Query 041158
Match_columns 118
No_of_seqs 110 out of 1022
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 06:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 7.2E-40 2.4E-44 234.9 7.2 112 7-118 29-142 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 6.2E-40 2.1E-44 231.1 6.0 109 10-118 5-114 (176)
3 3h16_A TIR protein; bacteria T 100.0 1.2E-35 4.1E-40 204.8 5.2 110 8-118 15-125 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3.2E-30 1.1E-34 176.8 2.2 107 7-115 4-113 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.8E-28 6E-33 168.4 1.6 103 10-114 2-110 (149)
6 2js7_A Myeloid differentiation 99.9 5.7E-28 1.9E-32 167.7 3.5 102 8-111 11-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 1.7E-27 5.6E-32 168.0 3.4 104 8-113 30-139 (178)
8 1t3g_A X-linked interleukin-1 99.9 8.3E-27 2.8E-31 161.7 6.8 100 12-111 1-114 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 2.8E-21 9.7E-26 160.3 5.9 101 9-111 666-774 (844)
10 1eiw_A Hypothetical protein MT 98.6 4.4E-08 1.5E-12 63.8 4.0 73 12-107 3-75 (111)
11 3hyn_A Putative signal transdu 97.5 0.00031 1.1E-08 49.2 6.9 91 13-108 5-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 96.3 0.027 9.4E-07 38.4 8.3 75 27-105 26-104 (161)
13 2khz_A C-MYC-responsive protei 94.1 0.37 1.3E-05 32.5 8.2 88 10-105 8-109 (165)
14 3ehd_A Uncharacterized conserv 91.6 1.2 4.2E-05 30.1 7.9 75 27-106 19-104 (162)
15 4fyk_A Deoxyribonucleoside 5'- 91.4 1.2 3.9E-05 30.0 7.5 71 28-106 19-101 (152)
16 1s2d_A Purine trans deoxyribos 89.4 2.3 7.9E-05 28.8 7.7 74 27-105 22-115 (167)
17 1f8y_A Nucleoside 2-deoxyribos 82.0 5.5 0.00019 26.6 6.6 75 27-106 18-113 (157)
18 2yvq_A Carbamoyl-phosphate syn 76.9 13 0.00043 24.2 7.0 62 16-79 27-107 (143)
19 1byr_A Protein (endonuclease); 71.7 16 0.00055 23.1 6.5 35 29-64 15-50 (155)
20 2jug_A TUBC protein; docking d 67.8 3.6 0.00012 24.0 2.4 37 30-66 7-47 (78)
21 1evl_A Threonyl-tRNA synthetas 61.0 18 0.00061 27.2 5.7 61 12-76 297-357 (401)
22 1sc3_B Interleukin-1 beta conv 59.9 2.3 7.8E-05 25.7 0.4 25 17-41 21-45 (88)
23 1qtn_B Caspase-8; apoptosis, d 59.4 1.5 5E-05 27.0 -0.6 29 13-41 12-49 (95)
24 4g85_A Histidine-tRNA ligase, 58.7 23 0.00079 27.6 6.1 63 11-76 417-479 (517)
25 2ql9_B Caspase-7; cysteine pro 58.4 2.6 8.9E-05 25.8 0.5 24 18-41 24-47 (97)
26 3aon_B V-type sodium ATPase su 57.1 11 0.00037 23.9 3.3 50 35-90 15-64 (115)
27 3net_A Histidyl-tRNA synthetas 57.0 15 0.00053 28.4 4.8 63 11-77 369-431 (465)
28 1wu7_A Histidyl-tRNA synthetas 54.7 16 0.00054 27.8 4.4 59 13-76 332-391 (434)
29 2dko_B Caspase-3; low barrier 54.2 3.4 0.00011 25.7 0.5 28 14-41 17-53 (103)
30 4g84_A Histidine--tRNA ligase, 53.8 24 0.00083 26.8 5.4 62 12-76 365-426 (464)
31 1pyo_B Caspase-2; apoptosis, c 53.5 3.5 0.00012 25.7 0.5 24 18-41 28-51 (105)
32 3lc0_A Histidyl-tRNA synthetas 53.4 31 0.0011 26.7 6.0 61 12-76 360-420 (456)
33 2i4l_A Proline-tRNA ligase; al 52.0 14 0.00049 28.5 3.9 44 12-55 364-410 (458)
34 2d00_A V-type ATP synthase sub 51.3 41 0.0014 20.8 6.0 44 34-80 15-58 (109)
35 1v95_A Nuclear receptor coacti 50.3 49 0.0017 21.4 7.1 58 13-73 8-67 (130)
36 1qe0_A Histidyl-tRNA synthetas 49.3 19 0.00064 27.1 4.1 62 11-76 327-388 (420)
37 1nj1_A PROR, proline-tRNA synt 47.5 17 0.00058 28.6 3.7 45 12-56 313-362 (501)
38 4e51_A Histidine--tRNA ligase; 47.5 23 0.00079 27.5 4.4 64 12-76 353-417 (467)
39 3ftb_A Histidinol-phosphate am 47.4 64 0.0022 22.8 6.6 62 36-99 114-177 (361)
40 2pw6_A Uncharacterized protein 46.4 26 0.00089 25.3 4.3 69 27-97 95-164 (271)
41 3rjm_B Caspase-2; caspase-2, c 45.7 3.5 0.00012 26.3 -0.5 29 13-41 15-52 (117)
42 3ikl_A DNA polymerase subunit 45.6 73 0.0025 24.9 6.9 65 12-78 347-415 (459)
43 3l4e_A Uncharacterized peptida 45.6 57 0.002 22.3 5.8 57 13-72 28-85 (206)
44 2xzd_B Caspase-3; hydrolase-pr 45.4 5.3 0.00018 25.5 0.4 24 18-41 29-52 (118)
45 1qf6_A THRRS, threonyl-tRNA sy 44.5 51 0.0017 26.7 6.1 63 12-78 538-600 (642)
46 1htt_A Histidyl-tRNA synthetas 44.1 20 0.0007 27.0 3.6 60 12-76 326-388 (423)
47 3hjn_A DTMP kinase, thymidylat 43.5 43 0.0015 22.5 4.8 31 17-47 2-34 (197)
48 2j3l_A Prolyl-tRNA synthetase; 41.9 52 0.0018 25.9 5.8 63 12-77 469-533 (572)
49 1nyr_A Threonyl-tRNA synthetas 41.8 35 0.0012 27.5 4.8 61 12-76 544-605 (645)
50 1bax_A M-PMV MA, M-PMV matrix 40.1 13 0.00046 22.9 1.6 18 27-44 9-26 (94)
51 2zt5_A Glycyl-tRNA synthetase; 39.1 67 0.0023 26.4 6.1 62 13-77 559-621 (693)
52 1ati_A Glycyl-tRNA synthetase; 37.3 40 0.0014 26.4 4.4 62 12-77 397-461 (505)
53 3sm9_A Mglur3, metabotropic gl 36.9 29 0.00099 26.6 3.4 53 16-68 188-243 (479)
54 2p5s_A RAS and EF-hand domain 36.9 69 0.0024 20.7 5.0 27 52-78 85-112 (199)
55 2i2x_B MTAC, methyltransferase 36.8 94 0.0032 21.8 6.0 86 15-110 125-212 (258)
56 2efe_B Small GTP-binding prote 36.0 57 0.0019 20.4 4.4 26 52-77 69-95 (181)
57 2h1v_A Ferrochelatase; rossman 35.2 52 0.0018 24.0 4.5 62 29-92 63-133 (310)
58 4a8j_B Elongator complex prote 34.8 1.1E+02 0.0036 22.4 5.9 67 41-111 68-140 (270)
59 2hfv_A Hypothetical protein RP 32.6 34 0.0012 21.0 2.6 33 15-49 22-54 (97)
60 1z0j_A RAB-22, RAS-related pro 32.6 50 0.0017 20.3 3.6 24 55-78 67-90 (170)
61 4h3d_A 3-dehydroquinate dehydr 32.5 83 0.0028 22.3 5.1 64 35-99 106-169 (258)
62 2lpy_A Matrix protein P10; GAG 32.4 21 0.00071 23.1 1.6 18 27-44 8-25 (124)
63 2i4r_A V-type ATP synthase sub 31.7 42 0.0014 20.6 3.0 44 35-80 22-65 (102)
64 1r2q_A RAS-related protein RAB 31.5 61 0.0021 19.8 3.9 27 52-78 63-90 (170)
65 3h5l_A Putative branched-chain 31.4 65 0.0022 23.5 4.5 54 15-69 166-220 (419)
66 3s83_A Ggdef family protein; s 30.7 1.3E+02 0.0044 20.6 6.2 64 35-103 146-213 (259)
67 3pid_A UDP-glucose 6-dehydroge 30.3 46 0.0016 25.7 3.6 50 23-72 347-401 (432)
68 2a5l_A Trp repressor binding p 30.2 88 0.003 20.3 4.7 64 27-93 20-95 (200)
69 3czq_A Putative polyphosphate 30.2 1.6E+02 0.0056 21.6 6.4 98 15-113 86-203 (304)
70 1hc7_A Prolyl-tRNA synthetase; 29.8 96 0.0033 24.1 5.4 38 12-49 286-327 (477)
71 1jdp_A NPR-C, atrial natriuret 29.7 79 0.0027 23.3 4.8 58 16-73 157-218 (441)
72 3ks9_A Mglur1, metabotropic gl 29.6 53 0.0018 25.2 3.8 51 16-66 200-252 (496)
73 2fcj_A Small toprim domain pro 29.3 15 0.00052 23.5 0.6 63 29-94 40-103 (119)
74 3kbq_A Protein TA0487; structu 29.0 53 0.0018 22.0 3.4 46 28-73 23-69 (172)
75 4f21_A Carboxylesterase/phosph 28.5 1.2E+02 0.0041 20.8 5.3 33 14-46 184-218 (246)
76 3mwd_B ATP-citrate synthase; A 28.4 1.7E+02 0.0057 21.7 6.3 46 33-80 70-117 (334)
77 1ydg_A Trp repressor binding p 28.1 38 0.0013 22.5 2.6 54 27-81 21-92 (211)
78 2hup_A RAS-related protein RAB 27.5 1E+02 0.0035 20.0 4.6 27 52-78 86-113 (201)
79 1svv_A Threonine aldolase; str 27.3 1.3E+02 0.0043 21.0 5.3 43 57-99 128-177 (359)
80 1g5h_A Mitochondrial DNA polym 27.2 74 0.0025 24.6 4.3 65 10-76 335-403 (454)
81 4h0c_A Phospholipase/carboxyle 27.0 1.2E+02 0.0042 20.0 5.0 34 13-46 151-186 (210)
82 3u5e_c L32, RP73, YL38, 60S ri 26.9 72 0.0025 19.3 3.5 33 58-92 28-60 (105)
83 3uh0_A Threonyl-tRNA synthetas 26.8 99 0.0034 23.9 5.0 61 12-76 344-421 (460)
84 1egw_A MADS box transcription 26.6 20 0.00067 21.1 0.7 32 63-94 36-67 (77)
85 3n0x_A Possible substrate bind 26.6 95 0.0032 22.2 4.6 53 15-68 143-196 (374)
86 2q62_A ARSH; alpha/beta, flavo 26.5 1.7E+02 0.0057 20.5 7.0 63 28-93 52-122 (247)
87 1v0w_A Phospholipase D; hydrol 25.8 1.5E+02 0.005 22.9 5.8 56 53-108 64-120 (506)
88 4hvc_A Bifunctional glutamate/ 25.8 28 0.00094 27.7 1.6 51 9-59 304-365 (519)
89 4ggj_A Mitochondrial cardiolip 25.5 1.5E+02 0.0052 19.7 6.4 26 50-75 41-66 (196)
90 3h6g_A Glutamate receptor, ion 25.3 1.1E+02 0.0037 22.1 4.7 39 29-68 153-191 (395)
91 1h4v_B Histidyl-tRNA synthetas 25.2 1.6E+02 0.0053 22.0 5.7 61 12-77 327-387 (421)
92 3ojo_A CAP5O; rossmann fold, c 25.1 80 0.0028 24.3 4.1 52 23-75 330-383 (431)
93 2e4u_A Metabotropic glutamate 25.0 87 0.003 24.2 4.4 36 16-51 189-224 (555)
94 1zbd_A Rabphilin-3A; G protein 24.9 1.1E+02 0.0038 19.6 4.4 24 55-78 69-92 (203)
95 3a32_A Probable threonyl-tRNA 24.8 26 0.0009 27.1 1.3 36 13-48 338-378 (471)
96 3pzy_A MOG; ssgcid, seattle st 24.3 53 0.0018 21.6 2.6 45 28-72 27-72 (164)
97 3clv_A RAB5 protein, putative; 24.1 1.4E+02 0.0047 18.7 5.4 27 52-78 101-128 (208)
98 3fdb_A Beta C-S lyase, putativ 23.9 1.9E+02 0.0066 20.3 5.9 43 57-99 140-183 (377)
99 4f3h_A Fimxeal, putative uncha 23.0 1.6E+02 0.0054 20.0 5.1 40 35-79 150-189 (250)
100 1dlj_A UDP-glucose dehydrogena 22.9 1.2E+02 0.004 22.8 4.6 50 23-72 324-379 (402)
101 3nra_A Aspartate aminotransfer 22.9 1.6E+02 0.0056 20.9 5.4 43 57-99 169-212 (407)
102 3hly_A Flavodoxin-like domain; 22.9 1.5E+02 0.0052 18.8 9.0 50 27-80 15-64 (161)
103 2is8_A Molybdopterin biosynthe 22.7 84 0.0029 20.5 3.4 44 28-71 21-67 (164)
104 3b6i_A Flavoprotein WRBA; flav 22.7 87 0.003 20.3 3.5 52 27-81 16-82 (198)
105 3p57_A Myocyte-specific enhanc 22.7 33 0.0011 20.8 1.2 32 63-94 36-67 (90)
106 4fhz_A Phospholipase/carboxyle 22.6 1.6E+02 0.0055 20.7 5.1 33 14-46 206-240 (285)
107 4a7p_A UDP-glucose dehydrogena 22.4 82 0.0028 24.3 3.7 61 23-83 337-406 (446)
108 2bon_A Lipid kinase; DAG kinas 22.2 2.1E+02 0.0073 20.6 5.8 34 13-48 31-64 (332)
109 1sff_A 4-aminobutyrate aminotr 22.1 1.8E+02 0.0062 21.0 5.5 42 58-99 185-233 (426)
110 4hde_A SCO1/SENC family lipopr 22.0 1.6E+02 0.0055 18.7 5.8 44 68-112 33-79 (170)
111 3t18_A Aminotransferase class 22.0 2.3E+02 0.0077 20.4 6.7 39 58-96 164-209 (413)
112 3t1o_A Gliding protein MGLA; G 21.9 1.3E+02 0.0046 18.7 4.3 23 55-77 86-108 (198)
113 3en0_A Cyanophycinase; serine 21.8 1.1E+02 0.0039 22.1 4.2 55 16-72 60-116 (291)
114 3kg2_A Glutamate receptor 2; I 21.6 1.3E+02 0.0046 24.1 5.0 51 16-68 124-179 (823)
115 3i4j_A Aminotransferase, class 21.5 1E+02 0.0036 22.5 4.1 42 58-99 177-225 (430)
116 4evq_A Putative ABC transporte 21.4 2.2E+02 0.0074 20.0 6.0 40 28-68 166-206 (375)
117 1h1j_S THO1 protein; SAP domai 21.4 41 0.0014 18.1 1.3 15 30-44 10-24 (51)
118 4dq6_A Putative pyridoxal phos 21.3 1.5E+02 0.0053 20.9 4.9 41 58-99 156-197 (391)
119 3g0t_A Putative aminotransfera 21.2 2.1E+02 0.0073 20.6 5.7 43 58-100 172-216 (437)
120 1yaa_A Aspartate aminotransfer 21.2 2.3E+02 0.008 20.3 5.9 42 58-99 164-209 (412)
121 3kax_A Aminotransferase, class 20.8 1.7E+02 0.0059 20.6 5.0 42 58-99 147-189 (383)
122 3rq1_A Aminotransferase class 20.5 2.4E+02 0.0084 20.2 7.4 39 58-96 165-210 (418)
123 2f5t_X Archaeal transcriptiona 20.2 2.3E+02 0.0078 19.8 6.1 52 52-108 7-58 (233)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=7.2e-40 Score=234.86 Aligned_cols=112 Identities=46% Similarity=0.721 Sum_probs=103.1
Q ss_pred CCCCCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhH
Q 041158 7 SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCL 85 (118)
Q Consensus 7 ~~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~ 85 (118)
+..+.++|||||||+++|+++.|+.+|+++|+++|+++|+|++ +++|+.+.++|.+||++|+++|+|+|++|+.|.||+
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 5567899999999999999889999999999999999999987 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh-CCCEEEEEEeecCCCCcccCC
Q 041158 86 DELLKILECKHV-YGQIVIPVFCRVDPSHVRWQT 118 (118)
Q Consensus 86 ~El~~~~~~~~~-~~~~iiPI~~~v~p~~v~~q~ 118 (118)
+||..|++|.++ ++++||||||+++|++||.|+
T Consensus 109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~ 142 (204)
T 3ozi_A 109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT 142 (204)
T ss_dssp HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc
Confidence 999999999875 689999999999999999985
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=6.2e-40 Score=231.07 Aligned_cols=109 Identities=46% Similarity=0.846 Sum_probs=91.1
Q ss_pred CCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHH
Q 041158 10 NSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDEL 88 (118)
Q Consensus 10 ~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El 88 (118)
+.+.|||||||+++|+++.|+.+|+++|+++|+++|+|++ +++|+.+.++|.+||++|+++|+|+|++|++|.||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 5689999999999999889999999999999999999987 999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCCEEEEEEeecCCCCcccCC
Q 041158 89 LKILECKHVYGQIVIPVFCRVDPSHVRWQT 118 (118)
Q Consensus 89 ~~~~~~~~~~~~~iiPI~~~v~p~~v~~q~ 118 (118)
..++++.++++++||||||+++|++|+.|+
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~ 114 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhcc
Confidence 999999988999999999999999999985
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=1.2e-35 Score=204.83 Aligned_cols=110 Identities=22% Similarity=0.383 Sum_probs=101.5
Q ss_pred CCCCCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHH
Q 041158 8 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLD 86 (118)
Q Consensus 8 ~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~ 86 (118)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+||+|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35678999999999999 457999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCEEEEEEeecCCCCcccCC
Q 041158 87 ELLKILECKHVYGQIVIPVFCRVDPSHVRWQT 118 (118)
Q Consensus 87 El~~~~~~~~~~~~~iiPI~~~v~p~~v~~q~ 118 (118)
|+..++++..+++.+||||||+++|++|++|+
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~ 125 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCC
Confidence 99999987777788999999999999999874
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=3.2e-30 Score=176.77 Aligned_cols=107 Identities=18% Similarity=0.281 Sum_probs=81.5
Q ss_pred CCCCCCeeeEEEEeeeccCccchHHHHHHHHcc--CCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchh
Q 041158 7 SPRNSNKHGIFLSFRGEDTRDNFTSHLYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW 83 (118)
Q Consensus 7 ~~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~--~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~w 83 (118)
|+..++.|||||||+++|. .||.+|..+|++ .|+++|++++ +.+|+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 4667889999999999996 589999999998 5999999887 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhCCCEEEEEEeecCCCCcc
Q 041158 84 CLDELLKILECKHVYGQIVIPVFCRVDPSHVR 115 (118)
Q Consensus 84 c~~El~~~~~~~~~~~~~iiPI~~~v~p~~v~ 115 (118)
|..|+..|+.+......++|||+++++++++.
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp 113 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence 99999999987633344788999988866654
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.94 E-value=1.8e-28 Score=168.37 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=91.1
Q ss_pred CCCeeeEEEEeeeccCccchHHH-HHHHHccC--CcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhH
Q 041158 10 NSNKHGIFLSFRGEDTRDNFTSH-LYSALCHN--NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCL 85 (118)
Q Consensus 10 ~~~~~dVFISys~~D~~~~fv~~-L~~~L~~~--Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~ 85 (118)
+++.|||||||+++|. .||.+ |...|++. |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4679999999999996 79986 99999986 999999987 999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhhhCCCEEEEEEee-cCCCCc
Q 041158 86 DELLKILE-CKHVYGQIVIPVFCR-VDPSHV 114 (118)
Q Consensus 86 ~El~~~~~-~~~~~~~~iiPI~~~-v~p~~v 114 (118)
.|+..|+. +.++++.+||||+|+ +.+.++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 99999875 334567789999995 555444
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.94 E-value=5.7e-28 Score=167.73 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=90.3
Q ss_pred CCCCCeeeEEEEeeeccCccchHHHHHHHHccC--CcceEEeCC-CCCCccchHHHHHHHH-hcCeEEEEecCCccCchh
Q 041158 8 PRNSNKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDND-LKRGDEISQSLLDTIE-ASTISIIIFSERYASSGW 83 (118)
Q Consensus 8 ~~~~~~~dVFISys~~D~~~~fv~~L~~~L~~~--Gi~v~~d~~-~~~G~~~~~~i~~~i~-~s~~~I~v~S~~~~~S~w 83 (118)
...++.|||||||+++|. .||.+|..+|++. |+++|+|++ +.+|+.+.++|.++|+ +|+.+|+|+||+|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 445689999999999994 7999999999984 699999887 9999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhh-hhCCCEEEEEEeecCC
Q 041158 84 CLDELLKILECK-HVYGQIVIPVFCRVDP 111 (118)
Q Consensus 84 c~~El~~~~~~~-~~~~~~iiPI~~~v~p 111 (118)
|..|+..|+.+. .+++.+||||+|+..+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999999864 3345689999997654
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=1.7e-27 Score=168.00 Aligned_cols=104 Identities=19% Similarity=0.324 Sum_probs=87.6
Q ss_pred CCCCCeeeEEEEeeeccCccchHHH-HHHHHcc--CCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchh
Q 041158 8 PRNSNKHGIFLSFRGEDTRDNFTSH-LYSALCH--NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGW 83 (118)
Q Consensus 8 ~~~~~~~dVFISys~~D~~~~fv~~-L~~~L~~--~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~w 83 (118)
...++.|||||||+++|. .||.+ |...|++ .|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+||+|++|+|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999995 79975 9999998 8999999887 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hhCCCEEEEEEee-cCCCC
Q 041158 84 CLDELLKILECK-HVYGQIVIPVFCR-VDPSH 113 (118)
Q Consensus 84 c~~El~~~~~~~-~~~~~~iiPI~~~-v~p~~ 113 (118)
|..|+..|+.+. ++++.+||||+|+ +.+.+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~ 139 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYC 139 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGGG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChHH
Confidence 999999998643 4567789999996 44333
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=8.3e-27 Score=161.69 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=87.9
Q ss_pred CeeeEEEEeeeccC---------ccchHHHHHH-HHc-cCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCcc
Q 041158 12 NKHGIFLSFRGEDT---------RDNFTSHLYS-ALC-HNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYA 79 (118)
Q Consensus 12 ~~~dVFISys~~D~---------~~~fv~~L~~-~L~-~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~ 79 (118)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 2468888565 699 79999999887 999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHhh-hhCCCEEEEEEeecCC
Q 041158 80 -SSGWCLDELLKILECK-HVYGQIVIPVFCRVDP 111 (118)
Q Consensus 80 -~S~wc~~El~~~~~~~-~~~~~~iiPI~~~v~p 111 (118)
.|.||..|+..|+.+. .+++.+||||+++..+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999865 5578899999986544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=2.8e-21 Score=160.34 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=90.0
Q ss_pred CCCCeeeEEEEeeeccCccchH-HHHHHHHcc-----CCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCc
Q 041158 9 RNSNKHGIFLSFRGEDTRDNFT-SHLYSALCH-----NNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASS 81 (118)
Q Consensus 9 ~~~~~~dVFISys~~D~~~~fv-~~L~~~L~~-----~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S 81 (118)
...+.|||||||+++|. .|| ..|...|+. .|+++|++++ +.||+.+.++|.++|++||.+|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35789999999999996 688 679999984 5899999988 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhh-hhCCCEEEEEEeecCC
Q 041158 82 GWCLDELLKILECK-HVYGQIVIPVFCRVDP 111 (118)
Q Consensus 82 ~wc~~El~~~~~~~-~~~~~~iiPI~~~v~p 111 (118)
+||..|+..|..+. ++++.+||||+|+.-|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 99999999988654 4577899999996544
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.58 E-value=4.4e-08 Score=63.82 Aligned_cols=73 Identities=11% Similarity=-0.008 Sum_probs=55.6
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHH
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKI 91 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~ 91 (118)
.+|.+||||+.+| -.+.|...|.+.|+.. .| +.|+.|.++|++.++....++||..|+..|
T Consensus 3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE----DYRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH----HHHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh----HHHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5789999999887 2455666664445433 22 678999999999999999999999998876
Q ss_pred HHhhhhCCCEEEEEEe
Q 041158 92 LECKHVYGQIVIPVFC 107 (118)
Q Consensus 92 ~~~~~~~~~~iiPI~~ 107 (118)
.+ .+.+||-|.-
T Consensus 64 ~~----~gkpIigV~~ 75 (111)
T 1eiw_A 64 RK----SSKPIITVRP 75 (111)
T ss_dssp TT----TTCCEEEECC
T ss_pred HH----cCCCEEEEEc
Confidence 54 5667777764
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.51 E-value=0.00031 Score=49.20 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=66.0
Q ss_pred eeeEEEEe--------------eeccCccchHHHHHHHHccCCcceEEeCC-C----C---C-CccchHHHHHHHHhcCe
Q 041158 13 KHGIFLSF--------------RGEDTRDNFTSHLYSALCHNNIETFIDND-L----K---R-GDEISQSLLDTIEASTI 69 (118)
Q Consensus 13 ~~dVFISy--------------s~~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~----~---~-G~~~~~~i~~~i~~s~~ 69 (118)
.--+||+| ..+| -.+...|+.--.....--|.|.. . . . -..|...+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578888 3344 24556666666555554556643 3 1 2 23477899999999999
Q ss_pred EEEEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEEee
Q 041158 70 SIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCR 108 (118)
Q Consensus 70 ~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iiPI~~~ 108 (118)
+|+++|++...|.|...|+..|++ +.+.+||-|..+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPD 118 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETT
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECC
Confidence 999999999999999999998873 256688888765
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=96.32 E-value=0.027 Score=38.36 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=55.0
Q ss_pred cchHHHHHHHHccCCcceEEeCC--CCCCccchHHHHHHHHhcCeEEEEecC--CccCchhhHHHHHHHHHhhhhCCCEE
Q 041158 27 DNFTSHLYSALCHNNIETFIDND--LKRGDEISQSLLDTIEASTISIIIFSE--RYASSGWCLDELLKILECKHVYGQIV 102 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi~v~~d~~--~~~G~~~~~~i~~~i~~s~~~I~v~S~--~~~~S~wc~~El~~~~~~~~~~~~~i 102 (118)
..+..++.+.|+++|+.+|.-.+ ...+..+.++=.++|++|+++|++++| .-..++-+..|+..+... +++|
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al----gKPV 101 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL----NKMV 101 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT----TCEE
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC----CCEE
Confidence 47889999999999999887433 222233344447899999999999997 555667789999988763 4466
Q ss_pred EEE
Q 041158 103 IPV 105 (118)
Q Consensus 103 iPI 105 (118)
|-+
T Consensus 102 i~l 104 (161)
T 2f62_A 102 LTF 104 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=94.08 E-value=0.37 Score=32.52 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCCeeeEEEEeeec-cCccc-hHHHHHHHHccCCcceEEeCCCC-----CCcc-------chHHHHHHHHhcCeEEEEec
Q 041158 10 NSNKHGIFLSFRGE-DTRDN-FTSHLYSALCHNNIETFIDNDLK-----RGDE-------ISQSLLDTIEASTISIIIFS 75 (118)
Q Consensus 10 ~~~~~dVFISys~~-D~~~~-fv~~L~~~L~~~Gi~v~~d~~~~-----~G~~-------~~~~i~~~i~~s~~~I~v~S 75 (118)
..++..|||+=.-. +.... ....+.+.|+..| .|+.+.... .|.. +...-.+.|++|+++|++++
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~ 86 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT 86 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC
Confidence 34456799985432 21112 5688999999999 776543221 1211 22233478999999999997
Q ss_pred CCccCchhhHHHHHHHHHhhhhCCCEEEEE
Q 041158 76 ERYASSGWCLDELLKILECKHVYGQIVIPV 105 (118)
Q Consensus 76 ~~~~~S~wc~~El~~~~~~~~~~~~~iiPI 105 (118)
..+.-+..|+..+.. .+.+|+-+
T Consensus 87 ---~~d~Gt~~EiGyA~a----lgKPVi~l 109 (165)
T 2khz_A 87 ---QPSLGVGYELGRAVA----LGKPILCL 109 (165)
T ss_dssp ---SCCHHHHHHHHHHHH----TCSSEEEE
T ss_pred ---CCCCCHHHHHHHHHH----CCCEEEEE
Confidence 568889999999876 34455544
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=91.64 E-value=1.2 Score=30.13 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=51.9
Q ss_pred cchHHHHHHHHccC--CcceEEeCC-C----CCCccc----hHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhh
Q 041158 27 DNFTSHLYSALCHN--NIETFIDND-L----KRGDEI----SQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK 95 (118)
Q Consensus 27 ~~fv~~L~~~L~~~--Gi~v~~d~~-~----~~G~~~----~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~ 95 (118)
..+..++.++|+.+ |+.+|.-.+ - .++..+ .+.=.++|++|+++|.++. ....+..+..|+..|..
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a-- 95 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYA-- 95 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHH--
Confidence 35778899999865 888886432 1 122233 3444558999999999994 44568899999999886
Q ss_pred hhCCCEEEEEE
Q 041158 96 HVYGQIVIPVF 106 (118)
Q Consensus 96 ~~~~~~iiPI~ 106 (118)
.+.+|+.+.
T Consensus 96 --~gkPVi~~~ 104 (162)
T 3ehd_A 96 --KGIPVVALY 104 (162)
T ss_dssp --TTCCEEEEC
T ss_pred --CCCEEEEEE
Confidence 344666654
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=91.42 E-value=1.2 Score=30.03 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=48.4
Q ss_pred chHHHHHHHHccCCcceEEe---CC-C-CCCc-------cchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhh
Q 041158 28 NFTSHLYSALCHNNIETFID---ND-L-KRGD-------EISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECK 95 (118)
Q Consensus 28 ~fv~~L~~~L~~~Gi~v~~d---~~-~-~~G~-------~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~ 95 (118)
.+..++.+.|++.| .|+-. .. + ..|+ .+.+.-.++|++|+++|.+++ ..+.-+..|+..|...
T Consensus 19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~al- 93 (152)
T 4fyk_A 19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVAL- 93 (152)
T ss_dssp HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHc-
Confidence 57799999999999 67531 11 1 1222 244555678999999999988 6688899999998863
Q ss_pred hhCCCEEEEEE
Q 041158 96 HVYGQIVIPVF 106 (118)
Q Consensus 96 ~~~~~~iiPI~ 106 (118)
+.+|+-++
T Consensus 94 ---gkPV~~l~ 101 (152)
T 4fyk_A 94 ---GKPILCLF 101 (152)
T ss_dssp ---TCCEEEEE
T ss_pred ---CCeEEEEE
Confidence 34555443
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=89.37 E-value=2.3 Score=28.78 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=51.2
Q ss_pred cchHHHHHHHHccC--CcceEEeCC--C--------CCC--------ccchHHHHHHHHhcCeEEEEecCCccCchhhHH
Q 041158 27 DNFTSHLYSALCHN--NIETFIDND--L--------KRG--------DEISQSLLDTIEASTISIIIFSERYASSGWCLD 86 (118)
Q Consensus 27 ~~fv~~L~~~L~~~--Gi~v~~d~~--~--------~~G--------~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~ 86 (118)
..+..++.+.|+++ |+.+|.-.+ . ..+ ..+.+.=.++|++|+++|.++... ..+.-+..
T Consensus 22 ~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~-~~D~GTa~ 100 (167)
T 1s2d_A 22 RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMD-QLDDGSAF 100 (167)
T ss_dssp HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESS-SCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCC-CCCCCcee
Confidence 46888999999999 888886332 2 111 122334456899999999999863 34677889
Q ss_pred HHHHHHHhhhhCCCEEEEE
Q 041158 87 ELLKILECKHVYGQIVIPV 105 (118)
Q Consensus 87 El~~~~~~~~~~~~~iiPI 105 (118)
|+..|... +.+|+-+
T Consensus 101 EiGyA~al----gKPVv~l 115 (167)
T 1s2d_A 101 XIGFMRAM----HKPVILV 115 (167)
T ss_dssp HHHHHHHT----TCCEEEE
T ss_pred ehhhHhhC----CCeEEEE
Confidence 99988763 4456555
No 17
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=82.05 E-value=5.5 Score=26.57 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=50.3
Q ss_pred cchHHHHHHHHccCCc----ceEEeCC--C--------CC---C----ccchHHHHHHHHhcCeEEEEecCCccCchhhH
Q 041158 27 DNFTSHLYSALCHNNI----ETFIDND--L--------KR---G----DEISQSLLDTIEASTISIIIFSERYASSGWCL 85 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi----~v~~d~~--~--------~~---G----~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~ 85 (118)
..+..++.+.|+.+|. .+|.-.+ . .. + ..+.+.=.++|++|+++|.++.. -..+.-+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg-~~~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIP-DEEDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCG-GGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCC-CCCCccHH
Confidence 3678899999999985 6765332 2 11 1 12233445689999999999874 33567788
Q ss_pred HHHHHHHHhhhhCCCEEEEEE
Q 041158 86 DELLKILECKHVYGQIVIPVF 106 (118)
Q Consensus 86 ~El~~~~~~~~~~~~~iiPI~ 106 (118)
.|+..|.. .+++|+-+.
T Consensus 97 ~EiGyA~A----~gkPVv~~~ 113 (157)
T 1f8y_A 97 MELGYALS----QGKYVLLVI 113 (157)
T ss_dssp HHHHHHHH----TTCEEEEEE
T ss_pred HHHHHHHH----CCCeEEEEE
Confidence 99998876 344665543
No 18
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=76.89 E-value=13 Score=24.18 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=41.0
Q ss_pred EEEEeeeccCccchHHHHHHHHccCCcceEEeC-------------C-C---CCC-c-cchHHHHHHHHhcCeEEEEecC
Q 041158 16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-------------D-L---KRG-D-EISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~-------------~-~---~~G-~-~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
||||.+..|. .-+..+.+.|...|++++--. . + ..| + .-.++|.+.|++-++-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987764 345567778888888876211 1 1 112 1 0004789999999999999888
Q ss_pred Ccc
Q 041158 77 RYA 79 (118)
Q Consensus 77 ~~~ 79 (118)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=71.70 E-value=16 Score=23.10 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=15.4
Q ss_pred hHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHH
Q 041158 29 FTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTI 64 (118)
Q Consensus 29 fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i 64 (118)
+...+.+.+....-.+++-.- + +.+.+.+.+.++.
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~ 50 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAK 50 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHH
Confidence 455555666544434443322 3 2333444444443
No 20
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=67.81 E-value=3.6 Score=24.04 Aligned_cols=37 Identities=8% Similarity=0.248 Sum_probs=26.6
Q ss_pred HHHHHHHHccCCcceEEeCC-CC---CCccchHHHHHHHHh
Q 041158 30 TSHLYSALCHNNIETFIDND-LK---RGDEISQSLLDTIEA 66 (118)
Q Consensus 30 v~~L~~~L~~~Gi~v~~d~~-~~---~G~~~~~~i~~~i~~ 66 (118)
+..|...|+..|+..|.+.+ +. |-..+.+++...+..
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 34677889999999999886 53 344566677766654
No 21
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=61.03 E-value=18 Score=27.24 Aligned_cols=61 Identities=8% Similarity=0.148 Sum_probs=39.2
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
..+||+|---+.+ ....+..|.+.|++.|++|-+|.+ +..+..++..|=..---.++++.+
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iiiG~ 357 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGD 357 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEECc
Confidence 4578988654433 346889999999999999999864 234554555544333334444444
No 22
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=59.90 E-value=2.3 Score=25.73 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=16.9
Q ss_pred EEEeeeccCccchHHHHHHHHccCC
Q 041158 17 FLSFRGEDTRDNFTSHLYSALCHNN 41 (118)
Q Consensus 17 FISys~~D~~~~fv~~L~~~L~~~G 41 (118)
|.||++...+..|+..|.+.|+++|
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4555555445578899998887644
No 23
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=59.45 E-value=1.5 Score=26.95 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=17.8
Q ss_pred eeeEEEEeeecc---------CccchHHHHHHHHccCC
Q 041158 13 KHGIFLSFRGED---------TRDNFTSHLYSALCHNN 41 (118)
Q Consensus 13 ~~dVFISys~~D---------~~~~fv~~L~~~L~~~G 41 (118)
.-|.+++|+..+ .+..|+..|.+.|+++|
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 457777665433 33457777777776543
No 24
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=58.75 E-value=23 Score=27.64 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=38.9
Q ss_pred CCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158 11 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 11 ~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
....||||..-+.+. ...+..|...|++.|+++-+|. ..+..+..++..|=..---.++|+.+
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~viiG~ 479 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAIIGE 479 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECS--SSSCCHHHHHHHHHHHCCCEEEEECH
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEECC
Confidence 346789987654432 3567889999999999997653 22334555555544432234455543
No 25
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=58.36 E-value=2.6 Score=25.78 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=14.5
Q ss_pred EEeeeccCccchHHHHHHHHccCC
Q 041158 18 LSFRGEDTRDNFTSHLYSALCHNN 41 (118)
Q Consensus 18 ISys~~D~~~~fv~~L~~~L~~~G 41 (118)
.||++.+.+..|+..|.+.|+++|
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeecCCCCCeeHHHHHHHHHHhC
Confidence 344444344568888888887644
No 26
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=57.11 E-value=11 Score=23.88 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHH
Q 041158 35 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLK 90 (118)
Q Consensus 35 ~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~ 90 (118)
--++..|+.+|.. ..-+.+.+.+.+.+++ ++.|++++.+.... +.+++..
T Consensus 15 ~GFrLaGie~~~v---~~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 15 SPFRLFGFDVQHG---TTKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGGTCEEECC---CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHcCCeEEEe---CCHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 3455678877642 3334566667777777 99999999988763 4444444
No 27
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=56.96 E-value=15 Score=28.38 Aligned_cols=63 Identities=3% Similarity=0.029 Sum_probs=41.3
Q ss_pred CCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCC
Q 041158 11 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 77 (118)
Q Consensus 11 ~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~ 77 (118)
....||+|-.-+.+. ...+..+.+.|++.|++|-+|.. +..+..++..|-..---.++++.++
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 345799986644443 46788999999999999988753 2344445555544433456666654
No 28
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=54.67 E-value=16 Score=27.83 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=37.5
Q ss_pred eeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHH-hcCeEEEEecC
Q 041158 13 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIIIFSE 76 (118)
Q Consensus 13 ~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~I~v~S~ 76 (118)
.+||+|..-+.+. ...+..|.+.|++.|++|-+|.+ +..+...+..|-. .+... +|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~-iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFA-VIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEE-EEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEE-EEECc
Confidence 5899876544433 46788999999999999988753 2344444444333 44444 44443
No 29
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=54.25 E-value=3.4 Score=25.65 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=17.4
Q ss_pred eeEEEEeeec---------cCccchHHHHHHHHccCC
Q 041158 14 HGIFLSFRGE---------DTRDNFTSHLYSALCHNN 41 (118)
Q Consensus 14 ~dVFISys~~---------D~~~~fv~~L~~~L~~~G 41 (118)
-|.+++|+.. ..+..|+..|.+.|+++|
T Consensus 17 aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 17 ADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 4666666543 333467888888887643
No 30
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=53.82 E-value=24 Score=26.83 Aligned_cols=62 Identities=16% Similarity=0.114 Sum_probs=38.2
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
...||+|...+.+. ...+..|...|++.|++|-+|. ..+..+..++..|=..---.++|+.+
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~viiG~ 426 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAIIGE 426 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCS--CSSCCHHHHHHHHHHHTCCEEEECCH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEECc
Confidence 46789997755543 3567889999999999996653 22334555555544432234444443
No 31
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=53.55 E-value=3.5 Score=25.66 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=14.3
Q ss_pred EEeeeccCccchHHHHHHHHccCC
Q 041158 18 LSFRGEDTRDNFTSHLYSALCHNN 41 (118)
Q Consensus 18 ISys~~D~~~~fv~~L~~~L~~~G 41 (118)
+||++.+.+..|+..|.+.|+++|
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 333443334568888888887643
No 32
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=53.41 E-value=31 Score=26.73 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=40.1
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
...||||..-+.+. ...+-.+...|++.|++|-++-. +..+..++..|-+.--..++++.+
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEECC
Confidence 35788876655543 35678899999999999977532 334666666665544445666654
No 33
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=51.98 E-value=14 Score=28.47 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=30.4
Q ss_pred CeeeEEEEeee-c-cCccchHHHHHHHHccCCcceEEeCC-CCCCcc
Q 041158 12 NKHGIFLSFRG-E-DTRDNFTSHLYSALCHNNIETFIDND-LKRGDE 55 (118)
Q Consensus 12 ~~~dVFISys~-~-D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~ 55 (118)
..++|+|---+ + +.....+..|++.|++.|++|-+|.+ -.+|..
T Consensus 364 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k 410 (458)
T 2i4l_A 364 APFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAK 410 (458)
T ss_dssp CSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHH
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHH
Confidence 35788876432 1 22346889999999999999999875 333443
No 34
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=51.27 E-value=41 Score=20.82 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccC
Q 041158 34 YSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS 80 (118)
Q Consensus 34 ~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~ 80 (118)
.--+...|+.+|.. ...+.+.+.+.+.+++-++.|++++.+...
T Consensus 15 v~GFrLaGi~~~~v---~~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 15 AQGFRLAGLEGYGA---SSAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHTTSEEEEC---SSHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHcCCeEEEe---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34455678888753 333556667777777789999999999888
No 35
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=50.34 E-value=49 Score=21.39 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred eeeE-EEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHH-hcCeEEEE
Q 041158 13 KHGI-FLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIII 73 (118)
Q Consensus 13 ~~dV-FISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~I~v 73 (118)
..+| .|.-+.+ ...+|..+...|...|+++=+|. ...++.+...|.++-. +.-++|+|
T Consensus 8 P~Qv~IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 8 PVDCSVIVVNKQ--TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CCTEEEEESSSG--GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEEeCcc--hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 4445 3444433 35799999999999999997764 1236777667766443 34444444
No 36
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=49.33 E-value=19 Score=27.12 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=38.3
Q ss_pred CCeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158 11 SNKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 11 ~~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
...+||+|-.-+.+. ...+..|.+.|++.|++|-+|.. +..+...+..|-..---.++++.+
T Consensus 327 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iiig~ 388 (420)
T 1qe0_A 327 EENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIGD 388 (420)
T ss_dssp CCCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCEEEEECc
Confidence 345789877544332 35788999999999999998753 234444444443322224555554
No 37
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=47.53 E-value=17 Score=28.56 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=31.8
Q ss_pred CeeeEEEEee-ecc---CccchHHHHHHHHccCCcceEEeCC-CCCCccc
Q 041158 12 NKHGIFLSFR-GED---TRDNFTSHLYSALCHNNIETFIDND-LKRGDEI 56 (118)
Q Consensus 12 ~~~dVFISys-~~D---~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~ 56 (118)
..++|+|--- .++ .....+..|++.|++.|++|-+|.+ -.+|..+
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~ 362 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKY 362 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 5678887654 322 2346889999999999999999875 4444433
No 38
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=47.48 E-value=23 Score=27.46 Aligned_cols=64 Identities=9% Similarity=0.212 Sum_probs=42.1
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCC-CCCccchHHHHHHHHhcCeEEEEecC
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDL-KRGDEISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~-~~G~~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
...||+|-.-+.+. ...+..+.+.|++.|++|-+|..- ..+..+..++..|-+.---+++|+.+
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 44789876544432 357889999999999999887530 12566776777665544445555554
No 39
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=47.36 E-value=64 Score=22.75 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=35.8
Q ss_pred HHccCCcceE-EeCCCCCCccchHHHHHHHHhcCeEEEEecCCccC-chhhHHHHHHHHHhhhhCC
Q 041158 36 ALCHNNIETF-IDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS-SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 36 ~L~~~Gi~v~-~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~-S~wc~~El~~~~~~~~~~~ 99 (118)
.++..|.++- ++-+-..+-.+ +.+.+++.. ..+|++.+|+.-. .-+..+++..+.+..++.+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 177 (361)
T 3ftb_A 114 NAKKHGVSVVFSYLDENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKK 177 (361)
T ss_dssp HHHHTTCEEEEEECCTTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEeecCcccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcC
Confidence 3445576553 33221112222 678888887 7777888886543 4456677777776554444
No 40
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=46.41 E-value=26 Score=25.26 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=45.8
Q ss_pred cchHHHHHHHHccCCcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhhhh
Q 041158 27 DNFTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHV 97 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~ 97 (118)
-.++.++.+.|...|+.+-..+. +-.|-... +.-.-.+.++=||-+|-+...++--..+|..++...++
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd 164 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD 164 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999996543333 44554332 22222356666777888876677666799998865543
No 41
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=45.70 E-value=3.5 Score=26.34 Aligned_cols=29 Identities=3% Similarity=0.110 Sum_probs=18.3
Q ss_pred eeeEEEEeeec---------cCccchHHHHHHHHccCC
Q 041158 13 KHGIFLSFRGE---------DTRDNFTSHLYSALCHNN 41 (118)
Q Consensus 13 ~~dVFISys~~---------D~~~~fv~~L~~~L~~~G 41 (118)
+-|.+++||.. ..+..|+..|.+.|++.|
T Consensus 15 eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 35666666543 334568888888887644
No 42
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=45.56 E-value=73 Score=24.93 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=36.2
Q ss_pred CeeeEEEEeee--ccCccchHHHHHHHHccCCcceE--EeCCCCCCccchHHHHHHHHhcCeEEEEecCCc
Q 041158 12 NKHGIFLSFRG--EDTRDNFTSHLYSALCHNNIETF--IDNDLKRGDEISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 12 ~~~dVFISys~--~D~~~~fv~~L~~~L~~~Gi~v~--~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
-.++|=|--.. .|.-..++..|++.|++.|++|. +|++ .++.+...+.++=..---.++++.++-
T Consensus 347 AP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr--~~~siGkK~r~Ad~iGiPy~IiVG~kE 415 (459)
T 3ikl_A 347 APIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLET--MQSSLEQLYSKYDEMSILFTVLVTETT 415 (459)
T ss_dssp CSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSS--SCCTTHHHHHHHGGGTCSEEEEECTTS
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCC--cCCCHHHHHHHHHHcCCCEEEEECchh
Confidence 34555443322 23345789999999999999998 6542 122333333333222223455566554
No 43
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=45.56 E-value=57 Score=22.30 Aligned_cols=57 Identities=11% Similarity=-0.001 Sum_probs=37.7
Q ss_pred eeeEEEEeeecc-CccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEE
Q 041158 13 KHGIFLSFRGED-TRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISII 72 (118)
Q Consensus 13 ~~dVFISys~~D-~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~ 72 (118)
..=+||-|.+.+ ....++..+.++|++.|+.+-.- ++.. .-.+.+.+.|++++.+++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~-~i~~--~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL-DIAT--ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC-CTTT--SCHHHHHHHHHHSSEEEE
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE-EecC--CChHHHHHHHHhCCEEEE
Confidence 344699997652 22368889999999999876432 1222 223456678899988665
No 44
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=45.38 E-value=5.3 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=14.9
Q ss_pred EEeeeccCccchHHHHHHHHccCC
Q 041158 18 LSFRGEDTRDNFTSHLYSALCHNN 41 (118)
Q Consensus 18 ISys~~D~~~~fv~~L~~~L~~~G 41 (118)
+||++...+..|+..|.+.|++.|
T Consensus 29 vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 29 YSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeEeCCCCCccHHHHHHHHHHhC
Confidence 334443334568888888887644
No 45
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=44.52 E-value=51 Score=26.68 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=39.9
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCc
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
..++|+|---+. .....+..|++.|++.|++|-+|.+ ++.+...+.+|=..---.++|+.++-
T Consensus 538 aP~qv~vipi~~-~~~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p~~ivvG~~E 600 (642)
T 1qf6_A 538 APVQVVIMNITD-SQSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGDKE 600 (642)
T ss_dssp CSSCEEEEESSH-HHHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECTTT
T ss_pred CCceEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECchh
Confidence 457887754332 2357889999999999999999875 23444455444333223455566553
No 46
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=44.14 E-value=20 Score=26.97 Aligned_cols=60 Identities=13% Similarity=0.287 Sum_probs=38.2
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccC--CcceEEeCCCCCCccchHHHHHHHH-hcCeEEEEecC
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDNDLKRGDEISQSLLDTIE-ASTISIIIFSE 76 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~--Gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~I~v~S~ 76 (118)
..+||+|-.-+.+ ....+..|.+.|++. |++|-+|.+ +..+...+..|-. .+.. ++++.+
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~-~iiiG~ 388 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARV-AVVLGE 388 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSE-EEEECH
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCE-EEEECc
Confidence 4578988775443 246788999999998 999988753 2344444544433 3444 444443
No 47
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=43.46 E-value=43 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=23.9
Q ss_pred EEEeeeccCc--cchHHHHHHHHccCCcceEEe
Q 041158 17 FLSFRGEDTR--DNFTSHLYSALCHNNIETFID 47 (118)
Q Consensus 17 FISys~~D~~--~~fv~~L~~~L~~~Gi~v~~d 47 (118)
||.+-|-|.. ..-+..|.+.|+.+|+++-.-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 7888777643 357788999999999987653
No 48
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=41.92 E-value=52 Score=25.89 Aligned_cols=63 Identities=6% Similarity=0.136 Sum_probs=39.6
Q ss_pred CeeeEEEEeee-c-cCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCC
Q 041158 12 NKHGIFLSFRG-E-DTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 77 (118)
Q Consensus 12 ~~~dVFISys~-~-D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~ 77 (118)
..++|+|---+ + +.....+..|++.|++.|++|-+|.+ +..+..++..|=..---.++++.++
T Consensus 469 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~~iivG~~ 533 (572)
T 2j3l_A 469 APFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPIRITVGKK 533 (572)
T ss_dssp SSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSEEEEECGG
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCEEEEEccc
Confidence 34789876544 2 22246788999999999999999864 2344445555444333345555554
No 49
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=41.81 E-value=35 Score=27.50 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=38.0
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHH-hcCeEEEEecC
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIIIFSE 76 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~I~v~S~ 76 (118)
..++|+|---+++.....+..|++.|++.|++|.+|.+ ++.+...+.+|=. ... .++|+.+
T Consensus 544 ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~---~~~~g~k~~~a~~~g~p-~~iivG~ 605 (645)
T 1nyr_A 544 APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIP-YQIVVGD 605 (645)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCS-EEEEECH
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCC-EEEEEcc
Confidence 34688775433133356889999999999999999864 3344445555433 333 4444443
No 50
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=40.11 E-value=13 Score=22.86 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.5
Q ss_pred cchHHHHHHHHccCCcce
Q 041158 27 DNFTSHLYSALCHNNIET 44 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi~v 44 (118)
..|+..|...|..+|++|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 369999999999999998
No 51
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=39.06 E-value=67 Score=26.39 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=39.0
Q ss_pred eeeEEEEeeecc-CccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCC
Q 041158 13 KHGIFLSFRGED-TRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 77 (118)
Q Consensus 13 ~~dVFISys~~D-~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~ 77 (118)
.++|+|---+++ .....+..|.+.|++.|++|.+|.+ +..+..++.++=..---+++++.++
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~---~~sigkk~k~Ad~~G~p~~IiIG~~ 621 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS---SGSIGRRYARTDEIGVAFGVTIDFD 621 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC---CSCHHHHHHHHHHTTCCEEEEECHH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEEcch
Confidence 578987664433 2357889999999999999999864 2334444444433323344455443
No 52
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=37.25 E-value=40 Score=26.44 Aligned_cols=62 Identities=8% Similarity=-0.005 Sum_probs=39.8
Q ss_pred CeeeEEEEeeec-c-CccchHHHHHHHHccCC-cceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCC
Q 041158 12 NKHGIFLSFRGE-D-TRDNFTSHLYSALCHNN-IETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 77 (118)
Q Consensus 12 ~~~dVFISys~~-D-~~~~fv~~L~~~L~~~G-i~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~ 77 (118)
..++|+|---++ + .....+..|++.|+..| ++|-+|.. ..+..++.++=..---+++++.++
T Consensus 397 aP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~~iivG~~ 461 (505)
T 1ati_A 397 APIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPFAVTVDYD 461 (505)
T ss_dssp CSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSEEEEECHH
T ss_pred CCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCEEEEEChH
Confidence 358898865443 1 22468899999999999 99988764 345555555444333345555544
No 53
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=36.90 E-value=29 Score=26.55 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=30.3
Q ss_pred EEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCC--C-ccchHHHHHHHHhcC
Q 041158 16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKR--G-DEISQSLLDTIEAST 68 (118)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~--G-~~~~~~i~~~i~~s~ 68 (118)
|-|=|+..|-...++..+.+++++.|+.+-..+.+.. + ..+...+.+.|+++.
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~ 243 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPN 243 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTT
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCC
Confidence 4444544333456788888999999987755544433 2 233334435566444
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=36.89 E-value=69 Score=20.66 Aligned_cols=27 Identities=4% Similarity=0.145 Sum_probs=19.4
Q ss_pred CC-ccchHHHHHHHHhcCeEEEEecCCc
Q 041158 52 RG-DEISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 52 ~G-~~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
+| +.+.......++.++.+|+|++.+-
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 44 3455556667889999999998653
No 55
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=36.80 E-value=94 Score=21.84 Aligned_cols=86 Identities=10% Similarity=0.187 Sum_probs=47.9
Q ss_pred eEEEEeeeccCccchHHH-HHHHHccCCcceE-EeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHH
Q 041158 15 GIFLSFRGEDTRDNFTSH-LYSALCHNNIETF-IDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKIL 92 (118)
Q Consensus 15 dVFISys~~D~~~~fv~~-L~~~L~~~Gi~v~-~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~ 92 (118)
-|.+.--..|. +..-.. +...|+.+|+.|. +..+.. .+++.+++.+.+.-++.+|-....+ +..+...+
T Consensus 125 ~vlla~~~gd~-HdiG~~iva~~L~~~G~~Vi~LG~~vp-----~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~i 195 (258)
T 2i2x_B 125 TVVCHVAEGDV-HDIGKNIVTALLRANGYNVVDLGRDVP-----AEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEVN 195 (258)
T ss_dssp EEEEEECTTCC-CCHHHHHHHHHHHHTTCEEEEEEEECC-----SHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHHH
T ss_pred eEEEEeCCCCc-cHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHHH
Confidence 35554434443 455544 5556789999984 332222 2467777777777677776554443 23444444
Q ss_pred HhhhhCCCEEEEEEeecC
Q 041158 93 ECKHVYGQIVIPVFCRVD 110 (118)
Q Consensus 93 ~~~~~~~~~iiPI~~~v~ 110 (118)
+..++.+.. +||++...
T Consensus 196 ~~l~~~~~~-~~v~vGG~ 212 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGGG 212 (258)
T ss_dssp HHHHTTTCC-CCEEEEST
T ss_pred HHHHhcCCC-CcEEEECc
Confidence 433334444 88888643
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=36.00 E-value=57 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=18.1
Q ss_pred CCc-cchHHHHHHHHhcCeEEEEecCC
Q 041158 52 RGD-EISQSLLDTIEASTISIIIFSER 77 (118)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~v~S~~ 77 (118)
+|. .+.......++.++.+|+|++.+
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVT 95 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECC
Confidence 553 34444556778899999999865
No 57
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=35.24 E-value=52 Score=24.02 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=32.0
Q ss_pred hHHHHHHHHccCC----cceEEeCCCCCCccchHHHHHHHHh---cCeEEEEecCCccC--chhhHHHHHHHH
Q 041158 29 FTSHLYSALCHNN----IETFIDNDLKRGDEISQSLLDTIEA---STISIIIFSERYAS--SGWCLDELLKIL 92 (118)
Q Consensus 29 fv~~L~~~L~~~G----i~v~~d~~~~~G~~~~~~i~~~i~~---s~~~I~v~S~~~~~--S~wc~~El~~~~ 92 (118)
.+..|.+.|..+| +.|.+- ++.|....++..+.+.+ .+++++.+.|.|.. ..-..+++..++
T Consensus 63 q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l 133 (310)
T 2h1v_A 63 QAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEA 133 (310)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHH
Confidence 4566667775443 444333 56666555444444442 33567777777743 233344444443
No 58
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=34.80 E-value=1.1e+02 Score=22.41 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=39.0
Q ss_pred CcceEEeCCCCCCccchHHHHHHHH------hcCeEEEEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEEeecCC
Q 041158 41 NIETFIDNDLKRGDEISQSLLDTIE------ASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCRVDP 111 (118)
Q Consensus 41 Gi~v~~d~~~~~G~~~~~~i~~~i~------~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iiPI~~~v~p 111 (118)
|...|++-.=..-..+..+|..... ..+.+|+|-|=|+..+ .+|..++...-.-...++-+++..-|
T Consensus 68 ~ad~FI~a~~ksl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~DvP 140 (270)
T 4a8j_B 68 YCTQFIDATQMDFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHKDIK 140 (270)
T ss_dssp TCSEEEETTSSCHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEETTSC
T ss_pred CCCeeeEcCCCCHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecCCCC
Confidence 5666776542222333344433332 2267999999999997 46666655433345678888774333
No 59
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=32.58 E-value=34 Score=21.05 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=23.7
Q ss_pred eEEEEeeeccCccchHHHHHHHHccCCcceEEeCC
Q 041158 15 GIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDND 49 (118)
Q Consensus 15 dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~ 49 (118)
+---=|+..|. .-+..+...|+..||.||+-+.
T Consensus 22 ~M~eL~ra~d~--v~a~~~k~LLe~aGI~~fv~De 54 (97)
T 2hfv_A 22 HLRELLRTNDA--VLLSAVGALLDGADIGHLVLDQ 54 (97)
T ss_dssp SEEEEEEECCH--HHHHHHHHHHHHTTCCEECCSC
T ss_pred cceeeeecCCH--HHHHHHHHHHHhCCCCEEEcCC
Confidence 33344566664 4677788888999999998655
No 60
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=32.56 E-value=50 Score=20.32 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=16.8
Q ss_pred cchHHHHHHHHhcCeEEEEecCCc
Q 041158 55 EISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 55 ~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
.+.......++.++.+|+|++.+-
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~ 90 (170)
T 1z0j_A 67 RFRALAPMYYRGSAAAIIVYDITK 90 (170)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTC
T ss_pred hhhcccHhhCcCCCEEEEEEECcC
Confidence 344445567788999999988654
No 61
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=32.53 E-value=83 Score=22.34 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=35.5
Q ss_pred HHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhhhhCC
Q 041158 35 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYG 99 (118)
Q Consensus 35 ~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~ 99 (118)
..+...|.-=++|-++..++.+..++.+..+....-| |+|-+-++..|..+|+...+....+.+
T Consensus 106 ~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 106 KEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 3333445434667665555555555555555544444 556665555666678877776555444
No 62
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=32.36 E-value=21 Score=23.10 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=16.0
Q ss_pred cchHHHHHHHHccCCcce
Q 041158 27 DNFTSHLYSALCHNNIET 44 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi~v 44 (118)
..|+..|+..|.++|++|
T Consensus 8 ~~fi~~Lk~~LK~rGvkV 25 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKV 25 (124)
T ss_dssp HHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCCeee
Confidence 469999999999999976
No 63
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=31.68 E-value=42 Score=20.61 Aligned_cols=44 Identities=14% Similarity=0.355 Sum_probs=30.4
Q ss_pred HHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccC
Q 041158 35 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS 80 (118)
Q Consensus 35 ~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~ 80 (118)
--+...|+..+... ..-+.+.+.+.+.+++-++.|++++.+...
T Consensus 22 ~GFrLaGi~~~~~~--~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFMLAGISDIYEV--TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHTTCCCEEEC--CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHcCCCcccCC--CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34556687776521 223456667777777789999999999886
No 64
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=31.47 E-value=61 Score=19.82 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=18.5
Q ss_pred CCc-cchHHHHHHHHhcCeEEEEecCCc
Q 041158 52 RGD-EISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
+|. .+.......+..++.+|+|++.+-
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITN 90 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCC
Confidence 443 344455667788999999998653
No 65
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=31.44 E-value=65 Score=23.52 Aligned_cols=54 Identities=7% Similarity=-0.049 Sum_probs=32.7
Q ss_pred eEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCc-cchHHHHHHHHhcCe
Q 041158 15 GIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGD-EISQSLLDTIEASTI 69 (118)
Q Consensus 15 dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~-~~~~~i~~~i~~s~~ 69 (118)
.|.|=|...+-....+..+.+.|++.|+.+-....+.+|. ++. .+...|+.++.
T Consensus 166 ~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~-~~l~~i~~~~~ 220 (419)
T 3h5l_A 166 KIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWG-PTLAKLRADPP 220 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCH-HHHHHHHHSCC
T ss_pred EEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHH-HHHHHHHhcCC
Confidence 4555554332234577788888888998886544455553 444 45556666554
No 66
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=30.70 E-value=1.3e+02 Score=20.57 Aligned_cols=64 Identities=8% Similarity=0.090 Sum_probs=27.8
Q ss_pred HHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCcc----CchhhHHHHHHHHHhhhhCCCEEE
Q 041158 35 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA----SSGWCLDELLKILECKHVYGQIVI 103 (118)
Q Consensus 35 ~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~----~S~wc~~El~~~~~~~~~~~~~ii 103 (118)
..|++.|+++.+|+ +-.|.. -...+..-..-.+-+.+.++ .++....=+..+....+..+..+|
T Consensus 146 ~~l~~~G~~ialDd-fG~g~s----sl~~L~~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi 213 (259)
T 3s83_A 146 KTLRDAGAGLALDD-FGTGFS----SLSYLTRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV 213 (259)
T ss_dssp HHHHHHTCEEEEEC-C---CH----HHHHHHHSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCCEEEEEC-CCCCch----hHHHHHhCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE
Confidence 34445555666554 333321 22344444555555665554 232222223344444455555544
No 67
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=30.30 E-value=46 Score=25.68 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=32.9
Q ss_pred ccCccchHHHHHHHHccCCcceEEeCC-CC----CCccchHHHHHHHHhcCeEEE
Q 041158 23 EDTRDNFTSHLYSALCHNNIETFIDND-LK----RGDEISQSLLDTIEASTISII 72 (118)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~----~G~~~~~~i~~~i~~s~~~I~ 72 (118)
.|.|.+=+..|.+.|..+|..|.+.+- .. .|..+.+.+.++++.|+++|+
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv~ 401 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVIIS 401 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEEC
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEEE
Confidence 455667788899999999998876543 32 233345678899999998653
No 68
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=30.25 E-value=88 Score=20.28 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=33.2
Q ss_pred cchHHHHHHHHccCCcceEE-eCC-CCCCc---------cch-HHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHH
Q 041158 27 DNFTSHLYSALCHNNIETFI-DND-LKRGD---------EIS-QSLLDTIEASTISIIIFSERYASSGWCLDELLKILE 93 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi~v~~-d~~-~~~G~---------~~~-~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~ 93 (118)
...++.+.+.|+..|+.+-+ |-. ..... ... ....+.+.+++. |++.+|.|..+. ...+..+++
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~-ii~gsP~y~~~~--~~~lk~~ld 95 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAG-LALGSPTRFGNM--ASPLKYFLD 95 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSE-EEEEEECBTTBC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCE-EEEEcChhccCc--cHHHHHHHH
Confidence 35778888888888876532 211 10000 000 012456677775 456788887642 223444444
No 69
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=30.22 E-value=1.6e+02 Score=21.58 Aligned_cols=98 Identities=12% Similarity=0.210 Sum_probs=55.0
Q ss_pred eEEEEeeeccCc--cchHHHHHHHHccCCcceEEeCC---CCCCccchHHHHHHHHhcCeEEEEecCCccCch-------
Q 041158 15 GIFLSFRGEDTR--DNFTSHLYSALCHNNIETFIDND---LKRGDEISQSLLDTIEASTISIIIFSERYASSG------- 82 (118)
Q Consensus 15 dVFISys~~D~~--~~fv~~L~~~L~~~Gi~v~~d~~---~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~------- 82 (118)
-|||-|-|-|.. ..-+..|.+.|..+|++|..-.. -+.+..+...+..++-. +--|+|+-..+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~-~G~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPT-AGEFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCC-TTCEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhccc-CCeEEEEECCcchHHHHHHHhc
Confidence 589999888763 46778999999999998865321 11223333344444422 233455555543321
Q ss_pred hh-HHHHHHHH----H---hhhhCCCEEEEEEeecCCCC
Q 041158 83 WC-LDELLKIL----E---CKHVYGQIVIPVFCRVDPSH 113 (118)
Q Consensus 83 wc-~~El~~~~----~---~~~~~~~~iiPI~~~v~p~~ 113 (118)
.| ..|....+ + .....+..++-+|++++++.
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~ee 203 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREM 203 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHH
Confidence 12 11222222 1 11235678888999998764
No 70
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=29.82 E-value=96 Score=24.06 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=28.2
Q ss_pred CeeeEEEEeeec-c---CccchHHHHHHHHccCCcceEEeCC
Q 041158 12 NKHGIFLSFRGE-D---TRDNFTSHLYSALCHNNIETFIDND 49 (118)
Q Consensus 12 ~~~dVFISys~~-D---~~~~fv~~L~~~L~~~Gi~v~~d~~ 49 (118)
..++|+|---+. | .....+..|.+.|++.|++|-+|.+
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~ 327 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDR 327 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 457888765443 2 2246789999999999999999863
No 71
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=29.74 E-value=79 Score=23.27 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=29.8
Q ss_pred EEEEeeeccCccc---hHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHH-hcCeEEEE
Q 041158 16 IFLSFRGEDTRDN---FTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISIII 73 (118)
Q Consensus 16 VFISys~~D~~~~---fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~I~v 73 (118)
|.|=|...+-... ++..|.++|++.|+.+-....+..+..-...+.+.|+ .++++|+.
T Consensus 157 v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~vii~~ 218 (441)
T 1jdp_A 157 AALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMC 218 (441)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhhcCCcEEEEe
Confidence 5555554333345 7778888888888766433223333221234444444 44454443
No 72
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=29.61 E-value=53 Score=25.19 Aligned_cols=51 Identities=6% Similarity=0.103 Sum_probs=28.0
Q ss_pred EEEEeeeccCccchHHHHHHHHccCCcceEEeCCC--CCCccchHHHHHHHHh
Q 041158 16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDL--KRGDEISQSLLDTIEA 66 (118)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~--~~G~~~~~~i~~~i~~ 66 (118)
|.|=|+..|-...++..+.+++++.|+.+-..+.+ ..++.-...+...|++
T Consensus 200 V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~ 252 (496)
T 3ks9_A 200 VSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRE 252 (496)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 44445433334567788888888888876554443 2333222344555554
No 73
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=29.32 E-value=15 Score=23.47 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=40.4
Q ss_pred hHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccCchh-hHHHHHHHHHh
Q 041158 29 FTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYASSGW-CLDELLKILEC 94 (118)
Q Consensus 29 fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~w-c~~El~~~~~~ 94 (118)
-...|....+.+|+-+|.|.+ .+|+.+...|.+.+..+++ ..+.+.+..=+- ..+++..++..
T Consensus 40 ~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~h--afi~r~~~gVE~a~~~~I~~aL~~ 103 (119)
T 2fcj_A 40 RLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAEH--LYIDRAYREVAAAPIWHLAQVLLR 103 (119)
T ss_dssp HHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSEE--ECCCTTTCSTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCcE--EeccCCccCcccCCHHHHHHHHHh
Confidence 445677777788999988875 6788888888888887753 334444442111 13455566553
No 74
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=28.97 E-value=53 Score=22.05 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=27.9
Q ss_pred chHHHHHHHHccCCcceEEeCCCCCC-ccchHHHHHHHHhcCeEEEE
Q 041158 28 NFTSHLYSALCHNNIETFIDNDLKRG-DEISQSLLDTIEASTISIII 73 (118)
Q Consensus 28 ~fv~~L~~~L~~~Gi~v~~d~~~~~G-~~~~~~i~~~i~~s~~~I~v 73 (118)
.-...|.+.|++.|+.+..-.-+... +.+.+.+.+++.+++++|.-
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 45667899999999887532212211 23555666666677665543
No 75
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=28.47 E-value=1.2e+02 Score=20.82 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=22.9
Q ss_pred eeEEEEeeeccCc--cchHHHHHHHHccCCcceEE
Q 041158 14 HGIFLSFRGEDTR--DNFTSHLYSALCHNNIETFI 46 (118)
Q Consensus 14 ~dVFISys~~D~~--~~fv~~L~~~L~~~Gi~v~~ 46 (118)
.-||+.|-..|.- ...+..+.+.|++.|+.+-+
T Consensus 184 ~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~ 218 (246)
T 4f21_A 184 LPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEY 218 (246)
T ss_dssp CCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEE
T ss_pred CchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 4588888666642 34567788888888877643
No 76
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=28.36 E-value=1.7e+02 Score=21.74 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHccC-CcceEEeCCCCCCccchHHHHHHHHhcCe-EEEEecCCccC
Q 041158 33 LYSALCHN-NIETFIDNDLKRGDEISQSLLDTIEASTI-SIIIFSERYAS 80 (118)
Q Consensus 33 L~~~L~~~-Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~-~I~v~S~~~~~ 80 (118)
+.+.++.. +..+.++ +.|.....+.+.+++.+..+ .++++|..|-.
T Consensus 70 v~ea~~~~p~~DlaVi--~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e 117 (334)
T 3mwd_B 70 MADAMRKHPEVDVLIN--FASLRSAYDSTMETMNYAQIRTIAIIAEGIPE 117 (334)
T ss_dssp HHHHHHHCTTCCEEEE--CCCTTTHHHHHHHHTTSTTCCEEEECCSCCCH
T ss_pred HHHHhhcCCCCcEEEE--ecCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Confidence 44444443 3555553 34555555677778875554 78888988876
No 77
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=28.14 E-value=38 Score=22.53 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=31.3
Q ss_pred cchHHHHHHHHccCCcceEE-eCC-CCCCc----------------cchHHHHHHHHhcCeEEEEecCCccCc
Q 041158 27 DNFTSHLYSALCHNNIETFI-DND-LKRGD----------------EISQSLLDTIEASTISIIIFSERYASS 81 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi~v~~-d~~-~~~G~----------------~~~~~i~~~i~~s~~~I~v~S~~~~~S 81 (118)
...++.+.+.|+..|..+-+ |-. ..+.. .+...+.+.+.+++. |++-+|.|..+
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~-ii~gsP~y~~~ 92 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEA-IVFSSPTRFGG 92 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSE-EEEEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCE-EEEEcCccccC
Confidence 46778888888888876532 211 21000 111234556777775 56668998864
No 78
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=27.51 E-value=1e+02 Score=20.00 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=18.7
Q ss_pred CCc-cchHHHHHHHHhcCeEEEEecCCc
Q 041158 52 RGD-EISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 52 ~G~-~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
+|. .+.......++.++.+|+|++..-
T Consensus 86 ~G~~~~~~~~~~~~~~~d~iilv~D~~~ 113 (201)
T 2hup_A 86 AGQERFRTITQSYYRSANGAILAYDITK 113 (201)
T ss_dssp TTCGGGHHHHHHHHTTCSEEEEEEETTB
T ss_pred CCcHhHHHHHHHHHhhCCEEEEEEECCC
Confidence 453 344445567889999999998653
No 79
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=27.27 E-value=1.3e+02 Score=20.99 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=23.9
Q ss_pred hHHHHHHHHhc-------CeEEEEecCCccCchhhHHHHHHHHHhhhhCC
Q 041158 57 SQSLLDTIEAS-------TISIIIFSERYASSGWCLDELLKILECKHVYG 99 (118)
Q Consensus 57 ~~~i~~~i~~s-------~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~ 99 (118)
.+.+.++++.. ..+|++..++-...-+..+++..+.+..++.+
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~ 177 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHG 177 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhC
Confidence 35777788765 34555666643234444456666665444434
No 80
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=27.23 E-value=74 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=37.6
Q ss_pred CCCeeeEEEE-eee-ccCccchHHHHHHHHccCCcceE--EeCCCCCCccchHHHHHHHHhcCeEEEEecC
Q 041158 10 NSNKHGIFLS-FRG-EDTRDNFTSHLYSALCHNNIETF--IDNDLKRGDEISQSLLDTIEASTISIIIFSE 76 (118)
Q Consensus 10 ~~~~~dVFIS-ys~-~D~~~~fv~~L~~~L~~~Gi~v~--~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~ 76 (118)
....++|.|- -.+ ++.....+..|.+.|++.|++|. +|.+ .+..+...+.++=..---.++++.+
T Consensus 335 ~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr--~~~sigkk~r~Ad~~GiP~~IiVG~ 403 (454)
T 1g5h_A 335 CLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSET--VHSSLEQLHSKYDEMSVLFSVLVTE 403 (454)
T ss_dssp TTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSC--CCSCHHHHHHHHHHTTCSEEEEECH
T ss_pred ccCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCC--CCCCHHHHHHHHHHcCCCEEEEECc
Confidence 3445888887 332 13335688999999999999995 5542 1334444554443322223444443
No 81
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=27.03 E-value=1.2e+02 Score=20.00 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=25.1
Q ss_pred eeeEEEEeeeccCc--cchHHHHHHHHccCCcceEE
Q 041158 13 KHGIFLSFRGEDTR--DNFTSHLYSALCHNNIETFI 46 (118)
Q Consensus 13 ~~dVFISys~~D~~--~~fv~~L~~~L~~~Gi~v~~ 46 (118)
..-||+.|-.+|.. ...+..+.+.|++.|..+-+
T Consensus 151 ~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~ 186 (210)
T 4h0c_A 151 QTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQ 186 (210)
T ss_dssp TCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 34699999878753 24567888999999987643
No 82
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=26.94 E-value=72 Score=19.34 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHH
Q 041158 58 QSLLDTIEASTISIIIFSERYASSGWCLDELLKIL 92 (118)
Q Consensus 58 ~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~ 92 (118)
++..++|++-+.-++|+..|- ++....++....
T Consensus 28 ~~v~kai~~gkaklVilA~D~--~~~~~~~i~~~c 60 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANT--PVLRKSELEYYA 60 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTS--CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCC--CHHHHHHHHHHH
Confidence 367889998888888888887 456666665443
No 83
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=26.81 E-value=99 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=37.5
Q ss_pred CeeeEEEEeeecc-C-ccchHHHHHHHHccC--------------CcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEe
Q 041158 12 NKHGIFLSFRGED-T-RDNFTSHLYSALCHN--------------NIETFIDND-LKRGDEISQSLLDTIEASTISIIIF 74 (118)
Q Consensus 12 ~~~dVFISys~~D-~-~~~fv~~L~~~L~~~--------------Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~ 74 (118)
..++|+|---+.+ . ...++..|.+.|+.. |++|-+|.+ -..|. ++.+|-..---.++++
T Consensus 344 aP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~----k~r~Ad~~g~p~~ivv 419 (460)
T 3uh0_A 344 NPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVGY----RIKSAILKNYSYLIIV 419 (460)
T ss_dssp CSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHHH----HHHHHHHHTCSEEEEE
T ss_pred CCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHHH----HHHHHHHcCCCEEEEE
Confidence 4578877543332 1 246889999999988 999999875 44444 4444444333344555
Q ss_pred cC
Q 041158 75 SE 76 (118)
Q Consensus 75 S~ 76 (118)
.+
T Consensus 420 G~ 421 (460)
T 3uh0_A 420 GD 421 (460)
T ss_dssp CH
T ss_pred cc
Confidence 54
No 84
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=26.59 E-value=20 Score=21.12 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHhcCeEEEEecCCccCchhhHHHHHHHHHh
Q 041158 63 TIEASTISIIIFSERYASSGWCLDELLKILEC 94 (118)
Q Consensus 63 ~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~ 94 (118)
.+.++.+.++|+|++-.--.|+-..+..+++.
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 56788999999999865545554455555553
No 85
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=26.55 E-value=95 Score=22.23 Aligned_cols=53 Identities=6% Similarity=-0.034 Sum_probs=32.7
Q ss_pred eEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCc-cchHHHHHHHHhcC
Q 041158 15 GIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGD-EISQSLLDTIEAST 68 (118)
Q Consensus 15 dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~-~~~~~i~~~i~~s~ 68 (118)
.|.|-|...+-....+..+.+.|++.|+.+-....+.+|. ++. .+...|..+.
T Consensus 143 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~-~~l~~i~~~~ 196 (374)
T 3n0x_A 143 TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFT-AVGQRLFDAL 196 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCH-HHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHH-HHHHHHHhcC
Confidence 4666564333234567888899999998876544455553 444 4555666554
No 86
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=26.52 E-value=1.7e+02 Score=20.48 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=36.3
Q ss_pred chHHHHHHHHccCCcceEE-eCC-C--CCCc----cchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHH
Q 041158 28 NFTSHLYSALCHNNIETFI-DND-L--KRGD----EISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILE 93 (118)
Q Consensus 28 ~fv~~L~~~L~~~Gi~v~~-d~~-~--~~G~----~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~ 93 (118)
..+..+.+.|+..|..+-+ |=. + ...+ .-...+.+.|.+++.+ ++.||.|..+--- -|..+++
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~i-I~~sP~Yn~sipa--~LKn~iD 122 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQ-VWVSPERHGAMTG--IMKAQID 122 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEE-EEEEECSSSSCCH--HHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEE-EEEeCCCCCCccH--HHHHHHH
Confidence 4667777777777876543 211 2 1111 1124677788888865 5579999875322 3344444
No 87
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=25.84 E-value=1.5e+02 Score=22.87 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=27.3
Q ss_pred CccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhhhhCC-CEEEEEEee
Q 041158 53 GDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYG-QIVIPVFCR 108 (118)
Q Consensus 53 G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~-~~iiPI~~~ 108 (118)
|+.+.+.+.++|++++..|.+.+--++.++-...++..++....++| .+-+-|+++
T Consensus 64 g~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~~g~~i~~aL~~aa~rGp~V~Vril~D 120 (506)
T 1v0w_A 64 TKRLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNKLKVRILVG 120 (506)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEESSCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccEEEEEEeeccCCChHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 45555566666666666666655443233333345555544332223 244444443
No 88
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=25.78 E-value=28 Score=27.67 Aligned_cols=51 Identities=12% Similarity=-0.059 Sum_probs=34.7
Q ss_pred CCCCeeeEEEEeeec---------cCccchHHHHHHHHccCCcceEEeCC-C-CCCccchHH
Q 041158 9 RNSNKHGIFLSFRGE---------DTRDNFTSHLYSALCHNNIETFIDND-L-KRGDEISQS 59 (118)
Q Consensus 9 ~~~~~~dVFISys~~---------D~~~~fv~~L~~~L~~~Gi~v~~d~~-~-~~G~~~~~~ 59 (118)
.....++|.|-=-+. +.-...+..|++.|...|++|-+|.+ - .+|..+.+.
T Consensus 304 ~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~a 365 (519)
T 4hvc_A 304 PRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHW 365 (519)
T ss_dssp TTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHH
T ss_pred ccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
Confidence 344568887643221 22246789999999999999999876 3 577665543
No 89
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=25.52 E-value=1.5e+02 Score=19.69 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=14.9
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEec
Q 041158 50 LKRGDEISQSLLDTIEASTISIIIFS 75 (118)
Q Consensus 50 ~~~G~~~~~~i~~~i~~s~~~I~v~S 75 (118)
+..|+...+.+.++|+.++..|-|..
T Consensus 41 ~~~~~~~~~~ll~~I~~A~~sI~i~~ 66 (196)
T 4ggj_A 41 LPHSESSLSRLLRALLAARSSLELCL 66 (196)
T ss_dssp SCCSCCHHHHHHHHHHTCSSEEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhheEEEEEE
Confidence 44555555566666666666555544
No 90
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=25.29 E-value=1.1e+02 Score=22.08 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=17.9
Q ss_pred hHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcC
Q 041158 29 FTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEAST 68 (118)
Q Consensus 29 fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~ 68 (118)
++..+.+.+++.|+.+-... +.+|..-...+...|+.++
T Consensus 153 ~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~i~~~~ 191 (395)
T 3h6g_A 153 RLQELIKAPSRYNLRLKIRQ-LPADTKDAKPLLKEMKRGK 191 (395)
T ss_dssp HTHHHHTGGGTSSCEEEEEE-CCSSGGGGHHHHHHHHHTT
T ss_pred HHHHHHHhhhcCCceEEEEE-eCCCchhHHHHHHHHhhcC
Confidence 44445555555565554332 4444322234444555443
No 91
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=25.22 E-value=1.6e+02 Score=21.97 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=36.6
Q ss_pred CeeeEEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCC
Q 041158 12 NKHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSER 77 (118)
Q Consensus 12 ~~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~ 77 (118)
..+||+|..-+.+. ...+..|.+.|++. ++|-+|.+ +..+...+..|=..---.++++.++
T Consensus 327 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~-i~v~~d~~---~~~~~~~~~~a~~~g~p~~iivG~~ 387 (421)
T 1h4v_B 327 KGPDLYLIPLTEEA-VAEAFYLAEALRPR-LRAEYALA---PRKPAKGLEEALKRGAAFAGFLGED 387 (421)
T ss_pred CCCeEEEEECChHH-HHHHHHHHHHHHhc-CEEEEecC---CCCHHHHHHHHHhCCCCEEEEECch
Confidence 45789886544332 46788999999998 99988753 2334434444333222245555554
No 92
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=25.05 E-value=80 Score=24.27 Aligned_cols=52 Identities=13% Similarity=0.320 Sum_probs=36.5
Q ss_pred ccCccchHHHHHHHHccC-CcceEEeCC-CCCCccchHHHHHHHHhcCeEEEEec
Q 041158 23 EDTRDNFTSHLYSALCHN-NIETFIDND-LKRGDEISQSLLDTIEASTISIIIFS 75 (118)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~-Gi~v~~d~~-~~~G~~~~~~i~~~i~~s~~~I~v~S 75 (118)
.|.|.+=+-.|.+.|.++ |..|.+.+- .... .....+.++++.++.+|+...
T Consensus 330 dD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 330 DDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp CCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSC
T ss_pred cchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecC
Confidence 556677788999999999 998876543 3322 233456788899988766554
No 93
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=24.97 E-value=87 Score=24.18 Aligned_cols=36 Identities=8% Similarity=-0.089 Sum_probs=22.8
Q ss_pred EEEEeeeccCccchHHHHHHHHccCCcceEEeCCCC
Q 041158 16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLK 51 (118)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~ 51 (118)
|.|=|+..|-...++..|.++|++.|+.+-....+.
T Consensus 189 V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~ 224 (555)
T 2e4u_A 189 VSTVASEGDYGETGIEAFEQEARLRNICIATAEKVG 224 (555)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred EEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeC
Confidence 444455444345677888888888898775444443
No 94
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=24.90 E-value=1.1e+02 Score=19.57 Aligned_cols=24 Identities=4% Similarity=-0.040 Sum_probs=16.8
Q ss_pred cchHHHHHHHHhcCeEEEEecCCc
Q 041158 55 EISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 55 ~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
.+.......++.++.+|+|++..-
T Consensus 69 ~~~~~~~~~~~~~d~ii~v~d~~~ 92 (203)
T 1zbd_A 69 RYRTITTAYYRGAMGFILMYDITN 92 (203)
T ss_dssp GGHHHHHTTGGGCSEEEEEEETTC
T ss_pred hhcchHHHhhcCCCEEEEEEECcC
Confidence 344445557788999999998653
No 95
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=24.84 E-value=26 Score=27.08 Aligned_cols=36 Identities=6% Similarity=0.044 Sum_probs=27.1
Q ss_pred eeeEEEEeeec-----cCccchHHHHHHHHccCCcceEEeC
Q 041158 13 KHGIFLSFRGE-----DTRDNFTSHLYSALCHNNIETFIDN 48 (118)
Q Consensus 13 ~~dVFISys~~-----D~~~~fv~~L~~~L~~~Gi~v~~d~ 48 (118)
.++|+|-.-+. +.....+..|++.|+..|++|-+|.
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~ 378 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKG 378 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 46787765441 2234688999999999999999986
No 96
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.35 E-value=53 Score=21.65 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=25.9
Q ss_pred chHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHH-hcCeEEE
Q 041158 28 NFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIE-ASTISII 72 (118)
Q Consensus 28 ~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~-~s~~~I~ 72 (118)
.-...|.+.|++.|+.+..-.-+...+.+.+.+.++++ +++++|.
T Consensus 27 sn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVit 72 (164)
T 3pzy_A 27 RCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILT 72 (164)
T ss_dssp CHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 45667889999999876422112211345556666664 5555443
No 97
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=24.14 E-value=1.4e+02 Score=18.67 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=18.8
Q ss_pred CC-ccchHHHHHHHHhcCeEEEEecCCc
Q 041158 52 RG-DEISQSLLDTIEASTISIIIFSERY 78 (118)
Q Consensus 52 ~G-~~~~~~i~~~i~~s~~~I~v~S~~~ 78 (118)
|| +.+.......++.++.+|+|++.+-
T Consensus 101 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~ 128 (208)
T 3clv_A 101 AGQERYASIVPLYYRGATCAIVVFDISN 128 (208)
T ss_dssp TTGGGCTTTHHHHHTTCSEEEEEEETTC
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 44 3344455667889999999998653
No 98
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=23.87 E-value=1.9e+02 Score=20.30 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCeEEEEecCCccC-chhhHHHHHHHHHhhhhCC
Q 041158 57 SQSLLDTIEASTISIIIFSERYAS-SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 57 ~~~i~~~i~~s~~~I~v~S~~~~~-S~wc~~El~~~~~~~~~~~ 99 (118)
.+.+.+++..-..+|++.+|+.-. .-+..+++..+.+..++.+
T Consensus 140 ~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 183 (377)
T 3fdb_A 140 LHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYD 183 (377)
T ss_dssp HHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 357778887666788888886443 3455667777777555544
No 99
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=22.97 E-value=1.6e+02 Score=20.03 Aligned_cols=40 Identities=3% Similarity=0.086 Sum_probs=18.7
Q ss_pred HHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCcc
Q 041158 35 SALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYA 79 (118)
Q Consensus 35 ~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~ 79 (118)
..|++.|+++.+|+ +-.|.. -...+..-..-.+-+.+.++
T Consensus 150 ~~L~~~G~~ialDd-fG~g~s----~l~~L~~l~~d~iKiD~~~v 189 (250)
T 4f3h_A 150 ASVSAMGCKVGLEQ-FGSGLD----SFQLLAHFQPAFLKLDRSIT 189 (250)
T ss_dssp HHHHTTTCEEEEEE-ETSSTH----HHHHHTTSCCSEEEECHHHH
T ss_pred HHHHHCCCEEEEeC-CCCCch----HHHHHhhCCCCEEEECHHHH
Confidence 44445566666654 333321 22334444455555555554
No 100
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=22.95 E-value=1.2e+02 Score=22.77 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=33.5
Q ss_pred ccCccchHHHHHHHHccCCcceEEeCC-CCCCc-----cchHHHHHHHHhcCeEEE
Q 041158 23 EDTRDNFTSHLYSALCHNNIETFIDND-LKRGD-----EISQSLLDTIEASTISII 72 (118)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~~G~-----~~~~~i~~~i~~s~~~I~ 72 (118)
.|.|.+=+-.|.+.|.++|..|.+.+- +.... .+.+...++++.++.+|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 455677788899999989988876443 43321 122346677888888776
No 101
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=22.94 E-value=1.6e+02 Score=20.94 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=26.7
Q ss_pred hHHHHHHHHhcCeEEEEecCCccC-chhhHHHHHHHHHhhhhCC
Q 041158 57 SQSLLDTIEASTISIIIFSERYAS-SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 57 ~~~i~~~i~~s~~~I~v~S~~~~~-S~wc~~El~~~~~~~~~~~ 99 (118)
.+.+.+++..-...|++.+|+.-. .-+..+++..+.+..++.+
T Consensus 169 ~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~ 212 (407)
T 3nra_A 169 LTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYG 212 (407)
T ss_dssp HHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcC
Confidence 357777887656677788886542 3455556666666444433
No 102
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=22.91 E-value=1.5e+02 Score=18.80 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=31.7
Q ss_pred cchHHHHHHHHccCCcceEEeCCCCCCccchHHHHHHHHhcCeEEEEecCCccC
Q 041158 27 DNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASTISIIIFSERYAS 80 (118)
Q Consensus 27 ~~fv~~L~~~L~~~Gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~I~v~S~~~~~ 80 (118)
+..|+.|.+.|...|+.+-+-+ + .+.-.+.+...+.+++. |++-||.|..
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~-~--~~~~~~~~~~~~~~~d~-ii~Gspty~g 64 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVD-L--RAVDPQELIEAVSSARG-IVLGTPPSQP 64 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE-T--TTCCHHHHHHHHHHCSE-EEEECCBSSC
T ss_pred HHHHHHHHHHHHhCCCeEEEEE-C--CCCCHHHHHHHHHhCCE-EEEEcCCcCC
Confidence 4688999999998898753311 1 11112345555667775 5667999964
No 103
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.69 E-value=84 Score=20.47 Aligned_cols=44 Identities=9% Similarity=-0.035 Sum_probs=25.6
Q ss_pred chHHHHHHHHccCCcceEEeCCCCCC-ccchHHHHHHHH--hcCeEE
Q 041158 28 NFTSHLYSALCHNNIETFIDNDLKRG-DEISQSLLDTIE--ASTISI 71 (118)
Q Consensus 28 ~fv~~L~~~L~~~Gi~v~~d~~~~~G-~~~~~~i~~~i~--~s~~~I 71 (118)
.-...|.+.|++.|+.+-.-.-+... +.+.+.+.++++ +++++|
T Consensus 21 ~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVi 67 (164)
T 2is8_A 21 TTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLIL 67 (164)
T ss_dssp CHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEE
T ss_pred chHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 45567999999999876432212211 235556666666 455443
No 104
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=22.67 E-value=87 Score=20.28 Aligned_cols=52 Identities=6% Similarity=0.070 Sum_probs=28.8
Q ss_pred cchHHHHHHHHcc-CCcceEE-eCC-CCCCc------------cchHHHHHHHHhcCeEEEEecCCccCc
Q 041158 27 DNFTSHLYSALCH-NNIETFI-DND-LKRGD------------EISQSLLDTIEASTISIIIFSERYASS 81 (118)
Q Consensus 27 ~~fv~~L~~~L~~-~Gi~v~~-d~~-~~~G~------------~~~~~i~~~i~~s~~~I~v~S~~~~~S 81 (118)
...++.+.+.|+. .|..+-+ |-. ..+++ ... . .+.+.+++. |++.||.|..+
T Consensus 16 ~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~aD~-ii~gsP~y~~~ 82 (198)
T 3b6i_A 16 ETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVA-T-PQELADYDA-IIFGTPTRFGN 82 (198)
T ss_dssp HHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBC-C-GGGGGGCSE-EEEEEEEETTE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchh-h-HHHHHHCCE-EEEEeChhcCC
Confidence 3577888888887 7876532 211 11110 000 0 345566664 56678888654
No 105
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=22.66 E-value=33 Score=20.81 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHhcCeEEEEecCCccCchhhHHHHHHHHHh
Q 041158 63 TIEASTISIIIFSERYASSGWCLDELLKILEC 94 (118)
Q Consensus 63 ~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~ 94 (118)
.+.++.+.++|+||+=--..||-..+..++++
T Consensus 36 vLCda~Valiifs~~gk~~~f~s~~~~~il~r 67 (90)
T 3p57_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (90)
T ss_dssp HHHTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred hccCCceEEEEECCCCCEEEeCCCCHHHHHHH
Confidence 56789999999999855455554445555543
No 106
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=22.57 E-value=1.6e+02 Score=20.72 Aligned_cols=33 Identities=18% Similarity=0.043 Sum_probs=21.3
Q ss_pred eeEEEEeeeccCc--cchHHHHHHHHccCCcceEE
Q 041158 14 HGIFLSFRGEDTR--DNFTSHLYSALCHNNIETFI 46 (118)
Q Consensus 14 ~dVFISys~~D~~--~~fv~~L~~~L~~~Gi~v~~ 46 (118)
.-||+.|-..|.- -..+..+.+.|++.|+.+-+
T Consensus 206 ~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~ 240 (285)
T 4fhz_A 206 PPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYG 240 (285)
T ss_dssp CCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEE
T ss_pred CcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEE
Confidence 3478877666642 23456777778777877654
No 107
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=22.43 E-value=82 Score=24.26 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=40.1
Q ss_pred ccCccchHHHHHHHHccCCcceEEeCC-CC-------CCccchHHHHHHHHhcCeEEEEecC-CccCchh
Q 041158 23 EDTRDNFTSHLYSALCHNNIETFIDND-LK-------RGDEISQSLLDTIEASTISIIIFSE-RYASSGW 83 (118)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~Gi~v~~d~~-~~-------~G~~~~~~i~~~i~~s~~~I~v~S~-~~~~S~w 83 (118)
.|.|.+=+-.|.+.|.++|..|.+.+- .. ++-.+.+...++++.++.+|++..- .|.+=+|
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 455667788999999999998876442 21 2434445677889999987665443 3444333
No 108
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=22.21 E-value=2.1e+02 Score=20.59 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=21.2
Q ss_pred eeeEEEEeeeccCccchHHHHHHHHccCCcceEEeC
Q 041158 13 KHGIFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN 48 (118)
Q Consensus 13 ~~dVFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~ 48 (118)
++=|+++-.+... .....+.+.|+.+|+.+.+..
T Consensus 31 ~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~ 64 (332)
T 2bon_A 31 ASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRV 64 (332)
T ss_dssp CEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEE
Confidence 3445555433322 456788899999998876543
No 109
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=22.08 E-value=1.8e+02 Score=20.96 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=23.3
Q ss_pred HHHHHHHHh----cCeEEEEecCCccC---chhhHHHHHHHHHhhhhCC
Q 041158 58 QSLLDTIEA----STISIIIFSERYAS---SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 58 ~~i~~~i~~----s~~~I~v~S~~~~~---S~wc~~El~~~~~~~~~~~ 99 (118)
+.+.+++++ .+..++++.|+..+ -.+..+++..+.+..++.+
T Consensus 185 ~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~ 233 (426)
T 1sff_A 185 ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233 (426)
T ss_dssp HHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 456667764 45567777775443 2344555555555444434
No 110
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=21.98 E-value=1.6e+02 Score=18.73 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=24.8
Q ss_pred CeEEEEecCCccCchhhHHHHHHHH---HhhhhCCCEEEEEEeecCCC
Q 041158 68 TISIIIFSERYASSGWCLDELLKIL---ECKHVYGQIVIPVFCRVDPS 112 (118)
Q Consensus 68 ~~~I~v~S~~~~~S~wc~~El~~~~---~~~~~~~~~iiPI~~~v~p~ 112 (118)
+++|+-|--.+.. .||..++..+. +..++.+..+..|++.++|.
T Consensus 33 k~vll~F~~t~Cp-~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 33 KVWVADFMFTNCQ-TVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEEEECTTCS-SSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CEEEEEEECCCCC-CcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 5666655544443 47866655443 33334455677777777664
No 111
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=21.96 E-value=2.3e+02 Score=20.40 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHHh-----cCeEEEEecC--CccCchhhHHHHHHHHHhhh
Q 041158 58 QSLLDTIEA-----STISIIIFSE--RYASSGWCLDELLKILECKH 96 (118)
Q Consensus 58 ~~i~~~i~~-----s~~~I~v~S~--~~~~S~wc~~El~~~~~~~~ 96 (118)
+.+.+++.. .+.++++-+| |-...-|..+|+..+.+..+
T Consensus 164 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 209 (413)
T 3t18_A 164 DVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLK 209 (413)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 567777765 3336666677 33456677888888777544
No 112
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=21.88 E-value=1.3e+02 Score=18.73 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=17.8
Q ss_pred cchHHHHHHHHhcCeEEEEecCC
Q 041158 55 EISQSLLDTIEASTISIIIFSER 77 (118)
Q Consensus 55 ~~~~~i~~~i~~s~~~I~v~S~~ 77 (118)
.+.......++.++.+|+|++.+
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSA 108 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECC
T ss_pred HHHHHHHHHHhcCCEEEEEEECC
Confidence 34555556888999999999887
No 113
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=21.76 E-value=1.1e+02 Score=22.15 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=35.3
Q ss_pred EEEEeeeccCccchHHHHHHHHccCCc-ce-EEeCCCCCCccchHHHHHHHHhcCeEEE
Q 041158 16 IFLSFRGEDTRDNFTSHLYSALCHNNI-ET-FIDNDLKRGDEISQSLLDTIEASTISII 72 (118)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~Gi-~v-~~d~~~~~G~~~~~~i~~~i~~s~~~I~ 72 (118)
+||-+.+.|. ..++...++.|++.|+ .+ .++-+ .+.+.-.+.+.+.|++++.+.+
T Consensus 60 ~~IptAs~~~-~~~~~~~~~~f~~lG~~~v~~L~i~-~r~~a~~~~~~~~l~~ad~I~v 116 (291)
T 3en0_A 60 GIIPSASREP-LLIGERYQTIFSDMGVKELKVLDIR-DRAQGDDSGYRLFVEQCTGIFM 116 (291)
T ss_dssp EEECTTCSSH-HHHHHHHHHHHHHHCCSEEEECCCC-SGGGGGCHHHHHHHHHCSEEEE
T ss_pred EEEeCCCCCh-HHHHHHHHHHHHHcCCCeeEEEEec-CccccCCHHHHHHHhcCCEEEE
Confidence 5888877664 3577778888888888 44 23321 1223334577889998887655
No 114
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=21.62 E-value=1.3e+02 Score=24.07 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=29.7
Q ss_pred EEEEeeeccCccchHHHHHHHHccCCcceEEeCCCCCC-----ccchHHHHHHHHhcC
Q 041158 16 IFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRG-----DEISQSLLDTIEAST 68 (118)
Q Consensus 16 VFISys~~D~~~~fv~~L~~~L~~~Gi~v~~d~~~~~G-----~~~~~~i~~~i~~s~ 68 (118)
|-|=| ..|.....+..+.++++++|+.+-....+..+ .++. .+...|+.+.
T Consensus 124 v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~-~~l~~i~~~~ 179 (823)
T 3kg2_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYR-SLFQDLELKK 179 (823)
T ss_dssp EEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTT-THHHHTTTTT
T ss_pred EEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHH-HHHHHHHhcC
Confidence 44445 33445677888888898888877554433333 3343 3445555544
No 115
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=21.55 E-value=1e+02 Score=22.50 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=24.6
Q ss_pred HHHHHHHHh---cCeEEEEecCCcc-C---chhhHHHHHHHHHhhhhCC
Q 041158 58 QSLLDTIEA---STISIIIFSERYA-S---SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 58 ~~i~~~i~~---s~~~I~v~S~~~~-~---S~wc~~El~~~~~~~~~~~ 99 (118)
+.+.++|++ -+..++++.|..- . -.|..+++..+.+..++.+
T Consensus 177 ~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~ 225 (430)
T 3i4j_A 177 EGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAG 225 (430)
T ss_dssp THHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcC
Confidence 567777774 5667777888663 2 2444445555555444434
No 116
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=21.42 E-value=2.2e+02 Score=20.00 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=22.1
Q ss_pred chHHHHHHHHccCCcceEEeCCCCCCc-cchHHHHHHHHhcC
Q 041158 28 NFTSHLYSALCHNNIETFIDNDLKRGD-EISQSLLDTIEAST 68 (118)
Q Consensus 28 ~fv~~L~~~L~~~Gi~v~~d~~~~~G~-~~~~~i~~~i~~s~ 68 (118)
.....+.++|++.|+.+-....+..|. .+. ...+.+.+++
T Consensus 166 ~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~-~~~~~l~~~~ 206 (375)
T 4evq_A 166 EMVSGFKKSFTAGKGEVVKDITIAFPDVEFQ-SALAEIASLK 206 (375)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTCCCCH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCCccHH-HHHHHHHhcC
Confidence 355667788888888764333244443 333 4444555444
No 117
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=21.37 E-value=41 Score=18.12 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHccCCcce
Q 041158 30 TSHLYSALCHNNIET 44 (118)
Q Consensus 30 v~~L~~~L~~~Gi~v 44 (118)
|..|++.|..+|+.+
T Consensus 10 V~eLK~~Lk~RGL~~ 24 (51)
T 1h1j_S 10 VVQLKDLLTKRNLSV 24 (51)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 578999999999865
No 118
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=21.31 E-value=1.5e+02 Score=20.91 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCeEEEEecCCccC-chhhHHHHHHHHHhhhhCC
Q 041158 58 QSLLDTIEASTISIIIFSERYAS-SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 58 ~~i~~~i~~s~~~I~v~S~~~~~-S~wc~~El~~~~~~~~~~~ 99 (118)
+.+.++++. ..+|++.+|+.-. .-+...++..+.+..++.+
T Consensus 156 ~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 197 (391)
T 4dq6_A 156 EDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHN 197 (391)
T ss_dssp HHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 577778877 6667777876543 3344466777666555544
No 119
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=21.22 E-value=2.1e+02 Score=20.64 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=25.8
Q ss_pred HHHHHHHHh-cCeEEEEecCCccC-chhhHHHHHHHHHhhhhCCC
Q 041158 58 QSLLDTIEA-STISIIIFSERYAS-SGWCLDELLKILECKHVYGQ 100 (118)
Q Consensus 58 ~~i~~~i~~-s~~~I~v~S~~~~~-S~wc~~El~~~~~~~~~~~~ 100 (118)
+.+.+++++ -..+|++.+|+.-. .-+..+++..+.+..++.+.
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~ 216 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDV 216 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc
Confidence 567778833 34566667886533 34556677777765555553
No 120
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=21.20 E-value=2.3e+02 Score=20.30 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHHHhc---CeEEEEecCCccC-chhhHHHHHHHHHhhhhCC
Q 041158 58 QSLLDTIEAS---TISIIIFSERYAS-SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 58 ~~i~~~i~~s---~~~I~v~S~~~~~-S~wc~~El~~~~~~~~~~~ 99 (118)
+.+.+++... ++++++.+|+.-. .-+...++..+.+..++.+
T Consensus 164 ~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~ 209 (412)
T 1yaa_A 164 NGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKN 209 (412)
T ss_dssp HHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 5677777764 3455557777643 3455667777776555544
No 121
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=20.85 E-value=1.7e+02 Score=20.58 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCeEEEEecCCccC-chhhHHHHHHHHHhhhhCC
Q 041158 58 QSLLDTIEASTISIIIFSERYAS-SGWCLDELLKILECKHVYG 99 (118)
Q Consensus 58 ~~i~~~i~~s~~~I~v~S~~~~~-S~wc~~El~~~~~~~~~~~ 99 (118)
+.+.+++..-..+|++.+|+.-. .-+..+++..+.+..++.+
T Consensus 147 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 189 (383)
T 3kax_A 147 EHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYN 189 (383)
T ss_dssp HHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCC
Confidence 57777775444566677776543 3455667777766544434
No 122
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=20.51 E-value=2.4e+02 Score=20.25 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=24.6
Q ss_pred HHHHHHHHh-----cCeEEEEecC--CccCchhhHHHHHHHHHhhh
Q 041158 58 QSLLDTIEA-----STISIIIFSE--RYASSGWCLDELLKILECKH 96 (118)
Q Consensus 58 ~~i~~~i~~-----s~~~I~v~S~--~~~~S~wc~~El~~~~~~~~ 96 (118)
+.+.+++.+ .+.+|++-+| |-....+..+|+..+.+..+
T Consensus 165 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 210 (418)
T 3rq1_A 165 EAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLK 210 (418)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 567777764 3346666677 33455667778887777544
No 123
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=20.19 E-value=2.3e+02 Score=19.77 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=28.4
Q ss_pred CCccchHHHHHHHHhcCeEEEEecCCccCchhhHHHHHHHHHhhhhCCCEEEEEEee
Q 041158 52 RGDEISQSLLDTIEASTISIIIFSERYASSGWCLDELLKILECKHVYGQIVIPVFCR 108 (118)
Q Consensus 52 ~G~~~~~~i~~~i~~s~~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~iiPI~~~ 108 (118)
.-+.+.+.+.+.|++++.-|.+.-+ +.-+.+|...+....++|-.|.-+.+.
T Consensus 7 ~~e~Ii~r~~e~I~~A~~el~lsi~-----~e~l~~l~~~L~~A~~rGV~V~liv~~ 58 (233)
T 2f5t_X 7 SFDEAIEMFRESLYSAKNEVIVVTP-----SEFFETIREDLIKTLERGVTVSLYIDK 58 (233)
T ss_dssp CHHHHHHHHHHHHHTCSSEEEEEEC-----GGGHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CHHHHHHHHHHHHHHhhhEEEEEeC-----HHHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 3345566777777777765554111 122345555555555566666666554
Done!