Query 041155
Match_columns 471
No_of_seqs 688 out of 4808
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.9E-55 3.4E-59 474.4 16.6 432 4-470 9-550 (768)
2 4eco_A Uncharacterized protein 100.0 1.7E-48 5.8E-53 416.3 16.1 433 6-470 29-578 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 6.5E-48 2.2E-52 420.3 17.7 277 174-470 502-818 (876)
4 1ogq_A PGIP-2, polygalacturona 100.0 5E-45 1.7E-49 356.2 18.7 298 2-449 1-307 (313)
5 3rgz_A Protein brassinosteroid 100.0 8.9E-42 3.1E-46 372.2 23.4 331 111-470 9-380 (768)
6 4eco_A Uncharacterized protein 100.0 9.8E-40 3.4E-44 348.6 21.4 338 114-471 30-526 (636)
7 3v47_A TOLL-like receptor 5B a 100.0 5.9E-38 2E-42 321.6 26.5 301 158-471 30-408 (455)
8 4ecn_A Leucine-rich repeat pro 100.0 2E-37 6.8E-42 337.8 26.6 331 113-467 268-785 (876)
9 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-38 1.5E-42 307.0 15.0 294 110-469 2-302 (313)
10 3t6q_A CD180 antigen; protein- 100.0 2.7E-35 9.2E-40 312.8 25.5 296 159-471 255-560 (606)
11 2id5_A Lingo-1, leucine rich r 100.0 6.7E-35 2.3E-39 300.9 24.0 295 158-470 32-332 (477)
12 2z7x_B TOLL-like receptor 1, v 100.0 7.4E-35 2.5E-39 303.8 22.6 295 157-471 44-481 (520)
13 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-34 9.4E-39 305.0 26.4 87 157-249 79-166 (606)
14 3t6q_A CD180 antigen; protein- 100.0 3.6E-34 1.2E-38 304.1 26.8 296 159-470 58-412 (606)
15 3v47_A TOLL-like receptor 5B a 100.0 1.8E-34 6.2E-39 295.6 23.4 280 178-471 24-384 (455)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-34 3.7E-39 304.4 22.1 155 314-471 334-510 (549)
17 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-34 1.2E-38 304.3 25.0 300 157-471 55-534 (606)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-34 1.1E-38 301.9 24.0 289 158-471 76-510 (562)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-34 1.3E-38 298.4 23.8 272 156-451 67-485 (520)
20 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-34 1.8E-38 314.0 24.0 301 157-471 23-375 (844)
21 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-34 2.5E-38 312.8 22.5 104 315-424 267-375 (844)
22 1ziw_A TOLL-like receptor 3; i 100.0 2E-33 6.9E-38 302.4 25.3 296 158-469 97-441 (680)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-33 7.9E-38 295.4 23.4 291 158-471 52-486 (562)
24 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-32 3.6E-37 296.8 28.6 294 158-469 25-364 (680)
25 2id5_A Lingo-1, leucine rich r 100.0 9.6E-33 3.3E-37 284.8 25.9 282 174-471 22-309 (477)
26 4fcg_A Uncharacterized protein 100.0 2.1E-34 7.3E-39 282.7 12.7 225 159-424 82-314 (328)
27 2z63_A TOLL-like receptor 4, v 100.0 6.8E-33 2.3E-37 291.9 24.5 294 157-471 75-531 (570)
28 2z63_A TOLL-like receptor 4, v 100.0 5.5E-33 1.9E-37 292.6 23.5 298 157-471 51-507 (570)
29 3o6n_A APL1; leucine-rich repe 100.0 4.7E-32 1.6E-36 272.4 27.0 268 183-470 65-351 (390)
30 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.9E-36 263.4 28.5 285 159-469 32-330 (330)
31 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-32 1.6E-36 288.5 27.3 132 334-471 446-580 (635)
32 3oja_B Anopheles plasmodium-re 100.0 5.4E-32 1.9E-36 286.9 27.4 279 159-470 76-357 (597)
33 2ft3_A Biglycan; proteoglycan, 100.0 6.1E-32 2.1E-36 265.6 25.3 284 159-469 34-331 (332)
34 3o6n_A APL1; leucine-rich repe 100.0 6.1E-32 2.1E-36 271.6 23.5 258 158-450 93-355 (390)
35 3oja_B Anopheles plasmodium-re 100.0 6.5E-32 2.2E-36 286.3 24.5 266 183-470 71-336 (597)
36 4fmz_A Internalin; leucine ric 100.0 8.1E-31 2.8E-35 259.0 28.7 278 157-471 65-346 (347)
37 3bz5_A Internalin-J, INLJ; leu 100.0 6.9E-31 2.3E-35 269.1 27.7 271 158-471 64-352 (457)
38 1jl5_A Outer protein YOPM; leu 100.0 2E-31 6.8E-36 272.8 23.2 246 187-471 131-409 (454)
39 4fmz_A Internalin; leucine ric 100.0 2.5E-30 8.6E-35 255.4 29.7 278 158-471 44-324 (347)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-30 4.8E-35 266.8 26.5 278 158-471 42-331 (457)
41 1o6v_A Internalin A; bacterial 100.0 2.7E-30 9.1E-35 265.8 28.0 279 158-470 68-387 (466)
42 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-31 5.5E-36 280.3 17.7 179 158-347 26-210 (549)
43 4fcg_A Uncharacterized protein 100.0 7.1E-32 2.4E-36 264.7 13.8 278 109-446 22-313 (328)
44 1o6v_A Internalin A; bacterial 100.0 3.7E-30 1.3E-34 264.8 26.2 257 157-449 111-390 (466)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-30 2E-34 251.5 23.1 282 146-445 33-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1E-28 3.5E-33 242.3 28.2 261 188-471 32-306 (330)
47 1jl5_A Outer protein YOPM; leu 100.0 5.1E-30 1.8E-34 262.4 16.5 247 158-448 11-291 (454)
48 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-28 5.7E-33 261.1 26.5 302 156-471 50-555 (635)
49 2z66_A Variable lymphocyte rec 100.0 8.8E-30 3E-34 247.2 12.9 238 178-449 21-263 (306)
50 2z80_A TOLL-like receptor 2, v 100.0 6.3E-29 2.2E-33 246.2 18.3 262 173-451 41-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 1.5E-28 5.2E-33 238.5 18.4 246 190-471 10-261 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 5E-33 243.6 17.2 272 185-471 29-314 (353)
53 3zyi_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 241.1 24.7 245 161-447 57-303 (452)
54 3zyj_A Leucine-rich repeat-con 100.0 4.3E-27 1.5E-31 240.1 24.7 245 161-447 46-292 (440)
55 1ozn_A Reticulon 4 receptor; N 100.0 5.4E-28 1.9E-32 232.2 16.9 268 161-468 14-284 (285)
56 3g06_A SSPH2 (leucine-rich rep 100.0 3.5E-26 1.2E-30 241.5 29.5 254 160-471 42-297 (622)
57 3o53_A Protein LRIM1, AGAP0063 100.0 8.7E-29 3E-33 241.6 8.8 257 159-466 11-270 (317)
58 1wwl_A Monocyte differentiatio 100.0 7.5E-30 2.6E-34 248.6 1.2 246 159-447 44-309 (312)
59 1wwl_A Monocyte differentiatio 100.0 1.8E-29 6.2E-34 245.9 3.8 250 183-471 39-309 (312)
60 1z7x_W Ribonuclease inhibitor; 100.0 9.4E-30 3.2E-34 260.9 1.5 300 158-471 56-411 (461)
61 3zyi_A Leucine-rich repeat-con 99.9 1.2E-26 4.2E-31 237.5 23.3 229 158-424 75-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 1.7E-26 5.8E-31 235.7 23.0 243 191-469 47-290 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-27 1.9E-31 247.7 19.9 243 159-457 62-307 (622)
64 1z7x_W Ribonuclease inhibitor; 99.9 2.1E-29 7.2E-34 258.3 1.4 303 159-471 29-383 (461)
65 3oja_A Leucine-rich immune mol 99.9 1.7E-27 5.9E-32 245.9 13.5 242 179-466 22-270 (487)
66 1ozn_A Reticulon 4 receptor; N 99.9 6.8E-26 2.3E-30 217.5 21.8 222 215-470 14-237 (285)
67 3o53_A Protein LRIM1, AGAP0063 99.9 6.1E-27 2.1E-31 228.5 9.6 242 158-429 34-281 (317)
68 3oja_A Leucine-rich immune mol 99.9 2.5E-26 8.6E-31 237.2 11.6 232 158-419 34-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 3.8E-24 1.3E-28 204.3 22.6 208 213-451 29-241 (276)
70 2o6q_A Variable lymphocyte rec 99.9 2.3E-23 8E-28 198.3 22.7 219 144-397 3-221 (270)
71 2z62_A TOLL-like receptor 4, v 99.9 7.4E-24 2.5E-28 202.3 18.2 217 178-429 21-242 (276)
72 3rfs_A Internalin B, repeat mo 99.9 5.2E-24 1.8E-28 203.0 16.6 227 188-458 20-246 (272)
73 3rfs_A Internalin B, repeat mo 99.9 1.1E-23 3.7E-28 200.8 18.5 209 184-435 38-247 (272)
74 2ca6_A RAN GTPase-activating p 99.9 1.5E-25 5E-30 224.7 4.0 251 178-451 23-320 (386)
75 1p9a_G Platelet glycoprotein I 99.9 4.7E-23 1.6E-27 198.3 20.0 201 232-470 6-207 (290)
76 3goz_A Leucine-rich repeat-con 99.9 4.4E-25 1.5E-29 219.3 5.9 258 173-454 8-304 (362)
77 3ogk_B Coronatine-insensitive 99.9 8.9E-26 3E-30 238.7 0.6 298 158-471 164-526 (592)
78 2o6q_A Variable lymphocyte rec 99.9 1.8E-22 6.1E-27 192.1 21.9 200 237-470 17-217 (270)
79 1p9a_G Platelet glycoprotein I 99.9 1.5E-22 5.2E-27 194.7 20.5 198 184-395 7-209 (290)
80 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.8E-29 218.3 5.1 252 204-471 24-316 (386)
81 3goz_A Leucine-rich repeat-con 99.9 2.6E-24 8.9E-29 213.8 7.3 248 158-426 22-299 (362)
82 4glp_A Monocyte differentiatio 99.9 9.6E-24 3.3E-28 205.1 11.1 230 159-425 65-308 (310)
83 2ast_B S-phase kinase-associat 99.9 8.9E-25 3.1E-29 214.5 3.5 265 145-455 36-314 (336)
84 4glp_A Monocyte differentiatio 99.9 6E-24 2.1E-28 206.5 9.0 234 187-471 64-307 (310)
85 1h6u_A Internalin H; cell adhe 99.9 1E-21 3.5E-26 190.6 18.9 189 186-395 40-231 (308)
86 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.5E-28 204.6 5.7 248 187-471 47-306 (336)
87 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6.3E-26 188.8 18.5 205 192-425 24-231 (308)
88 3m19_A Variable lymphocyte rec 99.9 4.2E-21 1.4E-25 180.6 19.3 179 237-449 15-194 (251)
89 3m19_A Variable lymphocyte rec 99.9 7.3E-21 2.5E-25 179.0 20.4 191 145-396 4-194 (251)
90 3ogk_B Coronatine-insensitive 99.9 1.7E-24 5.9E-29 228.8 -5.4 296 160-471 140-501 (592)
91 3cvr_A Invasion plasmid antige 99.9 5.6E-21 1.9E-25 199.4 19.1 200 147-405 49-254 (571)
92 2o6s_A Variable lymphocyte rec 99.9 6.1E-21 2.1E-25 174.1 17.1 185 144-357 5-189 (208)
93 2xwt_C Thyrotropin receptor; s 99.9 2.3E-21 8E-26 180.9 14.5 201 204-468 26-236 (239)
94 2xwt_C Thyrotropin receptor; s 99.9 3.6E-21 1.2E-25 179.7 13.7 203 178-421 25-236 (239)
95 2p1m_B Transport inhibitor res 99.8 6.5E-23 2.2E-27 216.7 -3.1 296 158-470 130-518 (594)
96 4ay9_X Follicle-stimulating ho 99.8 4.3E-20 1.5E-24 182.5 15.2 194 162-370 13-215 (350)
97 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.9E-24 189.6 19.2 187 187-433 59-253 (571)
98 2p1m_B Transport inhibitor res 99.8 1.8E-22 6E-27 213.4 -2.7 224 233-468 286-541 (594)
99 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 165.1 15.8 180 215-435 10-190 (208)
100 4ay9_X Follicle-stimulating ho 99.8 2.2E-19 7.6E-24 177.3 15.9 236 190-445 12-257 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 3.7E-19 1.2E-23 163.9 15.6 130 335-470 34-165 (220)
102 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.6E-23 184.1 17.3 173 183-395 39-211 (605)
103 4b8c_D Glucose-repressible alc 99.8 1.6E-20 5.6E-25 202.5 3.4 182 178-370 215-404 (727)
104 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.4E-23 167.3 15.9 126 185-327 44-169 (291)
105 1h6t_A Internalin B; cell adhe 99.8 8.3E-19 2.8E-23 168.7 14.3 192 213-450 25-216 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 7.8E-23 158.6 15.1 131 334-470 33-164 (220)
107 1m9s_A Internalin B; cell inva 99.8 1.6E-18 5.5E-23 182.7 14.4 225 187-459 21-259 (605)
108 4ezg_A Putative uncharacterize 99.8 1.9E-18 6.4E-23 156.3 12.8 111 352-470 83-193 (197)
109 3e6j_A Variable lymphocyte rec 99.8 8.2E-18 2.8E-22 155.8 16.0 149 289-450 21-175 (229)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 6.7E-18 2.3E-22 155.5 14.6 155 264-451 14-170 (220)
111 3e6j_A Variable lymphocyte rec 99.8 2E-17 6.7E-22 153.3 17.8 162 142-331 15-176 (229)
112 1dce_A Protein (RAB geranylger 99.8 8.8E-21 3E-25 198.7 -5.9 191 258-465 346-567 (567)
113 2xot_A Amphoterin-induced prot 99.8 4.5E-18 1.5E-22 168.6 13.5 112 353-470 84-201 (361)
114 1dce_A Protein (RAB geranylger 99.8 1.5E-21 5.2E-26 204.5 -12.5 199 209-441 346-567 (567)
115 4b8c_D Glucose-repressible alc 99.7 1E-18 3.5E-23 188.5 7.1 176 257-470 220-403 (727)
116 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.4E-22 150.7 11.9 93 348-448 103-195 (197)
117 2v9t_B SLIT homolog 2 protein 99.7 4.5E-17 1.5E-21 149.9 15.1 90 351-446 74-164 (220)
118 1xeu_A Internalin C; cellular 99.7 7E-18 2.4E-22 159.7 7.8 167 160-372 21-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 5.1E-17 1.8E-21 146.2 12.9 128 317-451 11-143 (192)
120 2xot_A Amphoterin-induced prot 99.7 1.9E-16 6.5E-21 156.9 15.8 147 318-471 22-176 (361)
121 1xeu_A Internalin C; cellular 99.7 3E-17 1E-21 155.3 9.4 171 210-426 17-187 (263)
122 2je0_A Acidic leucine-rich nuc 99.7 7E-17 2.4E-21 138.9 10.5 126 334-467 18-149 (149)
123 2ell_A Acidic leucine-rich nuc 99.7 9.4E-17 3.2E-21 141.1 10.5 129 334-470 25-159 (168)
124 1w8a_A SLIT protein; signaling 99.7 2.9E-16 1E-20 141.2 12.9 127 290-428 11-143 (192)
125 2wfh_A SLIT homolog 2 protein 99.6 9.8E-16 3.3E-20 137.9 13.0 123 317-447 13-139 (193)
126 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 132.4 13.9 131 315-451 8-141 (177)
127 2ell_A Acidic leucine-rich nuc 99.6 7.8E-16 2.7E-20 135.1 9.2 136 158-301 24-161 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 131.4 8.4 126 287-442 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 128.7 13.4 126 336-470 10-136 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 2.6E-14 8.8E-19 128.6 13.7 125 336-470 13-138 (193)
131 3sb4_A Hypothetical leucine ri 99.5 2E-15 6.8E-20 147.6 5.1 216 235-465 100-328 (329)
132 1ds9_A Outer arm dynein; leuci 99.5 4.5E-17 1.5E-21 147.3 -6.5 146 286-464 17-180 (198)
133 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 124.5 10.3 127 314-469 19-151 (176)
134 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 121.3 11.1 109 334-451 10-119 (170)
135 2r9u_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 120.4 11.2 107 335-450 14-121 (174)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.9E-18 122.3 8.7 42 352-394 108-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4.2E-20 137.8 -5.2 134 314-470 18-152 (198)
138 3g39_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 117.9 11.3 107 315-428 10-119 (170)
139 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 3.9E-17 115.6 11.4 106 316-428 14-122 (174)
140 3sb4_A Hypothetical leucine ri 99.4 2.4E-13 8.3E-18 132.7 7.7 216 211-441 100-328 (329)
141 3un9_A NLR family member X1; l 99.3 3.8E-14 1.3E-18 140.6 -3.8 53 351-403 205-261 (372)
142 3un9_A NLR family member X1; l 99.3 1.5E-13 5.1E-18 136.4 -0.0 66 260-328 71-140 (372)
143 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.6E-16 121.8 10.5 104 337-449 12-118 (347)
144 2ifg_A High affinity nerve gro 99.2 3.6E-11 1.2E-15 118.0 10.8 100 318-425 12-117 (347)
145 4fdw_A Leucine rich hypothetic 99.2 1.2E-09 4E-14 109.4 21.3 233 213-469 136-381 (401)
146 4fdw_A Leucine rich hypothetic 99.1 5.1E-09 1.7E-13 104.7 18.4 89 350-447 293-383 (401)
147 2ra8_A Uncharacterized protein 98.9 1.8E-09 6.3E-14 106.2 7.4 204 236-469 107-341 (362)
148 2ra8_A Uncharacterized protein 98.9 3.9E-10 1.3E-14 111.0 1.8 86 314-422 252-341 (362)
149 4fs7_A Uncharacterized protein 98.8 1.7E-07 5.7E-12 93.5 19.1 55 158-222 71-127 (394)
150 1io0_A Tropomodulin; LRR prote 98.6 1.1E-08 3.9E-13 90.8 3.5 115 350-470 29-163 (185)
151 3rw6_A Nuclear RNA export fact 98.6 2E-08 6.8E-13 94.1 2.9 79 379-464 168-257 (267)
152 1io0_A Tropomodulin; LRR prote 98.5 4.8E-08 1.6E-12 86.7 3.0 17 258-274 33-50 (185)
153 4fs7_A Uncharacterized protein 98.5 3.5E-06 1.2E-10 83.8 16.3 100 352-463 292-393 (394)
154 4gt6_A Cell surface protein; l 98.4 2.9E-05 9.8E-10 77.1 22.4 101 160-271 66-170 (394)
155 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.1E-12 87.1 2.4 81 354-440 167-257 (267)
156 4h09_A Hypothetical leucine ri 98.1 0.0003 1E-08 69.1 21.6 77 159-247 47-124 (379)
157 4gt6_A Cell surface protein; l 98.1 8.1E-05 2.8E-09 73.8 17.2 284 158-470 87-390 (394)
158 3e4g_A ATP synthase subunit S, 97.7 1.6E-05 5.4E-10 69.2 2.6 34 188-222 62-95 (176)
159 3e4g_A ATP synthase subunit S, 97.6 3.3E-05 1.1E-09 67.1 4.0 85 358-444 62-149 (176)
160 4h09_A Hypothetical leucine ri 97.6 0.007 2.4E-07 59.2 20.5 260 182-468 41-343 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.0002 6.9E-09 63.3 5.9 112 355-468 39-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00019 6.5E-09 63.5 2.3 42 259-300 39-83 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0047 1.6E-07 50.7 6.7 54 385-446 12-67 (130)
164 3rfe_A Platelet glycoprotein I 95.5 0.032 1.1E-06 45.6 7.1 54 191-247 12-66 (130)
165 3ox7_P MH027; urokinase-type p 43.5 5.5 0.00019 20.4 0.2 9 37-45 6-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.9e-55 Score=474.36 Aligned_cols=432 Identities=28% Similarity=0.347 Sum_probs=235.3
Q ss_pred ccHHhHHHHHHhhhhCCCCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHhhhH
Q 041155 4 CIDEEREAVLTFKESLVDESGVLSSWGPEDEKRDCCKWTGVGCSNRTGHVIKLEIQPIDFDSFPLRVFPILLIITMTVGI 83 (471)
Q Consensus 4 c~~~e~~aLl~~k~~~~~~~~~l~sW~~~~~~~~~C~W~GV~C~~~~g~V~~L~L~~~~l~~~~~~~~~~~~~~~~~~~l 83 (471)
+.++||+|||+||+++.||. ++++|+. ++|||+|+||+|+ +|||++|+|++.++.|....+.+.+
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l--------- 73 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSL--------- 73 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHT---------
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhH---------
Confidence 56789999999999999998 9999973 4689999999998 6999999999877654100011111
Q ss_pred HHHHHHHHHHHHhhcCc--------------cccCCCCccCCCHH--HHHHHHHHHHhCcC--------CC---CCCCCC
Q 041155 84 RLLQQLFLLVILLQLEP--------------RVADSNNMIRCIDE--EREALLTFKESLVD--------ES---GVLSSW 136 (471)
Q Consensus 84 ~~l~~l~~~~~~~~~~~--------------~~~~~~~~~g~~p~--~~~~l~~l~~~~~~--------~~---~~l~~~ 136 (471)
..|++|+++++...+.. .....|.+.|.+|. .++.+..++..... +. ..++.+
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred hccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 11122222211111100 00122455555665 55444433321000 00 011111
Q ss_pred CCCCCCCCCCCc---------------------------ceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCCCC
Q 041155 137 GPEDEKRDRCKW---------------------------AGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRL 189 (471)
Q Consensus 137 ~~~~~~~~~~~~---------------------------~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L 189 (471)
.. .....+.. .+........++++|++++ |.+++.+|. ++++++|
T Consensus 154 ~~--L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~-l~~l~~L 225 (768)
T 3rgz_A 154 EV--LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS-----NNFSTGIPF-LGDCSAL 225 (768)
T ss_dssp SE--EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCS-----SCCCSCCCB-CTTCCSC
T ss_pred CE--EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcC-----CcCCCCCcc-cccCCCC
Confidence 00 00001111 1111111223455555554 344444444 4445555
Q ss_pred CEEeCCCCCCCCCCcCccCCCCC----------------------CCCeEeCCCCcccCCCCccccCC-CCCCEEEccCC
Q 041155 190 TYLDLSLNNFSGSPIPEFIGSLT----------------------KLSYLDLSFAEFEGPIPSHLGNL-SALQHLDLSLN 246 (471)
Q Consensus 190 ~~L~Ls~n~l~g~~ip~~l~~l~----------------------~L~~L~Ls~n~l~g~ip~~l~~l-~~L~~L~L~~n 246 (471)
++|++++|.+++. +|..+++++ +|++|++++|.++|.+|..+... ++|++|++++|
T Consensus 226 ~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 226 QHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp CEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred CEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 5555555555443 444444444 44444444555555555555543 66666666666
Q ss_pred CCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCC-cccEEECCCCc
Q 041155 247 HLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYST-SLQFLELSENN 325 (471)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~-~L~~L~Ls~N~ 325 (471)
.+... .+..++++++|++|++++|.+.|..+ ...++++++|++|++++|.+++.+|..+.++ + +|++|++++|.
T Consensus 305 ~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 305 HFYGA-VPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNL---SASLLTLDLSSNN 379 (768)
T ss_dssp EEEEC-CCGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSEEEECCCTTHHHH---TTTCSEEECCSSE
T ss_pred cCCCc-cchHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCccCccccHHHHhh---hcCCcEEEccCCC
Confidence 64322 22456777778888888777775521 2347777888888888887777777666655 3 55555555555
Q ss_pred CCCcccc--------------------------c-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCC
Q 041155 326 LTNSIYP--------------------------Y-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVP 374 (471)
Q Consensus 326 l~g~ip~--------------------------~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 374 (471)
++|.+|. . +|++|++++|.+++.+|..++.+++|++|++++|+++|.+|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 5544433 2 44455555555555555555555555555555555555555
Q ss_pred hhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchh
Q 041155 375 DFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNS 453 (471)
Q Consensus 375 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~ 453 (471)
..++.+++|++|++++|+++|.+|..+..++ +|++|++++|+++|.+|. ++.+++|++|++++|+++|.+|..
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~------~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCT------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCT------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCC------CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 5555555555555555555555555555554 566666666666666665 666666666666666666666666
Q ss_pred hhcCCCCCEEECcCCCC
Q 041155 454 IGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 454 l~~l~~L~~L~Ls~N~l 470 (471)
++.+++|++|++++|++
T Consensus 534 l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGGCTTCCEEECCSSEE
T ss_pred HcCCCCCCEEECCCCcc
Confidence 66666666666666654
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-48 Score=416.28 Aligned_cols=433 Identities=17% Similarity=0.159 Sum_probs=266.2
Q ss_pred HHhHHHHHHhhhhCCCCC--------CCCCCCCCCCCCCCCccc---cceeeCCCCCcEEEEEeCCCCCCCCCccccchh
Q 041155 6 DEEREAVLTFKESLVDES--------GVLSSWGPEDEKRDCCKW---TGVGCSNRTGHVIKLEIQPIDFDSFPLRVFPIL 74 (471)
Q Consensus 6 ~~e~~aLl~~k~~~~~~~--------~~l~sW~~~~~~~~~C~W---~GV~C~~~~g~V~~L~L~~~~l~~~~~~~~~~~ 74 (471)
..|++||.+||+++.++. ....+|.. ++|||.| +||+|+.. |||++|+|++.++.| .+.+.+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g---~lp~~l 101 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASG---RVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEE---EECGGG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCC---cCChHH
Confidence 469999999999986542 12447974 3689999 99999864 999999999988764 333333
Q ss_pred hhhHHhhhHHHHHHHHHHHHHhhcCccccC---------------------CCCccCCCHHHHHHHH-HHHHhCcC--CC
Q 041155 75 LIITMTVGIRLLQQLFLLVILLQLEPRVAD---------------------SNNMIRCIDEEREALL-TFKESLVD--ES 130 (471)
Q Consensus 75 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~---------------------~~~~~g~~p~~~~~l~-~l~~~~~~--~~ 130 (471)
+ .+..|+.|++..+.......... .+.+.+.+|..+..+. .+...... ..
T Consensus 102 ~------~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 102 G------QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp G------GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred h------cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 2 22333333333221100000000 0112222332222111 11110000 00
Q ss_pred C--CCCCCCCCCCCCCCCCcceeeeC--CCCCceEEEEeCCCCCCCCCcccc-----------------cchhhh--CCC
Q 041155 131 G--VLSSWGPEDEKRDRCKWAGVGCS--NRTGHVIKLEIQPIDFGSFPLRGT-----------------ISPALL--QLH 187 (471)
Q Consensus 131 ~--~l~~~~~~~~~~~~~~~~g~~~~--~~~~~l~~L~L~~~~l~~n~l~g~-----------------ip~~l~--~l~ 187 (471)
. ..............+...+ .+. ....++++|+|++ |.++|. +|+.++ +++
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~-----n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~ 249 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN-----SPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES-----CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcC-----CccccccccccccccccchhcccCchhhhhcccC
Confidence 0 0000000000111223334 222 1246789999998 677775 899988 999
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCc-ccC-CCCccccCC------CCCCEEEccCCCCCCCCChhhhcC
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE-FEG-PIPSHLGNL------SALQHLDLSLNHLFSVGNLDWLSH 259 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~-l~g-~ip~~l~~l------~~L~~L~L~~n~~~~~~~~~~l~~ 259 (471)
+|++|++++|.+.|. +|..++++++|++|++++|+ ++| .+|..++++ ++|++|++++|++...+....+++
T Consensus 250 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT
T ss_pred CCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhcc
Confidence 999999999999986 99999999999999999998 888 889888776 899999999998764443226888
Q ss_pred CCCCcEEEcCCccCCCCCc--------------------hhhhhCCCCC-CCEEEecCCCCCCCCcccccCCCCCCcccE
Q 041155 260 LSSLTYLDLGSNNLSRSTD--------------------WLQVVGNLPL-LTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 318 (471)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~--------------------~~~~l~~l~~-L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~ 318 (471)
+++|++|++++|.+.|..+ +|..++.+++ |++|++++|.++ .+|..+.... +++|++
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~-l~~L~~ 406 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS-VSVMSA 406 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC-SSCEEE
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc-cCccCE
Confidence 8888888888888875421 1223444444 555555555555 4454444330 025666
Q ss_pred EECCCCcCCCccccc------------cccEEEcccccCccCcCcc-ccCCCCCCEEeCcCCcCcccCChhccCC-----
Q 041155 319 LELSENNLTNSIYPY------------NLVLLGLDSNLLRGSIPVA-FKHMVSLSFLGLASNEFEGGVPDFFANM----- 380 (471)
Q Consensus 319 L~Ls~N~l~g~ip~~------------~L~~L~Ls~n~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~l----- 380 (471)
|++++|.+++.+|.. +|++|++++|.++ .+|.. +..+++|++|+|++|+++ .+|..+...
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENF 484 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEEC
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccc
Confidence 666666665544421 4566666666665 34433 334566666666666666 455433221
Q ss_pred ---CCCCEEeCcCCcCcccCcHHhh--hccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEEC------cCCcccc
Q 041155 381 ---CSLTMLNISDNKLRGHFPELIQ--NLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYL------ENNRLNG 448 (471)
Q Consensus 381 ---~~L~~L~Ls~N~l~g~ip~~l~--~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~L------s~N~l~g 448 (471)
++|++|+|++|+++ .+|..+. .++ +|++|+|++|++++ +|. ++.+++|++|++ ++|++.+
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLP------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCT------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCC------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 16666677766666 5666654 555 78888888888887 676 777888888888 4577778
Q ss_pred cCchhhhcCCCCCEEECcCCCC
Q 041155 449 FTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 449 ~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
.+|..++.+++|++|+|++|++
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC
T ss_pred cChHHHhcCCCCCEEECCCCcC
Confidence 8888888888888888888876
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.5e-48 Score=420.34 Aligned_cols=277 Identities=19% Similarity=0.212 Sum_probs=142.2
Q ss_pred CcccccchhhhCCCCCCEEeCCCCC-CCC-CCcCccCCCCC-------CCCeEeCCCCcccCCCCc--cccCCCCCCEEE
Q 041155 174 PLRGTISPALLQLHRLTYLDLSLNN-FSG-SPIPEFIGSLT-------KLSYLDLSFAEFEGPIPS--HLGNLSALQHLD 242 (471)
Q Consensus 174 ~l~g~ip~~l~~l~~L~~L~Ls~n~-l~g-~~ip~~l~~l~-------~L~~L~Ls~n~l~g~ip~--~l~~l~~L~~L~ 242 (471)
.+.|.+|..++++++|++|++++|. ++| . +|..+++++ +|++|+|++|.++ .+|. .++++++|++|+
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 4444444444444444444444444 443 2 343332222 4444444444444 4444 444455555555
Q ss_pred ccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCC-CCEEEecCCCCCCCCcccccCCCCCCcccEEEC
Q 041155 243 LSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPL-LTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLEL 321 (471)
Q Consensus 243 L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~-L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~L 321 (471)
+++|.+...+ .++++++|++|++++|.+... |..+..+++ |++|++++|.++ .+|..+..+. .++|+.|++
T Consensus 580 Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~l---p~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~-~~~L~~L~L 651 (876)
T 4ecn_A 580 CVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEI---PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS-VYVMGSVDF 651 (876)
T ss_dssp CTTSCCCBCC---CCCTTSEESEEECCSSCCSCC---CTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC-SSCEEEEEC
T ss_pred CCCCCcccch---hhcCCCcceEEECcCCccccc---hHHHhhccccCCEEECcCCCCC-cCchhhhccc-cCCCCEEEC
Confidence 5555443222 244445555555555555422 234555555 666666666555 4454444331 022666666
Q ss_pred CCCcCCCccccc----------cccEEEcccccCccCcCccc-cCCCCCCEEeCcCCcCcccCChhccCCC--------C
Q 041155 322 SENNLTNSIYPY----------NLVLLGLDSNLLRGSIPVAF-KHMVSLSFLGLASNEFEGGVPDFFANMC--------S 382 (471)
Q Consensus 322 s~N~l~g~ip~~----------~L~~L~Ls~n~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--------~ 382 (471)
++|.++|.+|.. +|+.|++++|.++ .+|..+ ..+++|+.|+|++|+++ .+|..+.... +
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence 666665554421 3555555555555 344433 25556666666666665 4554433221 5
Q ss_pred CCEEeCcCCcCcccCcHHhh--hccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcC------CcccccCchh
Q 041155 383 LTMLNISDNKLRGHFPELIQ--NLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLEN------NRLNGFTNNS 453 (471)
Q Consensus 383 L~~L~Ls~N~l~g~ip~~l~--~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~------N~l~g~ip~~ 453 (471)
|+.|+|++|+++ .+|..+. .++ +|+.|+|++|++++ +|. ++.+++|+.|+|++ |++.+.+|..
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLP------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCT------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccEEECCCCCCc-cchHHhhhccCC------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 666666666666 5555554 444 56666666666665 454 56666666666644 5566666666
Q ss_pred hhcCCCCCEEECcCCCC
Q 041155 454 IGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 454 l~~l~~L~~L~Ls~N~l 470 (471)
+..+++|+.|+|++|++
T Consensus 802 l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGGCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEECCCCCC
Confidence 66666666666666654
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5e-45 Score=356.15 Aligned_cols=298 Identities=30% Similarity=0.488 Sum_probs=208.3
Q ss_pred ccccHHhHHHHHHhhhhCCCCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEEeCCCCCCCCCccccchhhhh
Q 041155 2 IRCIDEEREAVLTFKESLVDESGVLSSWGPEDEKRDCCK--WTGVGCSNRT--GHVIKLEIQPIDFDSFPLRVFPILLII 77 (471)
Q Consensus 2 ~~c~~~e~~aLl~~k~~~~~~~~~l~sW~~~~~~~~~C~--W~GV~C~~~~--g~V~~L~L~~~~l~~~~~~~~~~~~~~ 77 (471)
+.|.++|++||++||+++.||. .+++|.. ++|||. |+||+|+..+ ++|+.|+|+++.
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~--------------- 61 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN--------------- 61 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC---------------
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCC---------------
Confidence 4699999999999999998886 7999964 358999 9999998654 677777765433
Q ss_pred HHhhhHHHHHHHHHHHHHhhcCccccCCCCccCCCHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCCCCCcceeeeCCCC
Q 041155 78 TMTVGIRLLQQLFLLVILLQLEPRVADSNNMIRCIDEEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSNRT 157 (471)
Q Consensus 78 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~g~~p~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 157 (471)
T Consensus 62 -------------------------------------------------------------------------------- 61 (313)
T 1ogq_A 62 -------------------------------------------------------------------------------- 61 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeCCCCCCCCCccc--ccchhhhCCCCCCEEeCCC-CCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccC
Q 041155 158 GHVIKLEIQPIDFGSFPLRG--TISPALLQLHRLTYLDLSL-NNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGN 234 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g--~ip~~l~~l~~L~~L~Ls~-n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~ 234 (471)
++| .+|+.+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..+.+
T Consensus 62 -----------------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 62 -----------------LPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp -----------------CSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred -----------------ccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 333 3444455555555555552 555543 5555555555555555555555555555555
Q ss_pred CCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCC-CCCEEEecCCCCCCCCcccccCCCCC
Q 041155 235 LSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLP-LLTTLYLYRCHLPPIVPLSLSNLNYS 313 (471)
Q Consensus 235 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~l~~n~l~g~~p~~l~~l~~~ 313 (471)
+++|++|++++|.+... .+..+.++++|++|++++|.+++. +|..++.++ +|++|++++|++++.+|..++.+
T Consensus 124 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--- 197 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--- 197 (313)
T ss_dssp CTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---
T ss_pred CCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---
Confidence 55555555554443211 112244444555555555555433 134566666 77777777777777777776665
Q ss_pred CcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 314 TSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 314 ~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
+ |++|++++|. +++.+|..+..+++|++|++++|++++.+|. +..+++|++|++++|++
T Consensus 198 ~-L~~L~Ls~N~-------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 198 N-LAFVDLSRNM-------------------LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp C-CSEEECCSSE-------------------EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred c-ccEEECcCCc-------------------ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 3 5555555554 4456777888999999999999999977766 78889999999999999
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCc-cccc
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNR-LNGF 449 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~-l~g~ 449 (471)
++.+|..+..++ +|++|++++|+++|.+|..+.+++|+.+++++|. +.|.
T Consensus 257 ~~~~p~~l~~l~------~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 257 YGTLPQGLTQLK------FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EECCCGGGGGCT------TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred cCcCChHHhcCc------CCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC
Confidence 999999998888 8999999999999999998889999999999997 6664
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.9e-42 Score=372.15 Aligned_cols=331 Identities=31% Similarity=0.486 Sum_probs=224.9
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCCCCCcceeeeCCCCCceEEEEeCCCCCCCCCcccc---cchhhhCCC
Q 041155 111 CIDEEREALLTFKESLVDESGVLSSWGPEDEKRDRCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGT---ISPALLQLH 187 (471)
Q Consensus 111 ~~p~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~---ip~~l~~l~ 187 (471)
..+.|..+|++||..+.++. .+++|. ...++|.|.||.|+ .++|+.|+|++ +.+.|. +|+.+.+++
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~-----~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS-----KPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT-----SCCCEEHHHHHHHTTTCT
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC-----CCcCCccCccChhHhccC
Confidence 35778999999999887776 888996 35689999999998 58999999998 567776 666555555
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCc--cccCCCCCCEEEccCC-------------------
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS--HLGNLSALQHLDLSLN------------------- 246 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~--~l~~l~~L~~L~L~~n------------------- 246 (471)
.|+.++++.+.+. .+|+.++++++|++|+|++|.++|.+|. .++++++|++|++++|
T Consensus 78 ~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 78 GLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 5555554444433 1334444555555555555555444444 4444555555555544
Q ss_pred ------CCCCCCChhh--hcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccE
Q 041155 247 ------HLFSVGNLDW--LSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 318 (471)
Q Consensus 247 ------~~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~ 318 (471)
.+.......+ +.++++|++|++++|.+.+..+ +..+++|++|++++|.+++.+|. ++++ ++|++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l---~~L~~ 227 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDC---SALQH 227 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTC---CSCCE
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccC---CCCCE
Confidence 4322211111 4455555555555555555421 25666777777777777766665 6666 67777
Q ss_pred EECCCCcCCCccccc-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCC-CCCCEEeCcCCc
Q 041155 319 LELSENNLTNSIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANM-CSLTMLNISDNK 392 (471)
Q Consensus 319 L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~Ls~N~ 392 (471)
|++++|.+++.+|.. +|++|++++|.++|.+|.. .+++|++|++++|+++|.+|..+... ++|++|++++|+
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 777777777666543 6777777777777766654 66777777777777777777777664 778888888888
Q ss_pred CcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC--CCCCCCCCEEECcCCcccccCchhhhcCC-CCCEEECcCCC
Q 041155 393 LRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQMS-KLRTLSLNGNS 469 (471)
Q Consensus 393 l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~--~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~L~Ls~N~ 469 (471)
+++.+|..++.++ +|++|++++|+++|.+|. ++.+++|++|++++|+++|.+|..+..++ +|++|++++|+
T Consensus 306 l~~~~p~~~~~l~------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 306 FYGAVPPFFGSCS------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp EEECCCGGGGGCT------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred CCCccchHHhcCC------CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 8877787777777 788888888888877775 77788888888888888888888877776 78888888876
Q ss_pred C
Q 041155 470 L 470 (471)
Q Consensus 470 l 470 (471)
+
T Consensus 380 l 380 (768)
T 3rgz_A 380 F 380 (768)
T ss_dssp E
T ss_pred c
Confidence 4
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.8e-40 Score=348.57 Aligned_cols=338 Identities=21% Similarity=0.291 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHhCcCCC--------CCCCCCCCCCCCCCCCCc---ceeeeCCCCCceEEEEeCCCCCCCCCcccccchh
Q 041155 114 EEREALLTFKESLVDES--------GVLSSWGPEDEKRDRCKW---AGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPA 182 (471)
Q Consensus 114 ~~~~~l~~l~~~~~~~~--------~~l~~~~~~~~~~~~~~~---~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~ 182 (471)
.+..+|.+++..+.+.. ....+|. ...++|.| .||.|+.. ++|+.|+|++ +.++|.+|++
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~-----~~l~g~lp~~ 100 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG-----FGASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT-----SCCEEEECGG
T ss_pred HHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC-----cccCCcCChH
Confidence 45667777776553221 1123575 35789999 99999765 7999999998 7899999999
Q ss_pred hhCCCCCCEEeCCCCCC------CC-------------------------------------------------------
Q 041155 183 LLQLHRLTYLDLSLNNF------SG------------------------------------------------------- 201 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l------~g------------------------------------------------------- 201 (471)
++++++|++|+|++|.+ .|
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 99999999999998854 11
Q ss_pred ---------------CCcCccCCCCCCCCeEeCCCCcccCC-----------------CCcccc--CCCCCCEEEccCCC
Q 041155 202 ---------------SPIPEFIGSLTKLSYLDLSFAEFEGP-----------------IPSHLG--NLSALQHLDLSLNH 247 (471)
Q Consensus 202 ---------------~~ip~~l~~l~~L~~L~Ls~n~l~g~-----------------ip~~l~--~l~~L~~L~L~~n~ 247 (471)
..+|..++++++|++|+|++|.++|. +|+.++ ++++|++|++++|.
T Consensus 181 ~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred cchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 01788899999999999999999986 999999 99999999999998
Q ss_pred CCCCCChhhhcCCCCCcEEEcCCcc-CCC-CCchhhhhCCC------CCCCEEEecCCCCCCCCcc--cccCCCCCCccc
Q 041155 248 LFSVGNLDWLSHLSSLTYLDLGSNN-LSR-STDWLQVVGNL------PLLTTLYLYRCHLPPIVPL--SLSNLNYSTSLQ 317 (471)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~l~~l------~~L~~L~l~~n~l~g~~p~--~l~~l~~~~~L~ 317 (471)
+... .+..++++++|++|++++|+ ++| . +|..++++ ++|++|++++|+++ .+|. .++++ ++|+
T Consensus 261 l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l---~~L~ 333 (636)
T 4eco_A 261 NLTK-LPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM---KKLG 333 (636)
T ss_dssp TCSS-CCTTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC---TTCC
T ss_pred CCcc-ChHHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC---CCCC
Confidence 5443 23568899999999999998 877 3 34556554 78888888888888 6777 77777 7888
Q ss_pred EEECCCCcCCCccccc----cccEEEcccccCccCcCccccCCCC-CCEEeCcCCcCcccCChhccCCC--CCCEEeCcC
Q 041155 318 FLELSENNLTNSIYPY----NLVLLGLDSNLLRGSIPVAFKHMVS-LSFLGLASNEFEGGVPDFFANMC--SLTMLNISD 390 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~----~L~~L~Ls~n~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L~Ls~ 390 (471)
+|++++|.++|.+|.. +|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++
T Consensus 334 ~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 334 MLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 8888888888777742 5555666666555 55555555555 555555555555 4554444332 444444444
Q ss_pred CcCcccCcHHhh-------hccC------------------CCCcCCccEEEcccCcCcccCCC--CCCC-------CCC
Q 041155 391 NKLRGHFPELIQ-------NLSS------------------GCTKNSLEMLYLSSNEITGSVPD--LGGF-------SSL 436 (471)
Q Consensus 391 N~l~g~ip~~l~-------~l~~------------------~~~~~~L~~L~L~~N~l~g~ip~--~~~l-------~~L 436 (471)
|++++.+|..+. .+.. ...+++|++|+|++|+++ .+|. +... ++|
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc
Confidence 444444443333 1110 001227888888888888 6665 3322 288
Q ss_pred CEEECcCCcccccCchhhh--cCCCCCEEECcCCCCC
Q 041155 437 KELYLENNRLNGFTNNSIG--QMSKLRTLSLNGNSLR 471 (471)
Q Consensus 437 ~~L~Ls~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~ 471 (471)
++|++++|+++ .+|..+. .+++|+.|+|++|+++
T Consensus 491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC
Confidence 89999999888 6788776 8899999999999874
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.9e-38 Score=321.62 Aligned_cols=301 Identities=24% Similarity=0.280 Sum_probs=261.0
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCc-CccCCCCCCCCeEeCCCCcccCCCCccccCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPI-PEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS 236 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~i-p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~ 236 (471)
+++++|+|++ |.+++..|..+.++++|++|++++|.+.+. + |..+.++++|++|+|++|.+++..|..+++++
T Consensus 30 ~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSL-----NSIAELNETSFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCS-----SCCCEECTTTTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecC-----CccCcCChhHhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 5789999998 688888889999999999999999999875 5 56789999999999999999988899999999
Q ss_pred CCCEEEccCCCCCCC-CChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCC-----
Q 041155 237 ALQHLDLSLNHLFSV-GNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNL----- 310 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l----- 310 (471)
+|++|++++|.+... .....+.++++|++|++++|.+.+... ...++++++|++|++++|.+++..|..+..+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 999999999986431 111237889999999999999988732 1237889999999999999998877665543
Q ss_pred --------------------------CCCCcccEEECCCCcCCCcccc--------------------------------
Q 041155 311 --------------------------NYSTSLQFLELSENNLTNSIYP-------------------------------- 332 (471)
Q Consensus 311 --------------------------~~~~~L~~L~Ls~N~l~g~ip~-------------------------------- 332 (471)
...++|++|++++|.+++.+|.
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 1225789999999988764432
Q ss_pred ------------ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHH
Q 041155 333 ------------YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPEL 400 (471)
Q Consensus 333 ------------~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 400 (471)
.++++|++++|.+++.+|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 15889999999999989999999999999999999999888999999999999999999999888888
Q ss_pred hhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 401 IQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 401 l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+..++ +|++|++++|++++.+|. ++.+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 343 ~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 343 FENLD------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp GTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hcCcc------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 88887 899999999999999888 999999999999999999877777899999999999999874
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-37 Score=337.81 Aligned_cols=331 Identities=23% Similarity=0.310 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHhCcCCCCCCCCCCCCC----CCCCCCCc------------ceeeeCCCCCceEEEEeCCCCCCCCCcc
Q 041155 113 DEEREALLTFKESLVDESGVLSSWGPED----EKRDRCKW------------AGVGCSNRTGHVIKLEIQPIDFGSFPLR 176 (471)
Q Consensus 113 p~~~~~l~~l~~~~~~~~~~l~~~~~~~----~~~~~~~~------------~g~~~~~~~~~l~~L~L~~~~l~~n~l~ 176 (471)
..+..+|.+++..+.++ +|.... ...+.|.| .|+.|+. .++|+.|+|++ +++.
T Consensus 268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~-----~~L~ 336 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG-----FGAK 336 (876)
T ss_dssp HHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----TCCE
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----CCCC
Confidence 46788999999987544 564321 12234999 9999976 57899999998 6889
Q ss_pred cccchhhhCCCCCCEEeC-CCCCCCCC-----------------------------------------------------
Q 041155 177 GTISPALLQLHRLTYLDL-SLNNFSGS----------------------------------------------------- 202 (471)
Q Consensus 177 g~ip~~l~~l~~L~~L~L-s~n~l~g~----------------------------------------------------- 202 (471)
|.+|+.++++++|++|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 66654332
Q ss_pred ----------------------CcCccCCCCCCCCeEeCCCCcccC-----------------CCCcccc--CCCCCCEE
Q 041155 203 ----------------------PIPEFIGSLTKLSYLDLSFAEFEG-----------------PIPSHLG--NLSALQHL 241 (471)
Q Consensus 203 ----------------------~ip~~l~~l~~L~~L~Ls~n~l~g-----------------~ip~~l~--~l~~L~~L 241 (471)
.+|..++++++|++|+|++|.++| .+|+.++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 077888889999999999999998 3898887 99999999
Q ss_pred EccCCCCCCCCChhhhcCCCCCcEEEcCCcc-CCC-CCchhhhhC-------CCCCCCEEEecCCCCCCCCcc--cccCC
Q 041155 242 DLSLNHLFSVGNLDWLSHLSSLTYLDLGSNN-LSR-STDWLQVVG-------NLPLLTTLYLYRCHLPPIVPL--SLSNL 310 (471)
Q Consensus 242 ~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~l~-------~l~~L~~L~l~~n~l~g~~p~--~l~~l 310 (471)
+|++|.+.... +..++++++|++|++++|+ ++| . +|..++ .+++|++|++++|+++ .+|. .++++
T Consensus 497 ~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~--iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 497 ELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572 (876)
T ss_dssp EEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHH--HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred ECcCCCCCccC-hHHHhCCCCCCEEECcCCCCccccc--chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence 99998854332 2568888888888888887 776 2 123333 3346777777777766 5666 66666
Q ss_pred CCCCcccEEECCCCcCCCccccc----cccEEEcccccCccCcCccccCCCC-CCEEeCcCCcCcccCChhccCCC----
Q 041155 311 NYSTSLQFLELSENNLTNSIYPY----NLVLLGLDSNLLRGSIPVAFKHMVS-LSFLGLASNEFEGGVPDFFANMC---- 381 (471)
Q Consensus 311 ~~~~~L~~L~Ls~N~l~g~ip~~----~L~~L~Ls~n~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~~l~~l~---- 381 (471)
++|+.|++++|.++ .+|.. +|+.|++++|.++ .+|..+..+++ |++|+|++|+++ .+|..+..++
T Consensus 573 ---~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 573 ---VKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp ---TTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred ---CCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 66666666666666 55532 4555555555555 55555555555 555555555555 4444433322
Q ss_pred ---------------------------CCCEEeCcCCcCcccCcHHhh-hccC-------------------------CC
Q 041155 382 ---------------------------SLTMLNISDNKLRGHFPELIQ-NLSS-------------------------GC 408 (471)
Q Consensus 382 ---------------------------~L~~L~Ls~N~l~g~ip~~l~-~l~~-------------------------~~ 408 (471)
+|+.|++++|+++ .+|..+. .++. +.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 3444444444444 3444332 2220 00
Q ss_pred CcCCccEEEcccCcCcccCCC-CC--CCCCCCEEECcCCcccccCchhhhcCCCCCEEECcC
Q 041155 409 TKNSLEMLYLSSNEITGSVPD-LG--GFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNG 467 (471)
Q Consensus 409 ~~~~L~~L~L~~N~l~g~ip~-~~--~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 467 (471)
.+++|++|+|++|+++ .+|. +. .+++|+.|+|++|++++ +|..++.+++|+.|+|++
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 0114555555555555 4444 43 55566666666666655 455555666666666654
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.3e-38 Score=307.04 Aligned_cols=294 Identities=28% Similarity=0.460 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCCCCC--cceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCC
Q 041155 110 RCIDEEREALLTFKESLVDESGVLSSWGPEDEKRDRCK--WAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLH 187 (471)
Q Consensus 110 g~~p~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~ 187 (471)
+|.|.+..+|.+++..+.++. .+.+|.. ..++|. |.|+.|.... ...
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~---------------------------~~~ 50 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDT---------------------------QTY 50 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSS---------------------------SCC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCC---------------------------CCc
Confidence 578999999999999886554 6778853 457888 9999995321 013
Q ss_pred CCCEEeCCCCCCCC--CCcCccCCCCCCCCeEeCCC-CcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCc
Q 041155 188 RLTYLDLSLNNFSG--SPIPEFIGSLTKLSYLDLSF-AEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLT 264 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g--~~ip~~l~~l~~L~~L~Ls~-n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 264 (471)
++++|++++|.++| . +|..++++++|++|++++ |.+++.+|..++++++|++|++++|.+... .+..+.++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence 57788899999998 6 899999999999999994 999999999999999999999999996522 224588899999
Q ss_pred EEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCC-cccEEECCCCcCCCccccccccEEEcccc
Q 041155 265 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYST-SLQFLELSENNLTNSIYPYNLVLLGLDSN 343 (471)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~-~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n 343 (471)
+|++++|.+++.. +..++.+++|++|++++|++++.+|..++.+ + +|++|++++|.++
T Consensus 129 ~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~~L~~L~L~~N~l~---------------- 187 (313)
T 1ogq_A 129 TLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSF---SKLFTSMTISRNRLT---------------- 187 (313)
T ss_dssp EEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGCC---CTTCCEEECCSSEEE----------------
T ss_pred EEeCCCCccCCcC--ChHHhcCCCCCeEECcCCcccCcCCHHHhhh---hhcCcEEECcCCeee----------------
Confidence 9999999988762 4578888999999999999988888888877 5 6666666666554
Q ss_pred cCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcC
Q 041155 344 LLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEI 423 (471)
Q Consensus 344 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l 423 (471)
+.+|..+..++ |++|++++|++++.+|..+..+++|++|++++|++++.+|. +..++ +|++|++++|++
T Consensus 188 ---~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~------~L~~L~Ls~N~l 256 (313)
T 1ogq_A 188 ---GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK------NLNGLDLRNNRI 256 (313)
T ss_dssp ---EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT------TCCEEECCSSCC
T ss_pred ---ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC------CCCEEECcCCcc
Confidence 56777788887 99999999999999999999999999999999999987776 66565 899999999999
Q ss_pred cccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCC
Q 041155 424 TGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNS 469 (471)
Q Consensus 424 ~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 469 (471)
+|.+|. ++.+++|++|++++|+++|.+|.. +.+++|+.+++++|+
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 999998 999999999999999999999986 889999999999997
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-35 Score=312.76 Aligned_cols=296 Identities=24% Similarity=0.245 Sum_probs=267.3
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
+++.|++++ |.+++..+..+..+++|++|++++|.++ .+|..++++++|++|++++|.+++..|..+.++++|
T Consensus 255 ~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 255 SVESINLQK-----HYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp EEEEEECTT-----CCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred ceeEEEeec-----CccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 688999988 6777777777999999999999999998 489999999999999999999998888899999999
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccE
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 318 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~ 318 (471)
++|++++|.+........+.++++|++|++++|.+.+....+..++.+++|++|++++|.+.+..|..+..+ ++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~ 404 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC---PQLEL 404 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC---TTCSE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC---ccCCe
Confidence 999999998653333345889999999999999998874334578999999999999999999888888888 99999
Q ss_pred EECCCCcCCCccccc------cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCccc---CChhccCCCCCCEEeCc
Q 041155 319 LELSENNLTNSIYPY------NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG---VPDFFANMCSLTMLNIS 389 (471)
Q Consensus 319 L~Ls~N~l~g~ip~~------~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~---ip~~l~~l~~L~~L~Ls 389 (471)
|++++|.+++..|.. +|++|++++|.+++..|..++.+++|++|++++|++++. .+..+..+++|++|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 999999999876652 899999999999999999999999999999999999873 33678999999999999
Q ss_pred CCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCC
Q 041155 390 DNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 468 (471)
Q Consensus 390 ~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 468 (471)
+|++++..|..+..++ +|++|++++|++++.+|. +..++.| +|++++|++++.+|..+..+++|+.|++++|
T Consensus 485 ~n~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLK------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp TSCCCEECTTTTTTCT------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CCccCccChhhhcccc------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 9999998899998888 899999999999999998 9999999 9999999999999999999999999999999
Q ss_pred CCC
Q 041155 469 SLR 471 (471)
Q Consensus 469 ~l~ 471 (471)
+++
T Consensus 558 ~~~ 560 (606)
T 3t6q_A 558 PLD 560 (606)
T ss_dssp CEE
T ss_pred Ccc
Confidence 863
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-35 Score=300.91 Aligned_cols=295 Identities=21% Similarity=0.225 Sum_probs=259.9
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
.+++.|+|++ |.+++..|..|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+..|.++++
T Consensus 32 ~~l~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGK-----NRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCC-----CccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 4578999998 688887788999999999999999999975 7889999999999999999999544456889999
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|++|++++|.+.... ...+.++++|++|++++|.+.+.. +..+..+++|++|++++|++++..+..+.++ ++|+
T Consensus 106 L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~ 179 (477)
T 2id5_A 106 LTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNLTSIPTEALSHL---HGLI 179 (477)
T ss_dssp CCEEECTTSCCCEEC-TTTTTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCCCSSCCHHHHTTC---TTCC
T ss_pred CCEEECCCCccccCC-hhHccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCcCcccChhHhccc---CCCc
Confidence 999999999975443 245889999999999999998763 3578899999999999999998777778888 9999
Q ss_pred EEECCCCcCCCccccc-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCc
Q 041155 318 FLELSENNLTNSIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNK 392 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 392 (471)
.|++++|.+.+..+.. +|++|++++|.+.+.+|..+....+|++|++++|++++..+..+..+++|+.|+|++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 9999999998765532 89999999999999999888788899999999999995433678999999999999999
Q ss_pred CcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 393 LRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 393 l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+++..+..+..++ +|++|+|++|++++..|. +..+++|++|++++|++++..+..+..+++|+.|+|++|++
T Consensus 260 l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 260 ISTIEGSMLHELL------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCEECTTSCTTCT------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCccChhhccccc------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 9987777777777 899999999999999888 99999999999999999988888889999999999999986
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=303.79 Aligned_cols=295 Identities=22% Similarity=0.282 Sum_probs=174.5
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccC-CCCccccCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG-PIPSHLGNL 235 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g-~ip~~l~~l 235 (471)
..++++|++++ |.+++..|..+.++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..++++
T Consensus 44 l~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 44 LSKLRILIISH-----NRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp CTTCCEEECCS-----SCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred cccccEEecCC-----CccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhhhccC
Confidence 35677777777 5677666777777777777777777777 26665 67777777777777776 467777777
Q ss_pred CCCCEEEccCCCCCCCCChhhhcCCCCC--cEEEcCCccC--CCCCchhhhhCCC-------------------------
Q 041155 236 SALQHLDLSLNHLFSVGNLDWLSHLSSL--TYLDLGSNNL--SRSTDWLQVVGNL------------------------- 286 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~~~~~~l~~l------------------------- 286 (471)
++|++|++++|.+... .+..+++| ++|++++|.+ .+. .+..+..+
T Consensus 115 ~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~--~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 115 SQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188 (520)
T ss_dssp TTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSSC--CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTT
T ss_pred CcceEEEecCcccchh----hccccccceeeEEEeeccccccccc--ccccccccccceEEEEeccCcchhhhhhhhhhc
Confidence 7777777777775442 25666666 8888887777 332 12223221
Q ss_pred ----------------------------------------------------------CCCCEEEecCCCCCCCCcccc-
Q 041155 287 ----------------------------------------------------------PLLTTLYLYRCHLPPIVPLSL- 307 (471)
Q Consensus 287 ----------------------------------------------------------~~L~~L~l~~n~l~g~~p~~l- 307 (471)
++|++|++++|+++|.+|..+
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred ccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence 267777888888877777666
Q ss_pred ----cCCCCCCcccEEECCCCcC--------------------------CCccc-c--ccccEEEcccccCccCcCcccc
Q 041155 308 ----SNLNYSTSLQFLELSENNL--------------------------TNSIY-P--YNLVLLGLDSNLLRGSIPVAFK 354 (471)
Q Consensus 308 ----~~l~~~~~L~~L~Ls~N~l--------------------------~g~ip-~--~~L~~L~Ls~n~l~g~ip~~l~ 354 (471)
+++ ++|+.++++.|.+ .+... . .+|++|++++|++++.+|..++
T Consensus 269 ~~~~~~l---~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 269 DYSGTSL---KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CCCSCCC---CEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hcccccC---ceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc
Confidence 333 3333333222222 11100 1 0444455555555544444444
Q ss_pred CCCCCCEEeCcCCcCcc--cCChhccCCCCCCEEeCcCCcCcccCcHH-hhhccCC----------------CCcCCccE
Q 041155 355 HMVSLSFLGLASNEFEG--GVPDFFANMCSLTMLNISDNKLRGHFPEL-IQNLSSG----------------CTKNSLEM 415 (471)
Q Consensus 355 ~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~~----------------~~~~~L~~ 415 (471)
.+++|++|++++|++++ .+|..++.+++|++|++++|++++.+|.. +..++.. ...++|++
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~ 425 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV 425 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCE
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCE
Confidence 55555555555555543 33444444445555555555444433332 1111100 00026777
Q ss_pred EEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchh-hhcCCCCCEEECcCCCCC
Q 041155 416 LYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNS-IGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 416 L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~ 471 (471)
|++++|+++ .+|. +..+++|++|++++|++++ +|.. +..+++|++|++++|+++
T Consensus 426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence 777777777 5666 6677888888888888874 5544 777888888888888763
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-34 Score=304.99 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=71.0
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccC-CCCccccCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG-PIPSHLGNL 235 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g-~ip~~l~~l 235 (471)
..++++|++++ |.+++..|..|+++++|++|++++|.+++. .|..++++++|++|++++|.+++ .+|..++++
T Consensus 79 l~~L~~L~Ls~-----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l 152 (606)
T 3vq2_A 79 LHHLSNLILTG-----NPIQSFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152 (606)
T ss_dssp CTTCCEEECTT-----CCCCCCCTTSSTTCTTCCEEECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC
T ss_pred hhhcCEeECCC-----CcccccChhhcCCcccCCEEEccCCccccc-cccccCCCCCCCEEeCCCCcccceechHhHhhc
Confidence 46788888887 677777788888888888888888888864 55678888888888888888875 678888888
Q ss_pred CCCCEEEccCCCCC
Q 041155 236 SALQHLDLSLNHLF 249 (471)
Q Consensus 236 ~~L~~L~L~~n~~~ 249 (471)
++|++|++++|++.
T Consensus 153 ~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 153 TNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEEccCCcce
Confidence 88888888888754
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-34 Score=304.06 Aligned_cols=296 Identities=23% Similarity=0.187 Sum_probs=154.9
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
++++|++++ |.+++..|..|.++++|++|++++|.+++. .|..++++++|++|++++|.+++..|..++++++|
T Consensus 58 ~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 58 NLTFLDLTR-----CQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TCSEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred cceEEECCC-----CccceeChhhccCccccCeeeCCCCccccc-ChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 444455444 344444444455555555555555555443 44445555555555555555543334444555555
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCC--EEEecCCCCCCCCcccccCC------
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLT--TLYLYRCHLPPIVPLSLSNL------ 310 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~--~L~l~~n~l~g~~p~~l~~l------ 310 (471)
++|++++|.+.....+. +..+++|++|++++|.+++.+ +..++.+++|+ +|++++|.+++..|..+...
T Consensus 132 ~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLS--KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp CEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEEC--HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEECCCCcccccCccc-ccCCcccCEEEcccCcccccC--hhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 55555555443322212 222455555555555554432 23444455555 45555555544433322110
Q ss_pred -CC-----------------------------------------CCcccEEECCCCcCCCccccc-----cccEEEcccc
Q 041155 311 -NY-----------------------------------------STSLQFLELSENNLTNSIYPY-----NLVLLGLDSN 343 (471)
Q Consensus 311 -~~-----------------------------------------~~~L~~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n 343 (471)
.. ..+|+.|++++|.+++..+.. +|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 00 003444444444444433321 4555555555
Q ss_pred cCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHH-hhhccCCCCcCCccEEEcccCc
Q 041155 344 LLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPEL-IQNLSSGCTKNSLEMLYLSSNE 422 (471)
Q Consensus 344 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~~~~~~~L~~L~L~~N~ 422 (471)
.++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|.. +..++ +|++|++++|.
T Consensus 289 ~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~------~L~~L~l~~n~ 361 (606)
T 3t6q_A 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE------NLRELDLSHDD 361 (606)
T ss_dssp CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT------TCCEEECCSSC
T ss_pred ccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC------cCCEEECCCCc
Confidence 555 45555555555555555555555544555555555555666555555554432 44444 67777777777
Q ss_pred CcccC--CC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 423 ITGSV--PD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 423 l~g~i--p~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+++.. |. ++.+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 76654 44 67777777777777777777777777777777777777764
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-34 Score=295.65 Aligned_cols=280 Identities=21% Similarity=0.262 Sum_probs=242.1
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCC-ccccCCCCCCEEEccCCCCCCCCChhh
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIP-SHLGNLSALQHLDLSLNHLFSVGNLDW 256 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~L~~n~~~~~~~~~~ 256 (471)
.+|. + .++|++|++++|.+++. .|..++++++|++|++++|.+.+.+| ..|.++++|++|++++|.+.... +..
T Consensus 24 ~lp~-l--~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~ 98 (455)
T 3v47_A 24 QVPE-L--PAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGA 98 (455)
T ss_dssp SCCC-C--CTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTT
T ss_pred cCCC-C--CCccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhh
Confidence 4555 2 37899999999999975 78899999999999999999987774 57899999999999999975442 245
Q ss_pred hcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCccc-ccCCCCCCcccEEECCCCcCCCccccc--
Q 041155 257 LSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLS-LSNLNYSTSLQFLELSENNLTNSIYPY-- 333 (471)
Q Consensus 257 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~-l~~l~~~~~L~~L~Ls~N~l~g~ip~~-- 333 (471)
++++++|++|++++|.+++.......++.+++|++|++++|.+++..|.. +.++ ++|++|++++|.+++..|..
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM---RRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC---TTCCEEECTTCCBSCCCTTTSG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC---CcccEEeCCCCcccccChhhhh
Confidence 89999999999999999885211224889999999999999999988876 7888 99999999999998866531
Q ss_pred -------------------------------------cccEEEcccccCccCcCccccC---------------------
Q 041155 334 -------------------------------------NLVLLGLDSNLLRGSIPVAFKH--------------------- 355 (471)
Q Consensus 334 -------------------------------------~L~~L~Ls~n~l~g~ip~~l~~--------------------- 355 (471)
+|++|++++|.+++.+|..+..
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 4788888888888766654422
Q ss_pred ------------------CCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEE
Q 041155 356 ------------------MVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLY 417 (471)
Q Consensus 356 ------------------l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~ 417 (471)
.++|++|++++|++++.+|..++.+++|++|++++|++++..|..+..++ +|++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~ 329 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT------HLLKLN 329 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEE
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc------cCCEEE
Confidence 25799999999999998999999999999999999999988888888887 899999
Q ss_pred cccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 418 LSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 418 L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+++|++++..|. ++.+++|++|++++|++++..|..+..+++|++|+|++|+++
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 999999988887 999999999999999999999999999999999999999874
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-34 Score=304.41 Aligned_cols=155 Identities=26% Similarity=0.354 Sum_probs=94.7
Q ss_pred CcccEEECCCCcCCCcccc--------ccccEEEcccccCccCcC--ccccCCCCCCEEeCcCCcCcccCChhccCCCCC
Q 041155 314 TSLQFLELSENNLTNSIYP--------YNLVLLGLDSNLLRGSIP--VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSL 383 (471)
Q Consensus 314 ~~L~~L~Ls~N~l~g~ip~--------~~L~~L~Ls~n~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 383 (471)
++|++|++++|.+++.+|. .+|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L 412 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence 4444555555555443321 045555555555543211 23555566666666666665 455555555666
Q ss_pred CEEeCcCCcCcccCcHHh----hhcc--------CCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCc
Q 041155 384 TMLNISDNKLRGHFPELI----QNLS--------SGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 384 ~~L~Ls~N~l~g~ip~~l----~~l~--------~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
++|++++|++++ +|..+ ..+. ....+++|++|++++|+++ .+|..+.+++|++|++++|++++.+|
T Consensus 413 ~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 413 RFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCT
T ss_pred cEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCH
Confidence 666666665542 22111 1000 0012347788888888887 67776678899999999999999888
Q ss_pred hhhhcCCCCCEEECcCCCCC
Q 041155 452 NSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 452 ~~l~~l~~L~~L~Ls~N~l~ 471 (471)
..+..+++|++|++++|+++
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 491 GIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TGGGGCTTCCEEECCSSCBC
T ss_pred HHHhcCcccCEEEecCCCcc
Confidence 88999999999999999864
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-34 Score=304.28 Aligned_cols=300 Identities=23% Similarity=0.266 Sum_probs=208.6
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS 236 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~ 236 (471)
..++++|++++ |.+++..|..|.++++|++|++++|.+++. .|..++++++|++|++++|.+++..|..+++++
T Consensus 55 l~~L~~L~Ls~-----n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 55 FSELQWLDLSR-----CEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp CTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred CccCcEEeCCC-----CcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 46789999998 678877788899999999999999999975 788999999999999999999877668899999
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCc-hhh----------------------------------
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTD-WLQ---------------------------------- 281 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~---------------------------------- 281 (471)
+|++|++++|.+.....+..++++++|++|++++|++++.+. ...
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 999999999997655545679999999999999998776421 000
Q ss_pred --------------------------------------------------------------------------------
Q 041155 282 -------------------------------------------------------------------------------- 281 (471)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (471)
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence
Q ss_pred -------------hhCCCCCCCEEEecCCCCCCCCcccccCC-------------------CCCCcccEEECCCCcCCCc
Q 041155 282 -------------VVGNLPLLTTLYLYRCHLPPIVPLSLSNL-------------------NYSTSLQFLELSENNLTNS 329 (471)
Q Consensus 282 -------------~l~~l~~L~~L~l~~n~l~g~~p~~l~~l-------------------~~~~~L~~L~Ls~N~l~g~ 329 (471)
.+..+++|++|++++|.+ +.+|. + .+ ..+++|++|++++|.+++.
T Consensus 289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 365 (606)
T 3vq2_A 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS 365 (606)
T ss_dssp EEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEE
T ss_pred EEEecCccchhhhhccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCC
Confidence 011122333444444433 22221 0 11 1124555555555555443
Q ss_pred c--ccc----------------------------cccEEEcccccCccCcC-ccccCCCCCCEEeCcCCcCcccCChhcc
Q 041155 330 I--YPY----------------------------NLVLLGLDSNLLRGSIP-VAFKHMVSLSFLGLASNEFEGGVPDFFA 378 (471)
Q Consensus 330 i--p~~----------------------------~L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 378 (471)
. |.. +|++|++++|.+++..| ..+..+++|++|++++|++++.+|..++
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 1 110 44555555555555444 4555566666666666666665666666
Q ss_pred CCCCCCEEeCcCCcCccc-CcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhc
Q 041155 379 NMCSLTMLNISDNKLRGH-FPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQ 456 (471)
Q Consensus 379 ~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~ 456 (471)
.+++|++|++++|++++. +|..++.++ +|++|++++|++++.+|. ++.+++|++|++++|++++.+|..+..
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTT------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCC------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 666666666666666653 455555555 788888888888887777 888888888888888888888888888
Q ss_pred CCCCCEEECcCCCCC
Q 041155 457 MSKLRTLSLNGNSLR 471 (471)
Q Consensus 457 l~~L~~L~Ls~N~l~ 471 (471)
+++|++|+|++|+++
T Consensus 520 l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred CCcCCEEECCCCcCc
Confidence 888888888888764
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-34 Score=301.92 Aligned_cols=289 Identities=25% Similarity=0.336 Sum_probs=185.5
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccC-CCCccccCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG-PIPSHLGNLS 236 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g-~ip~~l~~l~ 236 (471)
+++++|++++ |.+++..|..+.++++|++|++++|.++ .+|.. .+++|++|++++|++++ .+|..+++++
T Consensus 76 ~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 76 SELRVLRLSH-----NRIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TTCCEEECCS-----CCCCEECTTTTTTCTTCCEEECTTSCCC--EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred CCccEEECCC-----CCCCcCCHHHhCCCCCCCEEECCCCcCC--ccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 4566666666 4566555666666666666666666666 25554 56666666666666664 3456666666
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCC--cEEEcCCccC--CCCCchhhhhCCC--------------------------
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSL--TYLDLGSNNL--SRSTDWLQVVGNL-------------------------- 286 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L--~~L~Ls~n~l--~~~~~~~~~l~~l-------------------------- 286 (471)
+|++|++++|.+.... +..+++| ++|++++|.+ ++.. +..+..+
T Consensus 147 ~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~--~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l 220 (562)
T 3a79_B 147 KLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHIKGGE--TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220 (562)
T ss_dssp TCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCCCSSS--CCEEEECCEEEEEEEECSSSCCCCCCEEEESSE
T ss_pred cccEEecCCCccccCc----hhhhhhceeeEEEeecccccccccC--cccccccCcceEEEEecCccchhhhhhhccccc
Confidence 6666666666654322 3333444 6666666666 3331 1111111
Q ss_pred -------------------------------------------------------CCCCEEEecCCCCCCCCcccc----
Q 041155 287 -------------------------------------------------------PLLTTLYLYRCHLPPIVPLSL---- 307 (471)
Q Consensus 287 -------------------------------------------------------~~L~~L~l~~n~l~g~~p~~l---- 307 (471)
++|++|++++|.++|.+|..+
T Consensus 221 ~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300 (562)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC
T ss_pred ceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc
Confidence 156667777777777666554
Q ss_pred -cCC---------------------------------------------CCCCcccEEECCCCcCCCccccc-----ccc
Q 041155 308 -SNL---------------------------------------------NYSTSLQFLELSENNLTNSIYPY-----NLV 336 (471)
Q Consensus 308 -~~l---------------------------------------------~~~~~L~~L~Ls~N~l~g~ip~~-----~L~ 336 (471)
.++ ..+++|++|++++|.+++.+|.. +|+
T Consensus 301 ~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 380 (562)
T 3a79_B 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380 (562)
T ss_dssp SCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC
T ss_pred cccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCC
Confidence 000 12256677777777776655543 667
Q ss_pred EEEcccccCcc--CcCccccCCCCCCEEeCcCCcCcccCChh-ccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCc
Q 041155 337 LLGLDSNLLRG--SIPVAFKHMVSLSFLGLASNEFEGGVPDF-FANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413 (471)
Q Consensus 337 ~L~Ls~n~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L 413 (471)
+|++++|++++ .+|..++.+++|++|++++|++++.+|.. +..+++|++|++++|++++.+|..+. + +|
T Consensus 381 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~------~L 452 (562)
T 3a79_B 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P------KV 452 (562)
T ss_dssp EEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T------TC
T ss_pred EEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C------cC
Confidence 77777777765 34455666777777777777777655543 55667777777777777666555432 2 78
Q ss_pred cEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchh-hhcCCCCCEEECcCCCCC
Q 041155 414 EMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNS-IGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 414 ~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~ 471 (471)
++|++++|+++ .+|. +..+++|++|++++|+++ .+|.. +..+++|++|++++|+++
T Consensus 453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 89999999888 5666 778899999999999998 45655 888999999999999874
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=298.44 Aligned_cols=272 Identities=21% Similarity=0.243 Sum_probs=220.9
Q ss_pred CCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCC
Q 041155 156 RTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNL 235 (471)
Q Consensus 156 ~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l 235 (471)
...++++|++++ |.++ .+|.. .+++|++|++++|.+++..+|..++++++|++|++++|.+++ ..+..+
T Consensus 67 ~l~~L~~L~Ls~-----N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l 135 (520)
T 2z7x_B 67 FNQELEYLDLSH-----NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI 135 (520)
T ss_dssp TCTTCCEEECCS-----SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGG
T ss_pred cccCCCEEecCC-----Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccc
Confidence 357899999999 6777 67876 899999999999999974488999999999999999999986 457778
Q ss_pred CCC--CEEEccCCCC--CCCCChhhhcC----------------------------------------------------
Q 041155 236 SAL--QHLDLSLNHL--FSVGNLDWLSH---------------------------------------------------- 259 (471)
Q Consensus 236 ~~L--~~L~L~~n~~--~~~~~~~~l~~---------------------------------------------------- 259 (471)
++| ++|++++|.+ .... +..+..
T Consensus 136 ~~L~L~~L~l~~n~l~~~~~~-~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 214 (520)
T 2z7x_B 136 AHLNISKVLLVLGETYGEKED-PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214 (520)
T ss_dssp TTSCEEEEEEEECTTTTSSCC-TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH
T ss_pred ccceeeEEEeecccccccccc-cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh
Confidence 888 9999999986 1111 111222
Q ss_pred -------------------------------CCCCcEEEcCCccCCCC-Cchh---------------------------
Q 041155 260 -------------------------------LSSLTYLDLGSNNLSRS-TDWL--------------------------- 280 (471)
Q Consensus 260 -------------------------------l~~L~~L~Ls~n~l~~~-~~~~--------------------------- 280 (471)
.++|++|++++|.++|. +...
T Consensus 215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~ 294 (520)
T 2z7x_B 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294 (520)
T ss_dssp GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHH
T ss_pred hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhh
Confidence 12677888888877753 2100
Q ss_pred -hh----------------------hCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCC--ccccc--
Q 041155 281 -QV----------------------VGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTN--SIYPY-- 333 (471)
Q Consensus 281 -~~----------------------l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g--~ip~~-- 333 (471)
.. ...+++|++|++++|++++.+|..++.+ ++|++|++++|++++ .+|..
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL---TELETLILQMNQLKELSKIAEMTT 371 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC---SSCCEEECCSSCCCBHHHHHHHHT
T ss_pred hhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccC---CCCCEEEccCCccCccccchHHHh
Confidence 00 1677889999999999999888888888 899999999999987 44432
Q ss_pred ---cccEEEcccccCccCcCcc-ccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCC
Q 041155 334 ---NLVLLGLDSNLLRGSIPVA-FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCT 409 (471)
Q Consensus 334 ---~L~~L~Ls~n~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~ 409 (471)
+|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..++
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~---- 444 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE---- 444 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT----
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC----
Confidence 8999999999999877764 78889999999999999988887764 78999999999999 8998888887
Q ss_pred cCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCc
Q 041155 410 KNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 410 ~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
+|++|++++|+++...+. +..+++|++|++++|.+++..+
T Consensus 445 --~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 445 --ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp --TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 899999999999954444 8999999999999999998755
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=313.98 Aligned_cols=301 Identities=22% Similarity=0.234 Sum_probs=233.7
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCc-CccCCCCCCCCeEeCCCCcccCCCCccccCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPI-PEFIGSLTKLSYLDLSFAEFEGPIPSHLGNL 235 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~i-p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l 235 (471)
.+++++|+|++ |.+++..|..+.++++|++|+|++|.+.+. + |..++++++|++|+|++|.+++..|..|.++
T Consensus 23 p~~l~~LdLs~-----N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSF-----NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEES-----CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCcCEEECCC-----CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 45788899888 677777788888888899999988877665 5 6778888889999998888887778888888
Q ss_pred CCCCEEEccCCCCCCC-CChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCC
Q 041155 236 SALQHLDLSLNHLFSV-GNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYST 314 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~ 314 (471)
++|++|++++|.+... ....+++++++|++|++++|.+.+... +..++++++|++|++++|.+++..|..+..+.. +
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~-~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG-K 174 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH-C
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeCHHHcccccC-C
Confidence 8899999888886542 222347888888888888888887631 346788888888888888888877777665421 4
Q ss_pred cccEEECCCCcCCCccccc-----------cccEEEcccccCccCcCccccC----------------------------
Q 041155 315 SLQFLELSENNLTNSIYPY-----------NLVLLGLDSNLLRGSIPVAFKH---------------------------- 355 (471)
Q Consensus 315 ~L~~L~Ls~N~l~g~ip~~-----------~L~~L~Ls~n~l~g~ip~~l~~---------------------------- 355 (471)
+|+.|+++.|.+.+.+|.. .|+.|++++|.+++.+|..+..
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 6777888888777766542 2777888877777665544332
Q ss_pred ----------CCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcc
Q 041155 356 ----------MVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITG 425 (471)
Q Consensus 356 ----------l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g 425 (471)
.++|+.|++++|.+++..|..+..+++|+.|+|++|++++..|..+..++ +|++|+|++|++++
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD------NLQVLNLSYNLLGE 328 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS------SCCEEEEESCCCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC------CCCEEECCCCCCCc
Confidence 25788888888888877777888888888888888888877777777776 78888888888887
Q ss_pred cCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 426 SVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 426 ~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
..|. ++.+++|++|++++|++++..+..+..+++|++|+|++|.++
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 7776 888888888888888888777777888888888888888763
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=312.80 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=52.4
Q ss_pred cccEEECCCCcCCCccccc-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCc
Q 041155 315 SLQFLELSENNLTNSIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNIS 389 (471)
Q Consensus 315 ~L~~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls 389 (471)
+|+.|++++|.+++..|.. +|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 4555555555554433322 45555555555555555555555555555555555554445555555555555555
Q ss_pred CCcCcccCcHHhhhccCCCCcCCccEEEcccCcCc
Q 041155 390 DNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEIT 424 (471)
Q Consensus 390 ~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~ 424 (471)
+|++++..+..+..++ +|++|++++|.++
T Consensus 347 ~N~i~~~~~~~~~~l~------~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLE------KLQTLDLRDNALT 375 (844)
T ss_dssp SCCCCCCCSSCSCSCC------CCCEEEEETCCSC
T ss_pred CCCCCccChhhhcCCC------CCCEEECCCCCCC
Confidence 5555544443344443 4444444444443
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-33 Score=302.37 Aligned_cols=296 Identities=22% Similarity=0.259 Sum_probs=173.1
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCcccc--CC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLG--NL 235 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~--~l 235 (471)
.++++|++++ |.+++..|..++++++|++|++++|.+++. .|..++++++|++|++++|.+++..|..+. .+
T Consensus 97 ~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 97 TNLTELHLMS-----NSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTCSEEECCS-----SCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred CCCCEEECCC-----CccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 4566666666 455544445666677777777777776664 566666677777777777766655554433 44
Q ss_pred CCCCEEEccCCCCCCCCChhhhcCC---------------------------CCCcEEEcCCccCCCCCchhhhhCCCC-
Q 041155 236 SALQHLDLSLNHLFSVGNLDWLSHL---------------------------SSLTYLDLGSNNLSRSTDWLQVVGNLP- 287 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~~l~~l---------------------------~~L~~L~Ls~n~l~~~~~~~~~l~~l~- 287 (471)
++|++|++++|.+..... ..+..+ ++|++|++++|.+.+.. +..+..++
T Consensus 171 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~--~~~~~~l~~ 247 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKW 247 (680)
T ss_dssp CEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC--TTTTGGGGG
T ss_pred ccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC--hhHhhccCc
Confidence 667777777666443321 112222 44555666666555542 22344443
Q ss_pred -CCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc-----cccEEEcccccCcc-----CcCc----c
Q 041155 288 -LLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY-----NLVLLGLDSNLLRG-----SIPV----A 352 (471)
Q Consensus 288 -~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l~g-----~ip~----~ 352 (471)
+|++|++++|.+++..|..++.+ ++|++|++++|.+++..|.. +|++|++++|...+ .+|. .
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWL---PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTC---TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred CCCCEEECCCCCcCccCcccccCc---ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 37777777777776666666666 67777777777776655542 67777777665544 2332 5
Q ss_pred ccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccC-cH-HhhhccCCCCcCCccEEEcccCcCcccCCC-
Q 041155 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHF-PE-LIQNLSSGCTKNSLEMLYLSSNEITGSVPD- 429 (471)
Q Consensus 353 l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~-~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~- 429 (471)
+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.. +. .+..+. ..+|+.|++++|++++..|.
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~----~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA----HSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT----TSCCCEEECTTSCCCEECTTT
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc----cCcCceEECCCCCCCeEChhh
Confidence 667777888888888888777777777777777777766543321 11 111110 01455555555555555554
Q ss_pred CCCCCCCCEEECcCCcccccCc-hhhhcCCCCCEEECcCCC
Q 041155 430 LGGFSSLKELYLENNRLNGFTN-NSIGQMSKLRTLSLNGNS 469 (471)
Q Consensus 430 ~~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~ 469 (471)
++.+++|++|++++|++++.+| ..+..+++|++|++++|+
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 5555555555555555555444 345555555555555554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-33 Score=295.39 Aligned_cols=291 Identities=25% Similarity=0.280 Sum_probs=245.9
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
+++++|++++ |.+++..|..+.++++|++|++++|.+++. .|..++++++|++|+|++|.++ .+|.. .+++
T Consensus 52 ~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQ-----NSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCS-----SCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTT
T ss_pred CCcCEEECCC-----CCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--cccc
Confidence 3588999998 688877778999999999999999999975 6888999999999999999998 78877 8999
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCC--CEEEecCCCC--CCCCcccccCCC--
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLL--TTLYLYRCHL--PPIVPLSLSNLN-- 311 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L--~~L~l~~n~l--~g~~p~~l~~l~-- 311 (471)
|++|++++|++...+.+..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 999999999987666556799999999999999999874 23344445 9999999999 777776665541
Q ss_pred ----------------------------------------------------------------------------CCCc
Q 041155 312 ----------------------------------------------------------------------------YSTS 315 (471)
Q Consensus 312 ----------------------------------------------------------------------------~~~~ 315 (471)
..++
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 0016
Q ss_pred ccEEECCCCcCCCcccc-------------------------------------------------------c---cccE
Q 041155 316 LQFLELSENNLTNSIYP-------------------------------------------------------Y---NLVL 337 (471)
Q Consensus 316 L~~L~Ls~N~l~g~ip~-------------------------------------------------------~---~L~~ 337 (471)
|++|++++|.++|.+|. . +|++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 77888888888775543 1 6889
Q ss_pred EEcccccCccCcCccccCCCCCCEEeCcCCcCcc--cCChhccCCCCCCEEeCcCCcCcccCcHH-hhhccCCCCcCCcc
Q 041155 338 LGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEG--GVPDFFANMCSLTMLNISDNKLRGHFPEL-IQNLSSGCTKNSLE 414 (471)
Q Consensus 338 L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~~~~~~~L~ 414 (471)
|++++|.+++.+|..++.+++|++|++++|++++ .+|..++.+++|++|++++|++++.+|.. +..++ +|+
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~------~L~ 431 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE------SIL 431 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT------TCC
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc------cCC
Confidence 9999999999999999999999999999999996 45677899999999999999999867764 44555 899
Q ss_pred EEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 415 MLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 415 ~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+|++++|++++.+|. +. ++|++|++++|+++ .+|..+..+++|++|+|++|+++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 999999999998887 54 78999999999998 68888889999999999999875
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-32 Score=296.78 Aligned_cols=294 Identities=24% Similarity=0.278 Sum_probs=212.7
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
+++++|++++ |.+++..+..+.++++|++|++++|.+++. .|..++++++|++|+|++|.+++..+..|+++++
T Consensus 25 ~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTH-----NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCS-----SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCC-----CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 5678888887 567766666778888888888888888775 6777778888888888888877433335778888
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCccccc--CCCCCCc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLS--NLNYSTS 315 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~--~l~~~~~ 315 (471)
|++|++++|.+...+. ..++++++|++|++++|.+++.+ +..++++++|++|++++|.+++..+..++ .+ ++
T Consensus 99 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---~~ 172 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFAN---SS 172 (680)
T ss_dssp CSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT---CE
T ss_pred CCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhcccc---cc
Confidence 8888888887654432 34777888888888888877763 24567778888888888888776665543 33 67
Q ss_pred ccEEECCCCcCCCcccc--------------------------------ccccEEEcccccCccCcCccccCCCC--CCE
Q 041155 316 LQFLELSENNLTNSIYP--------------------------------YNLVLLGLDSNLLRGSIPVAFKHMVS--LSF 361 (471)
Q Consensus 316 L~~L~Ls~N~l~g~ip~--------------------------------~~L~~L~Ls~n~l~g~ip~~l~~l~~--L~~ 361 (471)
|+.|++++|.+++..|. .+++.|++++|.+++..|..+..++. |++
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 78888888777765543 14677788888888777777777654 888
Q ss_pred EeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc-----CC-----CCC
Q 041155 362 LGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS-----VP-----DLG 431 (471)
Q Consensus 362 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~-----ip-----~~~ 431 (471)
|++++|++++..|..++.+++|++|++++|++++..|..+..++ +|++|++++|...+. +| .++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF------NVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT------TCCEEECTTCBCCC------CCEECTTTTT
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCC------CccEEeccchhhhcccccccccccChhhcc
Confidence 88888888877777788888888888888888877777777766 677777776655442 22 255
Q ss_pred CCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCC
Q 041155 432 GFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNS 469 (471)
Q Consensus 432 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 469 (471)
.+++|++|++++|++++..|..+..+++|++|++++|.
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 66777777777777777666667777777777776664
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.6e-33 Score=284.77 Aligned_cols=282 Identities=24% Similarity=0.224 Sum_probs=251.3
Q ss_pred CcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCC
Q 041155 174 PLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGN 253 (471)
Q Consensus 174 ~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~ 253 (471)
.++ .+|..+. +++++|+|++|.+++. .|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+...+.
T Consensus 22 ~l~-~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 22 RFV-AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCS-SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CcC-cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 444 4666443 5899999999999975 67899999999999999999998889999999999999999999765542
Q ss_pred hhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc
Q 041155 254 LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY 333 (471)
Q Consensus 254 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~ 333 (471)
..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..+..
T Consensus 98 -~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 98 -GVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGL---NSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp -TSSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTC---TTCCEEEEESCCCSSCCHHH
T ss_pred -ccccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCC---CCCCEEECCCCcCcccChhH
Confidence 34788999999999999998873 3578999999999999999999888888888 99999999999998755432
Q ss_pred -----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCC
Q 041155 334 -----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGC 408 (471)
Q Consensus 334 -----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~ 408 (471)
+|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..++
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--- 248 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV--- 248 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT---
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc---
Confidence 899999999999988888999999999999999999999998887788999999999999955446778777
Q ss_pred CcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 409 TKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 409 ~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+|++|+|++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|+|++|+++
T Consensus 249 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 249 ---YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp ---TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ---ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 899999999999988887 999999999999999999999999999999999999999874
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.1e-34 Score=282.69 Aligned_cols=225 Identities=17% Similarity=0.218 Sum_probs=179.2
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
+++.|++++ |.++ .+|+.++++++|++|++++|.++ . +|..++++++|++|+|++|.++ .+|..++++++|
T Consensus 82 ~l~~L~L~~-----n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 82 GRVALELRS-----VPLP-QFPDQAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp TCCEEEEES-----SCCS-SCCSCGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred ceeEEEccC-----CCch-hcChhhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 477788887 5665 77888888888888888888888 3 8888888888888888888888 788888888888
Q ss_pred CEEEccCCCCCCCCChh--------hhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCC
Q 041155 239 QHLDLSLNHLFSVGNLD--------WLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNL 310 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~--------~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l 310 (471)
++|++++|+.....+.. .+.++++|++|++++|.++.. |..++++++|++|++++|.+++ +|..++.+
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l 228 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL---PASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC---CGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc---hHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence 88888887643322111 134589999999999999854 4578899999999999999997 56678887
Q ss_pred CCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcC
Q 041155 311 NYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISD 390 (471)
Q Consensus 311 ~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 390 (471)
++|++|++++|.+.+ .+|..++.+++|++|++++|++.+.+|..++.+++|++|++++
T Consensus 229 ---~~L~~L~Ls~n~~~~-------------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 229 ---PKLEELDLRGCTALR-------------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp ---TTCCEEECTTCTTCC-------------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred ---CCCCEEECcCCcchh-------------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 888888888777664 5666777888888888888888888888888888888888888
Q ss_pred CcCcccCcHHhhhccCCCCcCCccEEEcccCcCc
Q 041155 391 NKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEIT 424 (471)
Q Consensus 391 N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~ 424 (471)
|++.+.+|..+++++ +|+.+++..+.+.
T Consensus 287 n~~~~~iP~~l~~L~------~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLP------ANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCCCCGGGGGSC------TTCEEECCGGGSC
T ss_pred CCchhhccHHHhhcc------CceEEeCCHHHHH
Confidence 888888888888887 7888888776554
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=291.89 Aligned_cols=294 Identities=24% Similarity=0.354 Sum_probs=201.2
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccC-CCCccccCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEG-PIPSHLGNL 235 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g-~ip~~l~~l 235 (471)
..++++|++++ |.+++..|..|.++++|++|++++|.+++. .+..++++++|++|++++|.+++ .+|..++++
T Consensus 75 l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l 148 (570)
T 2z63_A 75 LSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (570)
T ss_dssp CTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTSCCCCS-TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred chhCCEEeCcC-----CcCCccCHhhhcCccccccccccccccccC-CCccccccccccEEecCCCccceecChhhhccc
Confidence 46788999988 677777778889999999999999998863 33468899999999999999886 578999999
Q ss_pred CCCCEEEccCCCCCCCCChhhhcC--------------------------------------------------------
Q 041155 236 SALQHLDLSLNHLFSVGNLDWLSH-------------------------------------------------------- 259 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~~l~~-------------------------------------------------------- 259 (471)
++|++|++++|.+..... ..++.
T Consensus 149 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l 227 (570)
T 2z63_A 149 TNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227 (570)
T ss_dssp TTCCEEECTTSCCCEECG-GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTC
T ss_pred CCCCEEeCcCCccceecH-HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCcccc
Confidence 999999999987543211 11222
Q ss_pred -----------------------------------------------------CCCCcEEEcCCccCCCCCchhhhhCCC
Q 041155 260 -----------------------------------------------------LSSLTYLDLGSNNLSRSTDWLQVVGNL 286 (471)
Q Consensus 260 -----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~l~~l 286 (471)
+++|++|++++|.+.+.+. .+..+
T Consensus 228 ~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~---~~~~~ 304 (570)
T 2z63_A 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNF 304 (570)
T ss_dssp EEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB---CCSCC
T ss_pred ceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh---hhccC
Confidence 2334444444443333211 12222
Q ss_pred CCCCEEEecCCCCCCCCcc-cc-------------------cCCCCCCcccEEECCCCcCCCcc----------------
Q 041155 287 PLLTTLYLYRCHLPPIVPL-SL-------------------SNLNYSTSLQFLELSENNLTNSI---------------- 330 (471)
Q Consensus 287 ~~L~~L~l~~n~l~g~~p~-~l-------------------~~l~~~~~L~~L~Ls~N~l~g~i---------------- 330 (471)
+|++|++++|.+.. +|. .+ ..+ ++|++|++++|.+++..
T Consensus 305 -~L~~L~l~~n~~~~-l~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 305 -GWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp -CCSEEEEESCBCSS-CCBCBCSSCCEEEEESCBSCCBCCCCBC---TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred -CccEEeeccCcccc-cCcccccccCEEeCcCCccccccccccC---CCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 22223332222221 111 00 122 55666666666655432
Q ss_pred ----------ccc----cccEEEcccccCccCcC-ccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCc-
Q 041155 331 ----------YPY----NLVLLGLDSNLLRGSIP-VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR- 394 (471)
Q Consensus 331 ----------p~~----~L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~- 394 (471)
+.. +|++|++++|.+++..| ..+..+++|++|++++|++++.+|..+..+++|++|++++|.++
T Consensus 380 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence 111 56666666666665554 35667777777777777777777777777788888888888876
Q ss_pred ccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 395 GHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 395 g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+.+|..+..++ +|++|++++|++++.+|. ++.+++|++|++++|++++.+|..+..+++|+.|++++|+++
T Consensus 460 ~~~p~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 460 NFLPDIFTELR------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp GEECSCCTTCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccchhhhhccc------CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 56777777666 888888888888888787 888888899999888888888878888888999999888764
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=292.56 Aligned_cols=298 Identities=22% Similarity=0.235 Sum_probs=188.5
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS 236 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~ 236 (471)
.+++++|++++ |.+++..|..+.++++|++|++++|.+++. .|..++++++|++|++++|.+++..+..+++++
T Consensus 51 l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 51 FPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp CSSCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCCceEEECCC-----CcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccc
Confidence 35677777777 566665566677778888888888877764 556777778888888888877754444577788
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCC----CEEEecCCCCCCCCcc-------
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLL----TTLYLYRCHLPPIVPL------- 305 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L----~~L~l~~n~l~g~~p~------- 305 (471)
+|++|++++|.+.....+..++++++|++|++++|.+++.+ +..++.+++| +.|++++|.+++..|.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L 202 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC--GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec--HHHccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence 88888888877655444456777888888888888776542 1122222222 3333333333221111
Q ss_pred --------------------------------------------------------------------------cccCCC
Q 041155 306 --------------------------------------------------------------------------SLSNLN 311 (471)
Q Consensus 306 --------------------------------------------------------------------------~l~~l~ 311 (471)
.+..+
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l- 281 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL- 281 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc-
Confidence 11111
Q ss_pred CCCcccEEECCCCc-------------------------------------------CCCccccc---cccEEEcccccC
Q 041155 312 YSTSLQFLELSENN-------------------------------------------LTNSIYPY---NLVLLGLDSNLL 345 (471)
Q Consensus 312 ~~~~L~~L~Ls~N~-------------------------------------------l~g~ip~~---~L~~L~Ls~n~l 345 (471)
++|+.|++++|. +.+.++.. +|++|++++|.+
T Consensus 282 --~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 282 --TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359 (570)
T ss_dssp --TTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred --CcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence 233333333332 22222211 566777777766
Q ss_pred ccCc--CccccCCC-----------------------CCCEEeCcCCcCcccCC-hhccCCCCCCEEeCcCCcCcccCcH
Q 041155 346 RGSI--PVAFKHMV-----------------------SLSFLGLASNEFEGGVP-DFFANMCSLTMLNISDNKLRGHFPE 399 (471)
Q Consensus 346 ~g~i--p~~l~~l~-----------------------~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~ 399 (471)
++.. |..+..++ +|++|++++|++++..| ..+..+++|++|++++|.+.+.+|.
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 6432 34444444 45555555555544333 3455666666666666666666666
Q ss_pred HhhhccCCCCcCCccEEEcccCcCc-ccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 400 LIQNLSSGCTKNSLEMLYLSSNEIT-GSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 400 ~l~~l~~~~~~~~L~~L~L~~N~l~-g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
.+..++ +|++|++++|.++ +.+|. ++.+++|++|++++|++++.+|..+..+++|++|++++|+++
T Consensus 440 ~~~~l~------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 440 IFNGLS------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TTTTCT------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hhhcCC------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 666665 8888888888887 57777 888899999999999999888888888999999999998764
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-32 Score=272.38 Aligned_cols=268 Identities=24% Similarity=0.264 Sum_probs=158.6
Q ss_pred hhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCC
Q 041155 183 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSS 262 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~ 262 (471)
+..+++|++|++++|.+++. .|..++++++|++|++++|.+++..|..++++++|++|++++|.+...+. ..+.++++
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~ 142 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPK 142 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred hcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCC
Confidence 44555555555555555542 33455555555555555555554444555555555555555555443321 22345555
Q ss_pred CcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCC----------------CCCCcccEEECCCCcC
Q 041155 263 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNL----------------NYSTSLQFLELSENNL 326 (471)
Q Consensus 263 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l----------------~~~~~L~~L~Ls~N~l 326 (471)
|++|++++|.+.+.+ +..++.+++|++|++++|.+++.. +..+ ...++|+.|++++|.+
T Consensus 143 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 143 LTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp CCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCee
Confidence 555555555555442 234555555555555555555431 1222 0013455556665555
Q ss_pred CCccccc--cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhc
Q 041155 327 TNSIYPY--NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNL 404 (471)
Q Consensus 327 ~g~ip~~--~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l 404 (471)
+...... +|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+..+
T Consensus 218 ~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 218 NVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp CEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred eeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence 4332111 677777777777653 456777777777777777777667777777777777777777774 45444444
Q ss_pred cCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 405 SSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 405 ~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+ +|++|++++|++++ +|. ++.+++|++|++++|++++. | +..+++|+.|++++|++
T Consensus 295 ~------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 295 P------TLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp T------TCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred C------CCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCc
Confidence 4 67777777777773 443 66677777777777777654 2 56677777788877765
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-31 Score=263.42 Aligned_cols=285 Identities=20% Similarity=0.226 Sum_probs=240.0
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
+++.+++++ +.++ .+|..+. +.+++|++++|.+++. .+..++++++|++|++++|.+++..|..+.++++|
T Consensus 32 ~l~~l~~~~-----~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSD-----LGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTT-----SCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecC-----CCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 356677776 4444 4565443 6899999999999974 55689999999999999999998889999999999
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCC--CCcccccCCCCCCcc
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP--IVPLSLSNLNYSTSL 316 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g--~~p~~l~~l~~~~~L 316 (471)
++|++++|.+...+. .-.++|++|++++|.+.+.+ +..+.++++|++|++++|.+.. ..+..+..+ ++|
T Consensus 103 ~~L~Ls~n~l~~l~~----~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~~L 173 (330)
T 1xku_A 103 ERLYLSKNQLKELPE----KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM---KKL 173 (330)
T ss_dssp CEEECCSSCCSBCCS----SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC---TTC
T ss_pred CEEECCCCcCCccCh----hhcccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccCcChhhccCC---CCc
Confidence 999999999765542 22379999999999999874 4578999999999999999964 667788888 999
Q ss_pred cEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 317 QFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
++|++++|.++. +|.. +|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 174 ~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 174 SYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred CEEECCCCcccc-CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 999999999985 4442 899999999999998899999999999999999999988888899999999999999999
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCC------CCCCCEEECcCCcccc--cCchhhhcCCCCCEEE
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGG------FSSLKELYLENNRLNG--FTNNSIGQMSKLRTLS 464 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~------l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~ 464 (471)
+ .+|..+..++ +|++|++++|++++..+. +.. ...++.|++++|.+.. ..|..+..+.+++.++
T Consensus 253 ~-~lp~~l~~l~------~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 253 V-KVPGGLADHK------YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp S-SCCTTTTTCS------SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred c-cCChhhccCC------CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence 9 8888888887 899999999999976655 543 4789999999999864 5567888899999999
Q ss_pred CcCCC
Q 041155 465 LNGNS 469 (471)
Q Consensus 465 Ls~N~ 469 (471)
|++|+
T Consensus 326 L~~N~ 330 (330)
T 1xku_A 326 LGNYK 330 (330)
T ss_dssp C----
T ss_pred ecccC
Confidence 99985
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-32 Score=288.50 Aligned_cols=132 Identities=27% Similarity=0.366 Sum_probs=114.5
Q ss_pred cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCc-ccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCC
Q 041155 334 NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFE-GGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412 (471)
Q Consensus 334 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~ 412 (471)
+++.++++.|.+.+..|..+..++.++.|++++|++. +.+|..+..+++|++|+|++|++++.+|..+..++ +
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~------~ 519 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------S 519 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------T
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC------C
Confidence 4556677777777777777788888999999988754 45778889999999999999999998898888888 8
Q ss_pred ccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcC-CCCCEEECcCCCCC
Q 041155 413 LEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQM-SKLRTLSLNGNSLR 471 (471)
Q Consensus 413 L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~ 471 (471)
|++|+|++|++++..|. ++.+++|++|++++|++++.+|..+..+ ++|++|+|++|+|+
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999999988887 9999999999999999999999999888 68999999999874
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-32 Score=286.86 Aligned_cols=279 Identities=24% Similarity=0.267 Sum_probs=159.3
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
+|++|+|++ |.+++..|..++.+++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+..|+++++|
T Consensus 76 ~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 76 QVELLNLND-----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCcEEECCC-----CCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 344444444 344444344444444455555544444443 33344444445555554444442222223444445
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccE
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 318 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~ 318 (471)
++|++++|.+.... +..++.+++|++|++++|.+++.+ ++.+++|+.|++++|.+++. ... .+|+.
T Consensus 150 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~l-----~~~---~~L~~ 215 (597)
T 3oja_B 150 TTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTL-----AIP---IAVEE 215 (597)
T ss_dssp CEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSEE-----ECC---TTCSE
T ss_pred CEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCccccc-----cCC---chhhe
Confidence 55555444433222 122444444455555444444431 23344444444444444331 112 45666
Q ss_pred EECCCCcCCCccccc--cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCccc
Q 041155 319 LELSENNLTNSIYPY--NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGH 396 (471)
Q Consensus 319 L~Ls~N~l~g~ip~~--~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 396 (471)
|++++|.++...+.. +|+.|++++|.+++ +..++.+++|++|+|++|.+++.+|..++.+++|+.|+|++|.+++
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 292 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-
T ss_pred eeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-
Confidence 666666655332222 67777777777775 3567777788888888888877777777777888888888887775
Q ss_pred CcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 397 FPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 397 ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+|..+..++ +|++|+|++|.++ .+|. ++.+++|++|++++|.+++.. +..+++|+.|++++|++
T Consensus 293 l~~~~~~l~------~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 293 LNLYGQPIP------TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EECSSSCCT------TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred CCcccccCC------CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCC
Confidence 455555555 7888888888777 4554 777778888888888877542 55677788888888875
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.1e-32 Score=265.60 Aligned_cols=284 Identities=23% Similarity=0.240 Sum_probs=240.2
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
+++.+++++ +.++ .+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|.+++..|..++++++|
T Consensus 34 ~l~~l~~~~-----~~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSD-----LGLK-AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCS-----SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCC-----CCcc-ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 356677776 4554 6676553 6899999999999864 57789999999999999999998889999999999
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCC--CCcccccCCCCCCcc
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP--IVPLSLSNLNYSTSL 316 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g--~~p~~l~~l~~~~~L 316 (471)
++|++++|.+...+. .+. ++|++|++++|.+.+.+ +..+..+++|++|++++|.++. ..|..+..+ +|
T Consensus 105 ~~L~L~~n~l~~l~~--~~~--~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l----~L 174 (332)
T 2ft3_A 105 QKLYISKNHLVEIPP--NLP--SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL----KL 174 (332)
T ss_dssp CEEECCSSCCCSCCS--SCC--TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC----CC
T ss_pred CEEECCCCcCCccCc--ccc--ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC----cc
Confidence 999999999775552 222 89999999999999875 2468999999999999999963 566666554 79
Q ss_pred cEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 317 QFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
+.|++++|.+++ +|.. +|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 175 ~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred CEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 999999999987 4443 899999999999988888999999999999999999987788899999999999999999
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCC------CCCCCEEECcCCccc--ccCchhhhcCCCCCEEE
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGG------FSSLKELYLENNRLN--GFTNNSIGQMSKLRTLS 464 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~------l~~L~~L~Ls~N~l~--g~ip~~l~~l~~L~~L~ 464 (471)
+ .+|..+..++ +|++|++++|++++..+. +.. ...|+.|++++|.+. +..|..+..+++|+.++
T Consensus 254 ~-~lp~~l~~l~------~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 254 S-RVPAGLPDLK------LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp C-BCCTTGGGCT------TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred e-ecChhhhcCc------cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 9 8998898888 899999999999976665 544 467999999999988 67788899999999999
Q ss_pred CcCCC
Q 041155 465 LNGNS 469 (471)
Q Consensus 465 Ls~N~ 469 (471)
+++|+
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 99985
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-32 Score=271.56 Aligned_cols=258 Identities=26% Similarity=0.242 Sum_probs=184.8
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCcc-CCCCCCCCeEeCCCCcccCCCCccccCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEF-IGSLTKLSYLDLSFAEFEGPIPSHLGNLS 236 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~-l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~ 236 (471)
.++++|++++ |.+++..|..+.++++|++|++++|.++. +|.. ++++++|++|++++|.+++..|..+.+++
T Consensus 93 ~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 165 (390)
T 3o6n_A 93 HTIQKLYMGF-----NAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165 (390)
T ss_dssp TTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT
T ss_pred CCcCEEECCC-----CCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCC
Confidence 4455555555 44554444555555666666666665553 3332 35555666666666655554455555556
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcc
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 316 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L 316 (471)
+|++|++++|.+...+ +..+++|++|++++|.+++. ...++|++|++++|.+... |.. .. ++|
T Consensus 166 ~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~-~~~--~~---~~L 228 (390)
T 3o6n_A 166 SLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVV-RGP--VN---VEL 228 (390)
T ss_dssp TCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEE-ECC--CC---SSC
T ss_pred CCCEEECCCCcCCccc----cccccccceeeccccccccc-------CCCCcceEEECCCCeeeec-ccc--cc---ccc
Confidence 6666666665544433 44555566666665555432 2234677777777777653 322 22 789
Q ss_pred cEEECCCCcCCCccccc----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCc
Q 041155 317 QFLELSENNLTNSIYPY----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNK 392 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 392 (471)
+.|++++|.+++. +.. +|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|+
T Consensus 229 ~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 229 TILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred cEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc
Confidence 9999999999975 322 89999999999999999999999999999999999995 67777889999999999999
Q ss_pred CcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccC
Q 041155 393 LRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFT 450 (471)
Q Consensus 393 l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~i 450 (471)
++ .+|..+..++ +|++|++++|+++.. | +..+++|++|++++|.+++.-
T Consensus 307 l~-~~~~~~~~l~------~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 307 LL-HVERNQPQFD------RLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CC-CCGGGHHHHT------TCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred ce-ecCccccccC------cCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 99 6788888888 899999999999854 3 778899999999999998753
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.5e-32 Score=286.27 Aligned_cols=266 Identities=23% Similarity=0.225 Sum_probs=136.0
Q ss_pred hhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCC
Q 041155 183 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSS 262 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~ 262 (471)
+.++++|++|++++|.+++. .|..++.+++|++|+|++|.+++..|..|+++++|++|++++|.+...+. ..++++++
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~ 148 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPK 148 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred HccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCC
Confidence 44555555555555555543 34455555555555555555555444445555555555555555443321 22345555
Q ss_pred CcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEccc
Q 041155 263 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDS 342 (471)
Q Consensus 263 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~ 342 (471)
|++|++++|.+++.+ +..++.+++|++|++++|.+++.. ++.+ ++|+.|++++|.+++...+.+|+.|++++
T Consensus 149 L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~---~~~l---~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 149 LTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVD---LSLI---PSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp CCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSCCSBCC---GGGC---TTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred CCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCCCCCcC---hhhh---hhhhhhhcccCccccccCCchhheeeccC
Confidence 555555555555442 234555555555555555555431 2233 45555555555555433333555555555
Q ss_pred ccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCc
Q 041155 343 NLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNE 422 (471)
Q Consensus 343 n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~ 422 (471)
|.++.. |..+ .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..++.++ +|++|+|++|.
T Consensus 221 n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~Ls~N~ 289 (597)
T 3oja_B 221 NSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ------RLERLYISNNR 289 (597)
T ss_dssp SCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS------SCCEEECTTSC
T ss_pred Cccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc------CCCEEECCCCC
Confidence 555422 2111 2345555555555554 24455555555555555555555555555554 55555555555
Q ss_pred CcccCCCCCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 423 ITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 423 l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+++..+.++.+++|++|+|++|.++ .+|..++.+++|++|+|++|++
T Consensus 290 l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 290 LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred CCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 5543222444555555555555555 3444555555555555555554
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.1e-31 Score=258.97 Aligned_cols=278 Identities=26% Similarity=0.435 Sum_probs=233.9
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCC
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS 236 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~ 236 (471)
.+++++|++++ |.+++ +|+ +..+++|++|++++|.++. +| .+.++++|++|++++|.+++ +|. +..++
T Consensus 65 ~~~L~~L~l~~-----n~i~~-~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~ 132 (347)
T 4fmz_A 65 LTNLEYLNLNG-----NQITD-ISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISD-ISP-LANLT 132 (347)
T ss_dssp CTTCCEEECCS-----SCCCC-CGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCT
T ss_pred cCCccEEEccC-----Ccccc-chh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccC-chh-hccCC
Confidence 35789999998 56653 444 8899999999999999984 44 58899999999999999984 555 88999
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcc
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 316 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L 316 (471)
+|++|++++|..... ...+..+++|++|++++|.+.+.+ .+..+++|++|++++|.+.+..+ +..+ ++|
T Consensus 133 ~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~--~~~l---~~L 201 (347)
T 4fmz_A 133 KMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQIEDISP--LASL---TSL 201 (347)
T ss_dssp TCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECTTSCCCCCGG--GGGC---TTC
T ss_pred ceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCch----hhccCCCCCEEEccCCccccccc--ccCC---Ccc
Confidence 999999999964333 244889999999999999988764 37789999999999999987544 6667 899
Q ss_pred cEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 317 QFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
+.+++++|.+++..+.. +|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|++
T Consensus 202 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCC
T ss_pred ceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCcc
Confidence 99999999998765432 89999999999986544 8899999999999999985 4 4688999999999999999
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
++ +| .+..++ +|++|++++|.+++..|. ++.+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 278 ~~-~~-~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SD-IS-VLNNLS------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CC-CG-GGGGCT------TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CC-Ch-hhcCCC------CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 96 43 467776 899999999999998888 8999999999999999998777 889999999999999985
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=6.9e-31 Score=269.09 Aligned_cols=271 Identities=23% Similarity=0.245 Sum_probs=171.0
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
+++++|++++ |.+++ +| ++.+++|++|++++|.+++ +| ++++++|++|++++|++++ +| ++++++
T Consensus 64 ~~L~~L~Ls~-----n~l~~-~~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~ 128 (457)
T 3bz5_A 64 TGLTKLICTS-----NNITT-LD--LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPL 128 (457)
T ss_dssp TTCSEEECCS-----SCCSC-CC--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTT
T ss_pred CCCCEEEccC-----CcCCe-Ec--cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCc
Confidence 4566666666 44444 23 5666667777777766664 33 5666667777777766664 43 666666
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|++|++++|++...+ ++++++|++|++++|...+.. .++.+++|++|++++|++++ +| ++.+ ++|+
T Consensus 129 L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~-l~--l~~l---~~L~ 194 (457)
T 3bz5_A 129 LTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITE-LD--VSQN---KLLN 194 (457)
T ss_dssp CCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCC-CC--CTTC---TTCC
T ss_pred CCEEECCCCccceec----cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccce-ec--cccC---CCCC
Confidence 777777766655543 566666666666666544432 35566677777777777666 33 4455 6677
Q ss_pred EEECCCCcCCCcccc--ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCC-------CCCEEeC
Q 041155 318 FLELSENNLTNSIYP--YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMC-------SLTMLNI 388 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~--~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-------~L~~L~L 388 (471)
.|++++|.+++.-.. .+|++|++++|++++ +| ++.+++|++|++++|++++..+..+..+. +|+.|++
T Consensus 195 ~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 195 RLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp EEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred EEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEEC
Confidence 777777776654111 166777777777765 55 66677777777777777764443333333 4455555
Q ss_pred cCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC---------CCCCCCCCEEECcCCcccccCchhhhcCCC
Q 041155 389 SDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD---------LGGFSSLKELYLENNRLNGFTNNSIGQMSK 459 (471)
Q Consensus 389 s~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~---------~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 459 (471)
++|.+.|.+| ++.++ +|+.|++++|.+.|.+|. ++.+++|++|++++|++++. + ++.+++
T Consensus 272 ~~n~~~~~~~--~~~l~------~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~ 340 (457)
T 3bz5_A 272 THNTQLIYFQ--AEGCR------KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTK 340 (457)
T ss_dssp TTCTTCCEEE--CTTCT------TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred CCCccCCccc--ccccc------cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCc
Confidence 5665555555 23333 777888888877666552 45567788888888888873 3 777888
Q ss_pred CCEEECcCCCCC
Q 041155 460 LRTLSLNGNSLR 471 (471)
Q Consensus 460 L~~L~Ls~N~l~ 471 (471)
|+.|++++|+++
T Consensus 341 L~~L~l~~N~l~ 352 (457)
T 3bz5_A 341 LKSLSCVNAHIQ 352 (457)
T ss_dssp CSEEECCSSCCC
T ss_pred CcEEECCCCCCC
Confidence 888888888764
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=2e-31 Score=272.84 Aligned_cols=246 Identities=28% Similarity=0.365 Sum_probs=135.7
Q ss_pred CCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEE
Q 041155 187 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYL 266 (471)
Q Consensus 187 ~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 266 (471)
++|++|++++|.+++ +| .++++++|++|++++|++++ +|..+ ++|++|++++|++...+ .++++++|++|
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~---~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP---ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC---CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc---cccCCCCCCEE
Confidence 456666666666553 44 35566666666666666553 44432 35666666666544432 25556666666
Q ss_pred EcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc--cccEEEccccc
Q 041155 267 DLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY--NLVLLGLDSNL 344 (471)
Q Consensus 267 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~--~L~~L~Ls~n~ 344 (471)
++++|.+++.+.. .++|++|++++|.++ .+| .++.+ ++|++|++++|++++ +|.. +|++|++++|+
T Consensus 201 ~l~~N~l~~l~~~------~~~L~~L~l~~n~l~-~lp-~~~~l---~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 201 YADNNSLKKLPDL------PLSLESIVAGNNILE-ELP-ELQNL---PFLTTIYADNNLLKT-LPDLPPSLEALNVRDNY 268 (454)
T ss_dssp ECCSSCCSSCCCC------CTTCCEEECCSSCCS-SCC-CCTTC---TTCCEEECCSSCCSS-CCSCCTTCCEEECCSSC
T ss_pred ECCCCcCCcCCCC------cCcccEEECcCCcCC-ccc-ccCCC---CCCCEEECCCCcCCc-ccccccccCEEECCCCc
Confidence 6666666554321 135555666655555 344 24444 566666666666654 2221 55555555555
Q ss_pred CccCcCccccCCCCCCEEeCcCCcCcc--cCChhc-------------cCC-CCCCEEeCcCCcCcccCcHHhhhccCCC
Q 041155 345 LRGSIPVAFKHMVSLSFLGLASNEFEG--GVPDFF-------------ANM-CSLTMLNISDNKLRGHFPELIQNLSSGC 408 (471)
Q Consensus 345 l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l-------------~~l-~~L~~L~Ls~N~l~g~ip~~l~~l~~~~ 408 (471)
+++ +|.. +++|++|++++|++++ .+|..+ ..+ ++|++|++++|++++ +|.. ++
T Consensus 269 l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~--- 337 (454)
T 1jl5_A 269 LTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PP--- 337 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CT---
T ss_pred ccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CC---
Confidence 553 3332 2445555555555544 222111 112 477788888888775 5543 23
Q ss_pred CcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccc--cCchhhhcC-------------CCCCEEECcCCCCC
Q 041155 409 TKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNG--FTNNSIGQM-------------SKLRTLSLNGNSLR 471 (471)
Q Consensus 409 ~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g--~ip~~l~~l-------------~~L~~L~Ls~N~l~ 471 (471)
+|++|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.+ ++|++|++++|+++
T Consensus 338 ---~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 338 ---RLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp ---TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred ---cCCEEECCCCccc-cccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 7889999999888 4666 57889999999999998 788888777 78999999999874
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.5e-30 Score=255.42 Aligned_cols=278 Identities=27% Similarity=0.396 Sum_probs=239.3
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
.++++|++++ +.+. .+| .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+++ +| .+.++++
T Consensus 44 ~~L~~L~l~~-----~~i~-~~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~ 111 (347)
T 4fmz_A 44 ESITKLVVAG-----EKVA-SIQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTN 111 (347)
T ss_dssp TTCSEEECCS-----SCCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTT
T ss_pred ccccEEEEeC-----Cccc-cch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCc
Confidence 5689999998 4554 344 38889999999999999985 555 8999999999999999984 54 6999999
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|++|++++|.+...+. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+ ++|+
T Consensus 112 L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~l---~~L~ 180 (347)
T 4fmz_A 112 LRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVTP--IANL---TDLY 180 (347)
T ss_dssp CSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCC---GGGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCS
T ss_pred CCEEECcCCcccCchh---hccCCceeEEECCCCCCcccc---cchhhCCCCcEEEecCCCcCCchh--hccC---CCCC
Confidence 9999999999766542 889999999999999766553 358999999999999999987655 6677 8999
Q ss_pred EEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCc
Q 041155 318 FLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR 394 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 394 (471)
.|++++|.+++..+.. +|+.+++++|.+++..+ +..+++|++|++++|++++ +|. +..+++|++|++++|.++
T Consensus 181 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred EEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccC
Confidence 9999999998754422 89999999999986655 8899999999999999996 444 889999999999999999
Q ss_pred ccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 395 GHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 395 g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+ + ..+..++ +|++|++++|++++. |.+..+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus 257 ~-~-~~~~~l~------~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 257 D-I-NAVKDLT------KLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp C-C-GGGTTCT------TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred C-C-hhHhcCC------CcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 6 4 3566666 899999999999864 66889999999999999999999999999999999999999874
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.4e-30 Score=266.76 Aligned_cols=278 Identities=23% Similarity=0.252 Sum_probs=234.1
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
+++++|++++ |.+++ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++ +| ++++++
T Consensus 42 ~~L~~L~Ls~-----n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~ 107 (457)
T 3bz5_A 42 ATLTSLDCHN-----SSITD-MT-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTK 107 (457)
T ss_dssp TTCCEEECCS-----SCCCC-CT-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred CCCCEEEccC-----CCccc-Ch-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCce-ee--cCCCCc
Confidence 5689999998 57775 45 68999999999999999996 45 8899999999999999996 44 899999
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|++|++++|++...+ ++++++|++|++++|.+++. .++.+++|++|++++|+..+.+ .++.+ ++|+
T Consensus 108 L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~--~~~~l---~~L~ 173 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKL--DVTPQ---TQLT 173 (457)
T ss_dssp CCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCC--CCTTC---TTCC
T ss_pred CCEEECCCCcCCeec----CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCCccccc--ccccC---CcCC
Confidence 999999999987654 88999999999999999986 3788999999999999877766 36666 9999
Q ss_pred EEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCc
Q 041155 318 FLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR 394 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 394 (471)
.|++++|++++ +|.. +|+.|++++|.+++. .++.+++|++|++++|++++ +| ++.+++|+.|++++|+++
T Consensus 174 ~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 174 TLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccce-eccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 99999999998 4432 899999999999975 38899999999999999997 77 889999999999999999
Q ss_pred ccCcHHhhhccCC-CCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCchh--------hhcCCCCCEEEC
Q 041155 395 GHFPELIQNLSSG-CTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNS--------IGQMSKLRTLSL 465 (471)
Q Consensus 395 g~ip~~l~~l~~~-~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip~~--------l~~l~~L~~L~L 465 (471)
+..+..+..+... ....+|+.|++++|.+.|.+| ++.+++|+.|++++|.+.|.+|.. +..+++|++|++
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 8654443333200 112256778888888888777 578899999999999998888753 566789999999
Q ss_pred cCCCCC
Q 041155 466 NGNSLR 471 (471)
Q Consensus 466 s~N~l~ 471 (471)
++|+|+
T Consensus 326 ~~N~l~ 331 (457)
T 3bz5_A 326 NNTELT 331 (457)
T ss_dssp TTCCCS
T ss_pred CCCccc
Confidence 999875
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.7e-30 Score=265.79 Aligned_cols=279 Identities=25% Similarity=0.396 Sum_probs=153.3
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
.++++|++++ |.+++. |+ +.++++|++|++++|.+++. +. ++++++|++|++++|.+++ +|. +.++++
T Consensus 68 ~~L~~L~Ls~-----n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~ 135 (466)
T 1o6v_A 68 NNLTQINFSN-----NQLTDI-TP-LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITD-IDP-LKNLTN 135 (466)
T ss_dssp TTCCEEECCS-----SCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTT
T ss_pred cCCCEEECCC-----CccCCc-hh-hhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCC
Confidence 3456666665 344432 22 55555555555555555542 22 5555555555555555553 222 455555
Q ss_pred CCEEEccCCCCCCCCC------------------hhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCC
Q 041155 238 LQHLDLSLNHLFSVGN------------------LDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHL 299 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~------------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l 299 (471)
|++|++++|.+...+. ...+.++++|++|++++|.+.+.+ .+..+++|++|++++|.+
T Consensus 136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATNNQI 211 (466)
T ss_dssp CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCC
T ss_pred CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh----hhccCCCCCEEEecCCcc
Confidence 5555555554322110 012445555555555555555432 244455555555555555
Q ss_pred CCCCc--------------------ccccCCCCCCcccEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCC
Q 041155 300 PPIVP--------------------LSLSNLNYSTSLQFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHM 356 (471)
Q Consensus 300 ~g~~p--------------------~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l 356 (471)
++..| ..+..+ ++|+.|++++|.+++..+.. +|++|++++|.+++..| +..+
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 212 SDITPLGILTNLDELSLNGNQLKDIGTLASL---TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGGGGGC---TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred cccccccccCCCCEEECCCCCcccchhhhcC---CCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCC
Confidence 44333 123333 45555555555555443321 55566666666554332 5556
Q ss_pred CCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCC
Q 041155 357 VSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSL 436 (471)
Q Consensus 357 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L 436 (471)
++|++|++++|++++..| +..+++|+.|++++|++++..| +..++ +|++|++++|++++. +.++.+++|
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~-~~l~~l~~L 355 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT------KLQRLFFYNNKVSDV-SSLANLTNI 355 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT------TCCEEECCSSCCCCC-GGGTTCTTC
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc------cCCEeECCCCccCCc-hhhccCCCC
Confidence 666666666666664322 5566666666666666665544 44454 677777777777654 446777777
Q ss_pred CEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 437 KELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 437 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
++|++++|++++.+| +..+++|+.|++++|++
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 777777777777666 67777777777777754
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.6e-31 Score=280.28 Aligned_cols=179 Identities=20% Similarity=0.153 Sum_probs=155.6
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
+++++|++++ |.+++..|..+.++++|++|++++|.+++. .|..++++++|++|++++|.+++..|..++++++
T Consensus 26 ~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSF-----NKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCS-----SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcC-----CccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 5789999998 688888888999999999999999999975 6788999999999999999999877777999999
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|++|++++|.+...+.+..++++++|++|++++|.+.+... +..++.+++|++|++++|.+++.+|..++.+ ++|+
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~ 175 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKSI---RDIH 175 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTC---SEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhhhcc---ccCc
Confidence 99999999997755444568999999999999998555421 3478999999999999999999999999988 9999
Q ss_pred EEECCCCcCCCcccc------ccccEEEcccccCcc
Q 041155 318 FLELSENNLTNSIYP------YNLVLLGLDSNLLRG 347 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~------~~L~~L~Ls~n~l~g 347 (471)
.|+++.|.+.. +|. .+|++|++++|++++
T Consensus 176 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 176 HLTLHLSESAF-LLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred eEecccCcccc-cchhhHhhcccccEEEccCCcccc
Confidence 99999998753 332 178999999998876
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.1e-32 Score=264.73 Aligned_cols=278 Identities=18% Similarity=0.213 Sum_probs=175.5
Q ss_pred cCCCHHHHHHHHHHHHhC-cCCCCCCCCCCC-CCCCCCCCCcceeeeCCCCCceEEEEeCCCCCCCCCcccccchhh--h
Q 041155 109 IRCIDEEREALLTFKESL-VDESGVLSSWGP-EDEKRDRCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPAL--L 184 (471)
Q Consensus 109 ~g~~p~~~~~l~~l~~~~-~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l--~ 184 (471)
.+.++.+..+|.+++..+ .++.+....|.. .....++|.|.|+.|.. ++..+ .
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~-----------------------~~~~l~~~ 78 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA-----------------------TADLLEDA 78 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHH-----------------------HHHHHHHH
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhh-----------------------hHHHHhcc
Confidence 456777888999998865 344344444520 01245678888877731 12222 2
Q ss_pred CCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCc
Q 041155 185 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLT 264 (471)
Q Consensus 185 ~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 264 (471)
..+++++|++++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|.+...+ ..++++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP--ASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC--GGGGGCTTCC
T ss_pred cccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc--HHHhcCcCCC
Confidence 4578999999999998 48999999999999999999999 99999999999999999999976443 4577788888
Q ss_pred EEEcCCccCCCCCchhhhhC---------CCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccc
Q 041155 265 YLDLGSNNLSRSTDWLQVVG---------NLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNL 335 (471)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~l~---------~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L 335 (471)
+|++++|++.+.. |..++ .+++|++|++++|+++ .+|..++++ ++|++|++++|.++
T Consensus 154 ~L~L~~n~~~~~~--p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l---~~L~~L~L~~N~l~-------- 219 (328)
T 4fcg_A 154 ELSIRACPELTEL--PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL---QNLKSLKIRNSPLS-------- 219 (328)
T ss_dssp EEEEEEETTCCCC--CSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC---TTCCEEEEESSCCC--------
T ss_pred EEECCCCCCcccc--ChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC---CCCCEEEccCCCCC--------
Confidence 8888887766652 22222 2555555555555554 344444444 44444444444333
Q ss_pred cEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccE
Q 041155 336 VLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEM 415 (471)
Q Consensus 336 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~ 415 (471)
.+|..++.+++|++|++++|++.+.+|..++.+++|++|++++|++.+.+|..+..++ +|++
T Consensus 220 ------------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~------~L~~ 281 (328)
T 4fcg_A 220 ------------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT------QLEK 281 (328)
T ss_dssp ------------CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT------TCCE
T ss_pred ------------cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC------CCCE
Confidence 2334455555555555555555555555555555555555555555555555555554 5555
Q ss_pred EEcccCcCcccCCC-CCCCCCCCEEECcCCcc
Q 041155 416 LYLSSNEITGSVPD-LGGFSSLKELYLENNRL 446 (471)
Q Consensus 416 L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l 446 (471)
|++++|++.+.+|. ++++++|+.+++..+.+
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 55555555555555 55555555555554433
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3.7e-30 Score=264.75 Aligned_cols=257 Identities=27% Similarity=0.353 Sum_probs=199.1
Q ss_pred CCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCc--------------------cCCCCCCCCe
Q 041155 157 TGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPE--------------------FIGSLTKLSY 216 (471)
Q Consensus 157 ~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~--------------------~l~~l~~L~~ 216 (471)
.+++++|++++ |.+++. |+ +.++++|++|++++|.+++ +|. .++++++|++
T Consensus 111 l~~L~~L~L~~-----n~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 111 LTNLTGLTLFN-----NQITDI-DP-LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 181 (466)
T ss_dssp CTTCCEEECCS-----SCCCCC-GG-GTTCTTCSEEEEEEEEECC--CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE
T ss_pred CCCCCEEECCC-----CCCCCC-hH-HcCCCCCCEEECCCCccCC--ChhhccCCcccEeecCCcccCchhhccCCCCCE
Confidence 45677777776 455432 32 6677777777777776654 221 2445566666
Q ss_pred EeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecC
Q 041155 217 LDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYR 296 (471)
Q Consensus 217 L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~ 296 (471)
|++++|.+++ ++ .+.++++|++|++++|.+..... ++.+++|++|++++|.+.+.+ .+..+++|++|++++
T Consensus 182 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 182 LDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLAN 252 (466)
T ss_dssp EECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCS
T ss_pred EECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch----hhhcCCCCCEEECCC
Confidence 6666666653 22 36667777777777776544332 666778888888888777652 567889999999999
Q ss_pred CCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccC
Q 041155 297 CHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGV 373 (471)
Q Consensus 297 n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 373 (471)
|.+++..| +..+ ++|+.|++++|.+++..+.. +|+.|++++|++++..| ++.+++|++|++++|++++..
T Consensus 253 n~l~~~~~--~~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 253 NQISNLAP--LSGL---TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp SCCCCCGG--GTTC---TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred Cccccchh--hhcC---CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 99998665 6667 99999999999999865532 89999999999997655 889999999999999999866
Q ss_pred ChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCccccc
Q 041155 374 PDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGF 449 (471)
Q Consensus 374 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ 449 (471)
| +..+++|+.|++++|++++. ..+..++ +|++|++++|++++.+| +..+++|+.|++++|.+++.
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDV--SSLANLT------NINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC--GGGTTCT------TCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred h--hccCccCCEeECCCCccCCc--hhhccCC------CCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence 6 78899999999999999975 3567776 89999999999999887 89999999999999999983
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.8e-30 Score=251.49 Aligned_cols=282 Identities=21% Similarity=0.232 Sum_probs=231.7
Q ss_pred CCcceeeeCC---------CCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCe
Q 041155 146 CKWAGVGCSN---------RTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSY 216 (471)
Q Consensus 146 ~~~~g~~~~~---------~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~ 216 (471)
|.|..+.|.. ..++++.|++++ |.+++..|..+.++++|++|++++|.+++. .|..++++++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQN-----NDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCE
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCC-----CcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCE
Confidence 5566666542 235789999998 678877777899999999999999999975 7889999999999
Q ss_pred EeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecC
Q 041155 217 LDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYR 296 (471)
Q Consensus 217 L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~ 296 (471)
|++++|.++ .+|..+. ++|++|++++|.+...+. ..+.++++|++|++++|.+......+..+..+ +|++|++++
T Consensus 107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 999999998 7888776 899999999999765542 45889999999999999997431124567777 999999999
Q ss_pred CCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc-----cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcc
Q 041155 297 CHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEG 371 (471)
Q Consensus 297 n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 371 (471)
|++++ +|..+. ++|++|++++|.+++..+.. +|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 182 n~l~~-l~~~~~-----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 182 AKLTG-IPKDLP-----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp SBCSS-CCSSSC-----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCCCc-cCcccc-----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 99987 565432 68999999999999876543 8999999999999888889999999999999999999
Q ss_pred cCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCc--ccCCC-CCCCCCCCEEECcCCc
Q 041155 372 GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEIT--GSVPD-LGGFSSLKELYLENNR 445 (471)
Q Consensus 372 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~--g~ip~-~~~l~~L~~L~Ls~N~ 445 (471)
.+|..+..+++|++|++++|++++..+..+...........|+.|++++|.+. +..|. +..+++|+.+++++|+
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 79999999999999999999999766665554322122347999999999987 45555 8899999999999985
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1e-28 Score=242.33 Aligned_cols=261 Identities=20% Similarity=0.242 Sum_probs=225.6
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEE
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLD 267 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~ 267 (471)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.... +..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEE
Confidence 6899999999998 4787664 68999999999999766678999999999999999976543 24588999999999
Q ss_pred cCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCC--ccccc-----cccEEEc
Q 041155 268 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTN--SIYPY-----NLVLLGL 340 (471)
Q Consensus 268 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g--~ip~~-----~L~~L~L 340 (471)
+++|.++..+. .+. ++|++|++++|.+++..+..+.++ ++|+.|++++|.++. ..+.. +|++|++
T Consensus 107 Ls~n~l~~l~~---~~~--~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 107 LSKNQLKELPE---KMP--KTLQELRVHENEITKVRKSVFNGL---NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCSSCCSBCCS---SCC--TTCCEEECCSSCCCBBCHHHHTTC---TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCCCcCCccCh---hhc--ccccEEECCCCcccccCHhHhcCC---ccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 99999986642 333 799999999999999888888888 999999999999964 33332 8999999
Q ss_pred ccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEccc
Q 041155 341 DSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSS 420 (471)
Q Consensus 341 s~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~ 420 (471)
++|.++ .+|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..++ +|++|++++
T Consensus 179 ~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~ 249 (330)
T 1xku_A 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP------HLRELHLNN 249 (330)
T ss_dssp CSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST------TCCEEECCS
T ss_pred CCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC------CCCEEECCC
Confidence 999998 4776554 8999999999999988899999999999999999999988887888887 899999999
Q ss_pred CcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhc------CCCCCEEECcCCCCC
Q 041155 421 NEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQ------MSKLRTLSLNGNSLR 471 (471)
Q Consensus 421 N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l~ 471 (471)
|+++ .+|. +..+++|++|++++|++++..+..+.. .+.++.+++++|++.
T Consensus 250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 9999 6777 999999999999999999877766643 478999999999863
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=5.1e-30 Score=262.39 Aligned_cols=247 Identities=23% Similarity=0.301 Sum_probs=122.1
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCC-------------CeEeCCCCcc
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKL-------------SYLDLSFAEF 224 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L-------------~~L~Ls~n~l 224 (471)
.++++|++++ |.+ |++|++++++++|++|++++|.++|. +|..++++++| ++|++++|.+
T Consensus 11 ~~L~~L~l~~-----n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 11 TFLQEPLRHS-----SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccchhhhccc-----Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 3466666666 455 66777777777777777777776665 66666666543 6666666666
Q ss_pred cCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc
Q 041155 225 EGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP 304 (471)
Q Consensus 225 ~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p 304 (471)
++ +|.. .++|++|++++|.+...+. .+++|++|++++|.+++.+.+ .++|++|++++|++++ +|
T Consensus 84 ~~-lp~~---~~~L~~L~l~~n~l~~lp~-----~~~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 84 SS-LPEL---PPHLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp SC-CCSC---CTTCSEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSS-CC
T ss_pred cc-CCCC---cCCCCEEEccCCcCCcccc-----ccCCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCC-Cc
Confidence 63 4432 2456666666666544331 125566666666666554321 1456666666666655 44
Q ss_pred ccccCCCCCCcccEEECCCCcCCCccccc--cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcc-----------
Q 041155 305 LSLSNLNYSTSLQFLELSENNLTNSIYPY--NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEG----------- 371 (471)
Q Consensus 305 ~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~--~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g----------- 371 (471)
.++++ ++|++|++++|++++ +|.. +|++|++++|++++ +| .++.+++|++|++++|++++
T Consensus 148 -~~~~l---~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L 220 (454)
T 1jl5_A 148 -ELQNS---SFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220 (454)
T ss_dssp -CCTTC---TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -ccCCC---CCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEE
Confidence 35555 566666666666654 3332 56666666666654 44 35555555555555555553
Q ss_pred --------cCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcC
Q 041155 372 --------GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLEN 443 (471)
Q Consensus 372 --------~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~ 443 (471)
.+|. ++.+++|++|++++|++++ +|.. .+ +|++|++++|++++ +|.. +++|++|++++
T Consensus 221 ~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~------~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~ 286 (454)
T 1jl5_A 221 VAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PP------SLEALNVRDNYLTD-LPEL--PQSLTFLDVSE 286 (454)
T ss_dssp ECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CT------TCCEEECCSSCCSC-CCCC--CTTCCEEECCS
T ss_pred ECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---cc------ccCEEECCCCcccc-cCcc--cCcCCEEECcC
Confidence 3342 4444445555555554442 3321 11 45555555555554 3331 25566666666
Q ss_pred Ccccc
Q 041155 444 NRLNG 448 (471)
Q Consensus 444 N~l~g 448 (471)
|++++
T Consensus 287 N~l~~ 291 (454)
T 1jl5_A 287 NIFSG 291 (454)
T ss_dssp SCCSE
T ss_pred CccCc
Confidence 66665
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.7e-28 Score=261.08 Aligned_cols=302 Identities=23% Similarity=0.236 Sum_probs=221.8
Q ss_pred CCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCC
Q 041155 156 RTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNL 235 (471)
Q Consensus 156 ~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l 235 (471)
....+++|||++ |.+++..|..|.++++|++|+|++|.+++. .|..|.++++|++|+|++|++++..|..|.++
T Consensus 50 lp~~~~~LdLs~-----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 50 LPFSTKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCcCCCEEEeeC-----CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 345789999999 788876667899999999999999999964 56689999999999999999996556678999
Q ss_pred CCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCC---
Q 041155 236 SALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNY--- 312 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~--- 312 (471)
++|++|++++|++...+. ..++++++|++|++++|.+.+.. .+..++.+++|++|++++|++++..|..+..+..
T Consensus 124 ~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 999999999999766543 34889999999999999998763 2567889999999999999987755543321100
Q ss_pred --------------------------------------------------------------------------------
Q 041155 313 -------------------------------------------------------------------------------- 312 (471)
Q Consensus 313 -------------------------------------------------------------------------------- 312 (471)
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence
Q ss_pred ---------------------------------------------CCcccEEECCCCcCCCcccc---------------
Q 041155 313 ---------------------------------------------STSLQFLELSENNLTNSIYP--------------- 332 (471)
Q Consensus 313 ---------------------------------------------~~~L~~L~Ls~N~l~g~ip~--------------- 332 (471)
...++.|++.+|.+.+..+.
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 01122222222222111000
Q ss_pred ---------ccccEEEcccccCcc-------------------------------------------------CcC-ccc
Q 041155 333 ---------YNLVLLGLDSNLLRG-------------------------------------------------SIP-VAF 353 (471)
Q Consensus 333 ---------~~L~~L~Ls~n~l~g-------------------------------------------------~ip-~~l 353 (471)
.+++.++++.|.+.. ..+ ..+
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence 023334444333321 011 123
Q ss_pred cCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCc-ccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CC
Q 041155 354 KHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLR-GHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LG 431 (471)
Q Consensus 354 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~ 431 (471)
..+.+++.++++.|.+.+..|..+..++.|+.|++++|++. +.+|..+..++ +|++|+|++|++++.+|. ++
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------ccCEEECCCCccCCcChHHHc
Confidence 34445555556666666556666666777777777777644 34556666666 899999999999999998 99
Q ss_pred CCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 432 GFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 432 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
.+++|++|+|++|++++..|..+..+++|++|+|++|+|+
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 9999999999999999999999999999999999999875
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.8e-30 Score=247.21 Aligned_cols=238 Identities=27% Similarity=0.338 Sum_probs=169.0
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCCCcCc-cCCCCCCCCeEeCCCCccc--CCCCccccCCCCCCEEEccCCCCCCCCCh
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGSPIPE-FIGSLTKLSYLDLSFAEFE--GPIPSHLGNLSALQHLDLSLNHLFSVGNL 254 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~-~l~~l~~L~~L~Ls~n~l~--g~ip~~l~~l~~L~~L~L~~n~~~~~~~~ 254 (471)
.+|..+ .++|++|++++|.++. +|. .+.++++|++|++++|.++ +.+|..+..+++|++|++++|.+...+
T Consensus 21 ~ip~~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~-- 94 (306)
T 2z66_A 21 SVPTGI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-- 94 (306)
T ss_dssp SCCSCC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE--
T ss_pred cCCCCC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh--
Confidence 455533 2588999999999884 554 4788999999999999887 334677778899999999999865433
Q ss_pred hhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcccccc
Q 041155 255 DWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYN 334 (471)
Q Consensus 255 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~ 334 (471)
..+..+++|++|++++|.+.+.+. ...+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+++.
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~----- 165 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQEN----- 165 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTC---TTCCEEECTTCEEGGG-----
T ss_pred hhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccC---cCCCEEECCCCccccc-----
Confidence 347788899999999998887642 2467888899999999998888878777777 7888888888776641
Q ss_pred ccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCcc
Q 041155 335 LVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLE 414 (471)
Q Consensus 335 L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~ 414 (471)
.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..++ +|+
T Consensus 166 -------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~ 226 (306)
T 2z66_A 166 -------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN------SLQ 226 (306)
T ss_dssp -------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT------TCC
T ss_pred -------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc------cCC
Confidence 2445556666666666666666665566666666666666666666655454555554 666
Q ss_pred EEEcccCcCcccCCC-CCCC-CCCCEEECcCCccccc
Q 041155 415 MLYLSSNEITGSVPD-LGGF-SSLKELYLENNRLNGF 449 (471)
Q Consensus 415 ~L~L~~N~l~g~ip~-~~~l-~~L~~L~Ls~N~l~g~ 449 (471)
+|++++|++++.+|. +..+ ++|++|++++|.+++.
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 666666666666665 5555 3666666666666654
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=246.19 Aligned_cols=262 Identities=23% Similarity=0.252 Sum_probs=203.5
Q ss_pred CCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCC
Q 041155 173 FPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVG 252 (471)
Q Consensus 173 n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~ 252 (471)
+.++ .+|..+. ++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|++|++++|++...+
T Consensus 41 ~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 41 GSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp TTCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCcc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 4555 5676554 5899999999999863 4447889999999999999998777788999999999999999876544
Q ss_pred ChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCC-CCCCCcccccCCCCCCcccEEECCCCcCCCccc
Q 041155 253 NLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH-LPPIVPLSLSNLNYSTSLQFLELSENNLTNSIY 331 (471)
Q Consensus 253 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~-l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip 331 (471)
...++++++|++|++++|.+.+.+. ...+..+++|++|++++|+ +.+..|..++.+ ++|++|++++|.+++..|
T Consensus 117 -~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 117 -SSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL---TFLEELEIDASDLQSYEP 191 (353)
T ss_dssp -HHHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTC---CEEEEEEEEETTCCEECT
T ss_pred -HhHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCC---CCCCEEECCCCCcCccCH
Confidence 2447889999999999999887642 1367889999999999984 666556777777 889999999998887766
Q ss_pred cc-----cccEEEcccccCccCcCc-cccCCCCCCEEeCcCCcCcccCChhc---cCCCCCCEEeCcCCcCcc----cCc
Q 041155 332 PY-----NLVLLGLDSNLLRGSIPV-AFKHMVSLSFLGLASNEFEGGVPDFF---ANMCSLTMLNISDNKLRG----HFP 398 (471)
Q Consensus 332 ~~-----~L~~L~Ls~n~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~l~~L~~L~Ls~N~l~g----~ip 398 (471)
.. +|++|++++|.++ .+|. .+..+++|++|++++|++++..+..+ .....++.++++++.+++ .+|
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 53 7888888888875 4444 34567888999999998887554433 235678888888888876 467
Q ss_pred HHhhhccCCCCcCCccEEEcccCcCcccCCC--CCCCCCCCEEECcCCcccccCc
Q 041155 399 ELIQNLSSGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 399 ~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~--~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
..+..++ +|++|++++|+++ .+|. ++.+++|++|++++|.+++..|
T Consensus 271 ~~l~~l~------~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 271 KLLNQIS------GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHTCT------TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhccc------CCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7777777 8999999999888 4555 5888899999999998888765
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-28 Score=238.47 Aligned_cols=246 Identities=24% Similarity=0.308 Sum_probs=199.9
Q ss_pred CEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCcc-ccCCCCCCEEEccCCCCCCCCC-hhhhcCCCCCcEEE
Q 041155 190 TYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSH-LGNLSALQHLDLSLNHLFSVGN-LDWLSHLSSLTYLD 267 (471)
Q Consensus 190 ~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~-l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~L~ 267 (471)
+.++.+++.++ .+|..+. ++|++|++++|.++ .+|.. +.++++|++|++++|.+...+. +..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcc--cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 46788888887 4776554 68999999999998 56654 6889999999999988653321 13355678888888
Q ss_pred cCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc-ccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCc
Q 041155 268 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLR 346 (471)
Q Consensus 268 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p-~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~ 346 (471)
+++|.+...+ ..+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.++
T Consensus 85 Ls~n~i~~l~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~------------------- 139 (306)
T 2z66_A 85 LSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL---RNLIYLDISHTHTR------------------- 139 (306)
T ss_dssp CCSCSEEEEE---EEEETCTTCCEEECTTSEEESSTTTTTTTTC---TTCCEEECTTSCCE-------------------
T ss_pred CCCCccccCh---hhcCCCCCCCEEECCCCcccccccchhhhhc---cCCCEEECCCCcCC-------------------
Confidence 8888877543 357778888888888888776544 455555 66666666666544
Q ss_pred cCcCccccCCCCCCEEeCcCCcCcc-cCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcc
Q 041155 347 GSIPVAFKHMVSLSFLGLASNEFEG-GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITG 425 (471)
Q Consensus 347 g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g 425 (471)
+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..++ +|++|++++|++++
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------SLQVLNMSHNNFFS 213 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTTSCCSB
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC------CCCEEECCCCccCc
Confidence 4666778899999999999999997 6899999999999999999999988888888887 89999999999998
Q ss_pred cCCC-CCCCCCCCEEECcCCcccccCchhhhcCC-CCCEEECcCCCCC
Q 041155 426 SVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMS-KLRTLSLNGNSLR 471 (471)
Q Consensus 426 ~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~ 471 (471)
..+. +..+++|++|++++|++++.+|..+..++ +|++|+|++|+++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 7776 89999999999999999999999999985 9999999999863
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=243.60 Aligned_cols=272 Identities=24% Similarity=0.212 Sum_probs=222.0
Q ss_pred CCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCc
Q 041155 185 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLT 264 (471)
Q Consensus 185 ~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 264 (471)
.++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.... +..+.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCC
Confidence 4455567899999998 4788765 59999999999999655558999999999999999976543 24588999999
Q ss_pred EEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc-ccccCCCCCCcccEEECCCCcCCCccc-cc-----cccE
Q 041155 265 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLTNSIY-PY-----NLVL 337 (471)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p-~~l~~l~~~~~L~~L~Ls~N~l~g~ip-~~-----~L~~ 337 (471)
+|++++|.+++.+ +..++.+++|++|++++|++++..+ ..+..+ ++|++|++++|...+.++ .. +|++
T Consensus 104 ~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 104 HLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL---TKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp EEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC---TTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred EEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCchhhhccC---CCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 9999999999875 3458999999999999999997444 467777 999999999995434443 32 8999
Q ss_pred EEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChh-ccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEE
Q 041155 338 LGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDF-FANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEML 416 (471)
Q Consensus 338 L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L 416 (471)
|++++|.+++..|..+..+++|++|++++|+++. +|.. +..+++|+.|++++|++++..+..+.... ....++.+
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~---~~~~l~~l 254 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE---TNSLIKKF 254 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcccccccccccccc---ccchhhcc
Confidence 9999999999999999999999999999999974 5544 45689999999999999986655544322 22378899
Q ss_pred EcccCcCcc----cCCC-CCCCCCCCEEECcCCcccccCchh-hhcCCCCCEEECcCCCCC
Q 041155 417 YLSSNEITG----SVPD-LGGFSSLKELYLENNRLNGFTNNS-IGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 417 ~L~~N~l~g----~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~ 471 (471)
+++++.+++ .+|. ++.+++|++|++++|+++ .+|.. +..+++|++|++++|+++
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 999999887 4676 889999999999999999 56665 589999999999999874
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4e-27 Score=241.12 Aligned_cols=245 Identities=23% Similarity=0.249 Sum_probs=175.4
Q ss_pred EEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCE
Q 041155 161 IKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240 (471)
Q Consensus 161 ~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~ 240 (471)
..++.++ ..++ .+|..+. +++++|+|++|.+++. .|..|.++++|++|+|++|.+++..|..|.++++|++
T Consensus 57 ~~v~c~~-----~~l~-~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 57 SKVVCTR-----RGLS-EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp CEEECCS-----SCCS-SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cEEEECC-----CCcC-ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 4556665 3444 4665443 6889999999999875 6788889999999999999998777788888888888
Q ss_pred EEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcc-cccCCCCCCcccEE
Q 041155 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPL-SLSNLNYSTSLQFL 319 (471)
Q Consensus 241 L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~-~l~~l~~~~~L~~L 319 (471)
|+|++|.+...+. ..+..+++|++|++++|.+...+ +..+.++++|++|++++|+..+.++. .+..+ ++|++|
T Consensus 128 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---~~L~~L 201 (452)
T 3zyi_A 128 LELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIP--SYAFNRVPSLMRLDLGELKKLEYISEGAFEGL---FNLKYL 201 (452)
T ss_dssp EECCSSCCSBCCT-TTSSSCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTTTTTC---TTCCEE
T ss_pred EECCCCcCCccCh-hhhcccCCCCEEECCCCCcceeC--HhHHhcCCcccEEeCCCCCCccccChhhccCC---CCCCEE
Confidence 8888888654432 34677788888888888777653 23567777777777777544444443 45555 666666
Q ss_pred ECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcH
Q 041155 320 ELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPE 399 (471)
Q Consensus 320 ~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 399 (471)
++++|++++ +| .+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 202 ~L~~n~l~~--------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 202 NLGMCNIKD--------------------MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp ECTTSCCSS--------------------CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred ECCCCcccc--------------------cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 666666552 22 356677777777777777776677777777777777777777776676
Q ss_pred HhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCccc
Q 041155 400 LIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLN 447 (471)
Q Consensus 400 ~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~ 447 (471)
.+..++ +|++|+|++|++++..+. +..+++|+.|+|++|.+.
T Consensus 261 ~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 261 AFDGLA------SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTCT------TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HhcCCC------CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 666666 777777777777765555 677777777777777665
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=240.08 Aligned_cols=245 Identities=23% Similarity=0.240 Sum_probs=168.0
Q ss_pred EEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCE
Q 041155 161 IKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240 (471)
Q Consensus 161 ~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~ 240 (471)
..++..+ ..++ .+|..+. +++++|+|++|.+++. .+..+.++++|++|+|++|.+++..|..|.++++|++
T Consensus 46 ~~v~c~~-----~~l~-~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 46 SKVICVR-----KNLR-EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp CEEECCS-----CCCS-SCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CEEEeCC-----CCcC-cCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 4555555 3444 5666543 5788888888888864 5677888888888888888888666677778888888
Q ss_pred EEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc-ccccCCCCCCcccEE
Q 041155 241 LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFL 319 (471)
Q Consensus 241 L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p-~~l~~l~~~~~L~~L 319 (471)
|++++|++...+. ..+..+++|++|++++|.+...+ +..+..+++|++|++++|+..+.++ ..+.++ ++|++|
T Consensus 117 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---~~L~~L 190 (440)
T 3zyj_A 117 LELFDNRLTTIPN-GAFVYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSYISEGAFEGL---SNLRYL 190 (440)
T ss_dssp EECCSSCCSSCCT-TTSCSCSSCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTTTTTC---SSCCEE
T ss_pred EECCCCcCCeeCH-hHhhccccCceeeCCCCcccccC--HHHhhhCcccCEeCCCCCCCcceeCcchhhcc---cccCee
Confidence 8888887654432 34667777777777777776553 2356677777777777754444343 345555 666666
Q ss_pred ECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcH
Q 041155 320 ELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPE 399 (471)
Q Consensus 320 ~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 399 (471)
++++|.++ .+| .+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 191 ~L~~n~l~--------------------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 191 NLAMCNLR--------------------EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp ECTTSCCS--------------------SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred cCCCCcCc--------------------ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 66666555 233 256677777777777777776677777777777777777777766666
Q ss_pred HhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCccc
Q 041155 400 LIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLN 447 (471)
Q Consensus 400 ~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~ 447 (471)
.+..++ +|++|+|++|++++..+. +..+++|+.|+|++|.+.
T Consensus 250 ~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 250 AFDNLQ------SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSTTCT------TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhcCCC------CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 666666 677777777777765555 677777777777777664
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.4e-28 Score=232.18 Aligned_cols=268 Identities=21% Similarity=0.181 Sum_probs=184.5
Q ss_pred EEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCE
Q 041155 161 IKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQH 240 (471)
Q Consensus 161 ~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~ 240 (471)
+.++.++ +.++ .+|..+ .++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+.++++|++
T Consensus 14 ~~~~c~~-----~~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQ-----QGLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECCS-----SCCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred eEEEcCc-----CCcc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence 4566665 4454 456543 46899999999999874 5567899999999999999999877889999999999
Q ss_pred EEccCCC-CCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEE
Q 041155 241 LDLSLNH-LFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFL 319 (471)
Q Consensus 241 L~L~~n~-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L 319 (471)
|++++|. +... .+..+..+++|++|++++|.+++.+ +..+..+++|++|++++|.+++..+..++.+ ++|++|
T Consensus 85 L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L 158 (285)
T 1ozn_A 85 LDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDL---GNLTHL 158 (285)
T ss_dssp EECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEE
T ss_pred EeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHhccC---CCccEE
Confidence 9999997 4443 2355888999999999999998873 3568889999999999999988777677777 888888
Q ss_pred ECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcH
Q 041155 320 ELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPE 399 (471)
Q Consensus 320 ~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 399 (471)
++++|++++.. +..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.
T Consensus 159 ~l~~n~l~~~~-------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 159 FLHGNRISSVP-------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp ECCSSCCCEEC-------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred ECCCCcccccC-------------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 88888776422 22355566666666666666665566666666666666666666654445
Q ss_pred HhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCchhhhc--CCCCCEEECcCC
Q 041155 400 LIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQ--MSKLRTLSLNGN 468 (471)
Q Consensus 400 ~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip~~l~~--l~~L~~L~Ls~N 468 (471)
.+..++ +|++|++++|.+....+.......++.+..+.+.+....|..+.. +..++..++.+|
T Consensus 220 ~~~~l~------~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 220 ALAPLR------ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHTTCT------TCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HcccCc------ccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 555555 566666666666543332111122334445556666666655432 333444444443
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.5e-26 Score=241.52 Aligned_cols=254 Identities=26% Similarity=0.254 Sum_probs=167.2
Q ss_pred eEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCC
Q 041155 160 VIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQ 239 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~ 239 (471)
++.|++++ |.++ .+|..+. ++|++|++++|.++. +|. .+++|++|+|++|+++ .+|. .+++|+
T Consensus 42 l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~ 104 (622)
T 3g06_A 42 NAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLL 104 (622)
T ss_dssp CCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCC
T ss_pred CcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCC
Confidence 55667766 4555 5665554 677777777777773 555 4567777777777776 4665 567777
Q ss_pred EEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEE
Q 041155 240 HLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFL 319 (471)
Q Consensus 240 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L 319 (471)
+|++++|.+...+. .+++|+.|++++|++++.+. .+++|++|++++|++++ +|. .+ ++|+.|
T Consensus 105 ~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~-l~~---~~---~~L~~L 166 (622)
T 3g06_A 105 ELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLAS-LPA---LP---SELCKL 166 (622)
T ss_dssp EEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC---CC---TTCCEE
T ss_pred EEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcCCcCCC-cCC---cc---CCCCEE
Confidence 77777777655442 45677777777777776542 23677777777777765 332 12 567777
Q ss_pred ECCCCcCCCccccc--cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccC
Q 041155 320 ELSENNLTNSIYPY--NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHF 397 (471)
Q Consensus 320 ~Ls~N~l~g~ip~~--~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 397 (471)
++++|.+++ +|.. +|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. +++|+.|++++|++++ +
T Consensus 167 ~L~~N~l~~-l~~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 167 WAYNNQLTS-LPMLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp ECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-C
T ss_pred ECCCCCCCC-CcccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-C
Confidence 777777765 3332 67777777777764 4432 356777777777777 45542 3667777777777774 5
Q ss_pred cHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 398 PELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 398 p~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
| ..++ +|++|++++|+++ .+|. .+++|++|++++|+++ .+|..+..+++|+.|+|++|+++
T Consensus 237 p---~~l~------~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 237 P---VLPS------ELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp C---CCCT------TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred C---CCCC------cCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 5 2223 6777777777776 3554 4567777777777777 56777777777777777777763
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.7e-29 Score=241.59 Aligned_cols=257 Identities=21% Similarity=0.209 Sum_probs=184.1
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
+++..+++. +.+...++..+..+++|++|++++|.+++. .|..++++++|++|+|++|.+++..| +..+++|
T Consensus 11 ~l~i~~ls~-----~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L 82 (317)
T 3o53_A 11 RYKIEKVTD-----SSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTL 82 (317)
T ss_dssp EEEEESCCT-----TTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTC
T ss_pred ceeEeeccc-----cchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCC
Confidence 355556655 566544555556778999999999999975 67889999999999999999986554 8899999
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccE
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 318 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~ 318 (471)
++|++++|.+.. +...++|++|++++|.+++.+ ...+++|++|++++|++++..|..++.+ ++|++
T Consensus 83 ~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~ 148 (317)
T 3o53_A 83 RTLDLNNNYVQE------LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCR---SRVQY 148 (317)
T ss_dssp CEEECCSSEEEE------EEECTTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSCCCSGGGBCTGGG---SSEEE
T ss_pred CEEECcCCcccc------ccCCCCcCEEECCCCccCCcC-----ccccCCCCEEECCCCCCCCccchhhhcc---CCCCE
Confidence 999999998543 345589999999999988763 2347889999999999998777777777 88888
Q ss_pred EECCCCcCCCccccccccEEEcccccCccCcCccc-cCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccC
Q 041155 319 LELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAF-KHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHF 397 (471)
Q Consensus 319 L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 397 (471)
|++++|.+++.. |..+ ..+++|++|++++|++++. |. ...+++|++|++++|++++ +
T Consensus 149 L~Ls~N~l~~~~-------------------~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l 206 (317)
T 3o53_A 149 LDLKLNEIDTVN-------------------FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-M 206 (317)
T ss_dssp EECTTSCCCEEE-------------------GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-E
T ss_pred EECCCCCCCccc-------------------HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-c
Confidence 888888777532 3333 3456677777777776643 32 2236667777777777764 3
Q ss_pred cHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCccc-ccCchhhhcCCCCCEEECc
Q 041155 398 PELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLN-GFTNNSIGQMSKLRTLSLN 466 (471)
Q Consensus 398 p~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls 466 (471)
|..+..++ +|++|++++|++++ +|. +..+++|++|++++|.++ +.+|..+..+++|+.++++
T Consensus 207 ~~~~~~l~------~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 207 GPEFQSAA------GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CGGGGGGT------TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhcccC------cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 44455555 67777777777664 444 666677777777777776 5566666666666655554
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=7.5e-30 Score=248.56 Aligned_cols=246 Identities=21% Similarity=0.207 Sum_probs=117.5
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCC-------CCCCCCeEeCCCCcccCCCCcc
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIG-------SLTKLSYLDLSFAEFEGPIPSH 231 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~-------~l~~L~~L~Ls~n~l~g~ip~~ 231 (471)
+++.+++++ |.+ .+|..+... |++|++++|.++...+|..+. ++++|++|++++|.+++.+|..
T Consensus 44 ~L~~l~l~~-----n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 44 SLEYLLKRV-----DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp ECTTHHHHC-----CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred CceeEeecc-----ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 344455555 455 566655544 666677777663223555554 5667777777777777666665
Q ss_pred c--cCCCCCCEEEccCCCCCCCCChhhhcCC-----CCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCC-
Q 041155 232 L--GNLSALQHLDLSLNHLFSVGNLDWLSHL-----SSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV- 303 (471)
Q Consensus 232 l--~~l~~L~~L~L~~n~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~- 303 (471)
+ ..+++|++|++++|++...+ ..++.+ ++|++|++++|++.+.+ +..++.+++|++|++++|++.+.+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRD--AWLAELQQWLKPGLKVLSIAQAHSLNFS--CEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSS--SHHHHHHTTCCTTCCEEEEESCSCCCCC--TTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchh--HHHHHHHHhhcCCCcEEEeeCCCCccch--HHHhccCCCCCEEECCCCCcCcchH
Confidence 5 56666666666666644432 223333 44555555555444432 123444444444444444443321
Q ss_pred -cccc--cCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcC-ccccCCCCCCEEeCcCCcCcccCC-hhcc
Q 041155 304 -PLSL--SNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIP-VAFKHMVSLSFLGLASNEFEGGVP-DFFA 378 (471)
Q Consensus 304 -p~~l--~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~ 378 (471)
|..+ +.+ ++|++|++++|++++. +.++ ..+..+++|++|++++|++++.+| ..+.
T Consensus 191 ~~~~~~~~~l---~~L~~L~L~~N~l~~~-----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 191 LISALCPLKF---PTLQVLALRNAGMETP-----------------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp HHHHSCTTSC---TTCCEEECTTSCCCCH-----------------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred HHHHHHhccC---CCCCEEECCCCcCcch-----------------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 1122 233 3444444444433310 0111 122344455555555555554432 2233
Q ss_pred CCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCccc
Q 041155 379 NMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLN 447 (471)
Q Consensus 379 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~ 447 (471)
.+++|++|++++|+++ .+|..+. + +|++|++++|++++. |.+..+++|++|++++|.++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~------~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--A------KLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--S------EEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--C------CceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 3445555555555554 4444332 2 455555555555443 33444444555555555444
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.8e-29 Score=245.85 Aligned_cols=250 Identities=24% Similarity=0.225 Sum_probs=202.8
Q ss_pred hhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcc-cCCCCcccc-------CCCCCCEEEccCCCCCCCCCh
Q 041155 183 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEF-EGPIPSHLG-------NLSALQHLDLSLNHLFSVGNL 254 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l-~g~ip~~l~-------~l~~L~~L~L~~n~~~~~~~~ 254 (471)
++..++|++|++++|.+ . +|..+... |++|+|++|.+ .+.+|..+. ++++|++|++++|.+......
T Consensus 39 ~~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34567889999999999 4 78876654 99999999999 567888776 799999999999997643322
Q ss_pred hh-hcCCCCCcEEEcCCccCCCCCchhhhhCCC-----CCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCC
Q 041155 255 DW-LSHLSSLTYLDLGSNNLSRSTDWLQVVGNL-----PLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTN 328 (471)
Q Consensus 255 ~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-----~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g 328 (471)
.. +..+++|++|++++|++++.+. .++.+ ++|++|++++|++++..|..++.+ ++|++|++++|++.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDA---WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF---PALSTLDLSDNPELG 187 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSS---HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC---SSCCEEECCSCTTCH
T ss_pred HHHHhcCCCccEEEccCCCCcchhH---HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC---CCCCEEECCCCCcCc
Confidence 22 2889999999999999998754 44444 899999999999999888888888 889999998888765
Q ss_pred ccccccccEEEcccccCccCcCccc--cCCCCCCEEeCcCCcCcc--cCC-hhccCCCCCCEEeCcCCcCcccCcH-Hhh
Q 041155 329 SIYPYNLVLLGLDSNLLRGSIPVAF--KHMVSLSFLGLASNEFEG--GVP-DFFANMCSLTMLNISDNKLRGHFPE-LIQ 402 (471)
Q Consensus 329 ~ip~~~L~~L~Ls~n~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g--~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~ 402 (471)
.++ +|..+ +.+++|++|++++|++++ .++ ..+..+++|++|++++|++++.+|. .+.
T Consensus 188 ~~~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 188 ERG-----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp HHH-----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred chH-----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 321 23333 788999999999999983 333 3346789999999999999987753 333
Q ss_pred hccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 403 NLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 403 ~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
.++ +|++|++++|+++ .+|. +. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 251 ~l~------~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 251 WPS------QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCT------TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hcC------CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 344 8999999999999 7787 65 8999999999999987 65 899999999999999985
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=9.4e-30 Score=260.95 Aligned_cols=300 Identities=20% Similarity=0.177 Sum_probs=210.0
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhh-CCC----CCCEEeCCCCCCCCC---CcCccCCCCCCCCeEeCCCCcccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALL-QLH----RLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEFEGPIP 229 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~-~l~----~L~~L~Ls~n~l~g~---~ip~~l~~l~~L~~L~Ls~n~l~g~ip 229 (471)
+++++|++++ |.++...+..+. .++ +|++|++++|.++.. .+|..+.++++|++|++++|.+++..+
T Consensus 56 ~~L~~L~Ls~-----n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 56 PALAELNLRS-----NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp TTCCEEECTT-----CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred CCcCEEeCCC-----CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 3578888887 566654444443 344 688888888888741 257778888888888888888775444
Q ss_pred cccc-----CCCCCCEEEccCCCCCCCCC---hhhhcCCCCCcEEEcCCccCCCCC--chhhhhC-CCCCCCEEEecCCC
Q 041155 230 SHLG-----NLSALQHLDLSLNHLFSVGN---LDWLSHLSSLTYLDLGSNNLSRST--DWLQVVG-NLPLLTTLYLYRCH 298 (471)
Q Consensus 230 ~~l~-----~l~~L~~L~L~~n~~~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~l~-~l~~L~~L~l~~n~ 298 (471)
..+. ..++|++|++++|.+..... ...+..+++|++|++++|.+.... .+...+. ..++|++|++++|.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 4332 25678888888887544321 234566788888888888876541 1111221 35688888888888
Q ss_pred CCCC----CcccccCCCCCCcccEEECCCCcCCCcc-----c-----cccccEEEcccccCccC----cCccccCCCCCC
Q 041155 299 LPPI----VPLSLSNLNYSTSLQFLELSENNLTNSI-----Y-----PYNLVLLGLDSNLLRGS----IPVAFKHMVSLS 360 (471)
Q Consensus 299 l~g~----~p~~l~~l~~~~~L~~L~Ls~N~l~g~i-----p-----~~~L~~L~Ls~n~l~g~----ip~~l~~l~~L~ 360 (471)
+++. ++..+..+ ++|++|++++|.+++.. + ..+|++|++++|.+++. ++..+..+++|+
T Consensus 211 l~~~~~~~l~~~l~~~---~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASK---ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp CBTTHHHHHHHHHHHC---TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CcHHHHHHHHHHHHhC---CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 8774 45566666 78888888888876532 1 12788888888888764 667777788888
Q ss_pred EEeCcCCcCcccCChhccC-----CCCCCEEeCcCCcCccc----CcHHhhhccCCCCcCCccEEEcccCcCcccCCC-C
Q 041155 361 FLGLASNEFEGGVPDFFAN-----MCSLTMLNISDNKLRGH----FPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-L 430 (471)
Q Consensus 361 ~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g~----ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~ 430 (471)
+|++++|.+++..+..+.. .++|++|++++|.+++. +|..+..++ +|++|++++|.+++..+. +
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~------~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR------FLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS------SCCEEECCSSBCHHHHHHHH
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC------CccEEEccCCccccccHHHH
Confidence 8888888887654443332 26888888888888865 455566666 788888888888765443 3
Q ss_pred C-----CCCCCCEEECcCCcccc----cCchhhhcCCCCCEEECcCCCCC
Q 041155 431 G-----GFSSLKELYLENNRLNG----FTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 431 ~-----~l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
. ..++|++|++++|++++ .+|..+..+++|++|++++|+++
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 2 26688888888888886 67778888888888888888764
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-26 Score=237.48 Aligned_cols=229 Identities=24% Similarity=0.219 Sum_probs=144.0
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
.+++.|+|++ |.+++..|..|.++++|++|+|++|.+++. .|..+.++++|++|+|++|.+++..+..+..+++
T Consensus 75 ~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLME-----NNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcC-----CcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 3566677766 566666666677777777777777777654 5566677777777777777776444445666777
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCccc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~ 317 (471)
|++|++++|.+...+. ..+.++++|++|++++|+..+... ...+..+++|++|++++|++++. | .+..+ ++|+
T Consensus 149 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l---~~L~ 221 (452)
T 3zyi_A 149 LRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL---VGLE 221 (452)
T ss_dssp CCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC-C-CCTTC---TTCC
T ss_pred CCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc-c-ccccc---cccc
Confidence 7777777776543332 236667777777777644333311 23466677777777777776653 3 23344 5555
Q ss_pred EEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccC
Q 041155 318 FLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHF 397 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 397 (471)
.|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|+.|+|++|++++..
T Consensus 222 ~L~Ls~N~l~-------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 222 ELEMSGNHFP-------------------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp EEECTTSCCS-------------------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEECcCCcCc-------------------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 5555555444 344556666777777777777777666666777777777777777777555
Q ss_pred cHHhhhccCCCCcCCccEEEcccCcCc
Q 041155 398 PELIQNLSSGCTKNSLEMLYLSSNEIT 424 (471)
Q Consensus 398 p~~l~~l~~~~~~~~L~~L~L~~N~l~ 424 (471)
+..+..++ +|+.|+|++|.+.
T Consensus 283 ~~~~~~l~------~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLR------YLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCT------TCCEEECCSSCEE
T ss_pred hHHhcccc------CCCEEEccCCCcC
Confidence 55555555 6777777777654
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=235.66 Aligned_cols=243 Identities=23% Similarity=0.315 Sum_probs=112.2
Q ss_pred EEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCC
Q 041155 191 YLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGS 270 (471)
Q Consensus 191 ~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~ 270 (471)
.++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+.... ...+.++++|++|++++
T Consensus 47 ~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNLR--EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCCS--SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCS
T ss_pred EEEeCCCCcC--cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCC
Confidence 4444444444 2444332 34555555555554444444555555555555555433222 12344455555555555
Q ss_pred ccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcC
Q 041155 271 NNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIP 350 (471)
Q Consensus 271 n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip 350 (471)
|+++..+ +..+..+++|++|++++|.+++..+..+.++ ++|++|++++|+..+.+ .+
T Consensus 122 n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l---~~L~~L~l~~~~~l~~i------------------~~ 178 (440)
T 3zyj_A 122 NRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRI---PSLRRLDLGELKRLSYI------------------SE 178 (440)
T ss_dssp SCCSSCC--TTTSCSCSSCCEEECCSCCCCEECTTTTTTC---TTCCEEECCCCTTCCEE------------------CT
T ss_pred CcCCeeC--HhHhhccccCceeeCCCCcccccCHHHhhhC---cccCEeCCCCCCCccee------------------Cc
Confidence 5544432 1234445555555555555544433344444 44444444443222111 11
Q ss_pred ccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-
Q 041155 351 VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD- 429 (471)
Q Consensus 351 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~- 429 (471)
..+..+++|++|++++|+++ .+|. +..+++|+.|+|++|++++..|..+..++ +|+.|++++|++++..|.
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM------HLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCT------TCCEEECTTCCCCEECTTS
T ss_pred chhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCc------cCCEEECCCCceeEEChhh
Confidence 13444445555555555554 3332 44445555555555555544444444444 455555555555544444
Q ss_pred CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCC
Q 041155 430 LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNS 469 (471)
Q Consensus 430 ~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 469 (471)
+..+++|++|+|++|++++..+..+..+++|+.|+|++|+
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 4455555555555555554444444445555555555554
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.4e-27 Score=247.68 Aligned_cols=243 Identities=26% Similarity=0.274 Sum_probs=198.2
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSAL 238 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L 238 (471)
+++.|++++ |.++ .+|. .+++|++|+|++|.+++ +|. .+++|++|++++|.++ .+|. .+++|
T Consensus 62 ~L~~L~L~~-----N~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L 123 (622)
T 3g06_A 62 HITTLVIPD-----NNLT-SLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLT-HLPA---LPSGL 123 (622)
T ss_dssp TCSEEEECS-----CCCS-CCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCC-CCCC---CCTTC
T ss_pred CCcEEEecC-----CCCC-CCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCC-CCCC---CCCCc
Confidence 578899998 5665 5666 57899999999999984 676 6789999999999998 4666 56889
Q ss_pred CEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccE
Q 041155 239 QHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQF 318 (471)
Q Consensus 239 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~ 318 (471)
++|++++|++...+. .+++|++|++++|.+++.+. .+++|+.|++++|.+++ +| ..+ ++|+.
T Consensus 124 ~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~-l~---~~~---~~L~~ 185 (622)
T 3g06_A 124 CKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA------LPSELCKLWAYNNQLTS-LP---MLP---SGLQE 185 (622)
T ss_dssp CEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC-CC---CCC---TTCCE
T ss_pred CEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCC------ccCCCCEEECCCCCCCC-Cc---ccC---CCCcE
Confidence 999999999766552 34889999999999987643 34689999999999987 45 334 78999
Q ss_pred EECCCCcCCCccccc--cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCccc
Q 041155 319 LELSENNLTNSIYPY--NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGH 396 (471)
Q Consensus 319 L~Ls~N~l~g~ip~~--~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 396 (471)
|++++|.+++ +|.. +|+.|++++|.++ .+|.. +++|++|++++|++++ +| ..+++|+.|++++|+++ .
T Consensus 186 L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~ 255 (622)
T 3g06_A 186 LSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-S 255 (622)
T ss_dssp EECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-C
T ss_pred EECCCCCCCC-CCCccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-c
Confidence 9999999987 4333 8999999999998 56643 4789999999999995 77 45688999999999998 5
Q ss_pred CcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcC
Q 041155 397 FPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQM 457 (471)
Q Consensus 397 ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 457 (471)
+|. .++ +|+.|+|++|+++ .+|. ++.+++|+.|+|++|.+++.+|..+..+
T Consensus 256 lp~---~~~------~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 256 LPM---LPS------GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCC---CCT------TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCc---ccc------cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 665 334 8999999999999 7787 9999999999999999999888876543
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.1e-29 Score=258.31 Aligned_cols=303 Identities=24% Similarity=0.188 Sum_probs=236.4
Q ss_pred ceEEEEeCCCCCCCCCccc----ccchhhhCCCCCCEEeCCCCCCCCCCcCc-cCCCCC----CCCeEeCCCCcccC---
Q 041155 159 HVIKLEIQPIDFGSFPLRG----TISPALLQLHRLTYLDLSLNNFSGSPIPE-FIGSLT----KLSYLDLSFAEFEG--- 226 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g----~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~-~l~~l~----~L~~L~Ls~n~l~g--- 226 (471)
++++|++++ |.+++ .++..+..+++|++|++++|.+++. .+. ....++ +|++|++++|.++.
T Consensus 29 ~L~~L~L~~-----~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 29 QCQVVRLDD-----CGLTEARCKDISSALRVNPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TCSEEEEES-----SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-HHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CccEEEccC-----CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-HHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 578899998 56653 5678888999999999999998764 332 233444 79999999999984
Q ss_pred -CCCccccCCCCCCEEEccCCCCCCCCChh---h-hcCCCCCcEEEcCCccCCCCC--chhhhhCCCCCCCEEEecCCCC
Q 041155 227 -PIPSHLGNLSALQHLDLSLNHLFSVGNLD---W-LSHLSSLTYLDLGSNNLSRST--DWLQVVGNLPLLTTLYLYRCHL 299 (471)
Q Consensus 227 -~ip~~l~~l~~L~~L~L~~n~~~~~~~~~---~-l~~l~~L~~L~Ls~n~l~~~~--~~~~~l~~l~~L~~L~l~~n~l 299 (471)
.+|..+..+++|++|++++|.+....... . ....++|++|++++|.+++.. .++..+..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 56889999999999999999854322111 1 223568999999999998752 3456777889999999999998
Q ss_pred CCCCcccccC-----CCCCCcccEEECCCCcCCCc----ccc-----ccccEEEcccccCccCc-----CccccCCCCCC
Q 041155 300 PPIVPLSLSN-----LNYSTSLQFLELSENNLTNS----IYP-----YNLVLLGLDSNLLRGSI-----PVAFKHMVSLS 360 (471)
Q Consensus 300 ~g~~p~~l~~-----l~~~~~L~~L~Ls~N~l~g~----ip~-----~~L~~L~Ls~n~l~g~i-----p~~l~~l~~L~ 360 (471)
++..+..+.. . ++|++|++++|.+++. ++. .+|++|++++|.+++.. +..+..+++|+
T Consensus 183 ~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSP---CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp HHHHHHHHHHHHHHSC---CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred chHHHHHHHHHHhcCC---CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 7654444432 3 6899999999999874 333 28999999999988643 22334689999
Q ss_pred EEeCcCCcCccc----CChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc----CCC-CC
Q 041155 361 FLGLASNEFEGG----VPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS----VPD-LG 431 (471)
Q Consensus 361 ~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~----ip~-~~ 431 (471)
+|++++|++++. ++..+..+++|++|++++|.+++..+..+...-. ...++|++|++++|.+++. ++. +.
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-EPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc-cCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 999999999964 7788888999999999999998776666665410 0112899999999999876 455 77
Q ss_pred CCCCCCEEECcCCcccccCchhhhc-----CCCCCEEECcCCCCC
Q 041155 432 GFSSLKELYLENNRLNGFTNNSIGQ-----MSKLRTLSLNGNSLR 471 (471)
Q Consensus 432 ~l~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~ 471 (471)
.+++|++|++++|++++..+..+.. .++|++|++++|+++
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 8899999999999999876666553 789999999999874
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=245.86 Aligned_cols=242 Identities=23% Similarity=0.234 Sum_probs=190.5
Q ss_pred cchhhhCCC----CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCCh
Q 041155 179 ISPALLQLH----RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNL 254 (471)
Q Consensus 179 ip~~l~~l~----~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~ 254 (471)
+|..+..+. +|++|+|++|.+++. .|..++.+++|++|+|++|.+++.+| +..+++|++|++++|.+..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---- 94 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE---- 94 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE----
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC----
Confidence 455555544 899999999999985 77889999999999999999987655 8899999999999998543
Q ss_pred hhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcccccc
Q 041155 255 DWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYN 334 (471)
Q Consensus 255 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~ 334 (471)
+...++|++|++++|.+++.+. ..+++|++|++++|.+++..|..++.+ ++|+.|++++|.+++
T Consensus 95 --l~~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~------ 158 (487)
T 3oja_A 95 --LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCR---SRVQYLDLKLNEIDT------ 158 (487)
T ss_dssp --EEECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGG---SSEEEEECTTSCCCE------
T ss_pred --CCCCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCC---CCCCEEECCCCCCCC------
Confidence 3344889999999999888732 356788999999999988888788777 778888877777664
Q ss_pred ccEEEcccccCccCcCcccc-CCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCc
Q 041155 335 LVLLGLDSNLLRGSIPVAFK-HMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413 (471)
Q Consensus 335 L~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L 413 (471)
.+|..+. .+++|++|+|++|.+++. |. ...+++|+.|+|++|.+++. |..+..++ +|
T Consensus 159 -------------~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~------~L 216 (487)
T 3oja_A 159 -------------VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAA------GV 216 (487)
T ss_dssp -------------EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGT------TC
T ss_pred -------------cChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCCC------Cc
Confidence 4455554 678888889988888865 33 33588889999999988864 44477776 88
Q ss_pred cEEEcccCcCcccCCC-CCCCCCCCEEECcCCccc-ccCchhhhcCCCCCEEECc
Q 041155 414 EMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLN-GFTNNSIGQMSKLRTLSLN 466 (471)
Q Consensus 414 ~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls 466 (471)
+.|++++|.+++ +|. ++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus 217 ~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999998886 455 888888999999999888 6777777777777666553
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.8e-26 Score=217.48 Aligned_cols=222 Identities=25% Similarity=0.313 Sum_probs=154.1
Q ss_pred CeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEe
Q 041155 215 SYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYL 294 (471)
Q Consensus 215 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l 294 (471)
++++.+++.++ .+|..+ .++|++|++++|.+...+. ..+.++++|++|++++|.+++.. +..+..+++|++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeC--HhhcCCccCCCEEeC
Confidence 67888888887 677655 4688999999888655432 34778888889998888887763 347788888888888
Q ss_pred cCCC-CCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccC
Q 041155 295 YRCH-LPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGV 373 (471)
Q Consensus 295 ~~n~-l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 373 (471)
++|. +....|..+..+ ++|++|++++|.+++ ..|..+..+++|++|++++|++++..
T Consensus 88 ~~n~~l~~~~~~~~~~l---~~L~~L~l~~n~l~~-------------------~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGL---GRLHTLHLDRCGLQE-------------------LGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp CSCTTCCCCCTTTTTTC---TTCCEEECTTSCCCC-------------------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCccccCHHHhcCC---cCCCEEECCCCcCCE-------------------ECHhHhhCCcCCCEEECCCCcccccC
Confidence 8887 666667777777 778888887777664 33445566666666666666666544
Q ss_pred ChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCch
Q 041155 374 PDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNN 452 (471)
Q Consensus 374 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~ 452 (471)
+..++.+++|++|++++|++++..+..+..++ +|++|++++|.+++..|. ++.+++|++|++++|++++..+.
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCcc------ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 45566666666666666666654444455555 666666666666666665 66666666666666666665555
Q ss_pred hhhcCCCCCEEECcCCCC
Q 041155 453 SIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 453 ~l~~l~~L~~L~Ls~N~l 470 (471)
.+..+++|++|++++|++
T Consensus 220 ~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp HHTTCTTCCEEECCSSCE
T ss_pred HcccCcccCEEeccCCCc
Confidence 566666666666666654
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.1e-27 Score=228.46 Aligned_cols=242 Identities=18% Similarity=0.200 Sum_probs=200.9
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
+++++|++++ |.+++..|..+..+++|++|++++|.+++. .| +..+++|++|++++|.+++ +| ..++
T Consensus 34 ~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~ 100 (317)
T 3o53_A 34 WNVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYVQE-LL----VGPS 100 (317)
T ss_dssp GGCSEEECTT-----SCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE--ETTCTTCCEEECCSSEEEE-EE----ECTT
T ss_pred CCCCEEECcC-----CccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh--hhhcCCCCEEECcCCcccc-cc----CCCC
Confidence 3689999999 688887788999999999999999999864 43 8899999999999999984 33 3489
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCccccc-CCCCCCcc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLS-NLNYSTSL 316 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~-~l~~~~~L 316 (471)
|++|++++|.+.... ...+++|++|++++|.+++.+ +..++.+++|++|++++|.+++..|..+. .+ ++|
T Consensus 101 L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l---~~L 171 (317)
T 3o53_A 101 IETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS---DTL 171 (317)
T ss_dssp CCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT---TTC
T ss_pred cCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHHHHhhcc---CcC
Confidence 999999999976554 445789999999999999874 34677899999999999999998777664 67 899
Q ss_pred cEEECCCCcCCCcccc---ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 317 QFLELSENNLTNSIYP---YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~---~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
++|++++|.+++..+. .+|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+
T Consensus 172 ~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred CEEECCCCcCcccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 9999999999865322 288899999998885 5556888889999999999988 5788888888999999999998
Q ss_pred c-ccCcHHhhhccCCCCcCCccEEEcc-cCcCcccCCC
Q 041155 394 R-GHFPELIQNLSSGCTKNSLEMLYLS-SNEITGSVPD 429 (471)
Q Consensus 394 ~-g~ip~~l~~l~~~~~~~~L~~L~L~-~N~l~g~ip~ 429 (471)
. +.+|.++..++ +|+.+++. .+.++|..|.
T Consensus 250 ~~~~~~~~~~~~~------~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 250 HCGTLRDFFSKNQ------RVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp BHHHHHHHHHTCH------HHHHHHHHHHHHHHSSSSC
T ss_pred cCcCHHHHHhccc------cceEEECCCchhccCCchh
Confidence 8 77888888877 78888887 4456666655
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-26 Score=237.17 Aligned_cols=232 Identities=18% Similarity=0.193 Sum_probs=196.4
Q ss_pred CceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
++++.|+|++ |.+++..|..+..+++|++|+|++|.+++. +| ++.+++|++|+|++|.+++ +|. .++
T Consensus 34 ~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~-l~~----~~~ 100 (487)
T 3oja_A 34 WNVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYVQE-LLV----GPS 100 (487)
T ss_dssp GGCCEEECCS-----SCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEEEE-EEE----CTT
T ss_pred CCccEEEeeC-----CcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcCCC-CCC----CCC
Confidence 3689999999 688887888999999999999999999974 44 8999999999999999984 343 389
Q ss_pred CCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCccccc-CCCCCCcc
Q 041155 238 LQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLS-NLNYSTSL 316 (471)
Q Consensus 238 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~-~l~~~~~L 316 (471)
|++|++++|.+...+ ...+++|++|++++|.+++.+ +..++.+++|++|++++|.+++.+|..+. .+ ++|
T Consensus 101 L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l---~~L 171 (487)
T 3oja_A 101 IETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS---DTL 171 (487)
T ss_dssp CCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT---TTC
T ss_pred cCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChHHHhhhC---Ccc
Confidence 999999999976654 346789999999999999873 34778899999999999999998888876 67 899
Q ss_pred cEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 317 QFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
+.|++++|.+++..+.. +|++|+|++|.+++ +|+.+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred cEEecCCCccccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 99999999998764332 88899999999986 55558888899999999999985 788888888999999999988
Q ss_pred c-ccCcHHhhhccCCCCcCCccEEEcc
Q 041155 394 R-GHFPELIQNLSSGCTKNSLEMLYLS 419 (471)
Q Consensus 394 ~-g~ip~~l~~l~~~~~~~~L~~L~L~ 419 (471)
. +.+|.++..++ .|+.+++.
T Consensus 250 ~c~~~~~~~~~l~------~L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQ------RVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCH------HHHHHHHH
T ss_pred cCcchHHHHHhCC------CCcEEecc
Confidence 8 67777777776 67777775
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.8e-24 Score=204.32 Aligned_cols=208 Identities=22% Similarity=0.257 Sum_probs=144.9
Q ss_pred CCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEE
Q 041155 213 KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTL 292 (471)
Q Consensus 213 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 292 (471)
+|++|++++|.+++..+..+.++++|++|++++|.+..... ..+.++++|++|++++|.+++.+ +..+..+++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccC--hhhhcCCccccEE
Confidence 45555555555554333345555555555555555332221 23555666666666666666553 2467788889999
Q ss_pred EecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCccc
Q 041155 293 YLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG 372 (471)
Q Consensus 293 ~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 372 (471)
++++|.+.+..+..++.+ ++|++|++++|.+++ ..+|..++.+++|++|++++|++++.
T Consensus 106 ~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~------------------~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 106 VAVETNLASLENFPIGHL---KTLKELNVAHNLIQS------------------FKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECTTSCCCCSTTCCCTTC---TTCCEEECCSSCCCC------------------CCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ECCCCCccccCchhcccC---CCCCEEECcCCccce------------------ecCchhhccCCCCCEEECCCCCCCcC
Confidence 999998888766667777 778888877777653 13577888889999999999999876
Q ss_pred CChhccCCCCCC----EEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCccc
Q 041155 373 VPDFFANMCSLT----MLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLN 447 (471)
Q Consensus 373 ip~~l~~l~~L~----~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~ 447 (471)
.+..+..+++|+ .|++++|.+++..+.. .... +|++|++++|++++..+. ++.+++|++|++++|.++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI------RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SCSC------CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccc-cCCC------cccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 666776666666 8899999988544433 3333 689999999998876666 788899999999999988
Q ss_pred ccCc
Q 041155 448 GFTN 451 (471)
Q Consensus 448 g~ip 451 (471)
+..|
T Consensus 238 c~c~ 241 (276)
T 2z62_A 238 CSCP 241 (276)
T ss_dssp CCTT
T ss_pred ccCC
Confidence 7655
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.3e-23 Score=198.27 Aligned_cols=219 Identities=25% Similarity=0.249 Sum_probs=167.6
Q ss_pred CCCCcceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCc
Q 041155 144 DRCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE 223 (471)
Q Consensus 144 ~~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~ 223 (471)
+.|.|.|..|.-. ...+.+++++ +.++ .+|..+. +++++|++++|.+++. .+..+.++++|++|++++|.
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~-----~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSS-----KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTT-----SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSC
T ss_pred ccCCCCCCCCEeC-CCCCEEEccC-----CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCc
Confidence 6799999887432 3456788887 5666 4666543 6799999999999864 55688999999999999999
Q ss_pred ccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCC
Q 041155 224 FEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV 303 (471)
Q Consensus 224 l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~ 303 (471)
++...+..+.++++|++|++++|.+...+. ..+..+++|++|++++|.+++.+ +..++.+++|++|++++|.+++..
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeC--HHHhCcCcCCCEEECCCCcCCccC
Confidence 984434445789999999999998765442 44678888999999988888774 246778888888888888888766
Q ss_pred cccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCC
Q 041155 304 PLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSL 383 (471)
Q Consensus 304 p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 383 (471)
+..+..+ ++|+.|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 150 ~~~~~~l---~~L~~L~L~~n~l~~-------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 150 KGVFDKL---TSLKELRLYNNQLKR-------------------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTTTTC---TTCCEEECCSSCCSC-------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhHccCC---cccceeEecCCcCcE-------------------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 6666766 777777777776653 334457788889999999999986555567888899
Q ss_pred CEEeCcCCcCcccC
Q 041155 384 TMLNISDNKLRGHF 397 (471)
Q Consensus 384 ~~L~Ls~N~l~g~i 397 (471)
+.|++++|.+....
T Consensus 208 ~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 208 KMLQLQENPWDCTC 221 (270)
T ss_dssp CEEECCSSCBCCSS
T ss_pred CEEEecCCCeeCCC
Confidence 99999999887543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.4e-24 Score=202.28 Aligned_cols=217 Identities=27% Similarity=0.277 Sum_probs=174.8
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhh
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWL 257 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l 257 (471)
.+|..+. ++|++|++++|.+++. .+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.... ...+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~ 96 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAF 96 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTT
T ss_pred ccCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhh
Confidence 4555443 5799999999999864 5558899999999999999998766678999999999999999965543 2458
Q ss_pred cCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCC-CcccccCCCCCCcccEEECCCCcCCCcccccccc
Q 041155 258 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI-VPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLV 336 (471)
Q Consensus 258 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~-~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~ 336 (471)
.++++|++|++++|.+.+.+. ..++.+++|++|++++|.+++. +|..++.+ ++|++|++++|++++
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l---~~L~~L~Ls~N~l~~-------- 163 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---TNLEHLDLSSNKIQS-------- 163 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGC---TTCCEEECCSSCCCE--------
T ss_pred cCCccccEEECCCCCccccCc--hhcccCCCCCEEECcCCccceecCchhhccC---CCCCEEECCCCCCCc--------
Confidence 889999999999999988742 3588999999999999999884 68889888 889999998888774
Q ss_pred EEEcccccCccCcCccccCCCCCC----EEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCC
Q 041155 337 LLGLDSNLLRGSIPVAFKHMVSLS----FLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412 (471)
Q Consensus 337 ~L~Ls~n~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~ 412 (471)
..+..+..+.+|+ +|++++|++++..+. .....+|+.|++++|++++..+..+..++ +
T Consensus 164 -----------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~------~ 225 (276)
T 2z62_A 164 -----------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLT------S 225 (276)
T ss_dssp -----------ECGGGGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCC------S
T ss_pred -----------CCHHHhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccc------c
Confidence 2233454455555 899999999965444 44456899999999999976555567777 8
Q ss_pred ccEEEcccCcCcccCCC
Q 041155 413 LEMLYLSSNEITGSVPD 429 (471)
Q Consensus 413 L~~L~L~~N~l~g~ip~ 429 (471)
|++|++++|.+++..|.
T Consensus 226 L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 226 LQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEEECCSSCBCCCTTT
T ss_pred ccEEEccCCcccccCCc
Confidence 99999999999976653
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.2e-24 Score=203.04 Aligned_cols=227 Identities=22% Similarity=0.296 Sum_probs=154.1
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEE
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLD 267 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~ 267 (471)
.+..+++..+.+... .....+++|++|++++|.++ .++ .+..+++|++|++++|.+... ..+..+++|++|+
T Consensus 20 ~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEE
T ss_pred HHHHHHhcCcccccc---cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEE
Confidence 334455666666542 23456889999999999887 343 578899999999999986554 3588889999999
Q ss_pred cCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCcc
Q 041155 268 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRG 347 (471)
Q Consensus 268 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g 347 (471)
+++|.+++.+ +..++.+++|++|++++|++++..+..++.+ ++|++|++++|.+++..
T Consensus 92 L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~----------------- 149 (272)
T 3rfs_A 92 LTGNQLQSLP--NGVFDKLTNLKELVLVENQLQSLPDGVFDKL---TNLTYLNLAHNQLQSLP----------------- 149 (272)
T ss_dssp CTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCC-----------------
T ss_pred CCCCccCccC--hhHhcCCcCCCEEECCCCcCCccCHHHhccC---CCCCEEECCCCccCccC-----------------
Confidence 9999988774 2457888999999999999988777777777 78888888888777433
Q ss_pred CcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccC
Q 041155 348 SIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSV 427 (471)
Q Consensus 348 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~i 427 (471)
|..++.+++|++|++++|++++..+..++.+++|++|++++|++++..|..+..++ +|++|++++|.+.+.
T Consensus 150 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~~~~~- 220 (272)
T 3rfs_A 150 --KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT------SLQYIWLHDNPWDCT- 220 (272)
T ss_dssp --TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT------TCCEEECCSSCBCCC-
T ss_pred --HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc------CCCEEEccCCCcccc-
Confidence 33345556666666666666654444455566666666666666655554455554 566666666655533
Q ss_pred CCCCCCCCCCEEECcCCcccccCchhhhcCC
Q 041155 428 PDLGGFSSLKELYLENNRLNGFTNNSIGQMS 458 (471)
Q Consensus 428 p~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 458 (471)
+++|+.|+++.|.++|.+|.+++.+.
T Consensus 221 -----~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 221 -----CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -----TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -----CcHHHHHHHHHHhCCCcccCcccccC
Confidence 33455566666666666665555443
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.1e-23 Score=200.83 Aligned_cols=209 Identities=26% Similarity=0.272 Sum_probs=131.1
Q ss_pred hCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCC
Q 041155 184 LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSL 263 (471)
Q Consensus 184 ~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 263 (471)
..+++|+.|++++|.++. ++ .++.+++|++|++++|.+++ + +.+.++++|++|++++|.+..... ..+.++++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPN-GVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred ccccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence 355666666666666652 22 35566666666666666664 2 356666667777776666543331 335666777
Q ss_pred cEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccc
Q 041155 264 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSN 343 (471)
Q Consensus 264 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n 343 (471)
++|++++|.+++.+ +..++.+++|++|++++|++++..+..++.+ ++|+.|++++|++++
T Consensus 112 ~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~--------------- 171 (272)
T 3rfs_A 112 KELVLVENQLQSLP--DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL---TNLTELDLSYNQLQS--------------- 171 (272)
T ss_dssp CEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCC---------------
T ss_pred CEEECCCCcCCccC--HHHhccCCCCCEEECCCCccCccCHHHhccC---ccCCEEECCCCCcCc---------------
Confidence 77777777776653 2346677777777777777776666556666 667777766666553
Q ss_pred cCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcC
Q 041155 344 LLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEI 423 (471)
Q Consensus 344 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l 423 (471)
..+..++.+++|++|++++|++++..|..+..+++|+.|++++|.+.+..| +|+.++++.|.+
T Consensus 172 ----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------------~l~~l~~~~n~~ 234 (272)
T 3rfs_A 172 ----LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------------GIRYLSEWINKH 234 (272)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------------TTHHHHHHHHHT
T ss_pred ----cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------------HHHHHHHHHHhC
Confidence 233345666677777777777776555556667777777777776665433 466666677777
Q ss_pred cccCCC-CCCCCC
Q 041155 424 TGSVPD-LGGFSS 435 (471)
Q Consensus 424 ~g~ip~-~~~l~~ 435 (471)
+|.+|. ++.+..
T Consensus 235 ~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 235 SGVVRNSAGSVAP 247 (272)
T ss_dssp GGGBBCTTSCBCG
T ss_pred CCcccCcccccCC
Confidence 777776 555543
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.5e-25 Score=224.69 Aligned_cols=251 Identities=21% Similarity=0.224 Sum_probs=175.2
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCCC---cCccCCCCCCCCeEeCCCC---cccCCCCccc-------cCCCCCCEEEcc
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGSP---IPEFIGSLTKLSYLDLSFA---EFEGPIPSHL-------GNLSALQHLDLS 244 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~~---ip~~l~~l~~L~~L~Ls~n---~l~g~ip~~l-------~~l~~L~~L~L~ 244 (471)
.++..+..+++|++|+|++|.+++.. ++..+.++++|++|+|++| .+++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 56778888999999999999988641 2344778999999999985 5667777765 688999999999
Q ss_pred CCCCCCCC---ChhhhcCCCCCcEEEcCCccCCCCC--chhhhhCCC---------CCCCEEEecCCCCC-CCCc---cc
Q 041155 245 LNHLFSVG---NLDWLSHLSSLTYLDLGSNNLSRST--DWLQVVGNL---------PLLTTLYLYRCHLP-PIVP---LS 306 (471)
Q Consensus 245 ~n~~~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~l~~l---------~~L~~L~l~~n~l~-g~~p---~~ 306 (471)
+|.+.... .+..+.++++|++|++++|.+++.. .++..+..+ ++|++|++++|+++ +.+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 99865532 1235778889999999999886431 123334444 78888888888887 3444 34
Q ss_pred ccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCc----ccCChhccCCCC
Q 041155 307 LSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFE----GGVPDFFANMCS 382 (471)
Q Consensus 307 l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~----g~ip~~l~~l~~ 382 (471)
+..+ ++|+.|++++|.++..- +...+|..+..+++|++|+|++|.++ +.+|..+..+++
T Consensus 183 l~~~---~~L~~L~L~~n~l~~~g--------------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 183 FQSH---RLLHTVKMVQNGIRPEG--------------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp HHHC---TTCCEEECCSSCCCHHH--------------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred HHhC---CCcCEEECcCCCCCHhH--------------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 5555 67778887777765210 00023335667777777777777775 566777777777
Q ss_pred CCEEeCcCCcCccc----CcHHhhh--ccCCCCcCCccEEEcccCcCcc----cCCC-C-CCCCCCCEEECcCCcccccC
Q 041155 383 LTMLNISDNKLRGH----FPELIQN--LSSGCTKNSLEMLYLSSNEITG----SVPD-L-GGFSSLKELYLENNRLNGFT 450 (471)
Q Consensus 383 L~~L~Ls~N~l~g~----ip~~l~~--l~~~~~~~~L~~L~L~~N~l~g----~ip~-~-~~l~~L~~L~Ls~N~l~g~i 450 (471)
|++|+|++|.+++. +|..+.. ++ +|++|+|++|.+++ .+|. + .++++|++|++++|.+++..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~------~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENI------GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSC------CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCC------CeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 78888887777765 3444432 44 67777887777777 4665 4 55777888888888777766
Q ss_pred c
Q 041155 451 N 451 (471)
Q Consensus 451 p 451 (471)
+
T Consensus 320 ~ 320 (386)
T 2ca6_A 320 D 320 (386)
T ss_dssp H
T ss_pred h
Confidence 4
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4.7e-23 Score=198.30 Aligned_cols=201 Identities=24% Similarity=0.262 Sum_probs=136.5
Q ss_pred ccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCC
Q 041155 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLN 311 (471)
Q Consensus 232 l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~ 311 (471)
+.+++++++++++++.+...+. .+ .+++++|++++|.+++.+ +..+..+++|++|++++|.+++..+. +.+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~--~~--~~~l~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l- 76 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP--DL--PKDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELTKLQVD--GTL- 76 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS--CC--CTTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSCCCEEECC--SCC-
T ss_pred ccccCCccEEECCCCCCCcCCC--CC--CCCCCEEEcCCCcCCccC--HHHhhcCCCCCEEECCCCccCcccCC--CCC-
Confidence 5566777777777777655441 12 256777777777776653 34667777777777777777653221 344
Q ss_pred CCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCC
Q 041155 312 YSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDN 391 (471)
Q Consensus 312 ~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 391 (471)
++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 77 --~~L~~L~Ls~N~l~--------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 77 --PVLGTLDLSHNQLQ--------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp --TTCCEEECCSSCCS--------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred --CcCCEEECCCCcCC--------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 66666666666654 45666677777777777777777655566777777777777777
Q ss_pred cCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 392 KLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 392 ~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
++++..+..+..++ +|+.|+|++|++++..+. +..+++|++|++++|+++ .+|..+..+.+|+.++|++|++
T Consensus 135 ~l~~~~~~~~~~l~------~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 135 ELKTLPPGLLTPTP------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCCCTTTTTTCT------TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCccChhhccccc------CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 77755555555555 777777777777754444 677777777888777777 5666777777777777777765
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.4e-25 Score=219.33 Aligned_cols=258 Identities=22% Similarity=0.220 Sum_probs=177.4
Q ss_pred CCcccccchhhhCCCCCCEEeCCCCCCCCCCcC----ccCCCCC-CCCeEeCCCCcccCCCCccccCC-----CCCCEEE
Q 041155 173 FPLRGTISPALLQLHRLTYLDLSLNNFSGSPIP----EFIGSLT-KLSYLDLSFAEFEGPIPSHLGNL-----SALQHLD 242 (471)
Q Consensus 173 n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip----~~l~~l~-~L~~L~Ls~n~l~g~ip~~l~~l-----~~L~~L~ 242 (471)
|.++|.+|..+...++|++|++++|.+++. .+ ..+.+++ +|++|+|++|.+++..+..+..+ ++|++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 788888888777777789999988888864 44 5667777 88888888888887777666654 7888888
Q ss_pred ccCCCCCCCCCh---hhhcCC-CCCcEEEcCCccCCCCC--chhhhhCCC-CCCCEEEecCCCCCCCCccc----ccCCC
Q 041155 243 LSLNHLFSVGNL---DWLSHL-SSLTYLDLGSNNLSRST--DWLQVVGNL-PLLTTLYLYRCHLPPIVPLS----LSNLN 311 (471)
Q Consensus 243 L~~n~~~~~~~~---~~l~~l-~~L~~L~Ls~n~l~~~~--~~~~~l~~l-~~L~~L~l~~n~l~g~~p~~----l~~l~ 311 (471)
+++|.+...... ..+..+ ++|++|++++|.+++.. .+...+..+ ++|++|++++|.+++..+.. +..+.
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 888875443321 123444 67888888888776652 122334443 57777777777776543322 23330
Q ss_pred CCCcccEEECCCCcCCCccccccccEEEcccccCccCcCc----cccCC-CCCCEEeCcCCcCccc----CChhccC-CC
Q 041155 312 YSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPV----AFKHM-VSLSFLGLASNEFEGG----VPDFFAN-MC 381 (471)
Q Consensus 312 ~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~----~l~~l-~~L~~L~Ls~N~l~g~----ip~~l~~-l~ 381 (471)
++|++|++++|.++ +..+. .+..+ ++|++|+|++|++++. ++..+.. .+
T Consensus 167 --~~L~~L~Ls~n~l~-------------------~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 167 --ANVNSLNLRGNNLA-------------------SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp --TTCCEEECTTSCGG-------------------GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred --ccccEeeecCCCCc-------------------hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 25666666655554 34333 34455 5999999999999863 5556655 45
Q ss_pred CCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc-------CCC-CCCCCCCCEEECcCCcccccCchh
Q 041155 382 SLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS-------VPD-LGGFSSLKELYLENNRLNGFTNNS 453 (471)
Q Consensus 382 ~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~-------ip~-~~~l~~L~~L~Ls~N~l~g~ip~~ 453 (471)
+|++|+|++|.+++..+..+..+. ...++|++|++++|.+.+. ++. +..+++|++||+++|++.+..+..
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 999999999999987766555432 1234899999999984432 233 778889999999999998876554
Q ss_pred h
Q 041155 454 I 454 (471)
Q Consensus 454 l 454 (471)
+
T Consensus 304 ~ 304 (362)
T 3goz_A 304 I 304 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=8.9e-26 Score=238.68 Aligned_cols=298 Identities=11% Similarity=0.052 Sum_probs=200.9
Q ss_pred CceEEEEeCCCCCCCCCcccc----cchhhhCCCCCCEEeCCCCCCCCC---CcCccCCCCCCCCeEeCCCCcccCCCCc
Q 041155 158 GHVIKLEIQPIDFGSFPLRGT----ISPALLQLHRLTYLDLSLNNFSGS---PIPEFIGSLTKLSYLDLSFAEFEGPIPS 230 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~----ip~~l~~l~~L~~L~Ls~n~l~g~---~ip~~l~~l~~L~~L~Ls~n~l~g~ip~ 230 (471)
+++++|+|++ |.+++. ++..+..+++|++|++++|.+++. .++..+.++++|++|++++|.+.+ +|.
T Consensus 164 ~~L~~L~L~~-----~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~ 237 (592)
T 3ogk_B 164 RKIKTLLMEE-----SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG 237 (592)
T ss_dssp TTCSEEECTT-----CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH
T ss_pred CCCCEEECcc-----ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH
Confidence 4577777777 444443 445556777788888877777621 144455667778888888777764 566
Q ss_pred cccCCCCCCEEEccCCCCC-------------------------CCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCC
Q 041155 231 HLGNLSALQHLDLSLNHLF-------------------------SVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGN 285 (471)
Q Consensus 231 ~l~~l~~L~~L~L~~n~~~-------------------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 285 (471)
.+.++++|++|+++..... ....+..+..+++|++|++++|.+++.. +...+..
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~-~~~~~~~ 316 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-HCTLIQK 316 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH-HHHHHTT
T ss_pred HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH-HHHHHHh
Confidence 6666666666666532211 1111223455667777777777654432 2234567
Q ss_pred CCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECC-----------CCcCCCcccc------ccccEEEcccccCccC
Q 041155 286 LPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELS-----------ENNLTNSIYP------YNLVLLGLDSNLLRGS 348 (471)
Q Consensus 286 l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls-----------~N~l~g~ip~------~~L~~L~Ls~n~l~g~ 348 (471)
+++|++|+++.+-..+.++.....+ ++|++|+++ .|.+++.... .+|++|+++.|.+++.
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~---~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYC---KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHC---TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhC---CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 7777777777332222233333445 778888888 3555543211 1788888888888887
Q ss_pred cCccccC-CCCCCEEeCc----CCcCccc-----CChhccCCCCCCEEeCcCC--cCcccCcHHhhh-ccCCCCcCCccE
Q 041155 349 IPVAFKH-MVSLSFLGLA----SNEFEGG-----VPDFFANMCSLTMLNISDN--KLRGHFPELIQN-LSSGCTKNSLEM 415 (471)
Q Consensus 349 ip~~l~~-l~~L~~L~Ls----~N~l~g~-----ip~~l~~l~~L~~L~Ls~N--~l~g~ip~~l~~-l~~~~~~~~L~~ 415 (471)
.+..++. +++|++|+++ .|.+++. ++..+..+++|+.|+++.| .+++..+..++. ++ +|++
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~------~L~~ 467 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP------NVRW 467 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT------TCCE
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc------cceE
Confidence 7777765 8889999996 6777753 4455677889999999754 377777666665 44 8999
Q ss_pred EEcccCcCcc-cCCC-CCCCCCCCEEECcCCccccc-CchhhhcCCCCCEEECcCCCCC
Q 041155 416 LYLSSNEITG-SVPD-LGGFSSLKELYLENNRLNGF-TNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 416 L~L~~N~l~g-~ip~-~~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
|++++|.+++ .++. +..+++|++|++++|.+++. ++..+..+++|++|+|++|+++
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 9999999987 3455 68899999999999999866 4445578999999999999875
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-22 Score=192.14 Aligned_cols=200 Identities=26% Similarity=0.342 Sum_probs=117.0
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcc
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 316 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L 316 (471)
..++++++++.+...+. .+ .+++++|++++|++++.+ +..+..+++|++|++++|.++...+..+..+ ++|
T Consensus 17 ~~~~l~~~~~~l~~ip~--~~--~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l---~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS--NI--PADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNL 87 (270)
T ss_dssp TTTEEECTTSCCSSCCS--CC--CTTCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSCCSCCCTTTTSSC---TTC
T ss_pred CCCEEEccCCCCCccCC--CC--CCCCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCccCeeChhhhcCC---CCC
Confidence 57889999888766542 12 257899999999888764 2467888899999999998887655556677 788
Q ss_pred cEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCccc
Q 041155 317 QFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGH 396 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 396 (471)
++|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus 88 ~~L~l~~n~l~~~~~-------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 88 ETLWVTDNKLQALPI-------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CEEECCSSCCCCCCT-------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCcCCcCCH-------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 888888887775332 2334444455555555555443344444445555555555554433
Q ss_pred CcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 397 FPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 397 ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
.+..+..++ +|++|++++|++++..+. +..+++|++|++++|++++..+..+..+++|+.|+|++|++
T Consensus 149 ~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 149 PKGVFDKLT------SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CHhHccCCc------ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 333333333 455555555554443333 44445555555555555444333444445555555555443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.5e-22 Score=194.73 Aligned_cols=198 Identities=22% Similarity=0.151 Sum_probs=118.6
Q ss_pred hCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCC
Q 041155 184 LQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSL 263 (471)
Q Consensus 184 ~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 263 (471)
.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..+.++++|++|++++|.+...+. .+.+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTC
T ss_pred cccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcC
Confidence 34555555555555555 2444432 455555555555554445555555555555555555433321 2455556
Q ss_pred cEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc-----cccEE
Q 041155 264 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY-----NLVLL 338 (471)
Q Consensus 264 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~-----~L~~L 338 (471)
++|++++|.+...+ ..+..+++|++|++++|++++..|..+..+ ++|++|++++|++++..+.. +|+.|
T Consensus 80 ~~L~Ls~N~l~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHNQLQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSSCCSSCC---CCTTTCTTCCEEECCSSCCCCCCSSTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEECCCCcCCcCc---hhhccCCCCCEEECCCCcCcccCHHHHcCC---CCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 66666666555432 244555566666666666655544555555 55666666666555433221 45555
Q ss_pred EcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcc
Q 041155 339 GLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG 395 (471)
Q Consensus 339 ~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 395 (471)
++++|++++..+..+..+++|++|+|++|+++ .+|..+....+|+.++|++|.+..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 55555665444445677889999999999998 688888888889999999988864
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.1e-24 Score=218.33 Aligned_cols=252 Identities=19% Similarity=0.178 Sum_probs=177.1
Q ss_pred cCccCCCCCCCCeEeCCCCcccCCC----CccccCCCCCCEEEccCCCCCCCC--Chh-------hhcCCCCCcEEEcCC
Q 041155 204 IPEFIGSLTKLSYLDLSFAEFEGPI----PSHLGNLSALQHLDLSLNHLFSVG--NLD-------WLSHLSSLTYLDLGS 270 (471)
Q Consensus 204 ip~~l~~l~~L~~L~Ls~n~l~g~i----p~~l~~l~~L~~L~L~~n~~~~~~--~~~-------~l~~l~~L~~L~Ls~ 270 (471)
++..+..+++|++|+|++|.+++.. +..+..+++|++|++++|.+.... .+. .+..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 5667777888999999999887653 344667888888888887543221 111 135667777777777
Q ss_pred ccCCCC--CchhhhhCCCCCCCEEEecCCCCCCCCcccccC-CCCCCcccEEECCCCcCCCccccccccEEEcccccCc-
Q 041155 271 NNLSRS--TDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSN-LNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLR- 346 (471)
Q Consensus 271 n~l~~~--~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~-l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~- 346 (471)
|.+.+. ..++..+..+++|++|++++|.+++..+..+.. +..+ ..+.+.+.. .+|++|++++|+++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l--------~~~~~~~~~--~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--------AVNKKAKNA--PPLRSIICGRNRLEN 173 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH--------HHHHHHHTC--CCCCEEECCSSCCTG
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH--------hhhhhcccC--CCCcEEECCCCCCCc
Confidence 777653 113445666777777777777765433322221 1000 000000000 14555555555554
Q ss_pred cCcC---ccccCCCCCCEEeCcCCcCc--c---cCChhccCCCCCCEEeCcCCcCc----ccCcHHhhhccCCCCcCCcc
Q 041155 347 GSIP---VAFKHMVSLSFLGLASNEFE--G---GVPDFFANMCSLTMLNISDNKLR----GHFPELIQNLSSGCTKNSLE 414 (471)
Q Consensus 347 g~ip---~~l~~l~~L~~L~Ls~N~l~--g---~ip~~l~~l~~L~~L~Ls~N~l~----g~ip~~l~~l~~~~~~~~L~ 414 (471)
+.+| ..+..+++|++|++++|+++ | .+|..+..+++|++|+|++|.++ +.+|..+..++ +|+
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~------~L~ 247 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP------NLR 247 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT------TCC
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC------CcC
Confidence 3444 46778899999999999998 3 34547889999999999999997 67888888887 899
Q ss_pred EEEcccCcCccc----CCC-C--CCCCCCCEEECcCCcccc----cCchhh-hcCCCCCEEECcCCCCC
Q 041155 415 MLYLSSNEITGS----VPD-L--GGFSSLKELYLENNRLNG----FTNNSI-GQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 415 ~L~L~~N~l~g~----ip~-~--~~l~~L~~L~Ls~N~l~g----~ip~~l-~~l~~L~~L~Ls~N~l~ 471 (471)
+|+|++|.+++. +|. + +.+++|++|+|++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 999999999876 555 5 559999999999999998 588887 67999999999999875
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2.6e-24 Score=213.76 Aligned_cols=248 Identities=20% Similarity=0.181 Sum_probs=136.1
Q ss_pred CceEEEEeCCCCCCCCCcccccc----hhhhCCC-CCCEEeCCCCCCCCCCcCccCCCC-----CCCCeEeCCCCcccCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTIS----PALLQLH-RLTYLDLSLNNFSGSPIPEFIGSL-----TKLSYLDLSFAEFEGP 227 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~ip----~~l~~l~-~L~~L~Ls~n~l~g~~ip~~l~~l-----~~L~~L~Ls~n~l~g~ 227 (471)
.++++|++++ |.+++..+ ..+..++ +|++|+|++|.+++. .+..+..+ ++|++|+|++|.+++.
T Consensus 22 ~~L~~L~Ls~-----n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 22 HGVTSLDLSL-----NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TTCCEEECTT-----SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCceEEEccC-----CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 3467777776 45554444 5566666 677777777777654 44444443 6777777777777655
Q ss_pred CCcccc----CC-CCCCEEEccCCCCCCCCCh---hhhcC-CCCCcEEEcCCccCCCC--CchhhhhCCCC-CCCEEEec
Q 041155 228 IPSHLG----NL-SALQHLDLSLNHLFSVGNL---DWLSH-LSSLTYLDLGSNNLSRS--TDWLQVVGNLP-LLTTLYLY 295 (471)
Q Consensus 228 ip~~l~----~l-~~L~~L~L~~n~~~~~~~~---~~l~~-l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~-~L~~L~l~ 295 (471)
.+..+. .+ ++|++|++++|.+...+.. ..+.. .++|++|++++|.+++. ..++..+..++ +|++|+++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 555333 33 6777777777775443321 11333 24677777777776643 12233444454 67777777
Q ss_pred CCCCCCCCcccccCC-CCC-CcccEEECCCCcCCCccccccccEEEcccccCccCcCccccC-CCCCCEEeCcCCcCccc
Q 041155 296 RCHLPPIVPLSLSNL-NYS-TSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKH-MVSLSFLGLASNEFEGG 372 (471)
Q Consensus 296 ~n~l~g~~p~~l~~l-~~~-~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ 372 (471)
+|++++..+..++.. ..+ ++|++|++++|.+++... ..++..+.. .++|++|+|++|++++.
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---------------AELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---------------HHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---------------HHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 777766555433211 111 256666666665543111 023444444 34677777777777653
Q ss_pred CC----hhccCCCCCCEEeCcCCcCcccCcHHhhhccC-CCCcCCccEEEcccCcCccc
Q 041155 373 VP----DFFANMCSLTMLNISDNKLRGHFPELIQNLSS-GCTKNSLEMLYLSSNEITGS 426 (471)
Q Consensus 373 ip----~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~-~~~~~~L~~L~L~~N~l~g~ 426 (471)
.+ ..+..+++|+.|++++|.+.+..+..+..+.. ....++|++|++++|.+.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 23355566777777777755433332322211 11223577777777776654
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=9.6e-24 Score=205.10 Aligned_cols=230 Identities=20% Similarity=0.206 Sum_probs=160.0
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccC--CCCCCCCeEeCCCCcccCCCC----ccc
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFI--GSLTKLSYLDLSFAEFEGPIP----SHL 232 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l--~~l~~L~~L~Ls~n~l~g~ip----~~l 232 (471)
+++.+.+..+.+..+.+. .++. ...+++|++|++++|.+++. +|..+ .++++|++|++++|.+++.+| ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~-~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLV-GALR-VLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCCCBHHHHH-HHHH-HHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCcCCHHHHH-HHHH-hcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 466777777433322222 1122 23456799999999999886 78777 889999999999999987666 345
Q ss_pred cCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCch--hhhhCCCCCCCEEEecCCCCCCCC--cc-cc
Q 041155 233 GNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDW--LQVVGNLPLLTTLYLYRCHLPPIV--PL-SL 307 (471)
Q Consensus 233 ~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~l~~l~~L~~L~l~~n~l~g~~--p~-~l 307 (471)
..+++|++|++++|.+.... ...++.+++|++|++++|++.+...+ ...++.+++|++|++++|+++... +. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 67889999999999875443 24578889999999999988763111 123468889999999999987421 11 24
Q ss_pred cCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCC---CCCCEEeCcCCcCcccCChhccCCCCCC
Q 041155 308 SNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHM---VSLSFLGLASNEFEGGVPDFFANMCSLT 384 (471)
Q Consensus 308 ~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l---~~L~~L~Ls~N~l~g~ip~~l~~l~~L~ 384 (471)
+.+ ++|++|++++|++++.+ |..+..+ ++|++|+|++|+++ .+|..+. ++|+
T Consensus 221 ~~l---~~L~~L~Ls~N~l~~~~-------------------p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~ 275 (310)
T 4glp_A 221 AAG---VQPHSLDLSHNSLRATV-------------------NPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR 275 (310)
T ss_dssp HHT---CCCSSEECTTSCCCCCC-------------------CSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred hcC---CCCCEEECCCCCCCccc-------------------hhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence 566 78888888888777543 3344444 57777888888777 5676654 6778
Q ss_pred EEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcc
Q 041155 385 MLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITG 425 (471)
Q Consensus 385 ~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g 425 (471)
+|+|++|++++. |. +..++ +|+.|++++|.++.
T Consensus 276 ~L~Ls~N~l~~~-~~-~~~l~------~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 276 VLDLSSNRLNRA-PQ-PDELP------EVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSCCCCSC-CC-TTSCC------CCSCEECSSTTTSC
T ss_pred EEECCCCcCCCC-ch-hhhCC------CccEEECcCCCCCC
Confidence 888888887752 32 34444 77788888887763
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=8.9e-25 Score=214.50 Aligned_cols=265 Identities=19% Similarity=0.218 Sum_probs=177.2
Q ss_pred CCCcceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCC--CCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCC
Q 041155 145 RCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQL--HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFA 222 (471)
Q Consensus 145 ~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l--~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n 222 (471)
+.+|.++.+.. ..++.+++++ +.+. |..+..+ +++++|++++|.+++. .+. +.++++|++|++++|
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~ 103 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNS 103 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTC
T ss_pred HHHHHHHhcCc--hhheeecccc-----ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEccCC
Confidence 34577776542 3477899988 4554 4566667 8999999999999975 554 567999999999999
Q ss_pred cccCC-CCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCc-cCCCCCchhhhhCCCCCCCEEEecCC-CC
Q 041155 223 EFEGP-IPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN-NLSRSTDWLQVVGNLPLLTTLYLYRC-HL 299 (471)
Q Consensus 223 ~l~g~-ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~l~~n-~l 299 (471)
.+++. +|..+..+++|++|++++|.+.. ..+..++.+++|++|++++| .+++. .++..+..+++|++|++++| .+
T Consensus 104 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp EECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCCCCc
Confidence 99876 88889999999999999998532 22356788999999999999 56643 13456788999999999999 88
Q ss_pred CCC-CcccccCCCCCC-cccEEECCCC--cCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCc-CcccCC
Q 041155 300 PPI-VPLSLSNLNYST-SLQFLELSEN--NLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNE-FEGGVP 374 (471)
Q Consensus 300 ~g~-~p~~l~~l~~~~-~L~~L~Ls~N--~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip 374 (471)
++. ++..+..+ + +|++|++++| .++. +.+|..+..+++|++|++++|. +++..+
T Consensus 182 ~~~~~~~~~~~l---~~~L~~L~l~~~~~~~~~------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 182 TEKHVQVAVAHV---SETITQLNLSGYRKNLQK------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp CHHHHHHHHHHS---CTTCCEEECCSCGGGSCH------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred ChHHHHHHHHhc---ccCCCEEEeCCCcccCCH------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 864 56667777 7 8999999888 4441 2334444555556666666655 454555
Q ss_pred hhccCCCCCCEEeCcCCc-CcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC--CCCC-CCCCEEECcCCcccccC
Q 041155 375 DFFANMCSLTMLNISDNK-LRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD--LGGF-SSLKELYLENNRLNGFT 450 (471)
Q Consensus 375 ~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~--~~~l-~~L~~L~Ls~N~l~g~i 450 (471)
..+..+++|++|++++|. +.......++.++ +|++|++++| ++. +..+ ..++.|++++|++++..
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIP------TLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT------TCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC------CCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCcccc
Confidence 555555666666666553 2221112334443 5666666555 222 2222 22444455666666655
Q ss_pred chhhh
Q 041155 451 NNSIG 455 (471)
Q Consensus 451 p~~l~ 455 (471)
|..++
T Consensus 310 ~~~~~ 314 (336)
T 2ast_B 310 RPTIG 314 (336)
T ss_dssp CSSCS
T ss_pred CCccc
Confidence 55443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=6e-24 Score=206.53 Aligned_cols=234 Identities=21% Similarity=0.188 Sum_probs=122.8
Q ss_pred CCCCEEeCCCCCCCCCCcCcc--CCCCCCCCeEeCCCCcccCCCCccc--cCCCCCCEEEccCCCCCCCCChhhhcCCCC
Q 041155 187 HRLTYLDLSLNNFSGSPIPEF--IGSLTKLSYLDLSFAEFEGPIPSHL--GNLSALQHLDLSLNHLFSVGNLDWLSHLSS 262 (471)
Q Consensus 187 ~~L~~L~Ls~n~l~g~~ip~~--l~~l~~L~~L~Ls~n~l~g~ip~~l--~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~ 262 (471)
..++.+.+.++.++...+... +..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+.....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 346777777766643211111 1124567888888888777777766 666667777776666432211
Q ss_pred CcEEEcCCccCCCCCch-hhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcc
Q 041155 263 LTYLDLGSNNLSRSTDW-LQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLD 341 (471)
Q Consensus 263 L~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls 341 (471)
.. ...+..+++|++|++++|++.+..|..++.+ ++|++|++++|++.+....
T Consensus 135 ---------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~--------- 187 (310)
T 4glp_A 135 ---------------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF---PALTSLDLSDNPGLGERGL--------- 187 (310)
T ss_dssp ---------------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC---TTCCEEECCSCTTCHHHHH---------
T ss_pred ---------------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC---CCCCEEECCCCCCccchhh---------
Confidence 00 0123355566666666666655555555555 6666666666655431000
Q ss_pred cccCccCcCccccCCCCCCEEeCcCCcCcccCCh----hccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEE
Q 041155 342 SNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPD----FFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLY 417 (471)
Q Consensus 342 ~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~ 417 (471)
..+..++.+++|++|++++|+++. +|. .++.+++|++|+|++|++++.+|..+..+. ..++|++|+
T Consensus 188 ------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~---~~~~L~~L~ 257 (310)
T 4glp_A 188 ------MAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM---WSSALNSLN 257 (310)
T ss_dssp ------HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC---CCTTCCCEE
T ss_pred ------hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc---CcCcCCEEE
Confidence 001112344555555555555541 222 134455556666666665555454444331 012566666
Q ss_pred cccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 418 LSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 418 L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
+++|+++ .+|. +. ++|++|++++|++++. |. +..+++|+.|+|++|+|+
T Consensus 258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 258 LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6666665 4444 32 5666666666666653 21 345566666666666653
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1e-21 Score=190.61 Aligned_cols=189 Identities=25% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcE
Q 041155 186 LHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTY 265 (471)
Q Consensus 186 l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 265 (471)
+++|++|++++|.++. +| .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+... ..+..+++|++
T Consensus 40 l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV---SAIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC---GGGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc---hhhcCCCCCCE
Confidence 3444444444444442 23 23444444444444444442 222 44444444444444443322 12444444555
Q ss_pred EEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc---cccEEEccc
Q 041155 266 LDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY---NLVLLGLDS 342 (471)
Q Consensus 266 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~---~L~~L~Ls~ 342 (471)
|++++|.+++.+ .+..+++|++|++++|.+++..+ ++.+ ++|+.|++++|.+++..+-. +|+.|++++
T Consensus 112 L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 112 LDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGL---TNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182 (308)
T ss_dssp EECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred EECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCC---CCccEEEccCCcCCCChhhcCCCCCCEEECCC
Confidence 555555444432 24444555555555554444322 3333 44444444444443211100 122222222
Q ss_pred ccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcc
Q 041155 343 NLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG 395 (471)
Q Consensus 343 n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 395 (471)
|.+++ ++. +..+++|++|++++|++++.. .+..+++|+.|++++|.+++
T Consensus 183 n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 183 NKISD-ISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SCCCC-CGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CccCc-Chh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 22222 111 455666666666666666432 25566666666666666653
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.2e-23 Score=204.57 Aligned_cols=248 Identities=23% Similarity=0.243 Sum_probs=186.5
Q ss_pred CCCCEEeCCCCCCCCCCcCccCCCC--CCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCc
Q 041155 187 HRLTYLDLSLNNFSGSPIPEFIGSL--TKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLT 264 (471)
Q Consensus 187 ~~L~~L~Ls~n~l~g~~ip~~l~~l--~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 264 (471)
..++.++++++.+. |..+..+ +++++|++++|.+++..|. +.++++|++|++++|.+........+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34789999998876 3455666 8899999999999876655 667899999999988754322334577888888
Q ss_pred EEEcCCccCCCCCchhhhhCCCCCCCEEEecCC-CCCCC-CcccccCCCCCCcccEEECCCC-cCCCccccccccEEEcc
Q 041155 265 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRC-HLPPI-VPLSLSNLNYSTSLQFLELSEN-NLTNSIYPYNLVLLGLD 341 (471)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n-~l~g~-~p~~l~~l~~~~~L~~L~Ls~N-~l~g~ip~~~L~~L~Ls 341 (471)
+|++++|.+++. .+..++.+++|++|++++| .+++. ++..+..+ ++|++|++++| .+++.
T Consensus 122 ~L~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~---~~L~~L~l~~~~~l~~~------------ 184 (336)
T 2ast_B 122 NLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC---SRLDELNLSWCFDFTEK------------ 184 (336)
T ss_dssp EEECTTCBCCHH--HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC---TTCCEEECCCCTTCCHH------------
T ss_pred EEeCcCcccCHH--HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC---CCCCEEcCCCCCCcChH------------
Confidence 888888887654 3457778888888888888 56652 55556666 77777777777 65531
Q ss_pred cccCccCcCccccCCC-CCCEEeCcCC--cCc-ccCChhccCCCCCCEEeCcCCc-CcccCcHHhhhccCCCCcCCccEE
Q 041155 342 SNLLRGSIPVAFKHMV-SLSFLGLASN--EFE-GGVPDFFANMCSLTMLNISDNK-LRGHFPELIQNLSSGCTKNSLEML 416 (471)
Q Consensus 342 ~n~l~g~ip~~l~~l~-~L~~L~Ls~N--~l~-g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l~~~~~~~~L~~L 416 (471)
.++..+..++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+..++ +|++|
T Consensus 185 ------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~------~L~~L 252 (336)
T 2ast_B 185 ------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN------YLQHL 252 (336)
T ss_dssp ------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT------TCCEE
T ss_pred ------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC------CCCEe
Confidence 2566678889 9999999999 566 5678888899999999999999 8888888888887 89999
Q ss_pred EcccCc-CcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCCC
Q 041155 417 YLSSNE-ITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 417 ~L~~N~-l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
++++|. +...... ++++++|++|++++| ++...-..+. ..++.|++++|+++
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 306 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSC
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCc
Confidence 999995 3322222 788999999999999 5443322332 23556668888874
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.8e-21 Score=188.81 Aligned_cols=205 Identities=22% Similarity=0.301 Sum_probs=150.3
Q ss_pred EeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCc
Q 041155 192 LDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN 271 (471)
Q Consensus 192 L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n 271 (471)
+.+..+.+++. + ...++++|++|++++|.++ .+| .+..+++|++|++++|.+...+. +..+++|++|++++|
T Consensus 24 ~~l~~~~~~~~-~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 24 IAAGKSNVTDT-V--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN 95 (308)
T ss_dssp HHTTCSSTTSE-E--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC
T ss_pred HHhCCCCcCce-e--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCC
Confidence 34555555542 2 2346889999999999998 466 68899999999999999766543 889999999999999
Q ss_pred cCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc---cccEEEcccccCccC
Q 041155 272 NLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY---NLVLLGLDSNLLRGS 348 (471)
Q Consensus 272 ~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ 348 (471)
.+.+.+ .+..+++|++|++++|++++. +. +..+ ++|++|++++|.+++..+-. +|++|++++|.+++.
T Consensus 96 ~l~~~~----~~~~l~~L~~L~l~~n~l~~~-~~-l~~l---~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 96 PLKNVS----AIAGLQSIKTLDLTSTQITDV-TP-LAGL---SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp CCSCCG----GGTTCTTCCEEECTTSCCCCC-GG-GTTC---TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred cCCCch----hhcCCCCCCEEECCCCCCCCc-hh-hcCC---CCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC
Confidence 998863 688999999999999999884 32 6777 89999999999988644321 667777777776643
Q ss_pred cCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcc
Q 041155 349 IPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITG 425 (471)
Q Consensus 349 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g 425 (471)
+. +..+++|++|++++|++++ ++. +..+++|++|++++|++++..| +..++ +|++|++++|.+++
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~------~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTS------NLFIVTLTNQTITN 231 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCT------TCCEEEEEEEEEEC
T ss_pred -hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcccc--ccCCC------CCCEEEccCCeeec
Confidence 22 6666777777777777764 332 5666677777777777764332 45554 67777777776654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.2e-21 Score=180.60 Aligned_cols=179 Identities=23% Similarity=0.255 Sum_probs=127.6
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcc
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSL 316 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L 316 (471)
..++++++++.+...+. .+ .++++.|++++|.+.+.+ +..++.+++|++|++++|.+++..|..+..+ ++|
T Consensus 15 ~~~~l~~~~~~l~~~p~--~~--~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L 85 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS--GI--PADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TEL 85 (251)
T ss_dssp GGTEEECTTCCCSSCCS--CC--CTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---TTC
T ss_pred CCeEEecCCCCccccCC--CC--CCCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcCCccCHhHhccC---CcC
Confidence 45667777766554441 12 246677777777766653 2356666777777777777766666556655 566
Q ss_pred cEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCccc
Q 041155 317 QFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGH 396 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 396 (471)
++|++++|.++ +..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++.
T Consensus 86 ~~L~L~~n~l~-------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 86 GTLGLANNQLA-------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp CEEECTTSCCC-------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCccc-------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 66666655554 34445677888899999999988865566678888899999999988866
Q ss_pred CcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCccccc
Q 041155 397 FPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGF 449 (471)
Q Consensus 397 ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ 449 (471)
.+..+..++ +|++|+|++|++++..+. +..+++|++|++++|.+++.
T Consensus 147 ~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLT------NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCc------CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 665677776 788899998888877776 88888888999998888876
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7.3e-21 Score=178.98 Aligned_cols=191 Identities=23% Similarity=0.302 Sum_probs=112.1
Q ss_pred CCCcceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcc
Q 041155 145 RCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEF 224 (471)
Q Consensus 145 ~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l 224 (471)
|+.|.|..|.. ..+.+++++ +.++ .+|..+. +.+++|++++|.+++. .|..+.++++|++|+|++|.+
T Consensus 4 Cp~~~gC~C~~---~~~~l~~~~-----~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 4 CETVTGCTCNE---GKKEVDCQG-----KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp CHHHHSSEEEG---GGTEEECTT-----CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCceEcCC---CCeEEecCC-----CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcC
Confidence 45677777742 345667776 3444 4555443 4677777777777764 566677777777777777777
Q ss_pred cCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc
Q 041155 225 EGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP 304 (471)
Q Consensus 225 ~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p 304 (471)
++..|..+.++++|++|++++|++...+. . .+..+++|++|++++|++++..+
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~--------------------------~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLASLPL-G--------------------------VFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCT-T--------------------------TTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCHhHhccCCcCCEEECCCCcccccCh-h--------------------------HhcccCCCCEEEcCCCcCCCcCh
Confidence 76655566666666666666666443321 2 33444445555555555444333
Q ss_pred ccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCC
Q 041155 305 LSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLT 384 (471)
Q Consensus 305 ~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~ 384 (471)
..+..+ ++|++|++++|++++ ..+..++.+++|++|+|++|++++..+..+..+++|+
T Consensus 125 ~~~~~l---~~L~~L~Ls~N~l~~-------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 125 GVFDRL---TKLKELRLNTNQLQS-------------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TTTTTC---TTCCEEECCSSCCCC-------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hHhccC---CcccEEECcCCcCCc-------------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 334444 455555555544442 2223455566666666666666655555566666666
Q ss_pred EEeCcCCcCccc
Q 041155 385 MLNISDNKLRGH 396 (471)
Q Consensus 385 ~L~Ls~N~l~g~ 396 (471)
.|++++|.+++.
T Consensus 183 ~L~l~~N~~~c~ 194 (251)
T 3m19_A 183 TITLFGNQFDCS 194 (251)
T ss_dssp EEECCSCCBCTT
T ss_pred EEEeeCCceeCC
Confidence 666666666654
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.7e-24 Score=228.76 Aligned_cols=296 Identities=12% Similarity=0.115 Sum_probs=169.9
Q ss_pred eEEEEeCCCCCCCCCcc-cccchhhhCCCCCCEEeCCCCCCCCCC---cCccCCCCCCCCeEeCCCCccc----CCCCcc
Q 041155 160 VIKLEIQPIDFGSFPLR-GTISPALLQLHRLTYLDLSLNNFSGSP---IPEFIGSLTKLSYLDLSFAEFE----GPIPSH 231 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~-g~ip~~l~~l~~L~~L~Ls~n~l~g~~---ip~~l~~l~~L~~L~Ls~n~l~----g~ip~~ 231 (471)
+++|+++++. .++ ..++....++++|++|+|++|.+++.. ++..+.++++|++|++++|.++ +.++..
T Consensus 140 L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~ 215 (592)
T 3ogk_B 140 LETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215 (592)
T ss_dssp CCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH
T ss_pred CcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH
Confidence 6666666531 121 123333446777777777777765432 3334456677777777777776 234444
Q ss_pred ccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCC-CCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCC
Q 041155 232 LGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLS-RSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNL 310 (471)
Q Consensus 232 l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l 310 (471)
+.++++|++|++++|.+... +..+.++++|++|+++..... ........+..+++|+.|+++++ ..+.+|..+..+
T Consensus 216 ~~~~~~L~~L~L~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~ 292 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFA 292 (592)
T ss_dssp HHHCTTCCEEECSSCBGGGG--HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGG
T ss_pred HhhCCCCcEEeccCccHHHH--HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhc
Confidence 55677777777777764332 244566666666666542111 00111123333444444444432 122233333334
Q ss_pred CCCCcccEEECCCCcCCCccc-------------------------c-----ccccEEEcc-----------cccCccC-
Q 041155 311 NYSTSLQFLELSENNLTNSIY-------------------------P-----YNLVLLGLD-----------SNLLRGS- 348 (471)
Q Consensus 311 ~~~~~L~~L~Ls~N~l~g~ip-------------------------~-----~~L~~L~Ls-----------~n~l~g~- 348 (471)
++|++|++++|.+++... . .+|++|+++ .|.+++.
T Consensus 293 ---~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 293 ---AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp ---GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred ---CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 455555555555433221 1 056666666 2444433
Q ss_pred cCccccCCCCCCEEeCcCCcCcccCChhccC-CCCCCEEeCc----CCcCccc-----CcHHhhhccCCCCcCCccEEEc
Q 041155 349 IPVAFKHMVSLSFLGLASNEFEGGVPDFFAN-MCSLTMLNIS----DNKLRGH-----FPELIQNLSSGCTKNSLEMLYL 418 (471)
Q Consensus 349 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-l~~L~~L~Ls----~N~l~g~-----ip~~l~~l~~~~~~~~L~~L~L 418 (471)
++.....+++|++|+++.|++++..+..+.. +++|+.|+++ .|++++. ++..+..++ +|++|++
T Consensus 370 ~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~------~L~~L~L 443 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK------KLRRFAF 443 (592)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT------TCCEEEE
T ss_pred HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC------CCCEEEE
Confidence 2222344667777777777776666655554 6777777775 5666653 444455555 7888888
Q ss_pred ccCc--CcccCCC-C-CCCCCCCEEECcCCcccc-cCchhhhcCCCCCEEECcCCCCC
Q 041155 419 SSNE--ITGSVPD-L-GGFSSLKELYLENNRLNG-FTNNSIGQMSKLRTLSLNGNSLR 471 (471)
Q Consensus 419 ~~N~--l~g~ip~-~-~~l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~ 471 (471)
++|. +++..+. + ..+++|++|++++|++++ .++..+..+++|++|+|++|+++
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 6433 5555444 3 348889999999999987 44556688999999999999863
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=5.6e-21 Score=199.44 Aligned_cols=200 Identities=22% Similarity=0.324 Sum_probs=151.9
Q ss_pred Cccee-eeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCccc
Q 041155 147 KWAGV-GCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFE 225 (471)
Q Consensus 147 ~~~g~-~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~ 225 (471)
.|.++ .|.. .+++.|++++ |.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|++++|.++
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~-----n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNR-----LNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCS-----SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCS
T ss_pred hhhhcccccc--CCccEEEeCC-----CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCC
Confidence 46666 5642 4688899988 56765 77765 378999999999998 377 45789999999999998
Q ss_pred CCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcc
Q 041155 226 GPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPL 305 (471)
Q Consensus 226 g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~ 305 (471)
+ +|. +.+ +|++|++++|.+...+. .+++|++|++++|.+++.+. .+++|++|++++|++++ +|.
T Consensus 114 ~-ip~-l~~--~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 114 T-LPE-LPA--SLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp C-CCC-CCT--TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC
T ss_pred C-cch-hhc--CCCEEECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCC-cch
Confidence 6 887 665 89999999998766542 57888888888888887542 56788888888888887 555
Q ss_pred cccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccC-----CCCCCEEeCcCCcCcccCChhccCC
Q 041155 306 SLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKH-----MVSLSFLGLASNEFEGGVPDFFANM 380 (471)
Q Consensus 306 ~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g~ip~~l~~l 380 (471)
+. ++|+.|++++|.++ .+|. +.. .+.|+.|+|++|+++ .+|..+..+
T Consensus 178 -l~-----~~L~~L~Ls~N~L~--------------------~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 178 -LP-----ESLEALDVSTNLLE--------------------SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp -CC-----TTCCEEECCSSCCS--------------------SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred -hh-----CCCCEEECcCCCCC--------------------chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 33 56777777777666 3443 332 122389999999998 688888889
Q ss_pred CCCCEEeCcCCcCcccCcHHhhhcc
Q 041155 381 CSLTMLNISDNKLRGHFPELIQNLS 405 (471)
Q Consensus 381 ~~L~~L~Ls~N~l~g~ip~~l~~l~ 405 (471)
++|+.|+|++|.+++.+|..+..+.
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9999999999999999998888765
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=6.1e-21 Score=174.13 Aligned_cols=185 Identities=25% Similarity=0.294 Sum_probs=142.3
Q ss_pred CCCCcceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCc
Q 041155 144 DRCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE 223 (471)
Q Consensus 144 ~~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~ 223 (471)
..|.|.++.|.. +.++ .+|..+ .++|++|++++|.+++. .+..++++++|++|++++|+
T Consensus 5 C~C~~~~v~c~~-----------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 5 CSCSGTTVECYS-----------------QGRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp CEEETTEEECCS-----------------SCCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CEECCCEEEecC-----------------CCcc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCc
Confidence 346788777743 2333 345433 45899999999999964 55668899999999999999
Q ss_pred ccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCC
Q 041155 224 FEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIV 303 (471)
Q Consensus 224 l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~ 303 (471)
+++..+..+..+++|++|++++|.+...+. ..+.++++|++|++++|.+++.+. ..+..+++|++|++++|.+++..
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeC
Confidence 996555567899999999999999765442 347889999999999999988742 45788999999999999999877
Q ss_pred cccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCC
Q 041155 304 PLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMV 357 (471)
Q Consensus 304 p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~ 357 (471)
+..+..+ ++|++|++++|.+.+..| ++++|+++.|+++|.+|.+++.++
T Consensus 141 ~~~~~~l---~~L~~L~l~~N~~~~~~~--~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 141 DGVFDRL---TSLQYIWLHDNPWDCTCP--GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTTTC---TTCCEEECCSCCBCCCTT--TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHhccC---CCccEEEecCCCeecCCC--CHHHHHHHHHhCCceeeccCcccc
Confidence 7667777 899999999998876554 456666666666666666655443
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.3e-21 Score=180.89 Aligned_cols=201 Identities=21% Similarity=0.312 Sum_probs=116.2
Q ss_pred cCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCC-CCCCCChhhhcCCCCCcEEEcCC-ccCCCCCchhh
Q 041155 204 IPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNH-LFSVGNLDWLSHLSSLTYLDLGS-NNLSRSTDWLQ 281 (471)
Q Consensus 204 ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~ 281 (471)
+|. +. ++|++|++++|++++..+..+.++++|++|++++|+ +...+. ..+.++++|++|++++ |.+++.
T Consensus 26 ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i----- 96 (239)
T 2xwt_C 26 IPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYI----- 96 (239)
T ss_dssp CCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEE-----
T ss_pred cCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEc-----
Confidence 665 33 377788888877775444466667777777777765 433221 1244455555555554 444433
Q ss_pred hhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCC-
Q 041155 282 VVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLS- 360 (471)
Q Consensus 282 ~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~- 360 (471)
.+..+..+ ++|++|++++|.+++ +|. +..+++|+
T Consensus 97 ---------------------~~~~f~~l---~~L~~L~l~~n~l~~--------------------lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 97 ---------------------DPDALKEL---PLLKFLGIFNTGLKM--------------------FPD-LTKVYSTDI 131 (239)
T ss_dssp ---------------------CTTSEECC---TTCCEEEEEEECCCS--------------------CCC-CTTCCBCCS
T ss_pred ---------------------CHHHhCCC---CCCCEEeCCCCCCcc--------------------ccc-ccccccccc
Confidence 33334444 444444444443331 222 34444444
Q ss_pred --EEeCcCC-cCcccCChhccCCCCCC-EEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCc-CcccCCC-CCCC-
Q 041155 361 --FLGLASN-EFEGGVPDFFANMCSLT-MLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNE-ITGSVPD-LGGF- 433 (471)
Q Consensus 361 --~L~Ls~N-~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~-l~g~ip~-~~~l- 433 (471)
+|++++| ++++..+..+..+++|+ .|++++|+++ .+|......+ +|++|++++|+ +++..+. +..+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~------~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT------KLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC------EEEEEECTTCTTCCEECTTTTTTCS
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC------CCCEEEcCCCCCcccCCHHHhhccc
Confidence 6666666 56544444566666676 7777777666 4554433323 67777777774 7755555 7777
Q ss_pred CCCCEEECcCCcccccCchhhhcCCCCCEEECcCC
Q 041155 434 SSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGN 468 (471)
Q Consensus 434 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 468 (471)
++|++|++++|++++. |.. .+++|+.|+++++
T Consensus 205 ~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp BCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred cCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 7888888888888743 433 5677788887765
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.6e-21 Score=179.65 Aligned_cols=203 Identities=19% Similarity=0.188 Sum_probs=147.4
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCc-ccCCCCccccCCCCCCEEEccC-CCCCCCCChh
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAE-FEGPIPSHLGNLSALQHLDLSL-NHLFSVGNLD 255 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~-l~g~ip~~l~~l~~L~~L~L~~-n~~~~~~~~~ 255 (471)
.+|. +. ++|++|++++|.+++. .+..++++++|++|++++|. +++..+..+.++++|++|++++ |.+...+ ..
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~ 99 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PD 99 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TT
T ss_pred ccCC-CC--CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HH
Confidence 4565 32 3899999999999864 45578899999999999997 7754445788999999999998 8865443 23
Q ss_pred hhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCC---EEEecCC-CCCCCCcccccCCCCCCccc-EEECCCCcCCCcc
Q 041155 256 WLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLT---TLYLYRC-HLPPIVPLSLSNLNYSTSLQ-FLELSENNLTNSI 330 (471)
Q Consensus 256 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~---~L~l~~n-~l~g~~p~~l~~l~~~~~L~-~L~Ls~N~l~g~i 330 (471)
.+.++++|++|++++|.+++.+. ++.+++|+ +|++++| .+++..+..+..+ ++|+ .|++++|.++ .+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l---~~L~~~L~l~~n~l~-~i 171 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---CNETLTLKLYNNGFT-SV 171 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT---BSSEEEEECCSCCCC-EE
T ss_pred HhCCCCCCCEEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccch---hcceeEEEcCCCCCc-cc
Confidence 47889999999999999988642 67778887 9999999 8888766677777 8888 8888888776 33
Q ss_pred ccccccEEEcccccCccCcCccccCCCCCCEEeCcCCc-CcccCChhccCC-CCCCEEeCcCCcCcccCcHHhhhccCCC
Q 041155 331 YPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNE-FEGGVPDFFANM-CSLTMLNISDNKLRGHFPELIQNLSSGC 408 (471)
Q Consensus 331 p~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~l~~~~ 408 (471)
| ......++|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .++
T Consensus 172 ~-------------------~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~--- 226 (239)
T 2xwt_C 172 Q-------------------GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLE--- 226 (239)
T ss_dssp C-------------------TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCT---
T ss_pred C-------------------HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--Hhc---
Confidence 3 222222566777777773 664444556666 677777777777763 4432 233
Q ss_pred CcCCccEEEcccC
Q 041155 409 TKNSLEMLYLSSN 421 (471)
Q Consensus 409 ~~~~L~~L~L~~N 421 (471)
+|+.|+++++
T Consensus 227 ---~L~~L~l~~~ 236 (239)
T 2xwt_C 227 ---HLKELIARNT 236 (239)
T ss_dssp ---TCSEEECTTC
T ss_pred ---cCceeeccCc
Confidence 6667766654
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=6.5e-23 Score=216.68 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=176.2
Q ss_pred CceEEEEeCCCCCCCCCcccc-cchhhhCCCCCCEEeCCCCCCCCCC---cCccCCCCCCCCeEeCCCCc--ccCC-CCc
Q 041155 158 GHVIKLEIQPIDFGSFPLRGT-ISPALLQLHRLTYLDLSLNNFSGSP---IPEFIGSLTKLSYLDLSFAE--FEGP-IPS 230 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~-ip~~l~~l~~L~~L~Ls~n~l~g~~---ip~~l~~l~~L~~L~Ls~n~--l~g~-ip~ 230 (471)
+++++|+++++ ..++.. ++..+.++++|++|++++|.+++.. ++.....+++|++|++++|. ++.. ++.
T Consensus 130 ~~L~~L~L~~~----~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 130 KNFKVLVLSSC----EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp TTCCEEEEESC----EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred CCCcEEeCCCc----CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 46777777763 133332 4444457778888888877766531 22233366778888888775 2111 111
Q ss_pred cccCCCCCCEEEccCCCCCCCCChhhh-----------------------------------------------------
Q 041155 231 HLGNLSALQHLDLSLNHLFSVGNLDWL----------------------------------------------------- 257 (471)
Q Consensus 231 ~l~~l~~L~~L~L~~n~~~~~~~~~~l----------------------------------------------------- 257 (471)
.+.++++|++|++++|..... ....+
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~ 284 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred HHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence 224467777777777620000 00011
Q ss_pred -cCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCC-CcccccCCCCCCcccEEECC---------CCcC
Q 041155 258 -SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPI-VPLSLSNLNYSTSLQFLELS---------ENNL 326 (471)
Q Consensus 258 -~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~-~p~~l~~l~~~~~L~~L~Ls---------~N~l 326 (471)
..+++|++|++++|.+++.. +...+..+++|++|++++| +... ++.....+ ++|+.|+++ .+.+
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~---~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC---KDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC---TTCCEEEEECSCTTCSSCSSCC
T ss_pred HHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC---CCCCEEEEecCcccccccCCCC
Confidence 13455666666665543321 1223455666666666655 2211 11111224 667777662 2334
Q ss_pred CCcccc------ccccEEEcccccCccCcCcccc-CCCCCCEEeCc--C----CcCcc-----cCChhccCCCCCCEEeC
Q 041155 327 TNSIYP------YNLVLLGLDSNLLRGSIPVAFK-HMVSLSFLGLA--S----NEFEG-----GVPDFFANMCSLTMLNI 388 (471)
Q Consensus 327 ~g~ip~------~~L~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls--~----N~l~g-----~ip~~l~~l~~L~~L~L 388 (471)
++.... .+|++|+++.|.+++..+..+. .+++|++|+++ + +.+++ .++..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 332111 1677777777777766555554 47788888888 3 45552 22333566788888888
Q ss_pred cCCcCcccCcHHhhh-ccCCCCcCCccEEEcccCcCcccCCC-C-CCCCCCCEEECcCCcccccCch-hhhcCCCCCEEE
Q 041155 389 SDNKLRGHFPELIQN-LSSGCTKNSLEMLYLSSNEITGSVPD-L-GGFSSLKELYLENNRLNGFTNN-SIGQMSKLRTLS 464 (471)
Q Consensus 389 s~N~l~g~ip~~l~~-l~~~~~~~~L~~L~L~~N~l~g~ip~-~-~~l~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~ 464 (471)
++ .+++..+..++. ++ +|++|++++|.+++..+. + ..+++|++|++++|.+++..+. .+..+++|++|+
T Consensus 440 ~~-~l~~~~~~~l~~~~~------~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAK------KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CS-SCCHHHHHHHHHHCT------TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred cC-cccHHHHHHHHHhch------hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 76 677666666665 55 899999999998776554 3 6789999999999999765544 345688999999
Q ss_pred CcCCCC
Q 041155 465 LNGNSL 470 (471)
Q Consensus 465 Ls~N~l 470 (471)
+++|++
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 999976
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.3e-20 Score=182.47 Aligned_cols=194 Identities=17% Similarity=0.157 Sum_probs=120.2
Q ss_pred EEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCc-cCCCCCCCCeEeCCCCcccCCCCc-cccCCCCCC
Q 041155 162 KLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPE-FIGSLTKLSYLDLSFAEFEGPIPS-HLGNLSALQ 239 (471)
Q Consensus 162 ~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~-~l~~l~~L~~L~Ls~n~l~g~ip~-~l~~l~~L~ 239 (471)
.++-++ ++++ +||..+ .+++++|+|++|+++. +|. .|.++++|++|+|++|++.+.+|. .|.++++++
T Consensus 13 ~v~C~~-----~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 13 VFLCQE-----SKVT-EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp EEEEES-----TTCC-SCCTTC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred EEEecC-----CCCC-ccCcCc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 455555 4566 677765 3678999999999884 554 688899999999999988777765 467788776
Q ss_pred E-EEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCC-CCCCCCcccccCCCCCCccc
Q 041155 240 H-LDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRC-HLPPIVPLSLSNLNYSTSLQ 317 (471)
Q Consensus 240 ~-L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n-~l~g~~p~~l~~l~~~~~L~ 317 (471)
+ +.+..|++...+. ..+..+++|++|++++|++...+. ..+....++..+++.++ ++....+..+..+. ..++
T Consensus 83 ~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--~~l~ 157 (350)
T 4ay9_X 83 EIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESV 157 (350)
T ss_dssp EEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--SSCE
T ss_pred hhhcccCCcccccCc-hhhhhccccccccccccccccCCc--hhhcccchhhhhhhccccccccccccchhhcc--hhhh
Confidence 5 5556677554432 447788888888888888877643 23445556777777654 44443333444431 3566
Q ss_pred EEECCCCcCCCccccc----cccEEEcccccCccCcCc-cccCCCCCCEEeCcCCcCc
Q 041155 318 FLELSENNLTNSIYPY----NLVLLGLDSNLLRGSIPV-AFKHMVSLSFLGLASNEFE 370 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~----~L~~L~Ls~n~l~g~ip~-~l~~l~~L~~L~Ls~N~l~ 370 (471)
.|++++|+++...+.. +++.+++++++..+.+|. .|..+++|++|+|++|+++
T Consensus 158 ~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 7777777766322111 455555543322233432 3455555555555555555
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.1e-19 Score=189.58 Aligned_cols=187 Identities=25% Similarity=0.354 Sum_probs=136.0
Q ss_pred CCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEE
Q 041155 187 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYL 266 (471)
Q Consensus 187 ~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 266 (471)
.+|++|++++|.+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|.+...+. +.+ +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~---l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE---LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC--CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC---CCT--TCCEE
T ss_pred CCccEEEeCCCCCCc--cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch---hhc--CCCEE
Confidence 389999999999985 777663 78999999999998 788 457888888888888766442 333 78888
Q ss_pred EcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCc
Q 041155 267 DLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLR 346 (471)
Q Consensus 267 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~ 346 (471)
++++|.+++.+ . .+++|++|++++|.+++ +|. .+ ++|+.|++++|.++
T Consensus 126 ~Ls~N~l~~lp---~---~l~~L~~L~Ls~N~l~~-lp~---~l---~~L~~L~Ls~N~L~------------------- 173 (571)
T 3cvr_A 126 DVDNNQLTMLP---E---LPALLEYINADNNQLTM-LPE---LP---TSLEVLSVRNNQLT------------------- 173 (571)
T ss_dssp ECCSSCCSCCC---C---CCTTCCEEECCSSCCSC-CCC---CC---TTCCEEECCSSCCS-------------------
T ss_pred ECCCCcCCCCC---C---cCccccEEeCCCCccCc-CCC---cC---CCcCEEECCCCCCC-------------------
Confidence 88888777753 2 56777777777777776 443 23 55666666666554
Q ss_pred cCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCC-------CEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcc
Q 041155 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSL-------TMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLS 419 (471)
Q Consensus 347 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~ 419 (471)
+ +|. +. ++|++|+|++|+++ .+|. +.. +| +.|+|++|+|+ .+|..+..++ +|+.|+|+
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~------~L~~L~L~ 238 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD------PTCTIILE 238 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC------TTEEEECC
T ss_pred C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC------CCCEEEee
Confidence 2 555 44 78889999999888 6777 544 66 88888888888 5787777776 78888888
Q ss_pred cCcCcccCCC-CCCC
Q 041155 420 SNEITGSVPD-LGGF 433 (471)
Q Consensus 420 ~N~l~g~ip~-~~~l 433 (471)
+|.+++.+|. ++.+
T Consensus 239 ~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSSCCHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHh
Confidence 8888887776 5443
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.8e-22 Score=213.39 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=162.1
Q ss_pred cCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecC---------CCCCCCC
Q 041155 233 GNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYR---------CHLPPIV 303 (471)
Q Consensus 233 ~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~---------n~l~g~~ 303 (471)
..+++|++|++++|.+........+.++++|++|++++| +... .+......+++|++|++++ +.+++..
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~-~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH-HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH-HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 357889999999988433222234678999999999988 4322 1233344689999999954 3444332
Q ss_pred ccccc-CCCCCCcccEEECCCCcCCCcccc------ccccEEEcc--c----ccCcc-----CcCccccCCCCCCEEeCc
Q 041155 304 PLSLS-NLNYSTSLQFLELSENNLTNSIYP------YNLVLLGLD--S----NLLRG-----SIPVAFKHMVSLSFLGLA 365 (471)
Q Consensus 304 p~~l~-~l~~~~~L~~L~Ls~N~l~g~ip~------~~L~~L~Ls--~----n~l~g-----~ip~~l~~l~~L~~L~Ls 365 (471)
...+. .+ ++|+.|++..|.+++..+. .+|+.|+++ + +.+++ .++..+..+++|++|+++
T Consensus 364 l~~l~~~~---~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 364 LVSVSMGC---PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHC---TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHhc---hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 22333 35 8899999999998875433 189999999 4 55652 233346788999999998
Q ss_pred CCcCcccCChhccC-CCCCCEEeCcCCcCcccCcHHh-hhccCCCCcCCccEEEcccCcCcccCCC--CCCCCCCCEEEC
Q 041155 366 SNEFEGGVPDFFAN-MCSLTMLNISDNKLRGHFPELI-QNLSSGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYL 441 (471)
Q Consensus 366 ~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~~l-~~l~~~~~~~~L~~L~L~~N~l~g~ip~--~~~l~~L~~L~L 441 (471)
+ .+++..+..+.. +++|+.|++++|.+++..+..+ ..++ +|++|++++|.+++..+. +..+++|++|++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD------SLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT------TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC------CcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 7 777766666665 8999999999999987766665 5566 899999999999765543 566899999999
Q ss_pred cCCcccccCchhh-hcCCCCCEEECcCC
Q 041155 442 ENNRLNGFTNNSI-GQMSKLRTLSLNGN 468 (471)
Q Consensus 442 s~N~l~g~ip~~l-~~l~~L~~L~Ls~N 468 (471)
++|.++......+ ..+++|+...+..+
T Consensus 514 ~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 514 SSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp ESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred eCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 9999975544445 56788877666554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=165.07 Aligned_cols=180 Identities=26% Similarity=0.276 Sum_probs=114.7
Q ss_pred CeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEe
Q 041155 215 SYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYL 294 (471)
Q Consensus 215 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l 294 (471)
+.++.+++.++ .+|..+ .++|++|++++|.+...+ ...+.++++|++|++++|++++.+ +..+..+++|++|++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEEC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccC--hhhcCCCCCcCEEEC
Confidence 56677777766 566554 357777777777765433 233566777777777777776653 234566777777777
Q ss_pred cCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCC
Q 041155 295 YRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVP 374 (471)
Q Consensus 295 ~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 374 (471)
++|++++..+..+..+ ++|++|++++|++++ ..+..+..+++|++|++++|++++..+
T Consensus 84 s~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~-------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKL---TQLKELALNTNQLQS-------------------LPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CSSCCCCCCTTTTTTC---TTCCEEECCSSCCCC-------------------CCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCcCCccCHhHhcCc---cCCCEEEcCCCcCcc-------------------cCHhHhccCCcCCEEECCCCccceeCH
Confidence 7777766555555555 666666666665542 233345667777777777777775445
Q ss_pred hhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCC
Q 041155 375 DFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSS 435 (471)
Q Consensus 375 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~ 435 (471)
..+..+++|++|++++|.+.+..| +|++|+++.|+++|.+|. ++.++.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~~~~-------------~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDCTCP-------------GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCTT-------------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHhccCCCccEEEecCCCeecCCC-------------CHHHHHHHHHhCCceeeccCccccC
Confidence 456667777777777776665432 566677777777777776 665544
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.2e-19 Score=177.30 Aligned_cols=236 Identities=20% Similarity=0.225 Sum_probs=175.6
Q ss_pred CEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCc-cccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcE-EE
Q 041155 190 TYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPS-HLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTY-LD 267 (471)
Q Consensus 190 ~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~-~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~-L~ 267 (471)
++++.++++++ .||..+ .+++++|+|++|+++ .||+ .|.++++|++|+|++|++........+.+++++++ +.
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 67888999998 488876 368999999999998 5664 68999999999999999654333345788888775 56
Q ss_pred cCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc-------cccEEEc
Q 041155 268 LGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY-------NLVLLGL 340 (471)
Q Consensus 268 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~-------~L~~L~L 340 (471)
++.|++...+ +..+..+++|++|++++|++.+..+..+... .++..+++.++.-...+|.. .++.|++
T Consensus 87 ~~~N~l~~l~--~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 87 EKANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDVHKIHS---LQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEETTCCEEC--TTSBCCCTTCCEEEEEEECCSSCCCCTTCCB---SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred ccCCcccccC--chhhhhccccccccccccccccCCchhhccc---chhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 6778888764 3578999999999999999988766555555 67888888664333333331 5778888
Q ss_pred ccccCccCcCccccCCCCCCEEeCcCCcCcccCCh-hccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcc
Q 041155 341 DSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPD-FFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLS 419 (471)
Q Consensus 341 s~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~ 419 (471)
++|+++ .+|.......+|+++++++|+..+.+|. .+..+++|++||+++|+|+ .+|.. .+. +|+.|.+.
T Consensus 162 ~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~------~L~~L~~l 231 (350)
T 4ay9_X 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLE------NLKKLRAR 231 (350)
T ss_dssp CSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCT------TCCEEECT
T ss_pred cccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhc------cchHhhhc
Confidence 888887 5666665667888888875443346664 5678888888999888888 45542 123 67777776
Q ss_pred cCcCcccCCCCCCCCCCCEEECcCCc
Q 041155 420 SNEITGSVPDLGGFSSLKELYLENNR 445 (471)
Q Consensus 420 ~N~l~g~ip~~~~l~~L~~L~Ls~N~ 445 (471)
++.--..+|.+..+++|+.++++++.
T Consensus 232 ~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 232 STYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp TCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred cCCCcCcCCCchhCcChhhCcCCCCc
Confidence 66555577888888888888887653
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=163.94 Aligned_cols=130 Identities=24% Similarity=0.300 Sum_probs=85.4
Q ss_pred ccEEEcccccCccCcC-ccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCc
Q 041155 335 LVLLGLDSNLLRGSIP-VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413 (471)
Q Consensus 335 L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L 413 (471)
+++|++++|++++..| ..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..++ +|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L 107 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE------SL 107 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS------SC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc------CC
Confidence 3344444444444333 2356667777777777777765555667777777777777777766665566665 67
Q ss_pred cEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 414 EMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 414 ~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
++|+|++|++++..|. +..+++|++|+|++|++++..|..+..+++|+.|+|++|++
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 7777777777766666 66777777777777777776676777777777777777765
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.1e-18 Score=184.07 Aligned_cols=173 Identities=24% Similarity=0.296 Sum_probs=112.7
Q ss_pred hhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCC
Q 041155 183 LLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSS 262 (471)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~ 262 (471)
+..+++|++|++++|.+.. +| .+..+++|++|+|++|.+++. |+ +..+++|++|+|++|.+...+ .+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKDLS---SLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCT---TSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCCCh---hhccCCC
Confidence 3466777777777777763 44 467777777777777777753 33 777777777777777765443 3677777
Q ss_pred CcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEccc
Q 041155 263 LTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDS 342 (471)
Q Consensus 263 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~ 342 (471)
|++|+|++|.+.+.+ .+..+++|+.|+|++|.+++. ..+..+ ++|+.|+|++|.+++.
T Consensus 111 L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~~------------- 168 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDI------------- 168 (605)
T ss_dssp CCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC--GGGGSC---TTCSEEECCSSCCCCC-------------
T ss_pred CCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc--hhhccc---CCCCEEECcCCcCCCc-------------
Confidence 777777777777642 466777777777777777764 345555 6666666666665532
Q ss_pred ccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcc
Q 041155 343 NLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRG 395 (471)
Q Consensus 343 n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 395 (471)
.| +..+++|+.|+|++|++++ +| .+..+++|+.|+|++|.+++
T Consensus 169 ------~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 ------VP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ------GG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred ------hh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 22 4555666666666666654 33 35556666666666666654
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.6e-20 Score=202.50 Aligned_cols=182 Identities=21% Similarity=0.134 Sum_probs=101.3
Q ss_pred ccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhh
Q 041155 178 TISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWL 257 (471)
Q Consensus 178 ~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l 257 (471)
..|..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.+..++ ..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp--~~~ 289 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLP--AEL 289 (727)
T ss_dssp -------CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCC--SSG
T ss_pred cChhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccC--hhh
Confidence 44566677777888888888777 36777777788888888888877 77777777888888888888766442 457
Q ss_pred cCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccE
Q 041155 258 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVL 337 (471)
Q Consensus 258 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~ 337 (471)
+++++|++|+|++|.++..+ ..++.+++|++|+|++|.+++.+|..+..+. ..+..+++++|.++|.+|. .++.
T Consensus 290 ~~l~~L~~L~L~~N~l~~lp---~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~--~~~~~l~l~~N~l~~~~p~-~l~~ 363 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVTTLP---WEFGNLCNLQFLGVEGNPLEKQFLKILTEKS--VTGLIFYLRDNRPEIPLPH-ERRF 363 (727)
T ss_dssp GGGTTCSEEECCSSCCCCCC---SSTTSCTTCCCEECTTSCCCSHHHHHHHHHH--HHHHHHHHHHCCCCCCCCC-C---
T ss_pred cCCCCCCEEECCCCCCCccC---hhhhcCCCccEEeCCCCccCCCChHHHhhcc--hhhhHHhhccCcccCcCcc-ccce
Confidence 77777888888887776543 3577778888888888888777776665431 1223466777777777765 4666
Q ss_pred EEcccc--------cCccCcCccccCCCCCCEEeCcCCcCc
Q 041155 338 LGLDSN--------LLRGSIPVAFKHMVSLSFLGLASNEFE 370 (471)
Q Consensus 338 L~Ls~n--------~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 370 (471)
|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 666665 333334444555666667777777665
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.3e-18 Score=167.29 Aligned_cols=126 Identities=28% Similarity=0.332 Sum_probs=57.4
Q ss_pred CCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCc
Q 041155 185 QLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLT 264 (471)
Q Consensus 185 ~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 264 (471)
.+++|++|++++|.++. +| .+..+++|++|++++|.+++ +++ +.++++|++|++++|.+... ..+..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDL---SSLKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCG---GGGTTCTTCC
T ss_pred hcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCC---hhhccCCCCC
Confidence 34445555555554442 22 24445555555555555543 222 44455555555555543322 1244445555
Q ss_pred EEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCC
Q 041155 265 YLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLT 327 (471)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~ 327 (471)
+|++++|.+.+.+ .+..+++|++|++++|++++. ..++.+ ++|+.|++++|.++
T Consensus 116 ~L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~--~~l~~l---~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 116 SLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQIS 169 (291)
T ss_dssp EEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC--GGGGGC---TTCSEEECCSSCCC
T ss_pred EEECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcc--hhhccC---CCCCEEEccCCccc
Confidence 5555555544431 344445555555555554443 233333 44444444444443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.3e-19 Score=168.67 Aligned_cols=192 Identities=24% Similarity=0.322 Sum_probs=154.0
Q ss_pred CCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEE
Q 041155 213 KLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTL 292 (471)
Q Consensus 213 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 292 (471)
++..+.+..+.+++.+ .+..+++|++|++++|.+...+ .+..+++|++|++++|.+++.+ .+..+++|++|
T Consensus 25 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~---~~~~l~~L~~L~L~~n~l~~~~----~l~~l~~L~~L 95 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIK----PLANLKNLGWL 95 (291)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEE
T ss_pred HHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccCh---hHhcCCCCCEEEccCCccCCCc----ccccCCCCCEE
Confidence 3444556666665432 2457889999999999876654 3788899999999999998864 27889999999
Q ss_pred EecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCccc
Q 041155 293 YLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG 372 (471)
Q Consensus 293 ~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 372 (471)
++++|.+++ +| .+..+ ++|++|++++|.+++ + +.+..+++|++|++++|++++.
T Consensus 96 ~l~~n~l~~-~~-~l~~l---~~L~~L~L~~n~i~~--------------------~-~~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 96 FLDENKVKD-LS-SLKDL---KKLKSLSLEHNGISD--------------------I-NGLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp ECCSSCCCC-GG-GGTTC---TTCCEEECTTSCCCC--------------------C-GGGGGCTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCC-Ch-hhccC---CCCCEEECCCCcCCC--------------------C-hhhcCCCCCCEEEccCCcCCcc
Confidence 999999887 33 36666 888888888887763 2 3577889999999999999964
Q ss_pred CChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccC
Q 041155 373 VPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFT 450 (471)
Q Consensus 373 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~i 450 (471)
..+..+++|+.|++++|++++..| +..++ +|++|++++|.+++ +|.+..+++|+.|++++|+++...
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~------~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLT------KLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCT------TCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCC------ccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCCc
Confidence 578899999999999999997554 77776 89999999999986 566889999999999999998643
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.3e-18 Score=158.60 Aligned_cols=131 Identities=25% Similarity=0.365 Sum_probs=95.6
Q ss_pred cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCc
Q 041155 334 NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413 (471)
Q Consensus 334 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L 413 (471)
+++.|++++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|+++...+..+..++ +|
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------~L 106 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF------SL 106 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC------CC
Confidence 455555555555544455677777888888888888776677777788888888888888744444455565 78
Q ss_pred cEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 414 EMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 414 ~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
++|+|++|++++..|. +..+++|++|+|++|++++..+..+..+++|+.|+|++|++
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8888888888777776 77788888888888888877777777788888888888775
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.6e-18 Score=182.69 Aligned_cols=225 Identities=19% Similarity=0.260 Sum_probs=171.2
Q ss_pred CCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEE
Q 041155 187 HRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYL 266 (471)
Q Consensus 187 ~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 266 (471)
..+..+.+..+.+.+. ++ +..+++|++|++++|.+. .+| .+..+++|++|+|++|.+...+. +..+++|++|
T Consensus 21 ~~l~~l~l~~~~i~~~-~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L 92 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDA-VT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHTTCSCTTSE-EC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEE
T ss_pred HHHHHHhccCCCcccc-cc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEE
Confidence 3455567777777753 32 457889999999999987 455 58899999999999999766543 8889999999
Q ss_pred EcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCc
Q 041155 267 DLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLR 346 (471)
Q Consensus 267 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~ 346 (471)
+|++|.+.+.+ .+..+++|++|++++|.+.+. ..+..+ ++|+.|+|++|.+++
T Consensus 93 ~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~------------------ 145 (605)
T 1m9s_A 93 FLDENKIKDLS----SLKDLKKLKSLSLEHNGISDI--NGLVHL---PQLESLYLGNNKITD------------------ 145 (605)
T ss_dssp ECCSSCCCCCT----TSTTCTTCCEEECTTSCCCCC--GGGGGC---TTCSEEECCSSCCCC------------------
T ss_pred ECcCCCCCCCh----hhccCCCCCEEEecCCCCCCC--ccccCC---CccCEEECCCCccCC------------------
Confidence 99999998753 678899999999999998873 346666 788888888887763
Q ss_pred cCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc
Q 041155 347 GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS 426 (471)
Q Consensus 347 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ 426 (471)
+ ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++++ +| .+..++ +|+.|+|++|.+++.
T Consensus 146 --l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~------~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 146 --I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLK------NLDVLELFSQECLNK 212 (605)
T ss_dssp --C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCT------TCSEEECCSEEEECC
T ss_pred --c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCC------CCCEEEccCCcCcCC
Confidence 2 457889999999999999997666 8899999999999999996 44 477776 899999999999875
Q ss_pred CCC-CC-------------CCCCCCEEECcCCcccccCchhhhcCCC
Q 041155 427 VPD-LG-------------GFSSLKELYLENNRLNGFTNNSIGQMSK 459 (471)
Q Consensus 427 ip~-~~-------------~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 459 (471)
... +. .....+.+...++...|.++..+..+..
T Consensus 213 p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~ 259 (605)
T 1m9s_A 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259 (605)
T ss_dssp CCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCCS
T ss_pred cccccccEEecccccccCCCCcCchhcccCCcccCCcceeccccccc
Confidence 322 22 2223344445555556666655555443
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.9e-18 Score=156.29 Aligned_cols=111 Identities=19% Similarity=0.269 Sum_probs=65.3
Q ss_pred cccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCC
Q 041155 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLG 431 (471)
Q Consensus 352 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~ 431 (471)
.+..+++|++|++++|++++..|..++.+++|++|++++|++++..|..++.++ +|++|++++|++.+.+|.+.
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~------~L~~L~L~~n~~i~~~~~l~ 156 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP------KVNSIDLSYNGAITDIMPLK 156 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS------SCCEEECCSCTBCCCCGGGG
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC------CCCEEEccCCCCccccHhhc
Confidence 345555666666666666655555566666666666666666655555555555 56666666665333444555
Q ss_pred CCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 432 GFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 432 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
.+++|++|++++|++++. + .+..+++|+.|++++|++
T Consensus 157 ~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred CCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 666666666666666552 2 456666666666666654
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8.2e-18 Score=155.85 Aligned_cols=149 Identities=28% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccc-----cccEEEcccccCccCcCccccCCCCCCEEe
Q 041155 289 LTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPY-----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLG 363 (471)
Q Consensus 289 L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~-----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~ 363 (471)
-+.++.+++.++. +|..+. ++|++|++++|.+++..|.. +|++|+|++|++++..+..+..+++|++|+
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP-----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEccCCCcCc-cCCCCC-----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 4566666666554 443332 56666777766666554432 555555555555433334445555555555
Q ss_pred CcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECc
Q 041155 364 LASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLE 442 (471)
Q Consensus 364 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls 442 (471)
|++|++++..+..+..+++|++|+|++|+++ .+|..+..++ +|++|+|++|++++..+. +..+++|+.|+++
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT------HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC------CCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 5555555444444455555555555555555 4555555554 555555555555544444 5555555555555
Q ss_pred CCcccccC
Q 041155 443 NNRLNGFT 450 (471)
Q Consensus 443 ~N~l~g~i 450 (471)
+|.+++..
T Consensus 168 ~N~~~c~c 175 (229)
T 3e6j_A 168 GNPWDCEC 175 (229)
T ss_dssp TSCBCTTB
T ss_pred CCCccCCc
Confidence 55555443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.7e-18 Score=155.46 Aligned_cols=155 Identities=23% Similarity=0.256 Sum_probs=110.9
Q ss_pred cEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCc-ccccCCCCCCcccEEECCCCcCCCccccccccEEEccc
Q 041155 264 TYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVP-LSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDS 342 (471)
Q Consensus 264 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p-~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~ 342 (471)
+.+++++|.++..|. .+ .+.+++|++++|++++..| ..+..+ ++|++|++++|.++
T Consensus 14 ~~l~~s~n~l~~iP~---~~--~~~~~~L~L~~N~l~~~~~~~~~~~l---~~L~~L~L~~N~i~--------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE---HI--PQYTAELRLNNNEFTVLEATGIFKKL---PQLRKINFSNNKIT--------------- 70 (220)
T ss_dssp TEEECCSSCCSSCCS---CC--CTTCSEEECCSSCCCEECCCCCGGGC---TTCCEEECCSSCCC---------------
T ss_pred CEeEeCCCCcccCcc---CC--CCCCCEEEcCCCcCCccCchhhhccC---CCCCEEECCCCcCC---------------
Confidence 467777777766532 22 2345677777777766544 335555 66666666666555
Q ss_pred ccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCc
Q 041155 343 NLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNE 422 (471)
Q Consensus 343 n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~ 422 (471)
+..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..++ +|++|+|++|+
T Consensus 71 ----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~ 140 (220)
T 2v70_A 71 ----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------SVRLLSLYDNQ 140 (220)
T ss_dssp ----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT------TCSEEECTTSC
T ss_pred ----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc------cCCEEECCCCc
Confidence 34445677788888888888888876666778888888888888888877777777776 78888888888
Q ss_pred CcccCCC-CCCCCCCCEEECcCCcccccCc
Q 041155 423 ITGSVPD-LGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 423 l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
+++..|. +..+++|++|++++|.+++..+
T Consensus 141 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 141 ITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8887777 8888888888888888876544
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2e-17 Score=153.29 Aligned_cols=162 Identities=22% Similarity=0.207 Sum_probs=131.3
Q ss_pred CCCCCCcceeeeCCCCCceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCC
Q 041155 142 KRDRCKWAGVGCSNRTGHVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSF 221 (471)
Q Consensus 142 ~~~~~~~~g~~~~~~~~~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~ 221 (471)
....|.|.++.|.. +.++ .+|..+. ++|++|+|++|.+++. .|..+.++++|++|+|++
T Consensus 15 ~~~~Cs~~~v~c~~-----------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 15 SQCSCSGTTVDCRS-----------------KRHA-SVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGS 73 (229)
T ss_dssp TTCEEETTEEECTT-----------------SCCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCCEEeCCEeEccC-----------------CCcC-ccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCC
Confidence 45678888888853 2332 5665443 7899999999999986 788899999999999999
Q ss_pred CcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCC
Q 041155 222 AEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPP 301 (471)
Q Consensus 222 n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g 301 (471)
|++++..+..+..+++|++|++++|++...+. ..+..+++|++|++++|+++..+ ..+..+++|++|++++|++++
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTELP---RGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSCC---TTGGGCTTCSEEECCSSCCCC
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccccC---cccccCCCCCEEECCCCcCCc
Confidence 99975444567899999999999999765542 44788999999999999998653 477889999999999999998
Q ss_pred CCcccccCCCCCCcccEEECCCCcCCCccc
Q 041155 302 IVPLSLSNLNYSTSLQFLELSENNLTNSIY 331 (471)
Q Consensus 302 ~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip 331 (471)
..+..+..+ ++|+.|++++|.+.+..+
T Consensus 150 ~~~~~~~~l---~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 150 IPHGAFDRL---SSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCTTTTTTC---TTCCEEECTTSCBCTTBG
T ss_pred cCHHHHhCC---CCCCEEEeeCCCccCCcc
Confidence 777777777 899999999999887654
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=8.8e-21 Score=198.69 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=149.7
Q ss_pred cCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCC-------------CCCCCcccccCCCCCCcccEEE-CCC
Q 041155 258 SHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH-------------LPPIVPLSLSNLNYSTSLQFLE-LSE 323 (471)
Q Consensus 258 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~g~~p~~l~~l~~~~~L~~L~-Ls~ 323 (471)
..+++|+.|++++|.+.. +|..++++++|++|++++|. ..+.+|..++.+ ++|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~---Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l---~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV---LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF---STLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH---HHHHHHCGGGH
T ss_pred ccCccceeccCChhhHHh---hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH---HhcccCcchhh
Confidence 445666666666666653 34566666666666665443 456666677776 6777777 454
Q ss_pred CcCCC------------ccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCC
Q 041155 324 NNLTN------------SIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDN 391 (471)
Q Consensus 324 N~l~g------------~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 391 (471)
|.+.. .+|...|+.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|
T Consensus 420 n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred cccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 43221 1233378999999999996 776 999999999999999999 89999999999999999999
Q ss_pred cCcccCcHHhhhccCCCCcCCccEEEcccCcCcccC-CC-CCCCCCCCEEECcCCcccccCch---hhhcCCCCCEEEC
Q 041155 392 KLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSV-PD-LGGFSSLKELYLENNRLNGFTNN---SIGQMSKLRTLSL 465 (471)
Q Consensus 392 ~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~i-p~-~~~l~~L~~L~Ls~N~l~g~ip~---~l~~l~~L~~L~L 465 (471)
++++ +| .++.++ +|++|+|++|++++.+ |. ++.+++|+.|+|++|.+++.+|. .+..+++|+.|++
T Consensus 497 ~l~~-lp-~l~~l~------~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALEN-VD-GVANLP------RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-CG-GGTTCS------SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-Cc-ccCCCC------CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9996 77 788887 8999999999999987 77 99999999999999999988663 2455899999975
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.5e-18 Score=168.64 Aligned_cols=112 Identities=23% Similarity=0.340 Sum_probs=47.8
Q ss_pred ccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-C-
Q 041155 353 FKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-L- 430 (471)
Q Consensus 353 l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~- 430 (471)
|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|+|++|++++..+. +
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCSCCGGGTC
T ss_pred ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc------cCCEEECCCCcCCeeCHHHhc
Confidence 34444444444444444433333344444444444444444433333444333 444444444444432222 2
Q ss_pred --CCCCCCCEEECcCCcccccCchhhhcCCC--CCEEECcCCCC
Q 041155 431 --GGFSSLKELYLENNRLNGFTNNSIGQMSK--LRTLSLNGNSL 470 (471)
Q Consensus 431 --~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~--L~~L~Ls~N~l 470 (471)
..+++|+.|+|++|++++..+..+..++. ++.|+|++|++
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 33445555555555555443344444443 24455555543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.5e-21 Score=204.49 Aligned_cols=199 Identities=21% Similarity=0.185 Sum_probs=127.5
Q ss_pred CCCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCC------------CCCCChhhhcCCCCCcEEE-cCCccCCC
Q 041155 209 GSLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHL------------FSVGNLDWLSHLSSLTYLD-LGSNNLSR 275 (471)
Q Consensus 209 ~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~------------~~~~~~~~l~~l~~L~~L~-Ls~n~l~~ 275 (471)
..+++|+.|+|+.|.++ .+|+.++++++|+.|++++|.. .....+..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34555666666666655 5566666666666666544320 0001112344555555555 34433221
Q ss_pred CCch---hhhhCC--CCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcC
Q 041155 276 STDW---LQVVGN--LPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIP 350 (471)
Q Consensus 276 ~~~~---~~~l~~--l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip 350 (471)
.... ...+.. ...|+.|++++|.+++ +|. ++.+ ++|+.|++++|.++ .+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l---~~L~~L~Ls~N~l~--------------------~lp 479 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQL---LLVTHLDLSHNRLR--------------------ALP 479 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGG---TTCCEEECCSSCCC--------------------CCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-cccc---ccCcEeecCccccc--------------------ccc
Confidence 1000 000000 1246777777777776 454 6666 66666666666554 677
Q ss_pred ccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccC-cHHhhhccCCCCcCCccEEEcccCcCcccCCC
Q 041155 351 VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHF-PELIQNLSSGCTKNSLEMLYLSSNEITGSVPD 429 (471)
Q Consensus 351 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~ 429 (471)
..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..++.++ +|+.|+|++|.+++.+|.
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~------~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP------RLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT------TCCEEECTTSGGGGSSSC
T ss_pred hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC------CCCEEEecCCcCCCCccH
Confidence 788889999999999999986 77 7888999999999999999776 88888888 899999999999887765
Q ss_pred C----CCCCCCCEEEC
Q 041155 430 L----GGFSSLKELYL 441 (471)
Q Consensus 430 ~----~~l~~L~~L~L 441 (471)
. ..+++|++|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 3 34788888864
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=1e-18 Score=188.47 Aligned_cols=176 Identities=24% Similarity=0.344 Sum_probs=93.7
Q ss_pred hcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcccccccc
Q 041155 257 LSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLV 336 (471)
Q Consensus 257 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~ 336 (471)
+..++.|++|+|++|.+...+ ..+..+++|++|+|++|.++ .+|..++++ ++|++|+|++|.++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---~~L~~L~Ls~N~l~--------- 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNIS---ANIFKYDFLTRLYLNGNSLT-ELPAEIKNL---SNLRVLDLSHNRLT--------- 283 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCC---GGGGGCCSCSCCBCTTSCCS-CCCGGGGGG---TTCCEEECTTSCCS---------
T ss_pred hccCCCCcEEECCCCCCCCCC---hhhcCCCCCCEEEeeCCcCc-ccChhhhCC---CCCCEEeCcCCcCC---------
Confidence 555666666666666665432 24456666777777777666 566666666 66666666666554
Q ss_pred EEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEE
Q 041155 337 LLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEML 416 (471)
Q Consensus 337 ~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L 416 (471)
.+|..|+.+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.|++.+|..+..+.. .+..+
T Consensus 284 -----------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-----~~~~l 346 (727)
T 4b8c_D 284 -----------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-----TGLIF 346 (727)
T ss_dssp -----------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-----HHHHH
T ss_pred -----------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-----hhhHH
Confidence 45666777777888888877776 67777777778888888888887777777665431 23346
Q ss_pred EcccCcCcccCCCCCCCCCCCEEECcCC--------cccccCchhhhcCCCCCEEECcCCCC
Q 041155 417 YLSSNEITGSVPDLGGFSSLKELYLENN--------RLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 417 ~L~~N~l~g~ip~~~~l~~L~~L~Ls~N--------~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
+|++|.++|.+|. .|+.|+++.| .+.+.++..+..+..+....+++|-+
T Consensus 347 ~l~~N~l~~~~p~-----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 347 YLRDNRPEIPLPH-----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HHHHCCCCCCCCC-----C-----------------------------------------CC
T ss_pred hhccCcccCcCcc-----ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 7777777777774 3445555555 33333444445555566666666644
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=150.73 Aligned_cols=93 Identities=14% Similarity=0.261 Sum_probs=54.6
Q ss_pred CcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccC
Q 041155 348 SIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSV 427 (471)
Q Consensus 348 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~i 427 (471)
..|..++.+++|++|++++|++++..|..++.+++|++|++++|.+.+.+| .+..++ +|++|++++|.+++ +
T Consensus 103 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~------~L~~L~l~~n~i~~-~ 174 (197)
T 4ezg_A 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP------ELKSLNIQFDGVHD-Y 174 (197)
T ss_dssp GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS------SCCEEECTTBCCCC-C
T ss_pred ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC------CCCEEECCCCCCcC-h
Confidence 344455556666666666666666566666666666666666666333444 455555 66666666666664 3
Q ss_pred CCCCCCCCCCEEECcCCcccc
Q 041155 428 PDLGGFSSLKELYLENNRLNG 448 (471)
Q Consensus 428 p~~~~l~~L~~L~Ls~N~l~g 448 (471)
+.+..+++|++|++++|++.+
T Consensus 175 ~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 RGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TTGGGCSSCCEEEECBC----
T ss_pred HHhccCCCCCEEEeeCcccCC
Confidence 356666677777777776643
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=4.5e-17 Score=149.87 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=40.6
Q ss_pred ccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-
Q 041155 351 VAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD- 429 (471)
Q Consensus 351 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~- 429 (471)
..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|+|++|++++..+.
T Consensus 74 ~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH------NLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTT
T ss_pred HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC------CCCEEECCCCcCCEECHHH
Confidence 3344444444444444444422222234444444444444444444444444443 444444444444444443
Q ss_pred CCCCCCCCEEECcCCcc
Q 041155 430 LGGFSSLKELYLENNRL 446 (471)
Q Consensus 430 ~~~l~~L~~L~Ls~N~l 446 (471)
+..+++|++|++++|.+
T Consensus 148 ~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTCTTCCEEECCSSCE
T ss_pred HhCCCCCCEEEeCCCCc
Confidence 44444455555554444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=7e-18 Score=159.69 Aligned_cols=167 Identities=20% Similarity=0.293 Sum_probs=100.4
Q ss_pred eEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCCCCC
Q 041155 160 VIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSALQ 239 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~ 239 (471)
++.++++. +.+++ ++ .+..+++|++|++++|.++. +| .+..+++|++|++++|.+++ +|+ +.++++|+
T Consensus 21 l~~l~l~~-----~~i~~-~~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~ 88 (263)
T 1xeu_A 21 AVKQNLGK-----QSVTD-LV-SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHTC-----SCTTS-EE-CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCC
T ss_pred HHHHHhcC-----CCccc-cc-chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCC
Confidence 44455555 44442 33 45667777777777777763 45 56667777777777777764 343 66777777
Q ss_pred EEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEE
Q 041155 240 HLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFL 319 (471)
Q Consensus 240 ~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L 319 (471)
+|++++|++...+. +.. ++|++|++++|++++.+ .+..+++|++|++++|++++. + .++.+ ++|+.|
T Consensus 89 ~L~L~~N~l~~l~~---~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l---~~L~~L 155 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG---IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSI-V-MLGFL---SKLEVL 155 (263)
T ss_dssp EEECCSSCCSCCTT---CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBC-G-GGGGC---TTCCEE
T ss_pred EEECCCCccCCcCc---ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCC-h-HHccC---CCCCEE
Confidence 77777777554432 222 66666677666666542 356666666666666666653 2 34444 555565
Q ss_pred ECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCccc
Q 041155 320 ELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG 372 (471)
Q Consensus 320 ~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 372 (471)
++++|.+++ . ..+..+++|+.|++++|.+++.
T Consensus 156 ~L~~N~i~~-------------------~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITN-------------------T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCB-------------------C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcc-------------------h--HHhccCCCCCEEeCCCCcccCC
Confidence 555555542 1 3455666777777777776643
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=5.1e-17 Score=146.20 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=86.7
Q ss_pred cEEECCCCcCCCccccc---cccEEEcccccCccCcCc-cccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCc
Q 041155 317 QFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPV-AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNK 392 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 392 (471)
+.+++++|.++ .+|.. ++++|++++|++++..+. .++.+++|++|+|++|++++..|..+..+++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67778877774 34432 677777777777654443 36677777777777777776666667777777777777777
Q ss_pred CcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCc
Q 041155 393 LRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 393 l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
+++..|..+..++ +|++|+|++|++++.+|. ++.+++|++|++++|.+++..+
T Consensus 90 l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLH------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCT------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCC------CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7766665566655 677777777777776666 6677777777777777766544
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.9e-16 Score=156.89 Aligned_cols=147 Identities=27% Similarity=0.329 Sum_probs=118.6
Q ss_pred EEECCCCcCCCccccc---cccEEEcccccCccCcCcccc-CCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 318 FLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFK-HMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 318 ~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
.++++++.++. +|.. .++.|+|++|++++..+..+. .+++|++|+|++|++++..|..+..+++|++|+|++|++
T Consensus 22 ~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 44455444443 2221 455666666666665666676 899999999999999987778899999999999999999
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhh---hcCCCCCEEECcCCC
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSI---GQMSKLRTLSLNGNS 469 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l---~~l~~L~~L~Ls~N~ 469 (471)
++..+..+..++ +|++|+|++|++++..|. +..+++|++|+|++|++++..+..+ ..+++|+.|+|++|+
T Consensus 101 ~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 101 HTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCHHHhCCCc------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 977777788887 899999999999998888 9999999999999999997555445 679999999999998
Q ss_pred CC
Q 041155 470 LR 471 (471)
Q Consensus 470 l~ 471 (471)
|+
T Consensus 175 l~ 176 (361)
T 2xot_A 175 LK 176 (361)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3e-17 Score=155.34 Aligned_cols=171 Identities=18% Similarity=0.258 Sum_probs=128.4
Q ss_pred CCCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCC
Q 041155 210 SLTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLL 289 (471)
Q Consensus 210 ~l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 289 (471)
++.+++.++++.+.++ .++ .+..+++|++|++++|.+...+ .+..+++|++|++++|++++.+ . +..+++|
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~---~-l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLS---P-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG---G-GTTCSSC
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCCh---h-hccCCCC
Confidence 4566778888888887 344 5778888999999988876554 4778888888888888888764 2 7788888
Q ss_pred CEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcC
Q 041155 290 TTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEF 369 (471)
Q Consensus 290 ~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l 369 (471)
++|++++|++++. |... . ++|+.|++++|+++ + ++ .+..+++|++|++++|++
T Consensus 88 ~~L~L~~N~l~~l-~~~~----~-~~L~~L~L~~N~l~-------------------~-~~-~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 88 EELSVNRNRLKNL-NGIP----S-ACLSRLFLDNNELR-------------------D-TD-SLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp CEEECCSSCCSCC-TTCC----C-SSCCEEECCSSCCS-------------------B-SG-GGTTCTTCCEEECTTSCC
T ss_pred CEEECCCCccCCc-Cccc----c-CcccEEEccCCccC-------------------C-Ch-hhcCcccccEEECCCCcC
Confidence 8888888888763 2211 1 45566666655554 2 23 478889999999999999
Q ss_pred cccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc
Q 041155 370 EGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS 426 (471)
Q Consensus 370 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ 426 (471)
++ +| .+..+++|+.|++++|++++. ..+..++ +|+.|++++|.+++.
T Consensus 141 ~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~------~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLK------KVNWIDLTGQKCVNE 187 (263)
T ss_dssp CB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCC------CCCEEEEEEEEEECC
T ss_pred CC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCC------CCCEEeCCCCcccCC
Confidence 86 44 688899999999999999865 4566666 899999999998865
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=7e-17 Score=138.91 Aligned_cols=126 Identities=23% Similarity=0.278 Sum_probs=110.3
Q ss_pred cccEEEcccccCc-cCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCC
Q 041155 334 NLVLLGLDSNLLR-GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412 (471)
Q Consensus 334 ~L~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~ 412 (471)
+++.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|++++|++++.+|..+..++ +
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------~ 89 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP------N 89 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT------T
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC------C
Confidence 4666666666666 67888889999999999999999965 7789999999999999999988999888888 8
Q ss_pred ccEEEcccCcCccc-CCC-CCCCCCCCEEECcCCcccccCc---hhhhcCCCCCEEECcC
Q 041155 413 LEMLYLSSNEITGS-VPD-LGGFSSLKELYLENNRLNGFTN---NSIGQMSKLRTLSLNG 467 (471)
Q Consensus 413 L~~L~L~~N~l~g~-ip~-~~~l~~L~~L~Ls~N~l~g~ip---~~l~~l~~L~~L~Ls~ 467 (471)
|++|++++|++++. .|. ++.+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999984 335 9999999999999999998876 5789999999999874
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=9.4e-17 Score=141.06 Aligned_cols=129 Identities=23% Similarity=0.259 Sum_probs=104.8
Q ss_pred cccEEEcccccCc-cCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCC
Q 041155 334 NLVLLGLDSNLLR-GSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNS 412 (471)
Q Consensus 334 ~L~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~ 412 (471)
+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..++ +
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~ 96 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP------N 96 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT------T
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC------C
Confidence 4555555555665 57777788888999999999998864 6788889999999999999987888887787 8
Q ss_pred ccEEEcccCcCcccC--CCCCCCCCCCEEECcCCcccccCc---hhhhcCCCCCEEECcCCCC
Q 041155 413 LEMLYLSSNEITGSV--PDLGGFSSLKELYLENNRLNGFTN---NSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 413 L~~L~L~~N~l~g~i--p~~~~l~~L~~L~Ls~N~l~g~ip---~~l~~l~~L~~L~Ls~N~l 470 (471)
|++|++++|++++.. +.++.+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999999999988743 238888999999999999987766 5788899999999998875
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=2.9e-16 Score=141.23 Aligned_cols=127 Identities=28% Similarity=0.323 Sum_probs=99.6
Q ss_pred CEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcccc--c----cccEEEcccccCccCcCccccCCCCCCEEe
Q 041155 290 TTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYP--Y----NLVLLGLDSNLLRGSIPVAFKHMVSLSFLG 363 (471)
Q Consensus 290 ~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~--~----~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~ 363 (471)
+++++++|+++ .+|..+. .++++|++++|.+++..+. . +|++|++++|++++..|..|..+++|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 67888888874 3565442 4688888888888776653 1 788888888888887788888888888888
Q ss_pred CcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCC
Q 041155 364 LASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP 428 (471)
Q Consensus 364 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip 428 (471)
|++|++++..|..+..+++|++|+|++|++++.+|..+..++ +|++|++++|.+++..+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN------SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT------TCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC------CCCEEEeCCCCccCcCc
Confidence 888888877777788888888888888888887787777776 78888888888887655
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=9.8e-16 Score=137.91 Aligned_cols=123 Identities=26% Similarity=0.330 Sum_probs=62.5
Q ss_pred cEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 317 QFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 317 ~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
+.+++++|.++. +|.. ++++|++++|.++ .+|..+..+++|++|+|++|++++..+..+..+++|++|+|++|++
T Consensus 13 ~~l~~~~~~l~~-ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSS-CCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCc-CCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666652 3321 4555555555554 4444555555555555555555544444455555555555555555
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCccc
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLN 447 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~ 447 (471)
++..|..+..++ +|++|+|++|++++..+. +..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLK------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCT------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCC------CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 544444444444 455555555555543333 445555555555555544
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.3e-15 Score=132.37 Aligned_cols=131 Identities=22% Similarity=0.286 Sum_probs=95.2
Q ss_pred cccEEECCCCcCCCcccc--ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCc
Q 041155 315 SLQFLELSENNLTNSIYP--YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNK 392 (471)
Q Consensus 315 ~L~~L~Ls~N~l~g~ip~--~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 392 (471)
..+.+++++|+++..... .++++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 356788888887643221 277888888888876555667778888888888888876555556778888888888888
Q ss_pred CcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCc
Q 041155 393 LRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 393 l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
+++..+..+..++ +|++|++++|++++..+. +..+++|++|++++|.+++..|
T Consensus 88 l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLT------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCc------ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8865555566666 788888888888765555 6777888888888888877655
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=7.8e-16 Score=135.12 Aligned_cols=136 Identities=27% Similarity=0.283 Sum_probs=98.9
Q ss_pred CceEEEEeCCCCCCCCCcc-cccchhhhCCCCCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCCccccCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLR-GTISPALLQLHRLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIPSHLGNLS 236 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~-g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~ 236 (471)
++++.|++++ |.++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+|..+.+++
T Consensus 24 ~~L~~L~l~~-----n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDN-----CKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCS-----CBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCC-----CCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 4577788887 5666 6777777788888888888888774 3 6677788888888888888876777777788
Q ss_pred CCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchh-hhhCCCCCCCEEEecCCCCCC
Q 041155 237 ALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWL-QVVGNLPLLTTLYLYRCHLPP 301 (471)
Q Consensus 237 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~l~~n~l~g 301 (471)
+|++|++++|.+...+.+..+..+++|++|++++|.+++.+.+. ..+..+++|++|++++|.+..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888888887665544455777777888888888777664211 356777777777777776654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.1e-15 Score=131.39 Aligned_cols=126 Identities=23% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCCCEEEecCCCCC-CCCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCc
Q 041155 287 PLLTTLYLYRCHLP-PIVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLA 365 (471)
Q Consensus 287 ~~L~~L~l~~n~l~-g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls 365 (471)
++|++|++++|.++ +.+|..+..+ ++|++|++++|.+++. ..++.+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~---------------------~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVGLTSI---------------------ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTC---TTCCEEECTTSCCCCC---------------------TTCCCCTTCCEEECC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhc---CCCcEEECcCCCCCCc---------------------hhhhcCCCCCEEECC
Confidence 45666666666665 5566555555 6666666666655531 334555666666666
Q ss_pred CCcCcccCChhccCCCCCCEEeCcCCcCccc-CcHHhhhccCCCCcCCccEEEcccCcCcccCC---C-CCCCCCCCEEE
Q 041155 366 SNEFEGGVPDFFANMCSLTMLNISDNKLRGH-FPELIQNLSSGCTKNSLEMLYLSSNEITGSVP---D-LGGFSSLKELY 440 (471)
Q Consensus 366 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip---~-~~~l~~L~~L~ 440 (471)
+|++++.+|..+..+++|++|++++|++++. .|..+..++ +|++|++++|.+++..+ . ++.+++|++|+
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE------NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT------TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC------CCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 6666655565555566666666666666642 234555555 56666666666665555 2 55666666666
Q ss_pred Cc
Q 041155 441 LE 442 (471)
Q Consensus 441 Ls 442 (471)
++
T Consensus 147 l~ 148 (149)
T 2je0_A 147 GY 148 (149)
T ss_dssp TB
T ss_pred CC
Confidence 54
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.2e-14 Score=128.71 Aligned_cols=126 Identities=25% Similarity=0.382 Sum_probs=67.4
Q ss_pred cEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccE
Q 041155 336 VLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEM 415 (471)
Q Consensus 336 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~ 415 (471)
+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++ +|++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~ 80 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KLTI 80 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TCCE
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC------ccCE
Confidence 44555555554 344332 24555666666665544344445555566666666655543333344444 5666
Q ss_pred EEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 416 LYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 416 L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
|++++|++++..+. ++.+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 66666665554444 55555666666666665544444445555566666665554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.6e-14 Score=128.57 Aligned_cols=125 Identities=25% Similarity=0.382 Sum_probs=83.7
Q ss_pred cEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccE
Q 041155 336 VLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEM 415 (471)
Q Consensus 336 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~ 415 (471)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..++ +|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~------~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT------QLLT 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT------TCCE
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC------CCCE
Confidence 45666666665 5565442 46777777777776 5666677777777777777777765555566665 6777
Q ss_pred EEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCCEEECcCCCC
Q 041155 416 LYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 416 L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 470 (471)
|+|++|++++..|. +..+++|++|+|++|++++..+..+..+++|+.|+|++|++
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 77777777766665 66777777777777777755555566677777777777764
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2e-15 Score=147.55 Aligned_cols=216 Identities=12% Similarity=0.108 Sum_probs=129.5
Q ss_pred CCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCC----CCCCCcccccCC
Q 041155 235 LSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCH----LPPIVPLSLSNL 310 (471)
Q Consensus 235 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~----l~g~~p~~l~~l 310 (471)
+++|+.|++.+ .+..++. ..+..+++|+.++++.|.+...+ ...+..+.++..+....+. ....-...+.++
T Consensus 100 ~~~L~~l~L~~-~i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~--~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIED-AAFKGCDNLKICQIRKKTAPNLL--PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECT-TTTTTCTTCCEEEBCCSSCCEEC--TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-cccchhH-HHhhcCcccceEEcCCCCccccc--hhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 66777777666 4333322 33566666666666666655432 1344455444444433311 111111122222
Q ss_pred CCCCccc-EEECCCCcC------CCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCC
Q 041155 311 NYSTSLQ-FLELSENNL------TNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSL 383 (471)
Q Consensus 311 ~~~~~L~-~L~Ls~N~l------~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 383 (471)
..|+ .+.+....- .+.+...+++.+.+.++-...........+++|+.+++++|+++..-+..|..+++|
T Consensus 176 ---~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 176 ---EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp ---CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ---cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 3333 233322110 000111144555554432211111111247899999999999985445568999999
Q ss_pred CEEeCcCCcCcccCcHHhhhccCCCCcCCcc-EEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCCCCC
Q 041155 384 TMLNISDNKLRGHFPELIQNLSSGCTKNSLE-MLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMSKLR 461 (471)
Q Consensus 384 ~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~-~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~ 461 (471)
+.+++.+| ++..-+..+..+. +|+ .+++.+ .++..-+. |.+|++|+.+++++|+++..-+..|.++++|+
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCG------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCT------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred CEEECCcc-cceehHHHhhCCh------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 99999998 6644445566666 899 999988 67654455 99999999999999999988888999999999
Q ss_pred EEEC
Q 041155 462 TLSL 465 (471)
Q Consensus 462 ~L~L 465 (471)
.+..
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 9864
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=4.5e-17 Score=147.29 Aligned_cols=146 Identities=27% Similarity=0.363 Sum_probs=98.8
Q ss_pred CCCCCEEEecCCCCCCCCcc------cccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCC
Q 041155 286 LPLLTTLYLYRCHLPPIVPL------SLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSL 359 (471)
Q Consensus 286 l~~L~~L~l~~n~l~g~~p~------~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L 359 (471)
...++.+++..+.++|.+|. .+..+ ++|++|++++|.++ + +| .+..+++|
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l---~~L~~L~ls~n~l~-------------------~-l~-~~~~l~~L 72 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTL---KACKHLALSTNNIE-------------------K-IS-SLSGMENL 72 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHT---TTCSEEECSEEEES-------------------C-CC-CHHHHTTC
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcC---CCCCEEECCCCCCc-------------------c-cc-ccccCCCC
Confidence 34444445555555554443 55555 56666666555544 2 45 66677778
Q ss_pred CEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCC--CCCCCCCCC
Q 041155 360 SFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLK 437 (471)
Q Consensus 360 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip--~~~~l~~L~ 437 (471)
++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++ +|++|++++|++++..+ .+..+++|+
T Consensus 73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~------~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV------NLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH------HSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC------CCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 88888888777 577766667778888888888875 45 566666 78888888888775333 277788888
Q ss_pred EEECcCCcccccCchh----------hhcCCCCCEEE
Q 041155 438 ELYLENNRLNGFTNNS----------IGQMSKLRTLS 464 (471)
Q Consensus 438 ~L~Ls~N~l~g~ip~~----------l~~l~~L~~L~ 464 (471)
+|++++|.+++.+|.. +..+++|+.||
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8888888887776642 67788888876
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=5.2e-14 Score=124.48 Aligned_cols=127 Identities=20% Similarity=0.196 Sum_probs=73.9
Q ss_pred CcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 314 TSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 314 ~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
.+|+.|++++|.++. +|......++|++|++++|++++. ..+..+++|++|++++|++
T Consensus 19 ~~L~~L~l~~n~l~~--------------------i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--------------------IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp TSCEEEECTTSCCCS--------------------CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC
T ss_pred CCceEEEeeCCCCch--------------------hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc
Confidence 566777777766652 232222223666666666666643 4556666666666666666
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCC--CCCCCCCCCEEECcCCcccccCchh----hhcCCCCCEEECcC
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP--DLGGFSSLKELYLENNRLNGFTNNS----IGQMSKLRTLSLNG 467 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~L~Ls~ 467 (471)
++..|..+..++ +|++|++++|+++...+ .++.+++|++|++++|.++. +|.. +..+++|++||+++
T Consensus 77 ~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 77 CRIGEGLDQALP------DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CEECSCHHHHCT------TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEE
T ss_pred cccCcchhhcCC------CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCc
Confidence 643333345555 66666666666643222 25566666666666666653 3432 66666777776666
Q ss_pred CC
Q 041155 468 NS 469 (471)
Q Consensus 468 N~ 469 (471)
|.
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.3e-13 Score=121.31 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=90.0
Q ss_pred cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCc
Q 041155 334 NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSL 413 (471)
Q Consensus 334 ~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L 413 (471)
..+.+++++|.++ .+|..+. ++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..++ +|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT------QL 80 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC------CC
Confidence 3578899999887 4776663 7889999999999987788888899999999999999966665667777 89
Q ss_pred cEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCc
Q 041155 414 EMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTN 451 (471)
Q Consensus 414 ~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip 451 (471)
++|+|++|++++..+. +..+++|++|+|++|.++...+
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999877776 8889999999999998886643
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.1e-13 Score=120.38 Aligned_cols=107 Identities=23% Similarity=0.301 Sum_probs=84.5
Q ss_pred ccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCcc
Q 041155 335 LVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLE 414 (471)
Q Consensus 335 L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~ 414 (471)
-+.+++++|+++ .+|..+. ++|++|+|++|++++..|..+..+++|++|+|++|+|++..+..+..++ +|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~------~L~ 84 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT------QLT 84 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc------hhh
Confidence 367888888885 6777664 7888888888888877788888888888888888888865444456666 788
Q ss_pred EEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccC
Q 041155 415 MLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFT 450 (471)
Q Consensus 415 ~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~i 450 (471)
+|+|++|++++..+. ++.+++|++|+|++|.+....
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888888888876666 888888888888888887543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.1e-13 Score=122.28 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=23.2
Q ss_pred cccCCCCCCEEeCcCCcCcccCChh----ccCCCCCCEEeCcCCcCc
Q 041155 352 AFKHMVSLSFLGLASNEFEGGVPDF----FANMCSLTMLNISDNKLR 394 (471)
Q Consensus 352 ~l~~l~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~ 394 (471)
.+..+++|++|++++|.++ .+|.. +..+++|+.||++.|...
T Consensus 108 ~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 108 PLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 4455555666666666655 34442 555556666666555544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.2e-15 Score=137.79 Aligned_cols=134 Identities=24% Similarity=0.433 Sum_probs=109.9
Q ss_pred CcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcC
Q 041155 314 TSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKL 393 (471)
Q Consensus 314 ~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 393 (471)
..++.++++.+.++|.+|. + ..+|..+..+++|++|++++|++++ +| .+..+++|++|++++|++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~------------l-~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPP------------I-EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp TCCCCTTCSEEECCBCCTT------------C-CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE
T ss_pred ccccCcchheeEeccccCc------------H-hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc
Confidence 4455555555555544332 1 1344589999999999999999996 78 889999999999999999
Q ss_pred cccCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCCCCCEEECcCCcccccCc-hhhhcCCCCCEEECcCCCC
Q 041155 394 RGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFSSLKELYLENNRLNGFTN-NSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 394 ~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l 470 (471)
+ .+|..+..++ +|++|++++|++++ +|.++.+++|++|++++|++++..+ ..+..+++|++|++++|++
T Consensus 83 ~-~l~~~~~~~~------~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 83 K-KIENLDAVAD------TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp C-SCSSHHHHHH------HCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred c-cccchhhcCC------cCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 9 7888888877 89999999999997 4568889999999999999987433 5789999999999999975
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.4e-13 Score=117.88 Aligned_cols=107 Identities=23% Similarity=0.269 Sum_probs=81.7
Q ss_pred cccEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCC
Q 041155 315 SLQFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDN 391 (471)
Q Consensus 315 ~L~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 391 (471)
..+.+++++|.++. +|.. ++++|++++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|+|++|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCc-cCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45678888888775 4432 7888888888888777778888888888888888888655556678888888888888
Q ss_pred cCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCC
Q 041155 392 KLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP 428 (471)
Q Consensus 392 ~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip 428 (471)
++++..+..+..++ +|++|+|++|.++...+
T Consensus 89 ~l~~~~~~~~~~l~------~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLK------SLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCT------TCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCC------CCCEEEeCCCCCCCCch
Confidence 88865555677776 78888888888876544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.2e-12 Score=115.63 Aligned_cols=106 Identities=25% Similarity=0.307 Sum_probs=78.5
Q ss_pred ccEEECCCCcCCCccccc---cccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCc
Q 041155 316 LQFLELSENNLTNSIYPY---NLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNK 392 (471)
Q Consensus 316 L~~L~Ls~N~l~g~ip~~---~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 392 (471)
-+.+++++|.++ .+|.. ++++|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 367888888775 34442 78888888888887777788888888888888888886444456778888888888888
Q ss_pred CcccCcHHhhhccCCCCcCCccEEEcccCcCcccCC
Q 041155 393 LRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVP 428 (471)
Q Consensus 393 l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip 428 (471)
+++..+..+..++ +|++|+|++|.+....+
T Consensus 93 l~~l~~~~~~~l~------~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLK------SLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCT------TCSEEECCSSCBCTTBG
T ss_pred cceeCHHHhcccc------CCCEEEeCCCCcccccc
Confidence 8855444566666 78888888888775433
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=2.4e-13 Score=132.67 Aligned_cols=216 Identities=14% Similarity=0.072 Sum_probs=145.5
Q ss_pred CCCCCeEeCCCCcccCCCCccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccC----CCCCchhhhhCCC
Q 041155 211 LTKLSYLDLSFAEFEGPIPSHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNL----SRSTDWLQVVGNL 286 (471)
Q Consensus 211 l~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l----~~~~~~~~~l~~l 286 (471)
+++|+.|+|.. .++..-+.+|.+|++|+.|++..|.+..++. ..+..+.++..+....+.. .... ...+..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~--~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWE--HFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTT--TSCEEES
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhcccccc--ccccccc
Confidence 99999999998 7774334578999999999999998655443 4467777888887765321 1111 1134455
Q ss_pred CCCC-EEEecCCCCCCCCccccc-CCCCCCcccEEECCCCcCCCccc-----cccccEEEcccccCccCcCccccCCCCC
Q 041155 287 PLLT-TLYLYRCHLPPIVPLSLS-NLNYSTSLQFLELSENNLTNSIY-----PYNLVLLGLDSNLLRGSIPVAFKHMVSL 359 (471)
Q Consensus 287 ~~L~-~L~l~~n~l~g~~p~~l~-~l~~~~~L~~L~Ls~N~l~g~ip-----~~~L~~L~Ls~n~l~g~ip~~l~~l~~L 359 (471)
..|+ .+.+... +.++..+. ......+++.+.+.++-...... ..+|+.+++++|+++..-+..|.++++|
T Consensus 176 ~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred cccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 5666 4444332 22332211 10011455556555432111110 1268888888888775445679999999
Q ss_pred CEEeCcCCcCcccCChhccCCCCCC-EEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCC
Q 041155 360 SFLGLASNEFEGGVPDFFANMCSLT-MLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLK 437 (471)
Q Consensus 360 ~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~ 437 (471)
+.+++.+| ++..-+..|..+++|+ .+++.+ .++..-+..+..+. +|+.++++.|+++..-+. |.++++|+
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~------~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD------NLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT------TEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc------cCCEEEeCCCccCccchhhhcCCcchh
Confidence 99999998 7754456789999999 999988 77744556777777 899999999999976666 99999999
Q ss_pred EEEC
Q 041155 438 ELYL 441 (471)
Q Consensus 438 ~L~L 441 (471)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 9874
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.8e-14 Score=140.62 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=27.8
Q ss_pred ccccCCCCCCEEeCcCCcCccc----CChhccCCCCCCEEeCcCCcCcccCcHHhhh
Q 041155 351 VAFKHMVSLSFLGLASNEFEGG----VPDFFANMCSLTMLNISDNKLRGHFPELIQN 403 (471)
Q Consensus 351 ~~l~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 403 (471)
..+...++|++|+|++|.++.. ++..+...++|++|+|++|.+++.....+..
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 3344455566666666665532 3333444556666666666665544444443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.5e-13 Score=136.39 Aligned_cols=66 Identities=27% Similarity=0.274 Sum_probs=38.2
Q ss_pred CCCCcEEEcCCccCCCCC--chhhhhC-CCCCCCEEEecCCCCCCCCccccc-CCCCCCcccEEECCCCcCCC
Q 041155 260 LSSLTYLDLGSNNLSRST--DWLQVVG-NLPLLTTLYLYRCHLPPIVPLSLS-NLNYSTSLQFLELSENNLTN 328 (471)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~--~~~~~l~-~l~~L~~L~l~~n~l~g~~p~~l~-~l~~~~~L~~L~Ls~N~l~g 328 (471)
++.|++|++++|.++... .+...+. ..++|++|++++|.++......+. .+ ++|+.|+|++|.++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L---~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLGP 140 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH---HTEEEEECCSSCCCH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH---HhccHhhcCCCCCCH
Confidence 356888888888876541 1222333 235777777777776543322222 23 456677777766653
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.1e-11 Score=121.81 Aligned_cols=104 Identities=23% Similarity=0.178 Sum_probs=82.4
Q ss_pred EEEcccc-cCccCcCccccCCCCCCEEeCcC-CcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCcc
Q 041155 337 LLGLDSN-LLRGSIPVAFKHMVSLSFLGLAS-NEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLE 414 (471)
Q Consensus 337 ~L~Ls~n-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~ 414 (471)
.++.+++ +++ .+|. +..+++|++|+|++ |++++..|..|+.+++|+.|+|++|+|++..|..+..++ +|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~------~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP------RLS 83 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS------CCC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc------CCC
Confidence 4677777 777 4777 88888888888886 888876667788888888888888888887777788777 788
Q ss_pred EEEcccCcCcccCCC-CCCCCCCCEEECcCCccccc
Q 041155 415 MLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGF 449 (471)
Q Consensus 415 ~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ 449 (471)
+|+|++|+|++..+. +..++ |+.|+|.+|.+...
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 888888888866655 55555 88888888888743
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3.6e-11 Score=118.00 Aligned_cols=100 Identities=25% Similarity=0.214 Sum_probs=58.1
Q ss_pred EEECCCC-cCCCccccc----cccEEEccc-ccCccCcCccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCC
Q 041155 318 FLELSEN-NLTNSIYPY----NLVLLGLDS-NLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDN 391 (471)
Q Consensus 318 ~L~Ls~N-~l~g~ip~~----~L~~L~Ls~-n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 391 (471)
.++.+++ ++++ +|.. +|+.|+|++ |.+++..|..|+.+++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 5554 3322 466666664 6666555566666666666666666666666666666666666666666
Q ss_pred cCcccCcHHhhhccCCCCcCCccEEEcccCcCcc
Q 041155 392 KLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITG 425 (471)
Q Consensus 392 ~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g 425 (471)
+|++..+..+..+ .|+.|+|.+|.+..
T Consensus 91 ~l~~~~~~~~~~~-------~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGL-------SLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSC-------CCCEEECCSSCCCC
T ss_pred ccceeCHHHcccC-------CceEEEeeCCCccC
Confidence 6664333222222 36666666666653
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.20 E-value=1.2e-09 Score=109.36 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=137.7
Q ss_pred CCCeEeCCCCcccCCCC-ccccCCCCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCE
Q 041155 213 KLSYLDLSFAEFEGPIP-SHLGNLSALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTT 291 (471)
Q Consensus 213 ~L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 291 (471)
+|+.+.+..+ ++ .|+ .+|.+ .+|+.+.+.. .+..++. ..+.++++|+.++++.|.++..+. ..+. +++|+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~--~aF~-~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKE-DIFYYCYNLKKADLSKTKITKLPA--STFV-YAGIEE 207 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECS-STTTTCTTCCEEECTTSCCSEECT--TTTT-TCCCSE
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehH-HHhhCcccCCeeecCCCcceEech--hhEe-ecccCE
Confidence 4666665544 33 222 23334 2466666554 2222111 235556666666666655554422 1222 456666
Q ss_pred EEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCcccc-----ccccEEEcccccCccCcCccccCCCCCCEEeCcC
Q 041155 292 LYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNSIYP-----YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLAS 366 (471)
Q Consensus 292 L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~-----~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~ 366 (471)
+.+..+ +...-...+.++ ++|+.+++..+ ++ .|+. .+|+.+.+. +.++..-+..|.+|++|+.+++.+
T Consensus 208 l~lp~~-l~~I~~~aF~~~---~~L~~l~l~~~-l~-~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 208 VLLPVT-LKEIGSQAFLKT---SQLKTIEIPEN-VS-TIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp EECCTT-CCEECTTTTTTC---TTCCCEECCTT-CC-EECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred EEeCCc-hheehhhHhhCC---CCCCEEecCCC-cc-CccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 666532 333333344444 56666666543 11 1111 156666663 344433356788999999999988
Q ss_pred CcCc-----ccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEE
Q 041155 367 NEFE-----GGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELY 440 (471)
Q Consensus 367 N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~ 440 (471)
|.+. ..-+..|..+++|+.+++. +.++-.-...+..+. +|+.+.+..| ++..-+. +.++ +|+.++
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~------~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNR------KVTQLTIPAN-VTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCC------SCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCC------CccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence 8765 2334568889999999998 446633344555555 8999999655 5544344 8888 999999
Q ss_pred CcCCcccccCchhhhcCC-CCCEEECcCCC
Q 041155 441 LENNRLNGFTNNSIGQMS-KLRTLSLNGNS 469 (471)
Q Consensus 441 Ls~N~l~g~ip~~l~~l~-~L~~L~Ls~N~ 469 (471)
+++|.+....+..+..++ .++.|.+..+.
T Consensus 352 l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 352 VEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 999988766666677774 67888776553
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.06 E-value=5.1e-09 Score=104.71 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=61.6
Q ss_pred CccccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC
Q 041155 350 PVAFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD 429 (471)
Q Consensus 350 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~ 429 (471)
+..|.+|++|+.+++.+ .++..-...|..+++|+.+++..| ++..-+..+..+ +|+.+++.+|.+....+.
T Consensus 293 ~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-------~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-------GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-------CCCEEEECCSSCCBCCCS
T ss_pred HHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-------CCCEEEEcCCCCcccccc
Confidence 45688899999999984 566444566888899999999655 542222233322 699999999987754444
Q ss_pred -CCCCC-CCCEEECcCCccc
Q 041155 430 -LGGFS-SLKELYLENNRLN 447 (471)
Q Consensus 430 -~~~l~-~L~~L~Ls~N~l~ 447 (471)
+..++ .++.|.+-.+.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCCSCTTCCEEEECGGGHH
T ss_pred cccCCCCCccEEEeCHHHHH
Confidence 66664 7888888776543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=1.8e-09 Score=106.20 Aligned_cols=204 Identities=16% Similarity=0.192 Sum_probs=121.7
Q ss_pred CCCCEEEccCCCCCCCCC-------hhhhcCCCCCcEEEcCCccCCC-------CCchhhhhCCCCCCCEEEecCCCCCC
Q 041155 236 SALQHLDLSLNHLFSVGN-------LDWLSHLSSLTYLDLGSNNLSR-------STDWLQVVGNLPLLTTLYLYRCHLPP 301 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~-------~~~l~~l~~L~~L~Ls~n~l~~-------~~~~~~~l~~l~~L~~L~l~~n~l~g 301 (471)
+.++.|.+.......... ...+.++++|+.|.+....... ...+...+..+|+|+.|.+++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 346677776544210111 1124567788888887654321 0123345567788888888776211
Q ss_pred CCcccccCCCCCCcccEEECCCCcCCCccccccccEEEcccccCccCcCcccc--CCCCCCEEeCcC--CcCccc-----
Q 041155 302 IVPLSLSNLNYSTSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFK--HMVSLSFLGLAS--NEFEGG----- 372 (471)
Q Consensus 302 ~~p~~l~~l~~~~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~--~l~~L~~L~Ls~--N~l~g~----- 372 (471)
.++. +. + ++|+.|++..+.++ ......+. .+++|++|+|+. |...|.
T Consensus 186 ~l~~-~~-~---~~L~~L~L~~~~l~-------------------~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 186 SIGK-KP-R---PNLKSLEIISGGLP-------------------DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCCS-CB-C---TTCSEEEEECSBCC-------------------HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred eecc-cc-C---CCCcEEEEecCCCC-------------------hHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 1221 21 2 55666665544433 22222333 688999999863 222221
Q ss_pred CChhc--cCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc----CCC-CCCCCCCCEEECcCCc
Q 041155 373 VPDFF--ANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS----VPD-LGGFSSLKELYLENNR 445 (471)
Q Consensus 373 ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~----ip~-~~~l~~L~~L~Ls~N~ 445 (471)
+...+ ..+++|++|+|++|.+.+..+..+...+ .+++|++|+|+.|.+.+. ++. +..+++|+.|++++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~---~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD---ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS---SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc---cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11222 2478999999999999876666665422 234899999999999874 343 4678899999999998
Q ss_pred ccccCchhhhc-CCCCCEEECcCCC
Q 041155 446 LNGFTNNSIGQ-MSKLRTLSLNGNS 469 (471)
Q Consensus 446 l~g~ip~~l~~-l~~L~~L~Ls~N~ 469 (471)
++...-..+.. + ...++++.++
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 88654444443 3 3567777654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=3.9e-10 Score=111.04 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=48.6
Q ss_pred CcccEEECCCCcCCCccccccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCccc----CChhccCCCCCCEEeCc
Q 041155 314 TSLQFLELSENNLTNSIYPYNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGG----VPDFFANMCSLTMLNIS 389 (471)
Q Consensus 314 ~~L~~L~Ls~N~l~g~ip~~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls 389 (471)
++|+.|++.+|.+.+..+. .+. ....+++|++|+|+.|.+++. ++..+..+++|+.|+++
T Consensus 252 p~Lr~L~L~~~~i~~~~~~---------------~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVE---------------MFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp TTCCEEEEESCTTHHHHHH---------------HHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred CCcCEEeCCCCCCchHHHH---------------HHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 6777777777766532110 000 012356777777777777653 33334456778888888
Q ss_pred CCcCcccCcHHhhhccCCCCcCCccEEEcccCc
Q 041155 390 DNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNE 422 (471)
Q Consensus 390 ~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~ 422 (471)
+|.++...-..+...- ...++++.++
T Consensus 316 ~n~i~d~~~~~l~~al-------g~~~~~~~~~ 341 (362)
T 2ra8_A 316 YNYLSDEMKKELQKSL-------PMKIDVSDSQ 341 (362)
T ss_dssp SBBCCHHHHHHHHHHC-------CSEEECCSBC
T ss_pred CCcCCHHHHHHHHHHc-------CCEEEecCCc
Confidence 7777755444444311 2446776665
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.82 E-value=1.7e-07 Score=93.51 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.0
Q ss_pred CceEEEEeCCCCCCCCCccccc-chhhhCCCCCCEEeCCCCCCCCCCcC-ccCCCCCCCCeEeCCCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTI-SPALLQLHRLTYLDLSLNNFSGSPIP-EFIGSLTKLSYLDLSFA 222 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~i-p~~l~~l~~L~~L~Ls~n~l~g~~ip-~~l~~l~~L~~L~Ls~n 222 (471)
.+|+.+.+.. .++ .| ..+|.++++|+.+++..+ ++ .|+ ..+.++++|+.+.+..+
T Consensus 71 ~~L~~i~lp~------~i~-~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 71 RKVTEIKIPS------TVR-EIGEFAFENCSKLEIINIPDS-VK--MIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp TTEEEEECCT------TCC-EECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCCCCCCTT
T ss_pred CCceEEEeCC------Ccc-CcchhHhhCCCCCcEEEeCCC-ce--EccchhhcccccchhhcccCc
Confidence 4588888764 344 33 346778888999988654 33 132 35667777777766543
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=1.1e-08 Score=90.77 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=76.5
Q ss_pred CccccCCCCCCEEeCcCC-cCccc----CChhccCCCCCCEEeCcCCcCcccCcH----HhhhccCCCCcCCccEEEccc
Q 041155 350 PVAFKHMVSLSFLGLASN-EFEGG----VPDFFANMCSLTMLNISDNKLRGHFPE----LIQNLSSGCTKNSLEMLYLSS 420 (471)
Q Consensus 350 p~~l~~l~~L~~L~Ls~N-~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~l~~~~~~~~L~~L~L~~ 420 (471)
...+...++|++|+|++| .+... +...+...++|++|+|++|.+...... .+...+ +|++|+|++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~------~L~~L~L~~ 102 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN------TLKSLNVES 102 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS------SCCEEECCS
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC------CcCEEECcC
Confidence 344566777888888887 77642 344556667788888888887754332 333333 688888888
Q ss_pred CcCccc----CCC-CCCCCCCCEEEC--cCCccccc----CchhhhcCCCCCEEECcCCCC
Q 041155 421 NEITGS----VPD-LGGFSSLKELYL--ENNRLNGF----TNNSIGQMSKLRTLSLNGNSL 470 (471)
Q Consensus 421 N~l~g~----ip~-~~~l~~L~~L~L--s~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l 470 (471)
|.+... +.. +...+.|++|+| ++|.++.. +...+...++|++|+|++|.+
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 887653 233 566677888888 77888754 334455667888888888764
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=2e-08 Score=94.07 Aligned_cols=79 Identities=30% Similarity=0.461 Sum_probs=45.6
Q ss_pred CCCCCCEEeCcCCcCcc--cCcHHhhhccCCCCcCCccEEEcccCcCcccCCCCCCCC--CCCEEECcCCcccccCch--
Q 041155 379 NMCSLTMLNISDNKLRG--HFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPDLGGFS--SLKELYLENNRLNGFTNN-- 452 (471)
Q Consensus 379 ~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~~~~l~--~L~~L~Ls~N~l~g~ip~-- 452 (471)
++++|+.|+|++|++++ .+|..+..++ +|+.|+|++|++++. ..+..++ +|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~------~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAP------NLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHST------TCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCC------CCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcch
Confidence 45556666666666665 4445555555 566666666666543 1122222 677777777777665552
Q ss_pred -----hhhcCCCCCEEE
Q 041155 453 -----SIGQMSKLRTLS 464 (471)
Q Consensus 453 -----~l~~l~~L~~L~ 464 (471)
.+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 356677777765
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=4.8e-08 Score=86.69 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=8.2
Q ss_pred cCCCCCcEEEcCCc-cCC
Q 041155 258 SHLSSLTYLDLGSN-NLS 274 (471)
Q Consensus 258 ~~l~~L~~L~Ls~n-~l~ 274 (471)
...+.|++|+|++| .+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp TTCTTCCEEECTTCTTCC
T ss_pred hcCCCCCEEEecCCCCCC
Confidence 34445555555554 443
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.45 E-value=3.5e-06 Score=83.79 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=63.7
Q ss_pred cccCCCCCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC--
Q 041155 352 AFKHMVSLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-- 429 (471)
Q Consensus 352 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-- 429 (471)
.+..+.+|+.+.+..+ ++..-...+..+.+|+.+++..+ ++..-...+.++. +|+.+++..+ ++ .|..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~------~L~~i~lp~~-l~-~I~~~a 361 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT------SLSNINFPLS-LR-KIGANA 361 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT------TCCEECCCTT-CC-EECTTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC------CCCEEEECcc-cc-EehHHH
Confidence 4567778888887654 44222445777788888888643 4422234455555 7888888766 54 3443
Q ss_pred CCCCCCCCEEECcCCcccccCchhhhcCCCCCEE
Q 041155 430 LGGFSSLKELYLENNRLNGFTNNSIGQMSKLRTL 463 (471)
Q Consensus 430 ~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 463 (471)
+.+|++|+.+++..+ ++ .+...+.++++|+.+
T Consensus 362 F~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp BTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 888888888888755 22 234567777777654
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=2.9e-05 Score=77.13 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=57.6
Q ss_pred eEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCC---CCCCCc-CccCCCCCCCCeEeCCCCcccCCCCccccCC
Q 041155 160 VIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNN---FSGSPI-PEFIGSLTKLSYLDLSFAEFEGPIPSHLGNL 235 (471)
Q Consensus 160 l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~---l~g~~i-p~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l 235 (471)
|+.+.+.. .++--=..+|.++++|+.+.+..|. ++ .| ...|..+.+|+.+.+..+ ++..-...+..+
T Consensus 66 L~sI~iP~------svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~--~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 66 LTSVQIPD------TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK--KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp CCEEEECT------TCCEECTTTTTTCTTCCEEEEGGGCCCCCC--EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred CEEEEECC------CeeEEhHHHhhCCccCceEeecCCCCCeee--EechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 55556653 3432223467788888888887653 33 12 235667777777766544 331223456677
Q ss_pred CCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCc
Q 041155 236 SALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSN 271 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n 271 (471)
.+|+.+.+..+. ...+ ...+..+..|+.+.+..+
T Consensus 137 ~~L~~i~lp~~~-~~I~-~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 137 EELDTVTIPEGV-TSVA-DGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTCCEEECCTTC-CEEC-TTTTTTCTTCCEEECCTT
T ss_pred ccccccccccee-eeec-ccceecccccccccccce
Confidence 788888876543 1111 123566677777777554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.1e-07 Score=87.09 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=55.8
Q ss_pred cCCCCCCEEeCcCCcCcc--cCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC--
Q 041155 354 KHMVSLSFLGLASNEFEG--GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-- 429 (471)
Q Consensus 354 ~~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-- 429 (471)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+.. + +|++|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~---l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG---L-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT---S-CCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc---C-CcceEEccCCcCccccCcch
Confidence 456778888888888876 5566667777888888888888754 23444431 1 578888888888776662
Q ss_pred ------CCCCCCCCEEE
Q 041155 430 ------LGGFSSLKELY 440 (471)
Q Consensus 430 ------~~~l~~L~~L~ 440 (471)
+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 45677777776
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=0.0003 Score=69.15 Aligned_cols=77 Identities=6% Similarity=0.025 Sum_probs=43.7
Q ss_pred ceEEEEeCCCCCCCCCcccccchhhhCCCCCCEEeCCCCCCCCCCcC-ccCCCCCCCCeEeCCCCcccCCCCccccCCCC
Q 041155 159 HVIKLEIQPIDFGSFPLRGTISPALLQLHRLTYLDLSLNNFSGSPIP-EFIGSLTKLSYLDLSFAEFEGPIPSHLGNLSA 237 (471)
Q Consensus 159 ~l~~L~L~~~~l~~n~l~g~ip~~l~~l~~L~~L~Ls~n~l~g~~ip-~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l~~ 237 (471)
+++.+.+.. .++.--..+|.++++|+.+++..+ ++ .|+ ..|.++ +|+.+.+..+ ++ .|+.......+
T Consensus 47 ~i~~v~ip~------~vt~Ig~~aF~~C~~L~~I~lp~~-v~--~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~~ 114 (379)
T 4h09_A 47 RISEVRVNS------GITSIGEANFNSCYNMTKVTVAST-VT--SIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGTD 114 (379)
T ss_dssp GCSEEEECT------TEEEECTTTTTTCTTCCEEEECTT-CC--EECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTCC
T ss_pred CCEEEEeCC------CccChHHHHhhCCCCCCEEEeCCc-ce--EechhhhcCC-CCceEECCce-ee-EeccceeccCC
Confidence 455566654 444222345778888998888654 44 233 345555 5777766543 33 34433333347
Q ss_pred CCEEEccCCC
Q 041155 238 LQHLDLSLNH 247 (471)
Q Consensus 238 L~~L~L~~n~ 247 (471)
|+.+.+..+-
T Consensus 115 L~~i~lp~~~ 124 (379)
T 4h09_A 115 LDDFEFPGAT 124 (379)
T ss_dssp CSEEECCTTC
T ss_pred cccccCCCcc
Confidence 8888876553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=8.1e-05 Score=73.84 Aligned_cols=284 Identities=14% Similarity=0.153 Sum_probs=142.3
Q ss_pred CceEEEEeCCCCCCCCCccccc-chhhhCCCCCCEEeCCCCCCCCCCcC-ccCCCCCCCCeEeCCCCcccCCCCccccCC
Q 041155 158 GHVIKLEIQPIDFGSFPLRGTI-SPALLQLHRLTYLDLSLNNFSGSPIP-EFIGSLTKLSYLDLSFAEFEGPIPSHLGNL 235 (471)
Q Consensus 158 ~~l~~L~L~~~~l~~n~l~g~i-p~~l~~l~~L~~L~Ls~n~l~g~~ip-~~l~~l~~L~~L~Ls~n~l~g~ip~~l~~l 235 (471)
.+|+.+.+..+.- ..++ .| ..+|.++.+|+.+.+..+ ++. ++ ..+..+.+|+.+.+..+. ...-...+..+
T Consensus 87 ~~L~~i~~~~n~p--~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~--I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c 159 (394)
T 4gt6_A 87 TSLKRVTIQDNKP--SCVK-KIGRQAFMFCSELTDIPILDS-VTE--IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYC 159 (394)
T ss_dssp TTCCEEEEGGGCC--CCCC-EECTTTTTTCTTCCBCGGGTT-CSE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTC
T ss_pred ccCceEeecCCCC--Ceee-EechhhchhcccceeeccCCc-cce--ehhhhhhhhccccccccccee-eeecccceecc
Confidence 3567777654210 0122 22 235667777877766544 331 32 356778888888886542 21223456778
Q ss_pred CCCCEEEccCCCCCCCCChhhhcCCCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccC------
Q 041155 236 SALQHLDLSLNHLFSVGNLDWLSHLSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSN------ 309 (471)
Q Consensus 236 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~------ 309 (471)
.+|+.+.+..+- ...+. ..+. ..+|+.+.+..+...-. ...+..+.+++............--..+..
T Consensus 160 ~~L~~i~~~~~~-~~I~~-~aF~-~~~l~~i~ip~~~~~i~---~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T 4gt6_A 160 YSLHTVTLPDSV-TAIEE-RAFT-GTALTQIHIPAKVTRIG---TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDY 233 (394)
T ss_dssp TTCCEEECCTTC-CEECT-TTTT-TCCCSEEEECTTCCEEC---TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE
T ss_pred ccccccccccee-eEecc-cccc-ccceeEEEECCcccccc---cchhhhccccceecccccccccccceeecccccccc
Confidence 888888887653 22221 1132 35677777765432211 124566677776665544332110000000
Q ss_pred ----CCCCCcccEEECCCCcCCCcccc------ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccC
Q 041155 310 ----LNYSTSLQFLELSENNLTNSIYP------YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFAN 379 (471)
Q Consensus 310 ----l~~~~~L~~L~Ls~N~l~g~ip~------~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 379 (471)
......+..+.+... ++ .+.. ..|+.+.+..+..+ .-...+.++..|+.+.+. +.++..-...|..
T Consensus 234 ~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~ 309 (394)
T 4gt6_A 234 ALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG 309 (394)
T ss_dssp EEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT
T ss_pred cccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecC
Confidence 000012222222110 00 0000 04555555433221 223456677888888886 3444223345677
Q ss_pred CCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC--CCCCCCCCEEECcCCcccccCchhhhcC
Q 041155 380 MCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD--LGGFSSLKELYLENNRLNGFTNNSIGQM 457 (471)
Q Consensus 380 l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~--~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 457 (471)
+.+|+.+++..+ ++..-...+..+. +|+.+.+..+ ++ .|.. +.+|++|+.+++.++.... ..+..+
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~------~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~ 377 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCE------QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTD 377 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCT------TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCC
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCC------CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhcc
Confidence 788888888654 4422233455555 7888888654 44 4554 7888888888888775432 356677
Q ss_pred CCCCEEECcCCCC
Q 041155 458 SKLRTLSLNGNSL 470 (471)
Q Consensus 458 ~~L~~L~Ls~N~l 470 (471)
..|+.+.+..|.+
T Consensus 378 ~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 378 SGLQNLPVAPGSI 390 (394)
T ss_dssp CCC----------
T ss_pred CCCCEEEeCCCCE
Confidence 7788887776643
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.6e-05 Score=69.17 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=17.6
Q ss_pred CCCEEeCCCCCCCCCCcCccCCCCCCCCeEeCCCC
Q 041155 188 RLTYLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFA 222 (471)
Q Consensus 188 ~L~~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n 222 (471)
.|++||++++.++.. --..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCC
Confidence 456666666655543 1223445555555555555
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=3.3e-05 Score=67.12 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCCEEeCcCCcCcccCChhccCCCCCCEEeCcCCc-CcccCcHHhhhccCCCCcCCccEEEcccCc-CcccCCC-CCCCC
Q 041155 358 SLSFLGLASNEFEGGVPDFFANMCSLTMLNISDNK-LRGHFPELIQNLSSGCTKNSLEMLYLSSNE-ITGSVPD-LGGFS 434 (471)
Q Consensus 358 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~-l~g~ip~-~~~l~ 434 (471)
.|++||++++.++..--..+..+++|+.|+|++|. +++.--..++.+.. ..++|++|+|++|. ++..--. +..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~--~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN--LQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH--HHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc--ccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34444444444443333334445555555555552 44333233332100 00135555555553 4432112 44556
Q ss_pred CCCEEECcCC
Q 041155 435 SLKELYLENN 444 (471)
Q Consensus 435 ~L~~L~Ls~N 444 (471)
+|++|+++++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 6666666655
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.007 Score=59.24 Aligned_cols=260 Identities=15% Similarity=0.112 Sum_probs=142.6
Q ss_pred hhhCCCCCCEEeCCCCCCCCCCcC-ccCCCCCCCCeEeCCCCcccCCCC-ccccCCCCCCEEEccCCCCCCCCChhhhcC
Q 041155 182 ALLQLHRLTYLDLSLNNFSGSPIP-EFIGSLTKLSYLDLSFAEFEGPIP-SHLGNLSALQHLDLSLNHLFSVGNLDWLSH 259 (471)
Q Consensus 182 ~l~~l~~L~~L~Ls~n~l~g~~ip-~~l~~l~~L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~ 259 (471)
++....+|+.+.+... ++ .|+ ..|.++.+|+.++|..+ ++ .|+ .+|.++ +|+.+.+..+- ...+. ..+..
T Consensus 41 ~~~~~~~i~~v~ip~~-vt--~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~l-~~I~~-~aF~~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT--SIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMERV-KKFGD-YVFQG 112 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE--EECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTTC-CEECT-TTTTT
T ss_pred ccccccCCEEEEeCCC-cc--ChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCcee-eEecc-ceecc
Confidence 3455677888887643 43 243 46889999999999754 55 344 456665 68888776542 22221 12333
Q ss_pred CCCCcEEEcCCccCCCCCchhhhhCCCCCCCEEEecCCCCCCCCcccccCCCCCCcccEEECCCCcCCCc----------
Q 041155 260 LSSLTYLDLGSNNLSRSTDWLQVVGNLPLLTTLYLYRCHLPPIVPLSLSNLNYSTSLQFLELSENNLTNS---------- 329 (471)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~g~~p~~l~~l~~~~~L~~L~Ls~N~l~g~---------- 329 (471)
.+|+.+.+..+...-.. ..+.++ +++.+.+..+ ++..-...+... ..++.+.+..+.....
T Consensus 113 -~~L~~i~lp~~~~~i~~---~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~ 183 (379)
T 4h09_A 113 -TDLDDFEFPGATTEIGN---YIFYNS-SVKRIVIPKS-VTTIKDGIGYKA---ENLEKIEVSSNNKNYVAENYVLYNKN 183 (379)
T ss_dssp -CCCSEEECCTTCCEECT---TTTTTC-CCCEEEECTT-CCEECSCTTTTC---TTCCEEEECTTCSSEEEETTEEEETT
T ss_pred -CCcccccCCCccccccc---cccccc-eeeeeeccce-eeccccchhccc---ccccccccccccceeecccceecccc
Confidence 47888888654221110 122222 3444443322 111111122222 3444443332211100
Q ss_pred -----------------ccc-------------ccccEEEcccccCccCcCccccCCCCCCEEeCcCCcCcccCChhccC
Q 041155 330 -----------------IYP-------------YNLVLLGLDSNLLRGSIPVAFKHMVSLSFLGLASNEFEGGVPDFFAN 379 (471)
Q Consensus 330 -----------------ip~-------------~~L~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 379 (471)
+|. .+++.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~ 261 (379)
T 4h09_A 184 KTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN 261 (379)
T ss_dssp SSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT
T ss_pred cceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce
Confidence 000 03444444332 22122334566777888777654 44223445667
Q ss_pred CCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcccccCchhhhcCC
Q 041155 380 MCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRLNGFTNNSIGQMS 458 (471)
Q Consensus 380 l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 458 (471)
+.+|+.+.+..+ +...-...+..+. +|+.+.+.++.++..-.. +.+|.+|+.++|..+ ++..-..+|.+|.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCS------NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCT------TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eehhcccccccc-ceecccccccccc------ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 778888887543 3322223344455 899999988887744444 899999999999754 5544455788899
Q ss_pred CCCEEECcCC
Q 041155 459 KLRTLSLNGN 468 (471)
Q Consensus 459 ~L~~L~Ls~N 468 (471)
+|+.+.+..+
T Consensus 334 ~L~~i~ip~~ 343 (379)
T 4h09_A 334 ALSTISYPKS 343 (379)
T ss_dssp TCCCCCCCTT
T ss_pred CCCEEEECCc
Confidence 9998887543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.0002 Score=63.34 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=50.9
Q ss_pred CCCCCCEEeCcCC-cCcc----cCChhccCCCCCCEEeCcCCcCcccCcHHhhhccCCCCcCCccEEEcccCcCccc---
Q 041155 355 HMVSLSFLGLASN-EFEG----GVPDFFANMCSLTMLNISDNKLRGHFPELIQNLSSGCTKNSLEMLYLSSNEITGS--- 426 (471)
Q Consensus 355 ~l~~L~~L~Ls~N-~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~--- 426 (471)
+-+.|++|+|++| ++.. .+.+.+..-+.|+.|+|++|++.......++..- ...+.|++|+|++|.+...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL--~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI--ETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH--HHCSSCCEEECCSSBCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH--hcCCccCeEecCCCcCCHHHHH
Confidence 3445555555553 4432 1333344445566666666655533222222110 0011566666666655432
Q ss_pred -CCC-CCCCCCCCEEECcCC---ccccc----CchhhhcCCCCCEEECcCC
Q 041155 427 -VPD-LGGFSSLKELYLENN---RLNGF----TNNSIGQMSKLRTLSLNGN 468 (471)
Q Consensus 427 -ip~-~~~l~~L~~L~Ls~N---~l~g~----ip~~l~~l~~L~~L~Ls~N 468 (471)
+-. +..-+.|++|+|++| .+... +-..+..-+.|+.|+++.|
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 111 334445666666543 22221 2333445556666666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00019 Score=63.51 Aligned_cols=42 Identities=10% Similarity=0.171 Sum_probs=19.4
Q ss_pred CCCCCcEEEcCCc-cCCCC--CchhhhhCCCCCCCEEEecCCCCC
Q 041155 259 HLSSLTYLDLGSN-NLSRS--TDWLQVVGNLPLLTTLYLYRCHLP 300 (471)
Q Consensus 259 ~l~~L~~L~Ls~n-~l~~~--~~~~~~l~~l~~L~~L~l~~n~l~ 300 (471)
+-+.|++|+|++| .+... ..+...+..-+.|+.|+|++|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 3345555555553 33321 123334444455555555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0047 Score=50.71 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=28.7
Q ss_pred EEeCcCCcCc-ccCcHHhhhccCCCCcCCccEEEcccCcCcccCCC-CCCCCCCCEEECcCCcc
Q 041155 385 MLNISDNKLR-GHFPELIQNLSSGCTKNSLEMLYLSSNEITGSVPD-LGGFSSLKELYLENNRL 446 (471)
Q Consensus 385 ~L~Ls~N~l~-g~ip~~l~~l~~~~~~~~L~~L~L~~N~l~g~ip~-~~~l~~L~~L~Ls~N~l 446 (471)
.++-+++.++ ..+|..+ + .+|++|+|++|+|+...+. +..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---P-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---C-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---C-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5556666654 2444322 1 1466666666666543333 55556666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.54 E-value=0.032 Score=45.61 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=31.0
Q ss_pred EEeCCCCCCCCCCcCccCCCCCCCCeEeCCCCcccCCCC-ccccCCCCCCEEEccCCC
Q 041155 191 YLDLSLNNFSGSPIPEFIGSLTKLSYLDLSFAEFEGPIP-SHLGNLSALQHLDLSLNH 247 (471)
Q Consensus 191 ~L~Ls~n~l~g~~ip~~l~~l~~L~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~L~~n~ 247 (471)
.++.+++.++-..+|..+. ++|++|+|++|+|+ .+| ..|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCC
Confidence 5666666665111554432 35677777777776 343 334556666666666665
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=43.45 E-value=5.5 Score=20.41 Aligned_cols=9 Identities=33% Similarity=1.250 Sum_probs=7.1
Q ss_pred CCcccccee
Q 041155 37 DCCKWTGVG 45 (471)
Q Consensus 37 ~~C~W~GV~ 45 (471)
.-|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 369999975
Done!