Query 041159
Match_columns 356
No_of_seqs 265 out of 726
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a4i_A Methylenetetrahydrofola 77.1 9 0.00031 36.0 8.7 72 182-261 165-237 (301)
2 3tnl_A Shikimate dehydrogenase 74.1 23 0.0008 33.2 10.9 94 184-285 180-283 (315)
3 3czx_A Putative N-acetylmuramo 73.8 5.1 0.00017 34.6 5.7 46 202-247 37-84 (182)
4 1b0a_A Protein (fold bifunctio 73.6 11 0.00039 35.1 8.4 72 182-261 159-231 (288)
5 3t4e_A Quinate/shikimate dehyd 69.7 30 0.001 32.3 10.5 94 184-285 174-277 (312)
6 3ngx_A Bifunctional protein fo 67.8 9 0.00031 35.5 6.2 71 183-261 151-222 (276)
7 4a5o_A Bifunctional protein fo 67.6 10 0.00035 35.4 6.6 72 182-261 161-233 (286)
8 3l07_A Bifunctional protein fo 64.4 13 0.00043 34.7 6.6 72 182-261 161-233 (285)
9 3p2o_A Bifunctional protein fo 64.2 12 0.00042 34.8 6.5 72 182-261 160-232 (285)
10 4b4u_A Bifunctional protein fo 64.2 43 0.0015 31.4 10.2 71 182-260 179-250 (303)
11 4a26_A Putative C-1-tetrahydro 59.5 13 0.00046 34.8 5.8 74 182-261 165-239 (300)
12 1jwq_A N-acetylmuramoyl-L-alan 56.9 17 0.00058 31.2 5.7 46 202-247 37-86 (179)
13 3qay_A Endolysin; amidase A/B 55.2 21 0.00072 30.5 6.0 44 202-245 38-89 (180)
14 2amj_A Modulator of drug activ 51.9 24 0.00082 30.5 5.9 39 202-240 39-77 (204)
15 3ne8_A N-acetylmuramoyl-L-alan 51.4 22 0.00075 31.9 5.7 45 203-247 40-88 (234)
16 3fni_A Putative diflavin flavo 51.0 17 0.00057 30.2 4.6 55 181-238 5-61 (159)
17 3don_A Shikimate dehydrogenase 50.3 34 0.0012 31.3 7.0 93 184-285 119-230 (277)
18 2q62_A ARSH; alpha/beta, flavo 49.1 37 0.0013 30.5 6.9 58 181-240 33-105 (247)
19 3rpe_A MDAB, modulator of drug 45.2 23 0.0008 31.4 4.8 40 201-240 51-90 (218)
20 2fzv_A Putative arsenical resi 45.2 43 0.0015 30.8 6.8 56 181-239 57-129 (279)
21 1psw_A ADP-heptose LPS heptosy 44.9 90 0.0031 28.3 9.1 69 194-264 195-290 (348)
22 2c2x_A Methylenetetrahydrofola 43.6 34 0.0011 31.7 5.7 72 182-261 158-232 (281)
23 1edz_A 5,10-methylenetetrahydr 43.4 27 0.00091 33.0 5.1 77 181-261 176-275 (320)
24 3s40_A Diacylglycerol kinase; 41.2 1.5E+02 0.0051 27.0 9.9 66 199-264 28-98 (304)
25 3hly_A Flavodoxin-like domain; 40.9 31 0.0011 28.4 4.7 52 184-238 4-56 (161)
26 1xov_A PLY protein, plypsa; al 40.9 19 0.00066 34.0 3.7 43 202-244 46-94 (326)
27 4dio_A NAD(P) transhydrogenase 39.6 44 0.0015 32.5 6.1 35 227-261 269-312 (405)
28 2egg_A AROE, shikimate 5-dehyd 39.2 90 0.0031 28.5 8.0 57 225-285 196-260 (297)
29 2gt1_A Lipopolysaccharide hept 39.2 87 0.003 28.3 7.9 81 181-263 177-281 (326)
30 1qtn_A Caspase-8; apoptosis, d 38.1 37 0.0013 28.7 4.7 52 198-254 56-118 (164)
31 3tov_A Glycosyl transferase fa 36.2 1.8E+02 0.0062 26.9 9.8 80 182-263 185-289 (349)
32 3zy2_A Putative GDP-fucose pro 35.0 45 0.0015 32.0 5.2 62 183-250 280-341 (362)
33 3ezx_A MMCP 1, monomethylamine 34.8 69 0.0023 28.0 6.1 63 180-244 90-153 (215)
34 3p2y_A Alanine dehydrogenase/p 34.4 51 0.0018 31.8 5.6 34 228-261 260-302 (381)
35 3l4e_A Uncharacterized peptida 34.2 59 0.002 28.3 5.6 65 182-247 27-93 (206)
36 1i1q_B Anthranilate synthase c 34.0 38 0.0013 28.7 4.2 52 183-240 1-55 (192)
37 3vue_A GBSS-I, granule-bound s 33.8 1.3E+02 0.0043 29.9 8.7 49 161-217 312-363 (536)
38 2yxb_A Coenzyme B12-dependent 33.8 1.1E+02 0.0039 25.2 7.1 56 180-237 16-73 (161)
39 2dko_A Caspase-3; low barrier 33.6 33 0.0011 28.4 3.6 52 198-254 42-104 (146)
40 2eez_A Alanine dehydrogenase; 31.5 1.1E+02 0.0039 28.7 7.5 93 194-291 14-119 (369)
41 1nw9_B Caspase 9, apoptosis-re 31.4 34 0.0012 31.3 3.6 44 198-244 47-101 (277)
42 2ql9_A Caspase-7; cysteine pro 31.2 31 0.0011 29.5 3.1 52 198-254 70-132 (173)
43 2j32_A Caspase-3; Pro-caspase3 30.9 38 0.0013 30.4 3.9 55 198-254 42-104 (250)
44 3jyo_A Quinate/shikimate dehyd 29.9 1.1E+02 0.0038 27.9 6.9 88 184-285 153-249 (283)
45 3qhp_A Type 1 capsular polysac 29.5 75 0.0026 25.1 5.2 51 182-241 32-82 (166)
46 2fi0_A Conserved domain protei 29.5 37 0.0012 25.1 2.9 21 194-214 58-78 (81)
47 3gvp_A Adenosylhomocysteinase 29.3 53 0.0018 32.3 4.8 57 202-261 235-307 (435)
48 3h11_A CAsp8 and FADD-like apo 28.4 69 0.0024 29.3 5.2 66 181-255 42-119 (272)
49 1m72_A Caspase-1; caspase, cys 28.4 45 0.0015 30.5 3.9 55 198-254 57-119 (272)
50 3p45_A Caspase-6; protease, hu 27.4 56 0.0019 28.1 4.1 53 198-255 70-133 (179)
51 2rir_A Dipicolinate synthase, 27.2 1.3E+02 0.0043 27.3 6.8 52 229-285 211-265 (300)
52 3pwz_A Shikimate dehydrogenase 27.1 1.6E+02 0.0056 26.5 7.5 48 232-283 180-233 (272)
53 2bfw_A GLGA glycogen synthase; 26.9 78 0.0027 25.8 4.9 52 183-241 71-123 (200)
54 2qv7_A Diacylglycerol kinase D 26.6 2.6E+02 0.0089 25.6 9.0 66 199-264 44-115 (337)
55 1mkz_A Molybdenum cofactor bio 26.6 1.1E+02 0.0037 25.7 5.8 68 180-247 8-83 (172)
56 2vhw_A Alanine dehydrogenase; 25.8 1.7E+02 0.006 27.5 7.8 91 194-288 14-118 (377)
57 3sir_A Caspase; hydrolase; 2.6 25.5 52 0.0018 29.8 3.7 55 198-254 45-107 (259)
58 3o8q_A Shikimate 5-dehydrogena 25.5 46 0.0016 30.5 3.4 48 232-283 186-239 (281)
59 3h11_B Caspase-8; cell death, 25.4 64 0.0022 29.4 4.3 53 198-255 50-113 (271)
60 2fz5_A Flavodoxin; alpha/beta 25.0 71 0.0024 24.7 4.1 48 184-238 3-51 (137)
61 2f62_A Nucleoside 2-deoxyribos 24.0 1.1E+02 0.0039 25.5 5.4 39 200-240 30-74 (161)
62 2nn3_C Caspase-1; cysteine pro 23.9 67 0.0023 30.0 4.3 55 198-254 85-147 (310)
63 3okp_A GDP-mannose-dependent a 23.8 3.1E+02 0.011 24.5 9.0 69 162-240 186-279 (394)
64 3pzy_A MOG; ssgcid, seattle st 23.8 80 0.0028 26.4 4.4 67 180-247 5-80 (164)
65 2h54_A Caspase-1; allosteric s 23.2 79 0.0027 27.0 4.3 43 184-229 45-94 (178)
66 1f1j_A Caspase-7 protease; cas 23.2 50 0.0017 30.8 3.2 55 198-254 95-157 (305)
67 3od5_A Caspase-6; caspase doma 22.8 57 0.0019 29.9 3.4 53 198-255 47-110 (278)
68 3aek_B Light-independent proto 22.2 28 0.00096 35.0 1.3 101 181-284 152-257 (525)
69 3rht_A (gatase1)-like protein; 21.8 46 0.0016 30.3 2.6 72 183-261 5-86 (259)
70 3fbt_A Chorismate mutase and s 21.7 2.6E+02 0.009 25.4 7.8 133 183-352 123-275 (282)
71 1y5e_A Molybdenum cofactor bio 21.6 1.5E+02 0.0051 24.6 5.7 67 181-247 12-86 (169)
72 2d5c_A AROE, shikimate 5-dehyd 21.5 2.2E+02 0.0077 24.9 7.2 91 184-285 118-226 (263)
73 1l7d_A Nicotinamide nucleotide 21.5 3.6E+02 0.012 25.2 9.1 92 194-289 14-124 (384)
74 1ccw_A Protein (glutamate muta 21.3 1.4E+02 0.0047 23.9 5.2 54 182-237 3-58 (137)
75 3kbq_A Protein TA0487; structu 21.1 89 0.003 26.6 4.1 67 182-248 3-77 (172)
76 1x13_A NAD(P) transhydrogenase 21.1 1.3E+02 0.0044 28.9 5.8 56 201-258 186-289 (401)
77 2ohh_A Type A flavoprotein FPR 20.4 95 0.0033 29.0 4.6 52 185-239 261-313 (404)
78 1z0s_A Probable inorganic poly 20.2 2.2E+02 0.0077 25.9 7.0 53 182-246 29-81 (278)
79 2gk3_A Putative cytoplasmic pr 20.1 43 0.0015 30.1 2.0 61 181-241 9-85 (256)
No 1
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=77.09 E-value=9 Score=36.00 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. +. .-+..+|...|..|.++.-. +..+ -+.+.+||++|+.-|.. +-..=|.+||++||-+
T Consensus 165 gk~vvVIG~s~i---VG-~p~A~lL~~~gAtVtv~hs~-t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDV 236 (301)
T 1a4i_A 165 GRHAVVVGRSKI---VG-APMHDLLLWNNATVTTCHSK-TAHL---DEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDC 236 (301)
T ss_dssp TCEEEEECCCTT---TH-HHHHHHHHHTTCEEEEECTT-CSSH---HHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEECCCch---HH-HHHHHHHHhCCCeEEEEECC-cccH---HHHhccCCEEEECCCCcccCCHHHcCCCcEEEEc
Confidence 448999998753 11 12556677789999887532 2334 45688999999999986 5555567999999987
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 237 g 237 (301)
T 1a4i_A 237 G 237 (301)
T ss_dssp C
T ss_pred c
Confidence 5
No 2
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=74.11 E-value=23 Score=33.18 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=61.6
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhh---------hcccCC
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEE-LGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTT---------ELFLPA 253 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~-~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn---------~lF~~p 253 (356)
++++++|+.. .....+++.+.+.+ .|.++.....+ +..+--+.+..+|+||..-.+|+.. .-++++
T Consensus 180 ~V~i~nR~~~-~~~~a~~la~~~~~~~~~~~~~~~~~---~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~ 255 (315)
T 3tnl_A 180 EISIFNRKDD-FYANAEKTVEKINSKTDCKAQLFDIE---DHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRP 255 (315)
T ss_dssp EEEEEECSST-THHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCT
T ss_pred EEEEEECCCc-hHHHHHHHHHHhhhhcCCceEEeccc---hHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCC
Confidence 7888887642 13344556555544 56666665543 2333345678999999888888752 124678
Q ss_pred CcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 254 GAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 254 gs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
+.+|++++-.- ..+.|-..|+..|.+.+
T Consensus 256 ~~~V~DlvY~P----~~T~ll~~A~~~G~~~~ 283 (315)
T 3tnl_A 256 ELIVSDVVYKP----TKTRLLEIAEEQGCQTL 283 (315)
T ss_dssp TCEEEESCCSS----SSCHHHHHHHHTTCEEE
T ss_pred CCEEEEeccCC----CCCHHHHHHHHCCCeEe
Confidence 89999987321 24678899999998754
No 3
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=73.81 E-value=5.1 Score=34.62 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=36.0
Q ss_pred HHHHHHHc-CCEEEEEcC-CCCCCHHHHHHHHhcCCEEEEeehhhhhh
Q 041159 202 MVVMIEEL-GFQVVVTRP-NRMSNLNKFTEVVNSCSVLVGAHGAGLTT 247 (356)
Q Consensus 202 v~~~l~~~-gf~v~~~~~-~~~~~~~eq~~~~~~advlvg~HGAgLtn 247 (356)
|.+.|++. |++|+.... +...++.+-+++.++||++|+.|--+..|
T Consensus 37 l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 37 VASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred HHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 44566667 999987543 33578999999999999999999777654
No 4
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=73.64 E-value=11 Score=35.08 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=50.9
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. +. .-+..+|...|..|.++.-. +..+. +.+.+||++|+.-|+. +-..=|.+||++||-+
T Consensus 159 gk~vvVIG~s~i---VG-~p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDV 230 (288)
T 1b0a_A 159 GLNAVVIGASNI---VG-RPMSMELLLAGCTTTVTHRF-TKNLR---HHVENADLLIVAVGKPGFIPGDWIKEGAIVIDV 230 (288)
T ss_dssp TCEEEEECCCTT---TH-HHHHHHHHTTTCEEEEECSS-CSCHH---HHHHHCSEEEECSCCTTCBCTTTSCTTCEEEEC
T ss_pred CCEEEEECCChH---HH-HHHHHHHHHCCCeEEEEeCC-chhHH---HHhccCCEEEECCCCcCcCCHHHcCCCcEEEEc
Confidence 348999998753 11 12556677789999887532 33444 5578999999999976 5544467999999987
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 231 g 231 (288)
T 1b0a_A 231 G 231 (288)
T ss_dssp C
T ss_pred c
Confidence 5
No 5
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=69.70 E-value=30 Score=32.34 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=61.0
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHH-cCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhh---h------hcccCC
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEE-LGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLT---T------ELFLPA 253 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~-~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLt---n------~lF~~p 253 (356)
++++++|+..| ....+++.+.+.+ .|..+...+.+ .+.+-.+.+..+|+||..-.+|+. . .-++++
T Consensus 174 ~v~v~nRt~~~-~~~a~~la~~~~~~~~~~v~~~~~~---~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~ 249 (312)
T 3t4e_A 174 EIKLFNRKDDF-FEKAVAFAKRVNENTDCVVTVTDLA---DQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRP 249 (312)
T ss_dssp EEEEEECSSTH-HHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCT
T ss_pred EEEEEECCCch-HHHHHHHHHHhhhccCcceEEechH---hhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCC
Confidence 77888877433 3334555555543 56776655443 232223567899999999888872 1 124678
Q ss_pred CcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 254 GAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 254 gs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
+..|++++-.- ..+.|-..|+..|.+..
T Consensus 250 ~~~v~D~vY~P----~~T~ll~~A~~~G~~~~ 277 (312)
T 3t4e_A 250 ELLVTECVYNP----HMTKLLQQAQQAGCKTI 277 (312)
T ss_dssp TCEEEECCCSS----SSCHHHHHHHHTTCEEE
T ss_pred CCEEEEeccCC----CCCHHHHHHHHCCCeEE
Confidence 89999987322 24688899999998754
No 6
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=67.76 E-value=9 Score=35.54 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=51.9
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEEe
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQVV 261 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi~ 261 (356)
-++++|.|.+. =-.-+..+|...|..|.++.-. +.++.| .+++|||+|+.-|+. +-..=|.+||++||-+-
T Consensus 151 k~vvVvG~s~i----VG~plA~lL~~~gAtVtv~~~~-t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvg 222 (276)
T 3ngx_A 151 NTVTIVNRSPV----VGRPLSMMLLNRNYTVSVCHSK-TKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVG 222 (276)
T ss_dssp CEEEEECCCTT----THHHHHHHHHHTTCEEEEECTT-CSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCEEEECC
T ss_pred CEEEEEcCChH----HHHHHHHHHHHCCCeEEEEeCC-cccHHH---hhccCCEEEECCCCCccccHhhccCCcEEEEec
Confidence 48899998762 1123556777789999887543 455654 478999999999874 55556779999999864
No 7
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=67.65 E-value=10 Score=35.38 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. + -.-+..+|...|..|.++.-. +..+.+ .+.+|||+|+.-|+. +-..=|.+||++||-+
T Consensus 161 Gk~vvVvGrs~i---V-G~plA~lL~~~gAtVtv~hs~-T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 232 (286)
T 4a5o_A 161 GMDAVVVGASNI---V-GRPMALELLLGGCTVTVTHRF-TRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIVIDV 232 (286)
T ss_dssp TCEEEEECTTST---T-HHHHHHHHHHTTCEEEEECTT-CSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeCC-CcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEEEEe
Confidence 348899998863 1 113556677789999887532 345554 578999999999876 6566677999999987
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 233 g 233 (286)
T 4a5o_A 233 G 233 (286)
T ss_dssp C
T ss_pred c
Confidence 5
No 8
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=64.36 E-value=13 Score=34.70 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=51.3
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. + -.-+..+|...|..|.++.-. +..+. +.+.+|||+|+.-|+. +-..=|.+||++||.+
T Consensus 161 Gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~hs~-t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 232 (285)
T 3l07_A 161 GAYAVVVGASNV---V-GKPVSQLLLNAKATVTTCHRF-TTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVVIDV 232 (285)
T ss_dssp TCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTT-CSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEECCCch---h-HHHHHHHHHHCCCeEEEEeCC-chhHH---HhcccCCEEEECCCCCCCCCHHHcCCCcEEEEe
Confidence 347899998762 1 113556777789999887532 34555 4589999999998875 5555567999999987
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 233 g 233 (285)
T 3l07_A 233 G 233 (285)
T ss_dssp C
T ss_pred c
Confidence 4
No 9
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=64.21 E-value=12 Score=34.76 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. + -.-+..+|...|..|.++.-. +..+. +...+|||+|+.-|+. +-..=|.+||++||-+
T Consensus 160 Gk~vvVvGrs~i---V-G~p~A~lL~~~gAtVtv~h~~-t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDV 231 (285)
T 3p2o_A 160 GKDAVIIGASNI---V-GRPMATMLLNAGATVSVCHIK-TKDLS---LYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDV 231 (285)
T ss_dssp TCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTT-CSCHH---HHHTTCSEEEECSSCTTCBCGGGSCTTEEEEEC
T ss_pred CCEEEEECCCch---H-HHHHHHHHHHCCCeEEEEeCC-chhHH---HHhhcCCEEEECCCCCCcCCHHHcCCCeEEEEe
Confidence 348899998863 1 113556777789999887543 34454 4588999999998875 5555677999999987
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 232 g 232 (285)
T 3p2o_A 232 G 232 (285)
T ss_dssp C
T ss_pred c
Confidence 4
No 10
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=64.18 E-value=43 Score=31.40 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. --.-+..+|.+.|..|.++... +..+.+ ..++|||+|+.=| +++-..=|.+||++||-+
T Consensus 179 Gk~vvViGRS~i----VGkPla~LL~~~~ATVTi~Hs~-T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDV 250 (303)
T 4b4u_A 179 GKHAVVVGRSAI----LGKPMAMMLLQANATVTICHSR-TQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAVVVDA 250 (303)
T ss_dssp TCEEEEECCCTT----THHHHHHHHHHTTCEEEEECTT-CSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEEecccc----ccchHHHHHHhcCCEEEEecCC-CCCHHH---HhhcCCeEEeccCCCCccccccccCCCEEEEe
Confidence 347899998764 2223455666779999887543 455554 5789999998766 455556689999999975
No 11
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=59.53 E-value=13 Score=34.78 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=51.5
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMVQV 260 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~viEi 260 (356)
.-++++|.|.+. . -.-+..+|...|.+|.++.-. +.++. ..+.+.+|||+|+.-|.. +-..=|.+||++||-+
T Consensus 165 Gk~vvVIG~s~i---V-G~p~A~lL~~~gAtVtv~~~~-T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDv 238 (300)
T 4a26_A 165 GKRAVVLGRSNI---V-GAPVAALLMKENATVTIVHSG-TSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDV 238 (300)
T ss_dssp TCEEEEECCCTT---T-HHHHHHHHHHTTCEEEEECTT-SCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEEC
T ss_pred CCEEEEECCCch---H-HHHHHHHHHHCCCeEEEEeCC-CCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEE
Confidence 348899998763 1 113556677789999887532 23333 015689999999998875 5555678999999987
Q ss_pred e
Q 041159 261 V 261 (356)
Q Consensus 261 ~ 261 (356)
-
T Consensus 239 g 239 (300)
T 4a26_A 239 G 239 (300)
T ss_dssp C
T ss_pred e
Confidence 4
No 12
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=56.93 E-value=17 Score=31.17 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=33.9
Q ss_pred HHHHHHHc-CCEEEEEcC-CCCCCHHHHHHHHh--cCCEEEEeehhhhhh
Q 041159 202 MVVMIEEL-GFQVVVTRP-NRMSNLNKFTEVVN--SCSVLVGAHGAGLTT 247 (356)
Q Consensus 202 v~~~l~~~-gf~v~~~~~-~~~~~~~eq~~~~~--~advlvg~HGAgLtn 247 (356)
|.+.|++. |++|+.... +...++.+.+++.+ +||++|+.|--+..|
T Consensus 37 l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~ 86 (179)
T 1jwq_A 37 VESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS 86 (179)
T ss_dssp HHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC
Confidence 44566667 999886543 23578999888886 699999999776544
No 13
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=55.21 E-value=21 Score=30.54 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHcCCEE-EEEcCCC-CC----CHHHHHHHHh--cCCEEEEeehhhh
Q 041159 202 MVVMIEELGFQV-VVTRPNR-MS----NLNKFTEVVN--SCSVLVGAHGAGL 245 (356)
Q Consensus 202 v~~~l~~~gf~v-~~~~~~~-~~----~~~eq~~~~~--~advlvg~HGAgL 245 (356)
|.+.|++.|++| +++.-+. .. ++.+-+++.+ +||++|+.|--+.
T Consensus 38 l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 38 LADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 345566679986 3332221 12 4888888775 5999999997764
No 14
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=51.87 E-value=24 Score=30.50 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=28.1
Q ss_pred HHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe
Q 041159 202 MVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 202 v~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~ 240 (356)
+++.+++.|.+|.+++..+...+.+.++.+..||.||=.
T Consensus 39 ~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 39 ADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp HHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 445555568888877765456788888888899987743
No 15
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=51.44 E-value=22 Score=31.89 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=32.9
Q ss_pred HHHHHHcC-CEEEEEcC-CCCCCHHHHHHHHh--cCCEEEEeehhhhhh
Q 041159 203 VVMIEELG-FQVVVTRP-NRMSNLNKFTEVVN--SCSVLVGAHGAGLTT 247 (356)
Q Consensus 203 ~~~l~~~g-f~v~~~~~-~~~~~~~eq~~~~~--~advlvg~HGAgLtn 247 (356)
.+.|++.| ++|+.... +...++.+.+++.+ +||++|+.|-.+..+
T Consensus 40 ~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~ 88 (234)
T 3ne8_A 40 RDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV 88 (234)
T ss_dssp HHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence 34555567 88876533 33578999988887 799999999776654
No 16
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=50.97 E-value=17 Score=30.19 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=39.6
Q ss_pred CCcEEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCC-CHHHHHHHHhcCCEEE
Q 041159 181 EKPVLIFISRGNS-RKFLNEDEMVVMIEELGFQVVVTRPNRMS-NLNKFTEVVNSCSVLV 238 (356)
Q Consensus 181 ~~pr~~~i~R~~~-R~i~N~~ev~~~l~~~gf~v~~~~~~~~~-~~~eq~~~~~~advlv 238 (356)
++.-++|-|..++ +++.+ .+.+.+++.|.++.+.+... . +..+.+..+..+|.+|
T Consensus 5 ~kv~IvY~S~~GnT~~iA~--~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~d~ii 61 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQ--AIINGITKTGVGVDVVDLGA-AVDLQELRELVGRCTGLV 61 (159)
T ss_dssp CEEEEEECTTSTTHHHHHH--HHHHHHHHTTCEEEEEESSS-CCCHHHHHHHHHTEEEEE
T ss_pred CEEEEEEECCChHHHHHHH--HHHHHHHHCCCeEEEEECcC-cCCHHHHHHHHHhCCEEE
Confidence 3445777888775 66654 36667777899988887763 5 7888888888888655
No 17
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=50.29 E-value=34 Score=31.33 Aligned_cols=93 Identities=11% Similarity=0.150 Sum_probs=55.2
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHcCC-EEEEEcCCC-----------CCCHHHHHHHHhcCCEEEEeehhhhhhh---
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEELGF-QVVVTRPNR-----------MSNLNKFTEVVNSCSVLVGAHGAGLTTE--- 248 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~gf-~v~~~~~~~-----------~~~~~eq~~~~~~advlvg~HGAgLtn~--- 248 (356)
+++++.=.+. -..++..|.+.|+ +|.+.+-.. ..++.+.-+.+.++|+||..-.+|+..-
T Consensus 119 ~vlvlGaGg~-----g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~ 193 (277)
T 3don_A 119 YILILGAGGA-----SKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS 193 (277)
T ss_dssp CEEEECCSHH-----HHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred EEEEECCcHH-----HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence 5667653321 1235566667787 666653210 1245555566889999998888886432
Q ss_pred ----cccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 249 ----LFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 249 ----lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
-++++++.|+++.-.- ..+.+-..|+..|.+..
T Consensus 194 ~l~~~~l~~~~~V~D~vY~P----~~T~ll~~A~~~G~~~~ 230 (277)
T 3don_A 194 VISLNRLASHTLVSDIVYNP----YKTPILIEAEQRGNPIY 230 (277)
T ss_dssp SSCCTTCCSSCEEEESCCSS----SSCHHHHHHHHTTCCEE
T ss_pred CCCHHHcCCCCEEEEecCCC----CCCHHHHHHHHCcCEEe
Confidence 2367899999986221 23567888999998754
No 18
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=49.14 E-value=37 Score=30.45 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=38.0
Q ss_pred CCcEEEEEEcCCCccccCHHH----HHHHHHHcCCEEEEEcCCCCCC-----------HHHHHHHHhcCCEEEEe
Q 041159 181 EKPVLIFISRGNSRKFLNEDE----MVVMIEELGFQVVVTRPNRMSN-----------LNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~e----v~~~l~~~gf~v~~~~~~~~~~-----------~~eq~~~~~~advlvg~ 240 (356)
...++++|.=.. |+=-|-.. +.+.+++.|.++.+++..+ ++ +.+.++.+..||.||=.
T Consensus 33 ~~mkIliI~GS~-r~~s~t~~La~~~~~~l~~~g~eve~idL~~-~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~ 105 (247)
T 2q62_A 33 HRPRILILYGSL-RTVSYSRLLAEEARRLLEFFGAEVKVFDPSG-LPLPDAAPVSHPKVQELRELSIWSEGQVWV 105 (247)
T ss_dssp SCCEEEEEECCC-CSSCHHHHHHHHHHHHHHHTTCEEEECCCTT-CCCTTSSCTTSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCeEEEEEccC-CCCCHHHHHHHHHHHHHhhCCCEEEEEEhhc-CCCCcCCCCCCHHHHHHHHHHHHCCEEEEE
Confidence 345788877221 33233333 4455556799999888763 55 77888999999998743
No 19
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=45.21 E-value=23 Score=31.36 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEe
Q 041159 201 EMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 201 ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~ 240 (356)
++.+.+++.|.+|.+.+..+...+.+..+.+..||+||=.
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 4556666679998888776557888888999999998743
No 20
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.16 E-value=43 Score=30.81 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=38.0
Q ss_pred CCcEEEEEE---cCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCC------------HHHHHHHHhcCCEEEE
Q 041159 181 EKPVLIFIS---RGNS--RKFLNEDEMVVMIEELGFQVVVTRPNRMSN------------LNKFTEVVNSCSVLVG 239 (356)
Q Consensus 181 ~~pr~~~i~---R~~~--R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~------------~~eq~~~~~~advlvg 239 (356)
...+|++|. |+++ +++.+ ++++.+++.|.++.+++..+ ++ +.+.++.+..||.+|=
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~--~~~~~l~~~G~eveiidL~d-lpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVE--EAARLLQFFGAETRIFDPSD-LPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHH--HHHHHHHHTTCEEEEBCCTT-CCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHH--HHHHHHhhCCCEEEEEehhc-CCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 456888887 3222 33333 34555666799999888763 55 6778889999999874
No 21
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=44.85 E-value=90 Score=28.27 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=46.0
Q ss_pred cccc--CHHHHHHHHHHcCCEEEEEc-------------------------CCCCCCHHHHHHHHhcCCEEEEeehhhhh
Q 041159 194 RKFL--NEDEMVVMIEELGFQVVVTR-------------------------PNRMSNLNKFTEVVNSCSVLVGAHGAGLT 246 (356)
Q Consensus 194 R~i~--N~~ev~~~l~~~gf~v~~~~-------------------------~~~~~~~~eq~~~~~~advlvg~HGAgLt 246 (356)
|++- +..++++.|.+.|++++++- ....+++.|-+++++.||++||.= +|..
T Consensus 195 k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~D-sg~~ 273 (348)
T 1psw_A 195 KRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND-SGLM 273 (348)
T ss_dssp GSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES-SHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecC-CHHH
Confidence 5655 55677777765577766431 111377899999999999999984 4445
Q ss_pred hhcccCCCcEEEEEecCC
Q 041159 247 TELFLPAGAVMVQVVPLG 264 (356)
Q Consensus 247 n~lF~~pgs~viEi~P~~ 264 (356)
|+--+ =|+-+|-|+...
T Consensus 274 HlAaa-~g~P~v~lfg~t 290 (348)
T 1psw_A 274 HVAAA-LNRPLVALYGPS 290 (348)
T ss_dssp HHHHH-TTCCEEEEESSS
T ss_pred HHHHH-cCCCEEEEECCC
Confidence 55333 467777777554
No 22
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=43.57 E-value=34 Score=31.74 Aligned_cols=72 Identities=17% Similarity=0.321 Sum_probs=49.9
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHc--CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhh-hhhhcccCCCcEEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEEL--GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAG-LTTELFLPAGAVMV 258 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~--gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAg-Ltn~lF~~pgs~vi 258 (356)
.-++++|.|.+. +.. -+..+|... |..|.++.-. + .+..+.+.+|||+|+.-|+. +-..=+.+||++||
T Consensus 158 gk~vvVvG~s~i---VG~-p~A~lL~~~g~~atVtv~h~~-t---~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVI 229 (281)
T 2c2x_A 158 GAHVVVIGRGVT---VGR-PLGLLLTRRSENATVTLCHTG-T---RDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVI 229 (281)
T ss_dssp TCEEEEECCCTT---THH-HHHHHHTSTTTCCEEEEECTT-C---SCHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEEE
T ss_pred CCEEEEECCCcH---HHH-HHHHHHhcCCCCCEEEEEECc-h---hHHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEE
Confidence 348899998752 111 244556666 8888887432 2 33445688999999999977 55555679999999
Q ss_pred EEe
Q 041159 259 QVV 261 (356)
Q Consensus 259 Ei~ 261 (356)
-+-
T Consensus 230 DVg 232 (281)
T 2c2x_A 230 DVG 232 (281)
T ss_dssp ECC
T ss_pred Ecc
Confidence 764
No 23
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=43.39 E-value=27 Score=32.98 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=50.9
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCC-------------CCCCH--------HHHHHHHhcCCEEEE
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPN-------------RMSNL--------NKFTEVVNSCSVLVG 239 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~-------------~~~~~--------~eq~~~~~~advlvg 239 (356)
..-++++|.|.+. +.. -+...|...|..|.+++-. ...+. .+.-+.+.+|||||+
T Consensus 176 ~gk~vvVIG~G~i---VG~-~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 176 YGKKCIVINRSEI---VGR-PLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TTCEEEEECCCTT---THH-HHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCcc---hHH-HHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 3448999998742 111 2456666778888876321 00222 667788999999999
Q ss_pred eehhh--hhhhcccCCCcEEEEEe
Q 041159 240 AHGAG--LTTELFLPAGAVMVQVV 261 (356)
Q Consensus 240 ~HGAg--Ltn~lF~~pgs~viEi~ 261 (356)
.-|+. +-..=+.+||++||-+-
T Consensus 252 Atg~p~~vI~~e~vk~GavVIDVg 275 (320)
T 1edz_A 252 GVPSENYKFPTEYIKEGAVCINFA 275 (320)
T ss_dssp CCCCTTCCBCTTTSCTTEEEEECS
T ss_pred CCCCCcceeCHHHcCCCeEEEEcC
Confidence 99986 23333468999999764
No 24
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=41.19 E-value=1.5e+02 Score=26.97 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH-hcCCEEEEeehhhhhhh----cccCCCcEEEEEecCC
Q 041159 199 EDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV-NSCSVLVGAHGAGLTTE----LFLPAGAVMVQVVPLG 264 (356)
Q Consensus 199 ~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~-~~advlvg~HGAgLtn~----lF~~pgs~viEi~P~~ 264 (356)
.+++.+.|++.|.++.+...+..-...++++.+ .++|.+|.+=|-|--|. +.-.+...-+=++|.|
T Consensus 28 ~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 28 LTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhhCCCCCcEEEecCC
Confidence 357888888889888776544333455555443 47899999999885554 4332334567799998
No 25
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=40.94 E-value=31 Score=28.43 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=36.1
Q ss_pred EEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 041159 184 VLIFISRGNS-RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLV 238 (356)
Q Consensus 184 r~~~i~R~~~-R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlv 238 (356)
-++|-|..|+ +++.+ .+.+.+++.|.++.+.+..+ .+..+.+.-+.++|.+|
T Consensus 4 ~IvY~S~tGnT~~~A~--~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~d~ii 56 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQ--AIGRGLVKTGVAVEMVDLRA-VDPQELIEAVSSARGIV 56 (161)
T ss_dssp EEEECTTSTTHHHHHH--HHHHHHHHTTCCEEEEETTT-CCHHHHHHHHHHCSEEE
T ss_pred EEEEECCChHHHHHHH--HHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhCCEEE
Confidence 4677777765 55544 35566666799888877663 67778777778888655
No 26
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=40.92 E-value=19 Score=34.04 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHHHHHcCCEEE-E-EcCC--CCCCHHHHHHHHh--cCCEEEEeehhh
Q 041159 202 MVVMIEELGFQVV-V-TRPN--RMSNLNKFTEVVN--SCSVLVGAHGAG 244 (356)
Q Consensus 202 v~~~l~~~gf~v~-~-~~~~--~~~~~~eq~~~~~--~advlvg~HGAg 244 (356)
|.+.|++.|++|. + +.-+ ...++.+.+++.+ +||++|+.|-.+
T Consensus 46 l~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 46 ASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 3345556799952 2 3211 1245777777776 599999999766
No 27
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=39.59 E-value=44 Score=32.52 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHhcCCEEEEeehhh-------hhhhcc--cCCCcEEEEEe
Q 041159 227 FTEVVNSCSVLVGAHGAG-------LTTELF--LPAGAVMVQVV 261 (356)
Q Consensus 227 q~~~~~~advlvg~HGAg-------Ltn~lF--~~pgs~viEi~ 261 (356)
..+.+..|||+|+..+.- ++.-++ |+||+++|-+-
T Consensus 269 l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 345678999999875311 333333 89999999886
No 28
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=39.18 E-value=90 Score=28.52 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCEEEEeehhhhhh--------hcccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 225 NKFTEVVNSCSVLVGAHGAGLTT--------ELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 225 ~eq~~~~~~advlvg~HGAgLtn--------~lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
.+-.+.+.++|+||..-|+++.- .-++++|+.|+.+.-. + ..+.+...|+..|.+++
T Consensus 196 ~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~---P-~~T~ll~~A~~~G~~~v 260 (297)
T 2egg_A 196 AEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYN---P-LETKWLKEAKARGARVQ 260 (297)
T ss_dssp HHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCS---S-SSCHHHHHHHHTTCEEE
T ss_pred HHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCC---C-CCCHHHHHHHHCcCEEE
Confidence 33345678999999999999841 1235688999988631 1 23457778899998765
No 29
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=39.18 E-value=87 Score=28.28 Aligned_cols=81 Identities=12% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCcEEEEEE--cCCCcccc--CHHHHHHHHHHcCCEEEEE-c-C------------------CCCCCHHHHHHHHhcCCE
Q 041159 181 EKPVLIFIS--RGNSRKFL--NEDEMVVMIEELGFQVVVT-R-P------------------NRMSNLNKFTEVVNSCSV 236 (356)
Q Consensus 181 ~~pr~~~i~--R~~~R~i~--N~~ev~~~l~~~gf~v~~~-~-~------------------~~~~~~~eq~~~~~~adv 236 (356)
.++.+++.- |...|++- +-.|+++.|.+.|++++.+ . + ...+++.|-++++++||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 345554432 22236665 4556666665568877664 1 1 013679999999999999
Q ss_pred EEEeehhhhhhhcccCCCcEEEEEecC
Q 041159 237 LVGAHGAGLTTELFLPAGAVMVQVVPL 263 (356)
Q Consensus 237 lvg~HGAgLtn~lF~~pgs~viEi~P~ 263 (356)
+||+= +|.+|+--+ -|+-+|-|+..
T Consensus 257 ~I~~D-SG~~HlAaa-~g~P~v~lfg~ 281 (326)
T 2gt1_A 257 VVSVD-TGLSHLTAA-LDRPNITVYGP 281 (326)
T ss_dssp EEEES-SHHHHHHHH-TTCCEEEEESS
T ss_pred EEecC-CcHHHHHHH-cCCCEEEEECC
Confidence 99994 333444333 46667777754
No 30
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=38.05 E-value=37 Score=28.70 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHH---HHHHHHhcCC--------EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLN---KFTEVVNSCS--------VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~---eq~~~~~~ad--------vlvg~HGAgLtn~lF~~pg 254 (356)
..+.|.+.++++||+|.+.+ +++.. +.++-++..| ++|--||-- +.++...|
T Consensus 56 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~--g~i~g~D~ 118 (164)
T 1qtn_A 56 DAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDG 118 (164)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTS
T ss_pred HHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCC--CEEEeeCC
Confidence 34456788888999998765 25544 4444454444 566668753 66776665
No 31
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=36.23 E-value=1.8e+02 Score=26.85 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=51.0
Q ss_pred CcEEEEEE--cCCCcccc--CHHHHHHHHHHcCCEEEEEcC---------------------CCCCCHHHHHHHHhcCCE
Q 041159 182 KPVLIFIS--RGNSRKFL--NEDEMVVMIEELGFQVVVTRP---------------------NRMSNLNKFTEVVNSCSV 236 (356)
Q Consensus 182 ~pr~~~i~--R~~~R~i~--N~~ev~~~l~~~gf~v~~~~~---------------------~~~~~~~eq~~~~~~adv 236 (356)
+|.+++.- |...|++- +-.++++.|.+.|++++.+-. ...+++.|-+++++.||+
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 44454443 22236664 566888777766888765421 114789999999999999
Q ss_pred EEEeehhhhhhhcccCCCcEEEEEecC
Q 041159 237 LVGAHGAGLTTELFLPAGAVMVQVVPL 263 (356)
Q Consensus 237 lvg~HGAgLtn~lF~~pgs~viEi~P~ 263 (356)
+||+= +|.+|+-- --|+-+|-|+..
T Consensus 265 ~i~~D-sG~~HlAa-a~g~P~v~lfg~ 289 (349)
T 3tov_A 265 LITND-SGPMHVGI-SQGVPIVALYGP 289 (349)
T ss_dssp EEEES-SHHHHHHH-TTTCCEEEECSS
T ss_pred EEECC-CCHHHHHH-hcCCCEEEEECC
Confidence 99983 44445432 246667777744
No 32
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=35.05 E-value=45 Score=31.97 Aligned_cols=62 Identities=10% Similarity=0.217 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhhhcc
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTTELF 250 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn~lF 250 (356)
.+.|||+=...+ -.+||.+++++.+.+|+..+++ ...-+| .+.+.||+.||-+++-+|-.+.
T Consensus 280 lksVFIATDa~~---~~~ELk~~L~~~~v~vv~~~pe--~a~ID~-~I~~~A~~FIGN~~SSFSa~I~ 341 (362)
T 3zy2_A 280 AKSVFVASDKDH---MIDEINEALKPYEIEAHRQEPD--DMYTSL-AIMGRADLFVGNCVSTFSHIVK 341 (362)
T ss_dssp CSEEEEEESSCC---CHHHHHHHHGGGTCCEECCSSC--CHHHHH-HHHHHSSEEEECTTCHHHHHHH
T ss_pred CcEEEEecCCHH---HHHHHHHHhhccCceEEEeCCc--hhHHHH-HHHHhCCEeecCccccccHHHH
Confidence 466788766555 4678888888778888776664 455666 6889999999999999987654
No 33
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=34.78 E-value=69 Score=28.03 Aligned_cols=63 Identities=16% Similarity=0.053 Sum_probs=42.2
Q ss_pred CCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCE-EEEeehhh
Q 041159 180 REKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSV-LVGAHGAG 244 (356)
Q Consensus 180 ~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~adv-lvg~HGAg 244 (356)
..++++++..=.+.-.=+.-.-+..+|+..||+|+.+-. +.|.++.++.....+. +||+-|++
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~--~vp~e~iv~~~~~~~~d~v~l~~S~ 153 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV--DVLNENVVEEAAKHKGEKVLLVGSA 153 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS--SCCHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC--CCCHHHHHHHHHHcCCCEEEEEchh
Confidence 456788877655555555555567888999999988655 4899988777754433 45663433
No 34
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=34.36 E-value=51 Score=31.79 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=24.0
Q ss_pred HHHHhcCCEEEEee---hhh----hhhhcc--cCCCcEEEEEe
Q 041159 228 TEVVNSCSVLVGAH---GAG----LTTELF--LPAGAVMVQVV 261 (356)
Q Consensus 228 ~~~~~~advlvg~H---GAg----Ltn~lF--~~pgs~viEi~ 261 (356)
.+.+..|||+|+.. |+. ++.-++ |+||+++|-+-
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 35779999999864 321 233333 89999999886
No 35
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=34.15 E-value=59 Score=28.27 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhh
Q 041159 182 KPVLIFISRGNS--RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTT 247 (356)
Q Consensus 182 ~pr~~~i~R~~~--R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn 247 (356)
.++++||.=... ..--|.+.+.+++++.|+++.+++... .+.++..+.+.+||.|+=+=|...+-
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~~ad~I~l~GG~~~~l 93 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-ESLGEITTKLRKNDFIYVTGGNTFFL 93 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHHHSSEEEECCSCHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHHhCCEEEECCCCHHHH
Confidence 479999973322 122467788999999999998876542 46667778889999998666665543
No 36
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=34.05 E-value=38 Score=28.68 Aligned_cols=52 Identities=10% Similarity=0.236 Sum_probs=32.1
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC---EEEEe
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCS---VLVGA 240 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~ad---vlvg~ 240 (356)
|++++|+-.+ .+ ...+++++++.|.+++++... .+.++..+.+...+ +|+++
T Consensus 1 ~~i~iiDn~~--s~--~~~i~~~l~~~G~~~~v~~~~--~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 1 ADILLLDNID--SF--TWNLADQLRTNGHNVVIYRNH--IPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp CEEEEEECSC--SS--HHHHHHHHHHTTCEEEEEETT--SCSHHHHHHHTTCSSEEEEECC
T ss_pred CcEEEEECCc--cH--HHHHHHHHHHCCCeEEEEECC--CCHHHHHHHhhhccCCeEEECC
Confidence 5788888222 22 234578888899998887653 45555545555444 66655
No 37
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=33.83 E-value=1.3e+02 Score=29.95 Aligned_cols=49 Identities=31% Similarity=0.452 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHc---CCEEEEEc
Q 041159 161 KRFLREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEEL---GFQVVVTR 217 (356)
Q Consensus 161 ~~~l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~---gf~v~~~~ 217 (356)
+..+++.++++. .++.|.+++++|-..+ -|.+.++++++++ +.+++++-
T Consensus 312 k~~l~~~~gl~~------d~~~p~i~~vgRl~~~--Kg~~~li~a~~~l~~~~~~l~l~G 363 (536)
T 3vue_A 312 KEALQAEAGLPV------DRKIPLIAFIGRLEEQ--KGPDVMAAAIPELMQEDVQIVLLG 363 (536)
T ss_dssp HHHHHHHTTSCC------CTTSCEEEEECCBSGG--GCHHHHHHHHHHHTTSSCEEEEEC
T ss_pred HHHHHHhcCCCC------CCCCcEEEEEeecccc--CChHHHHHHHHHhHhhCCeEEEEe
Confidence 345677777764 2578899999987654 4777788777653 66666553
No 38
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.83 E-value=1.1e+02 Score=25.20 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=39.1
Q ss_pred CCCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEE
Q 041159 180 REKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVN--SCSVL 237 (356)
Q Consensus 180 ~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~--~advl 237 (356)
.++|++++..=.+.-.=+...-+..+|+..||+|+.+.. ..|.++.++.+. ++|++
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~--~~p~e~lv~aa~~~~~diV 73 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL--RQTPEQVAMAAVQEDVDVI 73 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS--BCCHHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEE
Confidence 467788776655554445555566788899999987654 478888888776 55544
No 39
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=33.59 E-value=33 Score=28.42 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHH---HHHHHhcCC--------EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNK---FTEVVNSCS--------VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~e---q~~~~~~ad--------vlvg~HGAgLtn~lF~~pg 254 (356)
..+.+.+.++++||+|.+.+ +++..| .++-++.-| ++|--||- -+.++...|
T Consensus 42 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~--~g~i~g~D~ 104 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCC--CCEEEEeCC
Confidence 33467788888999998765 255444 444444444 45566775 355665555
No 40
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=31.52 E-value=1.1e+02 Score=28.66 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=55.4
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEcCC---CCCCHHHHHH----------HHhcCCEEEEeehhhhhhhcccCCCcEEEEE
Q 041159 194 RKFLNEDEMVVMIEELGFQVVVTRPN---RMSNLNKFTE----------VVNSCSVLVGAHGAGLTTELFLPAGAVMVQV 260 (356)
Q Consensus 194 R~i~N~~ev~~~l~~~gf~v~~~~~~---~~~~~~eq~~----------~~~~advlvg~HGAgLtn~lF~~pgs~viEi 260 (356)
||+-=-.+-++.|.+.|++|.+-... ...+=+|-.+ .+ +||+||++-----...-.+++|..++-.
T Consensus 14 ~Rv~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~vk~p~~~~~~~l~~~~~~~~~ 92 (369)
T 2eez_A 14 NRVALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKVKEPLPEEYGFLREGLILFTY 92 (369)
T ss_dssp CCCSSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECSSCCCGGGGGGCCTTCEEEEC
T ss_pred ceeCcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEECCCCHHHHhhcCCCcEEEEE
Confidence 55554456667777789999763211 1233222222 55 8999998765443445567899888755
Q ss_pred ecCCCcCCCCCchHHHHhhcCCeEEEEEecC
Q 041159 261 VPLGLEWGSTYYFGVPAREMGVQYLEYKTEP 291 (356)
Q Consensus 261 ~P~~~~~~~~~~y~~lA~~~gl~Y~~y~~~~ 291 (356)
...+. ....-..+...|+..++|....
T Consensus 93 ~~~~~----~~~~~~~l~~~gi~~ia~e~~~ 119 (369)
T 2eez_A 93 LHLAA----DRGLTEAMLRSGVTGIAYETVQ 119 (369)
T ss_dssp CCGGG----CHHHHHHHHHHTCEEEEGGGCC
T ss_pred ecccC----CHHHHHHHHHCCCeEEEeeccc
Confidence 44331 2233444567789998876543
No 41
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=31.43 E-value=34 Score=31.26 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCH---HHHHHHHhc-----CCE---EEEeehhh
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNL---NKFTEVVNS-----CSV---LVGAHGAG 244 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~---~eq~~~~~~-----adv---lvg~HGAg 244 (356)
..+.|.+.++++||+|.+.+ +++. .+.++-++. +|. ++.-||-.
T Consensus 47 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~h~~~D~~vv~ilSHG~~ 101 (277)
T 1nw9_B 47 DCEKLRRRFSSLHFMVEVKG---DLTAKKMVLALLELARQDHGALDCCVVVILSHGCQ 101 (277)
T ss_dssp HHHHHHHHHHHTTEEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEc---CCCHHHHHHHHHHHHHhhcccCCeEEEEEeCCCCc
Confidence 44567788899999998765 2454 444444432 332 44459864
No 42
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=31.18 E-value=31 Score=29.54 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHH---HHHHHHhcCC--------EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLN---KFTEVVNSCS--------VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~---eq~~~~~~ad--------vlvg~HGAgLtn~lF~~pg 254 (356)
..+.|.+.++++||+|.+.+ +++.. +.++-++.-| ++|--||-. +.++...|
T Consensus 70 D~~~L~~~F~~LgF~V~v~~---dlt~~em~~~l~~~s~~dh~~~dc~vvvilSHG~~--g~I~g~D~ 132 (173)
T 2ql9_A 70 DAEALFKCFRSLGFDVIVYN---DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 132 (173)
T ss_dssp HHHHHHHHHHHHTEEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhhccCCCeEEEeecCCCCC--CEEEEcCC
Confidence 34567788888999998765 25544 4445555555 666778753 56666665
No 43
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=30.87 E-value=38 Score=30.43 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCS--------VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~ad--------vlvg~HGAgLtn~lF~~pg 254 (356)
..+.|.+.++++||+|.+.+--....+.+.++-|+.-| +++.-||- -+.++...+
T Consensus 42 D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D~ 104 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecCC
Confidence 44567788899999998765211123444455554443 45566886 355665554
No 44
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=29.86 E-value=1.1e+02 Score=27.86 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEEEEEcCCCccccCHHHHHHHHHHc--CCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhhh-------hcccCCC
Q 041159 184 VLIFISRGNSRKFLNEDEMVVMIEEL--GFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLTT-------ELFLPAG 254 (356)
Q Consensus 184 r~~~i~R~~~R~i~N~~ev~~~l~~~--gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLtn-------~lF~~pg 254 (356)
++++++|+. -..+++.+.+... +.++...+.+ ++. +.+.++|+||..-.+|+.. .-+++++
T Consensus 153 ~v~i~~R~~----~~a~~la~~~~~~~~~~~i~~~~~~---~l~---~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~ 222 (283)
T 3jyo_A 153 KLQVADLDT----SRAQALADVINNAVGREAVVGVDAR---GIE---DVIAAADGVVNATPMGMPAHPGTAFDVSCLTKD 222 (283)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHHHTSCCEEEECST---THH---HHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTT
T ss_pred EEEEEECCH----HHHHHHHHHHHhhcCCceEEEcCHH---HHH---HHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCC
Confidence 566676553 2234455555443 3455544332 233 4567899999888888753 2256788
Q ss_pred cEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 255 AVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 255 s~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
..|++++-.- ..+.|-..|+..|.+..
T Consensus 223 ~~v~DlvY~P----~~T~ll~~A~~~G~~~~ 249 (283)
T 3jyo_A 223 HWVGDVVYMP----IETELLKAARALGCETL 249 (283)
T ss_dssp CEEEECCCSS----SSCHHHHHHHHHTCCEE
T ss_pred CEEEEecCCC----CCCHHHHHHHHCcCeEe
Confidence 9999987321 24678888999998754
No 45
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=29.54 E-value=75 Score=25.09 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=37.1
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH 241 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H 241 (356)
..+++++.... ..+++.+.+++.|..+.. . ..+-.+-.++++.||++|.+.
T Consensus 32 ~~~l~i~G~g~-----~~~~~~~~~~~~~~~v~~-g---~~~~~~~~~~~~~adv~v~ps 82 (166)
T 3qhp_A 32 DIVLLLKGKGP-----DEKKIKLLAQKLGVKAEF-G---FVNSNELLEILKTCTLYVHAA 82 (166)
T ss_dssp GEEEEEECCST-----THHHHHHHHHHHTCEEEC-C---CCCHHHHHHHHTTCSEEEECC
T ss_pred CeEEEEEeCCc-----cHHHHHHHHHHcCCeEEE-e---ecCHHHHHHHHHhCCEEEECC
Confidence 34677777543 357788888888885554 2 377788889999999998654
No 46
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=29.52 E-value=37 Score=25.08 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.1
Q ss_pred ccccCHHHHHHHHHHcCCEEE
Q 041159 194 RKFLNEDEMVVMIEELGFQVV 214 (356)
Q Consensus 194 R~i~N~~ev~~~l~~~gf~v~ 214 (356)
++=+|.+++++.|++.||+|+
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 444789999999999999986
No 47
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=29.26 E-value=53 Score=32.31 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=36.5
Q ss_pred HHHHHHHcCCEEEEEcCCC------------CCCHHHHHHHHhcCCEEEEeeh-hhhhh-hc--ccCCCcEEEEEe
Q 041159 202 MVVMIEELGFQVVVTRPNR------------MSNLNKFTEVVNSCSVLVGAHG-AGLTT-EL--FLPAGAVMVQVV 261 (356)
Q Consensus 202 v~~~l~~~gf~v~~~~~~~------------~~~~~eq~~~~~~advlvg~HG-AgLtn-~l--F~~pgs~viEi~ 261 (356)
+++.|+.+|.+|++.+.+. ..++. +++..|||+|..-| .++-| -. -|++|+.|+-+-
T Consensus 235 vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Le---eal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 235 CCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLN---EVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMG 307 (435)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHH---HHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHH---HHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEec
Confidence 5566777788877765321 12333 35779999999755 23333 33 389999998664
No 48
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=28.39 E-value=69 Score=29.27 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=43.7
Q ss_pred CCcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHH---HHHhc------CC---EEEEeehhhhhhh
Q 041159 181 EKPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFT---EVVNS------CS---VLVGAHGAGLTTE 248 (356)
Q Consensus 181 ~~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~---~~~~~------ad---vlvg~HGAgLtn~ 248 (356)
++-..+||++.+ ...+.|.+.++++||+|.+.+ +++..|-. +-++. +| ++|--||- -+.
T Consensus 42 ~rG~~LIinn~~----~D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~--~g~ 112 (272)
T 3h11_A 42 PLGICLIIDCIG----NETELLRDTFTSLGYEVQKFL---HLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGG--SQS 112 (272)
T ss_dssp SSEEEEEEESSC----CCCSHHHHHHHHHTEEEEEEE---SCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEE--TTE
T ss_pred cceEEEEECCch----HHHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCC--CCe
Confidence 344678888876 356678899999999998865 35544443 33333 22 46777886 477
Q ss_pred cccCCCc
Q 041159 249 LFLPAGA 255 (356)
Q Consensus 249 lF~~pgs 255 (356)
++...|.
T Consensus 113 i~g~D~~ 119 (272)
T 3h11_A 113 VYGVDQT 119 (272)
T ss_dssp ECBTSCC
T ss_pred EEEEcCC
Confidence 7776664
No 49
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=28.37 E-value=45 Score=30.49 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCS--------VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~ad--------vlvg~HGAgLtn~lF~~pg 254 (356)
..+.|.+.++++||+|.+.+--....+.+.++-|++-| +++.-||- -|.++...+
T Consensus 57 Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~--~~~i~~~D~ 119 (272)
T 1m72_A 57 DSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE--LGMLYAKDT 119 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEECSSS
T ss_pred HHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CCEEEecCC
Confidence 34467788899999998765311123445555555543 45566884 577776666
No 50
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=27.44 E-value=56 Score=28.10 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH---hcCC--------EEEEeehhhhhhhcccCCCc
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV---NSCS--------VLVGAHGAGLTTELFLPAGA 255 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~---~~ad--------vlvg~HGAgLtn~lF~~pgs 255 (356)
..+.|.+.++++||+|.+.+ +++..|-.+.+ +.-| ++|--||- -+.++...|.
T Consensus 70 D~~~L~~~F~~LGF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vvvilSHG~--~g~I~g~D~~ 133 (179)
T 3p45_A 70 DRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTVSHADADCFVCVFLSHGE--GNHIYAYDAK 133 (179)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSCCTTBSCEEEEEESCEE--TTEEECSSSE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHhhhhcCCCCEEEEEEeccCC--CCEEEEECCE
Confidence 34567788889999998865 35655544444 3333 45667776 4677777665
No 51
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=27.25 E-value=1.3e+02 Score=27.28 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=35.9
Q ss_pred HHHhcCCEEEEeehhhhhhh---cccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 229 EVVNSCSVLVGAHGAGLTTE---LFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 229 ~~~~~advlvg~HGAgLtn~---lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
+++.+||+||..-+.++.|- -.|+||+.+|-+.--. ....+ ..++..|..++
T Consensus 211 ~~l~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~----~~~~~-~~a~~~G~~~i 265 (300)
T 2rir_A 211 EHVKDIDICINTIPSMILNQTVLSSMTPKTLILDLASRP----GGTDF-KYAEKQGIKAL 265 (300)
T ss_dssp HHSTTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTT----CSBCH-HHHHHHTCEEE
T ss_pred HHhhCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCC----CCcCH-HHHHHCCCEEE
Confidence 45689999999888776543 2389999999875211 11225 67778888765
No 52
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=27.10 E-value=1.6e+02 Score=26.55 Aligned_cols=48 Identities=27% Similarity=0.209 Sum_probs=35.6
Q ss_pred hcCCEEEEeehhhhhhh------cccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCe
Q 041159 232 NSCSVLVGAHGAGLTTE------LFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 232 ~~advlvg~HGAgLtn~------lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.++|+||..-.+|+..- =++++++.|+++.-.- ..+.|-..|+..|++
T Consensus 180 ~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P----~~T~ll~~A~~~G~~ 233 (272)
T 3pwz_A 180 QSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGK----GLTPFLRLAREQGQA 233 (272)
T ss_dssp CCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSC----CSCHHHHHHHHHSCC
T ss_pred cCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCC----CCCHHHHHHHHCCCC
Confidence 68999999998887532 2467889999876221 246788889999987
No 53
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=26.91 E-value=78 Score=25.83 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=34.3
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEE-EcCCCCCCHHHHHHHHhcCCEEEEee
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVV-TRPNRMSNLNKFTEVVNSCSVLVGAH 241 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~-~~~~~~~~~~eq~~~~~~advlvg~H 241 (356)
.+++++..... -..+++.+.+++.+ .|.. .. ..+-.|..++++.||++|.+.
T Consensus 71 ~~l~i~G~~~~---~~~~~l~~~~~~~~-~v~~~~g---~~~~~~~~~~~~~ad~~l~ps 123 (200)
T 2bfw_A 71 MRFIIIGKGDP---ELEGWARSLEEKHG-NVKVITE---MLSREFVRELYGSVDFVIIPS 123 (200)
T ss_dssp EEEEEECCBCH---HHHHHHHHHHHHCT-TEEEECS---CCCHHHHHHHHTTCSEEEECC
T ss_pred eEEEEECCCCh---HHHHHHHHHHHhcC-CEEEEec---cCCHHHHHHHHHHCCEEEECC
Confidence 46777765320 12355667777777 5554 33 367788899999999998755
No 54
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=26.62 E-value=2.6e+02 Score=25.60 Aligned_cols=66 Identities=18% Similarity=0.358 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHH--hcCCEEEEeehhhhhhhcc----cCCCcEEEEEecCC
Q 041159 199 EDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVV--NSCSVLVGAHGAGLTTELF----LPAGAVMVQVVPLG 264 (356)
Q Consensus 199 ~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~--~~advlvg~HGAgLtn~lF----~~pgs~viEi~P~~ 264 (356)
.+++.+.|++.|+++.+...+..-...++++.. .++|+||.+=|=|--|.+- -.....-|=++|.|
T Consensus 44 ~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 44 LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhCCCCCcEEEecCC
Confidence 357888889999988776543222344544433 4679999998887655433 23334456689998
No 55
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=26.58 E-value=1.1e+02 Score=25.69 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=45.0
Q ss_pred CCCcEEEEEEcCCC-cccc--CHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHHh---cCCEEEEeehhhhhh
Q 041159 180 REKPVLIFISRGNS-RKFL--NEDEMVVMIEELGFQVVVTR--PNRMSNLNKFTEVVN---SCSVLVGAHGAGLTT 247 (356)
Q Consensus 180 ~~~pr~~~i~R~~~-R~i~--N~~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~~---~advlvg~HGAgLtn 247 (356)
-+++|+-+|+=.+. -++. |-.-+.+.|++.|+++.... +++.-.+.+.++... ++|+||.-=|.|.+.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 45678877775544 3444 44567789999999886422 332234666665543 399999999988775
No 56
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=25.83 E-value=1.7e+02 Score=27.50 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=52.5
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEcCC---CCCCHHHHH-----------HHHhcCCEEEEeehhhhhhhcccCCCcEEEE
Q 041159 194 RKFLNEDEMVVMIEELGFQVVVTRPN---RMSNLNKFT-----------EVVNSCSVLVGAHGAGLTTELFLPAGAVMVQ 259 (356)
Q Consensus 194 R~i~N~~ev~~~l~~~gf~v~~~~~~---~~~~~~eq~-----------~~~~~advlvg~HGAgLtn~lF~~pgs~viE 259 (356)
||+-=-.+-++.|.+.|++|.+-... ...+=+|-. +.+.+||+|+++-----.-...+.+|..++=
T Consensus 14 ~Rv~ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~vk~p~~~e~~~l~~~~~l~~ 93 (377)
T 2vhw_A 14 FRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILFT 93 (377)
T ss_dssp CCCSCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEECSSCCCGGGGGGCCTTCEEEE
T ss_pred cccCcCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEEeCCCChHHHhhcCCCCEEEE
Confidence 55554556667777789999763211 123322222 4567899999887554445567788876664
Q ss_pred EecCCCcCCCCCchHHHHhhcCCeEEEEE
Q 041159 260 VVPLGLEWGSTYYFGVPAREMGVQYLEYK 288 (356)
Q Consensus 260 i~P~~~~~~~~~~y~~lA~~~gl~Y~~y~ 288 (356)
...... ....-..+...|++.+.|.
T Consensus 94 ~~~~~~----~~~~l~~l~~~gi~~ia~e 118 (377)
T 2vhw_A 94 FLHLAA----SRACTDALLDSGTTSIAYE 118 (377)
T ss_dssp CCCGGG----CHHHHHHHHHHTCEEEEGG
T ss_pred EecccC----CHHHHHHHHHcCCeEEEee
Confidence 432221 1223333456688887764
No 57
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=25.50 E-value=52 Score=29.79 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCS--------VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~ad--------vlvg~HGAgLtn~lF~~pg 254 (356)
..+.|.+.++++||+|.+.+--....+.+.++-++.-| +++.-||-. +.++...+
T Consensus 45 D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~~--g~i~~~D~ 107 (259)
T 3sir_A 45 DCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEM--GYIYAKDT 107 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEEEEEEEECTTC--CCCCCTTH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEecCCCC--CeEEeCCC
Confidence 45567789999999998765211123445555555443 456668875 66655444
No 58
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=25.46 E-value=46 Score=30.48 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=32.7
Q ss_pred hcCCEEEEeehhhhhhh------cccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCe
Q 041159 232 NSCSVLVGAHGAGLTTE------LFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQ 283 (356)
Q Consensus 232 ~~advlvg~HGAgLtn~------lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~ 283 (356)
.++|+||..-++|+..- =++++|+.|+.+.-.- ..+.|-..|+..|++
T Consensus 186 ~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P----~~T~ll~~A~~~G~~ 239 (281)
T 3o8q_A 186 QSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGK----GYTVFNQWARQHGCA 239 (281)
T ss_dssp SCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCS----SCCHHHHHHHHTTCS
T ss_pred CCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCC----ccCHHHHHHHHCCCC
Confidence 68999998888876431 2356788888876221 245677889999986
No 59
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=25.37 E-value=64 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHH---HHHHHHhc-----CC---EEEEeehhhhhhhcccCCCc
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLN---KFTEVVNS-----CS---VLVGAHGAGLTTELFLPAGA 255 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~---eq~~~~~~-----ad---vlvg~HGAgLtn~lF~~pgs 255 (356)
..+.|.+.++++||+|.+.+ +++.. +.++-|+. +| +++.-||-. |.++...|.
T Consensus 50 D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~v~~ilSHG~~--g~i~g~D~~ 113 (271)
T 3h11_B 50 DAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDGQ 113 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTSC
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEcCCcC--CEEEecCCC
Confidence 34567788899999998765 25544 44444433 33 344558863 777776663
No 60
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=25.03 E-value=71 Score=24.66 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=29.7
Q ss_pred EEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEE
Q 041159 184 VLIFISRGNS-RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLV 238 (356)
Q Consensus 184 r~~~i~R~~~-R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlv 238 (356)
-++|-|+.++ +++.. .+.+.+++.|+++..++..+ .+. ..+.++|.+|
T Consensus 3 ~iiy~S~tGnT~~~a~--~i~~~l~~~g~~v~~~~~~~-~~~----~~l~~~d~vi 51 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMAN--EIEAAVKAAGADVESVRFED-TNV----DDVASKDVIL 51 (137)
T ss_dssp EEEECCSSSHHHHHHH--HHHHHHHHTTCCEEEEETTS-CCH----HHHHTCSEEE
T ss_pred EEEEECCCChHHHHHH--HHHHHHHhCCCeEEEEEccc-CCH----HHHhcCCEEE
Confidence 3566777664 55543 45566666788888776653 443 2356778755
No 61
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=23.96 E-value=1.1e+02 Score=25.51 Aligned_cols=39 Identities=8% Similarity=0.336 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCEEEEEcCCC-CCC-----HHHHHHHHhcCCEEEEe
Q 041159 200 DEMVVMIEELGFQVVVTRPNR-MSN-----LNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 200 ~ev~~~l~~~gf~v~~~~~~~-~~~-----~~eq~~~~~~advlvg~ 240 (356)
+++.+.|++.|++|.. |.+ ..+ +..=++.+.+||++|+.
T Consensus 30 ~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ 74 (161)
T 2f62_A 30 NKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIAD 74 (161)
T ss_dssp HHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 5677888889998644 432 112 33336788899998876
No 62
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=23.89 E-value=67 Score=29.98 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCC--------EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCS--------VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~ad--------vlvg~HGAgLtn~lF~~pg 254 (356)
..+.|.+.++++||+|.+.+--....+.+.++-|+..| +++.-||- -|.++...+
T Consensus 85 Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ilSHG~--~g~i~g~D~ 147 (310)
T 2nn3_C 85 DSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGE--LGMLYAKDT 147 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEEEEEEEE--TTEEECSSC
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CCEEEecCC
Confidence 34467788899999998765211123444455554443 34555885 577776665
No 63
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=23.79 E-value=3.1e+02 Score=24.48 Aligned_cols=69 Identities=12% Similarity=0.206 Sum_probs=40.1
Q ss_pred HHHHHHhCCCccCcccccCCCcEEEEEEcCCCccccCHHHHHHHHHHc-----CCEEEEEcCCC----------------
Q 041159 162 RFLREAYSLKIKNVSEIQREKPVLIFISRGNSRKFLNEDEMVVMIEEL-----GFQVVVTRPNR---------------- 220 (356)
Q Consensus 162 ~~l~~~~~l~~~~~~~~~~~~pr~~~i~R~~~R~i~N~~ev~~~l~~~-----gf~v~~~~~~~---------------- 220 (356)
..+++.++++ ..++.++++.|-.. --|.+.+++++++. .++++++-.+.
T Consensus 186 ~~~~~~~~~~--------~~~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v 255 (394)
T 3okp_A 186 SATRKKLGFT--------DTTPVIACNSRLVP--RKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNV 255 (394)
T ss_dssp HHHHHHTTCC--------TTCCEEEEESCSCG--GGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGE
T ss_pred HHHHHhcCCC--------cCceEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeE
Confidence 4455666543 34578999988643 34677777766542 45665543210
Q ss_pred ----CCCHHHHHHHHhcCCEEEEe
Q 041159 221 ----MSNLNKFTEVVNSCSVLVGA 240 (356)
Q Consensus 221 ----~~~~~eq~~~~~~advlvg~ 240 (356)
..+-+|-.++++.||++|.+
T Consensus 256 ~~~g~~~~~~~~~~~~~ad~~v~p 279 (394)
T 3okp_A 256 KFLGRLEYQDMINTLAAADIFAMP 279 (394)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEEC
T ss_pred EEcCCCCHHHHHHHHHhCCEEEec
Confidence 13345666667777777654
No 64
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.75 E-value=80 Score=26.36 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=43.8
Q ss_pred CCCcEEEEEEcCCC-----ccccCHHHHHHHHHHcCCEEEEE--cCCCCCCHHHHHHHH--hcCCEEEEeehhhhhh
Q 041159 180 REKPVLIFISRGNS-----RKFLNEDEMVVMIEELGFQVVVT--RPNRMSNLNKFTEVV--NSCSVLVGAHGAGLTT 247 (356)
Q Consensus 180 ~~~pr~~~i~R~~~-----R~i~N~~ev~~~l~~~gf~v~~~--~~~~~~~~~eq~~~~--~~advlvg~HGAgLtn 247 (356)
-++||+.+|+=.+. ..=.|-.-+.+.|++.|+++... -+++ -.+.+.++.. .++|+||.-=|.|.+-
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 35678877775442 33446667889999999988531 2443 4566666544 3799999998888765
No 65
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=23.20 E-value=79 Score=26.96 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=25.6
Q ss_pred EEEEEEcCCC-----cc--ccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHH
Q 041159 184 VLIFISRGNS-----RK--FLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTE 229 (356)
Q Consensus 184 r~~~i~R~~~-----R~--i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~ 229 (356)
..++|.-..- |. -...+.|.+.++++||+|.+.. +++..|-.+
T Consensus 45 ~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~---dlt~~em~~ 94 (178)
T 2h54_A 45 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKK---NLTASDMTT 94 (178)
T ss_dssp EEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHH
T ss_pred EEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHH
Confidence 4566665431 32 2334467788899999998764 255444433
No 66
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=23.19 E-value=50 Score=30.77 Aligned_cols=55 Identities=15% Similarity=0.343 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcC-----C---EEEEeehhhhhhhcccCCC
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSC-----S---VLVGAHGAGLTTELFLPAG 254 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~a-----d---vlvg~HGAgLtn~lF~~pg 254 (356)
..+.|.+.++++||+|.+..--....+.+.++-++.- | +++.-||-- |.++...+
T Consensus 95 Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv~ilsHG~~--~~i~g~D~ 157 (305)
T 1f1j_A 95 DAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 157 (305)
T ss_dssp HHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEEEEEEEEESCEET--TEEECSSS
T ss_pred HHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC--CeEEecCC
Confidence 4456778889999999876421112233444444433 3 455568853 66666555
No 67
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=22.76 E-value=57 Score=29.88 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHcCCEEEEEcCCCCCCHHHH---HHHHhcC-----C---EEEEeehhhhhhhcccCCCc
Q 041159 198 NEDEMVVMIEELGFQVVVTRPNRMSNLNKF---TEVVNSC-----S---VLVGAHGAGLTTELFLPAGA 255 (356)
Q Consensus 198 N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq---~~~~~~a-----d---vlvg~HGAgLtn~lF~~pgs 255 (356)
..+.|.+.++++||+|.+.+ +++..|- ++-++.. | +++.-||-. +.++...|.
T Consensus 47 D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~vv~ilSHG~~--g~i~g~D~~ 110 (278)
T 3od5_A 47 DRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEG--NHIYAYDAK 110 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTBSCEEEEEESCEET--TEEECSSSE
T ss_pred HHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHhhcccCCCEEEEEEECCCCC--CEEEEeCCe
Confidence 44567788899999998865 3554443 3334332 3 345558863 777776664
No 68
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=22.20 E-value=28 Score=34.96 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCcEEEEEEcCCC--ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeeh-hhhhhhcccC--CCc
Q 041159 181 EKPVLIFISRGNS--RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHG-AGLTTELFLP--AGA 255 (356)
Q Consensus 181 ~~pr~~~i~R~~~--R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HG-AgLtn~lF~~--pgs 255 (356)
.++++-+|.=..- ..--|..|+.+.|++.|.+++.+-+. ..++ ++++-+.+|+.-|.++- +|..-.-+|. =|.
T Consensus 152 ~~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pg-g~t~-~ei~~~~~A~~niv~~~~~g~~~A~~Le~r~Gi 229 (525)
T 3aek_B 152 PEVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPL-GASP-DDLRKLGQAHFNVLMYPETGESAARHLERACKQ 229 (525)
T ss_dssp SSCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEET-TCCH-HHHHTGGGSSEEEECCHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCC-CCCH-HHHHhhccCCEEEEEChhhHHHHHHHHHHHcCC
Confidence 4567888764321 22345678889999999999875454 2554 55677888888888763 4444444443 356
Q ss_pred EEEEEecCCCcCCCCCchHHHHhhcCCeE
Q 041159 256 VMVQVVPLGLEWGSTYYFGVPAREMGVQY 284 (356)
Q Consensus 256 ~viEi~P~~~~~~~~~~y~~lA~~~gl~Y 284 (356)
-.++..|.|++. ...+...+|+.+|...
T Consensus 230 P~i~~~PiG~~~-T~~~Lr~ia~~~g~~~ 257 (525)
T 3aek_B 230 PFTKIVPIGVGA-TRDFLAEVSKITGLPV 257 (525)
T ss_dssp CBCCCCCCSHHH-HHHHHHHHHHHHCCCC
T ss_pred CceecCCcCHHH-HHHHHHHHHHHHCCCH
Confidence 666678998542 3458899999999865
No 69
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=21.84 E-value=46 Score=30.31 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=44.5
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEee-hh---------hhhhhcccC
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAH-GA---------GLTTELFLP 252 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~H-GA---------gLtn~lF~~ 252 (356)
+|++++. ++.-=...+.+.++|++.||+|.++++.. . .+....+++.|+||=.- ++ +|... ..
T Consensus 5 ~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~~~-~--~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~y--V~ 77 (259)
T 3rht_A 5 TRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPSHV-G--LDVGELLAKQDLVILSDYPAERMTAQAIDQLVTM--VK 77 (259)
T ss_dssp -CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECTTS-C--BCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHHH--HH
T ss_pred ceEEEEC--CCCchhHHHHHHHHHHhCCceEEEecccc-c--ccChhHHhcCCEEEEcCCccccCCHHHHHHHHHH--HH
Confidence 4778884 32322234557789999999999987652 2 22234678999998663 22 33333 34
Q ss_pred CCcEEEEEe
Q 041159 253 AGAVMVQVV 261 (356)
Q Consensus 253 pgs~viEi~ 261 (356)
.|..+|=+-
T Consensus 78 ~GGgLi~~g 86 (259)
T 3rht_A 78 AGCGLVMLG 86 (259)
T ss_dssp TTCEEEEEC
T ss_pred hCCeEEEec
Confidence 688888554
No 70
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=21.74 E-value=2.6e+02 Score=25.35 Aligned_cols=133 Identities=12% Similarity=0.181 Sum_probs=77.0
Q ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCC-EEEEEcCCC-----------CCCHHHHHHHHhcCCEEEEeehhhhhh---
Q 041159 183 PVLIFISRGNSRKFLNEDEMVVMIEELGF-QVVVTRPNR-----------MSNLNKFTEVVNSCSVLVGAHGAGLTT--- 247 (356)
Q Consensus 183 pr~~~i~R~~~R~i~N~~ev~~~l~~~gf-~v~~~~~~~-----------~~~~~eq~~~~~~advlvg~HGAgLtn--- 247 (356)
.+++++.-.+. -..++..|.+.|. +|.++.-.. ..++.+.-+ + ++|+||..-.+|+..
T Consensus 123 k~vlvlGaGGa-----araia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~ 195 (282)
T 3fbt_A 123 NICVVLGSGGA-----ARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEG 195 (282)
T ss_dssp SEEEEECSSTT-----HHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTT
T ss_pred CEEEEECCcHH-----HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCc
Confidence 36777765543 2245566666777 666654210 011222212 3 899999988888642
Q ss_pred -----hcccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEEEEEecCCCCcccccCCCCCCcccCCCCccchhhHHHH
Q 041159 248 -----ELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYLEYKTEPEESTLSETYSRDDPIITDPASLFAKDYFAAR 322 (356)
Q Consensus 248 -----~lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~~y~~~~~essl~~~~~~~~~~~~dP~~~~~~gw~~~~ 322 (356)
.-++++++.|++++-.- ..+.|-..|+..|.+.. + |.+- .-.||-.. .
T Consensus 196 ~~pi~~~~l~~~~~v~DlvY~P----~~T~ll~~A~~~G~~~~--------~------Gl~M--------Lv~Qa~~~-f 248 (282)
T 3fbt_A 196 ESPVDKEVVAKFSSAVDLIYNP----VETLFLKYARESGVKAV--------N------GLYM--------LVSQAAAS-E 248 (282)
T ss_dssp CCSSCHHHHTTCSEEEESCCSS----SSCHHHHHHHHTTCEEE--------C------SHHH--------HHHHHHHH-H
T ss_pred cCCCCHHHcCCCCEEEEEeeCC----CCCHHHHHHHHCcCeEe--------C------cHHH--------HHHHHHHH-H
Confidence 12357889999986221 24688899999998754 1 1100 01123221 2
Q ss_pred hhhcCCccEEEehHHHHHHHHHHHHHhhhc
Q 041159 323 AVYIDAQNLKINLTRFRQTIVQAMEHIRMS 352 (356)
Q Consensus 323 ~~yl~~qnv~vd~~~f~~~L~~a~~~l~~~ 352 (356)
+.+ .....|.+.+++.+.+..+.+++.
T Consensus 249 ~lw---tg~~~~~~~~~~~~~~~~~~~~~~ 275 (282)
T 3fbt_A 249 EIW---NDISIDEIIVDEIFEVLEEKIKSE 275 (282)
T ss_dssp HHH---HTCCCCHHHHHHHHHHHHHHHHC-
T ss_pred HHH---cCCCCCHHHHHHHHHHHHHhhhcc
Confidence 233 235678888888888887777653
No 71
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.60 E-value=1.5e+02 Score=24.61 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCC-cccc--CHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHHH-h--cCCEEEEeehhhhhh
Q 041159 181 EKPVLIFISRGNS-RKFL--NEDEMVVMIEELGFQVVVTR--PNRMSNLNKFTEVV-N--SCSVLVGAHGAGLTT 247 (356)
Q Consensus 181 ~~pr~~~i~R~~~-R~i~--N~~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~~-~--~advlvg~HGAgLtn 247 (356)
++||+-+|+=.+. -++. |-.-+.+.|++.|+++.... +++.-.+.+.++.. . ++|+||.-=|.|.+.
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 86 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITK 86 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSST
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 5678777774443 2444 45567789999999885422 33223466666554 4 799999998887763
No 72
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=21.52 E-value=2.2e+02 Score=24.90 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=53.4
Q ss_pred EEEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCC--CCHHHH--------HHHHhcCCEEEEeehhhhh----h-
Q 041159 184 VLIFISRGNS-RKFLNEDEMVVMIEELGFQVVVTRPNRM--SNLNKF--------TEVVNSCSVLVGAHGAGLT----T- 247 (356)
Q Consensus 184 r~~~i~R~~~-R~i~N~~ev~~~l~~~gf~v~~~~~~~~--~~~~eq--------~~~~~~advlvg~HGAgLt----n- 247 (356)
++++|...+- | .++..|.+.|++|.+.+.... ..+.++ -++ .++|+||..-+.++. .
T Consensus 118 ~v~iiG~G~~g~------~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~ 190 (263)
T 2d5c_A 118 PALVLGAGGAGR------AVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASP 190 (263)
T ss_dssp CEEEECCSHHHH------HHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCS
T ss_pred eEEEECCcHHHH------HHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCC
Confidence 7888875431 2 245566667777766553210 001111 123 689999999988863 1
Q ss_pred --hcccCCCcEEEEEecCCCcCCCCCchHHHHhhcCCeEE
Q 041159 248 --ELFLPAGAVMVQVVPLGLEWGSTYYFGVPAREMGVQYL 285 (356)
Q Consensus 248 --~lF~~pgs~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~ 285 (356)
.-++++|+.|+++.- + . ..+.+...|+..|.+++
T Consensus 191 l~~~~l~~g~~viD~~~-~--p-~~t~l~~~a~~~g~~~v 226 (263)
T 2d5c_A 191 LPAELFPEEGAAVDLVY-R--P-LWTRFLREAKAKGLKVQ 226 (263)
T ss_dssp SCGGGSCSSSEEEESCC-S--S-SSCHHHHHHHHTTCEEE
T ss_pred CCHHHcCCCCEEEEeec-C--C-cccHHHHHHHHCcCEEE
Confidence 235789999998642 2 1 12236666777888765
No 73
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=21.51 E-value=3.6e+02 Score=25.24 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=52.2
Q ss_pred ccccCHHHHHHHHHHcCCEEEEEcCC---CCCCHHHHH-----------HHHhcCCEEEEeehh-----hhhhhcccCCC
Q 041159 194 RKFLNEDEMVVMIEELGFQVVVTRPN---RMSNLNKFT-----------EVVNSCSVLVGAHGA-----GLTTELFLPAG 254 (356)
Q Consensus 194 R~i~N~~ev~~~l~~~gf~v~~~~~~---~~~~~~eq~-----------~~~~~advlvg~HGA-----gLtn~lF~~pg 254 (356)
||+-=-.+.++.|.+.|++|.+-... ...+=.+-. +.+.+||++|.+.-- .-..+=.+++|
T Consensus 14 ~Rv~l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~~p~~~~~~~~~i~~l~~~ 93 (384)
T 1l7d_A 14 DRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEG 93 (384)
T ss_dssp CCCSCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGGGSCCGGGGSCTT
T ss_pred cccCCCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEecCcccccCCHHHHHhhccC
Confidence 55443445566677789999763211 012322221 467899999998542 11123347888
Q ss_pred cEEEEEecCCCcCCCCCchHHHHhhcCCeEEEEEe
Q 041159 255 AVMVQVVPLGLEWGSTYYFGVPAREMGVQYLEYKT 289 (356)
Q Consensus 255 s~viEi~P~~~~~~~~~~y~~lA~~~gl~Y~~y~~ 289 (356)
..++-....+. ....-..+...|+....|..
T Consensus 94 ~~~i~~~~~~~----~~~~~~~~~~~gi~~~~~e~ 124 (384)
T 1l7d_A 94 AVLMCHLGALT----NRPVVEALTKRKITAYAMEL 124 (384)
T ss_dssp CEEEEECCGGG----CHHHHHHHHHTTCEEEEGGG
T ss_pred CEEEEEecccC----CHHHHHHHHHCCCEEEEecc
Confidence 88885544331 12223445677888776643
No 74
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.27 E-value=1.4e+02 Score=23.88 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=33.6
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHh--cCCEE
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVN--SCSVL 237 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~--~advl 237 (356)
+|++++..=.+--.=+...=+..+|+..||+|+.+.. ..|.++.++... ++|++
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~--~~p~e~~v~~a~~~~~d~v 58 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGV--LSPQELFIKAAIETKADAI 58 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEE--EECHHHHHHHHHHHTCSEE
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEE
Confidence 4565555433333333334455778889999987655 378888777775 55654
No 75
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.13 E-value=89 Score=26.56 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=43.6
Q ss_pred CcEEEEEEcCC-----CccccCHHHHHHHHHHcCCEEEEEc--CCCCCCHHHHHHH-HhcCCEEEEeehhhhhhh
Q 041159 182 KPVLIFISRGN-----SRKFLNEDEMVVMIEELGFQVVVTR--PNRMSNLNKFTEV-VNSCSVLVGAHGAGLTTE 248 (356)
Q Consensus 182 ~pr~~~i~R~~-----~R~i~N~~ev~~~l~~~gf~v~~~~--~~~~~~~~eq~~~-~~~advlvg~HGAgLtn~ 248 (356)
++|+-+|+=.+ .+.=.|-.-+.+.|++.|+++.... +++.-.+.+.++. ..++|+||.-=|.|.|.-
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~ 77 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFD 77 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTT
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcc
Confidence 35666665332 2444566778899999999885432 3322345666543 457999999999998764
No 76
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=21.08 E-value=1.3e+02 Score=28.86 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHH---------------------------------------HHHhcCCEEEEee
Q 041159 201 EMVVMIEELGFQVVVTRPNRMSNLNKFT---------------------------------------EVVNSCSVLVGAH 241 (356)
Q Consensus 201 ev~~~l~~~gf~v~~~~~~~~~~~~eq~---------------------------------------~~~~~advlvg~H 241 (356)
.+++.++.+|.+|++++.. ..-.+|+ +++..+||+|+..
T Consensus 186 ~aa~~a~~~Ga~V~v~D~~--~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~ 263 (401)
T 1x13_A 186 AAIGAANSLGAIVRAFDTR--PEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTA 263 (401)
T ss_dssp HHHHHHHHTTCEEEEECSC--GGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEcCC--HHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECC
Q ss_pred hh-h------hhhhcc--cCCCcEEE
Q 041159 242 GA-G------LTTELF--LPAGAVMV 258 (356)
Q Consensus 242 GA-g------Ltn~lF--~~pgs~vi 258 (356)
|. | ++..++ |+||++++
T Consensus 264 ~~pg~~ap~li~~~~l~~mk~g~vIV 289 (401)
T 1x13_A 264 LIPGKPAPKLITREMVDSMKAGSVIV 289 (401)
T ss_dssp CCTTSCCCCCBCHHHHHTSCTTCEEE
T ss_pred ccCCCCCCeeeCHHHHhcCCCCcEEE
No 77
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=20.42 E-value=95 Score=28.95 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=33.2
Q ss_pred EEEEEcCCC-ccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEE
Q 041159 185 LIFISRGNS-RKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVG 239 (356)
Q Consensus 185 ~~~i~R~~~-R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg 239 (356)
+++.|..++ +++.+ .+.+.+++.|.++.+++.. ..+..+....+.++|.+|=
T Consensus 261 i~~~S~~gnT~~la~--~i~~~l~~~g~~v~~~~~~-~~~~~~~~~~l~~~d~iii 313 (404)
T 2ohh_A 261 VIYDTMHGSTRKMAH--AIAEGAMSEGVDVRVYCLH-EDDRSEIVKDILESGAIAL 313 (404)
T ss_dssp EEECCSSSHHHHHHH--HHHHHHHTTTCEEEEEETT-TSCHHHHHHHHHTCSEEEE
T ss_pred EEEECCChHHHHHHH--HHHHHHHhCCCeEEEEECC-CCCHHHHHHHHHHCCEEEE
Confidence 444454432 44332 3445555568999888776 3678877888899998763
No 78
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=20.24 E-value=2.2e+02 Score=25.94 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=37.9
Q ss_pred CcEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEeehhhhh
Q 041159 182 KPVLIFISRGNSRKFLNEDEMVVMIEELGFQVVVTRPNRMSNLNKFTEVVNSCSVLVGAHGAGLT 246 (356)
Q Consensus 182 ~pr~~~i~R~~~R~i~N~~ev~~~l~~~gf~v~~~~~~~~~~~~eq~~~~~~advlvg~HGAgLt 246 (356)
+-++.++.+.+.. .+++.+.|++.|+++.+.+.. . ..+..+|++|..=|-|..
T Consensus 29 ~mki~iv~~~~~~----~~~l~~~L~~~g~~v~~~~~~--~------~~~~~~DlvIvlGGDGT~ 81 (278)
T 1z0s_A 29 GMRAAVVYKTDGH----VKRIEEALKRLEVEVELFNQP--S------EELENFDFIVSVGGDGTI 81 (278)
T ss_dssp -CEEEEEESSSTT----HHHHHHHHHHTTCEEEEESSC--C------GGGGGSSEEEEEECHHHH
T ss_pred ceEEEEEeCCcHH----HHHHHHHHHHCCCEEEEcccc--c------cccCCCCEEEEECCCHHH
Confidence 3478888886644 778899999999999775432 1 134589999888787743
No 79
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=20.11 E-value=43 Score=30.07 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=36.8
Q ss_pred CCcEEEEEEcC---------CCc------cccCHHHHHHHHHHcCCEEEEEcCCC-CCCHHHHHHHHhcCCEEEEee
Q 041159 181 EKPVLIFISRG---------NSR------KFLNEDEMVVMIEELGFQVVVTRPNR-MSNLNKFTEVVNSCSVLVGAH 241 (356)
Q Consensus 181 ~~pr~~~i~R~---------~~R------~i~N~~ev~~~l~~~gf~v~~~~~~~-~~~~~eq~~~~~~advlvg~H 241 (356)
.+-||+++.|. +-. ---....+.++|++.|++|..+...+ .-+|.+..+.+...|+||=..
T Consensus 9 ~~~~vll~~~sw~~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 9 KKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISD 85 (256)
T ss_dssp --CEEEEEECEEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEES
T ss_pred hhcEEEEecCccceeeEeecccccccccCccccHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeC
Confidence 34599999876 111 22345568889998899998873210 002222235688999999554
Done!