+++ .+|. ..++|++|++++|+++. +|.. .++|++|++++|.++ .+|... ++
T Consensus 222 ~~L~~L~L~~-----N~Lt-~LP~---lp~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~ 283 (788)
T PRK15387 222 AHITTLVIPD-----NNLT-SLPA---LPPELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLT-HLPALP---SG 283 (788)
T ss_pred cCCCEEEccC-----CcCC-CCCC---CCCCCcEEEecCCccCc--ccCc---ccccceeeccCCchh-hhhhch---hh
Confidence 4688899988 5666 4665 35899999999999994 6754 468999999999998 567633 57
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|+.|++++|++...+. ..++|++|++++|++.+.+.++ .+|+.|++++|++++ +|.. . .+|+
T Consensus 284 L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~lp------~~L~~L~Ls~N~L~~-LP~l---p---~~Lq 345 (788)
T PRK15387 284 LCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPALP------SELCKLWAYNNQLTS-LPTL---P---SGLQ 345 (788)
T ss_pred cCEEECcCCccccccc-----cccccceeECCCCccccCCCCc------ccccccccccCcccc-cccc---c---cccc
Confidence 8899999999766542 2478999999999999875322 358889999999986 5531 1 5799
Q ss_pred EEECCCCcCCCccccc--cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcc
Q 041155 318 FLELSENNLTNSIYPY--NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG 395 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~--~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 395 (471)
.|++++|++++ +|.. +++.|++++|+++ .+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|+++
T Consensus 346 ~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls- 415 (788)
T PRK15387 346 ELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT- 415 (788)
T ss_pred eEecCCCccCC-CCCCCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-
Confidence 99999999996 4443 8999999999998 47754 3579999999999994 7754 367999999999999
Q ss_pred cCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhc
Q 041155 396 HFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQ 456 (471)
Q Consensus 396 ~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~ 456 (471)
.+|... . +|+.|++++|+++ .+|. ++++++|+.|+|++|.|+|.+|..+..
T Consensus 416 sIP~l~---~------~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 416 SLPMLP---S------GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCcch---h------hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 477532 2 6889999999998 7888 999999999999999999998887643
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.1e-20 Score=210.12 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=69.9
Q ss_pred cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhc--------------------cCCCCCCEEeCcCCcC
Q 041155 334 NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFF--------------------ANMCSLTMLNISDNKL 393 (471)
Q Consensus 334 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l--------------------~~l~~L~~L~Ls~N~l 393 (471)
+|+.|++++|...+.+|.+++++++|+.|++++|..-+.+|..+ ...++|+.|+|++|.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 45555555555555556555566666666665554333444332 0124567777777777
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCc
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNR 445 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~ 445 (471)
+ .+|.++..++ +|+.|++++|+--..+|. +..++.|+.+++++|.
T Consensus 859 ~-~iP~si~~l~------~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 859 E-EVPWWIEKFS------NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c-cChHHHhcCC------CCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 7 6888888887 899999998544445666 8899999999999884
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=4.2e-20 Score=196.86 Aligned_cols=244 Identities=24% Similarity=0.381 Sum_probs=182.4
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
.+...|++++ +.++ .+|..+. +.|+.|++++|+++. +|..+. ++|++|++++|+++ .+|..+. .+
T Consensus 178 ~~~~~L~L~~-----~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~ 242 (754)
T PRK15370 178 NNKTELRLKI-----LGLT-TIPACIP--EQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLT-SIPATLP--DT 242 (754)
T ss_pred cCceEEEeCC-----CCcC-cCCcccc--cCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccc-cCChhhh--cc
Confidence 3567899988 4555 4666553 579999999999993 787654 58999999999998 6887664 47
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|+.|++++|.+...+ ..+. ++|+.|++++|++...+. .+. ++|+.|++++|++++ +|..+. ++|+
T Consensus 243 L~~L~Ls~N~L~~LP--~~l~--s~L~~L~Ls~N~L~~LP~---~l~--~sL~~L~Ls~N~Lt~-LP~~lp-----~sL~ 307 (754)
T PRK15370 243 IQEMELSINRITELP--ERLP--SALQSLDLFHNKISCLPE---NLP--EELRYLSVYDNSIRT-LPAHLP-----SGIT 307 (754)
T ss_pred ccEEECcCCccCcCC--hhHh--CCCCEEECcCCccCcccc---ccC--CCCcEEECCCCcccc-Ccccch-----hhHH
Confidence 999999999976554 2232 579999999999986543 332 589999999999986 454332 5788
Q ss_pred EEECCCCcCCCcccc---ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCc
Q 041155 318 FLELSENNLTNSIYP---YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR 394 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~---~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 394 (471)
.|++++|.++. +|. .+|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 308 ~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 308 HLNVQSNSLTA-LPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred HHHhcCCcccc-CCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 99999999885 343 278888888888874 676553 67888888888887 5776653 57888888888888
Q ss_pred ccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-----CCCCCCCCEEECcCCcccc
Q 041155 395 GHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-----LGGFSSLKELYLENNRLNG 448 (471)
Q Consensus 395 g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-----~~~l~~L~~L~Ls~N~l~g 448 (471)
.+|..+.. .|+.|++++|+++ .+|. .+.++.+..|++.+|.++.
T Consensus 381 -~LP~~l~~--------sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 381 -NLPENLPA--------ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred -CCCHhHHH--------HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 56765542 5888888888887 4443 3445778888888888763
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.4e-19 Score=192.78 Aligned_cols=258 Identities=21% Similarity=0.343 Sum_probs=179.5
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
..++.|++++ |.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|+|++|.++ .+|..+. ++
T Consensus 199 ~~L~~L~Ls~-----N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt--sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~ 263 (754)
T PRK15370 199 EQITTLILDN-----NELK-SLPENLQ--GNIKTLYANSNQLT--SIPATLP--DTIQEMELSINRIT-ELPERLP--SA 263 (754)
T ss_pred cCCcEEEecC-----CCCC-cCChhhc--cCCCEEECCCCccc--cCChhhh--ccccEEECcCCccC-cCChhHh--CC
Confidence 4678888887 5666 5676654 58899999999888 3676553 47889999999887 7787764 57
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|++|++++|++...+ ..+. ++|+.|++++|++++.+. .+. ++|+.|++++|.++. +|..+. ++|+
T Consensus 264 L~~L~Ls~N~L~~LP--~~l~--~sL~~L~Ls~N~Lt~LP~---~lp--~sL~~L~Ls~N~Lt~-LP~~l~-----~sL~ 328 (754)
T PRK15370 264 LQSLDLFHNKISCLP--ENLP--EELRYLSVYDNSIRTLPA---HLP--SGITHLNVQSNSLTA-LPETLP-----PGLK 328 (754)
T ss_pred CCEEECcCCccCccc--cccC--CCCcEEECCCCccccCcc---cch--hhHHHHHhcCCcccc-CCcccc-----ccce
Confidence 899999988876543 2232 478999999998887642 222 468888899988886 454332 5788
Q ss_pred EEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCc
Q 041155 318 FLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR 394 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 394 (471)
.|++++|.+++ +|.. +|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ..|+.|++++|+++
T Consensus 329 ~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 329 TLEAGENALTS-LPASLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred eccccCCcccc-CChhhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 89999988876 4442 7889999999887 5676553 67889999999988 5777664 36888899999888
Q ss_pred ccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccC-chhhhcCCCCC
Q 041155 395 GHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFT-NNSIGQMSKLR 461 (471)
Q Consensus 395 g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~ 461 (471)
.+|..+..+.. ..+.+..+++.+|.++. ..+.+|+.| ++.+.+.|.+ +...+.+.+++
T Consensus 402 -~LP~sl~~~~~--~~~~l~~L~L~~Npls~-----~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~ 460 (754)
T PRK15370 402 -RLPESLPHFRG--EGPQPTRIIVEYNPFSE-----RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVR 460 (754)
T ss_pred -cCchhHHHHhh--cCCCccEEEeeCCCccH-----HHHHHHHHh-hhcccccCCccccccccccccc
Confidence 56666554421 11267888999888763 234445555 4445555533 43444444444
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=6.1e-21 Score=187.29 Aligned_cols=273 Identities=27% Similarity=0.282 Sum_probs=175.0
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCC---CcCccCCCCCCCCeEeCCCCcccC------CCCccccCCCCCCEEEccCCCC
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEFEG------PIPSHLGNLSALQHLDLSLNHL 248 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~---~ip~~l~~l~~L~~L~Ls~n~l~g------~ip~~l~~l~~L~~L~L~~n~~ 248 (471)
..+..+..+..|++|+++++.++.. .++..+...+.|++++++++.+.+ .++..+.++++|++|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3445555666788888888877432 245556667778888887776652 2334556677777777777775
Q ss_pred CCCCChhhhcCC---CCCcEEEcCCccCCCC--CchhhhhCCC-CCCCEEEecCCCCCCCCc----ccccCCCCCCcccE
Q 041155 249 FSVGNLDWLSHL---SSLTYLDLGSNNLSRS--TDWLQVVGNL-PLLTTLYLYRCHLPPIVP----LSLSNLNYSTSLQF 318 (471)
Q Consensus 249 ~~~~~~~~l~~l---~~L~~L~Ls~n~l~~~--~~~~~~l~~l-~~L~~L~l~~n~l~g~~p----~~l~~l~~~~~L~~ 318 (471)
.... ...+..+ ++|++|++++|++++. ..+...+..+ ++|++|++++|.+++..+ ..+..+ ++|+.
T Consensus 94 ~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~---~~L~~ 169 (319)
T cd00116 94 GPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN---RDLKE 169 (319)
T ss_pred ChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC---CCcCE
Confidence 3211 1223333 3377777777777643 1123345555 677777777777764322 223333 56666
Q ss_pred EECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCccc----CChhccCCCCCCEEeCcCCcCc
Q 041155 319 LELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG----VPDFFANMCSLTMLNISDNKLR 394 (471)
Q Consensus 319 L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 394 (471)
|++++|.+++... ..++..+...++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 170 L~l~~n~l~~~~~---------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 170 LNLANNGIGDAGI---------------RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred EECcCCCCchHHH---------------HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 6666666553110 12344555667899999999988743 4455677889999999999998
Q ss_pred ccCcHHhhhccCCCCcCCccEEEcccCcCc--c--cCCC-CCCCCCCCEEECcCCccccc----CchhhhcC-CCCCEEE
Q 041155 395 GHFPELIQNLSSGCTKNSLEMLYLSSNEIT--G--SVPD-LGGFSSLKELYLENNRLNGF----TNNSIGQM-SKLRTLS 464 (471)
Q Consensus 395 g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~--g--~ip~-~~~l~~L~~L~Ls~N~l~g~----ip~~l~~l-~~L~~L~ 464 (471)
+..+..+...... ....|+.|++++|.++ | .+.. +..+++|+++++++|.++.. +...+... +.|++++
T Consensus 235 ~~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 235 DAGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred hHHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 7544444332100 1237999999999987 2 2333 66678999999999999965 44445455 7899999
Q ss_pred CcCCCC
Q 041155 465 LNGNSL 470 (471)
Q Consensus 465 Ls~N~l 470 (471)
+.+|+|
T Consensus 314 ~~~~~~ 319 (319)
T cd00116 314 VKDDSF 319 (319)
T ss_pred cCCCCC
Confidence 999875
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=9e-21 Score=195.84 Aligned_cols=263 Identities=31% Similarity=0.445 Sum_probs=199.5
Q ss_pred CCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcE
Q 041155 186 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTY 265 (471)
Q Consensus 186 l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 265 (471)
-.+|+++++++|++++ +|++++.+.+|+.++..+|.++ .+|..+...++|+.|++..|.+...+ .....++.|++
T Consensus 240 p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip--~~le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP--PFLEGLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhhc--chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC--Ccccccceeee
Confidence 3578999999999985 7899999999999999999996 88999999999999999999876665 34677899999
Q ss_pred EEcCCccCCCCCchhhhhCCCCC-CCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc-----cccEEE
Q 041155 266 LDLGSNNLSRSTDWLQVVGNLPL-LTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY-----NLVLLG 339 (471)
Q Consensus 266 L~Ls~n~l~~~~~~~~~l~~l~~-L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~-----~L~~L~ 339 (471)
|||..|++...|+ ..+..... |+.|..+.|.+....-..-..+ +.|+.|.+.+|.++...-+. .|+.|+
T Consensus 315 LdL~~N~L~~lp~--~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~---~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPD--NFLAVLNASLNTLNVSSNKLSTLPSYEENNH---AALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eeehhccccccch--HHHhhhhHHHHHHhhhhccccccccccchhh---HHHHHHHHhcCcccccchhhhccccceeeee
Confidence 9999999988754 23333333 6777777777655331111123 67889999999998765442 889999
Q ss_pred cccccCccCcCc-cccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEc
Q 041155 340 LDSNLLRGSIPV-AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYL 418 (471)
Q Consensus 340 Ls~n~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L 418 (471)
|++|++. .+|+ .+.++..|+.|+||+|+++ .+|..+.++..|++|....|++. .+| .+.+++ .|+.+|+
T Consensus 390 LsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~------qL~~lDl 459 (1081)
T KOG0618|consen 390 LSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP------QLKVLDL 459 (1081)
T ss_pred ecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC------cceEEec
Confidence 9999987 5554 5678889999999999998 78999999999999999999998 677 778887 8999999
Q ss_pred ccCcCccc-CCCCCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCC
Q 041155 419 SSNEITGS-VPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 468 (471)
Q Consensus 419 ~~N~l~g~-ip~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 468 (471)
+.|+++.. +|..---++|++||+++|.-.-.--..+..+..+...++.-|
T Consensus 460 S~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99998754 333222288999999999632222234455555555555443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.1e-19 Score=176.39 Aligned_cols=262 Identities=25% Similarity=0.243 Sum_probs=175.9
Q ss_pred EEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCC----CCccccCCCCCCEEEccCCCCCCCC-----ChhhhcCCC
Q 041155 191 YLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGP----IPSHLGNLSALQHLDLSLNHLFSVG-----NLDWLSHLS 261 (471)
Q Consensus 191 ~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~----ip~~l~~l~~L~~L~L~~n~~~~~~-----~~~~l~~l~ 261 (471)
.|+|..+.+++...+..+..+++|++|+++++.++.. ++..+...++|++++++++.+.... ....+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4778888888655777777788899999999988542 5666677788899998888754211 013456677
Q ss_pred CCcEEEcCCccCCCCCchhhhhCCC---CCCCEEEecCCCCCCCCccccc-CCCCC-CcccEEECCCCcCCCcccccccc
Q 041155 262 SLTYLDLGSNNLSRSTDWLQVVGNL---PLLTTLYLYRCHLPPIVPLSLS-NLNYS-TSLQFLELSENNLTNSIYPYNLV 336 (471)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~~~l~~l---~~L~~L~l~~n~l~g~~p~~l~-~l~~~-~~L~~L~Ls~N~l~g~ip~~~L~ 336 (471)
+|+.|++++|.+.+.. +..+..+ ++|++|++++|++++.....+. .+..+ ++|+.|++++|.+++...
T Consensus 82 ~L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----- 154 (319)
T cd00116 82 GLQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC----- 154 (319)
T ss_pred ceeEEEccCCCCChhH--HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-----
Confidence 8888888888776531 1223223 4488888888777642111111 11111 456666666666553211
Q ss_pred EEEcccccCccCcCccccCCCCCCEEeCcCCcCccc----CChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCC
Q 041155 337 LLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG----VPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412 (471)
Q Consensus 337 ~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~ 412 (471)
..++..+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++..+..+.... ..+++
T Consensus 155 ----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~--~~~~~ 222 (319)
T cd00116 155 ----------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL--ASLKS 222 (319)
T ss_pred ----------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh--cccCC
Confidence 12445567788999999999999853 444566678999999999999865443333221 11238
Q ss_pred ccEEEcccCcCcccCCC-C-C----CCCCCCEEECcCCcccc----cCchhhhcCCCCCEEECcCCCCC
Q 041155 413 LEMLYLSSNEITGSVPD-L-G----GFSSLKELYLENNRLNG----FTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 413 L~~L~L~~N~l~g~ip~-~-~----~l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
|++|++++|.+++.... + . ..+.|+.|++++|.++. .+...+..+++|+++++++|.++
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 99999999999863222 2 1 24799999999999982 34456677899999999999874
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=6e-18 Score=143.08 Aligned_cols=111 Identities=28% Similarity=0.406 Sum_probs=69.3
Q ss_pred hhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCC
Q 041155 183 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSS 262 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~ 262 (471)
+.++.+.+.|.|++|+++ .+|..+..+.+|+.|++.+|+++ .+|.+++.+++|++|+++-|++...+ ..++.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lp--rgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILP--RGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCc--cccCCCch
Confidence 446677777888888887 46777888888888888888877 67877777777777777777643322 23555555
Q ss_pred CcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCC
Q 041155 263 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHL 299 (471)
Q Consensus 263 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l 299 (471)
|++||+.+|++.... +|..+..++.|+.|+++.|.|
T Consensus 104 levldltynnl~e~~-lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENS-LPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred hhhhhcccccccccc-CCcchhHHHHHHHHHhcCCCc
Confidence 666665555554431 122333333444444444443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=5.3e-18 Score=143.43 Aligned_cols=162 Identities=26% Similarity=0.426 Sum_probs=74.1
Q ss_pred CCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCC
Q 041155 211 LTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLT 290 (471)
Q Consensus 211 l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 290 (471)
+.+++.|.|+.|+++ .+|+.|+.+.+|+.|++.+|++...+ ..++.+++|+.|+++.|++.-.| ..+|.+|.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp--~~issl~klr~lnvgmnrl~~lp---rgfgs~p~le 105 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMNRLNILP---RGFGSFPALE 105 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcC--hhhhhchhhhheecchhhhhcCc---cccCCCchhh
Confidence 444444455555554 44555555555555555555543332 23444555555555555444432 2445555555
Q ss_pred EEEecCCCCCC-CCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcC
Q 041155 291 TLYLYRCHLPP-IVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEF 369 (471)
Q Consensus 291 ~L~l~~n~l~g-~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l 369 (471)
+|++.+|++.. .+|..|..+ +.|+.|.+++|.|. .+|+.++++++|+.|.+..|.+
T Consensus 106 vldltynnl~e~~lpgnff~m---~tlralyl~dndfe--------------------~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYM---TTLRALYLGDNDFE--------------------ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hhhccccccccccCCcchhHH---HHHHHHHhcCCCcc--------------------cCChhhhhhcceeEEeeccCch
Confidence 55555554433 233333333 44444444444443 3444444444444444444444
Q ss_pred cccCChhccCCCCCCEEeCcCCcCcccCcHHhhh
Q 041155 370 EGGVPDFFANMCSLTMLNISDNKLRGHFPELIQN 403 (471)
Q Consensus 370 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 403 (471)
- ++|..++.++.|+.|.+.+|+++ .+|..+++
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 4 34444444444444444444444 34444433
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=2.7e-15 Score=159.24 Aligned_cols=149 Identities=30% Similarity=0.478 Sum_probs=107.6
Q ss_pred ccHHhHHHHHHhhhhCCCCCCCCCCCCCCCCCCCCc----cccceeeCC--CCC--cEEEEEeCCCCCCCCCccccchhh
Q 041155 4 CIDEEREAVLTFKESLVDESGVLSSWGPEDEKRDCC----KWTGVGCSN--RTG--HVIKLEIQPIDFDSFPLRVFPILL 75 (471)
Q Consensus 4 c~~~e~~aLl~~k~~~~~~~~~l~sW~~~~~~~~~C----~W~GV~C~~--~~g--~V~~L~L~~~~l~~~~~~~~~~~~ 75 (471)
+.++|.+||++||+++.++.. .+|.. ..|| .|.||+|+. .++ +|+.|+|+++++
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L------------ 430 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL------------ 430 (623)
T ss_pred cCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCc------------
Confidence 456899999999999976642 48953 2342 799999952 222 577887765433
Q ss_pred hhHHhhhHHHHHHHHHHHHHhhcCccccCCCCccCCCHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCCCCCcceeeeCC
Q 041155 76 IITMTVGIRLLQQLFLLVILLQLEPRVADSNNMIRCIDEEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSN 155 (471)
Q Consensus 76 ~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~g~~p~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 155 (471)
.|.+|.++..
T Consensus 431 ---------------------------------~g~ip~~i~~------------------------------------- 440 (623)
T PLN03150 431 ---------------------------------RGFIPNDISK------------------------------------- 440 (623)
T ss_pred ---------------------------------cccCCHHHhC-------------------------------------
Confidence 3344543221
Q ss_pred CCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCC
Q 041155 156 RTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNL 235 (471)
Q Consensus 156 ~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l 235 (471)
..+|+.|+|++ |.+.|.+|+.++.+++|++|+|++|.++|. +|..++++++|++|+|++|.++|.+|..+...
T Consensus 441 -L~~L~~L~Ls~-----N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 441 -LRHLQSINLSG-----NSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred -CCCCCEEECCC-----CcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 13477788887 678888888888888888888888888886 88888888888888888888888888877653
Q ss_pred -CCCCEEEccCCC
Q 041155 236 -SALQHLDLSLNH 247 (471)
Q Consensus 236 -~~L~~L~L~~n~ 247 (471)
.++..+++.+|.
T Consensus 514 ~~~~~~l~~~~N~ 526 (623)
T PLN03150 514 LLHRASFNFTDNA 526 (623)
T ss_pred cccCceEEecCCc
Confidence 356667777665
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-17 Score=158.21 Aligned_cols=88 Identities=27% Similarity=0.391 Sum_probs=44.3
Q ss_pred ccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhh
Q 041155 377 FANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIG 455 (471)
Q Consensus 377 l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~ 455 (471)
|..+++|+.|+|++|++++.-+.++.... .+++|.|..|++.-.-.. +.++..|+.|+|.+|+++-.-|..|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a------~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAA------ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchh------hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 44455555555555555544444444444 455555555554422222 44455555555555555555555555
Q ss_pred cCCCCCEEECcCCCC
Q 041155 456 QMSKLRTLSLNGNSL 470 (471)
Q Consensus 456 ~l~~L~~L~Ls~N~l 470 (471)
.+.+|..|+|-.|+|
T Consensus 344 ~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPF 358 (498)
T ss_pred ccceeeeeehccCcc
Confidence 555555555555543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=4.9e-17 Score=154.05 Aligned_cols=269 Identities=27% Similarity=0.298 Sum_probs=159.7
Q ss_pred eEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCC-CcccCCCC-ccccCCCC
Q 041155 160 VIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF-AEFEGPIP-SHLGNLSA 237 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~-n~l~g~ip-~~l~~l~~ 237 (471)
.+.++|.. |.++..-|.+|+.+++||.|||+.|.++.. -|..|..++.|..|-+.+ |+|+ .+| ..|+++..
T Consensus 69 tveirLdq-----N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQ-----NQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred ceEEEecc-----CCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 45566655 455533344566677777777777776654 566666666665555444 6666 444 34566666
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCC------------CCcc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP------------IVPL 305 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g------------~~p~ 305 (471)
|+.|.+.-|++.-.. ...+..+++|..|.+.+|.+..... ..+..+..++.+.+..|.+-. ..|.
T Consensus 142 lqrLllNan~i~Cir-~~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 142 LQRLLLNANHINCIR-QDALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHhcChhhhcchh-HHHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 666666666643322 2346666666666666666654421 145555666666666665321 0111
Q ss_pred cccCCCCCCcccEEECCCCcCCCccccc---cccEE---EcccccCccCcC-ccccCCCCCCEEeCcCCcCcccCChhcc
Q 041155 306 SLSNLNYSTSLQFLELSENNLTNSIYPY---NLVLL---GLDSNLLRGSIP-VAFKHMVSLSFLGLASNEFEGGVPDFFA 378 (471)
Q Consensus 306 ~l~~l~~~~~L~~L~Ls~N~l~g~ip~~---~L~~L---~Ls~n~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 378 (471)
.++.. .......+.++++...-+.. .++.+ ..+.+...+.-| ..|..+++|+.|+|++|++++.-+.+|.
T Consensus 219 etsga---rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 219 ETSGA---RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred hcccc---eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 11111 11111111111111100000 11111 112222333444 3578889999999999999988888899
Q ss_pred CCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCccc
Q 041155 379 NMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLN 447 (471)
Q Consensus 379 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~ 447 (471)
.+..++.|.|..|++...--..+.++. .|+.|+|.+|+++-..|. |..+..|..|++-.|.+.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls------~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLS------GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccc------cceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999999999999998754444555565 799999999999988887 888889999998888764
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=2.9e-12 Score=136.22 Aligned_cols=154 Identities=31% Similarity=0.435 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCCCCCcceeeeCCC--C--CceEEEEeCCCCCCCCCcccccchhhhC
Q 041155 110 RCIDEEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSNR--T--GHVIKLEIQPIDFGSFPLRGTISPALLQ 185 (471)
Q Consensus 110 g~~p~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~--~--~~l~~L~L~~~~l~~n~l~g~ip~~l~~ 185 (471)
...|.+..+|..++..+..+.. .+|....-....|.|.|+.|... . ..++.|+|++ |.+.|.+|+.++.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n~L~g~ip~~i~~ 440 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----QGLRGFIPNDISK 440 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC-----CCccccCCHHHhC
Confidence 4567788899999876643221 25642000001137999999531 1 2488899888 7899999999999
Q ss_pred CCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcC-CCCCc
Q 041155 186 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSH-LSSLT 264 (471)
Q Consensus 186 l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~-l~~L~ 264 (471)
+++|++|+|++|.++|. +|..++.+++|++|+|++|+++|.+|+.++++++|++|+|++|.+.... +..++. ..++.
T Consensus 441 L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i-P~~l~~~~~~~~ 518 (623)
T PLN03150 441 LRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV-PAALGGRLLHRA 518 (623)
T ss_pred CCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC-ChHHhhccccCc
Confidence 99999999999999997 9999999999999999999999999999999999999888888754322 122332 23445
Q ss_pred EEEcCCcc
Q 041155 265 YLDLGSNN 272 (471)
Q Consensus 265 ~L~Ls~n~ 272 (471)
.+++.+|.
T Consensus 519 ~l~~~~N~ 526 (623)
T PLN03150 519 SFNFTDNA 526 (623)
T ss_pred eEEecCCc
Confidence 55555554
No 25
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.29 E-value=3.1e-12 Score=85.35 Aligned_cols=42 Identities=52% Similarity=1.050 Sum_probs=30.9
Q ss_pred cHHhHHHHHHhhhhCC-CCCCCCCCCCCCCCCCCCccccceeeC
Q 041155 5 IDEEREAVLTFKESLV-DESGVLSSWGPEDEKRDCCKWTGVGCS 47 (471)
Q Consensus 5 ~~~e~~aLl~~k~~~~-~~~~~l~sW~~~~~~~~~C~W~GV~C~ 47 (471)
.++|++||++||+++. +|.+.+.+|.... ..+||+|.||+||
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 3689999999999998 5778999998642 2699999999996
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=2.7e-13 Score=134.35 Aligned_cols=199 Identities=29% Similarity=0.388 Sum_probs=124.9
Q ss_pred CCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCc
Q 041155 185 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLT 264 (471)
Q Consensus 185 ~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 264 (471)
.++--...|++.|++. .+|..+..+..|+.+.|..|.+. .||..++++..|.+||++.|++...+. .+..+ -|+
T Consensus 73 ~ltdt~~aDlsrNR~~--elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~--~lC~l-pLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS--ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPD--GLCDL-PLK 146 (722)
T ss_pred cccchhhhhccccccc--cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCCh--hhhcC-cce
Confidence 3445566777888877 47777777777777778777776 677777777777777777777544431 13333 266
Q ss_pred EEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEccccc
Q 041155 265 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNL 344 (471)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~ 344 (471)
.|-+++|+++..+ ..++-.+.|..|+.+.|.+.. +|..++.+ .+|+.|.+..|++.
T Consensus 147 vli~sNNkl~~lp---~~ig~~~tl~~ld~s~nei~s-lpsql~~l---~slr~l~vrRn~l~----------------- 202 (722)
T KOG0532|consen 147 VLIVSNNKLTSLP---EEIGLLPTLAHLDVSKNEIQS-LPSQLGYL---TSLRDLNVRRNHLE----------------- 202 (722)
T ss_pred eEEEecCccccCC---cccccchhHHHhhhhhhhhhh-chHHhhhH---HHHHHHHHhhhhhh-----------------
Confidence 6666666666553 255555566666666665543 44445555 55555555555443
Q ss_pred CccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCc
Q 041155 345 LRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNE 422 (471)
Q Consensus 345 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~ 422 (471)
.+|..+..+ .|..||+|.|+++ .||..|.+|+.|++|-|.+|.+. ..|..|+.... ..-.++|+..-++
T Consensus 203 ---~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk---VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 203 ---DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK---VHIFKYLSTQACQ 271 (722)
T ss_pred ---hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc---eeeeeeecchhcc
Confidence 466666633 4777788888777 67777777777888888777777 55666654331 0123555555553
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1.3e-11 Score=124.99 Aligned_cols=185 Identities=38% Similarity=0.520 Sum_probs=125.3
Q ss_pred hhhCCCCCCEEeCCCCCCCCCCcCccCCCCC-CCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCC
Q 041155 182 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLT-KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHL 260 (471)
Q Consensus 182 ~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~-~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l 260 (471)
.+..++.++.|++.+|.++ .+|.....++ +|+.|++++|++. .+|..+..+++|+.|++++|++...+. ..+..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~--~~~~~ 185 (394)
T COG4886 111 ELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPK--LLSNL 185 (394)
T ss_pred hhhcccceeEEecCCcccc--cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhh--hhhhh
Confidence 3455677888888888887 4777777774 8888888888887 677777888888888888888655542 12267
Q ss_pred CCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEc
Q 041155 261 SSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGL 340 (471)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~L 340 (471)
++|+.|++++|++...+. .++....|+++.+++|.... ++..+.++ .++..+.+.+|++.
T Consensus 186 ~~L~~L~ls~N~i~~l~~---~~~~~~~L~~l~~~~N~~~~-~~~~~~~~---~~l~~l~l~~n~~~------------- 245 (394)
T COG4886 186 SNLNNLDLSGNKISDLPP---EIELLSALEELDLSNNSIIE-LLSSLSNL---KNLSGLELSNNKLE------------- 245 (394)
T ss_pred hhhhheeccCCccccCch---hhhhhhhhhhhhhcCCccee-cchhhhhc---ccccccccCCceee-------------
Confidence 778888888888776642 33455567777777775222 33344555 55666666666544
Q ss_pred ccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHH
Q 041155 341 DSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPEL 400 (471)
Q Consensus 341 s~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 400 (471)
.++..++.++.++.|++++|.++ .++. ++.+.+++.|++++|.+....|..
T Consensus 246 -------~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 246 -------DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -------eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 22555667777777777777777 4444 677777777777777777555443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=5.4e-13 Score=132.22 Aligned_cols=152 Identities=32% Similarity=0.447 Sum_probs=101.5
Q ss_pred CCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEe
Q 041155 287 PLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLG 363 (471)
Q Consensus 287 ~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~ 363 (471)
..|+.+.++.|.+-- +|..++++ ..|+++|++.|+++-..+.. -|+.|-+++|+++ .+|..++...+|..||
T Consensus 98 ~~Le~liLy~n~~r~-ip~~i~~L---~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 98 VSLESLILYHNCIRT-IPEAICNL---EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHhcccee-cchhhhhh---hHHHHhhhccchhhcCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhh
Confidence 334444444444332 34444444 44555555555444322211 4555556666665 6778888788888888
Q ss_pred CcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECc
Q 041155 364 LASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLE 442 (471)
Q Consensus 364 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls 442 (471)
.+.|.+. .+|..++.+.+|+.|.+..|++. .+|++++.++ |..||++.|+++ .||. |.+|+.|++|-|.
T Consensus 173 ~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------Li~lDfScNkis-~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 173 VSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------eeeeecccCcee-ecchhhhhhhhheeeeec
Confidence 8888887 67888888888888888888888 6777777665 888888888887 6777 8888888888888
Q ss_pred CCcccccCchhh
Q 041155 443 NNRLNGFTNNSI 454 (471)
Q Consensus 443 ~N~l~g~ip~~l 454 (471)
+|.+... |..+
T Consensus 243 nNPLqSP-PAqI 253 (722)
T KOG0532|consen 243 NNPLQSP-PAQI 253 (722)
T ss_pred cCCCCCC-hHHH
Confidence 8888743 4444
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=3e-11 Score=122.25 Aligned_cols=200 Identities=34% Similarity=0.456 Sum_probs=143.6
Q ss_pred eEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCC-CCcEEEcCCccCCCCCchhhhhCCCCCCCEEEe
Q 041155 216 YLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLS-SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYL 294 (471)
Q Consensus 216 ~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l 294 (471)
.+++..|.+... +..+..++.++.|++.+|.+...+. ....+. +|+.|++++|.+...+ ..++.+++|+.|++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~--~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNKIESLP---SPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCcc--ccccchhhcccccccccchhhhh---hhhhcccccccccc
Confidence 577777776433 2344556778888888887666553 244443 7888888888776642 35677777777777
Q ss_pred cCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCC
Q 041155 295 YRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVP 374 (471)
Q Consensus 295 ~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 374 (471)
+.|+++.. |...+.. +.|+.|++++|+++ .+|..+.....|+++++++|... .++
T Consensus 171 ~~N~l~~l-~~~~~~~---~~L~~L~ls~N~i~--------------------~l~~~~~~~~~L~~l~~~~N~~~-~~~ 225 (394)
T COG4886 171 SFNDLSDL-PKLLSNL---SNLNNLDLSGNKIS--------------------DLPPEIELLSALEELDLSNNSII-ELL 225 (394)
T ss_pred CCchhhhh-hhhhhhh---hhhhheeccCCccc--------------------cCchhhhhhhhhhhhhhcCCcce-ecc
Confidence 77777663 3333234 56666666666655 67776667777999999999644 477
Q ss_pred hhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCchhh
Q 041155 375 DFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSI 454 (471)
Q Consensus 375 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip~~l 454 (471)
..+.++.++..+.+.+|++. .++..++.++ +++.|++++|.++. ++.++.+.+++.|++++|.++...|...
T Consensus 226 ~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~------~l~~L~~s~n~i~~-i~~~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 226 SSLSNLKNLSGLELSNNKLE-DLPESIGNLS------NLETLDLSNNQISS-ISSLGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhhhhcccccccccCCceee-eccchhcccc------ccceeccccccccc-cccccccCccCEEeccCccccccchhhh
Confidence 77888999999999999887 3466777776 79999999999884 4448888999999999999987776543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.1e-11 Score=114.08 Aligned_cols=132 Identities=30% Similarity=0.387 Sum_probs=91.5
Q ss_pred ccccc-cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCC
Q 041155 329 SIYPY-NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSG 407 (471)
Q Consensus 329 ~ip~~-~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~ 407 (471)
.+|.| .|+.+|||.|.++ .|..++.-.+.++.|++|+|.+. .+- .+..+++|+.||||+|.++ .+-.|-.++.
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG-- 352 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLG-- 352 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhc--
Confidence 34444 5666777776665 56667777788888888888887 232 3677788888888888877 4444545555
Q ss_pred CCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccC-chhhhcCCCCCEEECcCCCCC
Q 041155 408 CTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFT-NNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 408 ~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+++.|.|+.|.+. .+..++.+-+|..||+++|++...- -..+|++|-|+.+.|.+|+++
T Consensus 353 ----NIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 ----NIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ----CEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7888888888765 3334667777888888888876432 235778888888888888764
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=2.5e-11 Score=114.21 Aligned_cols=251 Identities=27% Similarity=0.298 Sum_probs=144.9
Q ss_pred cchhhhCCCCCCEEeCCCCCCCCC---CcCccCCCCCCCCeEeCCCCcccCC----CCcc-------ccCCCCCCEEEcc
Q 041155 179 ISPALLQLHRLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEFEGP----IPSH-------LGNLSALQHLDLS 244 (471)
Q Consensus 179 ip~~l~~l~~L~~L~Ls~n~l~g~---~ip~~l~~l~~L~~L~Ls~n~l~g~----ip~~-------l~~l~~L~~L~L~ 244 (471)
+-+.+-.+..+++++|++|.|.-. .+-..+.+.++|+..+++. -|+|. +|+. +..+++|++||||
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 344566788999999999988633 1334456778888888874 35553 4543 3355677777777
Q ss_pred CCCCCCCCCh---hhhcCCCCCcEEEcCCccCCCCC--c---------hhhhhCCCCCCCEEEecCCCCCCCCcccccC-
Q 041155 245 LNHLFSVGNL---DWLSHLSSLTYLDLGSNNLSRST--D---------WLQVVGNLPLLTTLYLYRCHLPPIVPLSLSN- 309 (471)
Q Consensus 245 ~n~~~~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~--~---------~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~- 309 (471)
+|-+.+.... ..+..+..|++|.|.+|.+.-.- . .....++-++|+++..++|++.......++.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 7776544332 23556677777777777654321 0 0112223344555555555443321111110
Q ss_pred CCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCccc----CChhccCCCCCCE
Q 041155 310 LNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG----VPDFFANMCSLTM 385 (471)
Q Consensus 310 l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~ 385 (471)
++..+.|+.+.++.|.+.-.- . ..+-..+..+++|+.|||.+|.|+-. +...+..+++|+.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG--------------~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEG--------------V-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred HHhccccceEEEecccccCch--------------h-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 111134444444444332100 0 01234567788888888888888742 3345666778888
Q ss_pred EeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc----CCC-CCCCCCCCEEECcCCcc
Q 041155 386 LNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS----VPD-LGGFSSLKELYLENNRL 446 (471)
Q Consensus 386 L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~----ip~-~~~l~~L~~L~Ls~N~l 446 (471)
|++++|.+...-...+..--.. ..++|+++.+.+|.++-. +-. +...+.|+.|+|++|++
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~-~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKE-SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhc-cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8888888876544444332111 134788888888887632 112 55577888888888888
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3e-11 Score=116.58 Aligned_cols=157 Identities=27% Similarity=0.220 Sum_probs=93.4
Q ss_pred CCCCCCCCeEeCCCCcccCCCC--ccccCCCCCCEEEccCCCCCCCCCh-hhhcCCCCCcEEEcCCccCCCCCchhhhhC
Q 041155 208 IGSLTKLSYLDLSFAEFEGPIP--SHLGNLSALQHLDLSLNHLFSVGNL-DWLSHLSSLTYLDLGSNNLSRSTDWLQVVG 284 (471)
Q Consensus 208 l~~l~~L~~L~Ls~n~l~g~ip--~~l~~l~~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 284 (471)
=.++.+|+...|.+.... .++ .....|++++.|||+.|-+...... .....+++|+.|+++.|++.-..+ ...-.
T Consensus 117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTL 194 (505)
T ss_pred hhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchh
Confidence 357788999999888765 333 2456788888999988874333221 335678888888888888765522 11233
Q ss_pred CCCCCCEEEecCCCCCCC-CcccccCCCCCCcccEEECCCCcCCCc--cccc---cccEEEcccccCccCcC--ccccCC
Q 041155 285 NLPLLTTLYLYRCHLPPI-VPLSLSNLNYSTSLQFLELSENNLTNS--IYPY---NLVLLGLDSNLLRGSIP--VAFKHM 356 (471)
Q Consensus 285 ~l~~L~~L~l~~n~l~g~-~p~~l~~l~~~~~L~~L~Ls~N~l~g~--ip~~---~L~~L~Ls~n~l~g~ip--~~l~~l 356 (471)
.++.|+.|.++.|.++-. +...+..+ ++|+.|+|..|...+. .+.. .|+.|||++|++-. .+ ...+.+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~f---Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l 270 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTF---PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTL 270 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhC---CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccc
Confidence 567888888888887632 11222234 7888888888742111 1110 45555555555431 22 233445
Q ss_pred CCCCEEeCcCCcCc
Q 041155 357 VSLSFLGLASNEFE 370 (471)
Q Consensus 357 ~~L~~L~Ls~N~l~ 370 (471)
+.|+.|+++.+.+.
T Consensus 271 ~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIA 284 (505)
T ss_pred cchhhhhccccCcc
Confidence 55555555555544
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=3.5e-11 Score=113.17 Aligned_cols=238 Identities=23% Similarity=0.213 Sum_probs=148.9
Q ss_pred ceEEEEeCCCCCCCCCccc----ccchhhhCCCCCCEEeCCCCCCCCC---CcCcc-------CCCCCCCCeEeCCCCcc
Q 041155 159 HVIKLEIQPIDFGSFPLRG----TISPALLQLHRLTYLDLSLNNFSGS---PIPEF-------IGSLTKLSYLDLSFAEF 224 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g----~ip~~l~~l~~L~~L~Ls~n~l~g~---~ip~~-------l~~l~~L~~L~Ls~n~l 224 (471)
.++.++|++| .|.- .|.+.+.+.+.|+..++++ .|+|. .+|+. +..+++|++||||.|.|
T Consensus 31 s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 31 SLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred ceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 5889999994 4432 3456677888999999875 34553 24433 34678999999999998
Q ss_pred cCCCCcc----ccCCCCCCEEEccCCCCCCCCCh------------hhhcCCCCCcEEEcCCccCCCC--CchhhhhCCC
Q 041155 225 EGPIPSH----LGNLSALQHLDLSLNHLFSVGNL------------DWLSHLSSLTYLDLGSNNLSRS--TDWLQVVGNL 286 (471)
Q Consensus 225 ~g~ip~~----l~~l~~L~~L~L~~n~~~~~~~~------------~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l 286 (471)
.-..+.. +.+++.|++|.|.+|.+.+.... ..++.-+.|+++..+.|++... ..+...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 7555544 45789999999999986544321 1245567899999999998765 3456677788
Q ss_pred CCCCEEEecCCCCCCCCc-ccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCc
Q 041155 287 PLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLA 365 (471)
Q Consensus 287 ~~L~~L~l~~n~l~g~~p-~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls 365 (471)
+.|+.+.+..|.+...-- .....+.+++.|++|||.+|-|+-.... .+...+..+++|+.|+++
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~---------------~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV---------------ALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------------HHHHHhcccchheeeccc
Confidence 999999999998743211 1112233449999999999988732110 122334444555566666
Q ss_pred CCcCcccCChhc-----cCCCCCCEEeCcCCcCcccC----cHHhhhccCCCCcCCccEEEcccCcC
Q 041155 366 SNEFEGGVPDFF-----ANMCSLTMLNISDNKLRGHF----PELIQNLSSGCTKNSLEMLYLSSNEI 423 (471)
Q Consensus 366 ~N~l~g~ip~~l-----~~l~~L~~L~Ls~N~l~g~i----p~~l~~l~~~~~~~~L~~L~L~~N~l 423 (471)
+|.+...-...+ ...++|++|.+.+|.++-.- ...+...+ .|..|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~------dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP------DLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch------hhHHhcCCcccc
Confidence 555543221111 12455666666666655321 11122222 566666666665
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-11 Score=115.74 Aligned_cols=207 Identities=28% Similarity=0.272 Sum_probs=110.0
Q ss_pred hCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCC--CCccccCCCCCCEEEccCCCCCCCCChhhhcCCC
Q 041155 184 LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGP--IPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLS 261 (471)
Q Consensus 184 ~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~--ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 261 (471)
+++.+|+...|.+..+....+-.....|++++.|||+.|-|..- +-.-...+++|+.|+++.|++........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45556666666655554211112444566666666666655421 1122345566666666666632221111122455
Q ss_pred CCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcc--ccc----cc
Q 041155 262 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSI--YPY----NL 335 (471)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~i--p~~----~L 335 (471)
+|+.|.++.|.++.. ++...+..+|+|+.|++.+|...+.-......+ ..|+.|||++|++-..- +.. .|
T Consensus 198 ~lK~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~---~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWK-DVQWILLTFPSLEVLYLEANEIILIKATSTKIL---QTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHH-HHHHHHHhCCcHHHhhhhcccccceecchhhhh---hHHhhccccCCcccccccccccccccch
Confidence 666777777766632 223345566677777777664222111222223 56677777776654321 111 45
Q ss_pred cEEEcccccCccC-cCcc-----ccCCCCCCEEeCcCCcCcccCC--hhccCCCCCCEEeCcCCcCcc
Q 041155 336 VLLGLDSNLLRGS-IPVA-----FKHMVSLSFLGLASNEFEGGVP--DFFANMCSLTMLNISDNKLRG 395 (471)
Q Consensus 336 ~~L~Ls~n~l~g~-ip~~-----l~~l~~L~~L~Ls~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g 395 (471)
..|.++.+.+... +|+. ....++|++|++..|++. ..+ ..+..+++|+.|....|.++-
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 5555555555432 2322 345678999999999885 233 234556777778777787763
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.3e-10 Score=100.77 Aligned_cols=125 Identities=33% Similarity=0.374 Sum_probs=45.2
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhh-CCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccc-cCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALL-QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHL-GNLS 236 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~-~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l-~~l~ 236 (471)
++++|+|.+ |.++ .| +.++ .+.+|+.|++++|.++. ++ .+..+++|++|++++|.++ .+++.+ ..++
T Consensus 20 ~~~~L~L~~-----n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRG-----NQIS-TI-ENLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccc-----cccc-cc-cchhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 356677776 3443 12 2344 46677777777777763 33 4566777777777777776 454444 3567
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCc-hhhhhCCCCCCCEEEe
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTD-WLQVVGNLPLLTTLYL 294 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~l 294 (471)
+|++|++++|++........++.+++|++|++.+|.++..+. -...+..+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777777777776666655666777777777777777665422 1234556666666654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.3e-10 Score=99.10 Aligned_cols=128 Identities=32% Similarity=0.368 Sum_probs=48.6
Q ss_pred hhCCCCCCEEeCCCCCCCCCCcCccCC-CCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhh-cCC
Q 041155 183 LLQLHRLTYLDLSLNNFSGSPIPEFIG-SLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWL-SHL 260 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~g~~ip~~l~-~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l-~~l 260 (471)
+.+...+++|+|++|.++. | +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|++.... ..+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSIS--EGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C--HHHHHH-
T ss_pred ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccc--cchHHhC
Confidence 3455678899999998873 3 3455 5788999999999988 443 5777889999999999876654 223 357
Q ss_pred CCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc---ccccCCCCCCcccEEEC
Q 041155 261 SSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP---LSLSNLNYSTSLQFLEL 321 (471)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p---~~l~~l~~~~~L~~L~L 321 (471)
++|++|++++|++....+ ...+..+++|++|++.+|.++...- ..+..+ ++|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l---P~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL---PSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH----TT-SEETT
T ss_pred CcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHc---ChhheeCC
Confidence 889999999998877643 3567778888888888887764311 223445 77777774
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.7e-10 Score=117.40 Aligned_cols=109 Identities=32% Similarity=0.379 Sum_probs=50.7
Q ss_pred hhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCC
Q 041155 183 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSS 262 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~ 262 (471)
+..+++|++|++..|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|++.+|.+..... +..++.
T Consensus 91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG---LESLKS 163 (414)
T ss_pred cccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC---Cccchh
Confidence 4445555555555555552 232244455555555555555422 123344445555555555433332 333455
Q ss_pred CcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCC
Q 041155 263 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 300 (471)
Q Consensus 263 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~ 300 (471)
|+.+++++|.+...... . ...+.+++.+++.+|.+.
T Consensus 164 L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchh
Confidence 55555555555443210 0 244445555555555443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=1e-08 Score=111.87 Aligned_cols=111 Identities=35% Similarity=0.379 Sum_probs=74.4
Q ss_pred hhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCC
Q 041155 182 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLS 261 (471)
Q Consensus 182 ~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 261 (471)
.|..++.|++|||++|.=-+. +|+.++++-+||+|+++.+.++ .+|..+.+++.|.+|++..+...... +.....++
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~ 642 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQ 642 (889)
T ss_pred HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcc
Confidence 355688888888888654443 8888888888888888888887 78888888888888888877632222 12345578
Q ss_pred CCcEEEcCCccCCCCCchhhhhCCCCCCCEEEec
Q 041155 262 SLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLY 295 (471)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~ 295 (471)
+|++|.+..-...........+.++..|+.+...
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 8888887665533332223344555555555543
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=6.3e-10 Score=102.69 Aligned_cols=139 Identities=29% Similarity=0.302 Sum_probs=91.4
Q ss_pred cccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhh
Q 041155 177 GTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDW 256 (471)
Q Consensus 177 g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~ 256 (471)
|..-..+-....|+.+|||+|.++ .|-+++.-.+.++.|++++|.+. .+ ..+..+++|+.|||++|.+.... .|
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~--Gw 347 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECV--GW 347 (490)
T ss_pred CceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhh--hh
Confidence 333334445566777888888777 36666666777888888888776 33 33677777888888877755444 34
Q ss_pred hcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCC-cccccCCCCCCcccEEECCCCcCCC
Q 041155 257 LSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV-PLSLSNLNYSTSLQFLELSENNLTN 328 (471)
Q Consensus 257 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~-p~~l~~l~~~~~L~~L~Ls~N~l~g 328 (471)
-.++-+.+.|.++.|.+... ..++++-+|..|++.+|++...- -..++++ +.|+.+.|.+|.+.+
T Consensus 348 h~KLGNIKtL~La~N~iE~L----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L---PCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETL----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL---PCLETLRLTGNPLAG 413 (490)
T ss_pred HhhhcCEeeeehhhhhHhhh----hhhHhhhhheeccccccchhhHHHhcccccc---cHHHHHhhcCCCccc
Confidence 45666777777777766543 35666777777777777765421 1345566 777777777777665
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.1e-08 Score=74.12 Aligned_cols=59 Identities=36% Similarity=0.554 Sum_probs=49.5
Q ss_pred CccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 412 SLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 412 ~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+|++|++++|+++...+. +..+++|++|++++|+++...|..+..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 688888888888866555 88888899999999988877777888899999999988875
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.4e-09 Score=110.62 Aligned_cols=244 Identities=29% Similarity=0.321 Sum_probs=175.9
Q ss_pred hCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCC
Q 041155 184 LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSL 263 (471)
Q Consensus 184 ~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 263 (471)
..+..++.+++..|.+.- +-..+..+++|+.|++..|.+. .+...+..+++|++|++++|.+..... +..++.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLL 142 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc---hhhccch
Confidence 356677777889988873 4455788999999999999998 455547889999999999999877764 7777889
Q ss_pred cEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcccc---ccccEEEc
Q 041155 264 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYP---YNLVLLGL 340 (471)
Q Consensus 264 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~---~~L~~L~L 340 (471)
+.|++++|.+.... .+..++.|+.+++++|.+...-+.....+ .+++.+++.+|.+.-.-.. ..+..+++
T Consensus 143 ~~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~~~~~~---~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 143 KELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIENDELSEL---ISLEELDLGGNSIREIEGLDLLKKLVLLSL 215 (414)
T ss_pred hhheeccCcchhcc----CCccchhhhcccCCcchhhhhhhhhhhhc---cchHHHhccCCchhcccchHHHHHHHHhhc
Confidence 99999999998874 45568999999999999887544103455 8899999999987643222 14555677
Q ss_pred ccccCccCcCccccCCC--CCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEc
Q 041155 341 DSNLLRGSIPVAFKHMV--SLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYL 418 (471)
Q Consensus 341 s~n~l~g~ip~~l~~l~--~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L 418 (471)
..|.++-.-+ +..+. +|+.+++++|++. .++..+..+..+..|++..|++...-. +.... .+..+..
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~------~~~~~~~ 284 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLP------KLSELWL 284 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccc------hHHHhcc
Confidence 7887763222 22222 3889999999988 454667778889999999998874321 11222 4666666
Q ss_pred ccCcCccc---CCC--CCCCCCCCEEECcCCcccccCc
Q 041155 419 SSNEITGS---VPD--LGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 419 ~~N~l~g~---ip~--~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
..|.+... ... .+..+.++...+..|......+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 285 NDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred CcchhcchhhhhccccccccccccccccccCccccccc
Confidence 66665532 111 5567788888888887776554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=6.7e-08 Score=105.62 Aligned_cols=157 Identities=25% Similarity=0.291 Sum_probs=103.9
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS 236 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~ 236 (471)
.+.+++|||++ |.=-+.+|..++++-+||||++++..+. .+|..+++++.|.+|++..+.....+|..+..++
T Consensus 570 m~~LrVLDLs~-----~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 570 LPLLRVLDLSG-----NSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred CcceEEEECCC-----CCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 46788999997 4445789999999999999999999998 5999999999999999999886656677677799
Q ss_pred CCCEEEccCCCC-CCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCC----EEEecCCCCCCCCcccccCCC
Q 041155 237 ALQHLDLSLNHL-FSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLT----TLYLYRCHLPPIVPLSLSNLN 311 (471)
Q Consensus 237 ~L~~L~L~~n~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~----~L~l~~n~l~g~~p~~l~~l~ 311 (471)
+|++|.+..... ........+.++.+|+.+........ +...+..+++|. .+.+.++.. ...+..++.+
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~----~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l- 716 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL----LLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSL- 716 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhheeecchhH----hHhhhhhhHHHHHHhHhhhhccccc-ceeecccccc-
Confidence 999999987651 11112234556666666665433221 111222222222 222222221 1223344555
Q ss_pred CCCcccEEECCCCcCCC
Q 041155 312 YSTSLQFLELSENNLTN 328 (471)
Q Consensus 312 ~~~~L~~L~Ls~N~l~g 328 (471)
.+|+.|.+.++....
T Consensus 717 --~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 717 --GNLEELSILDCGISE 731 (889)
T ss_pred --cCcceEEEEcCCCch
Confidence 677777777776653
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=1.3e-09 Score=111.32 Aligned_cols=175 Identities=27% Similarity=0.342 Sum_probs=123.7
Q ss_pred hhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcC----------CCcc---ccc-cccEEEcccccC
Q 041155 280 LQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNL----------TNSI---YPY-NLVLLGLDSNLL 345 (471)
Q Consensus 280 ~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l----------~g~i---p~~-~L~~L~Ls~n~l 345 (471)
|-.+..+.+|++|.+.++.+... ..+..+. ..|+.|-- .|.+ -|.+ |.| .|...+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr--~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELR--HQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHH--Hhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH
Confidence 34677788999999999987541 1111110 12222211 1111 1222 334 788888999988
Q ss_pred ccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcc
Q 041155 346 RGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITG 425 (471)
Q Consensus 346 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g 425 (471)
. .+-.++.-++.++.|+|+.|+++.. +.+..++.|++|||++|.+. .+|.. +.- .| .|+.|.+++|.++
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l-~~~-gc----~L~~L~lrnN~l~- 245 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL-SMV-GC----KLQLLNLRNNALT- 245 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc-chh-hh----hheeeeecccHHH-
Confidence 7 5666777889999999999999853 37888999999999999998 56642 211 11 5999999999887
Q ss_pred cCCCCCCCCCCCEEECcCCcccccCc-hhhhcCCCCCEEECcCCCC
Q 041155 426 SVPDLGGFSSLKELYLENNRLNGFTN-NSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 426 ~ip~~~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l 470 (471)
.+-.+.++++|+.||++.|-+.+.-- .-++.+..|+.|.|.+|++
T Consensus 246 tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 45558899999999999998886431 2356778899999999986
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=7e-08 Score=69.80 Aligned_cols=59 Identities=41% Similarity=0.572 Sum_probs=30.5
Q ss_pred CCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcc
Q 041155 382 SLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRL 446 (471)
Q Consensus 382 ~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l 446 (471)
+|++|++++|+++...+..+..++ +|++|++++|+++...|. +..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~------~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLP------NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGT------TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCC------CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 445555555555533333444444 555555555555544444 55555555555555543
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=1.2e-07 Score=86.72 Aligned_cols=247 Identities=24% Similarity=0.177 Sum_probs=131.4
Q ss_pred hhhhCCCCCCEEeCCCCCCCCCCcCc----cCCCCCCCCeEeCCCCcccCC----CCc-------cccCCCCCCEEEccC
Q 041155 181 PALLQLHRLTYLDLSLNNFSGSPIPE----FIGSLTKLSYLDLSFAEFEGP----IPS-------HLGNLSALQHLDLSL 245 (471)
Q Consensus 181 ~~l~~l~~L~~L~Ls~n~l~g~~ip~----~l~~l~~L~~L~Ls~n~l~g~----ip~-------~l~~l~~L~~L~L~~ 245 (471)
..+..+..++.++||+|.|... -.. .+.+-.+|+..+++.- |+|. +|+ .+.+|++|+..+|++
T Consensus 24 eel~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 3455678888999999988643 222 3445567777777643 3443 232 234566666666666
Q ss_pred CCCCCCCCh---hhhcCCCCCcEEEcCCccCCCCC--chh---------hhhCCCCCCCEEEecCCCCCCCCcc-cccCC
Q 041155 246 NHLFSVGNL---DWLSHLSSLTYLDLGSNNLSRST--DWL---------QVVGNLPLLTTLYLYRCHLPPIVPL-SLSNL 310 (471)
Q Consensus 246 n~~~~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~--~~~---------~~l~~l~~L~~L~l~~n~l~g~~p~-~l~~l 310 (471)
|.+.+..+. ..+++-+.|++|.+++|.+.-.. .+. ....+-|.|+++....|++...... +-..+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 664332221 33455566666666666543220 000 0112223444444444443221110 00011
Q ss_pred CCCCcccEEECCCCcCCCccccccccEEEcccccCccC-----cCccccCCCCCCEEeCcCCcCccc----CChhccCCC
Q 041155 311 NYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGS-----IPVAFKHMVSLSFLGLASNEFEGG----VPDFFANMC 381 (471)
Q Consensus 311 ~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~ 381 (471)
.+.. +++.+.+..|.+.-+ +-..+..+.+|+.|||..|.|+-. +...+..++
T Consensus 182 ~sh~-------------------~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 182 ESHE-------------------NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred Hhhc-------------------CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 1112 445555555544322 111234567888888888888732 223445667
Q ss_pred CCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccC------CC--CCCCCCCCEEECcCCcccc
Q 041155 382 SLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSV------PD--LGGFSSLKELYLENNRLNG 448 (471)
Q Consensus 382 ~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~i------p~--~~~l~~L~~L~Ls~N~l~g 448 (471)
.|+.|.+.+|-++..-...+-.-......++|+.|-..+|...|.+ |. -++++-|..|.+.+|++..
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 7888888888887654444332222222347888888888776533 22 3456667777777777763
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=6.8e-07 Score=82.94 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=47.4
Q ss_pred CCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccC--CCCCCCCCCCEEECcCCcccccCch------
Q 041155 381 CSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSV--PDLGGFSSLKELYLENNRLNGFTNN------ 452 (471)
Q Consensus 381 ~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~i--p~~~~l~~L~~L~Ls~N~l~g~ip~------ 452 (471)
+++..+-+..|.+...- ..+....++.+..|+|+.|++..-- -.+..++.|..|.+++|.+...+-.
T Consensus 199 pnv~sv~v~e~PlK~~s-----~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~l 273 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTES-----SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFL 273 (418)
T ss_pred ccchheeeecCcccchh-----hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEE
Confidence 45555666666544211 1111122336667888888875422 2277788888888888887654322
Q ss_pred hhhcCCCCCEEEC
Q 041155 453 SIGQMSKLRTLSL 465 (471)
Q Consensus 453 ~l~~l~~L~~L~L 465 (471)
-++.++++++|+=
T Consensus 274 lIaRL~~v~vLNG 286 (418)
T KOG2982|consen 274 LIARLTKVQVLNG 286 (418)
T ss_pred EEeeccceEEecC
Confidence 2577788877763
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.1e-08 Score=92.76 Aligned_cols=87 Identities=30% Similarity=0.277 Sum_probs=46.4
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCC-CChhhhcCCCCCcEE
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSV-GNLDWLSHLSSLTYL 266 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L 266 (471)
.|++|||+...++...+-..+..|.+|+.|.|.++++...|-..+++-.+|+.|+++.+.-... .....+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666666655432333445566666666666666666666666666666666665551111 111123445555555
Q ss_pred EcCCccCC
Q 041155 267 DLGSNNLS 274 (471)
Q Consensus 267 ~Ls~n~l~ 274 (471)
+++.+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=2.7e-07 Score=84.47 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=121.2
Q ss_pred ceEEEEeCCCCCCCCCccc----ccchhhhCCCCCCEEeCCCCCCCCC---CcC-------ccCCCCCCCCeEeCCCCcc
Q 041155 159 HVIKLEIQPIDFGSFPLRG----TISPALLQLHRLTYLDLSLNNFSGS---PIP-------EFIGSLTKLSYLDLSFAEF 224 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g----~ip~~l~~l~~L~~L~Ls~n~l~g~---~ip-------~~l~~l~~L~~L~Ls~n~l 224 (471)
.++.++|++| .+.. .+...+.+-.+|+..+++.- |+|. .+| ..+-+|++|+..+||.|.|
T Consensus 31 ~~~evdLSGN-----tigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 31 ELVEVDLSGN-----TIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred ceeEEeccCC-----cccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 4678899984 4443 34455667788888888764 3332 133 2355789999999999999
Q ss_pred cCCCCcc----ccCCCCCCEEEccCCCCCCCCCh------------hhhcCCCCCcEEEcCCccCCCCCc--hhhhhCCC
Q 041155 225 EGPIPSH----LGNLSALQHLDLSLNHLFSVGNL------------DWLSHLSSLTYLDLGSNNLSRSTD--WLQVVGNL 286 (471)
Q Consensus 225 ~g~ip~~----l~~l~~L~~L~L~~n~~~~~~~~------------~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~l 286 (471)
....|+. |++-+.|++|.+++|.+.+.... ...++-+.|++.....|++...+. +...+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 8777765 45678899999999986655421 123456789999999999876521 22333334
Q ss_pred CCCCEEEecCCCCCCC--CcccccCCCCCCcccEEECCCCcCCCc--------cccc-cccEEEcccccCcc
Q 041155 287 PLLTTLYLYRCHLPPI--VPLSLSNLNYSTSLQFLELSENNLTNS--------IYPY-NLVLLGLDSNLLRG 347 (471)
Q Consensus 287 ~~L~~L~l~~n~l~g~--~p~~l~~l~~~~~L~~L~Ls~N~l~g~--------ip~~-~L~~L~Ls~n~l~g 347 (471)
.+|+++.+..|.+.-. -.-.+-.+.++.+|+.||+..|-|+-. .|.| .|+.|.+..|.++.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 6899999999977432 111222334448999999999988732 2334 34566666555543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=4e-08 Score=100.71 Aligned_cols=118 Identities=32% Similarity=0.349 Sum_probs=91.3
Q ss_pred CCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCcc-ccCCCCCCEEEccCCCCCCC
Q 041155 173 FPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSH-LGNLSALQHLDLSLNHLFSV 251 (471)
Q Consensus 173 n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~-l~~l~~L~~L~L~~n~~~~~ 251 (471)
|.++ .+..++.-++.|+.|+|++|+++.. ..+..|++|++|||++|.+. .+|.- ...+ +|+.|.+++|.+...
T Consensus 174 N~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 174 NRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL 247 (1096)
T ss_pred hhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh
Confidence 5655 4556677788999999999999854 37888999999999999988 66642 2233 399999999986555
Q ss_pred CChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCC
Q 041155 252 GNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLP 300 (471)
Q Consensus 252 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~ 300 (471)
. .+.++.+|+.||+++|-+.+... ...+..+..|+.|+|.+|.+-
T Consensus 248 ~---gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 R---GIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h---hHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence 4 37889999999999999888744 345667778889999988764
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=3.4e-07 Score=75.52 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=27.8
Q ss_pred CcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHH
Q 041155 348 SIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPEL 400 (471)
Q Consensus 348 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 400 (471)
.+|.++..++.|+.|+++.|.+. ..|..+..+.++..||..+|... +||..
T Consensus 91 dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 91 DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 45555555555666666666555 34555555555555555555554 44433
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.6e-07 Score=82.63 Aligned_cols=157 Identities=26% Similarity=0.324 Sum_probs=76.9
Q ss_pred CceEEEEeCCCCCCCCCccc-ccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCc-ccCC-CCccccC
Q 041155 158 GHVIKLEIQPIDFGSFPLRG-TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE-FEGP-IPSHLGN 234 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g-~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~-l~g~-ip~~l~~ 234 (471)
.++++|||+.. .++- ++-.-+..|.+|+.|.+.++.+... |-..+.+-.+|+.|+|+.+. |+.. .---+.+
T Consensus 185 sRlq~lDLS~s-----~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNS-----VITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchh-----heeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 45777777763 2221 1222344556666666666666553 55555555566666665542 2211 0111345
Q ss_pred CCCCCEEEccCCCCCCCC----------------------------ChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCC
Q 041155 235 LSALQHLDLSLNHLFSVG----------------------------NLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNL 286 (471)
Q Consensus 235 l~~L~~L~L~~n~~~~~~----------------------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 286 (471)
|+.|..|+++.+...... ......++++|.+|||++|..-.. .....+.++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf 337 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKF 337 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhc
Confidence 555666666555522111 001124456666666666543322 234455566
Q ss_pred CCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCC
Q 041155 287 PLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSE 323 (471)
Q Consensus 287 ~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~ 323 (471)
+.|++|.++.|- +.+|..+-.+...++|.+||+.+
T Consensus 338 ~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 338 NYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred chheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 666666666552 34454444443335555555543
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=2.9e-06 Score=90.66 Aligned_cols=140 Identities=21% Similarity=0.196 Sum_probs=94.2
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhh-CCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALL-QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~-~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
++++||+++.. .+...=|..++ .++.|+.|.+++-.+....+-....++++|..||+|+++++ .+ ..++++++
T Consensus 123 nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~Lkn 196 (699)
T KOG3665|consen 123 NLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKN 196 (699)
T ss_pred hhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhcccc
Confidence 57778887732 22323344455 47888888888877754434455667888888888888877 33 67788888
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCch----hhhhCCCCCCCEEEecCCCCCCCCc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDW----LQVVGNLPLLTTLYLYRCHLPPIVP 304 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~l~~l~~L~~L~l~~n~l~g~~p 304 (471)
|++|.+.+=.+........+.++++|++||+|.......+.+ .+.-..+|+|+.||.++..+.+.+-
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 888888877665555555678888888888888766554321 1222346778888877776665443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.3e-05 Score=53.41 Aligned_cols=36 Identities=42% Similarity=0.616 Sum_probs=25.2
Q ss_pred CccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccc
Q 041155 412 SLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNG 448 (471)
Q Consensus 412 ~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g 448 (471)
+|++|++++|+++ .+|. ++++++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6777888888777 4555 7777788888888877763
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=2.4e-06 Score=79.35 Aligned_cols=238 Identities=21% Similarity=0.181 Sum_probs=114.7
Q ss_pred cccchhhhCCCCCCEEeCCCCCCCCCCcCccC-CCCCCCCeEeCCCCcccC--CCCccccCCCCCCEEEccCCCCCCCCC
Q 041155 177 GTISPALLQLHRLTYLDLSLNNFSGSPIPEFI-GSLTKLSYLDLSFAEFEG--PIPSHLGNLSALQHLDLSLNHLFSVGN 253 (471)
Q Consensus 177 g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l-~~l~~L~~L~Ls~n~l~g--~ip~~l~~l~~L~~L~L~~n~~~~~~~ 253 (471)
|-.+-.++....++.|.+.++.+.....-..| ...+.++.+||.+|.++. .|-.-+.+++.|++|+++.|.+.+.-
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I- 113 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI- 113 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-
Confidence 33333333444444555544444321111112 234566777777776652 23333445666666666666643221
Q ss_pred hhhh-cCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc--ccccCCCCCCcccEEECCCCcCCCcc
Q 041155 254 LDWL-SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP--LSLSNLNYSTSLQFLELSENNLTNSI 330 (471)
Q Consensus 254 ~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p--~~l~~l~~~~~L~~L~Ls~N~l~g~i 330 (471)
..+ ..+.+|++|-|.+..+.-.. .-..+..+|.+++|.++.|.+....- ..+... .+.++.+..-.|
T Consensus 114 -~~lp~p~~nl~~lVLNgT~L~w~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~--s~~v~tlh~~~c------ 183 (418)
T KOG2982|consen 114 -KSLPLPLKNLRVLVLNGTGLSWTQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW--STEVLTLHQLPC------ 183 (418)
T ss_pred -ccCcccccceEEEEEcCCCCChhh-hhhhhhcchhhhhhhhccchhhhhcccccccccc--chhhhhhhcCCc------
Confidence 111 23345666666555544321 01234455555555555552211000 000000 012222222211
Q ss_pred ccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccC-ChhccCCCCCCEEeCcCCcCccc-CcHHhhhccCCC
Q 041155 331 YPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGV-PDFFANMCSLTMLNISDNKLRGH-FPELIQNLSSGC 408 (471)
Q Consensus 331 p~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~~~ 408 (471)
+..+.++-|++. .-.+++..+-+..|.+...- -.....++.+..|+|+.|++..- --+.+..++
T Consensus 184 ----~~~~w~~~~~l~-------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~--- 249 (418)
T KOG2982|consen 184 ----LEQLWLNKNKLS-------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP--- 249 (418)
T ss_pred ----HHHHHHHHHhHH-------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc---
Confidence 111222222332 22356666777777654321 12344566777899999988732 123445555
Q ss_pred CcCCccEEEcccCcCcccC----CC---CCCCCCCCEEECc
Q 041155 409 TKNSLEMLYLSSNEITGSV----PD---LGGFSSLKELYLE 442 (471)
Q Consensus 409 ~~~~L~~L~L~~N~l~g~i----p~---~~~l~~L~~L~Ls 442 (471)
.|..|.+++|.+...+ +. ++.+++++.|+=+
T Consensus 250 ---~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 250 ---QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ---hhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 8999999999876543 33 6788888888744
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.1e-05 Score=53.85 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=19.4
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCccc
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFE 225 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~ 225 (471)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666555 25555555666666666655554
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=8.6e-07 Score=73.15 Aligned_cols=100 Identities=34% Similarity=0.466 Sum_probs=53.3
Q ss_pred cccEEECCCCcCCCcccc--------ccccEEEcccccCccCcCcccc-CCCCCCEEeCcCCcCcccCChhccCCCCCCE
Q 041155 315 SLQFLELSENNLTNSIYP--------YNLVLLGLDSNLLRGSIPVAFK-HMVSLSFLGLASNEFEGGVPDFFANMCSLTM 385 (471)
Q Consensus 315 ~L~~L~Ls~N~l~g~ip~--------~~L~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 385 (471)
.+..+||+.+.+-. ++. ..|+..+|++|.|. .+|+.|. ..+.++.|++++|.++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 34556666665431 111 14555566666665 3333332 3345566666666665 45666666666666
Q ss_pred EeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCc
Q 041155 386 LNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEIT 424 (471)
Q Consensus 386 L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~ 424 (471)
|+++.|.+. ..|..+..+. ++..|+..+|...
T Consensus 105 lNl~~N~l~-~~p~vi~~L~------~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLI------KLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHH------hHHHhcCCCCccc
Confidence 666666665 4445555444 5555555555544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00023 Score=70.75 Aligned_cols=78 Identities=10% Similarity=0.167 Sum_probs=43.2
Q ss_pred hhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCC-CCCCCChhhhcCC
Q 041155 182 ALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNH-LFSVGNLDWLSHL 260 (471)
Q Consensus 182 ~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~-~~~~~~~~~l~~l 260 (471)
.+..+.++++|++++|.++ .+|. + ..+|++|.++++.--..+|..+. ++|++|++++|. +... .
T Consensus 47 r~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL--------P 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL--------P 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc--------c
Confidence 3445677777777777666 3552 1 23577777766432235555442 467777777763 2111 1
Q ss_pred CCCcEEEcCCccCC
Q 041155 261 SSLTYLDLGSNNLS 274 (471)
Q Consensus 261 ~~L~~L~Ls~n~l~ 274 (471)
.+|+.|++..+...
T Consensus 112 ~sLe~L~L~~n~~~ 125 (426)
T PRK15386 112 ESVRSLEIKGSATD 125 (426)
T ss_pred cccceEEeCCCCCc
Confidence 34666666655443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=3.3e-05 Score=70.91 Aligned_cols=115 Identities=23% Similarity=0.196 Sum_probs=77.5
Q ss_pred cchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCC--cccCCCCccccCCCCCCEEEccCCCCCCCCChhh
Q 041155 179 ISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFA--EFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDW 256 (471)
Q Consensus 179 ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n--~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~ 256 (471)
+....-.+..|+.|++.+..++.. ..+-.|++|++|.++.| ..++.++.....+++|++|++++|++........
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 444444556667777666666522 34556788999999999 6666666666677999999999998765554455
Q ss_pred hcCCCCCcEEEcCCccCCCCCch-hhhhCCCCCCCEEEecC
Q 041155 257 LSHLSSLTYLDLGSNNLSRSTDW-LQVVGNLPLLTTLYLYR 296 (471)
Q Consensus 257 l~~l~~L~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~l~~ 296 (471)
+..+.+|..||+..|.-+...+. -..+.-+++|++|+-..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77788888888888876665221 22445567777776543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3e-05 Score=83.07 Aligned_cols=138 Identities=24% Similarity=0.252 Sum_probs=96.7
Q ss_pred CCCCCEEeCCCCCCCCCCcCccCC-CCCCCCeEeCCCCcccC-CCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCC
Q 041155 186 LHRLTYLDLSLNNFSGSPIPEFIG-SLTKLSYLDLSFAEFEG-PIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSL 263 (471)
Q Consensus 186 l~~L~~L~Ls~n~l~g~~ip~~l~-~l~~L~~L~Ls~n~l~g-~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 263 (471)
-.+|++||+++...-....|..++ .+|.|+.|.+.+-.+.. .+-.-..++++|..||+++.++... ..++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccH
Confidence 357999999886543333555565 47999999998876642 2223345789999999999986555 458889999
Q ss_pred cEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCC--cc----cccCCCCCCcccEEECCCCcCCCcc
Q 041155 264 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV--PL----SLSNLNYSTSLQFLELSENNLTNSI 330 (471)
Q Consensus 264 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~--p~----~l~~l~~~~~L~~L~Ls~N~l~g~i 330 (471)
++|.+.+=.+..... ...+.++++|++||+|........ .. .-..+ ++|+.||.|+..+.+.+
T Consensus 198 q~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L---peLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL---PELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccC---ccccEEecCCcchhHHH
Confidence 999888877766543 346788999999999987665432 11 11123 78888888877776543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00017 Score=71.57 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=29.9
Q ss_pred cCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCc-cCCCCCchhhhhCCCCCCCEEEecCC
Q 041155 233 GNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN-NLSRSTDWLQVVGNLPLLTTLYLYRC 297 (471)
Q Consensus 233 ~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~l~~n 297 (471)
..+.++++|++++|.+...+. + ..+|++|.++++ .++..+ ..+ .++|++|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---L--P~sLtsL~Lsnc~nLtsLP---~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---L--PNELTEITIENCNNLTTLP---GSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---C--CCCCcEEEccCCCCcccCC---chh--hhhhhheEccCc
Confidence 345677777777776544431 1 135777777653 333222 122 235677777766
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00013 Score=64.55 Aligned_cols=108 Identities=27% Similarity=0.338 Sum_probs=71.5
Q ss_pred CCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEE
Q 041155 187 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYL 266 (471)
Q Consensus 187 ~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 266 (471)
.+...+||++|.+.. + ..|..++.|..|.|.+|.++..-|.--.-+++|..|.+.+|.+...+...-+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 456778888887763 2 3456778888888888888843333333456788888888887666655567777888888
Q ss_pred EcCCccCCCCCch-hhhhCCCCCCCEEEecCC
Q 041155 267 DLGSNNLSRSTDW-LQVVGNLPLLTTLYLYRC 297 (471)
Q Consensus 267 ~Ls~n~l~~~~~~-~~~l~~l~~L~~L~l~~n 297 (471)
.+-+|..+..... .-.+..+|+|+.||+.+-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8777776654211 124556667777766554
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0013 Score=58.23 Aligned_cols=86 Identities=23% Similarity=0.262 Sum_probs=45.9
Q ss_pred ccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC---
Q 041155 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD--- 429 (471)
Q Consensus 353 l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~--- 429 (471)
|..++.|..|.|++|+++..-|.--.-+++|..|.|.+|++.. ++.+.....+++|++|.+-+|..+..---
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-----l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-----LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-----hhhcchhccCCccceeeecCCchhcccCceeE
Confidence 4456666777777777764334333334566777777766651 22222112223666666666665532211
Q ss_pred -CCCCCCCCEEECcC
Q 041155 430 -LGGFSSLKELYLEN 443 (471)
Q Consensus 430 -~~~l~~L~~L~Ls~ 443 (471)
+..+++|++||+++
T Consensus 135 vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQK 149 (233)
T ss_pred EEEecCcceEeehhh
Confidence 44566666666654
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.0011 Score=61.16 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=7.8
Q ss_pred CCCCCCEEEecCCCCC
Q 041155 285 NLPLLTTLYLYRCHLP 300 (471)
Q Consensus 285 ~l~~L~~L~l~~n~l~ 300 (471)
++|+|+++.+++|++.
T Consensus 89 ~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIK 104 (260)
T ss_pred hCCceeEEeecCCccc
Confidence 3355555555555443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00013 Score=67.58 Aligned_cols=101 Identities=24% Similarity=0.245 Sum_probs=49.0
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEE
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLD 267 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~ 267 (471)
+.+.|++-++.++.. ....+|+.|++|.|+-|+++.- ..+..|++|++|.|..|.+.....+..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 334444444444432 2233455555555555555421 22444555555555555544444444555666666666
Q ss_pred cCCccCCCCC--c-hhhhhCCCCCCCEEE
Q 041155 268 LGSNNLSRST--D-WLQVVGNLPLLTTLY 293 (471)
Q Consensus 268 Ls~n~l~~~~--~-~~~~l~~l~~L~~L~ 293 (471)
|..|.-.|.. . -...+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 6665544431 0 122444556666554
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.29 E-value=0.00016 Score=70.56 Aligned_cols=281 Identities=19% Similarity=0.137 Sum_probs=118.5
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCC-CCCCcCccCCCCCCCCeEeCCCC-cccCCCCccc-cC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNF-SGSPIPEFIGSLTKLSYLDLSFA-EFEGPIPSHL-GN 234 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l-~g~~ip~~l~~l~~L~~L~Ls~n-~l~g~ip~~l-~~ 234 (471)
+.++.|.+.++.- +.. ..+-....+++++++|++.++.. +....-+.-..+++|++|++..+ .++...-..+ ..
T Consensus 138 g~lk~LSlrG~r~--v~~-sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRA--VGD-SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccc--CCc-chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 4566666666310 000 01122334566777776666542 22111112235666777777663 2332222211 24
Q ss_pred CCCCCEEEccCCCCCCCCCh-hhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCC-CCCCCCcccccCCCC
Q 041155 235 LSALQHLDLSLNHLFSVGNL-DWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRC-HLPPIVPLSLSNLNY 312 (471)
Q Consensus 235 l~~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n-~l~g~~p~~l~~l~~ 312 (471)
+++|++|+++.+..+..... .....+..++.+.+.++.=.+...+...-+.+..+..+++..+ .++..--..+.. .
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~--~ 292 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC--G 292 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh--h
Confidence 66677777776653222111 1123333344443333221111101111112222333333222 112111011111 1
Q ss_pred CCcccEEECCCCcCCCccccc-------cccEEEcccccC-ccCcCccc-cCCCCCCEEeCcCCcCc--ccCChhccCCC
Q 041155 313 STSLQFLELSENNLTNSIYPY-------NLVLLGLDSNLL-RGSIPVAF-KHMVSLSFLGLASNEFE--GGVPDFFANMC 381 (471)
Q Consensus 313 ~~~L~~L~Ls~N~l~g~ip~~-------~L~~L~Ls~n~l-~g~ip~~l-~~l~~L~~L~Ls~N~l~--g~ip~~l~~l~ 381 (471)
+..|++++.+++..-+..+-+ +|+.+.++.++. +..--..+ .+++.|+.+++...... +.+-..-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 144555555544332221111 455555554432 11111111 34566777777665443 12222224567
Q ss_pred CCCEEeCcCCcCcccCcHHhhhccC-CCCcCCccEEEcccCcCcccCC-C-CCCCCCCCEEECcCCc
Q 041155 382 SLTMLNISDNKLRGHFPELIQNLSS-GCTKNSLEMLYLSSNEITGSVP-D-LGGFSSLKELYLENNR 445 (471)
Q Consensus 382 ~L~~L~Ls~N~l~g~ip~~l~~l~~-~~~~~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~Ls~N~ 445 (471)
.|+++.++++.+... +.+..+.. .|....|..+.|+++...-.-- . +..+++|+.+++-..+
T Consensus 373 ~lr~lslshce~itD--~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITD--EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhh--hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 777777776654311 12222221 1234467777777776432211 1 5667777777776654
No 66
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.90 E-value=0.016 Score=38.28 Aligned_cols=41 Identities=56% Similarity=1.129 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCc-CCCCCCCCCCCCCCCCCCCCcceeeeC
Q 041155 113 DEEREALLTFKESLV-DESGVLSSWGPEDEKRDRCKWAGVGCS 154 (471)
Q Consensus 113 p~~~~~l~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~ 154 (471)
+.+..+|++||..+. ++.+.+.+|.... ..++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 467889999999887 4668889997421 2689999999994
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.81 E-value=0.0035 Score=34.83 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=13.4
Q ss_pred CCCEEECcCCcccccCchhhhc
Q 041155 435 SLKELYLENNRLNGFTNNSIGQ 456 (471)
Q Consensus 435 ~L~~L~Ls~N~l~g~ip~~l~~ 456 (471)
+|++||+++|+++ .+|+++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777776 56665544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.00046 Score=63.97 Aligned_cols=101 Identities=27% Similarity=0.278 Sum_probs=77.2
Q ss_pred CCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCC
Q 041155 211 LTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLT 290 (471)
Q Consensus 211 l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 290 (471)
+.+.+.|+.-++.++. | .-..+++.|++|.|+-|++..... +..|++|++|.|..|.+....+ ..-+.++|+|+
T Consensus 18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhh
Confidence 4567788888888773 2 224578999999999999766653 8889999999999999988754 45788999999
Q ss_pred EEEecCCCCCCCCcc-----cccCCCCCCcccEEE
Q 041155 291 TLYLYRCHLPPIVPL-----SLSNLNYSTSLQFLE 320 (471)
Q Consensus 291 ~L~l~~n~l~g~~p~-----~l~~l~~~~~L~~L~ 320 (471)
.|.|..|.-.|.-+. .+..+ ++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~L---PnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVL---PNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHc---ccchhcc
Confidence 999999987765543 23445 7777776
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.0037 Score=34.70 Aligned_cols=21 Identities=48% Similarity=0.717 Sum_probs=12.0
Q ss_pred CCCeEeCCCCcccCCCCccccC
Q 041155 213 KLSYLDLSFAEFEGPIPSHLGN 234 (471)
Q Consensus 213 ~L~~L~Ls~n~l~g~ip~~l~~ 234 (471)
+|++|||++|+++ .||+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 56655443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.49 E-value=0.0001 Score=75.67 Aligned_cols=182 Identities=27% Similarity=0.225 Sum_probs=105.2
Q ss_pred CCCCEEeCCCCCCCCCC---cCccCCCCCCCCeEeCCCCcccCCCCc----cccCC-CCCCEEEccCCCCCCCCCh---h
Q 041155 187 HRLTYLDLSLNNFSGSP---IPEFIGSLTKLSYLDLSFAEFEGPIPS----HLGNL-SALQHLDLSLNHLFSVGNL---D 255 (471)
Q Consensus 187 ~~L~~L~Ls~n~l~g~~---ip~~l~~l~~L~~L~Ls~n~l~g~ip~----~l~~l-~~L~~L~L~~n~~~~~~~~---~ 255 (471)
..+..|.|.+|.+.... +-..+.....|+.|++++|.+.+.--. .+... ..+++|++..|.+...+.. .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34778888888887541 123455678899999999988733211 12222 4567777777775443321 3
Q ss_pred hhcCCCCCcEEEcCCccCCCC--CchhhhhC----CCCCCCEEEecCCCCCCCCc----ccccCCCCCCc-ccEEECCCC
Q 041155 256 WLSHLSSLTYLDLGSNNLSRS--TDWLQVVG----NLPLLTTLYLYRCHLPPIVP----LSLSNLNYSTS-LQFLELSEN 324 (471)
Q Consensus 256 ~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~----~l~~L~~L~l~~n~l~g~~p----~~l~~l~~~~~-L~~L~Ls~N 324 (471)
.+.....++.+|++.|.+... ...+..+. ...++++|.+.+|.++.... ..+... +. +..+++..|
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~---~~~~~el~l~~n 243 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG---ESLLRELDLASN 243 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc---chhhHHHHHHhc
Confidence 355567788888888877422 11223333 35677778887777663221 122222 33 556777777
Q ss_pred cCCCcc----------ccccccEEEcccccCccCc----CccccCCCCCCEEeCcCCcCcc
Q 041155 325 NLTNSI----------YPYNLVLLGLDSNLLRGSI----PVAFKHMVSLSFLGLASNEFEG 371 (471)
Q Consensus 325 ~l~g~i----------p~~~L~~L~Ls~n~l~g~i----p~~l~~l~~L~~L~Ls~N~l~g 371 (471)
.+.... +...++.++++.|.++..- ...+..+..++.+.+++|.+..
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 765431 1114566777777666432 3344455666677777766653
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.87 E-value=0.00059 Score=70.10 Aligned_cols=199 Identities=30% Similarity=0.269 Sum_probs=102.5
Q ss_pred CCCCEEEccCCCCCCCCCh---hhhcCCCCCcEEEcCCccCCCCC--chhhhhCCC-CCCCEEEecCCCCCCCC----cc
Q 041155 236 SALQHLDLSLNHLFSVGNL---DWLSHLSSLTYLDLGSNNLSRST--DWLQVVGNL-PLLTTLYLYRCHLPPIV----PL 305 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~---~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~l~~l-~~L~~L~l~~n~l~g~~----p~ 305 (471)
..+..+.|.+|.+...... ..+.....|+.|+++.|.+.+.. .+...+... ..+++|++..|.+++.- ..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3477778888876544321 23556677777888887777431 111222222 34556666666665432 22
Q ss_pred cccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccC----ChhccCCC
Q 041155 306 SLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGV----PDFFANMC 381 (471)
Q Consensus 306 ~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i----p~~l~~l~ 381 (471)
.+... ..++.+|++.|.+... ....+.-.++..+....++++|.+++|.++... -..+...+
T Consensus 167 ~L~~~---~~l~~l~l~~n~l~~~-----------g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 167 VLEKN---EHLTELDLSLNGLIEL-----------GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE 232 (478)
T ss_pred HHhcc---cchhHHHHHhcccchh-----------hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence 23332 5566666666654310 000000011112334667788888887776311 11233334
Q ss_pred C-CCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCC----C-CCCCCCCCEEECcCCccccc
Q 041155 382 S-LTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP----D-LGGFSSLKELYLENNRLNGF 449 (471)
Q Consensus 382 ~-L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip----~-~~~l~~L~~L~Ls~N~l~g~ 449 (471)
. +..|++..|++.+..-..+...-.. ....+++++++.|.++..-. . +..++.++++.+++|.+...
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~-~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSV-LSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcc-cchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 4 5667888887775422222111100 00256777888887765433 2 44566777777777777643
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.52 E-value=0.24 Score=41.01 Aligned_cols=99 Identities=22% Similarity=0.304 Sum_probs=41.5
Q ss_pred ccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-
Q 041155 351 VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD- 429 (471)
Q Consensus 351 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~- 429 (471)
..|.++++|+.+.+..+ +...-...+..+++++.+.+.+ .+...-...+..+. +|+.+++..+ +...-..
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~------~l~~i~~~~~-~~~i~~~~ 99 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT------NLKNIDIPSN-ITEIGSSS 99 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T------TECEEEETTT--BEEHTTT
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc------cccccccCcc-ccEEchhh
Confidence 34666667777777664 4422233456666777777754 33311122333344 6777777654 4322222
Q ss_pred CCCCCCCCEEECcCCcccccCchhhhcCCCC
Q 041155 430 LGGFSSLKELYLENNRLNGFTNNSIGQMSKL 460 (471)
Q Consensus 430 ~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 460 (471)
+.++ .|+.+.+.. .++..-...+.++++|
T Consensus 100 f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 100 FSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--T--EEE-TT-B-SS----GGG-----
T ss_pred hcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666 777777765 3333333455555555
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.14 E-value=0.27 Score=40.71 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=59.1
Q ss_pred cccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-C
Q 041155 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-L 430 (471)
Q Consensus 352 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~ 430 (471)
.|..+++|+.+.+.. .+...-...+..+++|+.+.+..+ +...-...+..+. +++.+.+.+ .+...-.. +
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-cccccccccc
Confidence 567788999999985 565333455778889999999875 5522223344444 799999975 44322233 8
Q ss_pred CCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcC
Q 041155 431 GGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNG 467 (471)
Q Consensus 431 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 467 (471)
..+++|+.+++..+ ++..-...+.++ .|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 88999999999876 553334456776 888888765
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.52 E-value=0.13 Score=26.39 Aligned_cols=11 Identities=45% Similarity=0.480 Sum_probs=3.5
Q ss_pred CCeEeCCCCcc
Q 041155 214 LSYLDLSFAEF 224 (471)
Q Consensus 214 L~~L~Ls~n~l 224 (471)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.36 E-value=0.16 Score=28.58 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=9.2
Q ss_pred CCCCEEeCcCCcCcccCcHH
Q 041155 381 CSLTMLNISDNKLRGHFPEL 400 (471)
Q Consensus 381 ~~L~~L~Ls~N~l~g~ip~~ 400 (471)
++|+.|+|++|++++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34555555555555444433
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.24 E-value=0.13 Score=28.92 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=11.1
Q ss_pred CCCCEEECcCCcccccCchhh
Q 041155 434 SSLKELYLENNRLNGFTNNSI 454 (471)
Q Consensus 434 ~~L~~L~Ls~N~l~g~ip~~l 454 (471)
++|++|+|++|++++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 556666777666665544433
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.22 E-value=0.19 Score=51.93 Aligned_cols=115 Identities=25% Similarity=0.179 Sum_probs=64.6
Q ss_pred CCCCCCEEeCCCCCCCC-CCcCccCCCCCCCCeEeCCCC-cccCCCC----ccccCCCCCCEEEccCCCCCCCCChhhhc
Q 041155 185 QLHRLTYLDLSLNNFSG-SPIPEFIGSLTKLSYLDLSFA-EFEGPIP----SHLGNLSALQHLDLSLNHLFSVGNLDWLS 258 (471)
Q Consensus 185 ~l~~L~~L~Ls~n~l~g-~~ip~~l~~l~~L~~L~Ls~n-~l~g~ip----~~l~~l~~L~~L~L~~n~~~~~~~~~~l~ 258 (471)
.++.|+.|.+..+.-.. ..+-.....+++|+.|+++.+ ......+ .....+++|+.|+++.+..........++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777653321 112234456778888888762 2211111 22334577788888877732222223333
Q ss_pred -CCCCCcEEEcCCcc-CCCCCchhhhhCCCCCCCEEEecCCCCC
Q 041155 259 -HLSSLTYLDLGSNN-LSRSTDWLQVVGNLPLLTTLYLYRCHLP 300 (471)
Q Consensus 259 -~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~l~~n~l~ 300 (471)
.+++|++|.+..+. ++.. .+......++.|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccc
Confidence 36788888866665 3433 13345556777888888877653
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.36 E-value=0.51 Score=27.03 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=8.9
Q ss_pred CCCCeEeCCCCcccCCCCc
Q 041155 212 TKLSYLDLSFAEFEGPIPS 230 (471)
Q Consensus 212 ~~L~~L~Ls~n~l~g~ip~ 230 (471)
++|++|+|++|+++ .+|+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555554 3443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.36 E-value=0.51 Score=27.03 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=8.9
Q ss_pred CCCCeEeCCCCcccCCCCc
Q 041155 212 TKLSYLDLSFAEFEGPIPS 230 (471)
Q Consensus 212 ~~L~~L~Ls~n~l~g~ip~ 230 (471)
++|++|+|++|+++ .+|+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555554 3443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.72 E-value=0.99 Score=25.79 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=6.0
Q ss_pred CCCEEeCcCCcCc
Q 041155 382 SLTMLNISDNKLR 394 (471)
Q Consensus 382 ~L~~L~Ls~N~l~ 394 (471)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.72 E-value=0.99 Score=25.79 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=6.0
Q ss_pred CCCEEeCcCCcCc
Q 041155 382 SLTMLNISDNKLR 394 (471)
Q Consensus 382 ~L~~L~Ls~N~l~ 394 (471)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.35 E-value=0.74 Score=45.66 Aligned_cols=137 Identities=23% Similarity=0.185 Sum_probs=83.2
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhh-CCCCCCEEeCCCCC-CCCCCcCccCCCCCCCCeEeCCCCccc--CCCCcccc
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALL-QLHRLTYLDLSLNN-FSGSPIPEFIGSLTKLSYLDLSFAEFE--GPIPSHLG 233 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~-~l~~L~~L~Ls~n~-l~g~~ip~~l~~l~~L~~L~Ls~n~l~--g~ip~~l~ 233 (471)
..+++|+.++. ..++..+-.+++ +..+|+.|-++.++ |+...+-..=.+.+.|+.+++..+... +++-..-.
T Consensus 294 ~~lq~l~~s~~----t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 294 HALQVLCYSSC----TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hHhhhhcccCC----CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 35677777764 334433334444 67888888888876 332211112236778888888877543 22222234
Q ss_pred CCCCCCEEEccCCCCCCCCChhh----hcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCC
Q 041155 234 NLSALQHLDLSLNHLFSVGNLDW----LSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHL 299 (471)
Q Consensus 234 ~l~~L~~L~L~~n~~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l 299 (471)
+++.|+.+.++.+..+....+.. -..+..|+.+.++++...... ....+..+++|+.+++..++-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhh
Confidence 67888888888777433321111 233557888888887665442 245677888888888887754
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.51 E-value=0.65 Score=47.88 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=6.3
Q ss_pred CCCCCcEEEcCCcc
Q 041155 259 HLSSLTYLDLGSNN 272 (471)
Q Consensus 259 ~l~~L~~L~Ls~n~ 272 (471)
.++.|++|+++.+.
T Consensus 293 ~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 293 RCPSLRELDLSGCH 306 (482)
T ss_pred hcCcccEEeeecCc
Confidence 34444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.94 E-value=0.04 Score=50.13 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=65.0
Q ss_pred cccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCC
Q 041155 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLG 431 (471)
Q Consensus 352 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~ 431 (471)
.+......+.||++.|++. .+-..+..++.|..||++.|++. ..|...++.. .+..+++..|..+...-.++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~------e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQR------ETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHH------HHHHHHhhccchhhCCcccc
Confidence 4566677888888888876 34445566677888888888887 6777777776 67778888888774333388
Q ss_pred CCCCCCEEECcCCccc
Q 041155 432 GFSSLKELYLENNRLN 447 (471)
Q Consensus 432 ~l~~L~~L~Ls~N~l~ 447 (471)
..+.++++++..|.|+
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8888888888888765
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.32 E-value=0.1 Score=47.54 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=68.9
Q ss_pred hccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhh
Q 041155 376 FFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSI 454 (471)
Q Consensus 376 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l 454 (471)
.+......+.||++.|++.. .-..+..+. .+..|+++.|.+. ..|. +++...+..+++.+|..+ ..|.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t------~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILT------RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHH------HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence 35566788999999998872 333455555 7889999999887 4555 888888999999988886 568899
Q ss_pred hcCCCCCEEECcCCCC
Q 041155 455 GQMSKLRTLSLNGNSL 470 (471)
Q Consensus 455 ~~l~~L~~L~Ls~N~l 470 (471)
+..+.++++++..|.|
T Consensus 108 ~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccCCcchhhhccCcc
Confidence 9999999999998876
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.08 E-value=0.57 Score=41.94 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=45.2
Q ss_pred CCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcc-cCcHHhhhccCCCCcCCccEEEcccCc-CcccCCC-CCCC
Q 041155 357 VSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG-HFPELIQNLSSGCTKNSLEMLYLSSNE-ITGSVPD-LGGF 433 (471)
Q Consensus 357 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~l~~~~~~~~L~~L~L~~N~-l~g~ip~-~~~l 433 (471)
..++.+|-++..+..+--+.+.+++.++.|.+.++.=-+ .--+.+++. .++|+.|++++|. ||..--. +..+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~-----~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL-----APSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhccc-----ccchheeeccCCCeechhHHHHHHHh
Confidence 356777777777776555666677777777776654221 111122221 2367777777663 3322222 5556
Q ss_pred CCCCEEECcC
Q 041155 434 SSLKELYLEN 443 (471)
Q Consensus 434 ~~L~~L~Ls~ 443 (471)
++|+.|.+.+
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 6666666543
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.13 E-value=0.7 Score=41.38 Aligned_cols=82 Identities=26% Similarity=0.239 Sum_probs=45.2
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCC-CCcccc-CCCCCCEEEccCCCCCCCCChhhhcCCCCCcE
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGP-IPSHLG-NLSALQHLDLSLNHLFSVGNLDWLSHLSSLTY 265 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~-ip~~l~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 265 (471)
.++.+|-++..+..+ =-+.+.+++.++.|.+.++.--+. --+.++ -.++|+.|++++|.-++.....++.++++|+.
T Consensus 102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 456677776666543 224455666677777766642211 001111 23567777777776444444556666666666
Q ss_pred EEcCC
Q 041155 266 LDLGS 270 (471)
Q Consensus 266 L~Ls~ 270 (471)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66554
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.56 E-value=5.4 Score=23.02 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=7.0
Q ss_pred CCCCEEECcCCcc
Q 041155 434 SSLKELYLENNRL 446 (471)
Q Consensus 434 ~~L~~L~Ls~N~l 446 (471)
++|+.|+++.|++
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555544
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.65 E-value=4.8 Score=23.25 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=10.4
Q ss_pred CCCeEeCCCCcccCCCCc
Q 041155 213 KLSYLDLSFAEFEGPIPS 230 (471)
Q Consensus 213 ~L~~L~Ls~n~l~g~ip~ 230 (471)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666666 4554
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.70 E-value=5.2 Score=23.39 Aligned_cols=14 Identities=50% Similarity=0.655 Sum_probs=8.1
Q ss_pred CCCEEeCcCCcCcc
Q 041155 382 SLTMLNISDNKLRG 395 (471)
Q Consensus 382 ~L~~L~Ls~N~l~g 395 (471)
+|++|||++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45666666666553
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=46.04 E-value=1e+02 Score=31.61 Aligned_cols=35 Identities=14% Similarity=-0.074 Sum_probs=17.4
Q ss_pred CCCEEEecCCCCCCCCcccccCCCCCCcccEEECCC
Q 041155 288 LLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSE 323 (471)
Q Consensus 288 ~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~ 323 (471)
.+++|....|.+.|..-... .....++.+.+++..
T Consensus 355 R~q~l~~rdnnldgeg~~vg-k~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVG-KRKQSKSGRILKAGR 389 (553)
T ss_pred eeeEeecccccccccccccc-ceeeccccccccccc
Confidence 36666666666655443322 222224555555543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.69 E-value=11 Score=39.04 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=7.2
Q ss_pred ccEEEcccCcCcc
Q 041155 413 LEMLYLSSNEITG 425 (471)
Q Consensus 413 L~~L~L~~N~l~g 425 (471)
|++|-+.+|.+..
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 5555555555543
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=44.24 E-value=35 Score=34.83 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=22.0
Q ss_pred CCccEEEcccCcCcccCCC---CCCCCCCCEEECcC
Q 041155 411 NSLEMLYLSSNEITGSVPD---LGGFSSLKELYLEN 443 (471)
Q Consensus 411 ~~L~~L~L~~N~l~g~ip~---~~~l~~L~~L~Ls~ 443 (471)
..+++|....|++.|+.-. +..-+..+.+++..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccc
Confidence 4678888888888776655 33445666666654
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.76 E-value=24 Score=36.73 Aligned_cols=67 Identities=28% Similarity=0.303 Sum_probs=43.4
Q ss_pred CCCCCCEEEccCCCCCCCCChhhh-cCCCCCcEEEcCCc--cCCCCCchhhhhCCCCCCCEEEecCCCCCCC
Q 041155 234 NLSALQHLDLSLNHLFSVGNLDWL-SHLSSLTYLDLGSN--NLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI 302 (471)
Q Consensus 234 ~l~~L~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~Ls~n--~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~ 302 (471)
+.+.+..+.|++|++........+ ...++|+.|+|++| .+....+ ...++ ...|++|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k-~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLK-GLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhc-CCCHHHeeecCCccccc
Confidence 456677888999986655544333 34578999999998 4433321 12222 23588899999987654
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.36 E-value=41 Score=18.95 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=7.8
Q ss_pred CCCCCEEECcCCC
Q 041155 457 MSKLRTLSLNGNS 469 (471)
Q Consensus 457 l~~L~~L~Ls~N~ 469 (471)
+++|+.|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3566666666653
Done!