Query 041159
Match_columns 356
No_of_seqs 265 out of 726
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:20:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 1.4E-69 3E-74 534.3 17.0 350 1-351 105-471 (475)
2 PF04577 DUF563: Protein of un 100.0 2.8E-30 6E-35 233.8 20.7 198 68-288 1-204 (206)
3 COG4421 Capsular polysaccharid 99.8 2.2E-19 4.7E-24 170.3 15.8 198 58-287 122-327 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 92.1 1.2 2.7E-05 38.4 9.0 80 164-259 18-98 (140)
5 PRK14178 bifunctional 5,10-met 83.2 7.5 0.00016 37.5 8.9 73 182-262 152-225 (279)
6 PF02882 THF_DHG_CYH_C: Tetrah 82.0 16 0.00035 32.2 9.9 70 183-260 37-107 (160)
7 cd01971 Nitrogenase_VnfN_like 77.1 3.2 6.9E-05 42.2 4.5 100 181-283 154-261 (427)
8 PRK14194 bifunctional 5,10-met 75.9 26 0.00056 34.2 10.1 72 182-261 159-231 (301)
9 PRK14179 bifunctional 5,10-met 74.4 25 0.00055 34.0 9.6 80 165-260 149-229 (284)
10 PRK14188 bifunctional 5,10-met 73.8 30 0.00065 33.7 10.0 71 182-260 158-229 (296)
11 cd00316 Oxidoreductase_nitroge 70.6 12 0.00025 37.2 6.7 98 180-282 150-251 (399)
12 cd01080 NAD_bind_m-THF_DH_Cycl 70.3 9.9 0.00021 33.7 5.4 73 181-261 43-116 (168)
13 PF01520 Amidase_3: N-acetylmu 64.7 17 0.00038 31.5 5.8 47 202-248 33-82 (175)
14 cd01967 Nitrogenase_MoFe_alpha 64.1 27 0.00059 34.9 7.8 97 181-282 159-258 (406)
15 PRK14174 bifunctional 5,10-met 63.8 23 0.00051 34.4 6.9 80 164-261 149-235 (295)
16 PF00389 2-Hacid_dh: D-isomer 63.4 18 0.00039 30.1 5.4 78 200-285 9-87 (133)
17 cd02696 MurNAc-LAA N-acetylmur 63.1 23 0.00049 30.8 6.3 46 202-247 34-82 (172)
18 TIGR02853 spore_dpaA dipicolin 62.2 38 0.00083 32.6 8.1 58 224-286 200-260 (287)
19 PRK14191 bifunctional 5,10-met 61.7 43 0.00093 32.4 8.3 71 183-261 158-229 (285)
20 PF05222 AlaDh_PNT_N: Alanine 61.5 69 0.0015 27.2 8.8 92 194-289 11-116 (136)
21 PRK14189 bifunctional 5,10-met 58.8 68 0.0015 31.1 9.1 81 164-260 148-229 (285)
22 COG0190 FolD 5,10-methylene-te 58.5 52 0.0011 31.9 8.1 72 181-260 155-227 (283)
23 TIGR02883 spore_cwlD N-acetylm 58.3 28 0.00061 31.1 6.1 46 202-247 35-97 (189)
24 PRK08306 dipicolinate synthase 57.5 43 0.00094 32.3 7.7 58 226-288 203-263 (296)
25 COG3959 Transketolase, N-termi 56.9 21 0.00045 33.5 5.0 48 184-234 173-226 (243)
26 PLN02897 tetrahydrofolate dehy 56.7 66 0.0014 32.0 8.8 71 182-260 214-285 (345)
27 cd01972 Nitrogenase_VnfE_like 56.0 19 0.00041 36.6 5.0 99 181-282 160-265 (426)
28 PRK14190 bifunctional 5,10-met 55.1 86 0.0019 30.3 9.1 72 182-261 158-230 (284)
29 PRK10319 N-acetylmuramoyl-l-al 54.0 31 0.00066 33.4 5.9 55 203-262 92-149 (287)
30 cd01980 Chlide_reductase_Y Chl 53.0 14 0.00031 37.3 3.7 95 182-283 159-254 (416)
31 PRK14171 bifunctional 5,10-met 52.6 1.1E+02 0.0023 29.8 9.4 81 164-260 149-230 (288)
32 PRK14177 bifunctional 5,10-met 52.1 1.2E+02 0.0025 29.5 9.4 81 164-260 149-230 (284)
33 PRK14170 bifunctional 5,10-met 51.8 1.1E+02 0.0024 29.6 9.3 80 165-260 148-228 (284)
34 cd01981 Pchlide_reductase_B Pc 50.9 26 0.00056 35.5 5.1 99 182-283 162-265 (430)
35 PRK08306 dipicolinate synthase 50.6 83 0.0018 30.3 8.3 82 200-288 15-121 (296)
36 PF00148 Oxidored_nitro: Nitro 50.3 18 0.00039 36.0 3.8 98 180-281 142-243 (398)
37 PRK14175 bifunctional 5,10-met 50.2 35 0.00075 33.1 5.6 71 183-261 159-230 (286)
38 PRK14169 bifunctional 5,10-met 47.7 1.5E+02 0.0032 28.7 9.5 70 183-260 157-227 (282)
39 PRK14172 bifunctional 5,10-met 46.7 1.6E+02 0.0034 28.5 9.4 70 183-260 159-229 (278)
40 PRK02910 light-independent pro 46.4 40 0.00088 35.2 5.8 101 180-283 156-261 (519)
41 PRK14182 bifunctional 5,10-met 46.1 1.7E+02 0.0036 28.4 9.5 70 183-260 158-228 (282)
42 PLN02616 tetrahydrofolate dehy 45.8 1.3E+02 0.0028 30.2 8.9 70 183-260 232-302 (364)
43 PRK13337 putative lipid kinase 45.1 1.7E+02 0.0037 28.0 9.6 68 197-264 19-92 (304)
44 PRK14173 bifunctional 5,10-met 45.0 1.6E+02 0.0035 28.5 9.3 80 165-260 146-226 (287)
45 TIGR03702 lip_kinase_YegS lipi 44.9 1.6E+02 0.0035 28.0 9.3 67 198-264 15-89 (293)
46 PRK12548 shikimate 5-dehydroge 44.5 1.1E+02 0.0024 29.3 8.2 94 184-285 152-256 (289)
47 PRK10792 bifunctional 5,10-met 43.7 1.7E+02 0.0036 28.4 9.1 72 182-261 159-231 (285)
48 PRK14166 bifunctional 5,10-met 43.7 1.8E+02 0.0038 28.2 9.3 70 183-260 158-228 (282)
49 PRK14183 bifunctional 5,10-met 42.7 1.9E+02 0.0042 27.9 9.4 82 164-261 147-229 (281)
50 PRK14186 bifunctional 5,10-met 42.6 1.9E+02 0.0042 28.2 9.4 70 183-260 159-229 (297)
51 PRK14181 bifunctional 5,10-met 41.8 2E+02 0.0044 27.9 9.3 80 165-260 144-228 (287)
52 PRK14180 bifunctional 5,10-met 41.7 1.5E+02 0.0032 28.8 8.4 70 183-260 159-229 (282)
53 PF03193 DUF258: Protein of un 41.3 48 0.001 29.3 4.7 53 200-252 2-58 (161)
54 PRK14187 bifunctional 5,10-met 39.8 2.2E+02 0.0047 27.8 9.3 70 183-260 161-231 (294)
55 PRK14176 bifunctional 5,10-met 39.8 2.2E+02 0.0048 27.6 9.3 71 183-261 165-236 (287)
56 PLN02516 methylenetetrahydrofo 39.8 2.2E+02 0.0048 27.8 9.3 71 183-261 168-239 (299)
57 COG1597 LCB5 Sphingosine kinas 38.8 2.3E+02 0.0049 27.4 9.4 91 185-283 6-104 (301)
58 PRK14193 bifunctional 5,10-met 38.8 2.3E+02 0.005 27.5 9.2 80 165-260 149-231 (284)
59 PRK02261 methylaspartate mutas 38.3 1.4E+02 0.0031 25.4 7.0 54 181-236 2-55 (137)
60 PRK14184 bifunctional 5,10-met 37.9 2.1E+02 0.0045 27.8 8.8 82 164-261 147-233 (286)
61 COG2185 Sbm Methylmalonyl-CoA 36.8 1.2E+02 0.0026 26.3 6.3 67 180-251 10-80 (143)
62 PF13271 DUF4062: Domain of un 36.7 95 0.0021 23.8 5.2 46 201-246 17-65 (83)
63 cd01968 Nitrogenase_NifE_I Nit 36.5 60 0.0013 32.7 5.2 97 182-283 158-257 (410)
64 PRK11914 diacylglycerol kinase 36.5 1.6E+02 0.0035 28.2 7.9 69 196-265 25-98 (306)
65 PRK13059 putative lipid kinase 36.3 2.6E+02 0.0057 26.6 9.4 67 198-265 20-92 (295)
66 COG1703 ArgK Putative periplas 36.3 45 0.00097 32.7 3.9 82 200-284 133-219 (323)
67 PRK13054 lipid kinase; Reviewe 36.2 2.5E+02 0.0054 26.8 9.2 81 184-264 5-93 (300)
68 TIGR02667 moaB_proteo molybden 36.1 1.1E+02 0.0025 26.7 6.2 72 182-253 4-83 (163)
69 cd03129 GAT1_Peptidase_E_like 36.1 1.4E+02 0.003 27.0 7.0 65 181-245 28-92 (210)
70 PF02423 OCD_Mu_crystall: Orni 35.3 72 0.0016 31.0 5.3 69 184-264 155-227 (313)
71 TIGR01501 MthylAspMutase methy 35.2 1.2E+02 0.0027 25.8 6.1 41 200-242 19-60 (134)
72 cd01078 NAD_bind_H4MPT_DH NADP 34.8 1.4E+02 0.0031 26.3 6.9 71 184-261 54-129 (194)
73 PRK13055 putative lipid kinase 34.3 2.8E+02 0.0061 27.0 9.4 68 197-264 20-94 (334)
74 PRK10964 ADP-heptose:LPS hepto 34.2 1.8E+02 0.0039 27.8 7.9 81 182-264 178-282 (322)
75 cd01079 NAD_bind_m-THF_DH NAD 33.8 80 0.0017 28.9 4.9 76 181-260 61-155 (197)
76 CHL00076 chlB photochlorophyll 33.5 1.1E+02 0.0025 31.9 6.7 101 180-283 161-266 (513)
77 TIGR00147 lipid kinase, YegS/R 33.3 3.7E+02 0.008 25.3 9.8 81 184-264 3-92 (293)
78 PRK14167 bifunctional 5,10-met 33.1 2.9E+02 0.0064 26.9 9.0 81 164-260 147-232 (297)
79 TIGR00177 molyb_syn molybdenum 33.1 73 0.0016 27.1 4.4 53 196-248 26-81 (144)
80 PRK14168 bifunctional 5,10-met 32.8 2.9E+02 0.0062 27.0 8.9 71 182-260 161-236 (297)
81 cd03789 GT1_LPS_heptosyltransf 32.5 1.1E+02 0.0023 28.7 5.8 42 221-264 186-227 (279)
82 PRK03094 hypothetical protein; 31.9 72 0.0016 25.0 3.7 21 198-218 9-29 (80)
83 PF03698 UPF0180: Uncharacteri 31.4 53 0.0011 25.7 2.9 43 198-251 9-51 (80)
84 TIGR00507 aroE shikimate 5-deh 31.2 2.1E+02 0.0045 26.9 7.6 51 231-285 176-234 (270)
85 COG1920 Predicted nucleotidylt 31.0 56 0.0012 30.0 3.4 58 224-288 104-163 (210)
86 TIGR01862 N2-ase-Ialpha nitrog 31.0 80 0.0017 32.3 5.0 96 182-282 191-289 (443)
87 PRK14185 bifunctional 5,10-met 30.7 3.7E+02 0.0079 26.2 9.2 70 183-260 158-232 (293)
88 PF10087 DUF2325: Uncharacteri 30.5 1.7E+02 0.0036 23.0 5.9 45 198-242 11-57 (97)
89 PRK13057 putative lipid kinase 30.2 2.7E+02 0.006 26.3 8.3 66 198-264 14-83 (287)
90 cd01976 Nitrogenase_MoFe_alpha 30.0 91 0.002 31.7 5.2 97 182-283 172-271 (421)
91 PF03575 Peptidase_S51: Peptid 29.8 1.2E+02 0.0025 26.0 5.2 36 202-238 5-40 (154)
92 KOG4698 Uncharacterized conser 29.2 13 0.00028 38.3 -1.0 69 221-291 218-288 (475)
93 PRK10431 N-acetylmuramoyl-l-al 28.7 1.2E+02 0.0026 31.2 5.9 67 181-247 189-275 (445)
94 PRK02842 light-independent pro 28.7 86 0.0019 31.9 4.8 94 182-283 166-262 (427)
95 TIGR00640 acid_CoA_mut_C methy 28.6 2E+02 0.0044 24.3 6.3 41 202-244 22-63 (132)
96 PRK12549 shikimate 5-dehydroge 28.5 1.7E+02 0.0036 28.0 6.5 53 229-285 188-247 (284)
97 PLN02204 diacylglycerol kinase 28.2 2.8E+02 0.006 29.8 8.5 90 155-250 139-235 (601)
98 TIGR01284 alt_nitrog_alph nitr 28.2 87 0.0019 32.2 4.7 97 182-283 199-298 (457)
99 TIGR02015 BchY chlorophyllide 27.8 64 0.0014 32.9 3.7 81 198-283 178-260 (422)
100 cd01965 Nitrogenase_MoFe_beta_ 27.8 73 0.0016 32.3 4.1 100 181-283 154-274 (428)
101 cd01977 Nitrogenase_VFe_alpha 27.7 1E+02 0.0023 31.1 5.2 97 182-283 162-261 (415)
102 PRK09424 pntA NAD(P) transhydr 27.6 1.5E+02 0.0033 31.1 6.4 94 193-291 13-119 (509)
103 TIGR00561 pntA NAD(P) transhyd 27.1 2.1E+02 0.0045 30.1 7.3 93 193-289 12-116 (511)
104 PF02737 3HCDH_N: 3-hydroxyacy 26.5 51 0.0011 29.3 2.4 57 201-264 95-153 (180)
105 cd00758 MoCF_BD MoCF_BD: molyb 26.0 1.1E+02 0.0024 25.6 4.2 52 197-248 19-73 (133)
106 smart00115 CASc Caspase, inter 25.6 1E+02 0.0023 28.7 4.4 55 198-254 31-94 (241)
107 PRK09424 pntA NAD(P) transhydr 25.6 2.1E+02 0.0046 30.0 7.0 62 200-261 198-285 (509)
108 PRK07589 ornithine cyclodeamin 25.1 1.5E+02 0.0032 29.5 5.6 66 184-261 156-225 (346)
109 cd03146 GAT1_Peptidase_E Type 25.0 1.6E+02 0.0035 26.7 5.5 62 180-244 29-91 (212)
110 PF02310 B12-binding: B12 bind 24.9 3.5E+02 0.0076 21.4 7.1 55 184-241 2-58 (121)
111 cd07409 MPP_CD73_N CD73 ecto-5 24.6 1.2E+02 0.0026 28.8 4.7 40 201-242 173-215 (281)
112 TIGR02193 heptsyl_trn_I lipopo 24.6 3.4E+02 0.0073 25.8 7.9 80 182-263 179-282 (319)
113 KOG0081 GTPase Rab27, small G 23.8 1.8E+02 0.0039 26.1 5.2 52 180-231 122-176 (219)
114 PF12689 Acid_PPase: Acid Phos 23.6 1.2E+02 0.0026 26.9 4.2 91 186-287 35-127 (169)
115 PRK05568 flavodoxin; Provision 23.6 2E+02 0.0043 23.8 5.4 49 183-238 4-53 (142)
116 PRK00258 aroE shikimate 5-dehy 23.4 3.2E+02 0.007 25.8 7.4 53 229-285 181-241 (278)
117 PF01976 DUF116: Protein of un 23.2 2E+02 0.0043 25.2 5.5 39 199-240 75-113 (158)
118 COG0169 AroE Shikimate 5-dehyd 22.8 2.5E+02 0.0054 27.1 6.5 87 183-284 151-245 (283)
119 cd00032 CASc Caspase, interleu 22.7 1.2E+02 0.0025 28.2 4.2 55 198-254 33-95 (243)
120 PRK09989 hypothetical protein; 22.5 1.9E+02 0.0042 26.7 5.7 49 198-246 16-64 (258)
121 PF01922 SRP19: SRP19 protein; 22.5 1E+02 0.0023 24.6 3.3 41 198-262 30-70 (95)
122 PF00670 AdoHcyase_NAD: S-aden 22.5 1.2E+02 0.0026 26.8 4.0 35 229-263 74-112 (162)
123 PRK15438 erythronate-4-phospha 22.5 1.8E+02 0.0039 29.3 5.7 71 184-260 118-206 (378)
124 TIGR01860 VNFD nitrogenase van 22.3 1E+02 0.0022 31.7 4.0 97 182-283 201-300 (461)
125 TIGR01283 nifE nitrogenase mol 22.3 1.4E+02 0.003 30.6 4.9 96 182-282 197-295 (456)
126 smart00852 MoCF_biosynth Proba 22.2 1.5E+02 0.0033 24.6 4.4 52 197-248 18-72 (135)
127 PRK06823 ornithine cyclodeamin 22.1 1.2E+02 0.0027 29.5 4.3 66 184-261 155-222 (315)
128 TIGR02370 pyl_corrinoid methyl 22.0 3.7E+02 0.008 24.1 7.2 62 180-243 82-144 (197)
129 PF01488 Shikimate_DH: Shikima 21.9 1.1E+02 0.0023 25.7 3.4 70 184-266 38-115 (135)
130 PF04796 RepA_C: Plasmid encod 21.8 53 0.0011 29.1 1.5 62 190-254 20-84 (161)
131 PRK08618 ornithine cyclodeamin 21.6 1.5E+02 0.0032 28.9 4.8 64 184-260 154-220 (325)
132 cd03814 GT1_like_2 This family 21.2 3.8E+02 0.0083 24.7 7.4 60 181-242 196-275 (364)
133 PRK06932 glycerate dehydrogena 20.8 1.5E+02 0.0033 28.8 4.7 59 200-258 160-230 (314)
134 COG0860 AmiC N-acetylmuramoyl- 20.7 1.9E+02 0.0042 26.9 5.2 48 201-248 76-126 (231)
135 PLN02928 oxidoreductase family 20.7 2E+02 0.0043 28.4 5.5 59 200-258 172-259 (347)
136 PF14266 DUF4356: Domain of un 20.5 2.2E+02 0.0048 29.7 6.0 48 179-227 406-454 (488)
137 KOG3349 Predicted glycosyltran 20.4 1.9E+02 0.0042 25.6 4.6 72 207-287 59-131 (170)
138 cd08191 HHD 6-hydroxyhexanoate 20.0 4.4E+02 0.0096 26.2 7.9 59 184-242 24-88 (386)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-69 Score=534.32 Aligned_cols=350 Identities=37% Similarity=0.666 Sum_probs=326.1
Q ss_pred CCCCCceEEEEEeCC-----CCceeeecCCCccc---ccCCCccEEEecCCCCCCCCceeeeeCceEEEEcCCCCCCchh
Q 041159 1 RIANNSLTVYIESSQ-----SQVKRVIRPYPSKL---ALDYVTPVQIVNGDADHLPACHFIHDVPAVVFSTGGFAGNQFH 72 (356)
Q Consensus 1 r~~~~~~~~~~~~~~-----~~~~~~i~py~rk~---~m~~~~e~~~~~~~~~~~~~C~~~~~~Pavv~~~~gy~~N~~H 72 (356)
|+||.++|+++..+. .+.+|+||||+||| +|+.|+|+++.........+|+++|++||++|++|||++|.||
T Consensus 105 r~h~~~~~~~~~~~~~~~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~~~r~c~v~~~~pa~vfs~Gg~tgn~yh 184 (475)
T KOG4698|consen 105 RTHPDSSTVLLTLGRLLTFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGSEIRRCDVNHEVPAIVFSTGGYTGNEYH 184 (475)
T ss_pred ccCcchhhhhhhccchhhhccccchhcccccccccccccccccccceEEcCCcccceeeeecccchheeecCCcchhhHH
Confidence 789999999887763 35899999999999 9999999999955556678999999999999999999999999
Q ss_pred hhhHhHHHHHHHhh--hcCCcceEEEecCCcchhhhHHHHHHhhcCCccccCCCCCCeeeecceEEeecccCCCccCCCC
Q 041159 73 EFNELIIPLFITSR--HFRSQVKFVIIDYKPWWVSKYSNILSLLTRYEVINPAADGNVHCFPAAVIGLKYHGFLSLNSTD 150 (356)
Q Consensus 73 ~~~D~liplf~t~~--~~~~~v~lvi~d~~~~w~~~y~~ll~~ls~~~ii~l~~~~~~~CF~~~ivgl~~~~~l~~dp~~ 150 (356)
+|+|+++|||++.+ .|++++++++++..+||..+|.+++++||+||+++++.+..+|||++++|||..|.++.++|..
T Consensus 185 df~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~ 264 (475)
T KOG4698|consen 185 DFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQ 264 (475)
T ss_pred HHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEEeeeeeeeeeecccccccCCc
Confidence 99999999999999 7899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC--CcHHHHHHHHHHHhCCCcc--Cc-ccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHH
Q 041159 151 IPGG--YSMVDFKRFLREAYSLKIK--NV-SEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLN 225 (356)
Q Consensus 151 ~~~~--~~i~~F~~~l~~~~~l~~~--~~-~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~ 225 (356)
.+++ .++.+|++++..+|+.... .. .+.+.++||+++++|.++|.|+|++||.++++..||+|.++++++ +++.
T Consensus 265 ~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~~~kkpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~ 343 (475)
T KOG4698|consen 265 PPPNGTLSMLDFRNLLDKALSPRIPEANVTAPEPWKKPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVA 343 (475)
T ss_pred CCCccccccccHHHHHHHHhcccccccccCCcChhhCCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchh
Confidence 7765 7999999999999976331 11 233456799999999999999999999999999999999999986 9999
Q ss_pred HHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCC-CcCCCCCchHHHHhhcCCeEEEEEecCCCCcccccCCCCC
Q 041159 226 KFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLG-LEWGSTYYFGVPAREMGVQYLEYKTEPEESTLSETYSRDD 304 (356)
Q Consensus 226 eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~-~~~~~~~~y~~lA~~~gl~Y~~y~~~~~essl~~~~~~~~ 304 (356)
+|+++.+++|||+|+|||||||++|+||++.+|||.|.| .+|.+..+|..+|+.|+++|.+|++.++||+|.++|+.|+
T Consensus 344 ~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~ 423 (475)
T KOG4698|consen 344 KQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDN 423 (475)
T ss_pred hhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCC
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CcccCCCCccchhhHHHH-hhhcCCccEEEehHHHHHHHHHHHHHhhh
Q 041159 305 PIITDPASLFAKDYFAAR-AVYIDAQNLKINLTRFRQTIVQAMEHIRM 351 (356)
Q Consensus 305 ~~~~dP~~~~~~gw~~~~-~~yl~~qnv~vd~~~f~~~L~~a~~~l~~ 351 (356)
+++.||.|..++||..++ .+|+..|+|++|+.||++.+.+|++....
T Consensus 424 ~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~~~ 471 (475)
T KOG4698|consen 424 TIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKEIT 471 (475)
T ss_pred ceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHHHH
Confidence 999999999999999888 89999999999999999999999977654
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.97 E-value=2.8e-30 Score=233.85 Aligned_cols=198 Identities=23% Similarity=0.397 Sum_probs=146.3
Q ss_pred CCchhhhhHhHHHHHHHhhhc--CCcceEEEecCCcchhhhH-HHHHHhhcC-CccccCCCCCCeeeecceEEeecccCC
Q 041159 68 GNQFHEFNELIIPLFITSRHF--RSQVKFVIIDYKPWWVSKY-SNILSLLTR-YEVINPAADGNVHCFPAAVIGLKYHGF 143 (356)
Q Consensus 68 ~N~~H~~~D~liplf~t~~~~--~~~v~lvi~d~~~~w~~~y-~~ll~~ls~-~~ii~l~~~~~~~CF~~~ivgl~~~~~ 143 (356)
+|||||+.|.+ |.+.++++. +.+..+++.+... ..++ .++|+.|+. .+.+.+ ..++..||++++++......
T Consensus 1 ~~~gH~l~d~l-~~l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~lg~~~~~i~~-~~~~~~~~~~l~~~~~~~~~ 76 (206)
T PF04577_consen 1 NNFGHFLIDFL-PRLWYLPQYIPDSDIIILVPDDFD--NPPFIREILELLGIPENRIKI-DSDEPVCFERLIVPSPPYSP 76 (206)
T ss_pred CCCcEEHHHHH-HHHHHHHHHCCCCCeEEEEcCCcc--ccHHHHHHHHHcCCCccEEEE-cCCCeEEECEEEEeCCCccc
Confidence 48899999965 444677654 3444566555211 2233 477776653 223322 23478999999987643211
Q ss_pred CccCCCCCCCCCcHHHHHHHHHHHhCCCccCcccccCCCcEEEEEEc--CCCccccCHHHHHHHHHHcCCEEEEEcCCCC
Q 041159 144 LSLNSTDIPGGYSMVDFKRFLREAYSLKIKNVSEIQREKPVLIFISR--GNSRKFLNEDEMVVMIEELGFQVVVTRPNRM 221 (356)
Q Consensus 144 l~~dp~~~~~~~~i~~F~~~l~~~~~l~~~~~~~~~~~~pr~~~i~R--~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~ 221 (356)
.. ........|++++++.++++. ..+||++|++| ++.|++.||+|+++.+++.||+++. ++ .
T Consensus 77 ~~------~~~~~~~~~~~~~~~~~~~~~-------~~~p~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~~v~--~~-~ 140 (206)
T PF04577_consen 77 SD------FNPSFFPALRDRIRRKLNLPP-------PKRPRILYISRRKSGSRRILNEDELLEILKKYGFEVVD--PE-D 140 (206)
T ss_pred cC------cCchHHHHHHHHHHHHhCCcc-------cCCCeEEEEecCCCCCCcCcCHHHHHHHHhhCCeEEEe--CC-C
Confidence 10 111234488899999987653 14569999999 4569999999999999999988665 55 5
Q ss_pred CCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEEEEE
Q 041159 222 SNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYLEYK 288 (356)
Q Consensus 222 ~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~~y~ 288 (356)
+|+.||++++++||+|||+|||||+|++||+||+.||||+|... ...+|..+|..+|++|..+.
T Consensus 141 ~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~---~~~~~~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 141 LSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY---YNRHYRNLAQALGIHYYAVY 204 (206)
T ss_pred CCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC---CCHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999999999999999988762 23469999999999999775
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.82 E-value=2.2e-19 Score=170.30 Aligned_cols=198 Identities=19% Similarity=0.272 Sum_probs=129.3
Q ss_pred eEEEEcCCCCCCchhhhhHhHHHHHHHhhhcC--CcceEEEecCCcchhhhHHHHHHhhc-CCccccCCCCCCeeeecce
Q 041159 58 AVVFSTGGFAGNQFHEFNELIIPLFITSRHFR--SQVKFVIIDYKPWWVSKYSNILSLLT-RYEVINPAADGNVHCFPAA 134 (356)
Q Consensus 58 avv~~~~gy~~N~~H~~~D~liplf~t~~~~~--~~v~lvi~d~~~~w~~~y~~ll~~ls-~~~ii~l~~~~~~~CF~~~ 134 (356)
..||..+|++.||.|++.|.+ |....++..+ .+-.++.....+ |. .+++..+. +.++|.. ...+|-..+
T Consensus 122 ~~v~~~~~~~~~Yghflle~L-p~l~~i~~l~i~~~~pLl~P~~~~-wq---adll~m~~~~~~ii~~---~p~V~~~~a 193 (368)
T COG4421 122 GAVFKEWGFSFEYGHFLLENL-PYLWQIKSLGILSDPPLLYPRLTE-WQ---ADLLFMAGPDCPIIAT---APAVPLGPA 193 (368)
T ss_pred cceecccccccccchhHHhhh-HHHHHHhhhcccccCcccCCcchH-HH---HhHHhhcCCCCceeec---ccceeeccc
Confidence 346666677899999999954 5544555432 112222222222 21 25655554 5666654 355666655
Q ss_pred EEeecccCCCccCCCCCCCCCcHHHHHH--HHHHHhCCCccCcccccCCCcEEEEEEcCCC--ccccCHHHHHHHHHHcC
Q 041159 135 VIGLKYHGFLSLNSTDIPGGYSMVDFKR--FLREAYSLKIKNVSEIQREKPVLIFISRGNS--RKFLNEDEMVVMIEELG 210 (356)
Q Consensus 135 ivgl~~~~~l~~dp~~~~~~~~i~~F~~--~l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~--R~i~N~~ev~~~l~~~g 210 (356)
+++... ++ .-..++.. ..|..+. ..+...++.+|+||+.. |+++||+|+...+++.|
T Consensus 194 vl~~~~------s~------~~~ha~l~~~~eR~~~~-------~~~~~~adkiYVSR~~qS~R~lvnE~evE~~~q~~G 254 (368)
T COG4421 194 VLPVSG------SP------RYTHALLAWKDERVIAI-------KGKGKVADKIYVSRKAQSMRVLVNEEEVERLLQRSG 254 (368)
T ss_pred ccCCCC------Cc------hhhhHHHHHHhhhhhcc-------cCCCCCcceEEEechhhHHHHhhCHHHHHHHHHhcC
Confidence 543221 11 11112221 1223322 22456678999999654 99999999999999999
Q ss_pred CEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCCCcCCCCCch-HHHHhhcCCeEEEE
Q 041159 211 FQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWGSTYYF-GVPAREMGVQYLEY 287 (356)
Q Consensus 211 f~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~~~~~~~~~y-~~lA~~~gl~Y~~y 287 (356)
|.++..| +++..||+++|+.|.||||+||+||.|.+|+++|+.||||-|-..+ .+..+ ++++.+-|..|..|
T Consensus 255 ~~IVrPE---tl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~~--~~s~~vr~~~~~~g~~~~~~ 327 (368)
T COG4421 255 LTIVRPE---TLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTTN--FRSFWVRMANYMSGDYYPGY 327 (368)
T ss_pred cEEEech---hcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCCc--chHHHHHHhhhcccceeecc
Confidence 9998754 5899999999999999999999999999999999999999995432 23444 44445555555544
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.09 E-value=1.2 Score=38.38 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=57.2
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA 243 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA 243 (356)
+.+.|+++. ..-+++++.|+. ..-..+..+|.+.|..|..++-. +.++.| .+++|||+|..-|.
T Consensus 18 ll~~~~~~~--------~gk~v~VvGrs~----~vG~pla~lL~~~gatV~~~~~~-t~~l~~---~v~~ADIVvsAtg~ 81 (140)
T cd05212 18 LLNKEGVRL--------DGKKVLVVGRSG----IVGAPLQCLLQRDGATVYSCDWK-TIQLQS---KVHDADVVVVGSPK 81 (140)
T ss_pred HHHHcCCCC--------CCCEEEEECCCc----hHHHHHHHHHHHCCCEEEEeCCC-CcCHHH---HHhhCCEEEEecCC
Confidence 445677653 334889998765 44556777888889999988643 334544 58999999999887
Q ss_pred h-hhhhcccCCCcEEEE
Q 041159 244 G-LTTELFLPAGAVMVQ 259 (356)
Q Consensus 244 g-Ltn~lF~~pgs~viE 259 (356)
. +-..=|++||+.|+-
T Consensus 82 ~~~i~~~~ikpGa~Vid 98 (140)
T cd05212 82 PEKVPTEWIKPGATVIN 98 (140)
T ss_pred CCccCHHHcCCCCEEEE
Confidence 6 234458999999993
No 5
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.16 E-value=7.5 Score=37.50 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
.-+++++.|... --.-+..+|...|..|.+.... + ....+.+.+||++|+.=| +++-..=+.+||++||.+
T Consensus 152 Gk~V~ViGrs~~----vGrpla~lL~~~~atVtv~hs~-t---~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDV 223 (279)
T PRK14178 152 GKRAVVVGRSID----VGRPMAALLLNADATVTICHSK-T---ENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDV 223 (279)
T ss_pred CCEEEEECCCcc----ccHHHHHHHHhCCCeeEEEecC-h---hHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEe
Confidence 348999998764 2234666777789998886532 2 234456789999999999 777777778999999987
Q ss_pred ec
Q 041159 261 VP 262 (356)
Q Consensus 261 ~P 262 (356)
--
T Consensus 224 gi 225 (279)
T PRK14178 224 GI 225 (279)
T ss_pred ec
Confidence 53
No 6
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=82.00 E-value=16 Score=32.23 Aligned_cols=70 Identities=20% Similarity=0.407 Sum_probs=45.6
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|... =-.-+..+|.+.|..|...... +..+.+ ...+|||+|+.-| +++-..=|.+||++||-+
T Consensus 37 k~v~VvGrs~~----VG~Pla~lL~~~~atVt~~h~~-T~~l~~---~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDv 107 (160)
T PF02882_consen 37 KKVVVVGRSNI----VGKPLAMLLLNKGATVTICHSK-TKNLQE---ITRRADIVVSAVGKPNLIKADWIKPGAVVIDV 107 (160)
T ss_dssp -EEEEE-TTTT----THHHHHHHHHHTT-EEEEE-TT-SSSHHH---HHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE-
T ss_pred CEEEEECCcCC----CChHHHHHHHhCCCeEEeccCC-CCcccc---eeeeccEEeeeeccccccccccccCCcEEEec
Confidence 38999998763 2234677788889999887543 334554 4689999999888 567777789999999965
No 7
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=77.11 E-value=3.2 Score=42.20 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=68.1
Q ss_pred CCcEEEEEEcCC---CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee---hhhhhhhcccCCC
Q 041159 181 EKPVLIFISRGN---SRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH---GAGLTTELFLPAG 254 (356)
Q Consensus 181 ~~pr~~~i~R~~---~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H---GAgLtn~lF~~pg 254 (356)
.++++-+|.... .-..-|.+|+.++|+++|.++..+-+. ..++ |+++-+.+|..-|.++ |-..+..|.-+=|
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~-~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGP-ESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECC-CCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 345676776432 112257899999999999999766443 2565 7778888888555444 5556777766667
Q ss_pred cEEEEE--ecCCCcCCCCCchHHHHhhcCCe
Q 041159 255 AVMVQV--VPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 255 s~viEi--~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.-.+.. +|.|++ ....++..+++.+|+.
T Consensus 232 iP~i~~~~~P~G~~-~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 232 QPYIHSPTLPIGAK-ATAEFLRQVAKFAGIE 261 (427)
T ss_pred CceEecCCCccCHH-HHHHHHHHHHHHhCCC
Confidence 767766 688854 2345788999988864
No 8
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.93 E-value=26 Score=34.24 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=51.4
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. =-.-+...|.+.|+.|.+..-. +.+++ +..++|||+|.+=| +++....|++||++||.+
T Consensus 159 Gk~V~vIG~s~i----vG~PmA~~L~~~gatVtv~~~~-t~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDv 230 (301)
T PRK14194 159 GKHAVVIGRSNI----VGKPMAALLLQAHCSVTVVHSR-STDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVVIDV 230 (301)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhcccHhhccCCcEEEEe
Confidence 348999998753 1123566777789999988533 23444 45788999988776 456677889999999986
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 231 g 231 (301)
T PRK14194 231 G 231 (301)
T ss_pred c
Confidence 3
No 9
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.37 E-value=25 Score=33.97 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=55.2
Q ss_pred HHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-h
Q 041159 165 REAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-A 243 (356)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-A 243 (356)
.+.|+++. ..-++++|.|.+. + -.-+...|.+.|..|.+... .+-++ .+..++|||+|.+-| +
T Consensus 149 L~~~~i~l--------~Gk~v~vIG~S~i---v-G~Pla~lL~~~gatVtv~~s-~t~~l---~~~~~~ADIVI~avg~~ 212 (284)
T PRK14179 149 FREYNVEL--------EGKHAVVIGRSNI---V-GKPMAQLLLDKNATVTLTHS-RTRNL---AEVARKADILVVAIGRG 212 (284)
T ss_pred HHHhCCCC--------CCCEEEEECCCCc---C-cHHHHHHHHHCCCEEEEECC-CCCCH---HHHHhhCCEEEEecCcc
Confidence 35566653 2348999998763 1 12355667778999988732 22333 346789999998877 5
Q ss_pred hhhhhcccCCCcEEEEE
Q 041159 244 GLTTELFLPAGAVMVQV 260 (356)
Q Consensus 244 gLtn~lF~~pgs~viEi 260 (356)
++....|.+||++||.+
T Consensus 213 ~~v~~~~ik~GavVIDv 229 (284)
T PRK14179 213 HFVTKEFVKEGAVVIDV 229 (284)
T ss_pred ccCCHHHccCCcEEEEe
Confidence 67777889999999986
No 10
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.81 E-value=30 Score=33.66 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. --.-+...|.+.|+.|.+.... +.++. +..++|||+|.+-| +.+....|++||++||.+
T Consensus 158 Gk~V~viGrs~~----mG~PmA~~L~~~g~tVtv~~~r-T~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDv 229 (296)
T PRK14188 158 GLNAVVIGRSNL----VGKPMAQLLLAANATVTIAHSR-TRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATVIDV 229 (296)
T ss_pred CCEEEEEcCCcc----hHHHHHHHHHhCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhhcchheecCCCEEEEc
Confidence 348899998764 2234666777789999988422 23443 45679999888776 457777889999999975
No 11
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=70.65 E-value=12 Score=37.20 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCCcEEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe---ehhhhhhhcccCCCc
Q 041159 180 REKPVLIFISRGNS-RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGA---HGAGLTTELFLPAGA 255 (356)
Q Consensus 180 ~~~pr~~~i~R~~~-R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~---HGAgLtn~lF~~pgs 255 (356)
..++.+-+|.-... . -|.+|+.++|++.|.+|..+-+. ..+++| ++-+.+|++.|.+ +|..++..+=-+-|.
T Consensus 150 ~~~~~vNlig~~~~~~--~d~~el~~ll~~~G~~v~~~~~~-~~s~~~-i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 150 TEPGSVNLIGGYNLGG--GDLRELKRLLEEMGIRVNALFDG-GTTVEE-LRELGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred CCCCcEEEECCCCCch--hhHHHHHHHHHHcCCcEEEEcCC-CCCHHH-HHhhccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 34556777764432 2 58899999999999999876443 255554 5667788877766 577777777656677
Q ss_pred EEEEEecCCCcCCCCCchHHHHhhcCC
Q 041159 256 VMVQVVPLGLEWGSTYYFGVPAREMGV 282 (356)
Q Consensus 256 ~viEi~P~~~~~~~~~~y~~lA~~~gl 282 (356)
-.+...|.|++. ...++..+|+.+|+
T Consensus 226 p~~~~~p~G~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 226 PYILINPIGLEA-TDAFLRKLAELFGI 251 (399)
T ss_pred CeEEeCCcCHHH-HHHHHHHHHHHhCC
Confidence 777777998542 34588999999996
No 12
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=70.27 E-value=9.9 Score=33.73 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=50.3
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhh-hhhcccCCCcEEEE
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGL-TTELFLPAGAVMVQ 259 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgL-tn~lF~~pgs~viE 259 (356)
...++++|..... =..-+.+.|++.|.+|.+.. -+..+..+.+++||++|+..|+.- -..=.+++|..+|.
T Consensus 43 ~gk~vlViG~G~~----~G~~~a~~L~~~g~~V~v~~----r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viID 114 (168)
T cd01080 43 AGKKVVVVGRSNI----VGKPLAALLLNRNATVTVCH----SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVID 114 (168)
T ss_pred CCCEEEEECCcHH----HHHHHHHHHhhCCCEEEEEE----CCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEE
Confidence 3458888887531 01125677888898877764 245677789999999999999952 11112477888888
Q ss_pred Ee
Q 041159 260 VV 261 (356)
Q Consensus 260 i~ 261 (356)
+-
T Consensus 115 la 116 (168)
T cd01080 115 VG 116 (168)
T ss_pred cc
Confidence 86
No 13
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=64.67 E-value=17 Score=31.52 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHcCCEEEEEcCCC-CCCHHHHHHHH--hcCCEEEEeehhhhhhh
Q 041159 202 MVVMIEELGFQVVVTRPNR-MSNLNKFTEVV--NSCSVLVGAHGAGLTTE 248 (356)
Q Consensus 202 v~~~l~~~gf~v~~~~~~~-~~~~~eq~~~~--~~advlvg~HGAgLtn~ 248 (356)
|.+.|++.|++|......+ ..++.+.++.. .++|++|+.|-.+..+.
T Consensus 33 l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~~ 82 (175)
T PF01520_consen 33 LKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNGG 82 (175)
T ss_dssp HHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSST
T ss_pred HHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccCC
Confidence 4456667899988765542 46899999998 79999999997765443
No 14
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=64.06 E-value=27 Score=34.91 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee---hhhhhhhcccCCCcEE
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH---GAGLTTELFLPAGAVM 257 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H---GAgLtn~lF~~pgs~v 257 (356)
.+..+-+|.-.. ..-|..|+.+.|++.|.++...-+. ..+++|. +-+.+|.+-|.+. |-.++..|--+-|.-.
T Consensus 159 ~~~~VNiig~~~--~~~d~~el~~lL~~~Gi~~~~~~~~-~~~~~~i-~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~ 234 (406)
T cd01967 159 TPYDVNIIGEYN--IGGDAWVIKPLLEELGIRVNATFTG-DGTVDEL-RRAHRAKLNLVHCSRSMNYLAREMEERYGIPY 234 (406)
T ss_pred CCCeEEEEeccc--cchhHHHHHHHHHHcCCEEEEEeCC-CCCHHHH-hhCccCCEEEEEChHHHHHHHHHHHHhhCCCE
Confidence 345677776432 2338899999999999999875443 3666655 5588888666553 5455555554556666
Q ss_pred EEEecCCCcCCCCCchHHHHhhcCC
Q 041159 258 VQVVPLGLEWGSTYYFGVPAREMGV 282 (356)
Q Consensus 258 iEi~P~~~~~~~~~~y~~lA~~~gl 282 (356)
+...|.|++ ....++..+++.+|.
T Consensus 235 ~~~~p~G~~-~t~~~l~~l~~~lg~ 258 (406)
T cd01967 235 MEVNFYGFE-DTSESLRKIAKFFGD 258 (406)
T ss_pred EEecCCcHH-HHHHHHHHHHHHhCC
Confidence 777788854 234578999999887
No 15
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.79 E-value=23 Score=34.39 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=50.4
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCC--ccccCHHHHHHHHHH----cCCEEEEEcCCCCCCHHHHHHHHhcCCEE
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNS--RKFLNEDEMVVMIEE----LGFQVVVTRPNRMSNLNKFTEVVNSCSVL 237 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~--R~i~N~~ev~~~l~~----~gf~v~~~~~~~~~~~~eq~~~~~~advl 237 (356)
+.+.|+++. ..-++++|.|.+. |= +..+|.+ .|..|.++... +.. ..+.+++|||+
T Consensus 149 ll~~y~i~l--------~Gk~vvViGrS~iVG~P------la~lL~~~~~~~~atVt~~hs~-t~~---l~~~~~~ADIv 210 (295)
T PRK14174 149 LLGRYNIET--------KGKHCVVVGRSNIVGKP------MANLMLQKLKESNCTVTICHSA-TKD---IPSYTRQADIL 210 (295)
T ss_pred HHHHhCCCC--------CCCEEEEECCCCcchHH------HHHHHHhccccCCCEEEEEeCC-chh---HHHHHHhCCEE
Confidence 345666543 2348999999874 32 3333333 57888876543 223 34558999999
Q ss_pred EEeehhh-hhhhcccCCCcEEEEEe
Q 041159 238 VGAHGAG-LTTELFLPAGAVMVQVV 261 (356)
Q Consensus 238 vg~HGAg-Ltn~lF~~pgs~viEi~ 261 (356)
|+.-|.. +-..=|.+||++||-+-
T Consensus 211 I~Avg~~~li~~~~vk~GavVIDVg 235 (295)
T PRK14174 211 IAAIGKARFITADMVKPGAVVIDVG 235 (295)
T ss_pred EEecCccCccCHHHcCCCCEEEEee
Confidence 9988765 22222468999999763
No 16
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=63.36 E-value=18 Score=30.15 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcccC-CCcEEEEEecCCCcCCCCCchHHHHh
Q 041159 200 DEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFLP-AGAVMVQVVPLGLEWGSTYYFGVPAR 278 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~-pgs~viEi~P~~~~~~~~~~y~~lA~ 278 (356)
++.++.|++ |+++...+ ..+-+|-.+.+.++|++|+-.+..++--++-. |+-.+|...--|++.. . -..|+
T Consensus 9 ~~~~~~l~~-~~~v~~~~---~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i---d-~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD---SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNI---D-LEAAK 80 (133)
T ss_dssp HHHHHHHHH-TSEEEEES---SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-----HHHHH
T ss_pred HHHHHHHHC-CceEEEeC---CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcc---c-HHHHh
Confidence 566788888 88888876 37888889999999999997777676666633 8999998887775422 1 35567
Q ss_pred hcCCeEE
Q 041159 279 EMGVQYL 285 (356)
Q Consensus 279 ~~gl~Y~ 285 (356)
..|+...
T Consensus 81 ~~gI~V~ 87 (133)
T PF00389_consen 81 ERGIPVT 87 (133)
T ss_dssp HTTSEEE
T ss_pred hCeEEEE
Confidence 7888765
No 17
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=63.11 E-value=23 Score=30.77 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=35.7
Q ss_pred HHHHHHHcCCEEEEEcCCC-CCCHHHHHHHHhc--CCEEEEeehhhhhh
Q 041159 202 MVVMIEELGFQVVVTRPNR-MSNLNKFTEVVNS--CSVLVGAHGAGLTT 247 (356)
Q Consensus 202 v~~~l~~~gf~v~~~~~~~-~~~~~eq~~~~~~--advlvg~HGAgLtn 247 (356)
+.+.|++.|++|+....+. ..++.+.+...+. +|++|+.|-.+-.+
T Consensus 34 l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 34 LAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 4456666799998765542 3689999999885 99999999887766
No 18
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=62.16 E-value=38 Score=32.58 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCEEEEeehhhhhhh-c--ccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEEE
Q 041159 224 LNKFTEVVNSCSVLVGAHGAGLTTE-L--FLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYLE 286 (356)
Q Consensus 224 ~~eq~~~~~~advlvg~HGAgLtn~-l--F~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~~ 286 (356)
+.+.-+.+.++|++|-.-..++.+. + .|++++.+|.+.-.. ..+.| ..|+..|++..-
T Consensus 200 ~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P----g~tdf-~~Ak~~G~~a~~ 260 (287)
T TIGR02853 200 LNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP----GGTDF-EYAKKRGIKALL 260 (287)
T ss_pred HHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC----CCCCH-HHHHHCCCEEEE
Confidence 4444567789999998766665332 2 478999999887432 23567 789999998873
No 19
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.70 E-value=43 Score=32.43 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh-hhhhhcccCCCcEEEEEe
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA-GLTTELFLPAGAVMVQVV 261 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA-gLtn~lF~~pgs~viEi~ 261 (356)
-++++|.|.+. + -.-+..+|.+.|..|.++... + .+..+...+||++|+.-|. ++-..=|.+||++||.+-
T Consensus 158 k~vvVvGrs~~---V-G~Pla~lL~~~gAtVtv~hs~---t-~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvG 229 (285)
T PRK14191 158 KDVVIIGASNI---V-GKPLAMLMLNAGASVSVCHIL---T-KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIG 229 (285)
T ss_pred CEEEEECCCch---h-HHHHHHHHHHCCCEEEEEeCC---c-HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEee
Confidence 48999998863 1 112455666779999887431 1 2334678999999988774 454555679999999874
No 20
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=61.48 E-value=69 Score=27.25 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=53.7
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEcCC-CCCCHHH-H------------HHHHhcCCEEEEeehhhhhhhcccCCCcEEEE
Q 041159 194 RKFLNEDEMVVMIEELGFQVVVTRPN-RMSNLNK-F------------TEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQ 259 (356)
Q Consensus 194 R~i~N~~ev~~~l~~~gf~v~~~~~~-~~~~~~e-q------------~~~~~~advlvg~HGAgLtn~lF~~pgs~viE 259 (356)
||+.=..+.++.|.+.|++|.+-... ....|.+ + -+++.+||||+++..-...-.-.|++|.++|-
T Consensus 11 ~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li~ 90 (136)
T PF05222_consen 11 RRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLIG 90 (136)
T ss_dssp --BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEEE
T ss_pred cEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEEE
Confidence 55555556777777779999874432 1122321 1 15788999999999999889999999999998
Q ss_pred EecCCCcCCCCCchHHHHhhcCCeEEEEEe
Q 041159 260 VVPLGLEWGSTYYFGVPAREMGVQYLEYKT 289 (356)
Q Consensus 260 i~P~~~~~~~~~~y~~lA~~~gl~Y~~y~~ 289 (356)
++.+.. .......+ ...|+..++|..
T Consensus 91 ~~~~~~---~~~~~~~l-~~~~it~~a~E~ 116 (136)
T PF05222_consen 91 FLHPAQ---NKELLEAL-AKKGITAFALEL 116 (136)
T ss_dssp E--GGG---HHHHHHHH-HHCTEEEEEGGG
T ss_pred eecccc---CHHHHHHH-HHCCCEEEEhhh
Confidence 775431 11223333 346777777643
No 21
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.78 E-value=68 Score=31.05 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=55.5
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA 243 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA 243 (356)
+.+.|+++. ..-++++|.|.+. =-.-+..+|.+.|..|..+... +.++ -..+.+||++|..-|.
T Consensus 148 lL~~~~i~l--------~Gk~vvViGrs~i----VGkPla~lL~~~~atVt~~hs~-t~~l---~~~~~~ADIVV~avG~ 211 (285)
T PRK14189 148 MLESIGIPL--------RGAHAVVIGRSNI----VGKPMAMLLLQAGATVTICHSK-TRDL---AAHTRQADIVVAAVGK 211 (285)
T ss_pred HHHHcCCCC--------CCCEEEEECCCCc----cHHHHHHHHHHCCCEEEEecCC-CCCH---HHHhhhCCEEEEcCCC
Confidence 345566653 3348899998764 2234667778889999876432 2233 3568899999988773
Q ss_pred -hhhhhcccCCCcEEEEE
Q 041159 244 -GLTTELFLPAGAVMVQV 260 (356)
Q Consensus 244 -gLtn~lF~~pgs~viEi 260 (356)
++-+.=|++||++||-+
T Consensus 212 ~~~i~~~~ik~gavVIDV 229 (285)
T PRK14189 212 RNVLTADMVKPGATVIDV 229 (285)
T ss_pred cCccCHHHcCCCCEEEEc
Confidence 55566678999999875
No 22
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=58.52 E-value=52 Score=31.86 Aligned_cols=72 Identities=15% Similarity=0.328 Sum_probs=53.8
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEE
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQ 259 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viE 259 (356)
..-++++|.|++. +- .=+..+|...+..|.++.-. + ++-.+..++|||+|..-| +++-..=|.+||++||-
T Consensus 155 ~Gk~~vVVGrS~i---VG-kPla~lL~~~naTVtvcHs~---T-~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVID 226 (283)
T COG0190 155 RGKNVVVVGRSNI---VG-KPLALLLLNANATVTVCHSR---T-KDLASITKNADIVVVAVGKPHFIKADMVKPGAVVID 226 (283)
T ss_pred CCCEEEEECCCCc---Cc-HHHHHHHHhCCCEEEEEcCC---C-CCHHHHhhhCCEEEEecCCccccccccccCCCEEEe
Confidence 3448899999874 11 13566777789999887532 2 556678999999998888 56777888999999997
Q ss_pred E
Q 041159 260 V 260 (356)
Q Consensus 260 i 260 (356)
+
T Consensus 227 V 227 (283)
T COG0190 227 V 227 (283)
T ss_pred c
Confidence 5
No 23
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=58.28 E-value=28 Score=31.15 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=31.4
Q ss_pred HHHHHHHcCCEEEEEcCCC-C--------------CCHHHHHHHHh--cCCEEEEeehhhhhh
Q 041159 202 MVVMIEELGFQVVVTRPNR-M--------------SNLNKFTEVVN--SCSVLVGAHGAGLTT 247 (356)
Q Consensus 202 v~~~l~~~gf~v~~~~~~~-~--------------~~~~eq~~~~~--~advlvg~HGAgLtn 247 (356)
|.+.|++.|++|+....++ . .++.|.+++.+ +||++|+.|--+..+
T Consensus 35 l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 35 LKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 4455566688776554432 1 26788887776 589999999887654
No 24
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=57.53 E-value=43 Score=32.29 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHhcCCEEEEeehhhh-hhhc--ccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEEEEE
Q 041159 226 KFTEVVNSCSVLVGAHGAGL-TTEL--FLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYLEYK 288 (356)
Q Consensus 226 eq~~~~~~advlvg~HGAgL-tn~l--F~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~~y~ 288 (356)
+-.+.+.++|++|..-++.+ +..+ .|+||+++|.+.-.. ....| ..|+..|++...+.
T Consensus 203 ~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~p----ggtd~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 203 ELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKP----GGTDF-EYAEKRGIKALLAP 263 (296)
T ss_pred HHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCC----CCcCe-eehhhCCeEEEEEC
Confidence 34466789999997655553 3333 389999999987332 12345 56788888887553
No 25
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=56.94 E-value=21 Score=33.48 Aligned_cols=48 Identities=10% Similarity=0.387 Sum_probs=41.3
Q ss_pred EEEEEEcCC------CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcC
Q 041159 184 VLIFISRGN------SRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSC 234 (356)
Q Consensus 184 r~~~i~R~~------~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~a 234 (356)
-+.|++|++ +..|.|.+.+.+..+.+|++|+.++. .+++|.++.+.++
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG---~d~~~i~~a~~~~ 226 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDG---HDIEEIVEALEKA 226 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcC---cCHHHHHHHHHhh
Confidence 578999987 38999999999999999999999874 6788888887766
No 26
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=56.70 E-value=66 Score=32.04 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. +. .-+..+|.+.|..|.++... +.+ +-+..++|||+|..-| +++-..=|.+||++||-+
T Consensus 214 GK~vvVIGRS~i---VG-kPla~LL~~~~ATVTicHs~-T~n---l~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDV 285 (345)
T PLN02897 214 GKNAVVIGRSNI---VG-LPMSLLLQRHDATVSTVHAF-TKD---PEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDV 285 (345)
T ss_pred CCEEEEECCCcc---cc-HHHHHHHHHCCCEEEEEcCC-CCC---HHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEc
Confidence 348899998874 11 13455677778888877532 333 3456899999998776 567777789999999975
No 27
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=55.95 E-value=19 Score=36.59 Aligned_cols=99 Identities=19% Similarity=0.255 Sum_probs=66.5
Q ss_pred CCcEEEEEEcCCC--cc-ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hh--hhhhcccCCC
Q 041159 181 EKPVLIFISRGNS--RK-FLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AG--LTTELFLPAG 254 (356)
Q Consensus 181 ~~pr~~~i~R~~~--R~-i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-Ag--Ltn~lF~~pg 254 (356)
.++.+-+|.-... +. --|..|+.+.|++.|.+|+.+-+. ..+++|. +-+.+|..-|.++. +| ++..|-=+=|
T Consensus 160 ~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~-~~~~~ei-~~~~~A~lniv~~~~~g~~~a~~Lee~~G 237 (426)
T cd01972 160 QEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAG-GCSVEEL-ERASEAAANVTLCLDLGYYLGAALEQRFG 237 (426)
T ss_pred CCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCC-CCCHHHH-HhcccCCEEEEEChhHHHHHHHHHHHHhC
Confidence 3456777765432 11 367789999999999999876444 3566554 66888888887763 33 4444444456
Q ss_pred cEEEEE-ecCCCcCCCCCchHHHHhhcCC
Q 041159 255 AVMVQV-VPLGLEWGSTYYFGVPAREMGV 282 (356)
Q Consensus 255 s~viEi-~P~~~~~~~~~~y~~lA~~~gl 282 (356)
.-.++. +|.|++ ....++..+|+.+|+
T Consensus 238 iP~~~~~~P~G~~-~T~~~l~~ia~~~g~ 265 (426)
T cd01972 238 VPEIKAPQPYGIE-ATDKWLREIAKVLGM 265 (426)
T ss_pred CCeEecCCccCHH-HHHHHHHHHHHHhCC
Confidence 767776 688853 234578899988886
No 28
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.06 E-value=86 Score=30.34 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh-hhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA-GLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA-gLtn~lF~~pgs~viEi 260 (356)
.-++++|.|... =-.-+..+|.+.|..|.++... +. +.-+..++|||+|+.-|. ++-..=|.+||++||-+
T Consensus 158 Gk~vvViGrS~i----VG~Pla~lL~~~~atVt~chs~-t~---~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDv 229 (284)
T PRK14190 158 GKHVVVVGRSNI----VGKPVGQLLLNENATVTYCHSK-TK---NLAELTKQADILIVAVGKPKLITADMVKEGAVVIDV 229 (284)
T ss_pred CCEEEEECCCCc----cHHHHHHHHHHCCCEEEEEeCC-ch---hHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEe
Confidence 348999998874 1123556677778899887532 22 233568999999987774 55566677999999986
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 230 G 230 (284)
T PRK14190 230 G 230 (284)
T ss_pred e
Confidence 4
No 29
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=54.04 E-value=31 Score=33.42 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=38.2
Q ss_pred HHHHHHcCCEEEEEcCC-CCCCHHHHHHHHh--cCCEEEEeehhhhhhhcccCCCcEEEEEec
Q 041159 203 VVMIEELGFQVVVTRPN-RMSNLNKFTEVVN--SCSVLVGAHGAGLTTELFLPAGAVMVQVVP 262 (356)
Q Consensus 203 ~~~l~~~gf~v~~~~~~-~~~~~~eq~~~~~--~advlvg~HGAgLtn~lF~~pgs~viEi~P 262 (356)
.+.|++.|++|+....+ ...++.+-.++.+ +||++|++|-.+.++ |.+.=+|++-
T Consensus 92 ~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~ 149 (287)
T PRK10319 92 RSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFA 149 (287)
T ss_pred HHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEE
Confidence 34555679999876543 3478999988887 899999999755432 3344455553
No 30
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=53.01 E-value=14 Score=37.34 Aligned_cols=95 Identities=16% Similarity=0.268 Sum_probs=64.3
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH-hcCCEEEEeehhhhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV-NSCSVLVGAHGAGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~-~~advlvg~HGAgLtn~lF~~pgs~viEi 260 (356)
++++.+|..-. -.+.+|+.+.|+++|.+++.+-++ .+++|..++- +.+.++++..+...+..|= ..|.-.+..
T Consensus 159 ~~~vniiG~~~---~~d~~ei~~lL~~~Gl~~~~~l~~--~~~~el~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~~~ 232 (416)
T cd01980 159 EPSLALLGEMF---PADPVAIGSVLERMGLAAVPVVPT--REWRELYAAGDAAAVAALHPFYTATIRELE-EAGRPIVSG 232 (416)
T ss_pred CCeEEEEccCC---CCCHHHHHHHHHHcCCceeeEeCC--CCHHHHhhcccCcEEEEeChhHHHHHHHHH-HcCCceecC
Confidence 45788885321 336679999999999999864343 5666654444 3444556666666666664 447767777
Q ss_pred ecCCCcCCCCCchHHHHhhcCCe
Q 041159 261 VPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 261 ~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.|.|++ ....++..+|...|..
T Consensus 233 ~piG~~-~td~~l~~la~~~g~~ 254 (416)
T cd01980 233 APVGAD-GTAAWLEAVGEALGLD 254 (416)
T ss_pred CCcCch-HHHHHHHHHHHHhCcC
Confidence 899965 3456899999999964
No 31
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.63 E-value=1.1e+02 Score=29.75 Aligned_cols=81 Identities=15% Similarity=0.295 Sum_probs=55.0
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG- 242 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG- 242 (356)
|.+.|+++.. .-++++|.|.+. --.-+..+|.+.|..|.++... +.++ .+...+|||+|+.-|
T Consensus 149 lL~~y~i~l~--------GK~vvViGrS~i----VGkPla~lL~~~~ATVtichs~-T~~L---~~~~~~ADIvV~AvGk 212 (288)
T PRK14171 149 VIKKYEPNLT--------GKNVVIIGRSNI----VGKPLSALLLKENCSVTICHSK-THNL---SSITSKADIVVAAIGS 212 (288)
T ss_pred HHHHhCCCCC--------CCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEccCC
Confidence 3456776532 237899998763 2224566777778888877532 3344 346789999998877
Q ss_pred hhhhhhcccCCCcEEEEE
Q 041159 243 AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 243 AgLtn~lF~~pgs~viEi 260 (356)
+++-..=|.+||++||-+
T Consensus 213 p~~i~~~~vk~GavVIDv 230 (288)
T PRK14171 213 PLKLTAEYFNPESIVIDV 230 (288)
T ss_pred CCccCHHHcCCCCEEEEe
Confidence 455566678999999975
No 32
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.13 E-value=1.2e+02 Score=29.50 Aligned_cols=81 Identities=20% Similarity=0.415 Sum_probs=55.6
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG- 242 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG- 242 (356)
|.+.|+++. ..-++++|.|.+. =-.-+..+|.+.|..|.++... +-++ -+...+|||+|+.-|
T Consensus 149 ll~~y~i~l--------~Gk~vvViGrS~i----VGkPla~lL~~~~atVt~chs~-T~~l---~~~~~~ADIvIsAvGk 212 (284)
T PRK14177 149 LLKEYGIDV--------TGKNAVVVGRSPI----LGKPMAMLLTEMNATVTLCHSK-TQNL---PSIVRQADIIVGAVGK 212 (284)
T ss_pred HHHHhCCCC--------CCCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEeCCC
Confidence 345566653 2338899998764 2224566777788999887542 3333 356899999998777
Q ss_pred hhhhhhcccCCCcEEEEE
Q 041159 243 AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 243 AgLtn~lF~~pgs~viEi 260 (356)
+++-..=|.+||++||-+
T Consensus 213 ~~~i~~~~ik~gavVIDv 230 (284)
T PRK14177 213 PEFIKADWISEGAVLLDA 230 (284)
T ss_pred cCccCHHHcCCCCEEEEe
Confidence 456666678999999975
No 33
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.76 E-value=1.1e+02 Score=29.60 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=55.1
Q ss_pred HHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-h
Q 041159 165 REAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-A 243 (356)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-A 243 (356)
.+.|+++. ..-++++|.|.+. =-.-+..+|.+.|..|.++... +-+ .-+...+|||+|+.-| +
T Consensus 148 L~~~~i~l--------~Gk~vvVvGrS~i----VGkPla~lL~~~~atVtichs~-T~~---l~~~~~~ADIvI~AvG~~ 211 (284)
T PRK14170 148 IKSTGTQI--------EGKRAVVIGRSNI----VGKPVAQLLLNENATVTIAHSR-TKD---LPQVAKEADILVVATGLA 211 (284)
T ss_pred HHHhCCCC--------CCCEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCC---HHHHHhhCCEEEEecCCc
Confidence 35667653 2338999998874 1113556666778889887542 333 3355899999998887 5
Q ss_pred hhhhhcccCCCcEEEEE
Q 041159 244 GLTTELFLPAGAVMVQV 260 (356)
Q Consensus 244 gLtn~lF~~pgs~viEi 260 (356)
++-..=|.+||++||-+
T Consensus 212 ~~i~~~~vk~GavVIDv 228 (284)
T PRK14170 212 KFVKKDYIKPGAIVIDV 228 (284)
T ss_pred CccCHHHcCCCCEEEEc
Confidence 66677778999999975
No 34
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=50.90 E-value=26 Score=35.54 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=69.3
Q ss_pred CcEEEEEEcCC--CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee---hhhhhhhcccCCCcE
Q 041159 182 KPVLIFISRGN--SRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH---GAGLTTELFLPAGAV 256 (356)
Q Consensus 182 ~pr~~~i~R~~--~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H---GAgLtn~lF~~pgs~ 256 (356)
++++-+|.-.. ....-|..|+.+.|++.|.+++.+-+. ..+++ +++-+.+|++-|..+ |..++..+--+-|.-
T Consensus 162 ~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~~~~-~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP 239 (430)
T cd01981 162 KPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPE-GASVD-DLNELPKAWFNIVPYREYGLSAALYLEEEFGMP 239 (430)
T ss_pred CCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcC-CCCHH-HHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCC
Confidence 45677775432 244578889999999999999775444 24554 556677787766654 556777776666776
Q ss_pred EEEEecCCCcCCCCCchHHHHhhcCCe
Q 041159 257 MVQVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 257 viEi~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.+...|.|++- ...+...+++.+|+.
T Consensus 240 ~~~~~p~G~~~-t~~~l~~i~~~~g~~ 265 (430)
T cd01981 240 SVKITPIGVVA-TARFLREIQELLGIQ 265 (430)
T ss_pred eEeccCCChHH-HHHHHHHHHHHhCCc
Confidence 77779998542 345789999999976
No 35
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=50.58 E-value=83 Score=30.35 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCEEEEEcCCC-CC-----CHH-HHHHHHhcCCEEEEe----------ehh------hh--hhhcccCCC
Q 041159 200 DEMVVMIEELGFQVVVTRPNR-MS-----NLN-KFTEVVNSCSVLVGA----------HGA------GL--TTELFLPAG 254 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~-~~-----~~~-eq~~~~~~advlvg~----------HGA------gL--tn~lF~~pg 254 (356)
-++++.|.+.|++|.+..+.+ .. .+. ..-+.+.+||++|.| ++. ++ ..+=-||+|
T Consensus 15 ~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~ 94 (296)
T PRK08306 15 LELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH 94 (296)
T ss_pred HHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC
Confidence 468888999999998854431 11 111 223568999999998 433 22 334468899
Q ss_pred cEEEEEecCCCcCCCCCchHHHHhhcCCeEEEEE
Q 041159 255 AVMVQVVPLGLEWGSTYYFGVPAREMGVQYLEYK 288 (356)
Q Consensus 255 s~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~~y~ 288 (356)
..++ . |+ ........+...|+..+.|.
T Consensus 95 ~~v~--~--G~---~~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 95 CTIF--S--GI---ANPYLKELAKETNRKLVELF 121 (296)
T ss_pred CEEE--E--ec---CCHHHHHHHHHCCCeEEEEe
Confidence 7444 2 21 12235577888999988765
No 36
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=50.31 E-value=18 Score=36.01 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhh-hhcccCC--CcE
Q 041159 180 REKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLT-TELFLPA--GAV 256 (356)
Q Consensus 180 ~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLt-n~lF~~p--gs~ 256 (356)
..++.+-+|....-- .-|.+|+.++|+++|.+|...-+. ..+++| ++-+.+|++-|.++..+.. =.=+|.. |.-
T Consensus 142 ~~~~~VNiiG~~~~~-~~d~~el~~lL~~~Gi~v~~~~~~-~~t~~e-~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLG-PGDLEELKRLLEELGIEVNAVFPG-GTTLEE-IRKAPEAALNIVLCPEGGPYAAEWLEERFGIP 218 (398)
T ss_dssp TSSSEEEEEEESTBT-HHHHHHHHHHHHHTTEEEEEEEET-TBCHHH-HHHGGGSSEEEESSCCHHHHHHHHHHHHHT-E
T ss_pred CCCCceEEecCcCCC-cccHHHHHHHHHHCCCceEEEeCC-CCCHHH-HHhCCcCcEEEEeccchhhHHHHHHHHHhCCC
Confidence 344477788755321 168889999999999998876544 256554 5778899998888888555 4444444 777
Q ss_pred EEE-EecCCCcCCCCCchHHHHhhcC
Q 041159 257 MVQ-VVPLGLEWGSTYYFGVPAREMG 281 (356)
Q Consensus 257 viE-i~P~~~~~~~~~~y~~lA~~~g 281 (356)
.+. -.|.|++. ...+|..+|+.+|
T Consensus 219 ~~~~~~p~G~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 219 YLYFPSPYGIEG-TDAWLRAIAEALG 243 (398)
T ss_dssp EEEEC-SBSHHH-HHHHHHHHHHHHT
T ss_pred eeeccccccHHH-HHHHHHHHHHHhC
Confidence 777 67888542 3468999999999
No 37
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.20 E-value=35 Score=33.09 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=51.2
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEEe
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQVV 261 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi~ 261 (356)
-++++|.|.+. =-.-+..+|.+.|..|.++.-. + .+..+.+.+|||+|+.-|.. +-..=+.++|++||.+-
T Consensus 159 k~vvVIGrs~~----VG~pla~lL~~~gatVtv~~s~-t---~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvG 230 (286)
T PRK14175 159 KNAVVIGRSHI----VGQPVSKLLLQKNASVTILHSR-S---KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVG 230 (286)
T ss_pred CEEEEECCCch----hHHHHHHHHHHCCCeEEEEeCC-c---hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcC
Confidence 48899998752 1123556777789999887532 2 23446789999999999887 54555679999999875
No 38
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.74 E-value=1.5e+02 Score=28.69 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|.+. =-.=+..+|.+.|..|.++... +.++. +..++|||+|..-| +++-..=|.+||++||-+
T Consensus 157 k~vvViGrS~i----VGkPla~lL~~~~atVtichs~-T~~l~---~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDv 227 (282)
T PRK14169 157 KRVVIVGRSNI----VGRPLAGLMVNHDATVTIAHSK-TRNLK---QLTKEADILVVAVGVPHFIGADAVKPGAVVIDV 227 (282)
T ss_pred CEEEEECCCcc----chHHHHHHHHHCCCEEEEECCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCcEEEEe
Confidence 38899998864 1123556677778898887432 33343 46899999988777 567777788999999975
No 39
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.71 E-value=1.6e+02 Score=28.50 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=49.4
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|... =-.-+..+|.+.|..|.++... +-++ -+...+|||+|+.-| +++-..=|.+||++||-+
T Consensus 159 k~vvViGrS~~----VGkPla~lL~~~~AtVt~chs~-T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (278)
T PRK14172 159 KEVVVIGRSNI----VGKPVAQLLLNENATVTICHSK-TKNL---KEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDV 229 (278)
T ss_pred CEEEEECCCcc----chHHHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEe
Confidence 38899998864 1123556677778899887532 3333 345789999998777 456666678999999976
No 40
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=46.38 E-value=40 Score=35.25 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCCcEEEEEEcCC--CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCC--C
Q 041159 180 REKPVLIFISRGN--SRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPA--G 254 (356)
Q Consensus 180 ~~~pr~~~i~R~~--~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~p--g 254 (356)
..++++-+|.=.. .+.--|..|+.+.|++.|.+|..+-+. ..+ -++++-+.+|++-|.+++ .|..=.-+|.. |
T Consensus 156 ~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~-g~s-~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fG 233 (519)
T PRK02910 156 TARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPL-GAS-PADLKRLPAAWFNVVLYREIGESAARYLEREFG 233 (519)
T ss_pred CCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCC-CCC-HHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhC
Confidence 3456777775432 244567789999999999999876554 245 556677899999888876 46555555543 4
Q ss_pred cEEEEEecCCCcCCCCCchHHHHhhcCCe
Q 041159 255 AVMVQVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 255 s~viEi~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.-.+...|.|++ ....+-..+|+.+|+.
T Consensus 234 iP~i~~~PiG~~-~T~~fL~~la~~~g~~ 261 (519)
T PRK02910 234 QPYVKTVPIGVG-ATARFIREVAELLNLD 261 (519)
T ss_pred CcccccccccHH-HHHHHHHHHHHHhCCC
Confidence 545667899954 2345778889888864
No 41
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.14 E-value=1.7e+02 Score=28.37 Aligned_cols=70 Identities=26% Similarity=0.378 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|.+. =-.-+..+|.+.|..|.++... +.++. +..++|||+|+.-| +++-..=|.+||++||-+
T Consensus 158 k~vvViGrS~i----VGkPla~lL~~~~AtVtichs~-T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDv 228 (282)
T PRK14182 158 KRALVVGRSNI----VGKPMAMMLLERHATVTIAHSR-TADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVVIDV 228 (282)
T ss_pred CEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEe
Confidence 48899998864 1123566777778888887542 33444 56789999998877 456666678999999975
No 42
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=45.78 E-value=1.3e+02 Score=30.18 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=50.3
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|.+. =-.-+..+|.+.|..|.++... +-++. +..++|||+|+.-| +++-..=|.+||++||-+
T Consensus 232 K~vvVIGRS~i----VGkPLa~LL~~~~ATVTicHs~-T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDV 302 (364)
T PLN02616 232 KRAVVIGRSNI----VGMPAALLLQREDATVSIVHSR-TKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVVIDV 302 (364)
T ss_pred CEEEEECCCcc----ccHHHHHHHHHCCCeEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEec
Confidence 48899998863 1123556677778888887542 33344 45799999998777 567677788999999975
No 43
>PRK13337 putative lipid kinase; Reviewed
Probab=45.08 E-value=1.7e+02 Score=27.98 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEeehhhhhhhcc---cCCC-cEEEEEecCC
Q 041159 197 LNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV--NSCSVLVGAHGAGLTTELF---LPAG-AVMVQVVPLG 264 (356)
Q Consensus 197 ~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlvg~HGAgLtn~lF---~~pg-s~viEi~P~~ 264 (356)
...+++.+.|++.|+++.+...+..-...+.++.. .+.|+||.+=|=|-.|.+= +..+ ...+=++|.|
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 34567888899999886654443334566666544 4578999888877654432 2222 3457789998
No 44
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.97 E-value=1.6e+02 Score=28.52 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=53.5
Q ss_pred HHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh-
Q 041159 165 REAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA- 243 (356)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA- 243 (356)
.+.|+++. ..-++++|.|.+. =-.=+..+|.+.|..|.++... +-++ ....++|||+|..-|-
T Consensus 146 L~~~~i~l--------~Gk~vvViGrS~i----VGkPla~lL~~~~aTVtichs~-T~~l---~~~~~~ADIvIsAvGkp 209 (287)
T PRK14173 146 LKHYGIPL--------AGKEVVVVGRSNI----VGKPLAALLLREDATVTLAHSK-TQDL---PAVTRRADVLVVAVGRP 209 (287)
T ss_pred HHHcCCCC--------CCCEEEEECCCCc----cHHHHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEecCCc
Confidence 34566653 2348899998874 1113556666778888877532 3333 4568899999988774
Q ss_pred hhhhhcccCCCcEEEEE
Q 041159 244 GLTTELFLPAGAVMVQV 260 (356)
Q Consensus 244 gLtn~lF~~pgs~viEi 260 (356)
++-..=|.+||++||-+
T Consensus 210 ~~i~~~~vk~GavVIDV 226 (287)
T PRK14173 210 HLITPEMVRPGAVVVDV 226 (287)
T ss_pred CccCHHHcCCCCEEEEc
Confidence 45555577899999975
No 45
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=44.94 E-value=1.6e+02 Score=28.03 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEeehhhh----hhhcccCC-Cc-EEEEEecCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV--NSCSVLVGAHGAGL----TTELFLPA-GA-VMVQVVPLG 264 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlvg~HGAgL----tn~lF~~p-gs-~viEi~P~~ 264 (356)
...++++.|++.|+++.+...+..-...++++.. .+.|+||.+=|=|- .|.++-.+ +. .-+=++|.|
T Consensus 15 ~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 15 DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 4557788888888886654433224556666443 56789999999884 45554221 22 347789998
No 46
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=44.50 E-value=1.1e+02 Score=29.26 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=55.2
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCE--EEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhh---------hcccC
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGFQ--VVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTT---------ELFLP 252 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf~--v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn---------~lF~~ 252 (356)
++++++|+.. .....+++.+.+.+.+.. +...+.+ +..+.-+.+..+|+||...-.|+.. .-+++
T Consensus 152 ~V~I~~R~~~-~~~~a~~l~~~l~~~~~~~~~~~~d~~---~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~ 227 (289)
T PRK12548 152 EITIFNIKDD-FYERAEQTAEKIKQEVPECIVNVYDLN---DTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFR 227 (289)
T ss_pred EEEEEeCCch-HHHHHHHHHHHHhhcCCCceeEEechh---hhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcC
Confidence 4788887641 011234555555544322 2222221 1222234667889999877777643 12477
Q ss_pred CCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 253 AGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 253 pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
++..|++++-.- .++.+-..|+..|.+..
T Consensus 228 ~~~~v~D~vY~P----~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 228 KDLVVADTVYNP----KKTKLLEDAEAAGCKTV 256 (289)
T ss_pred CCCEEEEecCCC----CCCHHHHHHHHCCCeee
Confidence 888999987321 24678899999998754
No 47
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.66 E-value=1.7e+02 Score=28.42 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. =-.-+..+|.+.|..|.++.-. +- +.-+...+|||+|..-| +++-..=|.++|++||.+
T Consensus 159 Gk~vvViGrs~i----VG~Pla~lL~~~~atVtv~hs~-T~---~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDv 230 (285)
T PRK10792 159 GLNAVVVGASNI----VGRPMSLELLLAGCTVTVCHRF-TK---NLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDV 230 (285)
T ss_pred CCEEEEECCCcc----cHHHHHHHHHHCCCeEEEEECC-CC---CHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEc
Confidence 348899998763 2223566777788999887532 22 33356899999999876 455555678999999986
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 231 G 231 (285)
T PRK10792 231 G 231 (285)
T ss_pred c
Confidence 4
No 48
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.66 E-value=1.8e+02 Score=28.18 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|... =-.-+..+|.+.|..|.++... +-+ .-+...+|||+|+.-| +++-..=|.+||++||-+
T Consensus 158 k~vvVvGrS~i----VGkPla~lL~~~~atVt~chs~-T~n---l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDv 228 (282)
T PRK14166 158 KDAVIIGASNI----VGRPMATMLLNAGATVSVCHIK-TKD---LSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDV 228 (282)
T ss_pred CEEEEECCCCc----chHHHHHHHHHCCCEEEEeCCC-CCC---HHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEe
Confidence 38899998864 1123556677778899877532 223 3346899999998877 566666688999999975
No 49
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.65 E-value=1.9e+02 Score=27.90 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=55.5
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG- 242 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG- 242 (356)
|.+.|+++. ..-++++|.|.+. + -.-+..+|.+.|..|.++.. .+-.+ .+...+|||+|..-|
T Consensus 147 lL~~~~i~l--------~Gk~vvViGrS~~---V-G~Pla~lL~~~~AtVti~hs-~T~~l---~~~~~~ADIvV~AvGk 210 (281)
T PRK14183 147 LLEEYEIDV--------KGKDVCVVGASNI---V-GKPMAALLLNANATVDICHI-FTKDL---KAHTKKADIVIVGVGK 210 (281)
T ss_pred HHHHcCCCC--------CCCEEEEECCCCc---c-hHHHHHHHHHCCCEEEEeCC-CCcCH---HHHHhhCCEEEEecCc
Confidence 345566643 2338899998864 1 11355666677888887642 22233 457899999998877
Q ss_pred hhhhhhcccCCCcEEEEEe
Q 041159 243 AGLTTELFLPAGAVMVQVV 261 (356)
Q Consensus 243 AgLtn~lF~~pgs~viEi~ 261 (356)
++|-..=|.+||++||.+-
T Consensus 211 p~~i~~~~vk~gavvIDvG 229 (281)
T PRK14183 211 PNLITEDMVKEGAIVIDIG 229 (281)
T ss_pred ccccCHHHcCCCcEEEEee
Confidence 5677777889999999863
No 50
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.64 E-value=1.9e+02 Score=28.16 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|.+. =-.=+..+|.+.|..|.++... +.++ -+..++|||+|..-| +++-..=|.+||++||-+
T Consensus 159 k~vvVIGrS~i----VGkPla~lL~~~~atVtv~hs~-T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDv 229 (297)
T PRK14186 159 KKAVVVGRSIL----VGKPLALMLLAANATVTIAHSR-TQDL---ASITREADILVAAAGRPNLIGAEMVKPGAVVVDV 229 (297)
T ss_pred CEEEEECCCcc----chHHHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 37899998864 1123556777778999887532 3333 346789999998777 345555588999999975
No 51
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.79 E-value=2e+02 Score=27.89 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=53.1
Q ss_pred HHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe
Q 041159 165 REAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEEL----GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlvg~ 240 (356)
.+.|+++. ..-++++|.|... + -.-+..+|.+. +..|.++... +.++. +..++|||+|+.
T Consensus 144 L~~~~i~l--------~Gk~vvViGrS~i---V-GkPla~lL~~~~~~~~AtVtvchs~-T~~l~---~~~~~ADIvV~A 207 (287)
T PRK14181 144 LKYYEIPL--------HGRHVAIVGRSNI---V-GKPLAALLMQKHPDTNATVTLLHSQ-SENLT---EILKTADIIIAA 207 (287)
T ss_pred HHHhCCCC--------CCCEEEEECCCcc---c-hHHHHHHHHhCcCCCCCEEEEeCCC-CCCHH---HHHhhCCEEEEc
Confidence 35667653 2348899998864 1 11345566555 6788877532 33343 457999999987
Q ss_pred eh-hhhhhhcccCCCcEEEEE
Q 041159 241 HG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 241 HG-AgLtn~lF~~pgs~viEi 260 (356)
-| +++-..=|.+||++||-+
T Consensus 208 vG~p~~i~~~~ik~GavVIDv 228 (287)
T PRK14181 208 IGVPLFIKEEMIAEKAVIVDV 228 (287)
T ss_pred cCCcCccCHHHcCCCCEEEEe
Confidence 77 456666688999999975
No 52
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.70 E-value=1.5e+02 Score=28.76 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
-++++|.|.+. =-.-+..+|.+.|..|.++... +- +..+..++|||+|+.-| +++-..=|.+||++||-+
T Consensus 159 k~vvViGrS~~----VGkPla~lL~~~~ATVt~chs~-T~---dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDv 229 (282)
T PRK14180 159 AYAVVVGASNV----VGKPVSQLLLNAKATVTTCHRF-TT---DLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDV 229 (282)
T ss_pred CEEEEECCCCc----chHHHHHHHHHCCCEEEEEcCC-CC---CHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEe
Confidence 38899998874 1113556667778899887532 23 33445899999998877 556666778999999975
No 53
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=41.34 E-value=48 Score=29.27 Aligned_cols=53 Identities=26% Similarity=0.510 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh-cCCEEEEeehhh---hhhhcccC
Q 041159 200 DEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVN-SCSVLVGAHGAG---LTTELFLP 252 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~-~advlvg~HGAg---Ltn~lF~~ 252 (356)
+++++..++.|++|+.++......+++....+. .+-+++|.-|+| |.|.+.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 567888899999999887654567888777775 566799999987 77777654
No 54
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.85 E-value=2.2e+02 Score=27.76 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh-hhhhhcccCCCcEEEEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA-GLTTELFLPAGAVMVQV 260 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA-gLtn~lF~~pgs~viEi 260 (356)
-++++|.|.+. =-.-+..+|.+.|..|.++... +-++. +..++|||+|..-|- ++-..=|.+||++||-+
T Consensus 161 k~vvViGrS~i----VGkPla~lL~~~~aTVt~chs~-T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDV 231 (294)
T PRK14187 161 SDAVVIGRSNI----VGKPMACLLLGENCTVTTVHSA-TRDLA---DYCSKADILVAAVGIPNFVKYSWIKKGAIVIDV 231 (294)
T ss_pred CEEEEECCCcc----chHHHHHHHhhCCCEEEEeCCC-CCCHH---HHHhhCCEEEEccCCcCccCHHHcCCCCEEEEe
Confidence 38899998864 1123556677778899887542 33333 468999999988874 55556677899999976
No 55
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.84 E-value=2.2e+02 Score=27.58 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=49.5
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEEe
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQVV 261 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi~ 261 (356)
-++++|.|.+. =-.-+..+|.+.|..|.++... +- +.-+...+|||+|..-| +++-..=|.+||++||.+-
T Consensus 165 k~vvViGrs~i----VGkPla~lL~~~~atVtv~hs~-T~---~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvG 236 (287)
T PRK14176 165 KNAVIVGHSNV----VGKPMAAMLLNRNATVSVCHVF-TD---DLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVG 236 (287)
T ss_pred CEEEEECCCcc----cHHHHHHHHHHCCCEEEEEecc-CC---CHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEec
Confidence 48899998763 2224566777789999887532 22 33456899999996544 4555666889999999864
No 56
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=39.80 E-value=2.2e+02 Score=27.78 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh-hhhhhcccCCCcEEEEEe
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA-GLTTELFLPAGAVMVQVV 261 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA-gLtn~lF~~pgs~viEi~ 261 (356)
-++++|.|.+. =-.=+..+|.+.|..|.++... +-++. +...+|||+|..-|- ++-..=|.+||++||-+-
T Consensus 168 k~vvVIGRS~i----VGkPla~lL~~~~ATVtvchs~-T~nl~---~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvG 239 (299)
T PLN02516 168 KKAVVVGRSNI----VGLPVSLLLLKADATVTVVHSR-TPDPE---SIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVG 239 (299)
T ss_pred CEEEEECCCcc----chHHHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEee
Confidence 48999998864 1123556667778999887542 33343 467999999987764 455555788999999763
No 57
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=38.77 E-value=2.3e+02 Score=27.43 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=57.9
Q ss_pred EEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEEEEeehhhhhh----hcccCCCcE
Q 041159 185 LIFISRGNS--RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVN--SCSVLVGAHGAGLTT----ELFLPAGAV 256 (356)
Q Consensus 185 ~~~i~R~~~--R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~--~advlvg~HGAgLtn----~lF~~pgs~ 256 (356)
.+++.+... .--...+++.+.|++.|+++.+...+..-...+-++.+. .-|.||+.=|-|-.| .++-.+.-.
T Consensus 6 ~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~ 85 (301)
T COG1597 6 LLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP 85 (301)
T ss_pred EEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc
Confidence 345555444 333455678899999999887665543224444444433 789999999988655 566555444
Q ss_pred EEEEecCCCcCCCCCchHHHHhhcCCe
Q 041159 257 MVQVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 257 viEi~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
+=|+|.|. ....|+.+|+.
T Consensus 86 -LgilP~GT-------~NdfAr~Lgip 104 (301)
T COG1597 86 -LGILPGGT-------ANDFARALGIP 104 (301)
T ss_pred -eEEecCCc-------hHHHHHHcCCC
Confidence 88999993 23556666643
No 58
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.77 E-value=2.3e+02 Score=27.46 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=52.8
Q ss_pred HHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHH--cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh
Q 041159 165 REAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEE--LGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG 242 (356)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~--~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG 242 (356)
.+.|+++. ..-++++|.|.+. + -.-+..+|.+ .|..|.++... +.++. +..++|||+|+.-|
T Consensus 149 l~~~~i~l--------~Gk~vvViGrS~~---V-GkPla~lL~~~~~~atVtvchs~-T~~l~---~~~k~ADIvV~AvG 212 (284)
T PRK14193 149 LRRYDVEL--------AGAHVVVIGRGVT---V-GRPIGLLLTRRSENATVTLCHTG-TRDLA---AHTRRADIIVAAAG 212 (284)
T ss_pred HHHhCCCC--------CCCEEEEECCCCc---c-hHHHHHHHhhccCCCEEEEeCCC-CCCHH---HHHHhCCEEEEecC
Confidence 35666653 2348899998874 1 1124455555 57888877532 33444 55789999999877
Q ss_pred h-hhhhhcccCCCcEEEEE
Q 041159 243 A-GLTTELFLPAGAVMVQV 260 (356)
Q Consensus 243 A-gLtn~lF~~pgs~viEi 260 (356)
- ++-..=|.+||++||-+
T Consensus 213 kp~~i~~~~ik~GavVIDv 231 (284)
T PRK14193 213 VAHLVTADMVKPGAAVLDV 231 (284)
T ss_pred CcCccCHHHcCCCCEEEEc
Confidence 4 45555678999999975
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=38.31 E-value=1.4e+02 Score=25.38 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=37.6
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSV 236 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv 236 (356)
+++++++..=.+...-+...-+..+|+..||+|+.+-. ..|.++.++...+.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~--~vp~e~i~~~a~~~~~ 55 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV--MTSQEEFIDAAIETDA 55 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCC
Confidence 35566666555555555555566788889999998755 4899999988876444
No 60
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.90 E-value=2.1e+02 Score=27.78 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=52.7
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHH----cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEE
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEE----LGFQVVVTRPNRMSNLNKFTEVVNSCSVLVG 239 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~----~gf~v~~~~~~~~~~~~eq~~~~~~advlvg 239 (356)
|.+.|+++.. .-++++|.|.+. =-.-+..+|.+ .|..|.++... + ....+.+.+|||+|+
T Consensus 147 lL~~~~i~l~--------Gk~vvViGrS~i----VG~Pla~lL~~~~~~~~AtVt~~hs~-t---~~l~~~~~~ADIVI~ 210 (286)
T PRK14184 147 LLERYGLSPA--------GKKAVVVGRSNI----VGKPLALMLGAPGKFANATVTVCHSR-T---PDLAEECREADFLFV 210 (286)
T ss_pred HHHHhCCCCC--------CCEEEEECCCcc----chHHHHHHHhCCcccCCCEEEEEeCC-c---hhHHHHHHhCCEEEE
Confidence 3455676532 338899998864 12235556666 57788776532 2 234456899999999
Q ss_pred eehhh-hhhhcccCCCcEEEEEe
Q 041159 240 AHGAG-LTTELFLPAGAVMVQVV 261 (356)
Q Consensus 240 ~HGAg-Ltn~lF~~pgs~viEi~ 261 (356)
.-|.. +-..=|.+||++||-+-
T Consensus 211 AvG~p~li~~~~vk~GavVIDVG 233 (286)
T PRK14184 211 AIGRPRFVTADMVKPGAVVVDVG 233 (286)
T ss_pred ecCCCCcCCHHHcCCCCEEEEee
Confidence 88763 32333569999999764
No 61
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.83 E-value=1.2e+02 Score=26.35 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=38.2
Q ss_pred CCCcEEEEEEcCCC---ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEeehhhhhhhccc
Q 041159 180 REKPVLIFISRGNS---RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSV-LVGAHGAGLTTELFL 251 (356)
Q Consensus 180 ~~~pr~~~i~R~~~---R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lvg~HGAgLtn~lF~ 251 (356)
.+|||+++..=.-. |.. .-+..+++..||+|+..-. ..+-.|-++..-..|+ +||+-+-.-.|.-.+
T Consensus 10 g~rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~g~--~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~ 80 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINLGL--FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLV 80 (143)
T ss_pred CCCceEEEeccCccccccch---HHHHHHHHhCCceEEecCC--cCCHHHHHHHHHhcCCCEEEEEeccchHHHHH
Confidence 47888887653211 332 2345788889999988543 2566666666633333 445554444444333
No 62
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=36.68 E-value=95 Score=23.81 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCEEEEEcC---CCCCCHHHHHHHHhcCCEEEEeehhhhh
Q 041159 201 EMVVMIEELGFQVVVTRP---NRMSNLNKFTEVVNSCSVLVGAHGAGLT 246 (356)
Q Consensus 201 ev~~~l~~~gf~v~~~~~---~~~~~~~eq~~~~~~advlvg~HGAgLt 246 (356)
.+.+.+.+.|++.+..+. ....+..-..+.+.+||+.||.=|.--.
T Consensus 17 ~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG 65 (83)
T PF13271_consen 17 ALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYG 65 (83)
T ss_pred HHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccC
Confidence 345666666776654432 2345677778889999999999886433
No 63
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=36.55 E-value=60 Score=32.66 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=61.3
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee---hhhhhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH---GAGLTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H---GAgLtn~lF~~pgs~vi 258 (356)
+..+-+|.=. ...-|.+|+.+.|++.|.+++..-+. ..+++|. +-+.+|.+-|.+. |..++..|=-+=|.-.+
T Consensus 158 ~~~VNiig~~--~~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~eei-~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~ 233 (410)
T cd01968 158 PYDINLIGEF--NVAGELWGVKPLLEKLGIRVLASITG-DSRVDEI-RRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYI 233 (410)
T ss_pred CCcEEEECCC--CCcccHHHHHHHHHHcCCeEEEEeCC-CCCHHHH-HhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 3456666522 33457789999999999999864343 3566665 5566777666442 33344433223466666
Q ss_pred EEecCCCcCCCCCchHHHHhhcCCe
Q 041159 259 QVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 259 Ei~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
...|.|++. ...+++.+|+.+|..
T Consensus 234 ~~~p~G~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 234 EVSFYGIRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred ecCcCcHHH-HHHHHHHHHHHhCCc
Confidence 767788542 346889999999864
No 64
>PRK11914 diacylglycerol kinase; Reviewed
Probab=36.46 E-value=1.6e+02 Score=28.15 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEeehhhhhhhcc---cCCCcEEEEEecCCC
Q 041159 196 FLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV--NSCSVLVGAHGAGLTTELF---LPAGAVMVQVVPLGL 265 (356)
Q Consensus 196 i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlvg~HGAgLtn~lF---~~pgs~viEi~P~~~ 265 (356)
-...+++++.|++.|+++.+...+..-...++++.. .++|+||.+=|=|-.|.+= +..+ .-+=++|.|.
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~~-~~lgiiP~GT 98 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAGTD-IPLGIIPAGT 98 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccCC-CcEEEEeCCC
Confidence 344567888999999887654433223345555433 5679999988888655432 3333 4477899983
No 65
>PRK13059 putative lipid kinase; Reviewed
Probab=36.34 E-value=2.6e+02 Score=26.61 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHH-H-HhcCCEEEEeehhhhhhhcc---cCCC-cEEEEEecCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTE-V-VNSCSVLVGAHGAGLTTELF---LPAG-AVMVQVVPLGL 265 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~-~-~~~advlvg~HGAgLtn~lF---~~pg-s~viEi~P~~~ 265 (356)
..+++.+.+++.|+++.+......... ++++ . -.++|+||.+=|=|-.|.+= +..+ ..-+=++|.|.
T Consensus 20 ~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~GT 92 (295)
T PRK13059 20 ELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVGT 92 (295)
T ss_pred HHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCCC
Confidence 346788889999999776544322222 3332 2 24579999999988655431 3222 24477999983
No 66
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=36.30 E-value=45 Score=32.73 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCC-CcC----CCCCchH
Q 041159 200 DEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLG-LEW----GSTYYFG 274 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~-~~~----~~~~~y~ 274 (356)
.|++++|+..||+++++|.-.----+-.+.-+.++-+++...|+|=--... + +-++||-=.- +|- .+..-+.
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~i-K--~GimEiaDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGI-K--AGIMEIADIIVINKADRKGAEKAAR 209 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHH-H--hhhhhhhheeeEeccChhhHHHHHH
Confidence 478999999999999998631111233444555666677777776433322 1 3344432111 111 1223466
Q ss_pred HHHhhcCCeE
Q 041159 275 VPAREMGVQY 284 (356)
Q Consensus 275 ~lA~~~gl~Y 284 (356)
.+..++.+.+
T Consensus 210 ~l~~al~~~~ 219 (323)
T COG1703 210 ELRSALDLLR 219 (323)
T ss_pred HHHHHHHhhc
Confidence 7777777665
No 67
>PRK13054 lipid kinase; Reviewed
Probab=36.16 E-value=2.5e+02 Score=26.79 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=48.4
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEeehhhhhh----hcccCC-Cc-
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV--NSCSVLVGAHGAGLTT----ELFLPA-GA- 255 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlvg~HGAgLtn----~lF~~p-gs- 255 (356)
++++|--.+++.-....++++.|++.|+++.+...+..-...++++.. .+.|+||.+=|=|--| .+.-.+ +.
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~~~ 84 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQLEGDAR 84 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhccCCC
Confidence 434443344443345567778888889886654333224456666443 5689999988888544 443112 22
Q ss_pred EEEEEecCC
Q 041159 256 VMVQVVPLG 264 (356)
Q Consensus 256 ~viEi~P~~ 264 (356)
.-+=++|.|
T Consensus 85 ~~lgiiP~G 93 (300)
T PRK13054 85 PALGILPLG 93 (300)
T ss_pred CcEEEEeCC
Confidence 357799998
No 68
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=36.11 E-value=1.1e+02 Score=26.70 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=44.8
Q ss_pred CcEEEEEEcCCC---ccccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH---hcCCEEEEeehhhhhhhcccCC
Q 041159 182 KPVLIFISRGNS---RKFLNEDEMVVMIEELGFQVVVTR--PNRMSNLNKFTEVV---NSCSVLVGAHGAGLTTELFLPA 253 (356)
Q Consensus 182 ~pr~~~i~R~~~---R~i~N~~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~---~~advlvg~HGAgLtn~lF~~p 253 (356)
++|+.+|.=.+. ..=.|-.-+.+.|++.|+++.... +++.-.+.+.++-. +++|+||.-=|+|.+--=+.++
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~e 83 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPE 83 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHH
Confidence 456555532222 222355667788999999886532 33334566666554 4699999998888776555554
No 69
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=36.08 E-value=1.4e+02 Score=26.97 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=43.5
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhh
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGL 245 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgL 245 (356)
..++++||.-...-.=-..++..+++++.|+++..+..-...+-++..+.+.+||+|+=.=|...
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~ 92 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQL 92 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHH
Confidence 46799999766542112335677888888998875543212456788899999999876555543
No 70
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=35.34 E-value=72 Score=30.99 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=42.3
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhh----hhhcccCCCcEEEE
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGL----TTELFLPAGAVMVQ 259 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgL----tn~lF~~pgs~viE 259 (356)
++.+.+|+ --+.+++++.++++|+++...+ +.+ +.+.+||||+..-++.- -..=|++||+.|+-
T Consensus 155 ~v~v~~r~----~~~~~~~~~~~~~~~~~v~~~~-----~~~---~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~ 222 (313)
T PF02423_consen 155 EVRVYSRS----PERAEAFAARLRDLGVPVVAVD-----SAE---EAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINA 222 (313)
T ss_dssp EEEEE-SS----HHHHHHHHHHHHCCCTCEEEES-----SHH---HHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE
T ss_pred EEEEEccC----hhHHHHHHHhhccccccceecc-----chh---hhcccCCEEEEccCCCCCCccccHHHcCCCcEEEE
Confidence 56667654 3555778888877888887764 222 45899999999988876 55568899999887
Q ss_pred EecCC
Q 041159 260 VVPLG 264 (356)
Q Consensus 260 i~P~~ 264 (356)
|=.+.
T Consensus 223 iGs~~ 227 (313)
T PF02423_consen 223 IGSYT 227 (313)
T ss_dssp -S-SS
T ss_pred ecCCC
Confidence 65543
No 71
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.18 E-value=1.2e+02 Score=25.85 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEeeh
Q 041159 200 DEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSV-LVGAHG 242 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lvg~HG 242 (356)
.-+..+|+..||+|+.+-. ..|.++.++.....|+ +||+-+
T Consensus 19 ~iv~~~l~~~GfeVi~LG~--~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGV--LSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred HHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEec
Confidence 3455788889999988654 4899999998877665 556543
No 72
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=34.78 E-value=1.4e+02 Score=26.27 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=42.9
Q ss_pred EEEEEEcCCCccccCHHHHHHHHH-HcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhh----cccCCCcEEE
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIE-ELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTE----LFLPAGAVMV 258 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~-~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~----lF~~pgs~vi 258 (356)
++++++|+.. ..+++.+.++ ..+.++...+. .+..+..+.++++|++|..-.+|..+. .+.+++.+++
T Consensus 54 ~V~l~~R~~~----~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~ 126 (194)
T cd01078 54 RVVLVGRDLE----RAQKAADSLRARFGEGVGAVET---SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAA 126 (194)
T ss_pred EEEEEcCCHH----HHHHHHHHHHhhcCCcEEEeeC---CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEE
Confidence 6777887532 2334444443 24666655443 456666788899999999888887421 1233466777
Q ss_pred EEe
Q 041159 259 QVV 261 (356)
Q Consensus 259 Ei~ 261 (356)
.+.
T Consensus 127 D~~ 129 (194)
T cd01078 127 DVN 129 (194)
T ss_pred Ecc
Confidence 643
No 73
>PRK13055 putative lipid kinase; Reviewed
Probab=34.28 E-value=2.8e+02 Score=27.00 Aligned_cols=68 Identities=15% Similarity=0.343 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHcCCEEEEEcCC-CCCCHHHHHHHH--hcCCEEEEeehhhhhhhcc---cC-CCcEEEEEecCC
Q 041159 197 LNEDEMVVMIEELGFQVVVTRPN-RMSNLNKFTEVV--NSCSVLVGAHGAGLTTELF---LP-AGAVMVQVVPLG 264 (356)
Q Consensus 197 ~N~~ev~~~l~~~gf~v~~~~~~-~~~~~~eq~~~~--~~advlvg~HGAgLtn~lF---~~-pgs~viEi~P~~ 264 (356)
...+++.+.|++.|+++.+.... ......++++.. .+.|+||.+=|=|-.|.+- +. .....+=|+|.|
T Consensus 20 ~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 20 KNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 34567888899999886654332 113444444433 4679999988888655333 12 223457899998
No 74
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=34.22 E-value=1.8e+02 Score=27.81 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=50.6
Q ss_pred CcEEEEEEcCC--Ccccc--CHHHHHHHHHHcCCEEEEE-cC-------------------CCCCCHHHHHHHHhcCCEE
Q 041159 182 KPVLIFISRGN--SRKFL--NEDEMVVMIEELGFQVVVT-RP-------------------NRMSNLNKFTEVVNSCSVL 237 (356)
Q Consensus 182 ~pr~~~i~R~~--~R~i~--N~~ev~~~l~~~gf~v~~~-~~-------------------~~~~~~~eq~~~~~~advl 237 (356)
++.++++.-.. .|++- +-.|+++.+.+.|+++++. .. ...+++.|-+.+++.||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 34444444322 27665 4467887777678887653 11 1147899999999999999
Q ss_pred EEeehhhhhhhcccCCCcEEEEEecCC
Q 041159 238 VGAHGAGLTTELFLPAGAVMVQVVPLG 264 (356)
Q Consensus 238 vg~HGAgLtn~lF~~pgs~viEi~P~~ 264 (356)
||.=. |..|+--+ =|+-+|-|+.+.
T Consensus 258 I~nDS-Gp~HlA~A-~g~p~valfGpt 282 (322)
T PRK10964 258 VSVDT-GLSHLTAA-LDRPNITLYGPT 282 (322)
T ss_pred EecCC-cHHHHHHH-hCCCEEEEECCC
Confidence 99854 33443321 245667777554
No 75
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=33.84 E-value=80 Score=28.94 Aligned_cols=76 Identities=11% Similarity=0.193 Sum_probs=50.3
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEc--------------CCCC--CCHHH-HHHHHhcCCEEEEeehh
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTR--------------PNRM--SNLNK-FTEVVNSCSVLVGAHGA 243 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~--------------~~~~--~~~~e-q~~~~~~advlvg~HGA 243 (356)
..-++++|.|... =-.-+..+|.+.|..|.+++ ...+ -+.+. -.+.+++|||+|..=|-
T Consensus 61 ~GK~vvVIGrS~i----VGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 61 YGKTITIINRSEV----VGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCEEEEECCCcc----chHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 3448999998863 11235667777889998873 1110 11122 33568999999988775
Q ss_pred h-h-hhhcccCCCcEEEEE
Q 041159 244 G-L-TTELFLPAGAVMVQV 260 (356)
Q Consensus 244 g-L-tn~lF~~pgs~viEi 260 (356)
. + -..=|.+||++||-+
T Consensus 137 ~~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 137 PNYKVPTELLKDGAICINF 155 (197)
T ss_pred CCCccCHHHcCCCcEEEEc
Confidence 4 3 466788999999975
No 76
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.46 E-value=1.1e+02 Score=31.94 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=69.0
Q ss_pred CCCcEEEEEEcCC--CccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe-ehhhhhhhcccCC--C
Q 041159 180 REKPVLIFISRGN--SRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGA-HGAGLTTELFLPA--G 254 (356)
Q Consensus 180 ~~~pr~~~i~R~~--~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~-HGAgLtn~lF~~p--g 254 (356)
..++++=+|.-.. .+.--|..|+.+.|++.|.+|..+-+. ..+++| ++-+.+|++=|.+ +-.|+.-+=+|.. |
T Consensus 161 ~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~-g~sl~d-i~~~~~A~~NIvl~~~~g~~~A~~Le~~fg 238 (513)
T CHL00076 161 TDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPE-GGSVED-LKNLPKAWFNIVPYREVGLMTAKYLEKEFG 238 (513)
T ss_pred CCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECC-CCCHHH-HHhcccCcEEEEechhhhHHHHHHHHHHhC
Confidence 3456777776552 255678889999999999999865554 356555 5668888886666 3355555555554 5
Q ss_pred cEEEEEecCCCcCCCCCchHHHHhhcCCe
Q 041159 255 AVMVQVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 255 s~viEi~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.-.+...|.|+. ....+-..+|+.+|..
T Consensus 239 iP~i~~~PiGi~-~T~~fLr~la~~lg~~ 266 (513)
T CHL00076 239 MPYISTTPMGIV-DTAECIRQIQKILNKL 266 (513)
T ss_pred CCeEeeccCCHH-HHHHHHHHHHHHhCCC
Confidence 666777899953 2345778999998864
No 77
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=33.34 E-value=3.7e+02 Score=25.33 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=48.6
Q ss_pred EEEEEEcCCC--cc-ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEeehhhhhh----hcccCCC
Q 041159 184 VLIFISRGNS--RK-FLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV--NSCSVLVGAHGAGLTT----ELFLPAG 254 (356)
Q Consensus 184 r~~~i~R~~~--R~-i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlvg~HGAgLtn----~lF~~pg 254 (356)
|+.+|-...+ .+ --..+++.+.+++.|+++.+......-...++++.. ..+|++|.+=|=|--| .+.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~ 82 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQLDD 82 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcCCC
Confidence 5556655532 21 223456888888889887665443222445555422 3578999888877654 4544333
Q ss_pred cEEEEEecCC
Q 041159 255 AVMVQVVPLG 264 (356)
Q Consensus 255 s~viEi~P~~ 264 (356)
...+=++|.|
T Consensus 83 ~~~lgiiP~G 92 (293)
T TIGR00147 83 IPALGILPLG 92 (293)
T ss_pred CCcEEEEcCc
Confidence 3467788988
No 78
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.13 E-value=2.9e+02 Score=26.89 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=53.1
Q ss_pred HHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEE
Q 041159 164 LREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEEL----GFQVVVTRPNRMSNLNKFTEVVNSCSVLVG 239 (356)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlvg 239 (356)
|.+.|+++. ..-++++|.|.+. +. .=+..+|.+. +..|.++.. .+-++ -+..++|||+|+
T Consensus 147 lL~~~~i~l--------~Gk~vvViGrS~i---VG-kPla~lL~~~~~~~~aTVtvchs-~T~~l---~~~~~~ADIvIs 210 (297)
T PRK14167 147 LLAAAGVDT--------EGADVVVVGRSDI---VG-KPMANLLIQKADGGNATVTVCHS-RTDDL---AAKTRRADIVVA 210 (297)
T ss_pred HHHHhCCCC--------CCCEEEEECCCcc---cH-HHHHHHHhcCccCCCCEEEEeCC-CCCCH---HHHHhhCCEEEE
Confidence 345666643 2337899998874 11 1244455444 678877643 23333 356899999999
Q ss_pred eeh-hhhhhhcccCCCcEEEEE
Q 041159 240 AHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 240 ~HG-AgLtn~lF~~pgs~viEi 260 (356)
.-| +++-..=|.+||++||-+
T Consensus 211 AvGkp~~i~~~~ik~gaiVIDv 232 (297)
T PRK14167 211 AAGVPELIDGSMLSEGATVIDV 232 (297)
T ss_pred ccCCcCccCHHHcCCCCEEEEc
Confidence 776 567777788999999975
No 79
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=33.12 E-value=73 Score=27.13 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH-hcCCEEEEeehhhhhhh
Q 041159 196 FLNEDEMVVMIEELGFQVVVTR--PNRMSNLNKFTEVV-NSCSVLVGAHGAGLTTE 248 (356)
Q Consensus 196 i~N~~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~-~~advlvg~HGAgLtn~ 248 (356)
=.|..-+.+.|+++|+++.... +++.-.+.++++.. .++|+||..=|+|.+.-
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~~ 81 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGPR 81 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCC
Confidence 3466677889999999987543 23223566666543 67999999988777543
No 80
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.77 E-value=2.9e+02 Score=26.95 Aligned_cols=71 Identities=18% Similarity=0.350 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEEL----GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAV 256 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~ 256 (356)
.-++++|.|.+. +. .-+..+|.+. +..|.++... +-++. +..++|||+|+.-| +++-..=|.+||++
T Consensus 161 Gk~vvViGrS~i---VG-kPla~lL~~~~~~~~atVtv~hs~-T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gav 232 (297)
T PRK14168 161 GAEVVVVGRSNI---VG-KPIANMMTQKGPGANATVTIVHTR-SKNLA---RHCQRADILIVAAGVPNLVKPEWIKPGAT 232 (297)
T ss_pred CCEEEEECCCCc---cc-HHHHHHHHhcccCCCCEEEEecCC-CcCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence 348899998874 11 1244555554 6778776432 33333 45799999998666 56777778899999
Q ss_pred EEEE
Q 041159 257 MVQV 260 (356)
Q Consensus 257 viEi 260 (356)
||-+
T Consensus 233 VIDv 236 (297)
T PRK14168 233 VIDV 236 (297)
T ss_pred EEec
Confidence 9975
No 81
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.49 E-value=1.1e+02 Score=28.70 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCC
Q 041159 221 MSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLG 264 (356)
Q Consensus 221 ~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~ 264 (356)
..++.|.+.++++||++||+-. |..|+-- --|.-+|-|++..
T Consensus 186 ~~~l~e~~~li~~~~l~I~~Ds-g~~HlA~-a~~~p~i~l~g~~ 227 (279)
T cd03789 186 KTSLRELAALLARADLVVTNDS-GPMHLAA-ALGTPTVALFGPT 227 (279)
T ss_pred CCCHHHHHHHHHhCCEEEeeCC-HHHHHHH-HcCCCEEEEECCC
Confidence 4789999999999999999965 4444442 3366777777654
No 82
>PRK03094 hypothetical protein; Provisional
Probab=31.88 E-value=72 Score=24.98 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHcCCEEEEEcC
Q 041159 198 NEDEMVVMIEELGFQVVVTRP 218 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~ 218 (356)
+...|.+.|++.||+|+-++.
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCc
Confidence 456788999999999988754
No 83
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=31.44 E-value=53 Score=25.67 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhccc
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFL 251 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~ 251 (356)
+..+|.++|++.||+|+-++... -+.++|.+| +-|-. +|++=+
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~---------~~~~~daiV-vtG~~-~n~mg~ 51 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQ---------DLQNVDAIV-VTGQD-TNMMGI 51 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCcc---------ccCCcCEEE-EECCC-cccccc
Confidence 45678999999999998876431 356788877 44533 454433
No 84
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=31.16 E-value=2.1e+02 Score=26.89 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=37.6
Q ss_pred HhcCCEEEEeehhhhhhh----c----ccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 231 VNSCSVLVGAHGAGLTTE----L----FLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 231 ~~~advlvg~HGAgLtn~----l----F~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
..++|+||..-++|+... . +++++..++++.-.. ..+.+...|+..|.+++
T Consensus 176 ~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p----~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 176 LHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP----GETPFLAEAKSLGTKTI 234 (270)
T ss_pred ccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC----CCCHHHHHHHHCCCeee
Confidence 357999999999886432 1 368899999986322 23468888999998876
No 85
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=31.04 E-value=56 Score=29.95 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCCCcCCCCCchHH--HHhhcCCeEEEEE
Q 041159 224 LNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWGSTYYFGV--PAREMGVQYLEYK 288 (356)
Q Consensus 224 ~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~~~~~~~~~y~~--lA~~~gl~Y~~y~ 288 (356)
+++.++.-.++||+|++---|=||++|.++ .-+++ .+ ..-.++.. .|+..|+.+.-|.
T Consensus 104 i~~~~~~~~d~dvviaP~~gGGTn~L~~r~--~~~~~---~y--~g~SF~~Hl~~Ark~G~~~~~~d 163 (210)
T COG1920 104 IERALSAAKDADVVIAPGRGGGTNVLFARK--SAFRP---RY--GGVSFLRHLEEARKRGLVVLTYD 163 (210)
T ss_pred HHHHHHhcCCCcEEEecCCCCceEEEEEec--ccccc---cc--cCccHHHHHHHHHHcCCEEEEec
Confidence 567777888899999999999999999998 33322 11 12234444 5899999998773
No 86
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=30.96 E-value=80 Score=32.30 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=62.5
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehh---hhhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGA---GLTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGA---gLtn~lF~~pgs~vi 258 (356)
+.++-+|.=. ...-|.+|+.+.|+++|++++..-+. ..++ |+++-+.+|..-|.+.+. .++..|==+=|.-.+
T Consensus 191 ~~~VNiig~~--~~~~d~~el~~lL~~~Gl~v~~~~~~-~~t~-eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~ 266 (443)
T TIGR01862 191 EYDVNIIGEY--NIGGDAWVMRIYLEEMGIQVVATFTG-DGTY-DEIRLMHKAKLNLVHCARSANYIANELEERYGIPWM 266 (443)
T ss_pred CCeEEEEccC--cCcccHHHHHHHHHHcCCeEEEEECC-CCCH-HHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 4466676522 23457889999999999999754343 2455 555678888877655442 234444333467777
Q ss_pred EEecCCCcCCCCCchHHHHhhcCC
Q 041159 259 QVVPLGLEWGSTYYFGVPAREMGV 282 (356)
Q Consensus 259 Ei~P~~~~~~~~~~y~~lA~~~gl 282 (356)
.+-|.|++- ...++..+|+.+|+
T Consensus 267 ~~~p~G~~~-t~~~l~~la~~~gi 289 (443)
T TIGR01862 267 KIDFFGFTY-TAESLRAIAAFFGI 289 (443)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCC
Confidence 777877542 34588999998884
No 87
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.69 E-value=3.7e+02 Score=26.20 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=47.6
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEE
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEEL----GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVM 257 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~----gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~v 257 (356)
-++++|.|.+. + -.-+..+|.+. +..|.++... +.++.+ ..++|||+|+.-| +++-..=|.+||++|
T Consensus 158 K~vvViGrS~i---V-GkPla~lL~~~~~~~~aTVtvchs~-T~nl~~---~~~~ADIvIsAvGkp~~i~~~~vk~gavV 229 (293)
T PRK14185 158 KKCVVLGRSNI---V-GKPMAQLMMQKAYPGDCTVTVCHSR-SKNLKK---ECLEADIIIAALGQPEFVKADMVKEGAVV 229 (293)
T ss_pred CEEEEECCCcc---c-hHHHHHHHHcCCCCCCCEEEEecCC-CCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCCEE
Confidence 38899998864 1 11345556554 6788876432 344444 5689999998877 456666678999999
Q ss_pred EEE
Q 041159 258 VQV 260 (356)
Q Consensus 258 iEi 260 (356)
|-+
T Consensus 230 IDv 232 (293)
T PRK14185 230 IDV 232 (293)
T ss_pred EEe
Confidence 975
No 88
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.53 E-value=1.7e+02 Score=23.03 Aligned_cols=45 Identities=7% Similarity=0.163 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHcCCEEEEE--cCCCCCCHHHHHHHHhcCCEEEEeeh
Q 041159 198 NEDEMVVMIEELGFQVVVT--RPNRMSNLNKFTEVVNSCSVLVGAHG 242 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~--~~~~~~~~~eq~~~~~~advlvg~HG 242 (356)
++.++.+.++++|++.+.. +......-...-+.+.+||+||-+-+
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~ 57 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTD 57 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeC
Confidence 4667888889999999887 22211121223457889999875533
No 89
>PRK13057 putative lipid kinase; Reviewed
Probab=30.22 E-value=2.7e+02 Score=26.27 Aligned_cols=66 Identities=17% Similarity=0.359 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH-HhcCCEEEEeehhhhhhhc---ccCCCcEEEEEecCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEV-VNSCSVLVGAHGAGLTTEL---FLPAGAVMVQVVPLG 264 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~-~~~advlvg~HGAgLtn~l---F~~pgs~viEi~P~~ 264 (356)
..+++.+.|++.|+++.....+......+.++. ..+.|.||.+=|=|--|.+ .+..+ .-+=++|.|
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~~~-~~lgiiP~G 83 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVETG-LPLGILPLG 83 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhcCC-CcEEEECCC
Confidence 467888999999999776554322334444433 4667999999888865544 13333 336788998
No 90
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.97 E-value=91 Score=31.66 Aligned_cols=97 Identities=12% Similarity=0.007 Sum_probs=62.7
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee--hh-hhhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH--GA-GLTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H--GA-gLtn~lF~~pgs~vi 258 (356)
...+-+|.= ...--|..|+.+.|++.|.++...-+. ..+++| ++-+.+|..-|.+. +. .++..|=-+=|.-.+
T Consensus 172 ~~~VNiiG~--~~~~~d~~el~~lL~~~Gi~v~~~~~~-~~t~ee-i~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIGD--YNIGGDAWASRILLEEMGLRVVAQWSG-DGTLNE-MENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEec--CCCCccHHHHHHHHHHcCCeEEEEeCC-CCCHHH-HHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEE
Confidence 446666652 122347788999999999999853333 355555 56677777766653 33 244545334567777
Q ss_pred EEecCCCcCCCCCchHHHHhhcCCe
Q 041159 259 QVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 259 Ei~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
+..|.|++ ....++..+|+.+|..
T Consensus 248 ~~~p~Gi~-~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 248 EYNFFGPT-KIAESLRKIAAYFDDE 271 (421)
T ss_pred ecccCCHH-HHHHHHHHHHHHhCch
Confidence 77788854 2346889999988864
No 91
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=29.75 E-value=1.2e+02 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=14.8
Q ss_pred HHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 041159 202 MVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLV 238 (356)
Q Consensus 202 v~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlv 238 (356)
+.++++++|+++..++... .+-.+..+.+.+||+|.
T Consensus 5 ~~~~f~~~g~~v~~l~~~~-~~~~~~~~~i~~ad~I~ 40 (154)
T PF03575_consen 5 FRKAFRKLGFEVDQLDLSD-RNDADILEAIREADAIF 40 (154)
T ss_dssp HHHHHHHCT-EEEECCCTS-CGHHHHHHHHHHSSEEE
T ss_pred HHHHHHHCCCEEEEEeccC-CChHHHHHHHHhCCEEE
Confidence 3344444555544443321 23334444444444443
No 92
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.21 E-value=13 Score=38.31 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCCCcCCCCCchHHHH--hhcCCeEEEEEecC
Q 041159 221 MSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWGSTYYFGVPA--REMGVQYLEYKTEP 291 (356)
Q Consensus 221 ~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~~~~~~~~~y~~lA--~~~gl~Y~~y~~~~ 291 (356)
.+.+.|-++.+++.. +.+|+++..--.|.+.+..+++-+|++.+.....+|+.++ -.+.+-+.+|....
T Consensus 218 ~~kf~Dvv~~lSn~~--~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i 288 (475)
T KOG4698|consen 218 DMKFGDVVRQLSNYP--VVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRI 288 (475)
T ss_pred hhhHHHHHHhcCCCc--eEEecCCceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccc
Confidence 488999999999999 7889999999999999999999999998776677775433 44555566665543
No 93
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=28.72 E-value=1.2e+02 Score=31.24 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=45.3
Q ss_pred CCcEEEEEEcCCC------c--cccCHHHH--------HHHHHHc-CCEEEEEcC-CCCCCHHHHHHHHh--cCCEEEEe
Q 041159 181 EKPVLIFISRGNS------R--KFLNEDEM--------VVMIEEL-GFQVVVTRP-NRMSNLNKFTEVVN--SCSVLVGA 240 (356)
Q Consensus 181 ~~pr~~~i~R~~~------R--~i~N~~ev--------~~~l~~~-gf~v~~~~~-~~~~~~~eq~~~~~--~advlvg~ 240 (356)
.++.+++|+=... . .=+-|.++ .+.|++. |++|+.... +...++.|-.++.+ +||++|+.
T Consensus 189 ~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFISI 268 (445)
T PRK10431 189 GDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSI 268 (445)
T ss_pred CCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 4566788886542 2 22445543 3344444 799876543 33588999988887 89999999
Q ss_pred ehhhhhh
Q 041159 241 HGAGLTT 247 (356)
Q Consensus 241 HGAgLtn 247 (356)
|--+..+
T Consensus 269 HaNa~~~ 275 (445)
T PRK10431 269 HADAAPN 275 (445)
T ss_pred ccCCCCC
Confidence 9888765
No 94
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=28.71 E-value=86 Score=31.85 Aligned_cols=94 Identities=21% Similarity=0.338 Sum_probs=58.2
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee--hhhhhhhcccCCCcEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH--GAGLTTELFLPAGAVMVQ 259 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H--GAgLtn~lF~~pgs~viE 259 (356)
+.++.++.--. .-+..|+.+.|++.|.+++.+-++ .++.| +..+..+..++..+ +...+..| -+-|.-.+.
T Consensus 166 ~~~VniiG~~~---~~d~~el~~lL~~~Gi~v~~~lp~--~~~~d-~~~~~~~~~~~~~~~~~~~~A~~L-~~~GiP~~~ 238 (427)
T PRK02842 166 HPSLVLVGSLA---DVVEDQLTLEFKKLGIGVVGFLPA--RRFTE-LPAIGPGTVVALAQPFLSDTARAL-RERGAKVLT 238 (427)
T ss_pred CCcEEEEEeCC---cchHHHHHHHHHHcCCeeEEEeCC--ccHHH-HhhcCcCcEEEEeCHHHHHHHHHH-HHcCCcccc
Confidence 34566666433 345678999999999998633343 34544 45554444544444 44555556 555766655
Q ss_pred E-ecCCCcCCCCCchHHHHhhcCCe
Q 041159 260 V-VPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 260 i-~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
. +|.|++- ...+++.+|+.+|+.
T Consensus 239 ~~~P~G~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 239 APFPLGPEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred CCCCcChHH-HHHHHHHHHHHhCcC
Confidence 5 7788542 345788999888864
No 95
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.55 E-value=2e+02 Score=24.28 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=27.9
Q ss_pred HHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEeehhh
Q 041159 202 MVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSV-LVGAHGAG 244 (356)
Q Consensus 202 v~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lvg~HGAg 244 (356)
+..+|+..||+|+.... ..|.++-++.....++ +||+-+.-
T Consensus 22 v~~~l~~~GfeVi~lg~--~~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 22 IATAYADLGFDVDVGPL--FQTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEcCch
Confidence 44677888999987654 3688888777766555 55554433
No 96
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=28.52 E-value=1.7e+02 Score=28.05 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=37.1
Q ss_pred HHHhcCCEEEEeehhhhhh-------hcccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 229 EVVNSCSVLVGAHGAGLTT-------ELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 229 ~~~~~advlvg~HGAgLtn-------~lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
+.+.++|+||..--+|+.. .-+++++..|++++-.. ..+.|-..|+..|.+..
T Consensus 188 ~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~~ 247 (284)
T PRK12549 188 AALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFP----LETELLRAARALGCRTL 247 (284)
T ss_pred hhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCC----CCCHHHHHHHHCCCeEe
Confidence 3567899998876666532 23467788888887332 24678888999998754
No 97
>PLN02204 diacylglycerol kinase
Probab=28.23 E-value=2.8e+02 Score=29.85 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHHhCCCccCcccccCCCcEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHH--
Q 041159 155 YSMVDFKRFLREAYSLKIKNVSEIQREKPVLIFISRGNS--RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEV-- 230 (356)
Q Consensus 155 ~~i~~F~~~l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~--R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~-- 230 (356)
.....|.+.|...+.... .+.+.-++|+.-... |...+.+++...+++.|+++.+...+..-...+.++.
T Consensus 139 ~~~~~w~~~l~~~l~~~~------~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~ 212 (601)
T PLN02204 139 QTCQSWVDRLNASLNKEV------GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASIS 212 (601)
T ss_pred HHHHHHHHHHHHHHhhcc------CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHh
Confidence 346677777777664221 122223455554332 4445566788899888887655443322223333221
Q ss_pred ---HhcCCEEEEeehhhhhhhcc
Q 041159 231 ---VNSCSVLVGAHGAGLTTELF 250 (356)
Q Consensus 231 ---~~~advlvg~HGAgLtn~lF 250 (356)
....|.||++=|-|+-|-+.
T Consensus 213 ~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 213 NKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred hhhccCCCEEEEEcCccHHHHHH
Confidence 46679999999988766443
No 98
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=28.19 E-value=87 Score=32.23 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=63.2
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee---hhhhhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH---GAGLTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H---GAgLtn~lF~~pgs~vi 258 (356)
+..|-+|. ..-.--|.+|+.+.|++.|++++..-+. ..+++| ++-+.+|+.-|.+. |..++..|=-+=|.-.+
T Consensus 199 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gl~v~~~~~g-~~s~~e-i~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~ 274 (457)
T TIGR01284 199 EYDVNLIG--EYNIQGDLWVLKKYFERMGIQVLSTFTG-NGCYDE-LRWMHRAKLNVVRCARSANYIANELEERYGIPRL 274 (457)
T ss_pred CCeEEEEc--cCCchhhHHHHHHHHHHcCCeEEEEECC-CCCHHH-HHhccccCEEEEEChHHHHHHHHHHHHHhCCCeE
Confidence 34566774 2122245678889999999999744343 355555 56677777755433 44456666555577788
Q ss_pred EEecCCCcCCCCCchHHHHhhcCCe
Q 041159 259 QVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 259 Ei~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.+-|+|++. ...+...+|+.+|+.
T Consensus 275 ~~~~~G~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 275 DIDFFGFEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred ecccCCHHH-HHHHHHHHHHHhCCc
Confidence 877887542 345889999999965
No 99
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=27.82 E-value=64 Score=32.87 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--EEEEeehhhhhhhcccCCCcEEEEEecCCCcCCCCCchHH
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCS--VLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWGSTYYFGV 275 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~ad--vlvg~HGAgLtn~lF~~pgs~viEi~P~~~~~~~~~~y~~ 275 (356)
|..|+...|++.|.++..+-+. .+++|- +-+.+|. ++++++. +.+-.++.+-|.-.++..|.|++. ...+.+.
T Consensus 178 d~~eik~lL~~~Gi~~~~~~~G--~~~~ei-~~a~~A~~~i~l~~~~-~~a~~l~~~~GvP~~~~~PiG~~~-Td~fL~~ 252 (422)
T TIGR02015 178 DAMVIGGVLQPIGVESGPTVPG--RDWREL-YAALDSSAVAVLHPFY-EATARLFEAAGVKIVGSAPVGANG-TGEWLER 252 (422)
T ss_pred cHHHHHHHHHHcCCCeEEecCC--CCHHHH-HhhhcCeEEEEeCccc-hHHHHHHHHcCCceeccCCCChHH-HHHHHHH
Confidence 6778899999999999766553 465554 5555554 4555443 356667777777777778999642 3457889
Q ss_pred HHhhcCCe
Q 041159 276 PAREMGVQ 283 (356)
Q Consensus 276 lA~~~gl~ 283 (356)
+|+..|..
T Consensus 253 la~~~G~~ 260 (422)
T TIGR02015 253 IGEALDLD 260 (422)
T ss_pred HHHHhCcC
Confidence 99988864
No 100
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.81 E-value=73 Score=32.27 Aligned_cols=100 Identities=11% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCC-----------------CCCCHHHHHHHHhcCCEEEEeeh-
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPN-----------------RMSNLNKFTEVVNSCSVLVGAHG- 242 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~-----------------~~~~~~eq~~~~~~advlvg~HG- 242 (356)
.+.++-+|.-... .--|.+|+.+.|+++|.+++.+-.. ...++ |+++-+.+|.+-|.++.
T Consensus 154 ~~~~VNlig~~~~-~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~-e~i~~~~~A~lniv~~~~ 231 (428)
T cd01965 154 KNGKVNLLPGFPL-TPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTL-EEIRDAGNAKATIALGEY 231 (428)
T ss_pred CCCeEEEECCCCC-CccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcH-HHHHHhccCcEEEEEChh
Confidence 3446666653221 1127899999999999999765321 12344 56677888888777776
Q ss_pred hhhhhhcccC--CCcEEEEEe-cCCCcCCCCCchHHHHhhcCCe
Q 041159 243 AGLTTELFLP--AGAVMVQVV-PLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 243 AgLtn~lF~~--pgs~viEi~-P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
+|..-.-+|. -|.-.+..- |.|++ ....+++.+|+.+|..
T Consensus 232 ~~~~~a~~L~e~~GiP~~~~~~p~G~~-~t~~~l~~l~~~~g~~ 274 (428)
T cd01965 232 SGRKAAKALEEKFGVPYILFPTPIGLK-ATDEFLRALSKLSGKP 274 (428)
T ss_pred hhHHHHHHHHHHHCCCeeecCCCcChH-HHHHHHHHHHHHHCCC
Confidence 6655555555 466667665 88854 2345788888888864
No 101
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.73 E-value=1e+02 Score=31.06 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=61.6
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hh--hhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AG--LTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-Ag--Ltn~lF~~pgs~vi 258 (356)
+.+|-+|. ....--|.+|+.+.|+++|.+++..-+. ..+++| ++-+.+|..-|.+.+ +| ++..|==+=|.-.+
T Consensus 162 ~~~VNliG--~~~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 162 DYTINYIG--DYNIQGDTEVLQKYFERMGIQVLSTFTG-NGTYDD-LRWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred CCcEEEEc--cCCCcccHHHHHHHHHHcCCeEEEEECC-CCCHHH-HHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 34566664 2233446678999999999999643343 356655 567888887655443 23 33433223366677
Q ss_pred EEecCCCcCCCCCchHHHHhhcCCe
Q 041159 259 QVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 259 Ei~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.+-|.|++. ...++..+|+.+|+.
T Consensus 238 ~~~~~G~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 238 DVDGFGFEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred EeccCCHHH-HHHHHHHHHHHhCcc
Confidence 776777542 345889999999865
No 102
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=27.58 E-value=1.5e+02 Score=31.07 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=61.6
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEcC-CCCCCHHH-HH-----------HHHhcCCEEEEeehhhhhhhcccCCCcEEEE
Q 041159 193 SRKFLNEDEMVVMIEELGFQVVVTRP-NRMSNLNK-FT-----------EVVNSCSVLVGAHGAGLTTELFLPAGAVMVQ 259 (356)
Q Consensus 193 ~R~i~N~~ev~~~l~~~gf~v~~~~~-~~~~~~~e-q~-----------~~~~~advlvg~HGAgLtn~lF~~pgs~viE 259 (356)
.||+.=-.+.++.|.+.||+|.+-+. .....|.+ .+ +++ +||+|+.+..-.....=+|++|.+++-
T Consensus 13 E~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~P~~~e~~~l~~g~~li~ 91 (509)
T PRK09424 13 ETRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNAPSDDEIALLREGATLVS 91 (509)
T ss_pred CeEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCCCCHHHHHhcCCCCEEEE
Confidence 35555556667777888999876432 12233321 11 345 699999999998888889999999998
Q ss_pred EecCCCcCCCCCchHHHHhhcCCeEEEEEecC
Q 041159 260 VVPLGLEWGSTYYFGVPAREMGVQYLEYKTEP 291 (356)
Q Consensus 260 i~P~~~~~~~~~~y~~lA~~~gl~Y~~y~~~~ 291 (356)
++-+. .....-+.....|+.-++|..-+
T Consensus 92 ~l~p~----~~~~l~~~l~~~~it~ia~e~vp 119 (509)
T PRK09424 92 FIWPA----QNPELLEKLAARGVTVLAMDAVP 119 (509)
T ss_pred EeCcc----cCHHHHHHHHHcCCEEEEeeccc
Confidence 77443 12233344456678888887644
No 103
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=27.11 E-value=2.1e+02 Score=30.13 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=60.6
Q ss_pred CccccCHHHHHHHHHHcCCEEEEEcC-CCCCCHHH-HH----------HHHhcCCEEEEeehhhhhhhcccCCCcEEEEE
Q 041159 193 SRKFLNEDEMVVMIEELGFQVVVTRP-NRMSNLNK-FT----------EVVNSCSVLVGAHGAGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 193 ~R~i~N~~ev~~~l~~~gf~v~~~~~-~~~~~~~e-q~----------~~~~~advlvg~HGAgLtn~lF~~pgs~viEi 260 (356)
.||+-=-.+.++.|.+.||+|.+-+. .....|.+ .+ ..+.+||+|+.+.--...-.=+|++|.+++-+
T Consensus 12 E~RVAltP~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~P~~~e~~~l~~g~tli~~ 91 (511)
T TIGR00561 12 ECRVAATPKTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNAPSDAEIAELPAGKALVSF 91 (511)
T ss_pred CeeeccCHHHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCCCCHHHHHhcCCCCEEEEE
Confidence 36665556677777789999876433 12233422 12 12346899999988877778889999999987
Q ss_pred ecCCCcCCCCCchHHHHhhcCCeEEEEEe
Q 041159 261 VPLGLEWGSTYYFGVPAREMGVQYLEYKT 289 (356)
Q Consensus 261 ~P~~~~~~~~~~y~~lA~~~gl~Y~~y~~ 289 (356)
+-+. .....-+.....|+..++|..
T Consensus 92 l~p~----~n~~ll~~l~~k~it~ia~E~ 116 (511)
T TIGR00561 92 IWPA----QNPELMEKLAAKNITVLAMDA 116 (511)
T ss_pred cCcc----CCHHHHHHHHHcCCEEEEeec
Confidence 6443 122333444566788888874
No 104
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=26.47 E-value=51 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=36.8
Q ss_pred HHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCC-cEEEEEecCC
Q 041159 201 EMVVMIEEL-GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAG-AVMVQVVPLG 264 (356)
Q Consensus 201 ev~~~l~~~-gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pg-s~viEi~P~~ 264 (356)
++.+.|++. .-+.+.......+++.+..+.+..-+=+||+| .|.||. ..++||+|..
T Consensus 95 ~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~ 153 (180)
T PF02737_consen 95 ELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGP 153 (180)
T ss_dssp HHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-T
T ss_pred HHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCC
Confidence 455666653 44555544444689999999998888899999 455775 7999999886
No 105
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=26.02 E-value=1.1e+02 Score=25.57 Aligned_cols=52 Identities=15% Similarity=0.353 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH-hcCCEEEEeehhhhhhh
Q 041159 197 LNEDEMVVMIEELGFQVVVTR--PNRMSNLNKFTEVV-NSCSVLVGAHGAGLTTE 248 (356)
Q Consensus 197 ~N~~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~-~~advlvg~HGAgLtn~ 248 (356)
.|-.-+.+.++++|+++.... +++.-.+.++++.. .++|++|.-=|.|.+--
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~~ 73 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGRR 73 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCC
Confidence 355567788999999886542 23234566777544 56999999988887643
No 106
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=25.62 E-value=1e+02 Score=28.65 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhc------CCE---EEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNS------CSV---LVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~------adv---lvg~HGAgLtn~lF~~pg 254 (356)
+.+.|.+.++++||+|.+...-....+.+.++-+.. .|. ++.-||- .|.++...|
T Consensus 31 D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~--~~~l~~~D~ 94 (241)
T smart00115 31 DAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE--EGGIYGTDH 94 (241)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC--CCeEEEecC
Confidence 456778899999999987543212334555544443 333 4566774 477776665
No 107
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=25.60 E-value=2.1e+02 Score=30.05 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC----------C--CH-HHHHHHH----hcCCEEEEeehh-------hhhhhcc--cCC
Q 041159 200 DEMVVMIEELGFQVVVTRPNRM----------S--NL-NKFTEVV----NSCSVLVGAHGA-------GLTTELF--LPA 253 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~~----------~--~~-~eq~~~~----~~advlvg~HGA-------gLtn~lF--~~p 253 (356)
++-.+.++++|.+...++..+. + .+ +.|.+++ ..+||+|...|. .++...+ |+|
T Consensus 198 ~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkp 277 (509)
T PRK09424 198 PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKP 277 (509)
T ss_pred HHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCC
Confidence 3456677778988554443210 1 12 2233443 469999999986 2245554 899
Q ss_pred CcEEEEEe
Q 041159 254 GAVMVQVV 261 (356)
Q Consensus 254 gs~viEi~ 261 (356)
|++++.+-
T Consensus 278 GgvIVdvg 285 (509)
T PRK09424 278 GSVIVDLA 285 (509)
T ss_pred CCEEEEEc
Confidence 99999875
No 108
>PRK07589 ornithine cyclodeaminase; Validated
Probab=25.10 E-value=1.5e+02 Score=29.47 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=43.7
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh----hhhhcccCCCcEEEE
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG----LTTELFLPAGAVMVQ 259 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg----Ltn~lF~~pgs~viE 259 (356)
++.+.+|. ..+.+++.+.+++.|+++.+.+ +.+ +.+.+||||+..-.+. +-..=|++||+.|.=
T Consensus 156 ~V~v~~r~----~~~a~~~~~~~~~~~~~v~~~~-----~~~---~av~~ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~a 223 (346)
T PRK07589 156 EIRLYDID----PAATAKLARNLAGPGLRIVACR-----SVA---EAVEGADIITTVTADKTNATILTDDMVEPGMHINA 223 (346)
T ss_pred EEEEEeCC----HHHHHHHHHHHHhcCCcEEEeC-----CHH---HHHhcCCEEEEecCCCCCCceecHHHcCCCcEEEe
Confidence 45556544 4455667777776677776643 333 4578999999998753 233457899998775
Q ss_pred Ee
Q 041159 260 VV 261 (356)
Q Consensus 260 i~ 261 (356)
|=
T Consensus 224 IG 225 (346)
T PRK07589 224 VG 225 (346)
T ss_pred cC
Confidence 53
No 109
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.00 E-value=1.6e+02 Score=26.67 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=40.8
Q ss_pred CCCcEEEEEEcCCCccccCHHHHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh
Q 041159 180 REKPVLIFISRGNSRKFLNEDEMVVMIEEL-GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG 244 (356)
Q Consensus 180 ~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~-gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg 244 (356)
..+++++||.-...-.---...+.+++++. |+++..+... +-++..+.+.+||+|+=+=|.-
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~---~~~~~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLF---DTEDPLDALLEADVIYVGGGNT 91 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEecc---CcccHHHHHhcCCEEEECCchH
Confidence 356799999877651111233456777889 9998876542 2344467888999988665643
No 110
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.91 E-value=3.5e+02 Score=21.40 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEEEEee
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVN--SCSVLVGAH 241 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~--~advlvg~H 241 (356)
|+++..+....--+...-+...|++.|++|..++.. .+..+-.+.+. +.|+ ||+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~--~~~~~l~~~~~~~~pd~-V~iS 58 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN--VPPEELVEALRAERPDV-VGIS 58 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS--B-HHHHHHHHHHTTCSE-EEEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC--CCHHHHHHHHhcCCCcE-EEEE
Confidence 456666666555666677888999999999888764 34444444332 5566 4443
No 111
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=24.65 E-value=1.2e+02 Score=28.84 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHH---HHHHhcCCEEEEeeh
Q 041159 201 EMVVMIEELGFQVVVTRPNRMSNLNKF---TEVVNSCSVLVGAHG 242 (356)
Q Consensus 201 ev~~~l~~~gf~v~~~~~~~~~~~~eq---~~~~~~advlvg~HG 242 (356)
+.++.|++.|.+++++-. +..+.++ ++.+...|+|||-|-
T Consensus 173 ~~v~~lr~~~~D~II~l~--H~G~~~d~~la~~~~giD~IiggH~ 215 (281)
T cd07409 173 KEADKLKAQGVNKIIALS--HSGYEVDKEIARKVPGVDVIVGGHS 215 (281)
T ss_pred HHHHHHHhcCCCEEEEEe--ccCchhHHHHHHcCCCCcEEEeCCc
Confidence 345566666888876532 2344433 344567999999994
No 112
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=24.57 E-value=3.4e+02 Score=25.76 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=49.8
Q ss_pred CcEEEEEEcCC--Ccccc--CHHHHHHHHHHcCCEEEEE-cC-C------------------CCCCHHHHHHHHhcCCEE
Q 041159 182 KPVLIFISRGN--SRKFL--NEDEMVVMIEELGFQVVVT-RP-N------------------RMSNLNKFTEVVNSCSVL 237 (356)
Q Consensus 182 ~pr~~~i~R~~--~R~i~--N~~ev~~~l~~~gf~v~~~-~~-~------------------~~~~~~eq~~~~~~advl 237 (356)
+|.+++.--.+ .|++- +-.++++.|.+.|+.++.+ .. + ..+++.|-+++++.||++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEE
Confidence 44555443322 26665 4557887776667777654 21 0 136899999999999999
Q ss_pred EEeehhhhhhhcccCCCcEEEEEecC
Q 041159 238 VGAHGAGLTTELFLPAGAVMVQVVPL 263 (356)
Q Consensus 238 vg~HGAgLtn~lF~~pgs~viEi~P~ 263 (356)
||.=. |..|+--+ -|+-+|-|+..
T Consensus 259 I~~DS-gp~HlAaa-~g~P~i~lfg~ 282 (319)
T TIGR02193 259 VGVDT-GLTHLAAA-LDKPTVTLYGA 282 (319)
T ss_pred EeCCC-hHHHHHHH-cCCCEEEEECC
Confidence 99754 44444432 26666777744
No 113
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.85 E-value=1.8e+02 Score=26.06 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=36.9
Q ss_pred CCCcEEEEEEcCCC---ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH
Q 041159 180 REKPVLIFISRGNS---RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV 231 (356)
Q Consensus 180 ~~~pr~~~i~R~~~---R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~ 231 (356)
...|.++++.-+.. +|.+++++..++++++|..-..-+..-...+++-++++
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence 45688889887764 99999999999999998654333222235666666554
No 114
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=23.62 E-value=1.2e+02 Score=26.93 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=44.7
Q ss_pred EEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecC
Q 041159 186 IFISRGNS--RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPL 263 (356)
Q Consensus 186 ~~i~R~~~--R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~ 263 (356)
.+++|.|. +-.-+..++++.|++.|.++.+.+-...-..+.|+ +..-++- .+-.....+..--.-+||.|-
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~--L~~l~i~-----~~~~~~~~~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWAREL--LKLLEID-----DADGDGVPLIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHH--HHHTT-C---------------CCECEEEESSS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHH--HHhcCCC-----ccccccccchhhcchhheecC
Confidence 78888887 88888999999999999999887632111123222 2222222 222344445555555888885
Q ss_pred CCcCCCCCchHHHHhhcCCeEEEE
Q 041159 264 GLEWGSTYYFGVPAREMGVQYLEY 287 (356)
Q Consensus 264 ~~~~~~~~~y~~lA~~~gl~Y~~y 287 (356)
. -..+|.++.+..|+.|-+.
T Consensus 108 s----K~~Hf~~i~~~tgI~y~eM 127 (169)
T PF12689_consen 108 S----KTTHFRRIHRKTGIPYEEM 127 (169)
T ss_dssp -----HHHHHHHHHHHH---GGGE
T ss_pred c----hHHHHHHHHHhcCCChhHE
Confidence 4 3458999999999998643
No 115
>PRK05568 flavodoxin; Provisional
Probab=23.58 E-value=2e+02 Score=23.80 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=33.0
Q ss_pred cEEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 041159 183 PVLIFISRGNS-RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLV 238 (356)
Q Consensus 183 pr~~~i~R~~~-R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlv 238 (356)
.-++|.|..++ +++.+ .+.+.+++.|.++.+.+..+ .... .+.++|.||
T Consensus 4 ~~IvY~S~~GnT~~~a~--~i~~~~~~~g~~v~~~~~~~-~~~~----~~~~~d~ii 53 (142)
T PRK05568 4 INIIYWSGTGNTEAMAN--LIAEGAKENGAEVKLLNVSE-ASVD----DVKGADVVA 53 (142)
T ss_pred EEEEEECCCchHHHHHH--HHHHHHHHCCCeEEEEECCC-CCHH----HHHhCCEEE
Confidence 46888998886 66653 46666777899988877653 4433 356777765
No 116
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=23.36 E-value=3.2e+02 Score=25.80 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHhcCCEEEEeehhhhhh--------hcccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 229 EVVNSCSVLVGAHGAGLTT--------ELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 229 ~~~~~advlvg~HGAgLtn--------~lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
..+..+|+||..-.+|+.. .-++++++.|++++-.. ..+.|-..|+..|++..
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP----LPTPFLAWAKAQGARTI 241 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC----CCCHHHHHHHHCcCeec
Confidence 4567899999999999843 12467889999987432 24678888999998764
No 117
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=23.20 E-value=2e+02 Score=25.24 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe
Q 041159 199 EDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 199 ~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~ 240 (356)
..++.+.++++|++|.++.. -|+.-++-.=..-+.+||+
T Consensus 75 Ig~l~~lae~~g~~v~i~~G---gt~ar~~ik~~~p~~iigV 113 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATG---GTLARKIIKEYRPKAIIGV 113 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcC---hHHHHHHHHHhCCCEEEEE
Confidence 45899999999999888754 4555554444455555554
No 118
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=22.77 E-value=2.5e+02 Score=27.11 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=56.1
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhh--------cccCCC
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTE--------LFLPAG 254 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~--------lF~~pg 254 (356)
.+++++.|+..| -+++.+.+.+.|..+...+... ..-.+ .+|++|-.-..||..- --++++
T Consensus 151 ~~i~V~NRt~~r----a~~La~~~~~~~~~~~~~~~~~-~~~~~------~~dliINaTp~Gm~~~~~~~~~~~~~l~~~ 219 (283)
T COG0169 151 KRITVVNRTRER----AEELADLFGELGAAVEAAALAD-LEGLE------EADLLINATPVGMAGPEGDSPVPAELLPKG 219 (283)
T ss_pred CEEEEEeCCHHH----HHHHHHHhhhcccccccccccc-ccccc------ccCEEEECCCCCCCCCCCCCCCcHHhcCcC
Confidence 578888766543 5667777776664333322211 11111 8999998888777763 235788
Q ss_pred cEEEEEecCCCcCCCCCchHHHHhhcCCeE
Q 041159 255 AVMVQVVPLGLEWGSTYYFGVPAREMGVQY 284 (356)
Q Consensus 255 s~viEi~P~~~~~~~~~~y~~lA~~~gl~Y 284 (356)
+.+.+++=.. ..+.|-..|+..|.+.
T Consensus 220 ~~v~D~vY~P----~~TplL~~A~~~G~~~ 245 (283)
T COG0169 220 AIVYDVVYNP----LETPLLREARAQGAKT 245 (283)
T ss_pred CEEEEeccCC----CCCHHHHHHHHcCCeE
Confidence 8999987332 2568889999999873
No 119
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=22.65 E-value=1.2e+02 Score=28.25 Aligned_cols=55 Identities=15% Similarity=0.310 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh-----cCC---EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVN-----SCS---VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~-----~ad---vlvg~HGAgLtn~lF~~pg 254 (356)
..+.+.+.++++||+|.+...-....+.+.++-+. ++| +++.-||-. |.++...+
T Consensus 33 D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~--~~l~~~D~ 95 (243)
T cd00032 33 DAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEE--GGIYGTDG 95 (243)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCC--CEEEEecC
Confidence 34567788999999998764321233444444444 344 356668865 76765553
No 120
>PRK09989 hypothetical protein; Provisional
Probab=22.54 E-value=1.9e+02 Score=26.67 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhh
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLT 246 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLt 246 (356)
..++.++.+++.||+-+.+-.....+.++-.+++.+..+-|..|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~ 64 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPG 64 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCC
Confidence 5678889999999987665332247888888899999998888877654
No 121
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=22.50 E-value=1e+02 Score=24.64 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEec
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVP 262 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P 262 (356)
+.+|+.++++++|++.+ +|++..+|=. -|..+|-+.|++..
T Consensus 30 ~~~EI~~a~~~Lgl~~~-~E~~K~yPr~-----------------------~~~~~GRV~V~~~~ 70 (95)
T PF01922_consen 30 TLEEIADACKKLGLPCV-VEPDKRYPRD-----------------------WWENPGRVRVQLKN 70 (95)
T ss_dssp -HHHHHHHHHHTTSEEE-EETTECTTCG-----------------------STSCTTEEEEE-CS
T ss_pred CHHHHHHHHHHcCCCEE-EccccCcChh-----------------------hcccCceEEEEeCC
Confidence 56799999999999988 5655434422 57778888777653
No 122
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=22.49 E-value=1.2e+02 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHhcCCEEEEeehhh----hhhhcccCCCcEEEEEecC
Q 041159 229 EVVNSCSVLVGAHGAG----LTTELFLPAGAVMVQVVPL 263 (356)
Q Consensus 229 ~~~~~advlvg~HGAg----Ltn~lF~~pgs~viEi~P~ 263 (356)
+.+..+|++|..-|.- .-++--|++|+.|.-+-..
T Consensus 74 ~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 74 EALRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp HHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred HHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 3578999999999963 3456669999998765433
No 123
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=22.47 E-value=1.8e+02 Score=29.30 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=42.5
Q ss_pred EEEEEEcCCCccccCHH-HHHHHHHHcCCEEEEEcCCC-----CCCHHHHHHHHhcCCEEE--Eeehh-------hhhh-
Q 041159 184 VLIFISRGNSRKFLNED-EMVVMIEELGFQVVVTRPNR-----MSNLNKFTEVVNSCSVLV--GAHGA-------GLTT- 247 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~-ev~~~l~~~gf~v~~~~~~~-----~~~~~eq~~~~~~advlv--g~HGA-------gLtn- 247 (356)
++.+|.=. |.. .+.+.|+.+|++|...++.. ...+.+.-+++.+||||+ .+.-. +|-|
T Consensus 118 tvGIIG~G------~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~ 191 (378)
T PRK15438 118 TVGIVGVG------NVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE 191 (378)
T ss_pred EEEEECcC------HHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH
Confidence 56666532 232 46788889999999877521 112333446788999998 33211 2222
Q ss_pred --hcccCCCcEEEEE
Q 041159 248 --ELFLPAGAVMVQV 260 (356)
Q Consensus 248 --~lF~~pgs~viEi 260 (356)
+-=|+||+.+|-.
T Consensus 192 ~~l~~mk~gailIN~ 206 (378)
T PRK15438 192 KLIRSLKPGAILINA 206 (378)
T ss_pred HHHhcCCCCcEEEEC
Confidence 2237899988844
No 124
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=22.31 E-value=1e+02 Score=31.72 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=63.2
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh---hhhhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG---AGLTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG---AgLtn~lF~~pgs~vi 258 (356)
+..|-+|. +....-|..|+.+.|+++|.+++..-+. ..+++| ++-+.+|..-|.+.+ ..++..|--+=|.-.+
T Consensus 201 ~~~VNiiG--~~~~~gd~~el~~lL~~~Gi~v~~~~~g-~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~ 276 (461)
T TIGR01860 201 EYTINVIG--DYNIQGDTQVLQKYWDKMGIQVIAHFTG-NGTYDD-LRCMHRAQLNVVNCARSAGYIANELKKRYGIPRL 276 (461)
T ss_pred CCcEEEEC--CCCCcccHHHHHHHHHHcCCcEEEEeCC-CCCHHH-HHhcccCcEEEEECchHHHHHHHHHHHHhCCCee
Confidence 34566774 2233456789999999999999753333 356665 566788887554432 2244545445577777
Q ss_pred EEecCCCcCCCCCchHHHHhhcCCe
Q 041159 259 QVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 259 Ei~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
++-|.|++- ...+.+.+|+.+|+.
T Consensus 277 ~~~p~Gi~~-T~~~L~~la~~~g~~ 300 (461)
T TIGR01860 277 DVDTWGFNY-MAEALRKIGAFFGIE 300 (461)
T ss_pred cCCcCCHHH-HHHHHHHHHHHhCCc
Confidence 877888542 345789999988864
No 125
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=22.30 E-value=1.4e+02 Score=30.61 Aligned_cols=96 Identities=15% Similarity=0.038 Sum_probs=62.4
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-h--hhhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-A--GLTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-A--gLtn~lF~~pgs~vi 258 (356)
+..+-+|.-.. ..-+..|+.++|++.|.+++..-+. ..++ |+++-+.+|.+-|.+.+ + .++..|==+=|.-.+
T Consensus 197 ~~~VNiiG~~~--~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~-eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~ 272 (456)
T TIGR01283 197 VHDINLIGEFN--VAGEFWHVKPLLEKLGIRVLATITG-DSRY-AEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYF 272 (456)
T ss_pred CCcEEEEcCCC--CcccHHHHHHHHHHcCCeEEEEeCC-CCcH-HHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEE
Confidence 44677776332 2336679999999999999864444 2455 55677888888776533 2 344444334477677
Q ss_pred EEecCCCcCCCCCchHHHHhhcCC
Q 041159 259 QVVPLGLEWGSTYYFGVPAREMGV 282 (356)
Q Consensus 259 Ei~P~~~~~~~~~~y~~lA~~~gl 282 (356)
+..|+|++. ...++..+|+.+|.
T Consensus 273 ~~~~~G~~~-T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 273 EGSFYGIED-TSKALRDIADLFGD 295 (456)
T ss_pred ecCCCcHHH-HHHHHHHHHHHhCC
Confidence 766777542 24578889988884
No 126
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.24 E-value=1.5e+02 Score=24.59 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHH-HHhcCCEEEEeehhhhhhh
Q 041159 197 LNEDEMVVMIEELGFQVVVTR--PNRMSNLNKFTE-VVNSCSVLVGAHGAGLTTE 248 (356)
Q Consensus 197 ~N~~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~-~~~~advlvg~HGAgLtn~ 248 (356)
.|..-+.+.|++.|+++.... +++.-.+.+.++ +..++|+||..=|+|.+.-
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~ 72 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPD 72 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCC
Confidence 355667788999999875321 332244566664 3467999999988775543
No 127
>PRK06823 ornithine cyclodeaminase; Validated
Probab=22.07 E-value=1.2e+02 Score=29.51 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=42.8
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhh--hhhcccCCCcEEEEEe
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGL--TTELFLPAGAVMVQVV 261 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgL--tn~lF~~pgs~viEi~ 261 (356)
++.+.+|.. -+.+++.+.+++.|+++...+ +.+ +.+.+||||+..-+|.= -..=|++||+.|+-|=
T Consensus 155 ~v~v~~r~~----~~a~~~~~~~~~~~~~v~~~~-----~~~---~av~~ADIV~taT~s~~P~~~~~~l~~G~hi~~iG 222 (315)
T PRK06823 155 QLWVWGRSE----TALEEYRQYAQALGFAVNTTL-----DAA---EVAHAANLIVTTTPSREPLLQAEDIQPGTHITAVG 222 (315)
T ss_pred EEEEECCCH----HHHHHHHHHHHhcCCcEEEEC-----CHH---HHhcCCCEEEEecCCCCceeCHHHcCCCcEEEecC
Confidence 566666553 344556666666688876542 222 45799999999887652 1223789999987553
No 128
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=21.98 E-value=3.7e+02 Score=24.13 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=44.5
Q ss_pred CCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEeehh
Q 041159 180 REKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSV-LVGAHGA 243 (356)
Q Consensus 180 ~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lvg~HGA 243 (356)
+.++++++..=.+...=+...=+..+++..||+|+.+-. +.|.++.++.+...+. +||+-..
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~--~vp~e~~v~~~~~~~pd~v~lS~~ 144 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR--DVPIDTVVEKVKKEKPLMLTGSAL 144 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEccc
Confidence 356788887766665555555566788889999998755 4899999998876655 5555443
No 129
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.94 E-value=1.1e+02 Score=25.73 Aligned_cols=70 Identities=17% Similarity=0.427 Sum_probs=40.1
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHc-CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhh--hcccCCC----cE
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEEL-GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTT--ELFLPAG----AV 256 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~-gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn--~lF~~pg----s~ 256 (356)
++.+++|+. +...+.++++ +..+... ++.|..+...++|++|..-++|+.. --.+.++ ..
T Consensus 38 ~i~i~nRt~-------~ra~~l~~~~~~~~~~~~------~~~~~~~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~ 104 (135)
T PF01488_consen 38 EITIVNRTP-------ERAEALAEEFGGVNIEAI------PLEDLEEALQEADIVINATPSGMPIITEEMLKKASKKLRL 104 (135)
T ss_dssp EEEEEESSH-------HHHHHHHHHHTGCSEEEE------EGGGHCHHHHTESEEEE-SSTTSTSSTHHHHTTTCHHCSE
T ss_pred EEEEEECCH-------HHHHHHHHHcCcccccee------eHHHHHHHHhhCCeEEEecCCCCcccCHHHHHHHHhhhhc
Confidence 688888753 2233333443 3334333 2344447899999999999998652 1123444 48
Q ss_pred EEEE-ecCCCc
Q 041159 257 MVQV-VPLGLE 266 (356)
Q Consensus 257 viEi-~P~~~~ 266 (356)
++.+ +|..++
T Consensus 105 v~Dla~Pr~i~ 115 (135)
T PF01488_consen 105 VIDLAVPRDID 115 (135)
T ss_dssp EEES-SS-SB-
T ss_pred eeccccCCCCC
Confidence 8888 676643
No 130
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=21.79 E-value=53 Score=29.08 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=41.9
Q ss_pred cCCCccccCHHHHHHHHHHcCCEEEEEcCCC---CCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCC
Q 041159 190 RGNSRKFLNEDEMVVMIEELGFQVVVTRPNR---MSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 190 R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~---~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pg 254 (356)
|+++|.|.=-+.+-+.|++.|.... .++ -..++||+.-+.+|.+=++.-|.+=++....++-
T Consensus 20 rt~sr~I~lG~S~~~flr~lG~~~t---GG~~g~~~~lreQ~~rL~~~~i~~~~~~~~~~~~~~~~~~ 84 (161)
T PF04796_consen 20 RTKSREIELGRSLSEFLRRLGLSPT---GGRRGTITRLREQMERLFACRITIGFNDGGSAATVNFQIV 84 (161)
T ss_pred ccCCceEeeccCHHHHHHHhCCCCC---CCCcccHHHHHHHHHHHHhheEEEEECCCCcccccccccc
Confidence 3344444333457778888887761 221 1469999999999999999998776655555543
No 131
>PRK08618 ornithine cyclodeaminase; Validated
Probab=21.64 E-value=1.5e+02 Score=28.93 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=40.9
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhh--cccCCCcEEEEE
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEE-LGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTE--LFLPAGAVMVQV 260 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~-~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~--lF~~pgs~viEi 260 (356)
++.+++|... +-+++.+.+++ +|.++...+ +.++ .+.+|||||..-+++ .-. -+++||+.|+-|
T Consensus 154 ~v~v~~r~~~----~a~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~aDiVi~aT~s~-~p~i~~~l~~G~hV~~i 220 (325)
T PRK08618 154 RVRVYSRTFE----KAYAFAQEIQSKFNTEIYVVN-----SADE---AIEEADIIVTVTNAK-TPVFSEKLKKGVHINAV 220 (325)
T ss_pred EEEEECCCHH----HHHHHHHHHHHhcCCcEEEeC-----CHHH---HHhcCCEEEEccCCC-CcchHHhcCCCcEEEec
Confidence 5677776543 33556665543 576655432 3343 458999999988877 222 478999998755
No 132
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.18 E-value=3.8e+02 Score=24.70 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=36.4
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHc----CCEEEEEcCC----------------CCCCHHHHHHHHhcCCEEEEe
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEEL----GFQVVVTRPN----------------RMSNLNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~----gf~v~~~~~~----------------~~~~~~eq~~~~~~advlvg~ 240 (356)
.++.+++++|-+.+ -|.+.+++++++. .+++.++... ...+..+..++++.||++|.+
T Consensus 196 ~~~~i~~~G~~~~~--k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~ 273 (364)
T cd03814 196 DRPVLLYVGRLAPE--KNLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFP 273 (364)
T ss_pred CCeEEEEEeccccc--cCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 35678899986542 3556666666553 2444433211 013566778899999998876
Q ss_pred eh
Q 041159 241 HG 242 (356)
Q Consensus 241 HG 242 (356)
.+
T Consensus 274 s~ 275 (364)
T cd03814 274 SR 275 (364)
T ss_pred cc
Confidence 54
No 133
>PRK06932 glycerate dehydrogenase; Provisional
Probab=20.85 E-value=1.5e+02 Score=28.78 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCC----CCCHHHHHHHHhcCCEEE-----Eeehhhhhhhcc---cCCCcEEE
Q 041159 200 DEMVVMIEELGFQVVVTRPNR----MSNLNKFTEVVNSCSVLV-----GAHGAGLTTELF---LPAGAVMV 258 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~----~~~~~eq~~~~~~advlv-----g~HGAgLtn~lF---~~pgs~vi 258 (356)
.++.+.++.+|.+|+..+... .....+.-+++..||+|+ ...--+|-|.=+ |+||+.+|
T Consensus 160 ~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI 230 (314)
T PRK06932 160 TEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLI 230 (314)
T ss_pred HHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE
No 134
>COG0860 AmiC N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=20.74 E-value=1.9e+02 Score=26.91 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCEEEEEcCCC-CCCHHHHHHH--HhcCCEEEEeehhhhhhh
Q 041159 201 EMVVMIEELGFQVVVTRPNR-MSNLNKFTEV--VNSCSVLVGAHGAGLTTE 248 (356)
Q Consensus 201 ev~~~l~~~gf~v~~~~~~~-~~~~~eq~~~--~~~advlvg~HGAgLtn~ 248 (356)
.+.+.|++.|++|+....++ ..++.|-.++ -.+||++|++|--+..+.
T Consensus 76 ~l~~~L~~~g~~v~mTR~~D~~~~l~~R~~~A~~~~adlfiSIH~na~~~~ 126 (231)
T COG0860 76 RLRDLLRAEGVEVVLTRTSDTFVSLNERVAIANASGADLFVSIHANAAPSS 126 (231)
T ss_pred HHHHHHHhCCCEEEEecCCCCcCCHHHHHHHHHhcCCCEEEEEecCCCCCC
Confidence 34556666788877654321 2555555544 456899999998776553
No 135
>PLN02928 oxidoreductase family protein
Probab=20.66 E-value=2e+02 Score=28.43 Aligned_cols=59 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEEcCCCC---------------------CCHHHHHHHHhcCCEEEEeeh-----hhhhhhcc---
Q 041159 200 DEMVVMIEELGFQVVVTRPNRM---------------------SNLNKFTEVVNSCSVLVGAHG-----AGLTTELF--- 250 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~~---------------------~~~~eq~~~~~~advlvg~HG-----AgLtn~lF--- 250 (356)
.++.+.|+.+|++|+..+.... .+..+.-+++.+||+|+..-- -+|-|.=+
T Consensus 172 ~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~ 251 (347)
T PLN02928 172 IELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSS 251 (347)
T ss_pred HHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhc
Q ss_pred cCCCcEEE
Q 041159 251 LPAGAVMV 258 (356)
Q Consensus 251 ~~pgs~vi 258 (356)
|+||+.+|
T Consensus 252 Mk~ga~lI 259 (347)
T PLN02928 252 MKKGALLV 259 (347)
T ss_pred CCCCeEEE
No 136
>PF14266 DUF4356: Domain of unknown function (DUF4356)
Probab=20.50 E-value=2.2e+02 Score=29.72 Aligned_cols=48 Identities=21% Similarity=0.596 Sum_probs=35.1
Q ss_pred cCCCcEEEEEEcCCCccccCHHHHH-HHHHHcCCEEEEEcCCCCCCHHHH
Q 041159 179 QREKPVLIFISRGNSRKFLNEDEMV-VMIEELGFQVVVTRPNRMSNLNKF 227 (356)
Q Consensus 179 ~~~~pr~~~i~R~~~R~i~N~~ev~-~~l~~~gf~v~~~~~~~~~~~~eq 227 (356)
+..-|+++++.-..+ .+.-+|.++ ..|...||++++..|...-+++..
T Consensus 406 ~~~vPKii~y~~~~~-~~s~ed~i~l~fln~~G~DIvif~PtG~~~iE~~ 454 (488)
T PF14266_consen 406 PQEVPKIIIYNNNEN-EFSREDAILLAFLNLIGFDIVIFNPTGYNDIENY 454 (488)
T ss_pred CCCCCeEEEEeCCCC-cCCHHHHHHHHHHHHhCeeEEEECCCCcchHHHh
Confidence 467899999998876 555555554 777889999999988754455443
No 137
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.43 E-value=1.9e+02 Score=25.64 Aligned_cols=72 Identities=22% Similarity=0.198 Sum_probs=45.1
Q ss_pred HHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcccCCCcEEEEEecCCCcCCCCCchHHHHh-hcCCeEE
Q 041159 207 EELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELFLPAGAVMVQVVPLGLEWGSTYYFGVPAR-EMGVQYL 285 (356)
Q Consensus 207 ~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF~~pgs~viEi~P~~~~~~~~~~y~~lA~-~~gl~Y~ 285 (356)
+..|+.+...++. -++.|- +++||++||=-|||----. ++-|.-+|=+....+ -.++-.++|. .....|.
T Consensus 59 k~~gl~id~y~f~--psl~e~---I~~AdlVIsHAGaGS~let-L~l~KPlivVvNd~L---MDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 59 KNGGLTIDGYDFS--PSLTED---IRSADLVISHAGAGSCLET-LRLGKPLIVVVNDSL---MDNHQLELAKQLAEEGYL 129 (170)
T ss_pred ccCCeEEEEEecC--ccHHHH---HhhccEEEecCCcchHHHH-HHcCCCEEEEeChHh---hhhHHHHHHHHHHhcCcE
Confidence 5568888887764 566665 5669999998888843322 455555554443332 1346678884 4446677
Q ss_pred EE
Q 041159 286 EY 287 (356)
Q Consensus 286 ~y 287 (356)
.|
T Consensus 130 ~~ 131 (170)
T KOG3349|consen 130 YY 131 (170)
T ss_pred EE
Confidence 44
No 138
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=20.00 E-value=4.4e+02 Score=26.21 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=37.8
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCC----CCCHHHHHHHH--hcCCEEEEeeh
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNR----MSNLNKFTEVV--NSCSVLVGAHG 242 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~----~~~~~eq~~~~--~~advlvg~HG 242 (356)
|++++..++..+---.+++.+.|++.|.++.+++... ..++.+.++.+ .++|+|||+=|
T Consensus 24 ~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG 88 (386)
T cd08191 24 RALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG 88 (386)
T ss_pred eEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6677775544443345678889998898887664221 12234444444 47999999988
Done!