Query 041160
Match_columns 182
No_of_seqs 192 out of 1802
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 5.7E-27 1.2E-31 166.7 11.4 105 75-182 44-148 (150)
2 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3E-24 6.5E-29 146.9 12.8 101 76-178 3-104 (104)
3 PF00085 Thioredoxin: Thioredo 99.9 5.2E-24 1.1E-28 144.7 13.9 103 76-181 1-103 (103)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.3E-24 7.1E-29 148.8 12.4 104 73-178 8-113 (113)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 1.2E-24 2.6E-29 150.2 9.5 98 81-180 2-109 (114)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.7E-24 1.2E-28 144.9 12.4 98 76-177 3-100 (101)
7 cd03065 PDI_b_Calsequestrin_N 99.9 6E-24 1.3E-28 148.7 12.0 104 75-182 10-119 (120)
8 PHA02278 thioredoxin-like prot 99.9 2.5E-23 5.5E-28 142.1 12.9 94 80-177 3-100 (103)
9 cd02999 PDI_a_ERp44_like PDIa 99.9 1.4E-23 2.9E-28 143.0 11.5 93 82-178 7-100 (100)
10 cd02985 TRX_CDSP32 TRX family, 99.9 3.8E-23 8.1E-28 141.5 13.6 97 80-180 2-101 (103)
11 cd02956 ybbN ybbN protein fami 99.9 2.2E-23 4.7E-28 140.6 12.2 95 83-179 2-96 (96)
12 cd03002 PDI_a_MPD1_like PDI fa 99.9 2E-23 4.4E-28 143.7 12.2 103 76-179 2-109 (109)
13 PLN00410 U5 snRNP protein, DIM 99.9 3.6E-23 7.9E-28 148.0 12.7 101 80-181 10-119 (142)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 5.4E-23 1.2E-27 142.6 12.4 101 79-181 9-111 (111)
15 KOG0907 Thioredoxin [Posttrans 99.9 1.1E-22 2.4E-27 139.3 12.5 96 82-181 10-105 (106)
16 COG3118 Thioredoxin domain-con 99.9 6.7E-23 1.5E-27 160.2 12.3 105 76-182 25-130 (304)
17 PRK09381 trxA thioredoxin; Pro 99.9 2.9E-22 6.3E-27 138.2 14.1 105 75-182 4-108 (109)
18 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.3E-22 2.9E-27 139.8 12.3 100 76-178 3-108 (108)
19 PRK10996 thioredoxin 2; Provis 99.9 3.1E-22 6.7E-27 144.1 14.5 104 75-182 36-139 (139)
20 cd02994 PDI_a_TMX PDIa family, 99.9 2.5E-22 5.4E-27 136.6 12.9 99 75-180 2-101 (101)
21 cd02986 DLP Dim1 family, Dim1- 99.9 3.2E-22 7E-27 137.3 12.7 100 81-180 2-109 (114)
22 cd03001 PDI_a_P5 PDIa family, 99.9 5.4E-22 1.2E-26 135.1 13.4 101 76-178 2-102 (103)
23 cd02948 TRX_NDPK TRX domain, T 99.9 6.6E-22 1.4E-26 135.1 13.4 97 79-181 5-102 (102)
24 cd03005 PDI_a_ERp46 PDIa famil 99.9 3.9E-22 8.5E-27 135.5 12.0 98 76-178 2-102 (102)
25 TIGR01126 pdi_dom protein disu 99.9 4.7E-22 1E-26 134.9 12.4 100 79-182 1-102 (102)
26 PTZ00443 Thioredoxin domain-co 99.9 1.3E-21 2.9E-26 150.5 14.5 106 74-181 30-138 (224)
27 cd02950 TxlA TRX-like protein 99.9 1.8E-21 3.9E-26 140.6 12.6 98 82-182 11-110 (142)
28 cd02993 PDI_a_APS_reductase PD 99.9 2.3E-21 5E-26 133.9 12.4 103 75-178 2-109 (109)
29 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 2.3E-21 5.1E-26 132.0 11.8 101 76-178 2-104 (104)
30 TIGR01068 thioredoxin thioredo 99.9 5.9E-21 1.3E-25 129.0 13.3 101 79-182 1-101 (101)
31 cd02962 TMX2 TMX2 family; comp 99.9 5.2E-21 1.1E-25 139.1 13.8 103 74-178 28-148 (152)
32 cd02997 PDI_a_PDIR PDIa family 99.9 3.9E-21 8.3E-26 131.0 12.3 99 76-178 2-104 (104)
33 cd02998 PDI_a_ERp38 PDIa famil 99.9 3.2E-21 6.9E-26 131.4 11.0 101 76-178 2-105 (105)
34 cd02953 DsbDgamma DsbD gamma f 99.9 5E-21 1.1E-25 131.0 11.0 95 82-179 2-104 (104)
35 cd02965 HyaE HyaE family; HyaE 99.9 6.9E-21 1.5E-25 130.7 11.1 97 76-176 12-110 (111)
36 cd02984 TRX_PICOT TRX domain, 99.9 1.9E-20 4.1E-25 126.2 12.6 96 80-178 1-96 (97)
37 cd03000 PDI_a_TMX3 PDIa family 99.9 1.5E-20 3.3E-25 128.6 11.7 94 82-181 7-103 (104)
38 cd02961 PDI_a_family Protein D 99.8 2.2E-20 4.8E-25 125.6 11.5 98 78-178 2-101 (101)
39 cd02949 TRX_NTR TRX domain, no 99.8 7.5E-20 1.6E-24 123.7 12.5 92 85-179 6-97 (97)
40 cd02957 Phd_like Phosducin (Ph 99.8 8.2E-20 1.8E-24 127.0 12.9 90 75-168 5-95 (113)
41 cd02951 SoxW SoxW family; SoxW 99.8 7.1E-20 1.5E-24 129.3 12.5 98 82-181 4-118 (125)
42 cd02989 Phd_like_TxnDC9 Phosdu 99.8 2E-19 4.3E-24 125.0 13.1 94 80-178 11-112 (113)
43 cd02975 PfPDO_like_N Pyrococcu 99.8 7.4E-20 1.6E-24 127.2 10.9 89 93-182 22-110 (113)
44 TIGR00424 APS_reduc 5'-adenyly 99.8 3E-19 6.4E-24 149.9 14.0 109 72-181 349-462 (463)
45 cd02992 PDI_a_QSOX PDIa family 99.8 5.1E-19 1.1E-23 123.2 12.7 100 76-176 3-110 (114)
46 PLN02309 5'-adenylylsulfate re 99.8 5.3E-19 1.1E-23 148.3 14.0 108 73-181 344-456 (457)
47 KOG0908 Thioredoxin-like prote 99.8 2E-19 4.4E-24 137.0 10.1 102 76-181 4-105 (288)
48 PTZ00051 thioredoxin; Provisio 99.8 1.4E-18 3E-23 117.3 12.4 91 79-175 6-96 (98)
49 KOG0190 Protein disulfide isom 99.8 1.9E-19 4.2E-24 150.6 9.7 106 72-181 23-131 (493)
50 cd03007 PDI_a_ERp29_N PDIa fam 99.8 7E-19 1.5E-23 121.9 10.7 100 76-181 3-115 (116)
51 TIGR01295 PedC_BrcD bacterioci 99.8 2.8E-18 6E-23 120.8 13.0 98 76-179 8-121 (122)
52 PTZ00102 disulphide isomerase; 99.8 1.2E-18 2.6E-23 148.0 13.1 107 73-181 356-464 (477)
53 cd02987 Phd_like_Phd Phosducin 99.8 3.7E-18 8E-23 127.2 13.2 104 74-181 62-174 (175)
54 TIGR01130 ER_PDI_fam protein d 99.8 2.3E-18 4.9E-23 145.4 13.5 105 75-182 2-109 (462)
55 PTZ00102 disulphide isomerase; 99.8 3.3E-18 7.1E-23 145.4 13.4 102 75-181 33-137 (477)
56 KOG0190 Protein disulfide isom 99.8 1.3E-18 2.8E-23 145.7 8.4 105 74-181 366-472 (493)
57 cd02952 TRP14_like Human TRX-r 99.8 8.4E-18 1.8E-22 117.3 11.1 96 80-178 8-118 (119)
58 cd02947 TRX_family TRX family; 99.8 1.6E-17 3.4E-22 109.6 11.8 92 83-179 2-93 (93)
59 TIGR02738 TrbB type-F conjugat 99.8 1.2E-17 2.7E-22 121.7 11.5 88 93-182 50-153 (153)
60 TIGR00411 redox_disulf_1 small 99.7 3.2E-17 6.9E-22 107.0 10.8 81 96-182 2-82 (82)
61 cd02982 PDI_b'_family Protein 99.7 2.6E-17 5.6E-22 112.0 10.1 90 93-182 12-103 (103)
62 cd02959 ERp19 Endoplasmic reti 99.7 9E-18 1.9E-22 117.4 7.0 98 83-180 7-111 (117)
63 cd02988 Phd_like_VIAF Phosduci 99.7 1.3E-16 2.7E-21 120.6 12.7 102 73-180 81-190 (192)
64 TIGR01130 ER_PDI_fam protein d 99.7 4E-17 8.7E-22 137.8 11.1 106 73-181 345-453 (462)
65 cd03008 TryX_like_RdCVF Trypar 99.7 5.3E-17 1.2E-21 117.2 9.5 73 89-161 21-126 (146)
66 PRK14018 trifunctional thiored 99.7 1.1E-16 2.4E-21 136.1 12.7 104 72-180 39-171 (521)
67 PRK15412 thiol:disulfide inter 99.7 1E-16 2.2E-21 120.6 11.2 87 92-182 67-176 (185)
68 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.1E-16 2.3E-21 113.1 9.4 82 90-174 22-126 (127)
69 PRK00293 dipZ thiol:disulfide 99.7 1.8E-16 3.9E-21 137.4 12.3 102 79-181 458-569 (571)
70 TIGR02740 TraF-like TraF-like 99.7 4.3E-16 9.3E-21 123.6 12.9 93 86-180 159-262 (271)
71 PRK03147 thiol-disulfide oxido 99.7 7.4E-16 1.6E-20 114.2 12.5 107 72-181 42-171 (173)
72 PF13905 Thioredoxin_8: Thiore 99.7 4E-16 8.6E-21 104.7 10.1 67 93-159 1-94 (95)
73 TIGR00385 dsbE periplasmic pro 99.7 2.5E-16 5.4E-21 117.3 9.9 87 92-182 62-171 (173)
74 PTZ00062 glutaredoxin; Provisi 99.7 8.4E-16 1.8E-20 116.7 11.5 90 79-181 4-93 (204)
75 KOG4277 Uncharacterized conser 99.7 1.3E-16 2.9E-21 125.0 7.2 85 93-180 43-130 (468)
76 PF13098 Thioredoxin_2: Thiore 99.7 2.3E-16 5.1E-21 108.9 7.7 87 91-178 3-112 (112)
77 cd02964 TryX_like_family Trypa 99.7 7.3E-16 1.6E-20 109.8 9.8 71 90-160 14-112 (132)
78 TIGR02187 GlrX_arch Glutaredox 99.7 1E-15 2.2E-20 117.8 11.2 90 91-181 17-110 (215)
79 cd03009 TryX_like_TryX_NRX Try 99.7 6.9E-16 1.5E-20 109.6 9.3 71 90-160 15-112 (131)
80 cd02955 SSP411 TRX domain, SSP 99.7 2E-15 4.3E-20 106.3 11.4 98 80-180 4-117 (124)
81 PLN02399 phospholipid hydroper 99.7 3.7E-15 8.1E-20 115.6 13.8 110 70-182 78-234 (236)
82 KOG0912 Thiol-disulfide isomer 99.6 8E-16 1.7E-20 120.5 7.9 100 80-182 2-106 (375)
83 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.2E-15 4.8E-20 105.6 9.0 98 74-177 3-121 (123)
84 cd02967 mauD Methylamine utili 99.6 2.7E-15 5.9E-20 103.8 8.4 67 93-159 21-107 (114)
85 PTZ00056 glutathione peroxidas 99.6 4.1E-15 8.8E-20 113.1 9.9 108 72-182 20-178 (199)
86 PRK13728 conjugal transfer pro 99.6 6.8E-15 1.5E-19 109.4 10.6 84 97-182 73-171 (181)
87 TIGR02187 GlrX_arch Glutaredox 99.6 1.1E-14 2.4E-19 112.0 11.9 85 90-180 130-214 (215)
88 PLN02919 haloacid dehalogenase 99.6 5.1E-15 1.1E-19 136.0 11.3 90 91-181 418-535 (1057)
89 KOG0191 Thioredoxin/protein di 99.6 5.4E-15 1.2E-19 122.8 9.7 98 81-181 36-133 (383)
90 PF08534 Redoxin: Redoxin; In 99.6 1.1E-14 2.3E-19 105.2 9.9 95 79-176 16-144 (146)
91 TIGR00412 redox_disulf_2 small 99.6 1.2E-14 2.5E-19 94.0 8.4 74 97-179 2-76 (76)
92 cd02966 TlpA_like_family TlpA- 99.6 1.2E-14 2.7E-19 99.3 8.9 76 91-167 17-116 (116)
93 cd03012 TlpA_like_DipZ_like Tl 99.6 2.5E-14 5.4E-19 101.0 9.8 76 91-167 21-124 (126)
94 PLN02412 probable glutathione 99.6 4.8E-14 1E-18 104.4 10.8 108 72-182 10-164 (167)
95 PHA02125 thioredoxin-like prot 99.6 6.6E-14 1.4E-18 90.2 9.8 71 97-178 2-73 (75)
96 TIGR02661 MauD methylamine deh 99.5 4.9E-14 1.1E-18 106.4 10.6 105 71-180 52-177 (189)
97 TIGR02540 gpx7 putative glutat 99.5 4.9E-14 1.1E-18 102.8 9.9 93 89-182 18-153 (153)
98 KOG1731 FAD-dependent sulfhydr 99.5 5.7E-15 1.2E-19 124.2 5.5 108 72-180 37-151 (606)
99 KOG0191 Thioredoxin/protein di 99.5 8.3E-14 1.8E-18 115.8 10.3 137 37-181 113-251 (383)
100 cd00340 GSH_Peroxidase Glutath 99.5 7.5E-14 1.6E-18 101.7 7.9 87 89-177 18-151 (152)
101 TIGR01626 ytfJ_HI0045 conserve 99.5 2E-13 4.4E-18 102.0 9.7 84 90-177 56-175 (184)
102 cd02973 TRX_GRX_like Thioredox 99.5 1.6E-13 3.5E-18 86.2 7.4 57 96-153 2-58 (67)
103 cd02958 UAS UAS family; UAS is 99.5 9E-13 2E-17 91.5 11.9 89 92-181 16-110 (114)
104 COG4232 Thiol:disulfide interc 99.5 3.2E-13 6.8E-18 114.6 10.8 100 80-181 461-567 (569)
105 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 8.5E-13 1.8E-17 87.8 10.3 82 87-175 6-87 (89)
106 PTZ00256 glutathione peroxidas 99.4 6.7E-13 1.5E-17 99.7 9.0 108 72-182 21-181 (183)
107 cd02969 PRX_like1 Peroxiredoxi 99.4 1.2E-12 2.6E-17 97.1 10.3 89 92-181 24-151 (171)
108 PRK00522 tpx lipid hydroperoxi 99.4 2.4E-12 5.2E-17 95.3 11.3 107 69-179 22-166 (167)
109 cd02960 AGR Anterior Gradient 99.4 1.5E-12 3.2E-17 92.0 8.3 84 83-168 11-99 (130)
110 cd03017 PRX_BCP Peroxiredoxin 99.4 1.9E-12 4.1E-17 92.5 8.9 87 91-178 21-139 (140)
111 PRK11509 hydrogenase-1 operon 99.4 1.7E-11 3.8E-16 86.6 11.5 100 79-182 22-124 (132)
112 PF13899 Thioredoxin_7: Thiore 99.3 6.6E-12 1.4E-16 82.1 8.3 63 93-156 17-82 (82)
113 PF00578 AhpC-TSA: AhpC/TSA fa 99.3 4.2E-12 9.2E-17 88.8 7.9 87 72-160 6-121 (124)
114 cd03014 PRX_Atyp2cys Peroxired 99.3 9.5E-12 2.1E-16 89.5 9.5 103 72-178 7-141 (143)
115 smart00594 UAS UAS domain. 99.3 4E-11 8.6E-16 84.3 11.8 88 92-179 26-122 (122)
116 cd03015 PRX_Typ2cys Peroxiredo 99.3 1.9E-11 4.2E-16 90.9 10.5 91 90-181 26-156 (173)
117 PRK09437 bcp thioredoxin-depen 99.3 3.1E-11 6.7E-16 87.9 10.8 104 72-178 11-149 (154)
118 KOG2501 Thioredoxin, nucleored 99.3 1.2E-11 2.6E-16 89.2 7.2 69 92-160 32-128 (157)
119 TIGR03137 AhpC peroxiredoxin. 99.3 4.4E-11 9.5E-16 90.1 10.2 91 90-180 28-154 (187)
120 COG0526 TrxA Thiol-disulfide i 99.2 8.2E-11 1.8E-15 79.7 8.8 85 93-179 32-121 (127)
121 cd03018 PRX_AhpE_like Peroxire 99.2 1.5E-10 3.3E-15 83.5 10.2 88 91-179 25-148 (149)
122 PF13728 TraF: F plasmid trans 99.2 3.4E-10 7.3E-15 87.0 12.1 95 82-178 109-214 (215)
123 cd02970 PRX_like2 Peroxiredoxi 99.2 1.9E-10 4.1E-15 82.8 9.3 74 93-167 23-148 (149)
124 PRK13190 putative peroxiredoxi 99.2 6E-10 1.3E-14 85.0 11.5 91 91-181 25-153 (202)
125 PRK10382 alkyl hydroperoxide r 99.1 6.7E-10 1.4E-14 83.7 11.1 91 90-180 28-154 (187)
126 cd02968 SCO SCO (an acronym fo 99.1 2.2E-10 4.7E-15 82.0 7.6 61 73-135 4-69 (142)
127 PRK10606 btuE putative glutath 99.1 2.4E-10 5.2E-15 85.7 8.1 46 88-134 20-66 (183)
128 cd02971 PRX_family Peroxiredox 99.1 4.1E-10 8.9E-15 80.3 8.9 78 92-170 21-131 (140)
129 PRK13599 putative peroxiredoxi 99.1 2E-09 4.3E-14 82.8 10.6 91 91-181 26-155 (215)
130 PF14595 Thioredoxin_9: Thiore 99.1 1.1E-09 2.4E-14 77.7 8.4 89 87-179 35-126 (129)
131 KOG3414 Component of the U4/U6 99.0 6.5E-09 1.4E-13 71.8 11.3 100 80-179 10-117 (142)
132 cd01659 TRX_superfamily Thiore 99.0 1.6E-09 3.5E-14 65.4 7.6 60 97-157 1-63 (69)
133 PF03190 Thioredox_DsbH: Prote 99.0 2.7E-09 5.9E-14 78.0 9.8 79 80-160 26-115 (163)
134 TIGR02196 GlrX_YruB Glutaredox 99.0 2.2E-09 4.7E-14 67.8 8.2 69 97-179 2-74 (74)
135 COG2143 Thioredoxin-related pr 99.0 5.2E-09 1.1E-13 75.1 10.7 87 92-179 41-146 (182)
136 KOG0913 Thiol-disulfide isomer 99.0 5.7E-11 1.2E-15 90.3 0.7 100 74-180 24-124 (248)
137 TIGR02200 GlrX_actino Glutared 99.0 3E-09 6.5E-14 68.1 8.7 70 97-179 2-76 (77)
138 TIGR02739 TraF type-F conjugat 99.0 6.1E-09 1.3E-13 81.7 11.7 93 86-180 143-246 (256)
139 PRK15000 peroxidase; Provision 99.0 5E-09 1.1E-13 79.8 10.8 88 92-180 33-160 (200)
140 PTZ00137 2-Cys peroxiredoxin; 99.0 9.7E-09 2.1E-13 80.9 11.3 89 92-180 97-223 (261)
141 PRK13191 putative peroxiredoxi 99.0 8.6E-09 1.9E-13 79.3 10.6 90 92-181 32-160 (215)
142 PRK13189 peroxiredoxin; Provis 99.0 9.8E-09 2.1E-13 79.4 10.8 90 92-181 34-162 (222)
143 PF06110 DUF953: Eukaryotic pr 98.9 9.5E-09 2.1E-13 71.6 9.3 78 80-157 4-99 (119)
144 KOG0914 Thioredoxin-like prote 98.9 2.1E-09 4.5E-14 81.1 6.4 84 75-158 125-216 (265)
145 cd03016 PRX_1cys Peroxiredoxin 98.9 1.3E-08 2.8E-13 77.7 10.7 87 94-181 26-153 (203)
146 PTZ00253 tryparedoxin peroxida 98.9 1E-08 2.3E-13 77.9 9.4 92 89-180 32-162 (199)
147 PRK13703 conjugal pilus assemb 98.9 3.2E-08 6.8E-13 77.3 11.5 93 86-180 136-239 (248)
148 cd02991 UAS_ETEA UAS family, E 98.8 8.9E-08 1.9E-12 66.7 10.2 90 91-181 15-112 (116)
149 PF13848 Thioredoxin_6: Thiore 98.8 1.7E-07 3.6E-12 69.7 12.3 128 37-180 53-184 (184)
150 PF02966 DIM1: Mitosis protein 98.8 2.2E-07 4.9E-12 65.0 11.9 99 80-179 7-114 (133)
151 PF13192 Thioredoxin_3: Thiore 98.8 9.8E-08 2.1E-12 61.4 9.4 71 100-179 5-76 (76)
152 TIGR02180 GRX_euk Glutaredoxin 98.8 2E-08 4.4E-13 65.3 6.2 54 97-152 1-59 (84)
153 KOG3425 Uncharacterized conser 98.8 4.2E-08 9.1E-13 67.3 7.4 78 80-157 11-105 (128)
154 PF02114 Phosducin: Phosducin; 98.7 2E-07 4.4E-12 73.7 10.0 103 75-181 126-237 (265)
155 COG1225 Bcp Peroxiredoxin [Pos 98.6 1.3E-06 2.8E-11 63.6 10.7 109 70-181 9-155 (157)
156 PRK11657 dsbG disulfide isomer 98.5 1.1E-06 2.4E-11 69.2 9.8 85 92-180 116-250 (251)
157 cd02976 NrdH NrdH-redoxin (Nrd 98.5 1E-06 2.2E-11 55.2 7.8 68 97-178 2-73 (73)
158 cd03072 PDI_b'_ERp44 PDIb' fam 98.5 2.1E-06 4.5E-11 59.3 9.6 100 78-182 3-108 (111)
159 TIGR03143 AhpF_homolog putativ 98.5 1.6E-06 3.6E-11 75.5 11.1 92 79-178 463-554 (555)
160 PRK10877 protein disulfide iso 98.5 1.6E-06 3.5E-11 67.5 9.4 81 92-181 106-230 (232)
161 PRK11200 grxA glutaredoxin 1; 98.4 9E-07 2E-11 58.0 6.8 75 96-181 2-82 (85)
162 PF01216 Calsequestrin: Calseq 98.4 5E-06 1.1E-10 67.1 11.1 101 75-181 35-143 (383)
163 KOG0911 Glutaredoxin-related p 98.4 2.9E-07 6.2E-12 70.0 3.3 76 92-170 16-91 (227)
164 PRK15317 alkyl hydroperoxide r 98.4 4.6E-06 9.9E-11 72.1 11.2 94 79-180 103-196 (517)
165 KOG1672 ATP binding protein [P 98.3 1.9E-06 4.1E-11 64.1 6.7 83 80-167 73-155 (211)
166 cd03023 DsbA_Com1_like DsbA fa 98.3 1E-05 2.2E-10 58.1 10.1 38 93-131 5-42 (154)
167 cd03020 DsbA_DsbC_DsbG DsbA fa 98.3 3.9E-06 8.5E-11 63.6 8.2 76 93-178 77-197 (197)
168 cd02983 P5_C P5 family, C-term 98.3 6.7E-06 1.4E-10 58.4 8.7 103 76-182 4-115 (130)
169 TIGR03143 AhpF_homolog putativ 98.3 9E-06 1.9E-10 71.0 11.3 99 82-181 355-453 (555)
170 cd03073 PDI_b'_ERp72_ERp57 PDI 98.3 9.9E-06 2.1E-10 55.9 9.2 75 106-182 31-111 (111)
171 PF05768 DUF836: Glutaredoxin- 98.3 4.1E-06 8.9E-11 54.5 6.6 80 97-179 2-81 (81)
172 PF11009 DUF2847: Protein of u 98.2 4E-05 8.7E-10 52.1 10.4 95 79-174 5-104 (105)
173 TIGR02183 GRXA Glutaredoxin, G 98.2 4.9E-06 1.1E-10 54.7 5.8 74 97-181 2-81 (86)
174 PF13462 Thioredoxin_4: Thiore 98.2 5.7E-05 1.2E-09 54.8 12.0 81 93-180 12-162 (162)
175 cd03419 GRX_GRXh_1_2_like Glut 98.2 7.2E-06 1.6E-10 52.9 6.3 54 97-155 2-60 (82)
176 KOG2603 Oligosaccharyltransfer 98.2 1.8E-05 3.8E-10 63.1 9.4 106 75-181 41-165 (331)
177 PF00462 Glutaredoxin: Glutare 98.2 1.2E-05 2.6E-10 49.0 6.7 51 97-153 1-55 (60)
178 TIGR03140 AhpF alkyl hydropero 98.1 3.8E-05 8.3E-10 66.4 11.1 94 79-180 104-197 (515)
179 cd02981 PDI_b_family Protein D 98.1 9E-05 2E-09 49.3 10.7 91 80-180 6-96 (97)
180 TIGR02190 GlrX-dom Glutaredoxi 98.0 2.7E-05 5.8E-10 50.3 6.9 53 94-152 7-62 (79)
181 cd02066 GRX_family Glutaredoxi 98.0 2.4E-05 5.1E-10 48.6 6.4 50 97-152 2-55 (72)
182 PHA03050 glutaredoxin; Provisi 98.0 4.9E-05 1.1E-09 52.2 8.0 55 97-155 15-76 (108)
183 TIGR02194 GlrX_NrdH Glutaredox 98.0 2.9E-05 6.2E-10 49.2 6.1 67 97-176 1-70 (72)
184 cd03019 DsbA_DsbA DsbA family, 97.9 0.00011 2.4E-09 54.2 9.1 38 93-130 15-52 (178)
185 PRK10329 glutaredoxin-like pro 97.9 0.00023 5.1E-09 46.2 9.5 70 97-180 3-75 (81)
186 TIGR02181 GRX_bact Glutaredoxi 97.9 4.8E-05 1E-09 48.9 5.8 52 97-155 1-56 (79)
187 TIGR02189 GlrX-like_plant Glut 97.9 6.2E-05 1.4E-09 50.8 6.5 52 97-155 10-68 (99)
188 cd03418 GRX_GRXb_1_3_like Glut 97.8 0.00014 3.1E-09 46.0 7.1 52 97-155 2-58 (75)
189 cd02972 DsbA_family DsbA famil 97.8 8.9E-05 1.9E-09 48.6 6.1 59 97-155 1-91 (98)
190 cd03027 GRX_DEP Glutaredoxin ( 97.8 0.00016 3.4E-09 45.8 6.7 52 97-155 3-58 (73)
191 PRK10954 periplasmic protein d 97.8 0.00024 5.1E-09 54.3 8.9 40 93-132 37-79 (207)
192 PF07912 ERp29_N: ERp29, N-ter 97.7 0.0018 3.8E-08 45.1 11.2 100 77-181 7-118 (126)
193 PF07449 HyaE: Hydrogenase-1 e 97.7 0.00013 2.7E-09 49.9 5.4 90 76-170 11-103 (107)
194 cd03029 GRX_hybridPRX5 Glutare 97.7 0.00027 5.8E-09 44.6 6.7 66 97-178 3-71 (72)
195 TIGR00365 monothiol glutaredox 97.6 0.00054 1.2E-08 46.1 8.3 63 83-155 4-74 (97)
196 PF00837 T4_deiodinase: Iodoth 97.6 0.00043 9.4E-09 53.6 8.6 64 68-131 76-140 (237)
197 PF13743 Thioredoxin_5: Thiore 97.5 0.00062 1.3E-08 50.8 7.7 33 99-131 2-34 (176)
198 COG1331 Highly conserved prote 97.5 0.00055 1.2E-08 60.1 8.0 78 80-159 32-120 (667)
199 cd03013 PRX5_like Peroxiredoxi 97.5 0.00045 9.7E-09 50.4 6.4 44 92-135 28-75 (155)
200 COG0695 GrxC Glutaredoxin and 97.4 0.00067 1.4E-08 44.0 6.3 51 97-153 3-59 (80)
201 cd03028 GRX_PICOT_like Glutare 97.4 0.001 2.2E-08 44.0 7.0 46 103-155 21-70 (90)
202 PRK10638 glutaredoxin 3; Provi 97.4 0.001 2.2E-08 43.1 6.7 49 97-151 4-56 (83)
203 KOG1752 Glutaredoxin and relat 97.3 0.0029 6.3E-08 43.1 8.1 63 83-153 6-73 (104)
204 PF13848 Thioredoxin_6: Thiore 97.3 0.0044 9.5E-08 45.7 9.9 66 111-181 8-74 (184)
205 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.01 2.3E-07 39.9 9.3 97 80-180 8-110 (112)
206 cd02974 AhpF_NTD_N Alkyl hydro 96.9 0.03 6.6E-07 37.3 10.5 86 82-181 8-93 (94)
207 COG0386 BtuE Glutathione perox 96.8 0.0098 2.1E-07 43.0 7.6 93 88-182 20-160 (162)
208 PRK10824 glutaredoxin-4; Provi 96.8 0.01 2.2E-07 41.2 7.3 62 82-154 6-76 (115)
209 PRK12759 bifunctional gluaredo 96.7 0.0054 1.2E-07 51.8 6.8 52 96-153 3-66 (410)
210 KOG2640 Thioredoxin [Function 96.5 0.00097 2.1E-08 53.3 1.0 92 86-181 69-161 (319)
211 COG1999 Uncharacterized protei 96.5 0.037 7.9E-07 42.4 9.4 106 74-182 50-204 (207)
212 cd03069 PDI_b_ERp57 PDIb famil 96.4 0.091 2E-06 35.5 10.4 92 80-181 7-103 (104)
213 PTZ00062 glutaredoxin; Provisi 96.4 0.028 6.2E-07 42.9 8.5 44 103-152 126-173 (204)
214 cd03066 PDI_b_Calsequestrin_mi 96.3 0.15 3.4E-06 34.2 10.7 92 80-181 7-100 (102)
215 KOG3170 Conserved phosducin-li 96.2 0.058 1.3E-06 40.8 8.8 100 74-179 91-198 (240)
216 PF02630 SCO1-SenC: SCO1/SenC; 96.2 0.013 2.8E-07 43.6 5.3 47 90-136 49-99 (174)
217 KOG3171 Conserved phosducin-li 96.1 0.03 6.5E-07 42.8 7.1 101 76-180 141-249 (273)
218 PF01323 DSBA: DSBA-like thior 96.1 0.13 2.9E-06 38.1 10.8 36 96-131 1-37 (193)
219 COG0450 AhpC Peroxiredoxin [Po 96.0 0.096 2.1E-06 39.4 9.4 91 90-180 30-159 (194)
220 TIGR02654 circ_KaiB circadian 95.9 0.056 1.2E-06 35.4 6.8 74 94-170 3-77 (87)
221 COG1651 DsbG Protein-disulfide 95.9 0.049 1.1E-06 42.3 7.8 37 138-181 206-242 (244)
222 PRK09301 circadian clock prote 95.8 0.067 1.4E-06 36.2 6.9 76 92-170 4-80 (103)
223 cd02978 KaiB_like KaiB-like fa 95.6 0.1 2.2E-06 33.0 6.7 62 96-157 3-65 (72)
224 cd02977 ArsC_family Arsenate R 95.5 0.016 3.4E-07 39.2 3.2 75 98-180 2-85 (105)
225 cd03036 ArsC_like Arsenate Red 95.4 0.016 3.6E-07 39.7 3.0 75 98-180 2-86 (111)
226 PF09673 TrbC_Ftype: Type-F co 95.1 0.19 4.1E-06 34.6 7.7 73 79-156 8-80 (113)
227 cd03040 GST_N_mPGES2 GST_N fam 95.1 0.12 2.6E-06 32.5 6.3 75 97-182 2-76 (77)
228 cd03031 GRX_GRX_like Glutaredo 95.1 0.12 2.6E-06 37.4 6.8 52 97-155 2-67 (147)
229 KOG1651 Glutathione peroxidase 95.1 0.11 2.3E-06 38.2 6.4 57 76-134 19-76 (171)
230 PRK15317 alkyl hydroperoxide r 95.0 0.27 5.8E-06 42.8 10.0 86 82-181 8-93 (517)
231 PF00255 GSHPx: Glutathione pe 95.0 0.042 9.1E-07 37.7 3.9 47 88-135 16-63 (108)
232 TIGR03140 AhpF alkyl hydropero 94.7 0.37 8E-06 41.9 10.2 88 81-181 7-94 (515)
233 TIGR01617 arsC_related transcr 94.5 0.12 2.6E-06 35.7 5.4 75 98-180 2-86 (117)
234 cd03074 PDI_b'_Calsequestrin_C 94.3 1.1 2.4E-05 30.6 11.0 106 77-182 4-120 (120)
235 TIGR02742 TrbC_Ftype type-F co 93.7 0.49 1.1E-05 33.5 7.2 46 134-179 58-112 (130)
236 cd03041 GST_N_2GST_N GST_N fam 93.6 1.1 2.4E-05 28.1 8.4 71 97-181 2-76 (77)
237 cd03060 GST_N_Omega_like GST_N 93.3 0.27 5.7E-06 30.4 4.9 51 98-152 2-53 (71)
238 cd03032 ArsC_Spx Arsenate Redu 93.1 0.12 2.5E-06 35.7 3.3 76 97-180 2-85 (115)
239 COG2077 Tpx Peroxiredoxin [Pos 92.8 2.1 4.5E-05 31.1 9.2 77 55-134 8-85 (158)
240 PRK12559 transcriptional regul 92.8 0.17 3.6E-06 35.9 3.7 33 97-135 2-34 (131)
241 KOG2792 Putative cytochrome C 92.6 0.57 1.2E-05 36.9 6.7 89 92-181 138-274 (280)
242 PHA03075 glutaredoxin-like pro 92.1 0.26 5.7E-06 33.9 3.8 30 94-123 2-31 (123)
243 KOG0855 Alkyl hydroperoxide re 92.0 1 2.2E-05 33.3 7.0 64 70-135 68-134 (211)
244 KOG2507 Ubiquitin regulatory p 92.0 2.2 4.7E-05 36.1 9.7 88 93-181 18-110 (506)
245 PRK01655 spxA transcriptional 91.9 0.36 7.9E-06 34.1 4.6 35 97-137 2-36 (131)
246 COG2761 FrnE Predicted dithiol 91.5 0.37 7.9E-06 37.3 4.5 39 138-182 175-213 (225)
247 cd03051 GST_N_GTT2_like GST_N 91.3 1.3 2.9E-05 27.0 6.3 52 98-153 2-57 (74)
248 cd03035 ArsC_Yffb Arsenate Red 90.8 0.37 8E-06 32.7 3.5 71 97-180 1-83 (105)
249 KOG0852 Alkyl hydroperoxide re 90.7 2.9 6.3E-05 31.2 8.2 92 88-179 28-158 (196)
250 COG4545 Glutaredoxin-related p 90.3 0.77 1.7E-05 29.2 4.3 53 98-156 5-73 (85)
251 cd03068 PDI_b_ERp72 PDIb famil 90.1 4.3 9.4E-05 27.4 9.8 94 80-181 7-107 (107)
252 PF04592 SelP_N: Selenoprotein 90.0 0.64 1.4E-05 36.1 4.6 47 88-134 21-71 (238)
253 cd00570 GST_N_family Glutathio 89.9 0.6 1.3E-05 27.7 3.7 51 98-152 2-54 (71)
254 PF07689 KaiB: KaiB domain; I 89.9 0.15 3.3E-06 33.1 1.0 56 100-155 3-59 (82)
255 PF13417 GST_N_3: Glutathione 89.6 3 6.5E-05 25.9 6.9 69 99-181 1-70 (75)
256 cd03037 GST_N_GRX2 GST_N famil 89.3 0.66 1.4E-05 28.5 3.6 68 99-179 3-70 (71)
257 PRK13344 spxA transcriptional 89.0 0.57 1.2E-05 33.2 3.5 34 97-136 2-35 (132)
258 KOG4277 Uncharacterized conser 88.8 2.4 5.3E-05 34.4 7.2 120 35-180 109-229 (468)
259 PF06053 DUF929: Domain of unk 88.7 2 4.3E-05 33.9 6.6 59 91-156 56-114 (249)
260 cd02990 UAS_FAF1 UAS family, F 88.3 7.4 0.00016 27.7 11.9 87 93-180 21-131 (136)
261 COG3634 AhpF Alkyl hydroperoxi 87.8 3.9 8.5E-05 34.2 7.9 90 83-179 106-195 (520)
262 cd03045 GST_N_Delta_Epsilon GS 86.9 1.5 3.4E-05 26.9 4.2 51 98-152 2-56 (74)
263 COG3019 Predicted metal-bindin 86.9 8.7 0.00019 27.5 8.2 72 96-180 27-102 (149)
264 PF09822 ABC_transp_aux: ABC-t 86.2 15 0.00032 29.0 11.3 60 87-147 19-88 (271)
265 cd03059 GST_N_SspA GST_N famil 85.9 1.4 3.1E-05 26.9 3.7 69 98-180 2-71 (73)
266 COG3531 Predicted protein-disu 84.1 1.9 4.2E-05 32.7 4.1 43 137-181 164-208 (212)
267 cd03025 DsbA_FrnE_like DsbA fa 82.4 2.1 4.6E-05 31.6 3.9 30 97-126 3-32 (193)
268 cd03024 DsbA_FrnE DsbA family, 81.9 1.9 4.1E-05 32.1 3.5 38 136-179 164-201 (201)
269 cd03055 GST_N_Omega GST_N fami 81.7 4.3 9.4E-05 26.2 4.8 53 97-153 19-72 (89)
270 PF04134 DUF393: Protein of un 81.6 2.3 4.9E-05 28.8 3.5 57 100-158 2-60 (114)
271 PF08806 Sep15_SelM: Sep15/Sel 81.0 3.1 6.7E-05 26.7 3.7 34 147-181 41-75 (78)
272 PF09695 YtfJ_HI0045: Bacteria 80.3 20 0.00044 26.2 8.4 87 92-179 36-155 (160)
273 PRK13730 conjugal transfer pil 77.6 5.8 0.00012 30.3 4.8 41 136-179 151-191 (212)
274 PF13778 DUF4174: Domain of un 76.7 22 0.00047 24.5 9.3 85 96-181 12-111 (118)
275 KOG1422 Intracellular Cl- chan 71.1 31 0.00067 26.6 7.3 65 104-181 20-84 (221)
276 TIGR00014 arsC arsenate reduct 71.0 4.5 9.8E-05 27.7 2.7 72 98-180 2-85 (114)
277 cd03022 DsbA_HCCA_Iso DsbA fam 70.5 6 0.00013 29.1 3.5 35 137-178 157-191 (192)
278 cd03034 ArsC_ArsC Arsenate Red 70.5 4.3 9.3E-05 27.7 2.4 72 98-180 2-84 (112)
279 cd03056 GST_N_4 GST_N family, 69.5 14 0.0003 22.2 4.5 51 99-153 3-57 (73)
280 PF01216 Calsequestrin: Calseq 63.8 87 0.0019 26.2 10.4 109 74-182 249-368 (383)
281 cd03033 ArsC_15kD Arsenate Red 63.7 11 0.00023 25.9 3.3 32 97-134 2-33 (113)
282 KOG1364 Predicted ubiquitin re 62.2 12 0.00026 30.8 3.8 55 126-180 133-187 (356)
283 KOG2244 Highly conserved prote 61.8 24 0.00053 31.2 5.7 76 80-157 101-187 (786)
284 cd03025 DsbA_FrnE_like DsbA fa 61.0 9.2 0.0002 28.1 2.9 22 137-158 159-180 (193)
285 COG0278 Glutaredoxin-related p 58.2 32 0.0007 23.2 4.7 45 102-151 27-72 (105)
286 cd03052 GST_N_GDAP1 GST_N fami 58.0 27 0.00058 21.5 4.2 51 98-152 2-56 (73)
287 PF06764 DUF1223: Protein of u 55.9 90 0.0019 23.8 9.0 75 97-180 2-96 (202)
288 cd03061 GST_N_CLIC GST_N famil 54.2 60 0.0013 21.3 7.8 65 102-180 19-84 (91)
289 PF10726 DUF2518: Protein of f 54.0 31 0.00067 24.8 4.3 35 147-181 69-103 (145)
290 PF06953 ArsD: Arsenical resis 53.9 74 0.0016 22.2 6.8 50 125-179 40-99 (123)
291 cd03053 GST_N_Phi GST_N family 53.3 42 0.00092 20.3 4.6 70 97-180 2-75 (76)
292 COG2761 FrnE Predicted dithiol 50.2 33 0.00071 26.7 4.3 33 94-126 4-37 (225)
293 cd03054 GST_N_Metaxin GST_N fa 48.7 58 0.0013 19.6 5.4 59 102-180 13-71 (72)
294 COG3011 Predicted thiol-disulf 48.1 1E+02 0.0022 22.1 6.2 64 93-158 6-70 (137)
295 cd03361 TOPRIM_TopoIA_RevGyr T 47.8 46 0.00099 24.5 4.7 63 112-180 106-169 (170)
296 COG1393 ArsC Arsenate reductas 44.7 32 0.00068 23.8 3.2 23 97-119 3-25 (117)
297 COG5309 Exo-beta-1,3-glucanase 44.5 54 0.0012 26.4 4.7 96 80-180 61-160 (305)
298 PF05176 ATP-synt_10: ATP10 pr 43.7 1.6E+02 0.0035 23.2 8.7 86 93-179 122-247 (252)
299 cd03021 DsbA_GSTK DsbA family, 42.1 44 0.00095 25.2 4.0 39 138-178 170-208 (209)
300 PF07700 HNOB: Heme NO binding 42.0 82 0.0018 23.0 5.3 43 93-135 127-170 (171)
301 cd03049 GST_N_3 GST_N family, 40.7 80 0.0017 18.9 4.4 53 99-153 3-56 (73)
302 KOG0912 Thiol-disulfide isomer 40.4 1.4E+02 0.003 24.7 6.5 66 75-144 211-279 (375)
303 cd00307 RuBisCO_small_like Rib 39.7 36 0.00077 22.2 2.6 35 100-134 28-71 (84)
304 COG5429 Uncharacterized secret 39.6 1E+02 0.0023 24.2 5.5 79 94-179 42-138 (261)
305 TIGR02743 TraW type-F conjugat 38.9 43 0.00094 25.6 3.4 35 115-154 158-192 (202)
306 PF14424 Toxin-deaminase: The 37.7 76 0.0016 22.5 4.3 27 98-128 99-127 (133)
307 cd03058 GST_N_Tau GST_N family 37.3 72 0.0016 19.2 3.8 68 99-180 3-72 (74)
308 COG0295 Cdd Cytidine deaminase 37.0 88 0.0019 22.3 4.5 12 103-114 86-97 (134)
309 PRK10853 putative reductase; P 34.9 49 0.0011 22.8 2.9 32 97-134 2-33 (118)
310 PF11287 DUF3088: Protein of u 34.7 90 0.002 21.5 4.1 75 105-180 24-105 (112)
311 PF03960 ArsC: ArsC family; I 34.1 83 0.0018 21.0 4.0 70 100-180 1-82 (110)
312 PF10589 NADH_4Fe-4S: NADH-ubi 33.1 18 0.0004 20.5 0.5 21 103-123 17-37 (46)
313 PRK10026 arsenate reductase; P 32.6 64 0.0014 23.1 3.3 22 97-118 4-25 (141)
314 PRK09481 sspA stringent starva 32.3 1.8E+02 0.004 21.6 6.0 56 93-152 7-63 (211)
315 TIGR01616 nitro_assoc nitrogen 31.8 75 0.0016 22.2 3.5 23 96-118 2-24 (126)
316 TIGR02652 conserved hypothetic 31.4 16 0.00035 26.1 0.1 13 104-116 11-23 (163)
317 PF09654 DUF2396: Protein of u 31.2 16 0.00035 26.1 -0.0 13 104-116 8-20 (161)
318 PF07511 DUF1525: Protein of u 30.2 1.1E+02 0.0023 21.2 3.9 34 140-179 76-109 (114)
319 PF06616 BsuBI_PstI_RE: BsuBI/ 30.1 3.1E+02 0.0067 22.5 7.9 74 104-177 160-248 (306)
320 PF14097 SpoVAE: Stage V sporu 29.5 73 0.0016 23.7 3.1 26 77-102 36-61 (180)
321 KOG3384 Selenoprotein [General 28.9 97 0.0021 22.2 3.6 35 147-181 116-150 (154)
322 TIGR02182 GRXB Glutaredoxin, G 28.7 2.2E+02 0.0048 21.3 5.9 50 100-153 3-52 (209)
323 PRK13738 conjugal transfer pil 28.7 1.8E+02 0.0039 22.3 5.3 34 115-153 156-189 (209)
324 cd03022 DsbA_HCCA_Iso DsbA fam 28.2 1.3E+02 0.0029 21.7 4.6 32 99-130 3-34 (192)
325 KOG4079 Putative mitochondrial 27.6 50 0.0011 23.6 2.0 35 146-181 72-106 (169)
326 PF14639 YqgF: Holliday-juncti 26.3 1.8E+02 0.0039 21.0 4.7 41 80-123 51-91 (150)
327 PRK10387 glutaredoxin 2; Provi 26.2 1.1E+02 0.0025 22.5 3.9 51 99-153 3-53 (210)
328 cd03030 GRX_SH3BGR Glutaredoxi 25.4 2E+02 0.0044 18.8 6.2 35 108-142 12-47 (92)
329 PF03227 GILT: Gamma interfero 24.7 2.2E+02 0.0048 19.0 4.8 21 97-117 3-24 (108)
330 PF09936 Methyltrn_RNA_4: SAM- 24.6 91 0.002 23.5 3.0 26 79-105 119-144 (185)
331 COG3411 Ferredoxin [Energy pro 24.4 1.4E+02 0.0031 18.3 3.3 28 149-182 18-45 (64)
332 TIGR03757 conj_TIGR03757 integ 24.0 1.8E+02 0.004 20.0 4.2 34 140-179 77-110 (113)
333 KOG3782 Predicted membrane pro 23.7 2.8E+02 0.006 20.6 5.2 21 104-124 26-46 (189)
334 KOG2990 C2C2-type Zn-finger pr 22.7 81 0.0018 25.5 2.5 21 94-114 41-64 (317)
335 TIGR03439 methyl_EasF probable 22.5 1.5E+02 0.0032 24.4 4.1 39 94-136 77-115 (319)
336 KOG0854 Alkyl hydroperoxide re 21.9 3.6E+02 0.0078 20.4 8.6 43 93-135 31-76 (224)
337 TIGR00862 O-ClC intracellular 21.1 3.4E+02 0.0073 21.1 5.7 46 103-152 17-63 (236)
338 cd03050 GST_N_Theta GST_N fami 20.9 2E+02 0.0044 17.2 4.6 50 99-152 3-56 (76)
339 PF06122 TraH: Conjugative rel 20.6 82 0.0018 26.2 2.3 49 75-123 64-115 (361)
340 COG3581 Uncharacterized protei 20.6 3.1E+02 0.0067 23.4 5.6 54 80-133 55-112 (420)
341 KOG1387 Glycosyltransferase [C 20.3 3.4E+02 0.0073 23.1 5.6 64 91-154 39-112 (465)
342 PRK05578 cytidine deaminase; V 20.2 64 0.0014 22.7 1.4 13 103-115 84-96 (131)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.7e-27 Score=166.75 Aligned_cols=105 Identities=30% Similarity=0.628 Sum_probs=97.2
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEE
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 154 (182)
.+..++..+|++.+.++ +.||+|+|||+||+||+.+.|.++++..+|.+++.+++||+|++.+++.+|+|.++||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~S-~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINS-DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHcc-CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 56677999999988776 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
++| +...++.|..+.+.+.++|++.+
T Consensus 123 knG--e~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNG--EKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECC--EEeeeecccCCHHHHHHHHHHHh
Confidence 976 35668899999999999999864
No 2
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=3e-24 Score=146.90 Aligned_cols=101 Identities=24% Similarity=0.456 Sum_probs=91.3
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
+..++.++|++.+.+. +++++|+|||+||++|+.+.|.++++++++.+.+.++.+|++++++++++|+|.++||+++|+
T Consensus 3 v~~l~~~~f~~~i~~~-~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 3 VITLTPEDFPELVLNR-KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred ceEcCHHHHHHHHhcC-CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 5678999999988764 669999999999999999999999999999878999999999999999999999999999998
Q ss_pred CCCCeeeeeecCCCC-HHHHHHHH
Q 041160 156 PDPNKDAIRTEGLIP-IQMMRDII 178 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~-~~~l~~~l 178 (182)
+||+ ...++.|..+ .++|.+||
T Consensus 82 ~g~~-~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNAS-KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCC-CceEccCCCCCHHHHHhhC
Confidence 8744 5778899887 99998875
No 3
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.92 E-value=5.2e-24 Score=144.67 Aligned_cols=103 Identities=26% Similarity=0.565 Sum_probs=95.0
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
|..++.++|++.+.+ .+++++|+||++||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++||+++++
T Consensus 1 v~~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 1 VIVLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp SEEESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred CEECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 467899999999987 4789999999999999999999999999999988999999999999999999999999999998
Q ss_pred CCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+|+ ...++.|..+.+.|.+||+++
T Consensus 80 ~g~--~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGK--EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTE--EEEEEESSSSHHHHHHHHHHH
T ss_pred CCc--EEEEEECCCCHHHHHHHHHcC
Confidence 763 455899999999999999985
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=3.3e-24 Score=148.85 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=90.6
Q ss_pred CceeeecCHHHHHHHHH-cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHH-HhcCCCcccE
Q 041160 73 DYLVKKKTAQEIQELVR-GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFA-RDMQVRGLPT 150 (182)
Q Consensus 73 ~~~v~~~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~-~~~~i~~~Pt 150 (182)
...|.+++.++|.+.+. ...+++++|+|||+||++|+.+.|.++++++++++.+.|++||+|++.+++ ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 34588999999998742 233789999999999999999999999999999888999999999999999 5999999999
Q ss_pred EEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 151 LFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 151 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+++|.+| + ...++.|.++.+.|..|+
T Consensus 88 l~lf~~g-~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRS-R-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECC-c-cceEEeCCCCHHHHHhhC
Confidence 9999765 3 457789999999998763
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.92 E-value=1.2e-24 Score=150.23 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCe
Q 041160 81 AQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNK 160 (182)
Q Consensus 81 ~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~ 160 (182)
.++|++.+....++++||+|||+||+||+.+.|.++++++++++.+.|++||+|++++++++|+|.++||+++|++| +
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G--~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN--K 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC--E
Confidence 56788888765688999999999999999999999999999997789999999999999999999999999999976 3
Q ss_pred eeeeecCCC----------CHHHHHHHHHh
Q 041160 161 DAIRTEGLI----------PIQMMRDIIDN 180 (182)
Q Consensus 161 ~~~~~~g~~----------~~~~l~~~l~~ 180 (182)
.+.+..|.. +.+.+++.++.
T Consensus 80 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 80 HMKIDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEEEEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 445555543 35666666543
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=5.7e-24 Score=144.88 Aligned_cols=98 Identities=16% Similarity=0.269 Sum_probs=89.0
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
+..++.++|++.+.+ +++++|+|||+||++|+.+.|.++++++++++.+.|+.||++++++++++++|.++||+++|+
T Consensus 3 ~~~l~~~~f~~~v~~--~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 3 IVTLDRGDFDAAVNS--GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred eEEcCHhhHHHHhcC--CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 567899999998854 689999999999999999999999999999988999999999999999999999999999997
Q ss_pred CCCCeeeeeecCCCCHHHHHHH
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDI 177 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~ 177 (182)
+| + ...++.|.++.+.|.+|
T Consensus 81 ~g-~-~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SG-M-NPEKYYGDRSKESLVKF 100 (101)
T ss_pred CC-C-CcccCCCCCCHHHHHhh
Confidence 65 3 46788999999998876
No 7
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=6e-24 Score=148.66 Aligned_cols=104 Identities=10% Similarity=0.128 Sum_probs=94.1
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChh--HH--HhHHHHHHHHHHh--cCCcEEEEEECCCcHHHHHhcCCCcc
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGP--CI--LMAQEIELLAVEY--ESSAMIVKVDTDDEYEFARDMQVRGL 148 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~--C~--~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~~~~~~i~~~ 148 (182)
.|..+|+++|++.+.++ +.++|++||+.||+| |+ .+.|.+.+++.++ .+++.|++||+|++++++++|+|.++
T Consensus 10 ~v~~lt~~nF~~~v~~~-~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 10 RVIDLNEKNYKQVLKKY-DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred ceeeCChhhHHHHHHhC-CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 57888999999999876 678999999999988 99 8999999999999 77899999999999999999999999
Q ss_pred cEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 149 PTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 149 Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
||+++|++| + .+ .+.|.++.+.|.+||++++
T Consensus 89 PTl~lfk~G-~-~v-~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKDD-E-VI-EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEECC-E-EE-EeeCCCCHHHHHHHHHHHh
Confidence 999999866 3 33 4899999999999999874
No 8
>PHA02278 thioredoxin-like protein
Probab=99.91 E-value=2.5e-23 Score=142.15 Aligned_cols=94 Identities=13% Similarity=0.248 Sum_probs=82.5
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcCCCcccEEEEEc
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE----YEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~i~~~Pt~~~~~ 155 (182)
+.++|.+.+.+ +++++|+|||+||+||+.+.|.++++++++..++.++.+|+|++ ++++++|+|.++||+++|+
T Consensus 3 ~~~~~~~~i~~--~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 3 SLVDLNTAIRQ--KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred CHHHHHHHHhC--CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 56788888854 78999999999999999999999999988765678999999986 6899999999999999998
Q ss_pred CCCCeeeeeecCCCCHHHHHHH
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDI 177 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~ 177 (182)
+| +.+.+..|..+.+.+.++
T Consensus 81 ~G--~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DG--QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CC--EEEEEEeCCCCHHHHHhh
Confidence 76 467788898888888765
No 9
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.91 E-value=1.4e-23 Score=143.00 Aligned_cols=93 Identities=15% Similarity=0.288 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC-CcHHHHHhcCCCcccEEEEEcCCCCe
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD-DEYEFARDMQVRGLPTLFFISPDPNK 160 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~~~~~~i~~~Pt~~~~~~~g~~ 160 (182)
.++.+++.+.+|++++|+|||+||++|+.++|.+++++++++ ++.++.||.+ ++++++++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--- 82 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--- 82 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC---
Confidence 456677777889999999999999999999999999999997 5889999999 89999999999999999999865
Q ss_pred eeeeecCCCCHHHHHHHH
Q 041160 161 DAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 161 ~~~~~~g~~~~~~l~~~l 178 (182)
...++.|.++.+.|.+||
T Consensus 83 ~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 83 PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ceeEecCCCCHHHHHhhC
Confidence 467889999999999885
No 10
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=3.8e-23 Score=141.53 Aligned_cols=97 Identities=14% Similarity=0.310 Sum_probs=84.0
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH---HHHHhcCCCcccEEEEEcC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY---EFARDMQVRGLPTLFFISP 156 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~~~~~~i~~~Pt~~~~~~ 156 (182)
+.++|++.+.+.+++++||+|||+||++|+.+.|.++++++++ +++.|+.||+|++. +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 5788999998777999999999999999999999999999999 57999999999874 8999999999999999965
Q ss_pred CCCeeeeeecCCCCHHHHHHHHHh
Q 041160 157 DPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 157 ~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
| +...++.|. ..+.+.+.+..
T Consensus 81 G--~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 81 G--EKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred C--eEEEEEeCC-CHHHHHHHHHh
Confidence 4 357788884 66777766654
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=2.2e-23 Score=140.57 Aligned_cols=95 Identities=25% Similarity=0.514 Sum_probs=85.6
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeee
Q 041160 83 EIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDA 162 (182)
Q Consensus 83 ~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~ 162 (182)
+|++.+.+.++++++|+|||+||++|+.+.|.++++++.+++.+.++.+|++++++++++|+|.++||+++|++| +..
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g--~~~ 79 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG--QPV 79 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC--EEe
Confidence 577777766688999999999999999999999999999987889999999999999999999999999999844 356
Q ss_pred eeecCCCCHHHHHHHHH
Q 041160 163 IRTEGLIPIQMMRDIID 179 (182)
Q Consensus 163 ~~~~g~~~~~~l~~~l~ 179 (182)
.++.|..+.++|.++|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 67899999999999874
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.91 E-value=2e-23 Score=143.74 Aligned_cols=103 Identities=24% Similarity=0.452 Sum_probs=93.0
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC--cHHHHHhcCCCcccEEEE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD--EYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~i~~~Pt~~~ 153 (182)
|..++.++|++.+.+. +++++|+|||+||++|+.+.|.++++++.+.+.+.++.+|++. +++++++|+|.++||+++
T Consensus 2 v~~l~~~~~~~~i~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELTPKNFDKVVHNT-NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcchhhHHHHHhcC-CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 5678999999998765 7889999999999999999999999999998889999999999 889999999999999999
Q ss_pred EcCCC---CeeeeeecCCCCHHHHHHHHH
Q 041160 154 ISPDP---NKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 154 ~~~~g---~~~~~~~~g~~~~~~l~~~l~ 179 (182)
|++++ ......+.|.++.+.|.+||.
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHhC
Confidence 99886 235678899999999999973
No 13
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.90 E-value=3.6e-23 Score=148.03 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=89.1
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEE-EEcCCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLF-FISPDP 158 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~-~~~~~g 158 (182)
+.++|++.+.+..++++||+|||+||+||+.+.|.|+++++++++.+.|++||+|++++++++|+|.+.|+++ +|+ +|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk-~g 88 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR-NK 88 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEE-CC
Confidence 6889999998666899999999999999999999999999999877889999999999999999999887777 665 45
Q ss_pred CeeeeeecC--------CCCHHHHHHHHHhh
Q 041160 159 NKDAIRTEG--------LIPIQMMRDIIDNE 181 (182)
Q Consensus 159 ~~~~~~~~g--------~~~~~~l~~~l~~~ 181 (182)
.+...+..| ..+.++|++.++..
T Consensus 89 ~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred eEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 557788888 67889999988754
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.90 E-value=5.4e-23 Score=142.60 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=89.2
Q ss_pred cCHHHHHHHH-HcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCcccEEEEEcC
Q 041160 79 KTAQEIQELV-RGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVRGLPTLFFISP 156 (182)
Q Consensus 79 ~~~~~~~~~l-~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~ 156 (182)
++.++|.+.+ ....+++++|+|||+||++|+.+.|.++++++++++ ++.++.||+++++.++++++|.++||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 4778887644 445689999999999999999999999999999976 59999999999999999999999999999975
Q ss_pred CCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 157 DPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 157 ~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
| +...+..|..+.+.|.++|+++
T Consensus 89 g--~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 89 G--QVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred C--EEEEEecCCCCHHHHHHHHhcC
Confidence 5 4577788989999999999875
No 15
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-22 Score=139.25 Aligned_cols=96 Identities=28% Similarity=0.558 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCee
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKD 161 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~ 161 (182)
.++.....+..+++++|+|||+|||||+.+.|.+++++.+|++ +.|+++|+|+..+++++++|.++||++++++| ..
T Consensus 10 ~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g--~~ 86 (106)
T KOG0907|consen 10 LDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG--EE 86 (106)
T ss_pred HHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECC--EE
Confidence 3333333444479999999999999999999999999999996 99999999999999999999999999999866 46
Q ss_pred eeeecCCCCHHHHHHHHHhh
Q 041160 162 AIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 162 ~~~~~g~~~~~~l~~~l~~~ 181 (182)
+.+..|. ..+.+.+.|+++
T Consensus 87 ~~~~vGa-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 87 VDEVVGA-NKAELEKKIAKH 105 (106)
T ss_pred EEEEecC-CHHHHHHHHHhc
Confidence 7778884 666888888764
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.7e-23 Score=160.23 Aligned_cols=105 Identities=30% Similarity=0.595 Sum_probs=96.9
Q ss_pred eeecCHHHHHHHHH-cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEE
Q 041160 76 VKKKTAQEIQELVR-GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 76 v~~~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 154 (182)
++++|..+|...+. +++.+||+|+||++||++|+.+.|.+++++.+|+|++.+++||||+++.++..|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 88999999998664 55567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
.+|. .+-.+.|..+.+.+++||++++
T Consensus 105 ~dGq--pVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 105 KDGQ--PVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred eCCc--CccccCCCCcHHHHHHHHHHhc
Confidence 8773 6778899999999999999864
No 17
>PRK09381 trxA thioredoxin; Provisional
Probab=99.89 E-value=2.9e-22 Score=138.18 Aligned_cols=105 Identities=25% Similarity=0.527 Sum_probs=93.6
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEE
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 154 (182)
.|..++.++|.+.+.+. +++++|+||++||++|+.+.|.++++++++.+++.++.+|++.++.++++|+|.++||+++|
T Consensus 4 ~v~~~~~~~~~~~v~~~-~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKA-DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred cceeeChhhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 46777889999876543 77899999999999999999999999999988899999999999999999999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
++| +...++.|..+.+.|.++|++.|
T Consensus 83 ~~G--~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNG--EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCC--eEEEEecCCCCHHHHHHHHHHhc
Confidence 754 45678889899999999998764
No 18
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=1.3e-22 Score=139.77 Aligned_cols=100 Identities=19% Similarity=0.365 Sum_probs=88.0
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc------CCcEEEEEECCCcHHHHHhcCCCccc
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYE------SSAMIVKVDTDDEYEFARDMQVRGLP 149 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~~~~~~i~~~P 149 (182)
+..++.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+. +++.++.+|+|++++++++|+|.++|
T Consensus 3 v~~l~~~~f~~~i~~--~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 3 IVSLTSGNIDDILQS--AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred eEEcCHhhHHHHHhc--CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 677899999998855 6789999999999999999999999998763 24889999999999999999999999
Q ss_pred EEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 150 TLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 150 t~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
|+++|.+| +.....+.|.++.+.|.+||
T Consensus 81 tl~~~~~g-~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNG-MMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCC-cCcceecCCCCCHHHHHhhC
Confidence 99999765 43457888999999999885
No 19
>PRK10996 thioredoxin 2; Provisional
Probab=99.89 E-value=3.1e-22 Score=144.09 Aligned_cols=104 Identities=27% Similarity=0.569 Sum_probs=94.2
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEE
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 154 (182)
.+..++.++|++++++ +++++|+||++||++|+.+.|.++++++++.+++.++.+|++++++++++|+|.++||+++|
T Consensus 36 ~~i~~~~~~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~ 113 (139)
T PRK10996 36 EVINATGETLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF 113 (139)
T ss_pred CCEEcCHHHHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence 3556899999998865 78999999999999999999999999999988899999999999999999999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
++| +...++.|..+.+.|.++|++++
T Consensus 114 ~~G--~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 114 KNG--QVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ECC--EEEEEEcCCCCHHHHHHHHHHhC
Confidence 754 35678889999999999999875
No 20
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=2.5e-22 Score=136.64 Aligned_cols=99 Identities=23% Similarity=0.345 Sum_probs=87.3
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
.|..++.++|++.+. ++ ++|+|||+||++|+.+.|.++++++.+++ ++.++.+|+++++.++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 367889999998773 33 78999999999999999999999998865 58999999999999999999999999999
Q ss_pred EcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 154 ISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 154 ~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
+.+| + ..++.|..+.+.|.+||++
T Consensus 78 ~~~g-~--~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDG-V--FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCC-C--EEEecCCCCHHHHHHHHhC
Confidence 9654 3 3678999999999999975
No 21
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.89 E-value=3.2e-22 Score=137.30 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCe
Q 041160 81 AQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNK 160 (182)
Q Consensus 81 ~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~ 160 (182)
.++|++.+.+..+|++||+|||+||+||+.+.|.++++++++++.+.|++||+|+.++++++|+|.+.||+++|.+|...
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46788888766799999999999999999999999999999985599999999999999999999999999999987443
Q ss_pred eeeee-------cCC-CCHHHHHHHHHh
Q 041160 161 DAIRT-------EGL-IPIQMMRDIIDN 180 (182)
Q Consensus 161 ~~~~~-------~g~-~~~~~l~~~l~~ 180 (182)
..-.. .+. .+++++++.++-
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 32222 222 346788887763
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.89 E-value=5.4e-22 Score=135.10 Aligned_cols=101 Identities=23% Similarity=0.371 Sum_probs=91.9
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
|..++.++|++.+.+. +++++|+||++||++|+.+.|.++++++++.+++.++.+|++++.+++++|+|.++|++++|+
T Consensus 2 v~~l~~~~~~~~i~~~-~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVELTDSNFDKKVLNS-DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEcCHHhHHHHHhcC-CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 5678999999988765 667999999999999999999999999999888999999999999999999999999999998
Q ss_pred CCCCeeeeeecCCCCHHHHHHHH
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
++ +.....+.|..+.+.|.+|+
T Consensus 81 ~~-~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 81 AG-KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CC-CcceeecCCCCCHHHHHHHh
Confidence 76 34677889999999999986
No 23
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.89 E-value=6.6e-22 Score=135.11 Aligned_cols=97 Identities=18% Similarity=0.378 Sum_probs=85.1
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCCcccEEEEEcCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESS-AMIVKVDTDDEYEFARDMQVRGLPTLFFISPD 157 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~ 157 (182)
.|.++|++++.+ +++++|+|||+||++|+.+.|.+++++++++++ +.|+.+|+| +.+++++|+|.++||+++|++|
T Consensus 5 ~~~~~~~~~i~~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSN--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHcc--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 488899998864 889999999999999999999999999999854 789999999 7789999999999999999865
Q ss_pred CCeeeeeecCCCCHHHHHHHHHhh
Q 041160 158 PNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 158 g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+...+..| .+.+.+.++|+++
T Consensus 82 --~~~~~~~G-~~~~~~~~~i~~~ 102 (102)
T cd02948 82 --ELVAVIRG-ANAPLLNKTITEL 102 (102)
T ss_pred --EEEEEEec-CChHHHHHHHhhC
Confidence 35667778 4889999999864
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=3.9e-22 Score=135.54 Aligned_cols=98 Identities=27% Similarity=0.537 Sum_probs=87.6
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCcccEEE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEYEFARDMQVRGLPTLF 152 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~i~~~Pt~~ 152 (182)
+..++.++|++.+.+ + .++|+|||+||++|+.+.|.++++++++++ ++.++.+|++++.+++++|+|.++||++
T Consensus 2 ~~~l~~~~f~~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 2 VLELTEDNFDHHIAE--G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLL 78 (102)
T ss_pred eeECCHHHHHHHhhc--C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEE
Confidence 567899999999865 4 499999999999999999999999999976 6899999999999999999999999999
Q ss_pred EEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 153 FISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 153 ~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+|++| + ...++.|..+.+.|.+||
T Consensus 79 ~~~~g-~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 79 LFKDG-E-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEeCC-C-eeeEeeCCCCHHHHHhhC
Confidence 99755 3 567889999999988875
No 25
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.89 E-value=4.7e-22 Score=134.86 Aligned_cols=100 Identities=29% Similarity=0.572 Sum_probs=91.3
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCcccEEEEEcC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES--SAMIVKVDTDDEYEFARDMQVRGLPTLFFISP 156 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~ 156 (182)
+++++|++.+. ++++++|+||++||++|+.+.+.++++++.+++ ++.++.+|+++++.++++|+|.++|++++|++
T Consensus 1 l~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 1 LTASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred CchhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence 46788998886 488999999999999999999999999999987 59999999999999999999999999999998
Q ss_pred CCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 157 DPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 157 ~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
|+. ..++.|..+.++|.+||++++
T Consensus 79 ~~~--~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 79 GKK--PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CCc--ceeecCCCCHHHHHHHHHhcC
Confidence 853 678899999999999999864
No 26
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.88 E-value=1.3e-21 Score=150.54 Aligned_cols=106 Identities=20% Similarity=0.376 Sum_probs=94.0
Q ss_pred ceeeecCHHHHHHHHHcC---CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccE
Q 041160 74 YLVKKKTAQEIQELVRGE---RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPT 150 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~~~---~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt 150 (182)
..+..+++++|++.+... .+++++|+|||+||++|+.+.|.++++++++++.+.++.+|++++++++++|+|.++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 358889999999988643 25799999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 151 LFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 151 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+++|++| ....+..|.++.++|.+|+.+.
T Consensus 110 l~~f~~G--~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 110 LLLFDKG--KMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred EEEEECC--EEEEeeCCCCCHHHHHHHHHHH
Confidence 9999965 3455567889999999998764
No 27
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.87 E-value=1.8e-21 Score=140.56 Aligned_cols=98 Identities=23% Similarity=0.498 Sum_probs=84.1
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc--HHHHHhcCCCcccEEEEEcCCCC
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE--YEFARDMQVRGLPTLFFISPDPN 159 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~i~~~Pt~~~~~~~g~ 159 (182)
.++++.+.. ++++||+|||+||++|+.+.|.++++++++.+++.|+.||+|.. .+++++|+|.++||+++|+++|+
T Consensus 11 ~~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 11 TPPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred CCHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 455555544 88999999999999999999999999999987788888888865 58899999999999999987664
Q ss_pred eeeeeecCCCCHHHHHHHHHhhC
Q 041160 160 KDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 160 ~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
.+.++.|..+.+.|.++|++++
T Consensus 89 -~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 89 -EEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred -EEEEEeCCCCHHHHHHHHHHHH
Confidence 5678889999999999998763
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.87 E-value=2.3e-21 Score=133.93 Aligned_cols=103 Identities=24% Similarity=0.488 Sum_probs=88.6
Q ss_pred eeeecCHHHHHHHHH-cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-cHHHHH-hcCCCcccE
Q 041160 75 LVKKKTAQEIQELVR-GERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-EYEFAR-DMQVRGLPT 150 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-~~~~~~-~~~i~~~Pt 150 (182)
.|..++.++|+.++. ..++++++|.||++||++|+.+.|.++++++.+++ ++.++.||+|. +..++. .++|.++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 367889999998875 33578999999999999999999999999999986 48999999998 577776 599999999
Q ss_pred EEEEcCCCCeeeeeecCC-CCHHHHHHHH
Q 041160 151 LFFISPDPNKDAIRTEGL-IPIQMMRDII 178 (182)
Q Consensus 151 ~~~~~~~g~~~~~~~~g~-~~~~~l~~~l 178 (182)
+++|+++++ ....|.|. ++.+.|..||
T Consensus 82 i~~f~~~~~-~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSR-QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCC-CceeccCCCCCHHHHHhhC
Confidence 999988764 56778884 7999998875
No 29
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.87 E-value=2.3e-21 Score=131.95 Aligned_cols=101 Identities=27% Similarity=0.562 Sum_probs=89.7
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES--SAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
|..++.++|++.+.+. +++++|+||++||++|+.+.|.++++++.+++ ++.++.+|++++ +++..+++.++||+++
T Consensus 2 v~~l~~~~f~~~i~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVVVGKNFDEVVLDS-DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEEchhhhHHHHhCC-CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 5678999999988776 68999999999999999999999999999976 589999999987 6888999999999999
Q ss_pred EcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 154 ISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 154 ~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
|.+|++....++.|..+.+.|.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 9887634567889999999999885
No 30
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.87 E-value=5.9e-21 Score=129.01 Aligned_cols=101 Identities=30% Similarity=0.686 Sum_probs=89.9
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
++.++|.+.+.+. +++++|+||++||++|+.+.|.++++++++++++.++.+|+++++.++++|+|.++|+++++++|
T Consensus 1 i~~~~~~~~~~~~-~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g- 78 (101)
T TIGR01068 1 LTDANFDETIASS-DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG- 78 (101)
T ss_pred CCHHHHHHHHhhc-CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC-
Confidence 3677888888754 67999999999999999999999999999987899999999999999999999999999999755
Q ss_pred CeeeeeecCCCCHHHHHHHHHhhC
Q 041160 159 NKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 159 ~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
+ ...++.|..+.+.+.++|++.+
T Consensus 79 ~-~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 79 K-EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred c-EeeeecCCCCHHHHHHHHHhhC
Confidence 3 4567788899999999999865
No 31
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.87 E-value=5.2e-21 Score=139.15 Aligned_cols=103 Identities=19% Similarity=0.352 Sum_probs=87.7
Q ss_pred ceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCc-----
Q 041160 74 YLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVRG----- 147 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~----- 147 (182)
..+..++.++|++.+...++++++|+|||+||++|+.+.|.++++++++++ ++.|+.||+|++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 467888999999988776678999999999999999999999999999975 59999999999999999999988
Q ss_pred -ccEEEEEcCCCCeeeeeecC-----------CCCHHHHHHHH
Q 041160 148 -LPTLFFISPDPNKDAIRTEG-----------LIPIQMMRDII 178 (182)
Q Consensus 148 -~Pt~~~~~~~g~~~~~~~~g-----------~~~~~~l~~~l 178 (182)
+||+++|++| +...+..| ..+.++++..+
T Consensus 108 ~~PT~ilf~~G--k~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 108 QLPTIILFQGG--KEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred CCCEEEEEECC--EEEEEEeccccCccccccccccHHHHHHhc
Confidence 9999999865 35556664 45666666543
No 32
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.87 E-value=3.9e-21 Score=130.98 Aligned_cols=99 Identities=21% Similarity=0.461 Sum_probs=87.6
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc--CCcEEEEEECCC--cHHHHHhcCCCcccEE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYE--SSAMIVKVDTDD--EYEFARDMQVRGLPTL 151 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~--~~~~~~~~~i~~~Pt~ 151 (182)
+..++..+|++.+++ +++++|+||++||++|+.+.|.++++++.+. +.+.++.+|+++ ++.++++++|.++||+
T Consensus 2 ~~~l~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 2 VVHLTDEDFRKFLKK--EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred eEEechHhHHHHHhh--CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 567788999998876 5689999999999999999999999999987 468899999998 9999999999999999
Q ss_pred EEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 152 FFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 152 ~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+++++| + ...++.|..+.+.+.+||
T Consensus 80 ~~~~~g-~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENG-K-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCC-C-eeEEeCCCCCHHHHHhhC
Confidence 999865 3 467888999999998875
No 33
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.86 E-value=3.2e-21 Score=131.43 Aligned_cols=101 Identities=29% Similarity=0.595 Sum_probs=89.7
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc--CCcEEEEEECCC-cHHHHHhcCCCcccEEE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYE--SSAMIVKVDTDD-EYEFARDMQVRGLPTLF 152 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-~~~~~~~~~i~~~Pt~~ 152 (182)
+..++.++|++.+.+. +++++|+||++||++|+.+.|.++++++.++ +++.++.+|+++ +++++++|+|.++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 2 VVELTDSNFDKVVGDD-KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred eEEcchhcHHHHhcCC-CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 4567889999877654 6789999999999999999999999999987 469999999999 99999999999999999
Q ss_pred EEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 153 FISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 153 ~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+|+++|. ....+.|..+.+.|.+||
T Consensus 81 ~~~~~~~-~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 81 FFPKGST-EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEeCCCC-CccccCCccCHHHHHhhC
Confidence 9998763 567788999999998875
No 34
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.86 E-value=5e-21 Score=130.95 Aligned_cols=95 Identities=17% Similarity=0.450 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCcccEEEEE
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDD----EYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~i~~~Pt~~~~ 154 (182)
++|.+.+.+ +++++|+||++||++|+.+.+.+ .++++.+++++.++.+|+++ ..+++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~--~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALAQ--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHHc--CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 456777655 78999999999999999999988 68888887789999999987 5789999999999999999
Q ss_pred cC-CCCeeeeeecCCCCHHHHHHHHH
Q 041160 155 SP-DPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 155 ~~-~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
++ +|+ ...++.|..+.++|.++|+
T Consensus 80 ~~~~g~-~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEP-EPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCC-CCcccccccCHHHHHHHhC
Confidence 96 443 6778899999999999874
No 35
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.86 E-value=6.9e-21 Score=130.73 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=86.2
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCC--ChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATW--CGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~w--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
...++..+|++.+.. +.++||+||++| |++|+.+.|.+++++++|++.+.|+.+|+|++++++.+|+|.++||+++
T Consensus 12 ~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 12 WPRVDAATLDDWLAA--GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred CcccccccHHHHHhC--CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 345688999988843 778999999997 9999999999999999999889999999999999999999999999999
Q ss_pred EcCCCCeeeeeecCCCCHHHHHH
Q 041160 154 ISPDPNKDAIRTEGLIPIQMMRD 176 (182)
Q Consensus 154 ~~~~g~~~~~~~~g~~~~~~l~~ 176 (182)
|++| +...+..|..+.+++.+
T Consensus 90 fkdG--k~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 90 FRDG--RYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EECC--EEEEEEeCccCHHHHhh
Confidence 9976 46778889888887753
No 36
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.85 E-value=1.9e-20 Score=126.23 Aligned_cols=96 Identities=22% Similarity=0.465 Sum_probs=83.5
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPN 159 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~ 159 (182)
+.++|++.+.+..+++++|+||++||++|+.+.|.++++++++.+++.++.+|+++.++++++|+|.++||+++|++|
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-- 78 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG-- 78 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC--
Confidence 457888888876679999999999999999999999999999766899999999999999999999999999999754
Q ss_pred eeeeeecCCCCHHHHHHHH
Q 041160 160 KDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 160 ~~~~~~~g~~~~~~l~~~l 178 (182)
+...+..| ...+.|.+.|
T Consensus 79 ~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEEeC-CCHHHHHHhh
Confidence 35667777 4677777765
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.85 E-value=1.5e-20 Score=128.63 Aligned_cols=94 Identities=23% Similarity=0.425 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
++|++. .+ +++++|.|||+||++|+.+.|.++++++++++ .+.++.+|+++.++++++|+|.++||+++|+++
T Consensus 7 ~~~~~~-~~--~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~- 82 (104)
T cd03000 7 DSFKDV-RK--EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD- 82 (104)
T ss_pred hhhhhh-cc--CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-
Confidence 566653 22 56899999999999999999999999999853 488999999999999999999999999999643
Q ss_pred CeeeeeecCCCCHHHHHHHHHhh
Q 041160 159 NKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 159 ~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
...++.|..+.+.|.+++++.
T Consensus 83 --~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 --LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --CceeecCCCCHHHHHHHHHhh
Confidence 345688999999999999874
No 38
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.85 E-value=2.2e-20 Score=125.58 Aligned_cols=98 Identities=30% Similarity=0.622 Sum_probs=88.2
Q ss_pred ecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHh--cCCcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 78 KKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEY--ESSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 78 ~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
.++.++|.+.+.+ +++++|+||++||++|+.+.|.++++++.+ .+.+.++.+|++++..++++|+|.++||+++|+
T Consensus 2 ~l~~~~~~~~i~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 2 ELTDDNFDELVKD--SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred cccHHHHHHHHhC--CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEc
Confidence 4688899999887 448999999999999999999999999999 467999999999999999999999999999999
Q ss_pred CCCCeeeeeecCCCCHHHHHHHH
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
++| ....++.|..+.+++.+|+
T Consensus 80 ~~~-~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 80 NGS-KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCC-cccccCCCCcCHHHHHhhC
Confidence 875 4677888988999988874
No 39
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.84 E-value=7.5e-20 Score=123.70 Aligned_cols=92 Identities=21% Similarity=0.413 Sum_probs=81.9
Q ss_pred HHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeee
Q 041160 85 QELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIR 164 (182)
Q Consensus 85 ~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~ 164 (182)
+..+.+ .+++++++||++||+.|+.+.|.++++++++.+++.++.+|+++++++.++++|.++|+++++++ | +...+
T Consensus 6 ~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~-g-~~v~~ 82 (97)
T cd02949 6 RKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKD-K-ELVKE 82 (97)
T ss_pred HHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEEC-C-eEEEE
Confidence 344444 38899999999999999999999999999998789999999999999999999999999999975 4 46788
Q ss_pred ecCCCCHHHHHHHHH
Q 041160 165 TEGLIPIQMMRDIID 179 (182)
Q Consensus 165 ~~g~~~~~~l~~~l~ 179 (182)
+.|..+.+++.++|+
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 899999999999874
No 40
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.84 E-value=8.2e-20 Score=126.95 Aligned_cols=90 Identities=20% Similarity=0.367 Sum_probs=78.6
Q ss_pred eeeecCHHHHHHHHHcCC-CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 75 LVKKKTAQEIQELVRGER-NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
.+..++.++|.+.+.+.+ +++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++ +++++|+|.++||+++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 567788899999887643 5899999999999999999999999999997 589999999999 9999999999999999
Q ss_pred EcCCCCeeeeeecCC
Q 041160 154 ISPDPNKDAIRTEGL 168 (182)
Q Consensus 154 ~~~~g~~~~~~~~g~ 168 (182)
|++| +...+..|.
T Consensus 83 f~~G--~~v~~~~G~ 95 (113)
T cd02957 83 YKNG--ELIDNIVGF 95 (113)
T ss_pred EECC--EEEEEEecH
Confidence 9876 355566553
No 41
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=7.1e-20 Score=129.27 Aligned_cols=98 Identities=20% Similarity=0.402 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCC-CcEEEEEEcCCChhHHHhHHHHH---HHHHHhcCCcEEEEEECCCc-------------HHHHHhcC
Q 041160 82 QEIQELVRGERN-VPIIIDFYATWCGPCILMAQEIE---LLAVEYESSAMIVKVDTDDE-------------YEFARDMQ 144 (182)
Q Consensus 82 ~~~~~~l~~~~~-k~vvv~F~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~-------------~~~~~~~~ 144 (182)
+++++.+++ + |+++|+||++||++|+.+.|.+. ++.+.+.+++.++.+|++.+ .+++.+|+
T Consensus 4 ~~~~~a~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 4 EDLAEAAAD--GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred HHHHHHHHc--CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 455555555 7 89999999999999999999884 67777766788999999864 68999999
Q ss_pred CCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 145 VRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 145 i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
|.++||+++++++|.+.+.+..|..+.+.+.++|+.+
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 9999999999987334677899999999999998865
No 42
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.83 E-value=2e-19 Score=125.03 Aligned_cols=94 Identities=19% Similarity=0.373 Sum_probs=79.0
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPN 159 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~ 159 (182)
+.++|.+.+.+ +++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||+++|++|
T Consensus 11 ~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G-- 85 (113)
T cd02989 11 DEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNG-- 85 (113)
T ss_pred CHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEEECC--
Confidence 44899999876 5689999999999999999999999999997 599999999999999999999999999999976
Q ss_pred eeeeeecCC--------CCHHHHHHHH
Q 041160 160 KDAIRTEGL--------IPIQMMRDII 178 (182)
Q Consensus 160 ~~~~~~~g~--------~~~~~l~~~l 178 (182)
+.+.++.|. .+.+.+..+|
T Consensus 86 ~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 86 KTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEEEECccccCCCCCCCHHHHHHHh
Confidence 344454433 3455665554
No 43
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.83 E-value=7.4e-20 Score=127.21 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=78.8
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHH
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQ 172 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~ 172 (182)
++.++|+||++||++|+.+.|.+++++..+ +++.++.+|+|++++++++|+|.++||++++++|+.....++.|..+.+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~ 100 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY 100 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence 566899999999999999999999999887 5799999999999999999999999999999876543344788988999
Q ss_pred HHHHHHHhhC
Q 041160 173 MMRDIIDNEM 182 (182)
Q Consensus 173 ~l~~~l~~~l 182 (182)
++.++|+.++
T Consensus 101 el~~~i~~i~ 110 (113)
T cd02975 101 EFASLIEDIV 110 (113)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 44
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.82 E-value=3e-19 Score=149.89 Aligned_cols=109 Identities=21% Similarity=0.400 Sum_probs=92.7
Q ss_pred cCceeeecCHHHHHHHHH-cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCC-cEEEEEECCCcH-HH-HHhcCCCc
Q 041160 72 EDYLVKKKTAQEIQELVR-GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESS-AMIVKVDTDDEY-EF-ARDMQVRG 147 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~-~~-~~~~~i~~ 147 (182)
.+..|..++.++|++.+. ...++++||+|||+||++|+.+.|.|+++++++.+. +.|+.||+|.+. ++ +++|+|.+
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 344788899999999986 556899999999999999999999999999999864 899999999764 44 47899999
Q ss_pred ccEEEEEcCCCCeeeeeec-CCCCHHHHHHHHHhh
Q 041160 148 LPTLFFISPDPNKDAIRTE-GLIPIQMMRDIIDNE 181 (182)
Q Consensus 148 ~Pt~~~~~~~g~~~~~~~~-g~~~~~~l~~~l~~~ 181 (182)
+||+++|++|+. ....|. |.++.+.|..||+-+
T Consensus 429 ~PTii~Fk~g~~-~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSS-RPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCC-CceeCCCCCCCHHHHHHHHHhh
Confidence 999999998753 345675 579999999999854
No 45
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=5.1e-19 Score=123.16 Aligned_cols=100 Identities=26% Similarity=0.522 Sum_probs=80.9
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECC--CcHHHHHhcCCCcccE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTD--DEYEFARDMQVRGLPT 150 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d--~~~~~~~~~~i~~~Pt 150 (182)
+..++.++|++.+.+. +++++|+||++||++|+.+.|.++++++++++ .+.++.+||+ ++.+++++|+|.++||
T Consensus 3 v~~l~~~~f~~~i~~~-~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 3 VIVLDAASFNSALLGS-PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred eEECCHHhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 6788999999999876 48999999999999999999999999998753 4889999986 4678999999999999
Q ss_pred EEEEcCCCCeee--eeecCC-CCHHHHHH
Q 041160 151 LFFISPDPNKDA--IRTEGL-IPIQMMRD 176 (182)
Q Consensus 151 ~~~~~~~g~~~~--~~~~g~-~~~~~l~~ 176 (182)
+++|++++.... ..+.|. +..+.+++
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 999988753221 344454 45555543
No 46
>PLN02309 5'-adenylylsulfate reductase
Probab=99.81 E-value=5.3e-19 Score=148.29 Aligned_cols=108 Identities=22% Similarity=0.444 Sum_probs=93.4
Q ss_pred CceeeecCHHHHHHHHH-cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECC-CcHHHHH-hcCCCcc
Q 041160 73 DYLVKKKTAQEIQELVR-GERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTD-DEYEFAR-DMQVRGL 148 (182)
Q Consensus 73 ~~~v~~~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~~~~~~-~~~i~~~ 148 (182)
+..|..++.++|++++. ...++++||+|||+||++|+.+.|.++++++++.+ ++.|+.+|+| .+.+++. +|+|.++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 34688899999999885 44589999999999999999999999999999976 4999999999 7788886 6999999
Q ss_pred cEEEEEcCCCCeeeeeec-CCCCHHHHHHHHHhh
Q 041160 149 PTLFFISPDPNKDAIRTE-GLIPIQMMRDIIDNE 181 (182)
Q Consensus 149 Pt~~~~~~~g~~~~~~~~-g~~~~~~l~~~l~~~ 181 (182)
||+++|.++.. ....|. |.++.+.|.+||+.+
T Consensus 424 PTil~f~~g~~-~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 424 PTILLFPKNSS-RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eEEEEEeCCCC-CeeecCCCCcCHHHHHHHHHHh
Confidence 99999987754 345565 579999999999875
No 47
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2e-19 Score=137.01 Aligned_cols=102 Identities=24% Similarity=0.431 Sum_probs=90.1
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
+..-++.+|+..+....+|.++|+|+|+|||||+++.|.+..++.+|+ +..|++||+|+.+..+..+||.+.||+++|.
T Consensus 4 i~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 4 IVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred EEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 334477899999988878999999999999999999999999999997 6999999999999999999999999999999
Q ss_pred CCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
++. .+..+.| .++.-|.+.+.++
T Consensus 83 ng~--kid~~qG-Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 83 NGV--KIDQIQG-ADASGLEEKVAKY 105 (288)
T ss_pred cCe--EeeeecC-CCHHHHHHHHHHH
Confidence 873 4556677 5888888888775
No 48
>PTZ00051 thioredoxin; Provisional
Probab=99.80 E-value=1.4e-18 Score=117.33 Aligned_cols=91 Identities=29% Similarity=0.487 Sum_probs=78.3
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
.+.+++.+++.. +++++|+||++||++|+.+.|.+++++++++ ++.++.+|++++.+++++|+|.++||++++++|
T Consensus 6 ~~~~~~~~~~~~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g- 81 (98)
T PTZ00051 6 TSQAEFESTLSQ--NELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNG- 81 (98)
T ss_pred cCHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCC-
Confidence 366788888765 7799999999999999999999999999886 599999999999999999999999999999755
Q ss_pred CeeeeeecCCCCHHHHH
Q 041160 159 NKDAIRTEGLIPIQMMR 175 (182)
Q Consensus 159 ~~~~~~~~g~~~~~~l~ 175 (182)
+...++.|. ..++|.
T Consensus 82 -~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 82 -SVVDTLLGA-NDEALK 96 (98)
T ss_pred -eEEEEEeCC-CHHHhh
Confidence 356777884 556654
No 49
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=150.55 Aligned_cols=106 Identities=27% Similarity=0.465 Sum_probs=96.0
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCcc
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEYEFARDMQVRGL 148 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~i~~~ 148 (182)
....|..++.++|.+.+.. ...++|.|||+||+||+++.|.+++.+..+.. .+.+++|||+++.+++.+|+|.++
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~--~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy 100 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETING--HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY 100 (493)
T ss_pred cccceEEEecccHHHHhcc--CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC
Confidence 3457899999999999987 55789999999999999999999999999875 588999999999999999999999
Q ss_pred cEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 149 PTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 149 Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
||+.+|++|.. ...|.|.++.+.|..|+++.
T Consensus 101 PTlkiFrnG~~--~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 101 PTLKIFRNGRS--AQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred CeEEEEecCCc--ceeccCcccHHHHHHHHHhc
Confidence 99999998742 67899999999999999864
No 50
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.80 E-value=7e-19 Score=121.92 Aligned_cols=100 Identities=6% Similarity=0.179 Sum_probs=83.3
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEc--CCCh---hHHHhHHHHHHHHHHhcCCcEEEEEEC-----CCcHHHHHhcCC
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYA--TWCG---PCILMAQEIELLAVEYESSAMIVKVDT-----DDEYEFARDMQV 145 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a--~wC~---~C~~~~p~l~~l~~~~~~~v~~~~vd~-----d~~~~~~~~~~i 145 (182)
+..++..+|++.+.+ .+.++|.||| +||+ +|+.+.|++.+.+. .+.++.||| .++.+++++|+|
T Consensus 3 ~v~L~~~nF~~~v~~--~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 3 CVDLDTVTFYKVIPK--FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eeECChhhHHHHHhc--CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence 567899999999977 5679999999 9999 77777777766543 488999999 467899999999
Q ss_pred C--cccEEEEEcCCCCeeeeeecCC-CCHHHHHHHHHhh
Q 041160 146 R--GLPTLFFISPDPNKDAIRTEGL-IPIQMMRDIIDNE 181 (182)
Q Consensus 146 ~--~~Pt~~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~~ 181 (182)
. ++||+.+|.+|+......|.|. ++.+.|.+||+++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 9999999997643334678896 9999999999874
No 51
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.79 E-value=2.8e-18 Score=120.79 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=79.3
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-----------HHHHhcC
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-----------EFARDMQ 144 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----------~~~~~~~ 144 (182)
+..++.+++.+.+.+ ++.++|+||++|||+|+.+.|.|++++++. ++.++.+|+|.+. ++.++|+
T Consensus 8 ~~~it~~~~~~~i~~--~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 8 LEVTTVVRALEALDK--KETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ceecCHHHHHHHHHc--CCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 456788999999976 778999999999999999999999999983 5778888888543 5567765
Q ss_pred ----CCcccEEEEEcCCCCeeeeeecC-CCCHHHHHHHHH
Q 041160 145 ----VRGLPTLFFISPDPNKDAIRTEG-LIPIQMMRDIID 179 (182)
Q Consensus 145 ----i~~~Pt~~~~~~~g~~~~~~~~g-~~~~~~l~~~l~ 179 (182)
|.++||+++|++| +.+.+..| ..+.++|.+++.
T Consensus 84 i~~~i~~~PT~v~~k~G--k~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDG--KQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCC--eEEEEEeCCCCCHHHHHHHhh
Confidence 5569999999876 35566777 567999998874
No 52
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=1.2e-18 Score=148.05 Aligned_cols=107 Identities=20% Similarity=0.439 Sum_probs=96.1
Q ss_pred CceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCcccE
Q 041160 73 DYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES--SAMIVKVDTDDEYEFARDMQVRGLPT 150 (182)
Q Consensus 73 ~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt 150 (182)
+..+..+++++|++.+.+. +++++|+|||+||++|+.+.|.++++++.+++ .+.++.+|++.+...++++++.++||
T Consensus 356 ~~~v~~l~~~~f~~~v~~~-~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt 434 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKS-DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434 (477)
T ss_pred CCCeEEecccchHHHHhcC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCe
Confidence 4568899999999987654 78999999999999999999999999999875 48899999999999999999999999
Q ss_pred EEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 151 LFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 151 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+++|++|++ ...++.|.++.+.+.+||+++
T Consensus 435 ~~~~~~~~~-~~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 435 ILFVKAGER-TPIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred EEEEECCCc-ceeEecCcCCHHHHHHHHHHc
Confidence 999998754 456789999999999999876
No 53
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.79 E-value=3.7e-18 Score=127.23 Aligned_cols=104 Identities=12% Similarity=0.193 Sum_probs=85.7
Q ss_pred ceeeecCH-HHHHHHHHcC-CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEE
Q 041160 74 YLVKKKTA-QEIQELVRGE-RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTL 151 (182)
Q Consensus 74 ~~v~~~~~-~~~~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~ 151 (182)
..+..++. ++|.+.+.+. +++++||+||++||++|+.+.|.|++++++|+ .+.|++||+++. +++.+|+|.++||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 35667777 9999988654 35699999999999999999999999999997 699999999988 89999999999999
Q ss_pred EEEcCCCCeeeeeecC-------CCCHHHHHHHHHhh
Q 041160 152 FFISPDPNKDAIRTEG-------LIPIQMMRDIIDNE 181 (182)
Q Consensus 152 ~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~~ 181 (182)
++|.+| +.+.++.| ..+.+.|..+|.++
T Consensus 140 llyk~G--~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 140 LVYKGG--ELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEECC--EEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999876 33444433 35677887777653
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.78 E-value=2.3e-18 Score=145.36 Aligned_cols=105 Identities=24% Similarity=0.421 Sum_probs=92.8
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCcccEE
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEYEFARDMQVRGLPTL 151 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~i~~~Pt~ 151 (182)
.|..++.++|++.+.+ +++++|.|||+||++|+.+.|.+.++++.+.+ ++.++.|||+++++++++|+|.++||+
T Consensus 2 ~v~~l~~~~~~~~i~~--~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKS--HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTL 79 (462)
T ss_pred CceECCHHHHHHHHhc--CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEE
Confidence 3677899999999876 67899999999999999999999999988764 389999999999999999999999999
Q ss_pred EEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 152 FFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 152 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
++|.+|+ ....++.|.++.+.|.+|+++++
T Consensus 80 ~~~~~g~-~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 80 KIFRNGE-DSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred EEEeCCc-cceeEecCCCCHHHHHHHHHHhc
Confidence 9998663 22577899999999999998753
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=3.3e-18 Score=145.41 Aligned_cols=102 Identities=26% Similarity=0.456 Sum_probs=91.5
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc---CCcEEEEEECCCcHHHHHhcCCCcccEE
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYE---SSAMIVKVDTDDEYEFARDMQVRGLPTL 151 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~~~~~~i~~~Pt~ 151 (182)
.+..++.++|++.+.+ ++.++|+|||+||++|+++.|.++++++.+. +++.++.|||+++.+++++|+|.++||+
T Consensus 33 ~v~~l~~~~f~~~i~~--~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 33 HVTVLTDSTFDKFITE--NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CcEEcchhhHHHHHhc--CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 4778899999999876 6789999999999999999999999998775 3599999999999999999999999999
Q ss_pred EEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 152 FFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 152 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
++|++|+ .. ++.|.++.+.|.+|++++
T Consensus 111 ~~~~~g~--~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 111 KFFNKGN--PV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred EEEECCc--eE-EecCCCCHHHHHHHHHHh
Confidence 9999774 23 789999999999999876
No 56
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-18 Score=145.66 Aligned_cols=105 Identities=25% Similarity=0.536 Sum_probs=94.1
Q ss_pred ceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC--CcEEEEEECCCcHHHHHhcCCCcccEE
Q 041160 74 YLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES--SAMIVKVDTDDEYEFARDMQVRGLPTL 151 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~i~~~Pt~ 151 (182)
..|+.+.+++|++++.+. +|-|+|.|||+|||||+++.|.+++|++.|++ ++.++++|.+.+. ....+++++||+
T Consensus 366 ~pVkvvVgknfd~iv~de-~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI 442 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDE-GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTI 442 (493)
T ss_pred CCeEEEeecCHHHHhhcc-ccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceE
Confidence 459999999999998766 78899999999999999999999999999987 5999999999886 455677889999
Q ss_pred EEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 152 FFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 152 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+++..|++...+.|.|.++.+++..||++.
T Consensus 443 ~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 443 LFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred EEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 999999877788899999999999999763
No 57
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.76 E-value=8.4e-18 Score=117.34 Aligned_cols=96 Identities=19% Similarity=0.397 Sum_probs=78.4
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEc-------CCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC-------cHHHHHhcCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYA-------TWCGPCILMAQEIELLAVEYESSAMIVKVDTDD-------EYEFARDMQV 145 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~~~~~~i 145 (182)
+.++|.+.+.+.++++++|+||| +||++|+.+.|.++++++++++++.|+.||+++ +.++..+++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 77889999987778999999999 999999999999999999998779999999976 4689999999
Q ss_pred C-cccEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 146 R-GLPTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 146 ~-~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
. ++||++++++++ +.+. ..-...+.+..|+
T Consensus 88 ~~~iPT~~~~~~~~-~l~~--~~c~~~~~~~~~~ 118 (119)
T cd02952 88 TTGVPTLLRWKTPQ-RLVE--DECLQADLVEMFF 118 (119)
T ss_pred ccCCCEEEEEcCCc-eecc--hhhcCHHHHHHhh
Confidence 8 999999997653 2211 1223555555554
No 58
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.76 E-value=1.6e-17 Score=109.56 Aligned_cols=92 Identities=36% Similarity=0.725 Sum_probs=80.4
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeee
Q 041160 83 EIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDA 162 (182)
Q Consensus 83 ~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~ 162 (182)
+|++.+.+ +++++|+||++||++|+.+.+.++++++. .+++.++.+|++.+.+++++|++.++|+++++++| ...
T Consensus 2 ~~~~~~~~--~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g--~~~ 76 (93)
T cd02947 2 EFEELIKS--AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG--KEV 76 (93)
T ss_pred chHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECC--EEE
Confidence 45666665 47899999999999999999999999998 55799999999999999999999999999999866 356
Q ss_pred eeecCCCCHHHHHHHHH
Q 041160 163 IRTEGLIPIQMMRDIID 179 (182)
Q Consensus 163 ~~~~g~~~~~~l~~~l~ 179 (182)
..+.|..+.+.|.++|+
T Consensus 77 ~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 77 DRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEecCCCHHHHHHHhC
Confidence 77788888899988874
No 59
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.76 E-value=1.2e-17 Score=121.66 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=71.4
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc------------HHHH-Hhc---CCCcccEEEEEcC
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE------------YEFA-RDM---QVRGLPTLFFISP 156 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~~-~~~---~i~~~Pt~~~~~~ 156 (182)
++..+|+|||+||++|++++|.+++++++++ +.++.|+.|.. .+.. ..| ++.++||++++++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4567999999999999999999999999984 55666666542 2333 345 8899999999999
Q ss_pred CCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 157 DPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 157 ~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
+|++....+.|..+.+++.+.|+++|
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 87765667889999999999998875
No 60
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.74 E-value=3.2e-17 Score=107.04 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=72.2
Q ss_pred EEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHH
Q 041160 96 IIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMR 175 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~ 175 (182)
.|..||++||++|+.+.|.++++++++++++.++.||++++++++++|++.++||+++ +| + .++.|..+.+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~---~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D---VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E---EEEecCCCHHHHH
Confidence 4778999999999999999999999998779999999999999999999999999986 33 2 2677988999999
Q ss_pred HHHHhhC
Q 041160 176 DIIDNEM 182 (182)
Q Consensus 176 ~~l~~~l 182 (182)
++|++.|
T Consensus 76 ~~l~~~~ 82 (82)
T TIGR00411 76 EAIKKRL 82 (82)
T ss_pred HHHHhhC
Confidence 9998865
No 61
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.74 E-value=2.6e-17 Score=112.02 Aligned_cols=90 Identities=16% Similarity=0.287 Sum_probs=78.7
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCC--cccEEEEEcCCCCeeeeeecCCCC
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVR--GLPTLFFISPDPNKDAIRTEGLIP 170 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~--~~Pt~~~~~~~g~~~~~~~~g~~~ 170 (182)
++++++.|+++||++|+.+.|.++++++++++++.|+.+|+++++.+++.|++. ++|++++++.+++.......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999989999999999999999999999 999999999842223333445459
Q ss_pred HHHHHHHHHhhC
Q 041160 171 IQMMRDIIDNEM 182 (182)
Q Consensus 171 ~~~l~~~l~~~l 182 (182)
.+.|.+||++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999999864
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.73 E-value=9e-18 Score=117.39 Aligned_cols=98 Identities=17% Similarity=0.381 Sum_probs=70.2
Q ss_pred HHHHHHH--cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-HHHHhcCCCc--ccEEEEEcCC
Q 041160 83 EIQELVR--GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-EFARDMQVRG--LPTLFFISPD 157 (182)
Q Consensus 83 ~~~~~l~--~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~i~~--~Pt~~~~~~~ 157 (182)
++++.++ ..++|+++|+|||+||++|+.+.|.+.+..+.......|+.+|++.++ ...++|++.+ +||+++++.+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 4454443 234899999999999999999999999987765444556677777654 4567899986 9999999977
Q ss_pred CCee--eeeecCCCCHHHHHHHHHh
Q 041160 158 PNKD--AIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 158 g~~~--~~~~~g~~~~~~l~~~l~~ 180 (182)
|+.. .....|....+.+.+.|+.
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~ 111 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQ 111 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHH
Confidence 7642 2345566666655555443
No 63
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.72 E-value=1.3e-16 Score=120.57 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=83.9
Q ss_pred CceeeecCHHHHHHHHHc-CCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEE
Q 041160 73 DYLVKKKTAQEIQELVRG-ERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTL 151 (182)
Q Consensus 73 ~~~v~~~~~~~~~~~l~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~ 151 (182)
-..+..++.++|...+.+ .++++|||.||++||++|+.+.|.|++++.+|+ .+.|++||++.. ..+|++.++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 346888899999977654 345789999999999999999999999999997 699999999853 689999999999
Q ss_pred EEEcCCCCeeeeeecC-------CCCHHHHHHHHHh
Q 041160 152 FFISPDPNKDAIRTEG-------LIPIQMMRDIIDN 180 (182)
Q Consensus 152 ~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~ 180 (182)
++|++| ..+.++.| ..+.++|..+|.+
T Consensus 157 liyk~G--~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 157 LVYRNG--DIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEECC--EEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999876 34555555 3567788777765
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.72 E-value=4e-17 Score=137.78 Aligned_cols=106 Identities=25% Similarity=0.515 Sum_probs=92.5
Q ss_pred CceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCccc
Q 041160 73 DYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEYEFARDMQVRGLP 149 (182)
Q Consensus 73 ~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~i~~~P 149 (182)
...+..+++.+|.+.+.+. ++.++|+|||+||++|+.+.|.++++++.+.+ ++.++.+|++.+. +.. ++|.++|
T Consensus 345 ~~~v~~l~~~~f~~~v~~~-~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P 421 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDE-TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP 421 (462)
T ss_pred CCccEEeeCcCHHHHhccC-CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence 4567889999999988654 78999999999999999999999999999987 6899999999875 333 9999999
Q ss_pred EEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 150 TLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 150 t~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
|+++|++|++.....+.|..+.+.|.+||+++
T Consensus 422 t~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 422 TIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred EEEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 99999887643456788999999999999875
No 65
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.71 E-value=5.3e-17 Score=117.25 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=61.1
Q ss_pred HcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC--------CcEEEEEECCCcH-----------------------
Q 041160 89 RGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES--------SAMIVKVDTDDEY----------------------- 137 (182)
Q Consensus 89 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~~----------------------- 137 (182)
.+.+||+++|+|||+||++|+.++|.++++++++.+ ++.++.|+.|++.
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~ 100 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF 100 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH
Confidence 345699999999999999999999999999886643 4888899877532
Q ss_pred --HHHHhcCCCcccEEEEEcCCCCee
Q 041160 138 --EFARDMQVRGLPTLFFISPDPNKD 161 (182)
Q Consensus 138 --~~~~~~~i~~~Pt~~~~~~~g~~~ 161 (182)
.+.++|++.++|++++++.+|+..
T Consensus 101 ~~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 101 RRELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCcEE
Confidence 467789999999999999998643
No 66
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=136.05 Aligned_cols=104 Identities=22% Similarity=0.363 Sum_probs=82.7
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEE-------------------
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKV------------------- 131 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v------------------- 131 (182)
+++.+..+++.... + .+||++||+|||+||++|+.++|.+++++++++. ++.++.|
T Consensus 39 P~f~l~D~dG~~v~--l--skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~ 114 (521)
T PRK14018 39 STLKTADNRPASVY--L--KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA 114 (521)
T ss_pred CCeEeecCCCceee--c--cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHH
Confidence 34445555554433 2 2589999999999999999999999999999873 4665554
Q ss_pred ---------ECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 132 ---------DTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 132 ---------d~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
++|.+.++.+.|+|.++||+++++++|+ ++.++.|..+.++|.++|+.
T Consensus 115 ~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGk-IV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 115 GLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGD-VQRIVKGSISEAQALALIRN 171 (521)
T ss_pred hCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCe-EEEEEeCCCCHHHHHHHHHH
Confidence 3455677899999999999999988874 67788999999999999983
No 67
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.71 E-value=1e-16 Score=120.59 Aligned_cols=87 Identities=22% Similarity=0.409 Sum_probs=72.3
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-----------------------HHHHhcCCCcc
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-----------------------EFARDMQVRGL 148 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----------------------~~~~~~~i~~~ 148 (182)
+||+++|+||++||++|+.++|.+++++++ ++.++.|+.++++ .+...|++.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 489999999999999999999999998753 5778888865432 24557899999
Q ss_pred cEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 149 PTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 149 Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
|++++++++|+ +..++.|..+.+++.+.|+.++
T Consensus 144 P~t~vid~~G~-i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 144 PETFLIDGNGI-IRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CeEEEECCCce-EEEEEecCCCHHHHHHHHHHHH
Confidence 99999998885 6778889999999988887653
No 68
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.70 E-value=1.1e-16 Score=113.13 Aligned_cols=82 Identities=22% Similarity=0.408 Sum_probs=67.8
Q ss_pred cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEEC-----------------------CCcHHHHHhcCCC
Q 041160 90 GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDT-----------------------DDEYEFARDMQVR 146 (182)
Q Consensus 90 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~~~~~~i~ 146 (182)
+.+|++++|+||++||++|+.+.|.+++++++++ +.++.|+. |.+..+++.|++.
T Consensus 22 ~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 22 DLKGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 3458999999999999999999999999998863 66666663 4556788889999
Q ss_pred cccEEEEEcCCCCeeeeeecCCCCHHHH
Q 041160 147 GLPTLFFISPDPNKDAIRTEGLIPIQMM 174 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~~~~~~~g~~~~~~l 174 (182)
++|++++++++|+ ++.++.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~-v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGI-IRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCce-EEEEEeccCChHhc
Confidence 9999999998875 67788898887654
No 69
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.70 E-value=1.8e-16 Score=137.43 Aligned_cols=102 Identities=19% Similarity=0.451 Sum_probs=86.8
Q ss_pred cCHHHHHHHHHc--CCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCccc
Q 041160 79 KTAQEIQELVRG--ERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDD----EYEFARDMQVRGLP 149 (182)
Q Consensus 79 ~~~~~~~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~i~~~P 149 (182)
-+.+++++.+++ .+||+++|+|||+||++|+.+.+.+ .++.++++ ++.++++|+++ +.++.++|++.++|
T Consensus 458 ~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 458 KTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 367888888754 3489999999999999999999876 77888886 68899999985 36889999999999
Q ss_pred EEEEEcCCCCee-eeeecCCCCHHHHHHHHHhh
Q 041160 150 TLFFISPDPNKD-AIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 150 t~~~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~ 181 (182)
|+++|+++|++. ..++.|..+.+++.++|++.
T Consensus 537 t~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 537 TILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999777643 46888999999999999875
No 70
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.69 E-value=4.3e-16 Score=123.55 Aligned_cols=93 Identities=19% Similarity=0.334 Sum_probs=76.7
Q ss_pred HHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC-----------cHHHHHhcCCCcccEEEEE
Q 041160 86 ELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD-----------EYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 86 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~~~~~~i~~~Pt~~~~ 154 (182)
..+.+..++++||+||++||++|+.+.|.+++++++|+ +.++.|++|. +..+.++|||.++|+++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv 236 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLA 236 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEE
Confidence 34556668999999999999999999999999999985 6666666664 3578999999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
+++|+.......|..+.++|.+.|..
T Consensus 237 ~~~~~~v~~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 237 DPDPNQFTPIGFGVMSADELVDRILL 262 (271)
T ss_pred ECCCCEEEEEEeCCCCHHHHHHHHHH
Confidence 98544444556688999999988864
No 71
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.68 E-value=7.4e-16 Score=114.19 Aligned_cols=107 Identities=19% Similarity=0.429 Sum_probs=86.4
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCC-cEEEEEECCC---------------
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESS-AMIVKVDTDD--------------- 135 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~--------------- 135 (182)
+++.+..++++.+. +.+.++++++|+||++||++|+...+.+.++++++++. +.++.|++|.
T Consensus 42 p~~~~~~~~g~~~~--l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~ 119 (173)
T PRK03147 42 PNFVLTDLEGKKIE--LKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLT 119 (173)
T ss_pred CCcEeecCCCCEEe--HHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 34455556665543 33345889999999999999999999999999999763 8888888764
Q ss_pred -------cHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 136 -------EYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 136 -------~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+.++.+.|++.++|++++++++|+ ....+.|..+.+++.++|+++
T Consensus 120 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~-i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 120 FPVAIDKGRQVIDAYGVGPLPTTFLIDKDGK-VVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ceEEECCcchHHHHcCCCCcCeEEEECCCCc-EEEEEeCCCCHHHHHHHHHHh
Confidence 457789999999999999998885 456678989999999998864
No 72
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.68 E-value=4e-16 Score=104.71 Aligned_cols=67 Identities=28% Similarity=0.676 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhc--CCcEEEEEECCCcH-------------------------HHHHhcCC
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYE--SSAMIVKVDTDDEY-------------------------EFARDMQV 145 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~-------------------------~~~~~~~i 145 (182)
||+++|+|||+||++|+++.|.+.++.++++ +++.++.|+.|++. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 67999999988642 57888999
Q ss_pred CcccEEEEEcCCCC
Q 041160 146 RGLPTLFFISPDPN 159 (182)
Q Consensus 146 ~~~Pt~~~~~~~g~ 159 (182)
.++|++++++++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999999875
No 73
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.68 E-value=2.5e-16 Score=117.27 Aligned_cols=87 Identities=23% Similarity=0.416 Sum_probs=72.0
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC-----------------------CcHHHHHhcCCCcc
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD-----------------------DEYEFARDMQVRGL 148 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------------------~~~~~~~~~~i~~~ 148 (182)
++|+++|+||++||++|+.+.|.+++++++ ++.++.|+.+ .+..+.+.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 488999999999999999999999998754 4666666643 33456778899999
Q ss_pred cEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 149 PTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 149 Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
|++++++++|+ ...++.|..+.+++.++|++++
T Consensus 139 P~~~~id~~G~-i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNGV-ILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCce-EEEEEeccCCHHHHHHHHHHHh
Confidence 99999998875 6778889999999999998764
No 74
>PTZ00062 glutaredoxin; Provisional
Probab=99.67 E-value=8.4e-16 Score=116.70 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=76.7
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
.+.+++.+.+.+.. ..+|++|||+||++|+.+.|.+++++++|+ ++.|+.||.| |+|.++||+++|++|
T Consensus 4 ~~~ee~~~~i~~~~-g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g- 72 (204)
T PTZ00062 4 IKKEEKDKLIESNT-GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNS- 72 (204)
T ss_pred CCHHHHHHHHhcCC-CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECC-
Confidence 37788888887532 458999999999999999999999999997 6999999987 999999999999866
Q ss_pred CeeeeeecCCCCHHHHHHHHHhh
Q 041160 159 NKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 159 ~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+.+.++.|. +...+...++++
T Consensus 73 -~~i~r~~G~-~~~~~~~~~~~~ 93 (204)
T PTZ00062 73 -QLINSLEGC-NTSTLVSFIRGW 93 (204)
T ss_pred -EEEeeeeCC-CHHHHHHHHHHH
Confidence 467788884 677888777654
No 75
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.67 E-value=1.3e-16 Score=124.98 Aligned_cols=85 Identities=22% Similarity=0.405 Sum_probs=77.7
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCC
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLI 169 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~ 169 (182)
+..++|+|||+||++|+++.|.++++..++++ -+.+.++|++.-+.++.+|+|+|+||+.+++++ .++.|.|.+
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd---~a~dYRG~R 119 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD---HAIDYRGGR 119 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC---eeeecCCCc
Confidence 56789999999999999999999999988875 388999999999999999999999999999876 688999999
Q ss_pred CHHHHHHHHHh
Q 041160 170 PIQMMRDIIDN 180 (182)
Q Consensus 170 ~~~~l~~~l~~ 180 (182)
+++.|++|-.+
T Consensus 120 ~Kd~iieFAhR 130 (468)
T KOG4277|consen 120 EKDAIIEFAHR 130 (468)
T ss_pred cHHHHHHHHHh
Confidence 99999998654
No 76
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.67 E-value=2.3e-16 Score=108.90 Aligned_cols=87 Identities=24% Similarity=0.441 Sum_probs=66.4
Q ss_pred CCCCcEEEEEEcCCChhHHHhHHHHHHH---HHHhcCCcEEEEEECCCc--------------------HHHHHhcCCCc
Q 041160 91 ERNVPIIIDFYATWCGPCILMAQEIELL---AVEYESSAMIVKVDTDDE--------------------YEFARDMQVRG 147 (182)
Q Consensus 91 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l---~~~~~~~v~~~~vd~d~~--------------------~~~~~~~~i~~ 147 (182)
.++++++++||++||++|+++.+.+.+. ...+.+++.++.++++.. .++.++|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 3489999999999999999999999864 444444688888888754 35899999999
Q ss_pred ccEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 148 LPTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 148 ~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+||+++++++|+ .+.++.|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~-~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGK-IVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSC-EEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCC-EEEEecCCCCHHHHHhhC
Confidence 999999998775 456789999999998875
No 77
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.66 E-value=7.3e-16 Score=109.78 Aligned_cols=71 Identities=24% Similarity=0.469 Sum_probs=60.1
Q ss_pred cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcH-------------------------HHHH
Q 041160 90 GERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEY-------------------------EFAR 141 (182)
Q Consensus 90 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~-------------------------~~~~ 141 (182)
+.+||+++|+||++||++|+.++|.++++++++++ ++.++.|++|+.. .+.+
T Consensus 14 ~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (132)
T cd02964 14 ALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEK 93 (132)
T ss_pred HhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHH
Confidence 44589999999999999999999999999998875 4778888877542 4566
Q ss_pred hcCCCcccEEEEEcCCCCe
Q 041160 142 DMQVRGLPTLFFISPDPNK 160 (182)
Q Consensus 142 ~~~i~~~Pt~~~~~~~g~~ 160 (182)
.|+|.++|++++++++|+.
T Consensus 94 ~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 94 QFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HcCCCCCCEEEEECCCCCE
Confidence 7999999999999988753
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=1e-15 Score=117.77 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=74.0
Q ss_pred CCCCcEEEEEEc---CCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeec
Q 041160 91 ERNVPIIIDFYA---TWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTE 166 (182)
Q Consensus 91 ~~~k~vvv~F~a---~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~ 166 (182)
.++...++.|++ +||++|+.+.|.++++++++++ .+.++.+|.|++++++++|+|.++||+++|++| +....++.
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g-~~~~~~~~ 95 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG-KDGGIRYT 95 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC-eeeEEEEe
Confidence 334456777888 9999999999999999999963 245667777799999999999999999999865 33335889
Q ss_pred CCCCHHHHHHHHHhh
Q 041160 167 GLIPIQMMRDIIDNE 181 (182)
Q Consensus 167 g~~~~~~l~~~l~~~ 181 (182)
|..+.+++.++|+.+
T Consensus 96 G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 96 GIPAGYEFAALIEDI 110 (215)
T ss_pred ecCCHHHHHHHHHHH
Confidence 999999999998865
No 79
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.66 E-value=6.9e-16 Score=109.58 Aligned_cols=71 Identities=21% Similarity=0.455 Sum_probs=60.3
Q ss_pred cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCc------------------------HHHHHh
Q 041160 90 GERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDE------------------------YEFARD 142 (182)
Q Consensus 90 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~------------------------~~~~~~ 142 (182)
+.+||+++|+||++||++|+.++|.++++++++.+ ++.++.|+.|.. ..++++
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT 94 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence 34589999999999999999999999999988863 477887877754 356789
Q ss_pred cCCCcccEEEEEcCCCCe
Q 041160 143 MQVRGLPTLFFISPDPNK 160 (182)
Q Consensus 143 ~~i~~~Pt~~~~~~~g~~ 160 (182)
|+|.++|++++++++|++
T Consensus 95 ~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 95 FKIEGIPTLIILDADGEV 112 (131)
T ss_pred cCCCCCCEEEEECCCCCE
Confidence 999999999999988864
No 80
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.66 E-value=2e-15 Score=106.35 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=71.8
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCCcHHHHH--------hcCCCcc
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDDEYEFAR--------DMQVRGL 148 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~--------~~~i~~~ 148 (182)
+++.+.....+ +|+++|+|+|+||++|+.|.+.. .++++.+..++.++.+|.++.+++.+ .|++.++
T Consensus 4 ~~eal~~Ak~~--~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 4 GEEAFEKARRE--DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CHHHHHHHHHc--CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 44556655544 88999999999999999998843 47777766578999999999887755 3589999
Q ss_pred cEEEEEcCCCCeeeeeecCC-----CCHHHHHHHHHh
Q 041160 149 PTLFFISPDPNKDAIRTEGL-----IPIQMMRDIIDN 180 (182)
Q Consensus 149 Pt~~~~~~~g~~~~~~~~g~-----~~~~~l~~~l~~ 180 (182)
|++++++++|+. +....+. .+...+.+++++
T Consensus 82 Pt~vfl~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 82 PLNVFLTPDLKP-FFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred CEEEEECCCCCE-EeeeeecCCCCcCCCcCHHHHHHH
Confidence 999999999864 4433332 233355555543
No 81
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.65 E-value=3.7e-15 Score=115.61 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=84.9
Q ss_pred cccCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-------c----H
Q 041160 70 VREDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-------E----Y 137 (182)
Q Consensus 70 ~~~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~----~ 137 (182)
..+++.+..++++.+. +.+.+||++||+||++||++|+.++|.|++++++|++ ++.++.|+++. . .
T Consensus 78 ~aPdF~l~d~~G~~vs--Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~ 155 (236)
T PLN02399 78 SVHDFTVKDIDGKDVA--LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 155 (236)
T ss_pred CCCceEEECCCCCEEe--HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHH
Confidence 4577788877776554 4445689999999999999999999999999999986 48899998741 1 1
Q ss_pred HHH-HhcC----------------------------------CCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 138 EFA-RDMQ----------------------------------VRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 138 ~~~-~~~~----------------------------------i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
+++ ++++ +...|+.++++++|+ ++.++.|..+.++|.+.|+++|
T Consensus 156 ~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk-Vv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 156 QFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK-VVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCc-EEEEECCCCCHHHHHHHHHHHh
Confidence 222 2222 123589999999986 5778899999999999998875
No 82
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.63 E-value=8e-16 Score=120.50 Aligned_cols=100 Identities=21% Similarity=0.416 Sum_probs=86.7
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc-----CCcEEEEEECCCcHHHHHhcCCCcccEEEEE
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYE-----SSAMIVKVDTDDEYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 154 (182)
+.++++.++.. ...++|.|||+||+.++.++|.+++.+..++ +++.+..||||.+..++.+|.|..|||+.+|
T Consensus 2 t~~N~~~il~s--~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 2 TSENIDSILDS--NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred ccccHHHhhcc--ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 45677777766 6689999999999999999999998887664 4699999999999999999999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
.+| ......|.|.++.+.|.++|++.+
T Consensus 80 rnG-~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 80 RNG-EMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred ecc-chhhhhhccchhHHHHHHHHHHHh
Confidence 876 334447899999999999998764
No 83
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.63 E-value=2.2e-15 Score=105.64 Aligned_cols=98 Identities=18% Similarity=0.350 Sum_probs=73.4
Q ss_pred ceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEE---------------------
Q 041160 74 YLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVD--------------------- 132 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd--------------------- 132 (182)
+.+..++++.+.... .++++++|+||++||++|+.+.|.+.++++++. +..+.+|
T Consensus 3 f~l~~~~g~~~~~~~--~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd03011 3 FTATTLDGEQFDLES--LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVI 78 (123)
T ss_pred ceeecCCCCEeeHHH--hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEE
Confidence 344445554444332 347899999999999999999999999987742 2222222
Q ss_pred CCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHH
Q 041160 133 TDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDI 177 (182)
Q Consensus 133 ~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~ 177 (182)
.|.+.+++++|+|.++|++++++++| ....+.|..+.+.|.+.
T Consensus 79 ~d~~~~~~~~~~i~~~P~~~vid~~g--i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 79 NDPDGVISARWGVSVTPAIVIVDPGG--IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred ECCCcHHHHhCCCCcccEEEEEcCCC--eEEEEeccCCHHHHHhh
Confidence 13456799999999999999999886 67788999999988764
No 84
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.61 E-value=2.7e-15 Score=103.81 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC--------------------cHHHHHhcCCCcccEEE
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD--------------------EYEFARDMQVRGLPTLF 152 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--------------------~~~~~~~~~i~~~Pt~~ 152 (182)
+|+++|+||++||++|+.+.|.++++++++.+++.++.+.-+. +.++.++|++.++|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 8899999999999999999999999999887667666663111 23567788889999999
Q ss_pred EEcCCCC
Q 041160 153 FISPDPN 159 (182)
Q Consensus 153 ~~~~~g~ 159 (182)
+++++|+
T Consensus 101 vid~~G~ 107 (114)
T cd02967 101 LLDEAGV 107 (114)
T ss_pred EECCCCe
Confidence 9998874
No 85
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.61 E-value=4.1e-15 Score=113.11 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=78.5
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-----------cHHH
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-----------EYEF 139 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-----------~~~~ 139 (182)
+++.+..++++.+. +.+.+||++||+|||+||++|+.++|.+++++++|.+ ++.++.|++++ ..++
T Consensus 20 pdf~l~d~~G~~vs--L~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f 97 (199)
T PTZ00056 20 YDYTVKTLEGTTVP--MSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKF 97 (199)
T ss_pred CceEEECCCCCEEe--HHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHH
Confidence 44455555554333 3345699999999999999999999999999999986 48899998742 1233
Q ss_pred HHhcCC------------------------------------Cccc---EEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 140 ARDMQV------------------------------------RGLP---TLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 140 ~~~~~i------------------------------------~~~P---t~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
++++++ .++| +.++++++|+ ++.++.|..+.+.+.+.|++
T Consensus 98 ~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~-iv~~~~g~~~~~~l~~~I~~ 176 (199)
T PTZ00056 98 NDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGN-VVAYFSPRTEPLELEKKIAE 176 (199)
T ss_pred HHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCc-EEEEeCCCCCHHHHHHHHHH
Confidence 444432 1222 6889999986 45778888888888888887
Q ss_pred hC
Q 041160 181 EM 182 (182)
Q Consensus 181 ~l 182 (182)
+|
T Consensus 177 ll 178 (199)
T PTZ00056 177 LL 178 (199)
T ss_pred HH
Confidence 63
No 86
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.61 E-value=6.8e-15 Score=109.41 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=69.4
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc-------------HHHHHhcCC--CcccEEEEEcCCCCee
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE-------------YEFARDMQV--RGLPTLFFISPDPNKD 161 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------------~~~~~~~~i--~~~Pt~~~~~~~g~~~ 161 (182)
+|+||++||++|++++|.+++++++++ +.++.|++|+. ..+.+.|++ .++|+.++++++|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999984 67776766533 236678995 6999999999998754
Q ss_pred eeeecCCCCHHHHHHHHHhhC
Q 041160 162 AIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 162 ~~~~~g~~~~~~l~~~l~~~l 182 (182)
...+.|..+.+++.+.|++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 456889999999999888764
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.61 E-value=1.1e-14 Score=111.99 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=72.4
Q ss_pred cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCC
Q 041160 90 GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLI 169 (182)
Q Consensus 90 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~ 169 (182)
+.++...|+.||++||++|+.+.+.+++++.+++ ++.+..+|.+++++++++|+|.++||+++++++ + ++.|..
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~--~---~~~G~~ 203 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGV--E---EFVGAY 203 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC--E---EEECCC
Confidence 3434455666999999999999999999998864 798999999999999999999999999998643 2 277888
Q ss_pred CHHHHHHHHHh
Q 041160 170 PIQMMRDIIDN 180 (182)
Q Consensus 170 ~~~~l~~~l~~ 180 (182)
+.+++.++|++
T Consensus 204 ~~~~l~~~l~~ 214 (215)
T TIGR02187 204 PEEQFLEYILS 214 (215)
T ss_pred CHHHHHHHHHh
Confidence 99999999875
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.60 E-value=5.1e-15 Score=135.96 Aligned_cols=90 Identities=21% Similarity=0.425 Sum_probs=76.6
Q ss_pred CCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCC-cEEEEEEC---------------------------CCcHHHHHh
Q 041160 91 ERNVPIIIDFYATWCGPCILMAQEIELLAVEYESS-AMIVKVDT---------------------------DDEYEFARD 142 (182)
Q Consensus 91 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~---------------------------d~~~~~~~~ 142 (182)
.+||++||+|||+||++|+.++|.|++++++|+++ +.++.|.. |.+.++.++
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 46999999999999999999999999999999864 77777742 224467789
Q ss_pred cCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 143 MQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 143 ~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
|+|.++|++++++++|+ ++.+..|....+.+.++|++.
T Consensus 498 ~~V~~iPt~ilid~~G~-iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGK-LIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred cCCCccceEEEECCCCe-EEEEEecccCHHHHHHHHHHH
Confidence 99999999999998885 566788988999999998865
No 89
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.4e-15 Score=122.84 Aligned_cols=98 Identities=24% Similarity=0.514 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCe
Q 041160 81 AQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNK 160 (182)
Q Consensus 81 ~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~ 160 (182)
...+...+... +++++|+||++||++|+++.|.+.++++.+++.+.+..|||+++.++|++|+|.++||+.+|.++ .
T Consensus 36 ~~~~~~~~~~~-~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~--~ 112 (383)
T KOG0191|consen 36 LDSFFDFLLKD-DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG--K 112 (383)
T ss_pred ccccHHHhhcc-CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC--C
Confidence 34444443333 67899999999999999999999999999998899999999999999999999999999999987 4
Q ss_pred eeeeecCCCCHHHHHHHHHhh
Q 041160 161 DAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 161 ~~~~~~g~~~~~~l~~~l~~~ 181 (182)
..+.+.|..+.+.+.+++.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKE 133 (383)
T ss_pred ceeeccCcccHHHHHHHHHHh
Confidence 577888888999999988754
No 90
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.59 E-value=1.1e-14 Score=105.24 Aligned_cols=95 Identities=25% Similarity=0.525 Sum_probs=73.0
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcC-CChhHHHhHHHHHHHHHHhcCC-cEEEEEECCC---------------------
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYAT-WCGPCILMAQEIELLAVEYESS-AMIVKVDTDD--------------------- 135 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~--------------------- 135 (182)
.++..+. +.+.+||+++|+||++ ||++|+..+|.++++++.|+++ +.++.|..+.
T Consensus 16 ~~g~~~~--l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~ 93 (146)
T PF08534_consen 16 LDGKPVS--LSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDP 93 (146)
T ss_dssp TTSEEEE--GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEET
T ss_pred CCCCEec--HHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEech
Confidence 4444333 3345699999999999 9999999999999999997764 8888887654
Q ss_pred cHHHHHhcCCC---------cccEEEEEcCCCCeeeeeecCCCC--HHHHHH
Q 041160 136 EYEFARDMQVR---------GLPTLFFISPDPNKDAIRTEGLIP--IQMMRD 176 (182)
Q Consensus 136 ~~~~~~~~~i~---------~~Pt~~~~~~~g~~~~~~~~g~~~--~~~l~~ 176 (182)
...+.+.|++. ++|++++++++|+ +++...|..+ ..++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~-V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 94 DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGK-VVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSB-EEEEEESSBTTSHHSHHH
T ss_pred HHHHHHHhCCccccccccCCeecEEEEEECCCE-EEEEEeCCCCCCCCChhh
Confidence 34688889988 9999999999985 5666677655 334443
No 91
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.58 E-value=1.2e-14 Score=93.99 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=58.9
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCC-CCHHHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGL-IPIQMMR 175 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~-~~~~~l~ 175 (182)
.|+||++||++|+.+.|.+++++++++.++.++.+| +.+.+.+|++.++||+++ +| + .. +.|. .+.+++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-~-~~--~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DG-E-LV--IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-E-EE--EEeccCCHHHHH
Confidence 378999999999999999999999998778887777 344578899999999998 33 2 33 5664 4557887
Q ss_pred HHHH
Q 041160 176 DIID 179 (182)
Q Consensus 176 ~~l~ 179 (182)
++|+
T Consensus 73 ~~l~ 76 (76)
T TIGR00412 73 EILK 76 (76)
T ss_pred HHhC
Confidence 7763
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.58 E-value=1.2e-14 Score=99.28 Aligned_cols=76 Identities=38% Similarity=0.704 Sum_probs=65.9
Q ss_pred CCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc-CCcEEEEEECCCc-----------------------HHHHHhcCCC
Q 041160 91 ERNVPIIIDFYATWCGPCILMAQEIELLAVEYE-SSAMIVKVDTDDE-----------------------YEFARDMQVR 146 (182)
Q Consensus 91 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-----------------------~~~~~~~~i~ 146 (182)
.++++++|+||++||++|+...+.+.++.++++ .++.++.|++|.+ ..+.+.|++.
T Consensus 17 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 17 LKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred cCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 348899999999999999999999999999996 3699999999986 7889999999
Q ss_pred cccEEEEEcCCCCeeeeeecC
Q 041160 147 GLPTLFFISPDPNKDAIRTEG 167 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~~~~~~~g 167 (182)
++|++++++++|+ .+.++.|
T Consensus 97 ~~P~~~l~d~~g~-v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGR-IRARHVG 116 (116)
T ss_pred ccceEEEECCCCc-EEEEecC
Confidence 9999999998875 4555443
No 93
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.57 E-value=2.5e-14 Score=101.02 Aligned_cols=76 Identities=21% Similarity=0.397 Sum_probs=62.7
Q ss_pred CCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECC---------------------------CcHHHHHh
Q 041160 91 ERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTD---------------------------DEYEFARD 142 (182)
Q Consensus 91 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d---------------------------~~~~~~~~ 142 (182)
.+||+++|+||++||++|+.++|.++++++++++ ++.++.|+.+ .+..+.+.
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 4589999999999999999999999999999985 4788887642 12356778
Q ss_pred cCCCcccEEEEEcCCCCeeeeeecC
Q 041160 143 MQVRGLPTLFFISPDPNKDAIRTEG 167 (182)
Q Consensus 143 ~~i~~~Pt~~~~~~~g~~~~~~~~g 167 (182)
|++.++|++++++++|+ .+..+.|
T Consensus 101 ~~v~~~P~~~vid~~G~-v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGN-VRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCc-EEEEEec
Confidence 99999999999998885 4556655
No 94
>PLN02412 probable glutathione peroxidase
Probab=99.56 E-value=4.8e-14 Score=104.44 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=80.1
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC--------cHHH---
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD--------EYEF--- 139 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~--------~~~~--- 139 (182)
+++.+..++++.+. +.+.+||++||+||++||++|+.++|.+++++++|++ ++.++.|+++. ..++
T Consensus 10 pdf~l~d~~G~~v~--l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~ 87 (167)
T PLN02412 10 YDFTVKDIGGNDVS--LNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQT 87 (167)
T ss_pred CceEEECCCCCEEe--HHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHH
Confidence 44555555554333 3344689999999999999999999999999999986 48899998742 1111
Q ss_pred -HHhcC----------------------------------CCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 140 -ARDMQ----------------------------------VRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 140 -~~~~~----------------------------------i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
.++++ +...|+.++++++|+ ++.++.|..+.+++.+.|+++|
T Consensus 88 ~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~-vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 88 VCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGK-VVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCc-EEEEECCCCCHHHHHHHHHHHH
Confidence 12211 334589999999986 5678889999999999988764
No 95
>PHA02125 thioredoxin-like protein
Probab=99.55 E-value=6.6e-14 Score=90.22 Aligned_cols=71 Identities=27% Similarity=0.485 Sum_probs=56.3
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCC-CCHHHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGL-IPIQMMR 175 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~-~~~~~l~ 175 (182)
+++||++||++|+.+.|.|+++. +.++.||.+++.+++++|+|.++||++ .+ +...++.|. .+..+|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g--~~~~~~~G~~~~~~~l~ 70 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT--STLDRFTGVPRNVAELK 70 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CC--EEEEEEeCCCCcHHHHH
Confidence 78999999999999999997652 468899999999999999999999987 22 244566774 3346666
Q ss_pred HHH
Q 041160 176 DII 178 (182)
Q Consensus 176 ~~l 178 (182)
+.|
T Consensus 71 ~~~ 73 (75)
T PHA02125 71 EKL 73 (75)
T ss_pred HHh
Confidence 544
No 96
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.55 E-value=4.9e-14 Score=106.41 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=72.6
Q ss_pred ccCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC----------------
Q 041160 71 REDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD---------------- 134 (182)
Q Consensus 71 ~~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d---------------- 134 (182)
.+++.++..+++++.-.-...+||+++|+||++||++|+++.|.+.++.+++..++ +.|+.+
T Consensus 52 aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~v--v~Is~~~~~~~~~~~~~~~~~~ 129 (189)
T TIGR02661 52 APIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDV--VMISDGTPAEHRRFLKDHELGG 129 (189)
T ss_pred CCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcE--EEEeCCCHHHHHHHHHhcCCCc
Confidence 45566666666544311122358999999999999999999999999987754334 444322
Q ss_pred ----CcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCC-CCHHHHHHHHHh
Q 041160 135 ----DEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGL-IPIQMMRDIIDN 180 (182)
Q Consensus 135 ----~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~ 180 (182)
...++.+.|++.++|+.++++++|+. ..+ |. ...+.+.+.++.
T Consensus 130 ~~~~~~~~i~~~y~v~~~P~~~lID~~G~I-~~~--g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 130 ERYVVSAEIGMAFQVGKIPYGVLLDQDGKI-RAK--GLTNTREHLESLLEA 177 (189)
T ss_pred ceeechhHHHHhccCCccceEEEECCCCeE-EEc--cCCCCHHHHHHHHHH
Confidence 13467788999999999999988853 332 33 356677777654
No 97
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.54 E-value=4.9e-14 Score=102.84 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=72.9
Q ss_pred HcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECC--------Cc---HHHHHh-cCC----------
Q 041160 89 RGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTD--------DE---YEFARD-MQV---------- 145 (182)
Q Consensus 89 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d--------~~---~~~~~~-~~i---------- 145 (182)
.+.+||++||+|||+||++|+..+|.+++++++|++ ++.++.|+++ .. .+.+++ +++
T Consensus 18 ~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~ 97 (153)
T TIGR02540 18 EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKI 97 (153)
T ss_pred HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEec
Confidence 345699999999999999999999999999999986 5889999862 11 223322 221
Q ss_pred ----------------CcccE----EEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 146 ----------------RGLPT----LFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 146 ----------------~~~Pt----~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
.++|+ .++++++|+ .+.++.|..+.+.|.+.|+++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~-v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 98 LGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQ-VVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCc-EEEEECCCCCHHHHHHHHHHhC
Confidence 14787 899999986 5778899999999999998875
No 98
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.7e-15 Score=124.17 Aligned_cols=108 Identities=25% Similarity=0.503 Sum_probs=85.2
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECC--CcHHHHHhcCCC
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTD--DEYEFARDMQVR 146 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d--~~~~~~~~~~i~ 146 (182)
++..|..++.++|+..+.+.+ +..+|.||++|||+|+.+.|.+++++++..+ -+.++.|||. +|..+|++|+|.
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~-~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSR-KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCeEEeehhhhHHHhcccc-hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 445689999999999998764 5689999999999999999999999998764 3779999996 467899999999
Q ss_pred cccEEEEEcCCCCe--eeeeecCCCCHHHHHHHHHh
Q 041160 147 GLPTLFFISPDPNK--DAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~--~~~~~~g~~~~~~l~~~l~~ 180 (182)
++|++.+|..+-.. ....+.|.....++.+.+.+
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~ 151 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIR 151 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHH
Confidence 99999999887211 11233444455666666544
No 99
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.3e-14 Score=115.77 Aligned_cols=137 Identities=23% Similarity=0.377 Sum_probs=108.8
Q ss_pred cccccCCCCccccccccccCCCCCCCCCCCCCccccCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHH
Q 041160 37 SLFSFSATNTKDGLFSLSTHPRKFLCKPPQGKYVREDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIE 116 (182)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~ 116 (182)
....+.|....+.++++............... .+..++..+|...+... +..++|.||++||++|+.+.|.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~l~~~~~~~~~~~~-~~~~lv~f~aPwc~~ck~l~~~~~ 185 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIKELEPSVKKLVEG------EVFELTKDNFDETVKDS-DADWLVEFYAPWCGHCKKLAPEWE 185 (383)
T ss_pred ceeeccCcccHHHHHHHHHHhhccccccccCC------ceEEccccchhhhhhcc-CcceEEEEeccccHHhhhcChHHH
Confidence 35666666666666666554433222222111 47788889999877765 567999999999999999999999
Q ss_pred HHHHHhc--CCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 117 LLAVEYE--SSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 117 ~l~~~~~--~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+++..+. ..+.+..+|++.+..++.+++|.++||+.+|.++.. ....+.|.++.+.+.+|+++.
T Consensus 186 ~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 186 KLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred HHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc-ccccccccccHHHHHHHHHhh
Confidence 9999886 469999999999999999999999999999998864 467788999999999999864
No 100
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.50 E-value=7.5e-14 Score=101.75 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=66.2
Q ss_pred HcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-----------cHHHHHh-cC-----------
Q 041160 89 RGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-----------EYEFARD-MQ----------- 144 (182)
Q Consensus 89 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-----------~~~~~~~-~~----------- 144 (182)
.+.+||+++|+|||+||+ |+.++|.++++++++.+ ++.++.|+++. ..+++++ ++
T Consensus 18 ~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~ 96 (152)
T cd00340 18 SKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDV 96 (152)
T ss_pred HHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEec
Confidence 345689999999999999 99999999999999975 58899987642 1133332 22
Q ss_pred ------------CCccc-----------EEEEEcCCCCeeeeeecCCCCHHHHHHH
Q 041160 145 ------------VRGLP-----------TLFFISPDPNKDAIRTEGLIPIQMMRDI 177 (182)
Q Consensus 145 ------------i~~~P-----------t~~~~~~~g~~~~~~~~g~~~~~~l~~~ 177 (182)
+.++| +.++++++|+ ++.++.|..+.+.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~-i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 97 NGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGE-VVKRFAPTTDPEELEKD 151 (152)
T ss_pred cCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCc-EEEEECCCCCHHHHHhc
Confidence 13456 7899999986 57788998888877653
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.49 E-value=2e-13 Score=101.99 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=65.7
Q ss_pred cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEE------EEEECCC----------------------------
Q 041160 90 GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMI------VKVDTDD---------------------------- 135 (182)
Q Consensus 90 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~------~~vd~d~---------------------------- 135 (182)
+.+||+.+|+|||+||++|+.++|.++++.++ ++.+ +.||.|+
T Consensus 56 ~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 56 ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred HcCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 34599999999999999999999999999653 2333 5566554
Q ss_pred -cHHHHHhcCCCcccEE-EEEcCCCCeeeeeecCCCCHHHHHHH
Q 041160 136 -EYEFARDMQVRGLPTL-FFISPDPNKDAIRTEGLIPIQMMRDI 177 (182)
Q Consensus 136 -~~~~~~~~~i~~~Pt~-~~~~~~g~~~~~~~~g~~~~~~l~~~ 177 (182)
+..+...|++.++|+. ++++++|+ +..++.|..+.+++.+.
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk~Gk-Vv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDKTGK-VKFVKEGALSDSDIQTV 175 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECCCCc-EEEEEeCCCCHHHHHHH
Confidence 2345668999999888 89999986 57788998887776553
No 102
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.48 E-value=1.6e-13 Score=86.23 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=52.2
Q ss_pred EEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 96 IIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
-++.||++||++|+.+.+.++++++.++ ++.+..+|+++++++.+++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 4788999999999999999999988754 69999999999999999999999999855
No 103
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.48 E-value=9e-13 Score=91.53 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=75.7
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECC--CcHHHHHhcCCCcccEEEEEcC-CCCeeeeee
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTD--DEYEFARDMQVRGLPTLFFISP-DPNKDAIRT 165 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d--~~~~~~~~~~i~~~Pt~~~~~~-~g~~~~~~~ 165 (182)
++|+++|+|+++||++|+.+...+ .++.+.+..+..++.+|.+ +..++++.|++.++|++++++. +|+ .+.+.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~-~l~~~ 94 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGE-VLKVW 94 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCc-EeEEE
Confidence 489999999999999999998754 6677777667888888887 4567899999999999999998 664 67789
Q ss_pred cCCCCHHHHHHHHHhh
Q 041160 166 EGLIPIQMMRDIIDNE 181 (182)
Q Consensus 166 ~g~~~~~~l~~~l~~~ 181 (182)
.|..+.+++.+.|++.
T Consensus 95 ~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 95 SGNITPEDLLSQLIEF 110 (114)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999988764
No 104
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.48 E-value=3.2e-13 Score=114.65 Aligned_cols=100 Identities=18% Similarity=0.480 Sum_probs=84.3
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCCc----HHHHHhcCCCcccEEE
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDDE----YEFARDMQVRGLPTLF 152 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~i~~~Pt~~ 152 (182)
+..++++.+.+.++|+|++||||+||-.||.+++.. .+.+.+.. ++....+|.+++ .++.++||+-++|+++
T Consensus 461 ~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ 539 (569)
T COG4232 461 PLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYL 539 (569)
T ss_pred CHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEE
Confidence 455999999998889999999999999999999976 34444444 699999999864 4789999999999999
Q ss_pred EEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 153 FISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 153 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+|+.+|+.... ..|..+.+.+.+++++.
T Consensus 540 ff~~~g~e~~~-l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 540 FFGPQGSEPEI-LTGFLTADAFLEHLERA 567 (569)
T ss_pred EECCCCCcCcC-CcceecHHHHHHHHHHh
Confidence 99977765444 89999999999999864
No 105
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.47 E-value=8.5e-13 Score=87.77 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=66.3
Q ss_pred HHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeec
Q 041160 87 LVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTE 166 (182)
Q Consensus 87 ~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~ 166 (182)
.+.+-++.+-+..|+++||++|+...+.++++++.++ ++.+..+|.++.++++++|+|.++|++++ +| + ... .
T Consensus 6 ~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG-~-~~~--~ 78 (89)
T cd03026 6 QIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NG-E-LFG--F 78 (89)
T ss_pred HHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CC-E-EEE--e
Confidence 3444546667889999999999999999999999886 69999999999999999999999999964 33 2 333 4
Q ss_pred CCCCHHHHH
Q 041160 167 GLIPIQMMR 175 (182)
Q Consensus 167 g~~~~~~l~ 175 (182)
|..+.+++.
T Consensus 79 G~~~~~e~~ 87 (89)
T cd03026 79 GRMTLEEIL 87 (89)
T ss_pred CCCCHHHHh
Confidence 766666654
No 106
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.44 E-value=6.7e-13 Score=99.68 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=75.9
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcE-EEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-------c-H---H
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPI-IIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-------E-Y---E 138 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~-~---~ 138 (182)
+++.+..++++.+. +.+.+||++ ++.+||+||++|+.++|.+++++++|++ ++.++.|+++. + . +
T Consensus 21 p~f~l~d~~G~~vs--Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~ 98 (183)
T PTZ00256 21 FEFEAIDIDGQLVQ--LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKE 98 (183)
T ss_pred cceEeEcCCCCEEe--HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHH
Confidence 34445555554433 344568865 4566999999999999999999999986 48899998641 0 1 1
Q ss_pred H-HHh------------------------------------cCCCcccE---EEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 139 F-ARD------------------------------------MQVRGLPT---LFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 139 ~-~~~------------------------------------~~i~~~Pt---~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
. .++ +++.++|+ .++++++|+ ++.++.|..+.+.+.+.|
T Consensus 99 f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~-Iv~~~~g~~~~~~l~~~I 177 (183)
T PTZ00256 99 YVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGK-VVKYFSPKVNPNEMIQDI 177 (183)
T ss_pred HHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCC-EEEEECCCCCHHHHHHHH
Confidence 1 111 13447794 589999986 567788988988898888
Q ss_pred HhhC
Q 041160 179 DNEM 182 (182)
Q Consensus 179 ~~~l 182 (182)
+++|
T Consensus 178 ~~ll 181 (183)
T PTZ00256 178 EKLL 181 (183)
T ss_pred HHHh
Confidence 8764
No 107
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.44 E-value=1.2e-12 Score=97.12 Aligned_cols=89 Identities=19% Similarity=0.365 Sum_probs=70.4
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-----------------------------cHHHHH
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-----------------------------EYEFAR 141 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-----------------------------~~~~~~ 141 (182)
+++++||+||++||+.|+.+.+.+.++++++++ ++.++.|+.|. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 478999999999999999999999999999974 68899998763 224577
Q ss_pred hcCCCcccEEEEEcCCCCeeeeee---------cCCCCHHHHHHHHHhh
Q 041160 142 DMQVRGLPTLFFISPDPNKDAIRT---------EGLIPIQMMRDIIDNE 181 (182)
Q Consensus 142 ~~~i~~~Pt~~~~~~~g~~~~~~~---------~g~~~~~~l~~~l~~~ 181 (182)
.|++..+|++++++++|+. ++.. .+..+.+.+.+.|+.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKL-VYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCeE-EEeecccCCcccccccccHHHHHHHHHHH
Confidence 8999999999999988864 3321 1224567788887765
No 108
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.43 E-value=2.4e-12 Score=95.33 Aligned_cols=107 Identities=8% Similarity=0.169 Sum_probs=76.5
Q ss_pred ccccCceeeecCHHHHHHHHHcCCCCcEEEEEEcCC-ChhHHHhHHHHHHHHHHhcCCcEEEEEECCC------------
Q 041160 69 YVREDYLVKKKTAQEIQELVRGERNVPIIIDFYATW-CGPCILMAQEIELLAVEYESSAMIVKVDTDD------------ 135 (182)
Q Consensus 69 ~~~~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~------------ 135 (182)
...+++.+...++..+. +.+.+||++||+||++| |++|+.++|.++++++++. ++.++.|+.|.
T Consensus 22 ~~~P~f~l~~~~g~~v~--l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 22 DKAPDFTLVANDLSDVS--LADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCCCeEEEcCCCcEEe--hHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 33455555555554333 34456899999999999 9999999999999999985 68888888753
Q ss_pred -----------cHHHHHhcCCCccc---------EEEEEcCCCCeeeeeec--C---CCCHHHHHHHHH
Q 041160 136 -----------EYEFARDMQVRGLP---------TLFFISPDPNKDAIRTE--G---LIPIQMMRDIID 179 (182)
Q Consensus 136 -----------~~~~~~~~~i~~~P---------t~~~~~~~g~~~~~~~~--g---~~~~~~l~~~l~ 179 (182)
...+++.||+...| ++++++.+|++ ...+. . ....+++.+.|+
T Consensus 99 ~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I-~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 99 LENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKV-VYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred CCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeE-EEEEECCCcCCCCCHHHHHHHhh
Confidence 23678889988777 99999988864 33332 2 234566666554
No 109
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.40 E-value=1.5e-12 Score=92.00 Aligned_cols=84 Identities=10% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHH--cCCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCC
Q 041160 83 EIQELVR--GERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPD 157 (182)
Q Consensus 83 ~~~~~l~--~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~ 157 (182)
+|++.+. ...+|+++|+|+++||++|+++...+ .++.+....++..+.++.|....-....+ .++||++|++.+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 5666543 33489999999999999999999976 56666554456666777653321111244 689999999999
Q ss_pred CCeeeeeecCC
Q 041160 158 PNKDAIRTEGL 168 (182)
Q Consensus 158 g~~~~~~~~g~ 168 (182)
|+ .+.+..|.
T Consensus 90 g~-vi~~i~Gy 99 (130)
T cd02960 90 LT-VRADITGR 99 (130)
T ss_pred CC-Cccccccc
Confidence 85 34444444
No 110
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.40 E-value=1.9e-12 Score=92.55 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC---------------------cHHHHHhcCCCc
Q 041160 91 ERNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD---------------------EYEFARDMQVRG 147 (182)
Q Consensus 91 ~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~~~~~~i~~ 147 (182)
.+||+++|+|| +.||+.|..+.+.+.++++++.+ ++.++.|..|. +..+.+.||+..
T Consensus 21 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 21 LRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred hCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 34889999999 58999999999999999998865 58888887654 346777889888
Q ss_pred c---------cEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 148 L---------PTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 148 ~---------Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
. |++++++++|+ +...+.|..+.+.+.+.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~-v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGK-IVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccccCCcceeEEEECCCCE-EEEEEecCCccchHHHHh
Confidence 8 99999998875 566778888777777655
No 111
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.36 E-value=1.7e-11 Score=86.62 Aligned_cols=100 Identities=8% Similarity=0.073 Sum_probs=82.1
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEc--CCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYA--TWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a--~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
++..++++.+... ...++.|-. .-++.+-...=.|++++++|++ ++.+++||+|++++++.+|||.++||+++|+
T Consensus 22 ~~~~~~~~~~~~~--~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 22 VSESRLDDWLTQA--PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred cccccHHHHHhCC--CcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 4567777777653 234444433 2388888889999999999984 5999999999999999999999999999999
Q ss_pred CCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
+| +.+.+..|..+.+++.++|++++
T Consensus 100 dG--k~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 100 GG--NYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CC--EEEEEEeCcCCHHHHHHHHHHHh
Confidence 77 46778899999999999999864
No 112
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.35 E-value=6.6e-12 Score=82.15 Aligned_cols=63 Identities=37% Similarity=0.741 Sum_probs=51.6
Q ss_pred CCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcC
Q 041160 93 NVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISP 156 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~ 156 (182)
+|+++|+|+++||++|+.+...+ .++.+.+.+++..+.+|.++........+ .++|+++++++
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 89999999999999999999988 66666566689999999987765443222 67999999974
No 113
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.35 E-value=4.2e-12 Score=88.77 Aligned_cols=87 Identities=24% Similarity=0.588 Sum_probs=68.3
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcC-CChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC--------------
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYAT-WCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-------------- 135 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------- 135 (182)
|++.+...++..+. +++.+||+++|.||++ ||++|+...+.++++.++++. ++.++.|+.|.
T Consensus 6 P~f~l~~~~g~~~~--l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 6 PDFTLTDSDGKTVS--LSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp GCEEEETTTSEEEE--GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred CCcEeECCCCCEEE--HHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 34444444433333 3344589999999999 999999999999999999986 58999998765
Q ss_pred -------cHHHHHhcCCC------cccEEEEEcCCCCe
Q 041160 136 -------EYEFARDMQVR------GLPTLFFISPDPNK 160 (182)
Q Consensus 136 -------~~~~~~~~~i~------~~Pt~~~~~~~g~~ 160 (182)
+.++.+.|++. .+|++++++++|++
T Consensus 84 ~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 84 FPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp SEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBE
T ss_pred cccccCcchHHHHHcCCccccCCceEeEEEEECCCCEE
Confidence 33678889998 99999999999853
No 114
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.34 E-value=9.5e-12 Score=89.45 Aligned_cols=103 Identities=10% Similarity=0.127 Sum_probs=71.0
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcCC-ChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc--------------
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYATW-CGPCILMAQEIELLAVEYESSAMIVKVDTDDE-------------- 136 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------------- 136 (182)
+++.+...+++.+. +.+.+||++||+||++| |++|+..+|.+++++++++ ++.++.|+.|..
T Consensus 7 P~f~l~~~~g~~~~--l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~ 83 (143)
T cd03014 7 PDFTLVTSDLSEVS--LADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDN 83 (143)
T ss_pred CCcEEECCCCcEEe--HHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCC
Confidence 34444444443332 33446899999999999 6999999999999999986 688888887631
Q ss_pred ---------HHHHHhcCCCc------ccEEEEEcCCCCeeeeeecCC--CCHHHHHHHH
Q 041160 137 ---------YEFARDMQVRG------LPTLFFISPDPNKDAIRTEGL--IPIQMMRDII 178 (182)
Q Consensus 137 ---------~~~~~~~~i~~------~Pt~~~~~~~g~~~~~~~~g~--~~~~~l~~~l 178 (182)
..+.+.|++.. .|+.++++++|++ .....|. ....++.+.|
T Consensus 84 ~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I-~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 84 VTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKV-IYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeE-EEEEECCCcccCCCHHHHh
Confidence 35667777753 6899999988864 4444432 3334444443
No 115
>smart00594 UAS UAS domain.
Probab=99.33 E-value=4e-11 Score=84.33 Aligned_cols=88 Identities=10% Similarity=0.151 Sum_probs=72.1
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCC--cHHHHHhcCCCcccEEEEEcCCCC----eee
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDD--EYEFARDMQVRGLPTLFFISPDPN----KDA 162 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~i~~~Pt~~~~~~~g~----~~~ 162 (182)
.+|.++|+|+++||++|+.+...+ .++.+....++.+..+|.+. ..+++++|++.++|++++++..|. ...
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~ 105 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWV 105 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEe
Confidence 388999999999999999998865 66666666577787888764 457899999999999999988762 245
Q ss_pred eeecCCCCHHHHHHHHH
Q 041160 163 IRTEGLIPIQMMRDIID 179 (182)
Q Consensus 163 ~~~~g~~~~~~l~~~l~ 179 (182)
.+..|..+.++++..|+
T Consensus 106 ~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 106 GVVEGEISPEELMTFLE 122 (122)
T ss_pred ccccCCCCHHHHHHhhC
Confidence 67889999999988763
No 116
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.32 E-value=1.9e-11 Score=90.86 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=69.0
Q ss_pred cCCCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCc----------------------------HHH
Q 041160 90 GERNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDE----------------------------YEF 139 (182)
Q Consensus 90 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~~ 139 (182)
+.+||++||+|| ++||++|....+.++++++++.+ ++.++.|+.|.. ..+
T Consensus 26 ~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 26 DYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred HhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 345889999999 89999999999999999999975 588888876542 245
Q ss_pred HHhcCCC------cccEEEEEcCCCCeeeeeecC----CCCHHHHHHHHHhh
Q 041160 140 ARDMQVR------GLPTLFFISPDPNKDAIRTEG----LIPIQMMRDIIDNE 181 (182)
Q Consensus 140 ~~~~~i~------~~Pt~~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~ 181 (182)
.+.|++. ..|++++++++|+. ...+.+ ..+.+++.+.|+++
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I-~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGII-RHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence 5667775 57899999999864 444433 23567788887653
No 117
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.31 E-value=3.1e-11 Score=87.94 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=74.1
Q ss_pred cCceeeecCHHHHHHHHHcCCCCcEEEEEEcC-CChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC--------------
Q 041160 72 EDYLVKKKTAQEIQELVRGERNVPIIIDFYAT-WCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-------------- 135 (182)
Q Consensus 72 ~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------- 135 (182)
+++.+..++++.+. +.+.+||+++|+||++ ||+.|+...+.+.++++++.+ ++.++.|+.|.
T Consensus 11 p~f~l~~~~G~~~~--l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~ 88 (154)
T PRK09437 11 PKFSLPDQDGEQVS--LTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLN 88 (154)
T ss_pred CCcEeeCCCCCEEe--HHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 44445555554333 3345689999999986 688899999999999999875 58888888754
Q ss_pred -------cHHHHHhcCCCcc------------cEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 136 -------EYEFARDMQVRGL------------PTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 136 -------~~~~~~~~~i~~~------------Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
...+.+.|++... |+.++++++|+ ++..+.|....+.+.+.+
T Consensus 89 ~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~-i~~~~~g~~~~~~~~~~~ 149 (154)
T PRK09437 89 FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGK-IEHVFDKFKTSNHHDVVL 149 (154)
T ss_pred CeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCE-EEEEEcCCCcchhHHHHH
Confidence 3356778887654 67889998885 566678766555544433
No 118
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=89.23 Aligned_cols=69 Identities=23% Similarity=0.494 Sum_probs=60.8
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCC---cEEEEEECCCc-------------------------HHHHHhc
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYESS---AMIVKVDTDDE-------------------------YEFARDM 143 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~-------------------------~~~~~~~ 143 (182)
+||.|.++|.|.||+|||.+-|.+.+++++...+ ..++.|+.|.+ .++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4899999999999999999999999999998875 77888887753 2678899
Q ss_pred CCCcccEEEEEcCCCCe
Q 041160 144 QVRGLPTLFFISPDPNK 160 (182)
Q Consensus 144 ~i~~~Pt~~~~~~~g~~ 160 (182)
+|.++|++++++++|..
T Consensus 112 ~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTV 128 (157)
T ss_pred ccCcCceeEEecCCCCE
Confidence 99999999999999854
No 119
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.27 E-value=4.4e-11 Score=90.14 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=68.6
Q ss_pred cCCCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-------------------------cHHHHHh
Q 041160 90 GERNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-------------------------EYEFARD 142 (182)
Q Consensus 90 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------------------~~~~~~~ 142 (182)
+.+||++||+|| ++||++|+.+++.++++++++.+ ++.++.|+.|. +..+++.
T Consensus 28 d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 28 DVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred HHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 345889999999 99999999999999999999864 57788887664 2356778
Q ss_pred cCCC------cccEEEEEcCCCCeeeeeec-C--CCCHHHHHHHHHh
Q 041160 143 MQVR------GLPTLFFISPDPNKDAIRTE-G--LIPIQMMRDIIDN 180 (182)
Q Consensus 143 ~~i~------~~Pt~~~~~~~g~~~~~~~~-g--~~~~~~l~~~l~~ 180 (182)
||+. ..|+.++++.+|+....... . .+..+++.+.|+.
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 8875 46999999988865333221 1 2467777777754
No 120
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=8.2e-11 Score=79.74 Aligned_cols=85 Identities=32% Similarity=0.659 Sum_probs=69.5
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC-CcHHHHHhcC--CCcccEEEEEcCCCCeeeeeecC--
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD-DEYEFARDMQ--VRGLPTLFFISPDPNKDAIRTEG-- 167 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~~~~~~--i~~~Pt~~~~~~~g~~~~~~~~g-- 167 (182)
++++++.||++||++|+.+.|.+.++++++...+.++.+|.. ..+++...|+ +..+|+++++.++.. .....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE--VDRLVGGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch--hhhhhhcc
Confidence 778999999999999999999999999999867899999997 8899999999 999999988776532 333344
Q ss_pred CCCHHHHHHHHH
Q 041160 168 LIPIQMMRDIID 179 (182)
Q Consensus 168 ~~~~~~l~~~l~ 179 (182)
..+...+++...
T Consensus 110 ~~~~~~~~~~~~ 121 (127)
T COG0526 110 VLPKEALIDALG 121 (127)
T ss_pred cCCHHHHHHHhc
Confidence 456666655444
No 121
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.22 E-value=1.5e-10 Score=83.55 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCC-CcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC---------------------c--HHHHHhcC
Q 041160 91 ERN-VPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD---------------------E--YEFARDMQ 144 (182)
Q Consensus 91 ~~~-k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~--~~~~~~~~ 144 (182)
.+| ++++|.|| ++||+.|....|.++++++++.+ ++.++.|+.|. . ..+.+.|+
T Consensus 25 ~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g 104 (149)
T cd03018 25 FRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYG 104 (149)
T ss_pred HcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhC
Confidence 346 78888888 99999999999999999999974 58888887643 3 56777888
Q ss_pred CCc----c--cEEEEEcCCCCeeeeeecCC----CCHHHHHHHHH
Q 041160 145 VRG----L--PTLFFISPDPNKDAIRTEGL----IPIQMMRDIID 179 (182)
Q Consensus 145 i~~----~--Pt~~~~~~~g~~~~~~~~g~----~~~~~l~~~l~ 179 (182)
+.. + |++++++++|+ ....+.|. .+...+.+.|+
T Consensus 105 ~~~~~~~~~~~~~~lid~~G~-v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 105 VFDEDLGVAERAVFVIDRDGI-IRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred CccccCCCccceEEEECCCCE-EEEEEecCCcccccchhHHHHhh
Confidence 873 3 38899998875 45555553 34555555543
No 122
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.20 E-value=3.4e-10 Score=87.03 Aligned_cols=95 Identities=21% Similarity=0.336 Sum_probs=78.5
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC-----------CcHHHHHhcCCCcccE
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD-----------DEYEFARDMQVRGLPT 150 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------~~~~~~~~~~i~~~Pt 150 (182)
..-++.|.+..++.-+++||.+.|+.|+.+.|.+..++++|+ +.++.|++| .+..+++++||..+|+
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pa 186 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPA 186 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCE
Confidence 334445655557788999999999999999999999999995 777777776 3578999999999999
Q ss_pred EEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 151 LFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 151 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+++++.++.....-..|..+.++|.+.|
T Consensus 187 l~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 187 LFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 9999998755555667999999998764
No 123
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.18 E-value=1.9e-10 Score=82.80 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=55.1
Q ss_pred CCcEEEE-EEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC---------------------cHHHHHhcCCC---
Q 041160 93 NVPIIID-FYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD---------------------EYEFARDMQVR--- 146 (182)
Q Consensus 93 ~k~vvv~-F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~~~~~~i~--- 146 (182)
+++++|. ||++||++|+..+|.+.++++++.+ ++.++.|+.+. +..+.+.|++.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~ 102 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSL 102 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecC
Confidence 3445555 5699999999999999999999964 58888888654 34567778873
Q ss_pred --------------------------cccEEEEEcCCCCeeeeeecC
Q 041160 147 --------------------------GLPTLFFISPDPNKDAIRTEG 167 (182)
Q Consensus 147 --------------------------~~Pt~~~~~~~g~~~~~~~~g 167 (182)
..|+.++++++|+ +.+.+.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~-i~~~~~~ 148 (149)
T cd02970 103 PWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGT-ILFAHVD 148 (149)
T ss_pred cHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCe-EEEEecC
Confidence 6899999988764 4444433
No 124
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.16 E-value=6e-10 Score=84.97 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=68.8
Q ss_pred CCCCcEEE-EEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC---------------------------cHHHHH
Q 041160 91 ERNVPIII-DFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD---------------------------EYEFAR 141 (182)
Q Consensus 91 ~~~k~vvv-~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~~~ 141 (182)
.+||.++| .||++||+.|..+++.|.++++++.+ ++.++.|++|. +.++++
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 35776665 68999999999999999999999975 47788887663 235677
Q ss_pred hcCCC------cccEEEEEcCCCCeeeee---ecCCCCHHHHHHHHHhh
Q 041160 142 DMQVR------GLPTLFFISPDPNKDAIR---TEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 142 ~~~i~------~~Pt~~~~~~~g~~~~~~---~~g~~~~~~l~~~l~~~ 181 (182)
.||+. .+|++++++++|++.... ..+.++.+++.+.|+.+
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 78874 589999999998643222 13447888988888764
No 125
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.15 E-value=6.7e-10 Score=83.66 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=70.3
Q ss_pred cCCCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC-------------------------cHHHHHh
Q 041160 90 GERNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD-------------------------EYEFARD 142 (182)
Q Consensus 90 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------------------------~~~~~~~ 142 (182)
+.+||++||.|| ++||+.|..+++.|.++++++.+ ++.++.|+.|. +..+++.
T Consensus 28 d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 28 DTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 345889999999 99999999999999999999964 57788887654 3467888
Q ss_pred cCC----Ccc--cEEEEEcCCCCeeeeee---cCCCCHHHHHHHHHh
Q 041160 143 MQV----RGL--PTLFFISPDPNKDAIRT---EGLIPIQMMRDIIDN 180 (182)
Q Consensus 143 ~~i----~~~--Pt~~~~~~~g~~~~~~~---~g~~~~~~l~~~l~~ 180 (182)
||+ .++ |+.++++++|++..... ...++.+++.+.|+.
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 998 356 99999999986533221 223578888888764
No 126
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.13 E-value=2.2e-10 Score=82.04 Aligned_cols=61 Identities=13% Similarity=0.323 Sum_probs=45.3
Q ss_pred CceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChh-HHHhHHHHHHHHHHhcC----CcEEEEEECCC
Q 041160 73 DYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGP-CILMAQEIELLAVEYES----SAMIVKVDTDD 135 (182)
Q Consensus 73 ~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d~ 135 (182)
++.+...++..+. +.+.++|+++|.||++||++ |....+.++++++++.+ ++.++.|+.|.
T Consensus 4 ~f~l~~~~g~~~~--l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 4 DFTLTDQDGRPVT--LSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred ceEEEcCCCCEEc--hHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3344444444332 22335889999999999998 99999999999999975 38888888753
No 127
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.13 E-value=2.4e-10 Score=85.72 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECC
Q 041160 88 VRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTD 134 (182)
Q Consensus 88 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 134 (182)
+.+.+||++||.|||+||++|+ ..|.|++++++|++ ++.++.+.|+
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 4456699999999999999997 69999999999976 5889999885
No 128
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.13 E-value=4.1e-10 Score=80.33 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=61.4
Q ss_pred CCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC----------------------cHHHHHhcCCCc
Q 041160 92 RNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD----------------------EYEFARDMQVRG 147 (182)
Q Consensus 92 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------~~~~~~~~~i~~ 147 (182)
++++++|+|| +.||+.|+...|.+.++++++.. ++.++.|..|. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5889999999 78999999999999999999853 58888887653 335677788776
Q ss_pred cc---------EEEEEcCCCCeeeeeecCCCC
Q 041160 148 LP---------TLFFISPDPNKDAIRTEGLIP 170 (182)
Q Consensus 148 ~P---------t~~~~~~~g~~~~~~~~g~~~ 170 (182)
.| ++++++++|+ +...+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~-i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGK-IRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCc-EEEEEecCCC
Confidence 65 8899998875 4566666543
No 129
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.06 E-value=2e-09 Score=82.85 Aligned_cols=91 Identities=9% Similarity=0.084 Sum_probs=68.3
Q ss_pred CCCCcE-EEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCc---------------------------HHHHH
Q 041160 91 ERNVPI-IIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDE---------------------------YEFAR 141 (182)
Q Consensus 91 ~~~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~---------------------------~~~~~ 141 (182)
.+|+++ ++.||++||+.|..+++.+.++++++.. ++.++.|++|.. .++++
T Consensus 26 ~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~ 105 (215)
T PRK13599 26 YAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN 105 (215)
T ss_pred HCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence 347665 6789999999999999999999999964 588888887752 25677
Q ss_pred hcCCC-------cccEEEEEcCCCCeeeeee---cCCCCHHHHHHHHHhh
Q 041160 142 DMQVR-------GLPTLFFISPDPNKDAIRT---EGLIPIQMMRDIIDNE 181 (182)
Q Consensus 142 ~~~i~-------~~Pt~~~~~~~g~~~~~~~---~g~~~~~~l~~~l~~~ 181 (182)
.||+. .+|++++++++|++....+ ...+..+++.+.|+.+
T Consensus 106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 78873 6899999999886543322 2235677888777653
No 130
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.06 E-value=1.1e-09 Score=77.69 Aligned_cols=89 Identities=20% Similarity=0.372 Sum_probs=55.0
Q ss_pred HHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhc---CCCcccEEEEEcCCCCeeee
Q 041160 87 LVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDM---QVRGLPTLFFISPDPNKDAI 163 (182)
Q Consensus 87 ~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~---~i~~~Pt~~~~~~~g~~~~~ 163 (182)
.++...++.-++.|..+|||.|+...|.+.++++..+ ++.+-.+..|++.++.++| |..++|++++++++|+ ...
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~-~lg 112 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK-ELG 112 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT---EEE
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC-EeE
Confidence 4444446678999999999999999999999999976 6777777888888887765 5789999999998864 343
Q ss_pred eecCCCCHHHHHHHHH
Q 041160 164 RTEGLIPIQMMRDIID 179 (182)
Q Consensus 164 ~~~g~~~~~~l~~~l~ 179 (182)
++ |.++ +.+.++++
T Consensus 113 ~w-gerP-~~~~~~~~ 126 (129)
T PF14595_consen 113 RW-GERP-KEVQELVD 126 (129)
T ss_dssp EE-ESS--HHHH----
T ss_pred EE-cCCC-HHHhhccc
Confidence 43 4444 44444443
No 131
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=6.5e-09 Score=71.78 Aligned_cols=100 Identities=21% Similarity=0.314 Sum_probs=83.4
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPN 159 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~ 159 (182)
+..++++.+.+...+.+||.|.-+|-+.|.++...|.++++...+-..++-+|+|+.+++.+.|++...|++++|-++..
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 66788888887779999999999999999999999999999999778899999999999999999999999999987643
Q ss_pred eeeeeecCC--------CCHHHHHHHHH
Q 041160 160 KDAIRTEGL--------IPIQMMRDIID 179 (182)
Q Consensus 160 ~~~~~~~g~--------~~~~~l~~~l~ 179 (182)
..+-...|. .+++++++.|+
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHH
Confidence 333222222 35677777765
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.04 E-value=1.6e-09 Score=65.41 Aligned_cols=60 Identities=27% Similarity=0.559 Sum_probs=52.1
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHH---hcCCCcccEEEEEcCC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFAR---DMQVRGLPTLFFISPD 157 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~---~~~i~~~Pt~~~~~~~ 157 (182)
++.||++||++|+.+.+.+.++ +....++.+..+|++...+... .+++..+|++++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999999 4445579999999998887655 8999999999999865
No 133
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.03 E-value=2.7e-09 Score=78.01 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=55.3
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCCcHHHHHhc--------CCCcc
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDDEYEFARDM--------QVRGL 148 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~--------~i~~~ 148 (182)
+.+.+...-.+ +|+++|.++++||+.|+.|.... .++++.+..+..-++||.++.+++...| |..|.
T Consensus 26 ~~ea~~~Ak~e--~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 26 GEEALEKAKKE--NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp SHHHHHHHHHH--T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred CHHHHHHHHhc--CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 44556655444 88999999999999999998744 6677776656888999999999998888 78899
Q ss_pred cEEEEEcCCCCe
Q 041160 149 PTLFFISPDPNK 160 (182)
Q Consensus 149 Pt~~~~~~~g~~ 160 (182)
|+.+++.++|+.
T Consensus 104 Pl~vfltPdg~p 115 (163)
T PF03190_consen 104 PLTVFLTPDGKP 115 (163)
T ss_dssp SEEEEE-TTS-E
T ss_pred CceEEECCCCCe
Confidence 999999999853
No 134
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.03 E-value=2.2e-09 Score=67.80 Aligned_cols=69 Identities=13% Similarity=0.374 Sum_probs=53.4
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE----FARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQ 172 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~ 172 (182)
+..|+++||++|++..+.+++. ++.+..+|++++++ +.+.+++.++|++++. |+ . ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~---~~-~---~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG---HK-I---IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC---CE-E---Eee-CCHH
Confidence 5679999999999998888652 57888899987654 5667999999999873 22 2 455 4778
Q ss_pred HHHHHHH
Q 041160 173 MMRDIID 179 (182)
Q Consensus 173 ~l~~~l~ 179 (182)
.|.++|+
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 8888874
No 135
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.2e-09 Score=75.07 Aligned_cols=87 Identities=15% Similarity=0.296 Sum_probs=74.0
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCC----------------cHHHHHhcCCCcccEEE
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDD----------------EYEFARDMQVRGLPTLF 152 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----------------~~~~~~~~~i~~~Pt~~ 152 (182)
.+|..+++|-+..|++|-++...+ +++++-+.+++.++.+++.. .++++++|+++++||++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 488999999999999999998877 66777777778888888642 34899999999999999
Q ss_pred EEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 153 FISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 153 ~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
+++..|+ .+....|.++.+++...++
T Consensus 121 Ffdk~Gk-~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 121 FFDKTGK-TILELPGYMPPEQFLAVLK 146 (182)
T ss_pred EEcCCCC-EEEecCCCCCHHHHHHHHH
Confidence 9999886 5778899999999887765
No 136
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.02 E-value=5.7e-11 Score=90.31 Aligned_cols=100 Identities=21% Similarity=0.363 Sum_probs=88.5
Q ss_pred ceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCcccEEE
Q 041160 74 YLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVRGLPTLF 152 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~ 152 (182)
..++.++++++.+++... .++.|+|+||+.|+...|.++.++.--.+ .|.+.+||+..++-+.-+|-+.+.||+.
T Consensus 24 s~~~~~~eenw~~~l~ge----wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLTGE----WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred ceeEEecccchhhhhchH----HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEE
Confidence 378899999999998653 79999999999999999999999865544 5889999999999999999999999999
Q ss_pred EEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 153 FISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 153 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
-...| +.-+|.|.++.++++.|++.
T Consensus 100 HvkDG---eFrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 100 HVKDG---EFRRYSGARDKNDFISFEEH 124 (248)
T ss_pred Eeecc---ccccccCcccchhHHHHHHh
Confidence 88765 56689999999999999863
No 137
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.02 E-value=3e-09 Score=68.08 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=50.4
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHh-----cCCCcccEEEEEcCCCCeeeeeecCCCCH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARD-----MQVRGLPTLFFISPDPNKDAIRTEGLIPI 171 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~-----~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~ 171 (182)
++.||++||++|+++.+.++++. +.+-.+|+++++...+. +++.++|++ ++++| . .. ...+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g-~-~l----~~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG-S-FL----TNPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC-e-Ee----cCCCH
Confidence 67899999999999999887653 45567888887766555 389999997 46543 2 22 23566
Q ss_pred HHHHHHHH
Q 041160 172 QMMRDIID 179 (182)
Q Consensus 172 ~~l~~~l~ 179 (182)
.++.+.|+
T Consensus 69 ~~~~~~l~ 76 (77)
T TIGR02200 69 AQVKAKLQ 76 (77)
T ss_pred HHHHHHhh
Confidence 67777665
No 138
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.01 E-value=6.1e-09 Score=81.72 Aligned_cols=93 Identities=20% Similarity=0.285 Sum_probs=77.0
Q ss_pred HHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc-----------HHHHHhcCCCcccEEEEE
Q 041160 86 ELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE-----------YEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 86 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~~~~~~i~~~Pt~~~~ 154 (182)
+.+....++.-+++||.+.|++|..+.|.++.++++|+ +.++.|++|.. ...++++||..+|+++++
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv 220 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLV 220 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEE
Confidence 34555446678999999999999999999999999996 77777777754 568999999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
+.++++..--..|..+.++|.+.|..
T Consensus 221 ~~~t~~~~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 221 NPKSQKMSPLAYGFISQDELKERILN 246 (256)
T ss_pred ECCCCcEEEEeeccCCHHHHHHHHHH
Confidence 99866555556799999999888754
No 139
>PRK15000 peroxidase; Provisional
Probab=99.01 E-value=5e-09 Score=79.76 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCcEEEEEEc-CCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCc----------------------------HHHHH
Q 041160 92 RNVPIIIDFYA-TWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDE----------------------------YEFAR 141 (182)
Q Consensus 92 ~~k~vvv~F~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~~~~ 141 (182)
+||++||.||+ +||+.|..+++.|.++++++.. ++.++.|++|.. .++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 58899999999 5999999999999999999975 588888887632 24566
Q ss_pred hcCCC------cccEEEEEcCCCCeeeeeecC----CCCHHHHHHHHHh
Q 041160 142 DMQVR------GLPTLFFISPDPNKDAIRTEG----LIPIQMMRDIIDN 180 (182)
Q Consensus 142 ~~~i~------~~Pt~~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~ 180 (182)
.||+. ++|+.++++++|++. ..+.+ .++.+++.+.|+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHH
Confidence 78876 699999999988643 33333 2567777777764
No 140
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.97 E-value=9.7e-09 Score=80.95 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=67.7
Q ss_pred CCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC----------------------------cHHHHH
Q 041160 92 RNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD----------------------------EYEFAR 141 (182)
Q Consensus 92 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~~~~ 141 (182)
+++++|+.|| ++||+.|..+++.|.++++++.+ ++.++.|++|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4777888887 89999999999999999999975 47788887764 235677
Q ss_pred hcCCC-----cccEEEEEcCCCCeeeeee---cCCCCHHHHHHHHHh
Q 041160 142 DMQVR-----GLPTLFFISPDPNKDAIRT---EGLIPIQMMRDIIDN 180 (182)
Q Consensus 142 ~~~i~-----~~Pt~~~~~~~g~~~~~~~---~g~~~~~~l~~~l~~ 180 (182)
.||+. ..|+.++++++|++..... ...++.+++.+.|+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 88885 5899999998886533321 233577888777753
No 141
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.96 E-value=8.6e-09 Score=79.31 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=66.7
Q ss_pred CCCcEEE-EEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCc---------------------------HHHHHh
Q 041160 92 RNVPIII-DFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDE---------------------------YEFARD 142 (182)
Q Consensus 92 ~~k~vvv-~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~---------------------------~~~~~~ 142 (182)
+||+++| .||++||+.|..+++.|+++++++.. ++.++.|++|.. .++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4776665 78999999999999999999999964 588888887642 355667
Q ss_pred cCCC-------cccEEEEEcCCCCeeeeee---cCCCCHHHHHHHHHhh
Q 041160 143 MQVR-------GLPTLFFISPDPNKDAIRT---EGLIPIQMMRDIIDNE 181 (182)
Q Consensus 143 ~~i~-------~~Pt~~~~~~~g~~~~~~~---~g~~~~~~l~~~l~~~ 181 (182)
||+. ..|+.++++++|++..... .-.+..+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7863 4799999999986533222 1235788888877643
No 142
>PRK13189 peroxiredoxin; Provisional
Probab=98.96 E-value=9.8e-09 Score=79.39 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=66.7
Q ss_pred CCCcE-EEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC---------------------------cHHHHHh
Q 041160 92 RNVPI-IIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD---------------------------EYEFARD 142 (182)
Q Consensus 92 ~~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~~~~ 142 (182)
+||.+ |+.||++||+.|..+.+.|.++++++.+ ++.++.|++|. +.++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 47755 4577899999999999999999999974 47888887764 2356777
Q ss_pred cCCC-------cccEEEEEcCCCCeeeeee---cCCCCHHHHHHHHHhh
Q 041160 143 MQVR-------GLPTLFFISPDPNKDAIRT---EGLIPIQMMRDIIDNE 181 (182)
Q Consensus 143 ~~i~-------~~Pt~~~~~~~g~~~~~~~---~g~~~~~~l~~~l~~~ 181 (182)
||+. .+|++++++++|++..... ...+..+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8865 5799999999986533222 2345678888887653
No 143
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.94 E-value=9.5e-09 Score=71.56 Aligned_cols=78 Identities=24% Similarity=0.488 Sum_probs=56.0
Q ss_pred CHHHHHHHHHc--CCCCcEEEEEEc-------CCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-------HHHH--
Q 041160 80 TAQEIQELVRG--ERNVPIIIDFYA-------TWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-------EFAR-- 141 (182)
Q Consensus 80 ~~~~~~~~l~~--~~~k~vvv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~-- 141 (182)
.-++|.+.+.. .++++++|.|++ +|||.|+...|.+++.....+++..++.+.+...+ .+..
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 44677777765 457899999986 59999999999999999887777888888874322 3333
Q ss_pred hcCCCcccEEEEEcCC
Q 041160 142 DMQVRGLPTLFFISPD 157 (182)
Q Consensus 142 ~~~i~~~Pt~~~~~~~ 157 (182)
++++.++||++-+..+
T Consensus 84 ~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETG 99 (119)
T ss_dssp CC---SSSEEEECTSS
T ss_pred eeeeeecceEEEECCC
Confidence 5999999999999765
No 144
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-09 Score=81.09 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=74.3
Q ss_pred eeeec-CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCC------
Q 041160 75 LVKKK-TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVR------ 146 (182)
Q Consensus 75 ~v~~~-~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~------ 146 (182)
.++.. +.+.+++.+...+.+.++|.|+|.|.+.|++..|.+.++..+|.. ...|.+||+..-++.+++|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 35555 777788888888889999999999999999999999999999986 4899999999999999999985
Q ss_pred cccEEEEEcCCC
Q 041160 147 GLPTLFFISPDP 158 (182)
Q Consensus 147 ~~Pt~~~~~~~g 158 (182)
..||+++|.+|.
T Consensus 205 QLPT~ilFq~gk 216 (265)
T KOG0914|consen 205 QLPTYILFQKGK 216 (265)
T ss_pred cCCeEEEEccch
Confidence 699999998763
No 145
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.93 E-value=1.3e-08 Score=77.67 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=64.7
Q ss_pred Cc-EEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC---------------------------cHHHHHhcC
Q 041160 94 VP-IIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD---------------------------EYEFARDMQ 144 (182)
Q Consensus 94 k~-vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~~~~~~ 144 (182)
++ +++.||++||+.|..+++.+.++++++.+ ++.++.|++|. +..+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 45689999999999999999999999975 58888888764 235677888
Q ss_pred CC----c----ccEEEEEcCCCCeeeeeecC----CCCHHHHHHHHHhh
Q 041160 145 VR----G----LPTLFFISPDPNKDAIRTEG----LIPIQMMRDIIDNE 181 (182)
Q Consensus 145 i~----~----~Pt~~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~ 181 (182)
+. + +|+.++++++|++. ....+ .++.+++.+.|+.+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~-~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIR-LILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHHH
Confidence 75 2 45789999888643 33322 35678888887653
No 146
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.91 E-value=1e-08 Score=77.93 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=67.0
Q ss_pred HcCCCCcEEEEEEc-CCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCCc----------------------------HH
Q 041160 89 RGERNVPIIIDFYA-TWCGPCILMAQEIELLAVEYES-SAMIVKVDTDDE----------------------------YE 138 (182)
Q Consensus 89 ~~~~~k~vvv~F~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------------~~ 138 (182)
.+.+||+++|.||+ +||+.|..+.+.+.++++++.. ++.++.|++|.. .+
T Consensus 32 ~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 32 SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 34458899999995 8899999999999999999975 588888887632 35
Q ss_pred HHHhcCCC------cccEEEEEcCCCCeeeeeec---CCCCHHHHHHHHHh
Q 041160 139 FARDMQVR------GLPTLFFISPDPNKDAIRTE---GLIPIQMMRDIIDN 180 (182)
Q Consensus 139 ~~~~~~i~------~~Pt~~~~~~~g~~~~~~~~---g~~~~~~l~~~l~~ 180 (182)
+++.||+. .+|+.++++++|+....... ..+..+++.+.|+.
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 67778875 47999999998864332211 22455666666643
No 147
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.89 E-value=3.2e-08 Score=77.32 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=74.5
Q ss_pred HHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC-----------cHHHHHhcCCCcccEEEEE
Q 041160 86 ELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD-----------EYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 86 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~~~~~~i~~~Pt~~~~ 154 (182)
+.+.+..++.-+++||.+.|++|..+.|.++.++++|+ +.++.|++|. +...++++||..+|+++++
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 34444445678999999999999999999999999996 6666666653 3346789999999999999
Q ss_pred cCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 155 SPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 155 ~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
+.+++...--..|..+.++|.+.|..
T Consensus 214 ~~~t~~~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 214 DPKSGSVRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred ECCCCcEEEEeeccCCHHHHHHHHHH
Confidence 99875555556799999999887754
No 148
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.80 E-value=8.9e-08 Score=66.68 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=68.4
Q ss_pred CCCCcEEEEEEcC----CChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc--HHHHHhcCCCcccEEEEEcC--CCCeee
Q 041160 91 ERNVPIIIDFYAT----WCGPCILMAQEIELLAVEYESSAMIVKVDTDDE--YEFARDMQVRGLPTLFFISP--DPNKDA 162 (182)
Q Consensus 91 ~~~k~vvv~F~a~----wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~i~~~Pt~~~~~~--~g~~~~ 162 (182)
..+|.++|+++++ ||..|+..... +++.+-...+..+...|++.. .+++..+++.++|+++++.. +....+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 3489999999999 99999765421 333333444688888888754 57899999999999999932 222457
Q ss_pred eeecCCCCHHHHHHHHHhh
Q 041160 163 IRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 163 ~~~~g~~~~~~l~~~l~~~ 181 (182)
.+..|..+.+++...|+..
T Consensus 94 ~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 7899999999999988764
No 149
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.80 E-value=1.7e-07 Score=69.68 Aligned_cols=128 Identities=18% Similarity=0.237 Sum_probs=99.2
Q ss_pred cccccCCC-CccccccccccCCCCCCCCCCCCCccccCceeeecCHHHHHHHHHcCCCCc-EEEEEEcCCChhHHHhHHH
Q 041160 37 SLFSFSAT-NTKDGLFSLSTHPRKFLCKPPQGKYVREDYLVKKKTAQEIQELVRGERNVP-IIIDFYATWCGPCILMAQE 114 (182)
Q Consensus 37 ~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~k~-vvv~F~a~wC~~C~~~~p~ 114 (182)
....|.|. -..+.+..|...- .-..+..+|.+++..+... +++ +++.|..............
T Consensus 53 ~~~~y~~~~~~~~~l~~fI~~~--------------~~P~v~~~t~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 116 (184)
T PF13848_consen 53 KPVVYDGDKFTPEELKKFIKKN--------------SFPLVPELTPENFEKLFSS--PKPPVLILFDNKDNESTEAFKKE 116 (184)
T ss_dssp SEEEESSSTTSHHHHHHHHHHH--------------SSTSCEEESTTHHHHHHST--SSEEEEEEEETTTHHHHHHHHHH
T ss_pred CceecccccCCHHHHHHHHHHh--------------ccccccccchhhHHHHhcC--CCceEEEEEEcCCchhHHHHHHH
Confidence 44556664 4555666665422 1224778899999988765 544 7888887788899999999
Q ss_pred HHHHHHHhcCCcEEEEEECCCcHHHHHhcCCC--cccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 115 IELLAVEYESSAMIVKVDTDDEYEFARDMQVR--GLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 115 l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~--~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
++++++++++++.|+.+|++..+.+++.+|+. .+|++++++..+....+...+..+.+.|.+||++
T Consensus 117 l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 117 LQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999999989999999999999999999998 8999999995544433334788999999999975
No 150
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.79 E-value=2.2e-07 Score=64.98 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=75.8
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEc-CCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS-PDP 158 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~-~~g 158 (182)
++.++++++.+..+|.++|.|..+|-+.|.++...|.++++..++-..++.+|+++.+++.+.|.+. .|..++|- ++.
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 6778888888777999999999999999999999999999999977889999999999999999998 77755443 442
Q ss_pred Ce-------eeeeecCC-CCHHHHHHHHH
Q 041160 159 NK-------DAIRTEGL-IPIQMMRDIID 179 (182)
Q Consensus 159 ~~-------~~~~~~g~-~~~~~l~~~l~ 179 (182)
.. ...+..+. .+++++++.++
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie 114 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIE 114 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHH
Confidence 11 11223333 34788888776
No 151
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.79 E-value=9.8e-08 Score=61.40 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=54.7
Q ss_pred EEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecC-CCCHHHHHHHH
Q 041160 100 FYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEG-LIPIQMMRDII 178 (182)
Q Consensus 100 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g-~~~~~~l~~~l 178 (182)
+++++|+.|..+...+++++.+++ +.+-.+|....+++ .+|||.++|++ +++ | ..++.| ..+.++|.++|
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPal-vIn-g----~~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPAL-VIN-G----KVVFVGRVPSKEELKELL 75 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEE-EET-T----EEEEESS--HHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEE-EEC-C----EEEEEecCCCHHHHHHHh
Confidence 368889999999999999999984 66667777666666 99999999999 554 3 235678 77889999988
Q ss_pred H
Q 041160 179 D 179 (182)
Q Consensus 179 ~ 179 (182)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 5
No 152
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.78 E-value=2e-08 Score=65.30 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=43.5
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhcCCCcccEEE
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-----EFARDMQVRGLPTLF 152 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~~i~~~Pt~~ 152 (182)
|+.|+++||++|+++.+.++++. .++.+.++.+|.+++. .+.+.+++..+|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 57899999999999999999987 3334778888877554 366778999999983
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4.2e-08 Score=67.29 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=63.2
Q ss_pred CHHHHHHHHHcC-CCCcEEEEEEc--------CCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC-------cHHHHHhc
Q 041160 80 TAQEIQELVRGE-RNVPIIIDFYA--------TWCGPCILMAQEIELLAVEYESSAMIVKVDTDD-------EYEFARDM 143 (182)
Q Consensus 80 ~~~~~~~~l~~~-~~k~vvv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~~~~~ 143 (182)
-.++|++.+++. +++-++|+|++ +|||.|.+..|.+.+..+..+.++.|+.+++.+ +..+....
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 456788887654 46679999987 799999999999999999888889999999754 33556666
Q ss_pred CC-CcccEEEEEcCC
Q 041160 144 QV-RGLPTLFFISPD 157 (182)
Q Consensus 144 ~i-~~~Pt~~~~~~~ 157 (182)
++ .++||++=+++.
T Consensus 91 ~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQ 105 (128)
T ss_pred CceeecceeeEEcCc
Confidence 76 899999999853
No 154
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.67 E-value=2e-07 Score=73.71 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=75.3
Q ss_pred eeeec-CHHHHHHHHHc-CCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEE
Q 041160 75 LVKKK-TAQEIQELVRG-ERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLF 152 (182)
Q Consensus 75 ~v~~~-~~~~~~~~l~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~ 152 (182)
.|..+ ++++|.+.+.. .++..|||.||.+.++.|..+...|..||.+|+ .+.|++|..+..+ +..+|.+.++||++
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEEE
Confidence 46666 46788888754 345679999999999999999999999999998 7999999987765 78899999999999
Q ss_pred EEcCCCCeeeeeecC-------CCCHHHHHHHHHhh
Q 041160 153 FISPDPNKDAIRTEG-------LIPIQMMRDIIDNE 181 (182)
Q Consensus 153 ~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~~ 181 (182)
+|.+| ..+..+.| ..+.++|..+|.++
T Consensus 204 vYk~G--~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 204 VYKNG--DLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEETT--EEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEECC--EEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99965 23334333 24567888888654
No 155
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.3e-06 Score=63.59 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=80.2
Q ss_pred cccCceeeecCHHHHHHHHHcCCCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC------------
Q 041160 70 VREDYLVKKKTAQEIQELVRGERNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD------------ 135 (182)
Q Consensus 70 ~~~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~------------ 135 (182)
..|++.+...+++.+. |.+.+|++||++|| ..|++.|-.+.-.|++...++.. ++.++.|+.|.
T Consensus 9 ~aPdF~Lp~~~g~~v~--Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 9 KAPDFELPDQDGETVS--LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred cCCCeEeecCCCCEEe--hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 4456666666665533 55667999999999 79999999999999999999976 58899998754
Q ss_pred ---------cHHHHHhcCCC------------cccEEEEEcCCCCeeeeeecCC---CCHHHHHHHHHhh
Q 041160 136 ---------EYEFARDMQVR------------GLPTLFFISPDPNKDAIRTEGL---IPIQMMRDIIDNE 181 (182)
Q Consensus 136 ---------~~~~~~~~~i~------------~~Pt~~~~~~~g~~~~~~~~g~---~~~~~l~~~l~~~ 181 (182)
+.++++.||+. ..+++++++++|++ .+.+... -..+++.+.|+++
T Consensus 87 L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I-~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 87 LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKI-RYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeE-EEEecCCCCcccHHHHHHHHHHh
Confidence 55788888873 36889999998864 3333332 2356777777654
No 156
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.51 E-value=1.1e-06 Score=69.20 Aligned_cols=85 Identities=14% Similarity=0.243 Sum_probs=63.5
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEEC--------------------------------------
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDT-------------------------------------- 133 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-------------------------------------- 133 (182)
.++.+|+.|.-+.||+|+++.+.+.++.+. +++.+..+-.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 367889999999999999999998887654 2454443321
Q ss_pred ------------CCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 134 ------------DDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 134 ------------d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
+++.++.+++||.++|++++-+.+| ......|..+.++|.+.|..
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G--~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG--TLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--CEEEecCCCCHHHHHHHhCC
Confidence 0122477789999999999998666 34456899999999998863
No 157
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.50 E-value=1e-06 Score=55.22 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=47.1
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHh----cCCCcccEEEEEcCCCCeeeeeecCCCCHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARD----MQVRGLPTLFFISPDPNKDAIRTEGLIPIQ 172 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~----~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~ 172 (182)
++.|+++||++|+.+...+++. ++.+..+|++.+.+..+. .++.++|++++ + + . ...| .+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~-~--~---~i~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI-G-D--E---HLSG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE-C-C--E---EEec-CCHH
Confidence 5789999999999988877662 466777888876654443 36889999965 2 2 1 2234 5666
Q ss_pred HHHHHH
Q 041160 173 MMRDII 178 (182)
Q Consensus 173 ~l~~~l 178 (182)
.|.++|
T Consensus 68 ~l~~~~ 73 (73)
T cd02976 68 KLRALL 73 (73)
T ss_pred HHHhhC
Confidence 776653
No 158
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.48 E-value=2.1e-06 Score=59.32 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=76.5
Q ss_pred ecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHH---hcCCcEEEEEECCCcHHHHHhcCCCc--ccEEE
Q 041160 78 KKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVE---YESSAMIVKVDTDDEYEFARDMQVRG--LPTLF 152 (182)
Q Consensus 78 ~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~---~~~~v~~~~vd~d~~~~~~~~~~i~~--~Pt~~ 152 (182)
++|.++...+... +.+..+.|+ -=..-......+.+++++ +++++.|+.+|.++.....+.||+.. +|.+.
T Consensus 3 e~t~e~~~~~~~~--~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 3 EITFENAEELTEE--GLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred ccccccHHHHhcC--CCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 4566677666554 445555566 222236778899999999 99999999999999888999999987 89999
Q ss_pred EEcCCCCeeeee-ecCCCCHHHHHHHHHhhC
Q 041160 153 FISPDPNKDAIR-TEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 153 ~~~~~g~~~~~~-~~g~~~~~~l~~~l~~~l 182 (182)
+.+.++. ..+. ..+..+.+.|.+|+++.+
T Consensus 79 i~~~~~~-~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 79 IDSFRHM-YLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEcchhc-CcCCCCccccCHHHHHHHHHHHh
Confidence 9987642 2333 567889999999998763
No 159
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.48 E-value=1.6e-06 Score=75.52 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
++.+..+ .+...++..-+-.|.++||++|......+++++.+.+ ++..-.+|.++.++++++|+|.++|++++ + +
T Consensus 463 l~~~~~~-~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i-~-~- 537 (555)
T TIGR03143 463 LGEELLE-KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV-D-D- 537 (555)
T ss_pred CCHHHHH-HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE-C-C-
Confidence 3333333 3344433334666789999999999999999999977 79999999999999999999999999966 2 2
Q ss_pred CeeeeeecCCCCHHHHHHHH
Q 041160 159 NKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 159 ~~~~~~~~g~~~~~~l~~~l 178 (182)
+ . .+.|..+.+++.++|
T Consensus 538 ~-~--~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 538 Q-Q--VYFGKKTIEEMLELI 554 (555)
T ss_pred E-E--EEeeCCCHHHHHHhh
Confidence 1 2 245878999999887
No 160
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.45 E-value=1.6e-06 Score=67.46 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEEC--------------------------------------
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDT-------------------------------------- 133 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-------------------------------------- 133 (182)
.++.+++.|.-+.||+|+++.+.+.++.+ .++.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 47888999999999999999999888754 1344433221
Q ss_pred ------CCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 134 ------DDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 134 ------d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+++.++++++||.++|+++ +.+| + ...|..+.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G-~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG-T----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC-e----EeeCCCCHHHHHHHHHHc
Confidence 1244788999999999998 4333 2 237889999999999864
No 161
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.45 E-value=9e-07 Score=58.01 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=55.6
Q ss_pred EEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcC--CCcccEEEEEcCCCCeeeeeecCCC
Q 041160 96 IIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY----EFARDMQ--VRGLPTLFFISPDPNKDAIRTEGLI 169 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~--i~~~Pt~~~~~~~g~~~~~~~~g~~ 169 (182)
-|+.|+.+||++|++....|+++..++. ++.+..+|+++++ ++.+..+ +..+|+++ ++ | + .+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if-i~-g-~-~i----g-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF-VD-Q-K-HI----G-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE-EC-C-E-EE----c--
Confidence 4788999999999999999999998764 6888899988753 5555555 47899975 43 3 1 21 2
Q ss_pred CHHHHHHHHHhh
Q 041160 170 PIQMMRDIIDNE 181 (182)
Q Consensus 170 ~~~~l~~~l~~~ 181 (182)
..+++.++++++
T Consensus 71 g~~~~~~~~~~~ 82 (85)
T PRK11200 71 GCTDFEAYVKEN 82 (85)
T ss_pred CHHHHHHHHHHh
Confidence 347788777765
No 162
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.40 E-value=5e-06 Score=67.11 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=70.8
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhH------HHHHHHHHHh-cC-CcEEEEEECCCcHHHHHhcCCC
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMA------QEIELLAVEY-ES-SAMIVKVDTDDEYEFARDMQVR 146 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~------p~l~~l~~~~-~~-~v~~~~vd~d~~~~~~~~~~i~ 146 (182)
.|..+|..+|.+.+++. +..+|+|+.+-- .-+... ..+-+|+.+. .. .+.|+.||..++..+++++|+.
T Consensus 35 RVi~LneKNfk~~lKky--d~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 35 RVIDLNEKNFKRALKKY--DVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp -CEEE-TTTHHHHHHH---SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred ceEEcchhHHHHHHHhh--cEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 47889999999999884 467788887663 333332 2233444443 22 5999999999999999999999
Q ss_pred cccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 147 GLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
..+++.+|.+| .++.|.|.++++.+.+||-++
T Consensus 112 E~~SiyVfkd~---~~IEydG~~saDtLVeFl~dl 143 (383)
T PF01216_consen 112 EEGSIYVFKDG---EVIEYDGERSADTLVEFLLDL 143 (383)
T ss_dssp STTEEEEEETT---EEEEE-S--SHHHHHHHHHHH
T ss_pred ccCcEEEEECC---cEEEecCccCHHHHHHHHHHh
Confidence 99999999876 577889999999999999765
No 163
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.9e-07 Score=69.97 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=65.9
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCC
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIP 170 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~ 170 (182)
+++.+++.||+.||.+|+.+...++.+++.. .++.+++++.++.+++++.+.+.++|+++++..+. ...+..|...
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~--~v~~l~~~~~ 91 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGE--KVDRLSGADP 91 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecch--hhhhhhccCc
Confidence 5889999999999999999999999999998 47999999999999999999999999999996552 3445555433
No 164
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.37 E-value=4.6e-06 Score=72.14 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=73.2
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
++++..+ .+++..+..-+..|.+++|++|......+++++...+ ++..-.+|..+.++++++|++.++|++++ + +
T Consensus 103 l~~~~~~-~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i-~-~- 177 (517)
T PRK15317 103 LDQEVIE-QIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL-N-G- 177 (517)
T ss_pred CCHHHHH-HHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE-C-C-
Confidence 3333333 3444434455888999999999999999999999876 79999999999999999999999999965 3 3
Q ss_pred CeeeeeecCCCCHHHHHHHHHh
Q 041160 159 NKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 159 ~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
. . .+.|..+.+++.+.+.+
T Consensus 178 ~-~--~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 178 E-E--FGQGRMTLEEILAKLDT 196 (517)
T ss_pred c-E--EEecCCCHHHHHHHHhc
Confidence 2 2 35688888888887754
No 165
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.33 E-value=1.9e-06 Score=64.12 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=72.1
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPN 159 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~ 159 (182)
++.+|-+....+ ..||+.||-+.-..|+-|...|+.+++.+- ...|++||+...+=++.+++|..+|++++|.+|.
T Consensus 73 ~Ekdf~~~~~kS--~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~- 148 (211)
T KOG1672|consen 73 SEKDFFEEVKKS--EKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGK- 148 (211)
T ss_pred cHHHHHHHhhcC--ceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEEcCE-
Confidence 688888887663 459999999999999999999999999987 5889999999999999999999999999999873
Q ss_pred eeeeeecC
Q 041160 160 KDAIRTEG 167 (182)
Q Consensus 160 ~~~~~~~g 167 (182)
...++.|
T Consensus 149 -~~D~iVG 155 (211)
T KOG1672|consen 149 -TVDYVVG 155 (211)
T ss_pred -EEEEEee
Confidence 3444444
No 166
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.30 E-value=1e-05 Score=58.05 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=31.5
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEE
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKV 131 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 131 (182)
++++|+.|+..+||+|+.+.|.+.++..+++ ++.+...
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~ 42 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK 42 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence 6788999999999999999999999888775 4544443
No 167
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.30 E-value=3.9e-06 Score=63.59 Aligned_cols=76 Identities=14% Similarity=0.311 Sum_probs=54.5
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEE--EC-------------------------------------
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKV--DT------------------------------------- 133 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v--d~------------------------------------- 133 (182)
+++.++.|+.++|++|+++.+.+.+ ..+++.+..+ ..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 6789999999999999999999887 2223333222 11
Q ss_pred ------CCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 134 ------DDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 134 ------d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+++.++++++||.++|+++ +++| . ...|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G-~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADG-R----VVPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCC-e----EecCCCCHHHHHhhC
Confidence 1234678899999999997 6544 2 246888888887764
No 168
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.30 E-value=6.7e-06 Score=58.39 Aligned_cols=103 Identities=12% Similarity=0.246 Sum_probs=74.0
Q ss_pred eeecCHHHH-HHHHHcCCCCcEEEEEEcC--CChh-H-HHhHHHHHHHHHHhcCC-cEEEEEECCCcHHHHHhcCCC--c
Q 041160 76 VKKKTAQEI-QELVRGERNVPIIIDFYAT--WCGP-C-ILMAQEIELLAVEYESS-AMIVKVDTDDEYEFARDMQVR--G 147 (182)
Q Consensus 76 v~~~~~~~~-~~~l~~~~~k~vvv~F~a~--wC~~-C-~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~~~~~~i~--~ 147 (182)
+.+++.+++ ++.-.+ ++ .=+|-|.-. .|.. + ......+++++++++++ +.|+.+|.++...+.+.||+. +
T Consensus 4 ~~~l~~~~~~~~~C~~-~~-~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 4 IIELTSEDVFEETCEE-KQ-LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred eEEecCHHHHHhhccC-CC-eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 445554444 444433 23 234444321 2333 3 35678899999999999 999999999999999999995 5
Q ss_pred ccEEEEEcCCCCeeeee-ecCCCCHHHHHHHHHhhC
Q 041160 148 LPTLFFISPDPNKDAIR-TEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 148 ~Pt~~~~~~~g~~~~~~-~~g~~~~~~l~~~l~~~l 182 (182)
+|++++++.+++ .+. +.|..+.+.|.+|+++.+
T Consensus 82 ~P~v~i~~~~~~--KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 82 YPAMVAINFRKM--KFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred CCEEEEEecccC--ccccccCccCHHHHHHHHHHHH
Confidence 999999988643 333 678899999999998763
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.29 E-value=9e-06 Score=70.95 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCee
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKD 161 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~ 161 (182)
+++.+.+.+.++.+.++.|+.+.|..|..+...+++++.. .+++.+...|..++.++.++|++...|++.+++.+|+..
T Consensus 355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~ 433 (555)
T TIGR03143 355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYT 433 (555)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCccc
Confidence 3466667666666678889999999999999999999954 558999899999999999999999999999997665555
Q ss_pred eeeecCCCCHHHHHHHHHhh
Q 041160 162 AIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 162 ~~~~~g~~~~~~l~~~l~~~ 181 (182)
.++|.|...-.++..||..+
T Consensus 434 ~i~f~g~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 434 GLKFHGVPSGHELNSFILAL 453 (555)
T ss_pred ceEEEecCccHhHHHHHHHH
Confidence 68899988888998888754
No 170
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.29 E-value=9.9e-06 Score=55.93 Aligned_cols=75 Identities=7% Similarity=0.074 Sum_probs=62.3
Q ss_pred hhHHHhHHHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCc----ccEEEEEcCCCCeeeeeecCCC-CHHHHHHHHH
Q 041160 106 GPCILMAQEIELLAVEYE-SSAMIVKVDTDDEYEFARDMQVRG----LPTLFFISPDPNKDAIRTEGLI-PIQMMRDIID 179 (182)
Q Consensus 106 ~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~i~~----~Pt~~~~~~~g~~~~~~~~g~~-~~~~l~~~l~ 179 (182)
..-......+.+++++++ +++.|+.+|.++.....+.||+.. .|++.+++.++ ..+...+.. +.+.|.+|++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~--~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG--KKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC--CccCCCcccCCHHHHHHHHH
Confidence 444668889999999999 699999999999888999999974 99999998654 234456777 9999999998
Q ss_pred hhC
Q 041160 180 NEM 182 (182)
Q Consensus 180 ~~l 182 (182)
+.+
T Consensus 109 ~f~ 111 (111)
T cd03073 109 DFF 111 (111)
T ss_pred HhC
Confidence 753
No 171
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.27 E-value=4.1e-06 Score=54.48 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=61.7
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRD 176 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~ 176 (182)
++.|..+.|+-|......++++..+. .+.+-.||+++++++.++|+. .+|.+.+-+..+........+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 67899999999999999999876554 489999999999999999996 799976554222222344567789999999
Q ss_pred HHH
Q 041160 177 IID 179 (182)
Q Consensus 177 ~l~ 179 (182)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 986
No 172
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.20 E-value=4e-05 Score=52.08 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=66.2
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCC-cccEEEE
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE----FARDMQVR-GLPTLFF 153 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~-~~Pt~~~ 153 (182)
-+.+++++++.++..++++|.=.++.||-.......|++.....++++.++.+|+-++++ ++++|||. .=|-+++
T Consensus 5 ~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 5 TTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp -SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred CCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 378999999998878899998899999999999999999999988679999999988875 58899986 6799999
Q ss_pred EcCCCCeeeeeecCCCCHHHH
Q 041160 154 ISPDPNKDAIRTEGLIPIQMM 174 (182)
Q Consensus 154 ~~~~g~~~~~~~~g~~~~~~l 174 (182)
+++| +..-....+.++.+.|
T Consensus 85 i~~g-~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNG-KVVWHASHWDITAEAL 104 (105)
T ss_dssp EETT-EEEEEEEGGG-SHHHH
T ss_pred EECC-EEEEECccccCCHHhc
Confidence 9876 3332333344565554
No 173
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.19 E-value=4.9e-06 Score=54.71 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=53.3
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcCC--CcccEEEEEcCCCCeeeeeecCCCC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY----EFARDMQV--RGLPTLFFISPDPNKDAIRTEGLIP 170 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~i--~~~Pt~~~~~~~g~~~~~~~~g~~~ 170 (182)
|+.|..+||++|++....|+++..++. .+.+..+|++.+. ++.+..+- ..+|.+ +++ + + . .| .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i-fi~-g-~-~----ig--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQI-FVD-E-K-H----VG--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE-EEC-C-E-E----ec--C
Confidence 678999999999999999999876654 4778888887533 56667774 789999 454 2 1 1 12 3
Q ss_pred HHHHHHHHHhh
Q 041160 171 IQMMRDIIDNE 181 (182)
Q Consensus 171 ~~~l~~~l~~~ 181 (182)
.++|.+++++.
T Consensus 71 ~~dl~~~~~~~ 81 (86)
T TIGR02183 71 CTDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHHhc
Confidence 37788877654
No 174
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.19 E-value=5.7e-05 Score=54.85 Aligned_cols=81 Identities=22% Similarity=0.433 Sum_probs=62.5
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHh--cCCcEEEEEECCCc----------------------------------
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEY--ESSAMIVKVDTDDE---------------------------------- 136 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~---------------------------------- 136 (182)
.+++|+.|+..-|++|+++.+.+.++.+++ ++++.+...+.-..
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 577899999999999999999999999999 67888888765210
Q ss_pred ----------------------------------HHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 137 ----------------------------------YEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 137 ----------------------------------~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
....+++||.++||+++ +|+. ..|..+.+++.++|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i---nG~~----~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI---NGKY----VVGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE---TTCE----EETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE---CCEE----eCCCCCHHHHHHHHcC
Confidence 02355689999999988 3332 3678899999999975
No 175
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.18 E-value=7.2e-06 Score=52.91 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhcCCCcccEEEEEc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-----EFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~~i~~~Pt~~~~~ 155 (182)
|+.|+++|||+|+.+...++++.. .+.++.++.+.+. .+.+..|+.++|++ +++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~ 60 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIG 60 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 578999999999999999988754 3567777777652 34566788999997 443
No 176
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.8e-05 Score=63.06 Aligned_cols=106 Identities=21% Similarity=0.405 Sum_probs=81.7
Q ss_pred eeeecCHHHHHHHHHcC-CCCcEEEEEEcC----CChhHHHhHHHHHHHHHHhc------C--CcEEEEEECCCcHHHHH
Q 041160 75 LVKKKTAQEIQELVRGE-RNVPIIIDFYAT----WCGPCILMAQEIELLAVEYE------S--SAMIVKVDTDDEYEFAR 141 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~-~~k~vvv~F~a~----wC~~C~~~~p~l~~l~~~~~------~--~v~~~~vd~d~~~~~~~ 141 (182)
-|..++++.|..++... ++-.++++|.|. .|.-|+.+..++.-++..+. + ++-|..||.|+.+++.+
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq 120 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ 120 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence 47888999999988743 466678888875 49999999999999998764 1 57799999999999999
Q ss_pred hcCCCcccEEEEEcCC-CCeee----e-eecCCCCHHHHHHHHHhh
Q 041160 142 DMQVRGLPTLFFISPD-PNKDA----I-RTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 142 ~~~i~~~Pt~~~~~~~-g~~~~----~-~~~g~~~~~~l~~~l~~~ 181 (182)
.+++..+|++++|.+. |++.. . .-.| ..+|.+.+|+++.
T Consensus 121 ~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 121 QLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLG-FEAEQIAQFVADR 165 (331)
T ss_pred HhcccCCCeEEEeCCCccccccCccchhhhcc-hhHHHHHHHHHHh
Confidence 9999999999999543 22210 0 1112 3488999998753
No 177
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.16 E-value=1.2e-05 Score=48.97 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=39.4
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCcccEEEE
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE----FARDMQVRGLPTLFF 153 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~~~Pt~~~ 153 (182)
|+.|+.+||++|++....|++. ++.+-.+|++++++ +.+..|...+|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999888888433 47788888887753 334459999999975
No 178
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.10 E-value=3.8e-05 Score=66.42 Aligned_cols=94 Identities=12% Similarity=0.209 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
++++..+ .+.+..+..-+..|.++.|++|......+++++..++ ++..-.+|..+.+++.++|++.++|++++ + +
T Consensus 104 l~~~~~~-~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i-~-~- 178 (515)
T TIGR03140 104 LDEGIID-RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL-N-G- 178 (515)
T ss_pred CCHHHHH-HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE-C-C-
Confidence 4444444 3444434455888999999999999999999999877 78888899999999999999999999975 3 2
Q ss_pred CeeeeeecCCCCHHHHHHHHHh
Q 041160 159 NKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 159 ~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
. . .+.|..+.+++.+.+.+
T Consensus 179 ~-~--~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 179 E-E--FHNGRMDLAELLEKLEE 197 (515)
T ss_pred c-E--EEecCCCHHHHHHHHhh
Confidence 2 2 35687888888776653
No 179
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.10 E-value=9e-05 Score=49.32 Aligned_cols=91 Identities=11% Similarity=0.258 Sum_probs=68.9
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCC
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPN 159 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~ 159 (182)
+.++++..+.. .++++|-|+.++|++ ....+.++++.+++++.|+.++ +.++..++++. .|++++|++..
T Consensus 6 s~~~l~~~~~~--~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~- 75 (97)
T cd02981 6 SKEELEKFLDK--DDVVVVGFFKDEESE---EYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFE- 75 (97)
T ss_pred CHHHHHHHhcc--CCeEEEEEECCCCcH---HHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcc-
Confidence 45556665554 667899999999984 6688899999998778887665 56778888775 48999997642
Q ss_pred eeeeeecCCCCHHHHHHHHHh
Q 041160 160 KDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 160 ~~~~~~~g~~~~~~l~~~l~~ 180 (182)
.....|.|..+.+.|.+||..
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHh
Confidence 234567888889999999975
No 180
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.04 E-value=2.7e-05 Score=50.28 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=40.3
Q ss_pred CcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc---HHHHHhcCCCcccEEE
Q 041160 94 VPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE---YEFARDMQVRGLPTLF 152 (182)
Q Consensus 94 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~~~~~~i~~~Pt~~ 152 (182)
+.-|+.|+.+||++|++....|++. ++.+..+|++++ .++.+..|...+|.++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 3457889999999999998888643 466667777765 3455567889999995
No 181
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.04 E-value=2.4e-05 Score=48.60 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=38.5
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCcccEEE
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEF----ARDMQVRGLPTLF 152 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i~~~Pt~~ 152 (182)
++.|+++||++|++....|++.. +.+..+|++.+.+. .+..+...+|+++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 56799999999999999888763 66778888876543 4445778889774
No 182
>PHA03050 glutaredoxin; Provisional
Probab=98.00 E-value=4.9e-05 Score=52.21 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.8
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC---c----HHHHHhcCCCcccEEEEEc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD---E----YEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~----~~~~~~~~i~~~Pt~~~~~ 155 (182)
|+.|..+|||+|++....|++..-+.+ .|-.+|+++ . .++.+..|...+|++ |++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-fI~ 76 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRI-FFG 76 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE-EEC
Confidence 778999999999999888877643322 344555554 2 245666788899999 553
No 183
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.98 E-value=2.9e-05 Score=49.15 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=47.2
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhc---CCCcccEEEEEcCCCCeeeeeecCCCCHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDM---QVRGLPTLFFISPDPNKDAIRTEGLIPIQM 173 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~---~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~ 173 (182)
+..|+.+||++|++....|++. ++.+-.+|++++++..+.+ |...+|++++ + | . . ...| ...+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~-~-g-~-~--~~~G-~~~~~ 67 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA-D-G-D-L--SWSG-FRPDK 67 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE-C-C-C-c--EEec-cCHHH
Confidence 3568899999999999888752 5778888998887665544 8889999744 3 2 1 1 2234 56676
Q ss_pred HHH
Q 041160 174 MRD 176 (182)
Q Consensus 174 l~~ 176 (182)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 654
No 184
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.91 E-value=0.00011 Score=54.19 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEE
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVK 130 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~ 130 (182)
+++.|+.|+...||+|+.+.+.+.++.+++++++.+..
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~ 52 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEK 52 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEE
Confidence 67899999999999999999999999999876666543
No 185
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.91 E-value=0.00023 Score=46.20 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=50.6
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHH---HhcCCCcccEEEEEcCCCCeeeeeecCCCCHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFA---RDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQM 173 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~---~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~ 173 (182)
+..|..+||++|+.....|++. ++.|-.+|++++++.. +..|...+|++++ + + .. ..| ...+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~-~---~~--~~G-f~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-G-D---LS--WSG-FRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-C-C---EE--Eec-CCHHH
Confidence 6778999999999988888542 5888889998877643 3457789999954 2 2 11 235 67888
Q ss_pred HHHHHHh
Q 041160 174 MRDIIDN 180 (182)
Q Consensus 174 l~~~l~~ 180 (182)
|.+++..
T Consensus 69 l~~~~~~ 75 (81)
T PRK10329 69 INRLHPA 75 (81)
T ss_pred HHHHHHh
Confidence 8887654
No 186
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.87 E-value=4.8e-05 Score=48.88 Aligned_cols=52 Identities=13% Similarity=0.325 Sum_probs=38.0
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCcccEEEEEc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEF----ARDMQVRGLPTLFFIS 155 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i~~~Pt~~~~~ 155 (182)
|+.|+.+||++|++....+++. ++.+-.+|++.+++. .+..+...+|++ +++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i-~i~ 56 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI-FIG 56 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE-EEC
Confidence 4678999999999999888753 355666777776544 444577899997 553
No 187
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.86 E-value=6.2e-05 Score=50.83 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=35.7
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH-------HHHhcCCCcccEEEEEc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE-------FARDMQVRGLPTLFFIS 155 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-------~~~~~~i~~~Pt~~~~~ 155 (182)
|+.|..+|||+|++....|++. ++.+..+|+|++++ +.+..|...+|.+ +++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi~ 68 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FVG 68 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EEC
Confidence 7789999999999988877654 24444555554422 3334567899997 554
No 188
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.80 E-value=0.00014 Score=45.99 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=38.3
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCC-cccEEEEEc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEF----ARDMQVR-GLPTLFFIS 155 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i~-~~Pt~~~~~ 155 (182)
++.|+.+||++|++....|++. ++.+-.+|++.+++. .+..+.. .+|++ +++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v-~i~ 58 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI-FIG 58 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE-EEC
Confidence 5679999999999988888763 467777888876544 3445766 89977 454
No 189
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.78 E-value=8.9e-05 Score=48.57 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=45.6
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEEC--CC------------------------------cHHHHHhcC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDT--DD------------------------------EYEFARDMQ 144 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~--d~------------------------------~~~~~~~~~ 144 (182)
|..|+..+|++|..+.+.++++.+...+++.+....+ .. +....+++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999866666666655543 22 124567899
Q ss_pred CCcccEEEEEc
Q 041160 145 VRGLPTLFFIS 155 (182)
Q Consensus 145 i~~~Pt~~~~~ 155 (182)
+.++|++++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998875
No 190
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.76 E-value=0.00016 Score=45.79 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=40.1
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCcccEEEEEc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE----FARDMQVRGLPTLFFIS 155 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~~~Pt~~~~~ 155 (182)
++.|+.+||++|++....|++. ++.+..+|++++++ +.+..+-..+|.+ +++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v-~i~ 58 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI-FFN 58 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE-EEC
Confidence 6678999999999998888863 46777888887664 5556677888988 454
No 191
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.76 E-value=0.00024 Score=54.32 Aligned_cols=40 Identities=13% Similarity=0.430 Sum_probs=32.5
Q ss_pred CCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEE
Q 041160 93 NVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVD 132 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd 132 (182)
+++.||.|+.-.||+|+.+.+.+ +.+.+.+++++.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56679999999999999999976 88888888766655443
No 192
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.68 E-value=0.0018 Score=45.09 Aligned_cols=100 Identities=11% Similarity=0.298 Sum_probs=70.7
Q ss_pred eecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHH-HHhc--CCcEEEEEECC-----CcHHHHHhcCC--C
Q 041160 77 KKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLA-VEYE--SSAMIVKVDTD-----DEYEFARDMQV--R 146 (182)
Q Consensus 77 ~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~-~~~~--~~v~~~~vd~d-----~~~~~~~~~~i--~ 146 (182)
..++.-+|+..+.. -+.++|-|=... |--.-...+.+++ +... +++-++.|-+. +|.+++++|++ .
T Consensus 7 v~LD~~tFdKvi~k--f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 7 VPLDELTFDKVIPK--FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp EEESTTHHHHHGGG--SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred eeccceehhheecc--CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 45688899999987 568999996543 1122346778888 4332 36778888764 47899999999 5
Q ss_pred cccEEEEEcCCCCeeeeee--cCCCCHHHHHHHHHhh
Q 041160 147 GLPTLFFISPDPNKDAIRT--EGLIPIQMMRDIIDNE 181 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~~~~~~--~g~~~~~~l~~~l~~~ 181 (182)
.+|.+.+|..+ .....++ .|..+.+.|..|++++
T Consensus 83 ~fPv~~LF~~~-~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 83 DFPVIYLFVGD-KEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp C-SEEEEEESS-TTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred cCCEEEEecCC-CCCCccCCccCCccHHHHHHHHHhC
Confidence 78999999844 4566777 8889999999999865
No 193
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.66 E-value=0.00013 Score=49.89 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=63.9
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCC---hhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEE
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWC---GPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLF 152 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC---~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~ 152 (182)
...++.+++++.+... .. .+.|++..| +.+....=.+-++.+.+++.+..+.++-+.++++..+||+...|+++
T Consensus 11 ~~~vd~~~ld~~l~~~--~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAP--GD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp EEEE-CCCHHHHHHCC--SC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred CeeechhhHHHHHhCC--Cc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 4556788888888763 23 445555554 44444555788888889888888888877889999999999999999
Q ss_pred EEcCCCCeeeeeecCCCC
Q 041160 153 FISPDPNKDAIRTEGLIP 170 (182)
Q Consensus 153 ~~~~~g~~~~~~~~g~~~ 170 (182)
++++| .......|.++
T Consensus 88 f~R~g--~~lG~i~gi~d 103 (107)
T PF07449_consen 88 FFRDG--RYLGAIEGIRD 103 (107)
T ss_dssp EEETT--EEEEEEESSST
T ss_pred EEECC--EEEEEecCeec
Confidence 99876 34555566544
No 194
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.66 E-value=0.00027 Score=44.56 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=45.2
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH---HHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE---FARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQM 173 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~ 173 (182)
++.|..+||++|.+....|++. ++.+..+|++++.. +.+..|...+|.+ +++ | + .+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i-fi~-g-~-~i----g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV-FID-G-E-LI----G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE-EEC-C-E-EE----e--CHHH
Confidence 6789999999999998877742 46667777776543 3444688899997 554 3 1 21 2 3567
Q ss_pred HHHHH
Q 041160 174 MRDII 178 (182)
Q Consensus 174 l~~~l 178 (182)
+.++|
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 77665
No 195
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.64 E-value=0.00054 Score=46.05 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCCcEEEEEE----cCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCcccEEEEE
Q 041160 83 EIQELVRGERNVPIIIDFY----ATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEF----ARDMQVRGLPTLFFI 154 (182)
Q Consensus 83 ~~~~~l~~~~~k~vvv~F~----a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i~~~Pt~~~~ 154 (182)
.++++++++ .|+|+-. ++|||+|++....|++. ++.+..+|++++++. .+..|...+|.+ ++
T Consensus 4 ~v~~~i~~~---~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v-fi 73 (97)
T TIGR00365 4 RIKEQIKEN---PVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL-YV 73 (97)
T ss_pred HHHHHhccC---CEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE-EE
Confidence 344555443 3444433 28999999988888765 356777888776643 445567788988 45
Q ss_pred c
Q 041160 155 S 155 (182)
Q Consensus 155 ~ 155 (182)
+
T Consensus 74 ~ 74 (97)
T TIGR00365 74 K 74 (97)
T ss_pred C
Confidence 4
No 196
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.63 E-value=0.00043 Score=53.58 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=49.5
Q ss_pred CccccCceeeecCHHHHHHHHHc-CCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEE
Q 041160 68 KYVREDYLVKKKTAQEIQELVRG-ERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKV 131 (182)
Q Consensus 68 ~~~~~~~~v~~~~~~~~~~~l~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 131 (182)
...+|+..|..+++.....++.= ..++|.|++|.+-.||+=+.-...+++++++|.+.+.|+.|
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 34467778888888774444431 23899999999999999999999999999999875445544
No 197
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.49 E-value=0.00062 Score=50.77 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=25.8
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEE
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKV 131 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 131 (182)
+|..|+|+.|-...|.+.++..+++.++.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 589999999999999999999999987655443
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00055 Score=60.07 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=63.7
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCCcHHHHHhcC--------CCcc
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDDEYEFARDMQ--------VRGL 148 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~--------i~~~ 148 (182)
+.+.|.+.-.+ +|||+|-...+||..|..|..+- .++++-+....+-++||-++-+++-+.|+ -.|.
T Consensus 32 ~~eAf~~A~~e--dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 32 GEEAFAKAKEE--DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred CHHHHHHHHHh--CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 56677766544 89999999999999999998755 66777776678889999999887766664 5689
Q ss_pred cEEEEEcCCCC
Q 041160 149 PTLFFISPDPN 159 (182)
Q Consensus 149 Pt~~~~~~~g~ 159 (182)
|-.+|+-++|+
T Consensus 110 PLtVfLTPd~k 120 (667)
T COG1331 110 PLTVFLTPDGK 120 (667)
T ss_pred ceeEEECCCCc
Confidence 99999999875
No 199
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.46 E-value=0.00045 Score=50.43 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=33.6
Q ss_pred CCCcEEEEE-EcCCChhHHHh-HHHHHHHHHHhcC-Cc-EEEEEECCC
Q 041160 92 RNVPIIIDF-YATWCGPCILM-AQEIELLAVEYES-SA-MIVKVDTDD 135 (182)
Q Consensus 92 ~~k~vvv~F-~a~wC~~C~~~-~p~l~~l~~~~~~-~v-~~~~vd~d~ 135 (182)
+|+++||.| .+.||+.|..+ .+.|.+.++++.. ++ .++.|+.|.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 355555555 49999999999 9999999999864 35 477777654
No 200
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00067 Score=43.95 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=36.5
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-----HHHHhc-CCCcccEEEE
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-----EFARDM-QVRGLPTLFF 153 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~-~i~~~Pt~~~ 153 (182)
++.|..+|||+|++....|++. .+.+..++++.+. +..++. |...+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 6778999999999988887732 4666666665544 344455 7899998844
No 201
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.40 E-value=0.001 Score=43.99 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCCCcccEEEEEc
Q 041160 103 TWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEF----ARDMQVRGLPTLFFIS 155 (182)
Q Consensus 103 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i~~~Pt~~~~~ 155 (182)
+||++|++....|++. ++.|-.+|+++++++ .+..|-..+|.+ +++
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL-YVN 70 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE-EEC
Confidence 6999999988888775 256777777776644 445677889997 553
No 202
>PRK10638 glutaredoxin 3; Provisional
Probab=97.37 E-value=0.001 Score=43.15 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=37.0
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCcccEE
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE----FARDMQVRGLPTL 151 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~~~Pt~ 151 (182)
++.|..+||++|++....|++. ++.+..+|++++++ +.+..+...+|++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 6678899999999988888764 35566778776653 4555677889977
No 203
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0029 Score=43.06 Aligned_cols=63 Identities=16% Similarity=0.364 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-H----HHHhcCCCcccEEEE
Q 041160 83 EIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-E----FARDMQVRGLPTLFF 153 (182)
Q Consensus 83 ~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~----~~~~~~i~~~Pt~~~ 153 (182)
.+.+++.++ -+|.|..+||++|+++...|.+ ++....++.+|-+++. + +.+.-+-+.+|.+++
T Consensus 6 ~v~~~i~~~----~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISEN----PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhcC----CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 455566553 2777999999999987666666 4445777788777654 2 233344567888743
No 204
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.26 E-value=0.0044 Score=45.71 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCC-CCHHHHHHHHHhh
Q 041160 111 MAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGL-IPIQMMRDIIDNE 181 (182)
Q Consensus 111 ~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~~ 181 (182)
....+.++++.+.+++.|+.++ +.++++++++.. |++++++++++ ....+.|. .+.+.|.+||++.
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~-~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDE-KPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTT-SEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCC-CceecccccCCHHHHHHHHHHh
Confidence 4568899999999889998887 778999999988 99999988543 45677786 7999999999864
No 205
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.12 E-value=0.01 Score=39.86 Aligned_cols=97 Identities=10% Similarity=0.155 Sum_probs=70.9
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC--cHHHHHhcCCC----cccEEEE
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD--EYEFARDMQVR----GLPTLFF 153 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~i~----~~Pt~~~ 153 (182)
+-.+|..++.. .+.|++.|..+--. --.....+.+++++..|..+++.|||.. ...+|.++.+. --|..+.
T Consensus 8 d~KdfKKLLRT--r~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 8 DHKDFKKLLRT--RNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred chHHHHHHHhh--cCcEEEEEecchhh-HHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 55788888876 33477766655433 3345568899999999999999999986 77999999998 6665554
Q ss_pred EcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 154 ISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 154 ~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
--.+|. -...|....+...+..|+++
T Consensus 85 HYKdG~-fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGD-FHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCC-ccccccchhhHHHHHHHhhC
Confidence 444543 45566777888999999864
No 206
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.94 E-value=0.03 Score=37.34 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCee
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKD 161 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~ 161 (182)
+++.+.+..-++.+.++.|..+. ..|..+...+++++..-+ ++.+-..+.++ ..|++.+.+++ +..
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~-~~~ 73 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPG-EDT 73 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCC-Ccc
Confidence 45556666665655666777655 999999999999987654 66665444322 46999998765 334
Q ss_pred eeeecCCCCHHHHHHHHHhh
Q 041160 162 AIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 162 ~~~~~g~~~~~~l~~~l~~~ 181 (182)
.++|.|...-.++..+|.-+
T Consensus 74 gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 74 GIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred cEEEEecCCchhHHHHHHHh
Confidence 58899988889999988754
No 207
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0098 Score=43.05 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=63.8
Q ss_pred HHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCC-cEEEEEECCC--------cH---HHHH-hcCCC--------
Q 041160 88 VRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESS-AMIVKVDTDD--------EY---EFAR-DMQVR-------- 146 (182)
Q Consensus 88 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~--------~~---~~~~-~~~i~-------- 146 (182)
+.+.+||+++|.=.|+-|+.-- .-..|+.|++.|+++ ..++..-|++ +. ++|+ .|||+
T Consensus 20 l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~ 98 (162)
T COG0386 20 LSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKID 98 (162)
T ss_pred HHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEe
Confidence 4557799999999999999875 445678888888764 6677766653 11 1222 23321
Q ss_pred ---------------ccc------------EEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 147 ---------------GLP------------TLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 147 ---------------~~P------------t~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
..| +-++++++|+ ++.|+.-...++++...|+++|
T Consensus 99 VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~-VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 99 VNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGN-VVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred ecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCc-EEEeeCCCCChhhHHHHHHHHh
Confidence 111 4467887875 6778888888888888888765
No 208
>PRK10824 glutaredoxin-4; Provisional
Probab=96.77 E-value=0.01 Score=41.19 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCCcEEEEEEc-----CCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHH----hcCCCcccEEE
Q 041160 82 QEIQELVRGERNVPIIIDFYA-----TWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFAR----DMQVRGLPTLF 152 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a-----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~----~~~i~~~Pt~~ 152 (182)
+-++++++++ + ||.|.. +|||+|++....|+++. +.+..+|++++.++.+ .-|-..+|.+
T Consensus 6 ~~v~~~I~~~---~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI- 74 (115)
T PRK10824 6 EKIQRQIAEN---P-ILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQL- 74 (115)
T ss_pred HHHHHHHhcC---C-EEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeE-
Confidence 4455566553 2 444555 59999999988887762 4444566666654433 3355567766
Q ss_pred EE
Q 041160 153 FI 154 (182)
Q Consensus 153 ~~ 154 (182)
|+
T Consensus 75 FI 76 (115)
T PRK10824 75 WV 76 (115)
T ss_pred EE
Confidence 44
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.70 E-value=0.0054 Score=51.76 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=38.5
Q ss_pred EEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH---HHHh---------cCCCcccEEEE
Q 041160 96 IIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE---FARD---------MQVRGLPTLFF 153 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~~~~---------~~i~~~Pt~~~ 153 (182)
.|+.|..+|||+|++....|++. ++.+-.+|+++++. +.++ .|...+|++++
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 37789999999999888777764 47777888887663 2222 36788999854
No 210
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.51 E-value=0.00097 Score=53.34 Aligned_cols=92 Identities=13% Similarity=0.251 Sum_probs=70.1
Q ss_pred HHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEE-CCCcHHHHHhcCCCcccEEEEEcCCCCeeeee
Q 041160 86 ELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVD-TDDEYEFARDMQVRGLPTLFFISPDPNKDAIR 164 (182)
Q Consensus 86 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd-~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~ 164 (182)
+++..++.-++-+.||++|||..+...|.++-....+. .+....++ ....+.+.++|++.+.|++.+.+.. -..+
T Consensus 69 ~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t---~~~~ 144 (319)
T KOG2640|consen 69 DAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT---CPAS 144 (319)
T ss_pred HhhccccCCcccccchhcccCcccccCcccchhhhhcc-ccccccHHHHhhcccchhccccccCCcceeeccc---cchh
Confidence 33434446678899999999999999999988888776 34444432 2234577899999999999999764 5667
Q ss_pred ecCCCCHHHHHHHHHhh
Q 041160 165 TEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 165 ~~g~~~~~~l~~~l~~~ 181 (182)
+.|.+....|+++..+.
T Consensus 145 ~~~~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 145 YRGERDLASLVNFYTEI 161 (319)
T ss_pred hcccccHHHHHHHHHhh
Confidence 88888989998887664
No 211
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.47 E-value=0.037 Score=42.39 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=67.8
Q ss_pred ceeeecCHHHHHHHHHcCCCCcEEEEEEcCCCh-hHHHhHHHHHHHHHHhc-C---CcEEEEEECCCcH-----------
Q 041160 74 YLVKKKTAQEIQELVRGERNVPIIIDFYATWCG-PCILMAQEIELLAVEYE-S---SAMIVKVDTDDEY----------- 137 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~-~C~~~~p~l~~l~~~~~-~---~v~~~~vd~d~~~----------- 137 (182)
+.+..-+++.+... ..+|++++|+|.=+.|+ -|-.+...+.++.++.. + ++.++.|.+|.++
T Consensus 50 f~l~d~~G~~~~~~--~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 50 FELTDQDGKPFTLK--DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred eeeecCCCCEeecc--ccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 34444444444422 34599999999878877 49889998988888876 2 4666666666432
Q ss_pred ------------------HHHHhcCCCc---------------ccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 138 ------------------EFARDMQVRG---------------LPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 138 ------------------~~~~~~~i~~---------------~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
++++.|++.. --.+++++.+|+. ...+.+..+.+.+.+.|++++
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~-~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRF-LGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeE-EEEecCCCChHHHHHHHHHHh
Confidence 3444444431 2345777877754 444555556888888887653
No 212
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.44 E-value=0.091 Score=35.48 Aligned_cols=92 Identities=10% Similarity=0.186 Sum_probs=63.5
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC-
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP- 158 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g- 158 (182)
+.+++++.+.. .+.+||-|+..--+ .....+.++++.++++..|+... +.++...+++ .|++++|++..
T Consensus 7 s~~~l~~f~~~--~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~ 76 (104)
T cd03069 7 TEAEFEKFLSD--DDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRL 76 (104)
T ss_pred CHHHHHHHhcc--CCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhh
Confidence 56677777754 55677777666444 35678889999997777775443 3467788888 68888884311
Q ss_pred ----CeeeeeecCCCCHHHHHHHHHhh
Q 041160 159 ----NKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 159 ----~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
......|.|..+.+.|.+||+..
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 01234578888899999999864
No 213
>PTZ00062 glutaredoxin; Provisional
Probab=96.42 E-value=0.028 Score=42.90 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=31.2
Q ss_pred CCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHH----hcCCCcccEEE
Q 041160 103 TWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFAR----DMQVRGLPTLF 152 (182)
Q Consensus 103 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~----~~~i~~~Pt~~ 152 (182)
+||++|++....|++. ++.+..+|+++++++.+ ..|-..+|.++
T Consensus 126 p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred CCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence 7999999988887754 46677888887765433 34556677764
No 214
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.27 E-value=0.15 Score=34.16 Aligned_cols=92 Identities=11% Similarity=0.196 Sum_probs=63.4
Q ss_pred CHHHHHHHHH-cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC
Q 041160 80 TAQEIQELVR-GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 80 ~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
+.++++.++. + ...++|-|+..--++ ....+.++++.++++..|+.. .+.++...+++. .|.++++++..
T Consensus 7 ~~~~~e~~~~~~--~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~~~~ 77 (102)
T cd03066 7 SERELQAFENIE--DDIKLIGYFKSEDSE---HYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFYEPFM 77 (102)
T ss_pred CHHHHHHHhccc--CCeEEEEEECCCCCH---HHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEeCCCC
Confidence 6677888886 4 445666666654443 557788999999777777443 344667788764 68999996532
Q ss_pred Ceeeeee-cCCCCHHHHHHHHHhh
Q 041160 159 NKDAIRT-EGLIPIQMMRDIIDNE 181 (182)
Q Consensus 159 ~~~~~~~-~g~~~~~~l~~~l~~~ 181 (182)
. ....| .|..+.+.|.+||+..
T Consensus 78 e-~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 78 E-EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred C-CCcccCCCCCCHHHHHHHHHHh
Confidence 2 23456 6778999999999753
No 215
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.21 E-value=0.058 Score=40.83 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=72.3
Q ss_pred ceeeecCHHHHHHHHH-cCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEE
Q 041160 74 YLVKKKTAQEIQELVR-GERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLF 152 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~ 152 (182)
..|..+++.+|...+. ...|-.|||..|...-+.|+-+...++.++..|+ .+.|+++-.+.. ..-|--...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeEE
Confidence 3588889999887664 4458888999999999999999999999999998 577777643321 2225557889999
Q ss_pred EEcCCCCeeeeee------cCC-CCHHHHHHHHH
Q 041160 153 FISPDPNKDAIRT------EGL-IPIQMMRDIID 179 (182)
Q Consensus 153 ~~~~~g~~~~~~~------~g~-~~~~~l~~~l~ 179 (182)
+|..|. ....+ .|. .+.+++..+|-
T Consensus 167 VY~~G~--lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 167 VYHHGA--LKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred Eeecch--HHhheehhhhhcCCcCCHHHHHHHHH
Confidence 998762 22222 222 45677776664
No 216
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.16 E-value=0.013 Score=43.58 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=37.3
Q ss_pred cCCCCcEEEEEEcCCC-hhHHHhHHHHHHHHHHhcC---CcEEEEEECCCc
Q 041160 90 GERNVPIIIDFYATWC-GPCILMAQEIELLAVEYES---SAMIVKVDTDDE 136 (182)
Q Consensus 90 ~~~~k~vvv~F~a~wC-~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~ 136 (182)
+.+||+++|.|.-+-| .-|-.....+.++.++++. ++.++.|.+|..
T Consensus 49 ~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 49 DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 3459999999999999 5799888888888887653 588888888854
No 217
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.15 E-value=0.03 Score=42.77 Aligned_cols=101 Identities=14% Similarity=0.215 Sum_probs=76.0
Q ss_pred eeecCHHHHHHHHHcC-CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEE
Q 041160 76 VKKKTAQEIQELVRGE-RNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 154 (182)
...-++..|.+.+... +...++|..|-+.-.-|-.+...+.=|+.+|+ .+.|.++-.. +-...++|...++|++++|
T Consensus 141 ~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss-~~gas~~F~~n~lP~LliY 218 (273)
T KOG3171|consen 141 YELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSS-NTGASDRFSLNVLPTLLIY 218 (273)
T ss_pred EEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeec-cccchhhhcccCCceEEEe
Confidence 4445778999988754 56677889999999999999999999999998 7889988643 4456788999999999999
Q ss_pred cCCCCeeeeeec-------CCCCHHHHHHHHHh
Q 041160 155 SPDPNKDAIRTE-------GLIPIQMMRDIIDN 180 (182)
Q Consensus 155 ~~~g~~~~~~~~-------g~~~~~~l~~~l~~ 180 (182)
++| + .+..+. ......++..||++
T Consensus 219 kgG-e-LIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 219 KGG-E-LIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred eCC-c-hhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 865 3 222221 22345567777765
No 218
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.13 E-value=0.13 Score=38.09 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=28.3
Q ss_pred EEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEE
Q 041160 96 IIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKV 131 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v 131 (182)
.|..|+..-||+|-...+.+.++.+.+++ ++.+.-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 36788899999999999999999999943 3444333
No 219
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.096 Score=39.45 Aligned_cols=91 Identities=22% Similarity=0.218 Sum_probs=66.2
Q ss_pred cCCCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC----------------------------cHHH
Q 041160 90 GERNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD----------------------------EYEF 139 (182)
Q Consensus 90 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------------~~~~ 139 (182)
+..+|.+|+.|| ++--.-|-.+...+.+.+.++.. ++.++.+++|. +.++
T Consensus 30 d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~v 109 (194)
T COG0450 30 DYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEI 109 (194)
T ss_pred hhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhH
Confidence 334788888888 67788888899999999988875 58888888764 4578
Q ss_pred HHhcCCC------cccEEEEEcCCCCeeeeee---cCCCCHHHHHHHHHh
Q 041160 140 ARDMQVR------GLPTLFFISPDPNKDAIRT---EGLIPIQMMRDIIDN 180 (182)
Q Consensus 140 ~~~~~i~------~~Pt~~~~~~~g~~~~~~~---~g~~~~~~l~~~l~~ 180 (182)
++.||+. .+=.+++++++|......+ .=.+..+++...|+.
T Consensus 110 s~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idA 159 (194)
T COG0450 110 ARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA 159 (194)
T ss_pred HHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence 8889874 3556789999986533222 213677887777654
No 220
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.91 E-value=0.056 Score=35.43 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=60.6
Q ss_pred CcEEEEEEcCCChhHHHhHHHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCC
Q 041160 94 VPIIIDFYATWCGPCILMAQEIELLAVEYE-SSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIP 170 (182)
Q Consensus 94 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~ 170 (182)
+.++=.|.|.--+.++.....+.++.+++- +.+.+=-||+.+++++++.++|.++||++=..+. ...+..|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~---P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP---PVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC---Ccceeecccc
Confidence 456667889999999999999999988664 4577888999999999999999999998877665 4556677655
No 221
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.049 Score=42.34 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=28.6
Q ss_pred HHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 138 EFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 138 ~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
.+.+.+|+.++||+++-+. .+.|..+.+++.+.|++.
T Consensus 206 ~~a~~~gv~gTPt~~v~~~-------~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK-------LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEECCe-------eecCCCCHHHHHHHHHHh
Confidence 4567799999999977532 457888889999888764
No 222
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.81 E-value=0.067 Score=36.16 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=62.4
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCC
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVEYE-SSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIP 170 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~ 170 (182)
++..++=.|.|.--+..+.....+.++.+++- +.+.+=-||+.+++++++.++|.++||++=..+. ...+..|..+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~---P~rriiGDls 80 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP---PVRKIIGDLS 80 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC---Ccceeecccc
Confidence 35667778889999999999999999988664 4577888999999999999999999998777665 4556677654
No 223
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.56 E-value=0.1 Score=33.02 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=52.1
Q ss_pred EEEEEEcCCChhHHHhHHHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCC
Q 041160 96 IIIDFYATWCGPCILMAQEIELLAVEYE-SSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPD 157 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~ 157 (182)
.+..|-+..-+..+.....+.++.+++. +.+.+=-||+.+++++++.++|.++||++=..+.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence 4556667777999999999999998875 4688999999999999999999999998765554
No 224
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.52 E-value=0.016 Score=39.25 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=45.8
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcCCCcccEEEEEcCCCCeeeeee-----cCC
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE----YEFARDMQVRGLPTLFFISPDPNKDAIRT-----EGL 168 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~-----~g~ 168 (182)
..|+.++|+.|++....|++. ++.|-.+|+.++ .++.+..+-.+.+.--+++..+.. ++- ...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~--~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTP--YRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCch--HHHcCCccccC
Confidence 568899999999987777663 455666666542 344444444444445555554321 111 234
Q ss_pred CCHHHHHHHHHh
Q 041160 169 IPIQMMRDIIDN 180 (182)
Q Consensus 169 ~~~~~l~~~l~~ 180 (182)
.+.+++.++|.+
T Consensus 74 ls~~e~~~~l~~ 85 (105)
T cd02977 74 LSDEEALELMAE 85 (105)
T ss_pred CCHHHHHHHHHh
Confidence 678888888765
No 225
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.38 E-value=0.016 Score=39.74 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=45.9
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcCCCcccEEEEEcCCCCeeeeeecC------
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY----EFARDMQVRGLPTLFFISPDPNKDAIRTEG------ 167 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g------ 167 (182)
..|+.++|+.|++....|++- ++.|-.+|+.+++ ++.+-.+..+.|..-+++..|. .++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~--~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK--SYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc--hHHhCCcccccc
Confidence 468899999999988777663 4666677765543 3444444445566666766653 222111
Q ss_pred CCCHHHHHHHHHh
Q 041160 168 LIPIQMMRDIIDN 180 (182)
Q Consensus 168 ~~~~~~l~~~l~~ 180 (182)
..+.+++.+.|.+
T Consensus 74 ~~s~~e~~~~l~~ 86 (111)
T cd03036 74 SLSEEEALELLSS 86 (111)
T ss_pred cCCHHHHHHHHHh
Confidence 2355667777654
No 226
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=95.14 E-value=0.19 Score=34.64 Aligned_cols=73 Identities=7% Similarity=0.144 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISP 156 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~ 156 (182)
+.++.+.+++.+..+.-+.+.|-.-=-+ .+.+..+.+.+.....-.- ..+.-++.+.++|+|+.+|++++.++
T Consensus 8 MP~~~L~~l~~~a~~~~~~~V~RG~~~g---~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 8 MPDASLRNLLKQAERAGVVVVFRGFPDG---SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CCHHHHHHHHHHHHhCCcEEEEECCCCC---CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 3566677766544333344444433333 4555555555554432111 33344688999999999999999987
No 227
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=95.14 E-value=0.12 Score=32.48 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=43.2
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRD 176 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~ 176 (182)
+..|+.++|+.|++..-.+.+..-. +.+..+|.....++ +.-+...+|+++.-+.++.. . ......|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~-----l~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-Q-----LVDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-E-----EEcHHHHHH
Confidence 4567889999999988666554322 23333333222333 34556789988654221111 1 135678888
Q ss_pred HHHhhC
Q 041160 177 IIDNEM 182 (182)
Q Consensus 177 ~l~~~l 182 (182)
+|++.|
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 887754
No 228
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.11 E-value=0.12 Score=37.44 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=35.4
Q ss_pred EEEEEcC------CChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHH----HHhcCC----CcccEEEEEc
Q 041160 97 IIDFYAT------WCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEF----ARDMQV----RGLPTLFFIS 155 (182)
Q Consensus 97 vv~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i----~~~Pt~~~~~ 155 (182)
|+.|+++ ||++|++....|+.+ +|.|-.+|++.+.++ .+.++- ..+|.+ |++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV-FI~ 67 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV-FVD 67 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE-EEC
Confidence 3456666 999999888888765 477888899877644 344444 567776 453
No 229
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.11 Score=38.22 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=43.2
Q ss_pred eeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECC
Q 041160 76 VKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTD 134 (182)
Q Consensus 76 v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 134 (182)
++.++++.+. +.+.+||+++|.=-|+-|+.-...-..|+.+.++|++ ...++..-|.
T Consensus 19 ~~d~~G~~v~--l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 19 AKDLDGEYVS--LSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred EecCCCCCcc--HHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 3333443333 5567799999999999999999888899999999976 3677777664
No 230
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.03 E-value=0.27 Score=42.76 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCee
Q 041160 82 QEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKD 161 (182)
Q Consensus 82 ~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~ 161 (182)
+++.+++.+-++ +|-+.++.+-|..|..+...++++++.-+ ++.+-..+.+ ...|++.+.+ +|...
T Consensus 8 ~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~-~~~~~ 73 (517)
T PRK15317 8 TQLKQYLELLER-PIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITR-PGEDT 73 (517)
T ss_pred HHHHHHHHhCCC-CEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEc-CCccc
Confidence 455566666645 45444445589999999999999997754 6666443321 3479998886 44445
Q ss_pred eeeecCCCCHHHHHHHHHhh
Q 041160 162 AIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 162 ~~~~~g~~~~~~l~~~l~~~ 181 (182)
.++|.|...-.++..||..+
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i 93 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLAL 93 (517)
T ss_pred eEEEEecCccHHHHHHHHHH
Confidence 68899988889998888754
No 231
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=94.95 E-value=0.042 Score=37.66 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=40.3
Q ss_pred HHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC
Q 041160 88 VRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD 135 (182)
Q Consensus 88 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 135 (182)
+++.+||+++|.=.|+-|+.-. ....|+++.++|++ ...++..-|++
T Consensus 16 l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 16 LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4567799999999999999999 88899999999985 47888887764
No 232
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.74 E-value=0.37 Score=41.86 Aligned_cols=88 Identities=8% Similarity=0.054 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCe
Q 041160 81 AQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNK 160 (182)
Q Consensus 81 ~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~ 160 (182)
.+++.+++.+-++.+.++.|.. -|..|..+...++++++.-+ ++.+...+.+. ...|++.+..+ |+.
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~-~~~ 73 (515)
T TIGR03140 7 LAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRD-GAD 73 (515)
T ss_pred HHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecC-Ccc
Confidence 3455566666545444555555 79999999999999987754 77775544332 34599988754 334
Q ss_pred eeeeecCCCCHHHHHHHHHhh
Q 041160 161 DAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 161 ~~~~~~g~~~~~~l~~~l~~~ 181 (182)
..++|.|...-.++..||..+
T Consensus 74 ~~i~f~g~P~g~Ef~s~i~~i 94 (515)
T TIGR03140 74 TGIRFAGIPGGHEFTSLVLAI 94 (515)
T ss_pred cceEEEecCCcHHHHHHHHHH
Confidence 568899988889998888754
No 233
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.51 E-value=0.12 Score=35.74 Aligned_cols=75 Identities=7% Similarity=-0.005 Sum_probs=43.3
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHH----HHHhcCCCcccEEEEEcCCCCeeeeeec------C
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYE----FARDMQVRGLPTLFFISPDPNKDAIRTE------G 167 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~~~Pt~~~~~~~g~~~~~~~~------g 167 (182)
..|+.++|+.|++....+++- ++.+-.+|+.+++. +.+-+...+...--+++..|. .++.. .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~--~~k~l~~~~~~~ 73 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQ--SYRALNTSNTFL 73 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCc--chhhCCchhhcc
Confidence 468899999999988877762 46777888776542 222222222222234544443 22221 2
Q ss_pred CCCHHHHHHHHHh
Q 041160 168 LIPIQMMRDIIDN 180 (182)
Q Consensus 168 ~~~~~~l~~~l~~ 180 (182)
..+.++++++|.+
T Consensus 74 ~ls~~e~~~~i~~ 86 (117)
T TIGR01617 74 DLSDKEALELLAE 86 (117)
T ss_pred cCCHHHHHHHHHh
Confidence 3566777777754
No 234
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.33 E-value=1.1 Score=30.62 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=74.3
Q ss_pred eecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC--CcEEEEEECCCcHHHHH----hcCCC-ccc
Q 041160 77 KKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES--SAMIVKVDTDDEYEFAR----DMQVR-GLP 149 (182)
Q Consensus 77 ~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~----~~~i~-~~P 149 (182)
.++..+++-+.-...-+...++-|--.--+.-..+.+.++++|+++.. +..|+.||-|+-+-+.. .|+|. .=|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 345555555555443344567778888899999999999999999975 58999999999876644 45654 248
Q ss_pred EEEEEcCCCCeee-eeec---CCCCHHHHHHHHHhhC
Q 041160 150 TLFFISPDPNKDA-IRTE---GLIPIQMMRDIIDNEM 182 (182)
Q Consensus 150 t~~~~~~~g~~~~-~~~~---g~~~~~~l~~~l~~~l 182 (182)
.+-+++-....-+ .... ...+.++|.+||++.|
T Consensus 84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 8877765432211 2222 3467999999999865
No 235
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.70 E-value=0.49 Score=33.50 Aligned_cols=46 Identities=7% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCcHHHHHhcCCCcccEEEEEcCCC---------CeeeeeecCCCCHHHHHHHHH
Q 041160 134 DDEYEFARDMQVRGLPTLFFISPDP---------NKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 134 d~~~~~~~~~~i~~~Pt~~~~~~~g---------~~~~~~~~g~~~~~~l~~~l~ 179 (182)
.-++.+.++|+|+.+|++++..++. ........|..+.+.-.+.+.
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 3478999999999999999998763 012445567777777666665
No 236
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=93.56 E-value=1.1 Score=28.10 Aligned_cols=71 Identities=8% Similarity=-0.008 Sum_probs=41.7
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc----HHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE----YEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQ 172 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~ 172 (182)
+..++.++|++|++..-.+++.. +.+-.++++.. .++....+-..+|+++. +++| . . .....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~-~-~-----l~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTG-V-Q-----MFESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCC-e-E-----EEcHH
Confidence 34567789999998777666653 32333444332 34444445678998743 2233 1 2 13567
Q ss_pred HHHHHHHhh
Q 041160 173 MMRDIIDNE 181 (182)
Q Consensus 173 ~l~~~l~~~ 181 (182)
.|.++|++.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 888888764
No 237
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.33 E-value=0.27 Score=30.44 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=35.1
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCcccEEE
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD-EYEFARDMQVRGLPTLF 152 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~~~~~~i~~~Pt~~ 152 (182)
+.|+..||++|++..-.+++... .+.+..+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 45788999999988766665432 35556666543 35666667778899984
No 238
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.14 E-value=0.12 Score=35.66 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=42.5
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH----HHHHhcCCCcccEEEEEcCCCCeeeeeec----CC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY----EFARDMQVRGLPTLFFISPDPNKDAIRTE----GL 168 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~----g~ 168 (182)
+..|+.++|+.|++....|++. ++.+-.+|+.+++ ++.+-+...+.|.--+++.+|. .++-. ..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~--~~k~l~~~~~~ 73 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSK--AFKNLNIDIDE 73 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcH--HHHHcCCCccc
Confidence 4568889999999888777663 3566677765542 3333333333344445555543 22221 13
Q ss_pred CCHHHHHHHHHh
Q 041160 169 IPIQMMRDIIDN 180 (182)
Q Consensus 169 ~~~~~l~~~l~~ 180 (182)
.+.+++.++|.+
T Consensus 74 ls~~e~i~~l~~ 85 (115)
T cd03032 74 LSLSELIRLISE 85 (115)
T ss_pred CCHHHHHHHHHh
Confidence 455666666643
No 239
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=2.1 Score=31.10 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=51.3
Q ss_pred cCCCCCCCCCCCCCccccCceeeecCHHHHHHHHHcCCCCcEEEE-EEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEEC
Q 041160 55 THPRKFLCKPPQGKYVREDYLVKKKTAQEIQELVRGERNVPIIID-FYATWCGPCILMAQEIELLAVEYESSAMIVKVDT 133 (182)
Q Consensus 55 ~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~k~vvv~-F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 133 (182)
.+|.......++.....+++.+...+.+++. +.+..||..+|. |=+-.-|-|-..-..|++.+.++.+ ..++.|+.
T Consensus 8 gnpv~l~g~~~~vGd~ap~ftl~~~dL~~v~--l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~ 84 (158)
T COG2077 8 GNPVTLKGNEPQVGDKAPDFTLVGKDLNDVS--LADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISM 84 (158)
T ss_pred CCeEEecCCCCccCCcCCceEEEcCccccee--ccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeC
Confidence 3444444455555666677777655555544 334456555555 5577889999999999999999874 66777766
Q ss_pred C
Q 041160 134 D 134 (182)
Q Consensus 134 d 134 (182)
|
T Consensus 85 D 85 (158)
T COG2077 85 D 85 (158)
T ss_pred C
Confidence 5
No 240
>PRK12559 transcriptional regulator Spx; Provisional
Probab=92.75 E-value=0.17 Score=35.88 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=23.3
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD 135 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 135 (182)
+..|+.++|+.|++....|++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeC
Confidence 5678899999999877666553 35555566544
No 241
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=92.59 E-value=0.57 Score=36.94 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=55.1
Q ss_pred CCCcEEEEEEcCCChh-HHHhHHHHHHHHHHhcC----Cc--EEEEEECCCc--------------------------HH
Q 041160 92 RNVPIIIDFYATWCGP-CILMAQEIELLAVEYES----SA--MIVKVDTDDE--------------------------YE 138 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v--~~~~vd~d~~--------------------------~~ 138 (182)
.||.++++|.=+-||. |-.+...+.++.++... .+ .|+.+|-+.+ .+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 3999999999999986 87777777777766543 22 3445543221 14
Q ss_pred HHHhcCC---------------CcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 139 FARDMQV---------------RGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 139 ~~~~~~i---------------~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+|++|.| +-.=.+.+++++|. -+..+....+++++.+-|.++
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~-Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE-FVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc-eehhhcccCCHHHHHHHHHHH
Confidence 5555544 11223567788874 233333357888888887664
No 242
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.14 E-value=0.26 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=25.8
Q ss_pred CcEEEEEEcCCChhHHHhHHHHHHHHHHhc
Q 041160 94 VPIIIDFYATWCGPCILMAQEIELLAVEYE 123 (182)
Q Consensus 94 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~ 123 (182)
|.++|.|..|.|+-|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 458999999999999999999988877664
No 243
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=1 Score=33.32 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=39.9
Q ss_pred cccCceeeecCHHHHHHHHHcCC-CCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC
Q 041160 70 VREDYLVKKKTAQEIQELVRGER-NVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD 135 (182)
Q Consensus 70 ~~~~~~v~~~~~~~~~~~l~~~~-~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 135 (182)
+.|++.+..-++..+. |.+.. ++++|++|| +.--|-|.+..--|+.=+++++. ...++.++.|.
T Consensus 68 ~iPD~tL~dedg~sis--Lkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~ 134 (211)
T KOG0855|consen 68 AIPDFTLKDEDGKSIS--LKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDD 134 (211)
T ss_pred cCCCcccccCCCCeee--eeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCc
Confidence 4456666655555444 32222 458888888 56677787777777666666654 46677777654
No 244
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=92.04 E-value=2.2 Score=36.07 Aligned_cols=88 Identities=9% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCcEEEEEEcCCChhHHHhHH-HH-HH-HHHHhcCCcEEEEEECCC--cHHHHHhcCCCcccEEEEEcCCCCeeeeeecC
Q 041160 93 NVPIIIDFYATWCGPCILMAQ-EI-EL-LAVEYESSAMIVKVDTDD--EYEFARDMQVRGLPTLFFISPDPNKDAIRTEG 167 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p-~l-~~-l~~~~~~~v~~~~vd~d~--~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g 167 (182)
++.++|.|-+.......++.. .+ .. ..+.....++-++|+... ...+..-|.+..+|++++|...|. ......|
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGt-pLevitg 96 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGT-PLEVITG 96 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCc-eeEEeec
Confidence 566777777777777766652 22 22 222222235555666544 346788899999999999998885 5677889
Q ss_pred CCCHHHHHHHHHhh
Q 041160 168 LIPIQMMRDIIDNE 181 (182)
Q Consensus 168 ~~~~~~l~~~l~~~ 181 (182)
..+.++|..-|++.
T Consensus 97 ~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 97 FVTADELASSIEKV 110 (506)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999988874
No 245
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.88 E-value=0.36 Score=34.12 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=24.8
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY 137 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 137 (182)
+..|+.+||+.|++....|++. ++.|-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4578899999999877666543 4566667765543
No 246
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.52 E-value=0.37 Score=37.32 Aligned_cols=39 Identities=26% Similarity=0.559 Sum_probs=31.1
Q ss_pred HHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 138 EFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 138 ~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
..++++||+++|++++ + + .+...|..+.+.+.+.|++++
T Consensus 175 ~~A~e~gI~gVP~fv~-d-~----~~~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-D-G----KYAVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HHHHHCCCccCceEEE-c-C----cEeecCCCCHHHHHHHHHHHH
Confidence 4578899999999988 2 2 234579999999999998763
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.29 E-value=1.3 Score=26.99 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=34.8
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCcccEEEE
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD----DEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d----~~~~~~~~~~i~~~Pt~~~ 153 (182)
..|+.++|++|++..-.+++..- ......+|.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999998888776632 2344455542 2345666666778999864
No 248
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=90.80 E-value=0.37 Score=32.72 Aligned_cols=71 Identities=7% Similarity=-0.016 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcCCCcccEEEEEcCCCCeeeeeec---
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-------EFARDMQVRGLPTLFFISPDPNKDAIRTE--- 166 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~--- 166 (182)
+..|+.+||+.|++....|++- ++.+-.+|+.+++ .+.+++|+ --+++..|. .++--
T Consensus 1 i~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p~s~~eL~~~l~~~g~-----~~li~~~~~--~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDGLDAATLERWLAKVGW-----ETLLNKRGT--TWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCCCCHHHHHHHHHHhCh-----HHHHccCch--HHHhCChh
Confidence 3568899999999988777654 3556666665443 45555552 334444432 22211
Q ss_pred --CCCCHHHHHHHHHh
Q 041160 167 --GLIPIQMMRDIIDN 180 (182)
Q Consensus 167 --g~~~~~~l~~~l~~ 180 (182)
...+.+++.+.|.+
T Consensus 68 ~~~~~s~~e~~~~l~~ 83 (105)
T cd03035 68 QKAALDAAKAIALMLE 83 (105)
T ss_pred hhccCCHHHHHHHHHh
Confidence 22455667766654
No 249
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=2.9 Score=31.18 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=56.7
Q ss_pred HHcCCCCcEEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECC----------------------------CcH
Q 041160 88 VRGERNVPIIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTD----------------------------DEY 137 (182)
Q Consensus 88 l~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d----------------------------~~~ 137 (182)
|...+||.+++.|| -++---|-.+.-.+...+.++.. +-.++.+++| .+.
T Consensus 28 L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~ 107 (196)
T KOG0852|consen 28 LSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNH 107 (196)
T ss_pred ehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccch
Confidence 45567999999998 45544555566666666666654 3445555554 356
Q ss_pred HHHHhcCCC------cccEEEEEcCCCCeeeeeecC---CCCHHHHHHHHH
Q 041160 138 EFARDMQVR------GLPTLFFISPDPNKDAIRTEG---LIPIQMMRDIID 179 (182)
Q Consensus 138 ~~~~~~~i~------~~Pt~~~~~~~g~~~~~~~~g---~~~~~~l~~~l~ 179 (182)
++++.|||- ++=.+++++.+|....+..+. .++.++....++
T Consensus 108 ~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvq 158 (196)
T KOG0852|consen 108 EISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQ 158 (196)
T ss_pred hhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHH
Confidence 889999973 345667777776443322222 256666665554
No 250
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=0.77 Score=29.20 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=35.3
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc--------------HH--HHHhcCCCcccEEEEEcC
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE--------------YE--FARDMQVRGLPTLFFISP 156 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--------------~~--~~~~~~i~~~Pt~~~~~~ 156 (182)
+.|++.-||.|-.+...++++. +.+=.|++.+. ++ -.+.+|--|+|.+..=++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~ 73 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDG 73 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCC
Confidence 6799999999987766666653 34444555432 22 255677889999876543
No 251
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.08 E-value=4.3 Score=27.44 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=59.6
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCC-
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDP- 158 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g- 158 (182)
+.++++..+... ++.+||-|+..--+ .....+.++|+.+.++..|+... +.++..++++. -|.+++|.+..
T Consensus 7 s~~ele~f~~~~-~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~ 78 (107)
T cd03068 7 TLKQVQEFLRDG-DDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKF 78 (107)
T ss_pred CHHHHHHHHhcC-CCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHH
Confidence 667788777553 24566666655444 35677889999997778775443 34777888875 46677774321
Q ss_pred ----CeeeeeecCC-CCHHH-HHHHHHhh
Q 041160 159 ----NKDAIRTEGL-IPIQM-MRDIIDNE 181 (182)
Q Consensus 159 ----~~~~~~~~g~-~~~~~-l~~~l~~~ 181 (182)
......|.|. .+.+. |.+||+++
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 0123345665 45545 99999864
No 252
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=90.01 E-value=0.64 Score=36.14 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=39.1
Q ss_pred HHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC----CcEEEEEECC
Q 041160 88 VRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES----SAMIVKVDTD 134 (182)
Q Consensus 88 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----~v~~~~vd~d 134 (182)
+.+..|+++||-+-..+|..|......++.|..++.. +|.|+.|+--
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4456699999999999999999999999999877653 5888888853
No 253
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.92 E-value=0.6 Score=27.69 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=33.0
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH--HHHHhcCCCcccEEE
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY--EFARDMQVRGLPTLF 152 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~~~~~~i~~~Pt~~ 152 (182)
..|+.++|+.|++..-.++...- .+....++.+... ++.+..+-..+|++.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~ 54 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLE 54 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEE
Confidence 35778999999987777766532 3445555544332 355666777899775
No 254
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=89.89 E-value=0.15 Score=33.06 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=45.4
Q ss_pred EEcCCChhHHHhHHHHHHHHHHhc-CCcEEEEEECCCcHHHHHhcCCCcccEEEEEc
Q 041160 100 FYATWCGPCILMAQEIELLAVEYE-SSAMIVKVDTDDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 100 F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
|-+.--+..+.....++.+.+.+- +.+.+--||+.+++++++.++|-++||++-..
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~ 59 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIKES 59 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHTTS
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEeecc
Confidence 445555667788888888888754 46889999999999999999999999986443
No 255
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=89.58 E-value=3 Score=25.92 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=46.6
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHH
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD-EYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDI 177 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~ 177 (182)
.++.++|+.|++..-.++...- .+.+..++..+ ..++.+...-..+|++. .+ | . .. .+...|.++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~-~~-g-~--~l-----~dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV-DD-G-E--VL-----TDSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE-ET-T-E--EE-----ESHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE-EC-C-E--EE-----eCHHHHHHH
Confidence 3678999999987766655421 35566666655 35677777788999997 54 3 2 22 256788888
Q ss_pred HHhh
Q 041160 178 IDNE 181 (182)
Q Consensus 178 l~~~ 181 (182)
|++.
T Consensus 67 L~~~ 70 (75)
T PF13417_consen 67 LEER 70 (75)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 256
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=89.27 E-value=0.66 Score=28.51 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=38.6
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
.++.++|++|++..-.+....- .+..+.++.++.....+..+-..+|++. .+ +|. . ......|.++|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~-~~-~~~--~-----l~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILE-KD-DGS--F-----MAESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEE-eC-CCe--E-----eehHHHHHHHH
Confidence 4678899999987776665422 2334445544433444445556788874 33 232 1 13456676666
Q ss_pred H
Q 041160 179 D 179 (182)
Q Consensus 179 ~ 179 (182)
+
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 5
No 257
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=88.98 E-value=0.57 Score=33.21 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=23.4
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE 136 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 136 (182)
+..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 4567889999999877655542 466666666543
No 258
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=88.79 E-value=2.4 Score=34.38 Aligned_cols=120 Identities=9% Similarity=0.106 Sum_probs=67.4
Q ss_pred cccccccCCCCccccccccccCCCCCCCCCCCCCccccCceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHH
Q 041160 35 NNSLFSFSATNTKDGLFSLSTHPRKFLCKPPQGKYVREDYLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQE 114 (182)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~ 114 (182)
+...++|.|++.++.+.+++..-.. ..+..++.++....-.+.+.++.+|+|.+.-- |.
T Consensus 109 gd~a~dYRG~R~Kd~iieFAhR~a~--------------aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~-------PL 167 (468)
T KOG4277|consen 109 GDHAIDYRGGREKDAIIEFAHRCAA--------------AIIEPINENQIEFEHLQARHQPFFVFFGTGEG-------PL 167 (468)
T ss_pred CCeeeecCCCccHHHHHHHHHhccc--------------ceeeecChhHHHHHHHhhccCceEEEEeCCCC-------cH
Confidence 3457899999999999888763321 13455666554433334446778887775433 34
Q ss_pred HHHHHHHhcCCcEEEEEECCCcHHHHHh-cCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 115 IELLAVEYESSAMIVKVDTDDEYEFARD-MQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 115 l~~l~~~~~~~v~~~~vd~d~~~~~~~~-~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
++++.+....++.+...= ....+++-. ....-.|.+.+|+.+. -.+.. .-+.+++.+||++
T Consensus 168 ~d~fidAASe~~~~a~Ff-SaseeVaPe~~~~kempaV~VFKDet--f~i~d--e~dd~dLseWinR 229 (468)
T KOG4277|consen 168 FDAFIDAASEKFSVARFF-SASEEVAPEENDAKEMPAVAVFKDET--FEIED--EGDDEDLSEWINR 229 (468)
T ss_pred HHHHHHHhhhheeeeeee-ccccccCCcccchhhccceEEEccce--eEEEe--cCchhHHHHHHhH
Confidence 444444443333332221 111122222 2345679999998752 22233 3477899999875
No 259
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=88.72 E-value=2 Score=33.88 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=40.3
Q ss_pred CCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcC
Q 041160 91 ERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISP 156 (182)
Q Consensus 91 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~ 156 (182)
..||+.+++..+.|||.|-.+.=.+-....+|+ ++.+...--|. .-.-..+|+++|..-
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG-n~~l~~~~S~~------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFG-NFSLEYHYSDP------YDNYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcC-CeeeEEeecCc------ccCCCCCCeEEEecC
Confidence 349999999999999999988777766666776 34433332222 011247899888765
No 260
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=88.28 E-value=7.4 Score=27.75 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=60.3
Q ss_pred CCcEEEEEEcCCC----hhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH------------------HHHHhcCCCcccE
Q 041160 93 NVPIIIDFYATWC----GPCILMAQEIELLAVEYESSAMIVKVDTDDEY------------------EFARDMQVRGLPT 150 (182)
Q Consensus 93 ~k~vvv~F~a~wC----~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------------------~~~~~~~i~~~Pt 150 (182)
.|+.+|+..++-- ..|+...-. +++.+-.+++..+..-|+.... ...+.++...+|.
T Consensus 21 ~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP~ 99 (136)
T cd02990 21 RKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLPA 99 (136)
T ss_pred cceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCCe
Confidence 7899999998775 445544210 3333333456788888876643 2456678999999
Q ss_pred EEEEcCCCC--eeeeeecCCCCHHHHHHHHHh
Q 041160 151 LFFISPDPN--KDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 151 ~~~~~~~g~--~~~~~~~g~~~~~~l~~~l~~ 180 (182)
+.++-...+ .+..+..|..+.+++.+.|..
T Consensus 100 ~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~ 131 (136)
T cd02990 100 ILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE 131 (136)
T ss_pred EEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence 998865432 467788999999999988765
No 261
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=3.9 Score=34.16 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=65.9
Q ss_pred HHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeee
Q 041160 83 EIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDA 162 (182)
Q Consensus 83 ~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~ 162 (182)
++-+-++...+..-+=.|++-.|..|-.....++-++-..+ ++.-..||-.--++-.+.-+|.++||+++- | + .
T Consensus 106 ~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp-~I~H~~IdGa~Fq~Evear~IMaVPtvfln--G-e-~- 179 (520)
T COG3634 106 DVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP-RIKHTAIDGALFQDEVEARNIMAVPTVFLN--G-E-E- 179 (520)
T ss_pred HHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC-CceeEEecchhhHhHHHhccceecceEEEc--c-h-h-
Confidence 34444455556666777889999999988888888877665 788899998877777888899999998553 3 1 1
Q ss_pred eeecCCCCHHHHHHHHH
Q 041160 163 IRTEGLIPIQMMRDIID 179 (182)
Q Consensus 163 ~~~~g~~~~~~l~~~l~ 179 (182)
...|.++.++|.+-|.
T Consensus 180 -fg~GRmtleeilaki~ 195 (520)
T COG3634 180 -FGQGRMTLEEILAKID 195 (520)
T ss_pred -hcccceeHHHHHHHhc
Confidence 2356777777776553
No 262
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=86.90 E-value=1.5 Score=26.88 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=34.5
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCcccEEE
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD----EYEFARDMQVRGLPTLF 152 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~i~~~Pt~~ 152 (182)
..|+.++|+.|++..-.+++..- .+....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 45788999999977776666532 34555666432 35666666677899995
No 263
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=86.89 E-value=8.7 Score=27.55 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=50.4
Q ss_pred EEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCC----cccEEEEEcCCCCeeeeeecCCCCH
Q 041160 96 IIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVR----GLPTLFFISPDPNKDAIRTEGLIPI 171 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~----~~Pt~~~~~~~g~~~~~~~~g~~~~ 171 (182)
-++.++.+.|+=|..-...++ . ..+.+-.+..++-..+.++++|. +=- +.+++ | +...|-.+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk----~--~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCH-T~VI~-G-----y~vEGHVPa 93 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK----A--NGFEVKVVETDDFLALKRRLGIPYEMQSCH-TAVIN-G-----YYVEGHVPA 93 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH----h--CCcEEEEeecCcHHHHHHhcCCChhhcccc-EEEEc-C-----EEEeccCCH
Confidence 478899999999986555444 2 24667777777777888888873 333 34553 2 244677899
Q ss_pred HHHHHHHHh
Q 041160 172 QMMRDIIDN 180 (182)
Q Consensus 172 ~~l~~~l~~ 180 (182)
+.+..+|++
T Consensus 94 ~aI~~ll~~ 102 (149)
T COG3019 94 EAIARLLAE 102 (149)
T ss_pred HHHHHHHhC
Confidence 999998875
No 264
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=86.16 E-value=15 Score=28.98 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=35.5
Q ss_pred HHHcCCCCcEEEEEEcCC------ChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHh----cCCCc
Q 041160 87 LVRGERNVPIIIDFYATW------CGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARD----MQVRG 147 (182)
Q Consensus 87 ~l~~~~~k~vvv~F~a~w------C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~----~~i~~ 147 (182)
+|++- +++|-|.+|.+- -..=+.....|++++...++++.+-.+|-+.+++..++ +||..
T Consensus 19 ~L~~L-~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 19 VLKSL-DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHhC-CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 34444 345655555443 33333444444444444455899999999877766655 88776
No 265
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=85.93 E-value=1.4 Score=26.90 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=41.5
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHH
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE-YEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRD 176 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~ 176 (182)
..|+.++|+.|++..-.+++..- ......+|.... +++.+......+|++. . +| ... .....|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~-~~-~~l------~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--D-RD-LVL------YESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--E-CC-EEE------EcHHHHHH
Confidence 45778999999988777655432 234444554433 4555556667899763 3 32 111 34567777
Q ss_pred HHHh
Q 041160 177 IIDN 180 (182)
Q Consensus 177 ~l~~ 180 (182)
+|++
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7764
No 266
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.12 E-value=1.9 Score=32.68 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHHhcCCCcccEEEEEcCCCCeeeeeecC--CCCHHHHHHHHHhh
Q 041160 137 YEFARDMQVRGLPTLFFISPDPNKDAIRTEG--LIPIQMMRDIIDNE 181 (182)
Q Consensus 137 ~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g--~~~~~~l~~~l~~~ 181 (182)
.-+++++++.++||+++-++|. ...-..| ..+.+.+..++.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~--~~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGT--MYVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCc--eEeccCCcccCCcHHHHHHHHHH
Confidence 3578899999999999999663 2333344 45678888888764
No 267
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=82.35 E-value=2.1 Score=31.61 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=25.9
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCc
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSA 126 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v 126 (182)
|.+|+-..||.|-...+.++++.+++++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence 667889999999999999999999985333
No 268
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=81.92 E-value=1.9 Score=32.13 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=28.3
Q ss_pred cHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 136 EYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 136 ~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
+.+.+.+.||.++||+++ +| + +...|..+.+.+.+.|+
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g-~---~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NG-K---YAVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CC-e---EeecCCCCHHHHHHHhC
Confidence 345677899999999988 23 1 23578899999988763
No 269
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=81.73 E-value=4.3 Score=26.21 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=34.6
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCCCcccEEEE
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE-YEFARDMQVRGLPTLFF 153 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~i~~~Pt~~~ 153 (182)
+..|+...|++|++..-.+++..- .+.+..+|.... .++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 555678889999977666555421 355566665543 34666666778999863
No 270
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=81.61 E-value=2.3 Score=28.84 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=36.1
Q ss_pred EEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCC--cccEEEEEcCCC
Q 041160 100 FYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVR--GLPTLFFISPDP 158 (182)
Q Consensus 100 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~--~~Pt~~~~~~~g 158 (182)
||-.+|+.|......+.+.- -.+.+.++.+.-+...++.+.++++ ..-+.+.+..+|
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 60 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDG 60 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCC
Confidence 78899999999988888772 1224555555434555566777765 345555543344
No 271
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=81.05 E-value=3.1 Score=26.69 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCe-eeeeecCCCCHHHHHHHHHhh
Q 041160 147 GLPTLFFISPDPNK-DAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~ 181 (182)
.-|++++++.+|+. ..+...+ ++.+++.++|++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~-w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEK-WKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SS-SSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEccc-CCHHHHHHHHHHh
Confidence 56999999988764 4555544 7999999999875
No 272
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=80.33 E-value=20 Score=26.23 Aligned_cols=87 Identities=13% Similarity=0.146 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCCChhHHHhHHHHHHHHHH-hcC-CcE-EEEEECCC-----------------------------cHHH
Q 041160 92 RNVPIIIDFYATWCGPCILMAQEIELLAVE-YES-SAM-IVKVDTDD-----------------------------EYEF 139 (182)
Q Consensus 92 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~-~~~-~v~-~~~vd~d~-----------------------------~~~~ 139 (182)
.||+-+|..-|-.-..=....|.++.+.+. ++. ++. ..-||.|. +..+
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 477777766666666666666777777665 443 233 33344432 2223
Q ss_pred HHhcCCCc-ccEEEEEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 140 ARDMQVRG-LPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 140 ~~~~~i~~-~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
...+++.. -=++++++++|+ +.+...|.++.+++.+.|+
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~-V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGK-VQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred eccccCCCCCceEEEEcCCcc-EEEEECCCCCHHHHHHHHH
Confidence 33344432 246788888875 6777889999988887764
No 273
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=77.62 E-value=5.8 Score=30.31 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=30.1
Q ss_pred cHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 136 EYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 136 ~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
++.+.++|+|..+|++++....+ .....|..+.+.-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~---yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQG---YDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCC---CCEEEecccHHHHHHHHH
Confidence 68899999999999999986542 345567777665555443
No 274
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=76.68 E-value=22 Score=24.51 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=54.1
Q ss_pred EEEEEE-cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECC-Cc-----------HHHHHhcCCC-cccEEEEEcCCCCe
Q 041160 96 IIIDFY-ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTD-DE-----------YEFARDMQVR-GLPTLFFISPDPNK 160 (182)
Q Consensus 96 vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~-----------~~~~~~~~i~-~~Pt~~~~~~~g~~ 160 (182)
++|.|. +.--+.=+.....+.+-...+.. ++.++.+--+ .. ..+.++|++. +.-+++++.++|.
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~- 90 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGG- 90 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCc-
Confidence 444454 33455556666666664445544 4665555222 22 2788889864 2357788888876
Q ss_pred eeeeecCCCCHHHHHHHHHhh
Q 041160 161 DAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 161 ~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+..++.+..+.++|-+.|+.+
T Consensus 91 vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 VKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEecCCCCCHHHHHHHHhCC
Confidence 455788889999999998764
No 275
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=71.12 E-value=31 Score=26.58 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=42.7
Q ss_pred CChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 104 WCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 104 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
.|+.|+++.-.+. .+.. ...+-.||....++-....--.+=|-++.++.+ +..+.+.|.++|++-
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~---------~~tDs~~Ie~~Lee~ 84 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEK---------WVTDSDKIEEFLEEK 84 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeCCc---------eeccHHHHHHHHHHh
Confidence 5888887776666 2222 577889999988877766655555556666543 124567777777654
No 276
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=71.02 E-value=4.5 Score=27.69 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=41.4
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcCCCcccE-EEEEcCCCCeeeeeecC--
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-------EFARDMQVRGLPT-LFFISPDPNKDAIRTEG-- 167 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~~~~i~~~Pt-~~~~~~~g~~~~~~~~g-- 167 (182)
..|+.+.|..||+....+++- ++.+..+|+-+++ .+.+..|+ +. --+++..+. .++..|
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~p~t~~el~~~l~~~g~---~~~~~lin~~~~--~~~~l~~~ 70 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKNPPTKSELEAIFAKLGL---TVAREMIRTKEA--LYKELGLS 70 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCCCcCHHHHHHHHHHcCC---chHHHHHhcCCc--HHHHcCCC
Confidence 468899999999988777663 4556667765432 45555553 22 124544432 222111
Q ss_pred --CCCHHHHHHHHHh
Q 041160 168 --LIPIQMMRDIIDN 180 (182)
Q Consensus 168 --~~~~~~l~~~l~~ 180 (182)
..+.+++.+.|.+
T Consensus 71 ~~~ls~~e~i~~l~~ 85 (114)
T TIGR00014 71 DPNLSDQELLDAMVA 85 (114)
T ss_pred ccCCCHHHHHHHHHH
Confidence 3466667776654
No 277
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=70.55 E-value=6 Score=29.05 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 137 YEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 137 ~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
.+.+.++||.++|++++ +| + .+.|....+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g-~----~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DG-E----MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CC-e----eecccccHHHHHHHh
Confidence 35677899999999987 23 1 345777777777665
No 278
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=70.51 E-value=4.3 Score=27.71 Aligned_cols=72 Identities=7% Similarity=0.011 Sum_probs=39.5
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcCCCcccEEEEEcCCCCeeeeee----c
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-------EFARDMQVRGLPTLFFISPDPNKDAIRT----E 166 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~~~~i~~~Pt~~~~~~~g~~~~~~~----~ 166 (182)
..|+.+-|+.||+....+++- ++.+..+|+-+.+ .+.++.+. +.--+++..|. .++- .
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~~~t~~el~~~l~~~~~---~~~~lin~~~~--~y~~l~~~~ 70 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKTPPTAAELRELLAKLGI---SPRDLLRTKEA--PYKELGLAD 70 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccCCcCHHHHHHHHHHcCC---CHHHHHhcCCc--hHHHcCCCc
Confidence 468899999999987666543 3556666664432 44555542 22234444432 1111 1
Q ss_pred CCCCHHHHHHHHHh
Q 041160 167 GLIPIQMMRDIIDN 180 (182)
Q Consensus 167 g~~~~~~l~~~l~~ 180 (182)
...+.+++.+.|.+
T Consensus 71 ~~ls~~e~i~ll~~ 84 (112)
T cd03034 71 PELSDEELIDAMAA 84 (112)
T ss_pred cCCCHHHHHHHHHh
Confidence 23566666666654
No 279
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=69.53 E-value=14 Score=22.21 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=32.4
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCcccEEEE
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD----EYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~i~~~Pt~~~ 153 (182)
.|+.++|+.|++..-.+++..- .+....+|... ..++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 5778899999987766665432 34455565432 344555555668899863
No 280
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=63.81 E-value=87 Score=26.18 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=67.7
Q ss_pred ceeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC--CcEEEEEECCCcHHHH----HhcCCC-
Q 041160 74 YLVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES--SAMIVKVDTDDEYEFA----RDMQVR- 146 (182)
Q Consensus 74 ~~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~----~~~~i~- 146 (182)
.++..++.+++-+...+.-+...+|-|--.--+.-..+...++++++.+.+ +..++.||-|+-+-+. +.|+|.
T Consensus 249 ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl 328 (383)
T PF01216_consen 249 PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDL 328 (383)
T ss_dssp -SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-T
T ss_pred hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccc
Confidence 357778887766665544344567778888899999999999999999865 5889999999887653 456765
Q ss_pred cccEEEEEcCCCCeeee-e---ecCCCCHHHHHHHHHhhC
Q 041160 147 GLPTLFFISPDPNKDAI-R---TEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~~~~-~---~~g~~~~~~l~~~l~~~l 182 (182)
.-|.+-+++-....-+. . -....+.+++.+||++.|
T Consensus 329 ~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVl 368 (383)
T PF01216_consen 329 SRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVL 368 (383)
T ss_dssp TS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHH
T ss_pred cCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHh
Confidence 34999888765332221 1 123457899999998753
No 281
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=63.74 E-value=11 Score=25.93 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=21.8
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD 134 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 134 (182)
+..|+.+.|+.|++....|++- ++.|-.+|+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehh
Confidence 4568899999999887666554 3445555543
No 282
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=62.18 E-value=12 Score=30.84 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=42.6
Q ss_pred cEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 126 AMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 126 v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
...+..|..+...+..-|.+..+|.+.+++.-..+.+.+..|....+.|..-+++
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~ 187 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNE 187 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHH
Confidence 4445777788889999999999999999998755666777787777776666554
No 283
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=61.83 E-value=24 Score=31.17 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=52.9
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHH---HHHHHHhcCCcEEEEEECCCcHHHH--------HhcCCCcc
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEI---ELLAVEYESSAMIVKVDTDDEYEFA--------RDMQVRGL 148 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~--------~~~~i~~~ 148 (182)
..+.|++.-.+ +|++++-..-+.|..|..|..+- ++.++.+..+..-++||.++-+++- ...|-.|.
T Consensus 101 gqeaf~kar~e--nkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGW 178 (786)
T KOG2244|consen 101 GQEAFNKARAE--NKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGW 178 (786)
T ss_pred hHHHHHHHHhc--CCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCC
Confidence 45677766555 78999999999999999887643 4566666545555666666655543 34566788
Q ss_pred cEEEEEcCC
Q 041160 149 PTLFFISPD 157 (182)
Q Consensus 149 Pt~~~~~~~ 157 (182)
|.-+++.++
T Consensus 179 PmsV~LTPd 187 (786)
T KOG2244|consen 179 PMSVFLTPD 187 (786)
T ss_pred ceeEEeCCC
Confidence 888888664
No 284
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=61.01 E-value=9.2 Score=28.11 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=18.1
Q ss_pred HHHHHhcCCCcccEEEEEcCCC
Q 041160 137 YEFARDMQVRGLPTLFFISPDP 158 (182)
Q Consensus 137 ~~~~~~~~i~~~Pt~~~~~~~g 158 (182)
.+.+.++||.++||+++.+.++
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3557789999999999998763
No 285
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.21 E-value=32 Score=23.23 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=32.0
Q ss_pred cCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcC-CCcccEE
Q 041160 102 ATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQ-VRGLPTL 151 (182)
Q Consensus 102 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~-i~~~Pt~ 151 (182)
.|-||...+....|... . -+.|..+|+=+++++.+... ....||+
T Consensus 27 ~P~CGFS~~~vqiL~~~----g-~v~~~~vnVL~d~eiR~~lk~~s~WPT~ 72 (105)
T COG0278 27 FPQCGFSAQAVQILSAC----G-VVDFAYVDVLQDPEIRQGLKEYSNWPTF 72 (105)
T ss_pred CCCCCccHHHHHHHHHc----C-CcceeEEeeccCHHHHhccHhhcCCCCC
Confidence 36699888776666544 2 27799999988888876554 3567777
No 286
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=57.99 E-value=27 Score=21.52 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=33.2
Q ss_pred EEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCcccEEE
Q 041160 98 IDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD----DEYEFARDMQVRGLPTLF 152 (182)
Q Consensus 98 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d----~~~~~~~~~~i~~~Pt~~ 152 (182)
..|+.+.|+.|++..-.+++.. -.+.+..+|.. ..+++.+......+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG----LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC----CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 4577888999987765544442 23556666653 234566666677899885
No 287
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=55.86 E-value=90 Score=23.81 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=43.9
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC------------------cHHHHHhcCCCc--ccEEEEEcC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD------------------EYEFARDMQVRG--LPTLFFISP 156 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~------------------~~~~~~~~~i~~--~Pt~~~~~~ 156 (182)
|=.|++..|+.|--....|.+++.+ + +|..+...+|- .+...+.++..+ +|-+++ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 3358889999999999999999988 3 67766666542 235666777665 466543 3
Q ss_pred CCCeeeeeecCCCCHHHHHHHHHh
Q 041160 157 DPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 157 ~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
| ... ..| .....+...|++
T Consensus 78 G-~~~---~~g-~~~~~~~~ai~~ 96 (202)
T PF06764_consen 78 G-REH---RVG-SDRAAVEAAIQA 96 (202)
T ss_dssp T-TEE---EET-T-HHHHHHHHHH
T ss_pred C-eee---eec-cCHHHHHHHHHH
Confidence 3 222 234 466666666654
No 288
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=54.20 E-value=60 Score=21.31 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=39.6
Q ss_pred cCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-HHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 102 ATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-EFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 102 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
..+|++|++..=.+.+.. -.+.+..+|....+ ++.+..-...+|++. +++ ... .+...|.++|++
T Consensus 19 ~g~cpf~~rvrl~L~eKg----i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~---~~i-----~eS~~I~eYLde 84 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKG----VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNG---EVK-----TDNNKIEEFLEE 84 (91)
T ss_pred CCCChhHHHHHHHHHHCC----CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECC---EEe-----cCHHHHHHHHHH
Confidence 368999998877666541 13556777766544 455555567789554 433 222 355677777765
No 289
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=53.97 E-value=31 Score=24.83 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=28.8
Q ss_pred cccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 147 GLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+++.-++||||+...++......+++++...|++.
T Consensus 69 A~~~~~VyDnG~~~vVi~v~~~i~~~~leaTL~Qa 103 (145)
T PF10726_consen 69 AVRYPIVYDNGADQVVIAVPPDITPEALEATLEQA 103 (145)
T ss_pred ceEeeEEEECCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35667899999988888777789999999998864
No 290
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=53.86 E-value=74 Score=22.25 Aligned_cols=50 Identities=6% Similarity=0.181 Sum_probs=31.2
Q ss_pred CcEEEEEECCCcH----------HHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 125 SAMIVKVDTDDEY----------EFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 125 ~v~~~~vd~d~~~----------~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
.+.+...+...++ ++.++-|..+.|-++ ++ | .+.....+.+.++|.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl-Vd-G---eiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL-VD-G---EIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE-ET-T---EEEEESS---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE-EC-C---EEEEecCCCCHHHHHHHhC
Confidence 5889999988765 456677899999874 43 3 3445556678999999974
No 291
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=53.32 E-value=42 Score=20.31 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=40.8
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC----CcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD----DEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQ 172 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d----~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~ 172 (182)
+..|+.+.|+.|++..-.+++..- .+....++.. ..+++.+......+|++. ++ |. .. ....
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~-g~--~l-----~es~ 67 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV----DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DG-DL--KL-----FESR 67 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC----CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--EC-CE--EE-----EcHH
Confidence 344556669999888776666532 2444555543 234566666778899874 33 31 21 2445
Q ss_pred HHHHHHHh
Q 041160 173 MMRDIIDN 180 (182)
Q Consensus 173 ~l~~~l~~ 180 (182)
.|.++|.+
T Consensus 68 aI~~yL~~ 75 (76)
T cd03053 68 AITRYLAE 75 (76)
T ss_pred HHHHHHhh
Confidence 66666654
No 292
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.25 E-value=33 Score=26.69 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=26.3
Q ss_pred CcEEEEEEcC-CChhHHHhHHHHHHHHHHhcCCc
Q 041160 94 VPIIIDFYAT-WCGPCILMAQEIELLAVEYESSA 126 (182)
Q Consensus 94 k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~~v 126 (182)
+.+-|++|++ =||.|-.-.+.|+++...+++.+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 3456666654 59999999999999999998643
No 293
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=48.75 E-value=58 Score=19.56 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=31.7
Q ss_pred cCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 102 ATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 102 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
.+||++|++..-.++...- .+.+..++... .-.-..+|++.. +|. .. .....|.++|++
T Consensus 13 ~s~sp~~~~v~~~L~~~~i----~~~~~~~~~~~------~~p~g~vP~l~~---~g~--~l-----~es~~I~~yL~~ 71 (72)
T cd03054 13 PSLSPECLKVETYLRMAGI----PYEVVFSSNPW------RSPTGKLPFLEL---NGE--KI-----ADSEKIIEYLKK 71 (72)
T ss_pred CCCCHHHHHHHHHHHhCCC----ceEEEecCCcc------cCCCcccCEEEE---CCE--EE-----cCHHHHHHHHhh
Confidence 4799999988877766321 23333343321 122346787753 221 11 234677777764
No 294
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=48.10 E-value=1e+02 Score=22.08 Aligned_cols=64 Identities=6% Similarity=0.045 Sum_probs=45.3
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcc-cEEEEEcCCC
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGL-PTLFFISPDP 158 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~-Pt~~~~~~~g 158 (182)
+++-.|.+|-.-|+.|-.....+.+.- -++.+.|+.+..+....+.+..++.-- +-.+++..+|
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g 70 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAG 70 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCC
Confidence 556788899999999998555554432 233588888888888888888888644 4455555554
No 295
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=47.76 E-value=46 Score=24.51 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcC-CcEEEEEECCCcHHHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 112 AQEIELLAVEYES-SAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 112 ~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
...++.+.+...+ +..++..|+|.+.++...+=+...= ..+.+.....+.. .+.+.|.+-+++
T Consensus 106 ~~~~~~l~~l~~~~~~iiiatD~drEGe~I~~~i~~~~~-----~~~~~v~R~~fs~-it~~~I~~a~~n 169 (170)
T cd03361 106 LETLEALRELALEVDEVLIATDPDTEGEKIAWDVYLALR-----PYNKNIKRAEFHE-VTRRAILEALRN 169 (170)
T ss_pred HHHHHHHHHHHhhCCEEEEecCCCccHHHHHHHHHHHhc-----cCCCCeEEEEEec-CCHHHHHHHHhC
Confidence 3455555554443 4678888999887643332111110 0011234555554 788888887765
No 296
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=44.66 E-value=32 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=18.6
Q ss_pred EEEEEcCCChhHHHhHHHHHHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELLA 119 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~ 119 (182)
+..|+.+-|+.||+....+++..
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 56688999999999888776653
No 297
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=44.51 E-value=54 Score=26.38 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=49.8
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEE-CC--CcHHHHHhcCC-CcccEEEEEc
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVD-TD--DEYEFARDMQV-RGLPTLFFIS 155 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd-~d--~~~~~~~~~~i-~~~Pt~~~~~ 155 (182)
+.+++..-|...+.....|..|++.|..=....|..++.. ++-.+.+...| +- .+..+...|.. .+.|.+..+-
T Consensus 61 Sa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g--~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~ 138 (305)
T COG5309 61 SADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASG--FKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVT 138 (305)
T ss_pred CHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcC--ceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEE
Confidence 4444444443333445589999988887555444443332 11112222222 11 12234444443 3556665555
Q ss_pred CCCCeeeeeecCCCCHHHHHHHHHh
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDIIDN 180 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~l~~ 180 (182)
-|. +. -+.+..+.++|.+.|..
T Consensus 139 VGn-Ea--l~r~~~tasql~~~I~~ 160 (305)
T COG5309 139 VGN-EA--LNRNDLTASQLIEYIDD 160 (305)
T ss_pred ech-hh--hhcCCCCHHHHHHHHHH
Confidence 442 22 24567899999998865
No 298
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=43.74 E-value=1.6e+02 Score=23.24 Aligned_cols=86 Identities=9% Similarity=0.156 Sum_probs=52.7
Q ss_pred CCcEEEE-EEcCCChhHHHh--HHHHHHHHHHhcCCcEEEEEECCCc---------------------------------
Q 041160 93 NVPIIID-FYATWCGPCILM--AQEIELLAVEYESSAMIVKVDTDDE--------------------------------- 136 (182)
Q Consensus 93 ~k~vvv~-F~a~wC~~C~~~--~p~l~~l~~~~~~~v~~~~vd~d~~--------------------------------- 136 (182)
||+.||. |...|-..|..- .|..+++...-.+.+.++.|++.++
T Consensus 122 gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~ 201 (252)
T PF05176_consen 122 GKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLFMGSLRKSIPEERHDRYFIVYRGQ 201 (252)
T ss_pred CceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHHhhhhhccCCHHHCceEEEEeCCc
Confidence 5555444 556665444332 2333444333223578888887542
Q ss_pred --HHHHHhcCCC--cccEEEEEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 137 --YEFARDMQVR--GLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 137 --~~~~~~~~i~--~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
.++.+.+++. -+..++++|..|+ +.....|..+.+++..+.+
T Consensus 202 ~~~~iRe~Lgi~N~~~GYvyLVD~~gr-IRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 202 LSDDIREALGINNSYVGYVYLVDPNGR-IRWAGSGPATPEELESLWK 247 (252)
T ss_pred ccHHHHHHhCCCCCCcCeEEEECCCCe-EEeCccCCCCHHHHHHHHH
Confidence 2455666665 3677888888875 6788889888888876653
No 299
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=42.09 E-value=44 Score=25.18 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=24.0
Q ss_pred HHHHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHH
Q 041160 138 EFARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDII 178 (182)
Q Consensus 138 ~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l 178 (182)
+-+.+.||.|+|++++=+++|+ ...+.|.--.+.+.+.|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~--~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGK--TEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCC--ccceecCCcHHHHHHHh
Confidence 3456679999999988544332 12456754455555544
No 300
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=42.04 E-value=82 Score=22.98 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=36.0
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD 135 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 135 (182)
+.-+.+.++++.++.|.-+...++.+++.+.+ +|.+-.+++.+
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECMH 170 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecccC
Confidence 34578888899999999999999999999987 77777776653
No 301
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=40.67 E-value=80 Score=18.91 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=31.3
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC-cHHHHHhcCCCcccEEEE
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD-EYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~~~~~~i~~~Pt~~~ 153 (182)
.|+.+.|++|++..-.++... .+-.+..+.+|... .+++.+......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE
Confidence 466788999987766555421 11134555555332 345556666678897753
No 302
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=40.42 E-value=1.4e+02 Score=24.65 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=46.4
Q ss_pred eeeecCHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhcC---CcEEEEEECCCcHHHHHhcC
Q 041160 75 LVKKKTAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYES---SAMIVKVDTDDEYEFARDMQ 144 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~ 144 (182)
.|.++|-++.+++..+ |.|.+|+|..+.--...+. .-+.+++++.+ .+.++..|+..-......+|
T Consensus 211 LVREiTFeN~EELtEE--GlPflILf~~kdD~~s~k~--F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~Hlg 279 (375)
T KOG0912|consen 211 LVREITFENAEELTEE--GLPFLILFRKKDDKESEKI--FKNAIARELDDETLAINFLTADGKVFKHPLRHLG 279 (375)
T ss_pred hhhhhhhccHHHHhhc--CCceEEEEecCCcccHHHH--HHHHHHHHhhhhhhccceeecCcceecchHHHhC
Confidence 5777888888888766 9999999998876655432 33555555544 37888888887655555555
No 303
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=39.70 E-value=36 Score=22.15 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=22.5
Q ss_pred EEcCC---ChhH--HHhH---HHHHHHHHHhcCC-cEEEEEECC
Q 041160 100 FYATW---CGPC--ILMA---QEIELLAVEYESS-AMIVKVDTD 134 (182)
Q Consensus 100 F~a~w---C~~C--~~~~---p~l~~l~~~~~~~-v~~~~vd~d 134 (182)
||+.| |..| +... .++++-.++|++. |.++.+|-.
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 56666 7777 5444 4555566777765 678888754
No 304
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=39.59 E-value=1e+02 Score=24.22 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEE--EEEC----------------CCcHHHHHhcCCCcccEEEEEc
Q 041160 94 VPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIV--KVDT----------------DDEYEFARDMQVRGLPTLFFIS 155 (182)
Q Consensus 94 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~--~vd~----------------d~~~~~~~~~~i~~~Pt~~~~~ 155 (182)
+.||=.|++..|..|--....+.+++++ ++|.-+ .||. +......+.|+-.+++|=-.+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~--~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD--PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC--CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 3455568888999998888888877754 234333 3332 2234677888888888876666
Q ss_pred CCCCeeeeeecCCCCHHHHHHHHH
Q 041160 156 PDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 156 ~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
+| +.. ..| .+...|.+.|+
T Consensus 120 nG-r~~---~~G-ad~~~i~~~i~ 138 (261)
T COG5429 120 NG-RVH---ANG-ADPGAIEDAIA 138 (261)
T ss_pred ec-hhh---hcC-CCHHHHHHHHH
Confidence 55 222 234 45556665554
No 305
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=38.93 E-value=43 Score=25.55 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEEE
Q 041160 115 IELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFFI 154 (182)
Q Consensus 115 l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 154 (182)
+.++.+.++..+.| |....+.++|+|..+|+++.=
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~Lt~rF~I~~VPavV~q 192 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGKLTQKFGIKHVPARVSQ 192 (202)
T ss_pred HHHHHHHhCCceEE-----cCCchHhhccCceeeceEEEe
Confidence 56677777544443 667789999999999999864
No 306
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=37.65 E-value=76 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=18.3
Q ss_pred EEEEc--CCChhHHHhHHHHHHHHHHhcCCcEE
Q 041160 98 IDFYA--TWCGPCILMAQEIELLAVEYESSAMI 128 (182)
Q Consensus 98 v~F~a--~wC~~C~~~~p~l~~l~~~~~~~v~~ 128 (182)
|..|+ +-|..|. +.++++.+.|++ +.+
T Consensus 99 i~l~te~~pC~SC~---~vi~qF~~~~pn-i~~ 127 (133)
T PF14424_consen 99 IDLFTELPPCESCS---NVIEQFKKDFPN-IKV 127 (133)
T ss_pred EEEEecCCcChhHH---HHHHHHHHHCCC-cEE
Confidence 44555 4499998 477778888874 443
No 307
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=37.31 E-value=72 Score=19.21 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=38.7
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCC-CcccEEEEEcCCCCeeeeeecCCCCHHHHHH
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE-YEFARDMQV-RGLPTLFFISPDPNKDAIRTEGLIPIQMMRD 176 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~i-~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~ 176 (182)
.++.+.|+.|++..-.+++..- .+....+|.... +++.+.... ..+|++. + +|. . ......|.+
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl----~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~--~-~~~--~-----l~eS~aI~~ 68 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV----PYEYVEEDLGNKSELLLASNPVHKKIPVLL--H-NGK--P-----ICESLIIVE 68 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC----CCEEEEeCcccCCHHHHHhCCCCCCCCEEE--E-CCE--E-----eehHHHHHH
Confidence 4567789999988776666532 344445554432 333343333 6899885 2 332 1 134467777
Q ss_pred HHHh
Q 041160 177 IIDN 180 (182)
Q Consensus 177 ~l~~ 180 (182)
+|++
T Consensus 69 yL~~ 72 (74)
T cd03058 69 YIDE 72 (74)
T ss_pred HHHh
Confidence 7765
No 308
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=36.97 E-value=88 Score=22.27 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=7.2
Q ss_pred CCChhHHHhHHH
Q 041160 103 TWCGPCILMAQE 114 (182)
Q Consensus 103 ~wC~~C~~~~p~ 114 (182)
+=||.||..+-+
T Consensus 86 sPCG~CRQ~i~E 97 (134)
T COG0295 86 SPCGACRQVLAE 97 (134)
T ss_pred CCcHHHHHHHHH
Confidence 348888755443
No 309
>PRK10853 putative reductase; Provisional
Probab=34.87 E-value=49 Score=22.76 Aligned_cols=32 Identities=9% Similarity=-0.077 Sum_probs=22.6
Q ss_pred EEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECC
Q 041160 97 IIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTD 134 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 134 (182)
+..|+.+.|+.||+....|++- ++.+-.+|.-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehc
Confidence 4567789999999988877653 3555555543
No 310
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=34.68 E-value=90 Score=21.48 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=44.5
Q ss_pred ChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-HHHHhcC--CCcccEEEEEcCCCCe-eeeeecCC---CCHHHHHHH
Q 041160 105 CGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-EFARDMQ--VRGLPTLFFISPDPNK-DAIRTEGL---IPIQMMRDI 177 (182)
Q Consensus 105 C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~--i~~~Pt~~~~~~~g~~-~~~~~~g~---~~~~~l~~~ 177 (182)
|++|..++..+...-.. ...+.+..|+...-+ ++.+..| =++.|++++=+..-.. ....+.|. .+.+.|.+.
T Consensus 24 Cp~c~~iEGlLa~~P~l-~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDL-RERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred CCchHHHHhHHhhChhh-hhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 99999888777655433 336889999988765 3444444 2589999776543111 11112221 245677766
Q ss_pred HHh
Q 041160 178 IDN 180 (182)
Q Consensus 178 l~~ 180 (182)
|.+
T Consensus 103 La~ 105 (112)
T PF11287_consen 103 LAE 105 (112)
T ss_pred HHH
Confidence 643
No 311
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=34.13 E-value=83 Score=21.03 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=38.3
Q ss_pred EEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcH-------HHHHhcCCCcccEEEEEcCCCCeeeeeec-----C
Q 041160 100 FYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEY-------EFARDMQVRGLPTLFFISPDPNKDAIRTE-----G 167 (182)
Q Consensus 100 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~~~~i~~~Pt~~~~~~~g~~~~~~~~-----g 167 (182)
|+.+-|..|++....|++- ++.+-.+|.-+++ ++.+..+.. .--+++..|. .++-. .
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~p~s~~el~~~l~~~~~~---~~~lin~~~~--~~k~l~~~~~~ 69 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKEPLSREELRELLSKLGNG---PDDLINTRSK--TYKELGKLKKD 69 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS---HHHHHHHHHHHTSS---GGGGB-TTSH--HHHHTTHHHCT
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhCCCCHHHHHHHHHHhccc---HHHHhcCccc--hHhhhhhhhhh
Confidence 5678999999988887752 4667778887643 455555532 2223444432 22222 2
Q ss_pred CCCHHHHHHHHHh
Q 041160 168 LIPIQMMRDIIDN 180 (182)
Q Consensus 168 ~~~~~~l~~~l~~ 180 (182)
..+.+++.+.|.+
T Consensus 70 ~~s~~e~i~~l~~ 82 (110)
T PF03960_consen 70 DLSDEELIELLLE 82 (110)
T ss_dssp TSBHHHHHHHHHH
T ss_pred hhhhHHHHHHHHh
Confidence 4677777777754
No 312
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=33.06 E-value=18 Score=20.47 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=15.1
Q ss_pred CCChhHHHhHHHHHHHHHHhc
Q 041160 103 TWCGPCILMAQEIELLAVEYE 123 (182)
Q Consensus 103 ~wC~~C~~~~p~l~~l~~~~~ 123 (182)
-+|.|||.=.+.+.++.++..
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHT
T ss_pred CCCCCcHhHHHHHHHHHHHHH
Confidence 479999998888888777653
No 313
>PRK10026 arsenate reductase; Provisional
Probab=32.65 E-value=64 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=18.1
Q ss_pred EEEEEcCCChhHHHhHHHHHHH
Q 041160 97 IIDFYATWCGPCILMAQEIELL 118 (182)
Q Consensus 97 vv~F~a~wC~~C~~~~p~l~~l 118 (182)
+..|+.+.|+.||+....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5678899999999988777654
No 314
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=32.33 E-value=1.8e+02 Score=21.60 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=35.9
Q ss_pred CCcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCCCcccEEE
Q 041160 93 NVPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE-YEFARDMQVRGLPTLF 152 (182)
Q Consensus 93 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~i~~~Pt~~ 152 (182)
+...+..|+.++|+.|++..=.+++.. -.+.+..+|.+.. +++.+..-...+|++.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~ 63 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKG----VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV 63 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCC----CCCEEEeCCcccCCHHHHHhCCCCCCCEEE
Confidence 334455666778999998886665542 2455666666543 3555555567889985
No 315
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=31.84 E-value=75 Score=22.19 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=18.2
Q ss_pred EEEEEEcCCChhHHHhHHHHHHH
Q 041160 96 IIIDFYATWCGPCILMAQEIELL 118 (182)
Q Consensus 96 vvv~F~a~wC~~C~~~~p~l~~l 118 (182)
.+..|+-+.|..||+....|++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35668889999999988777654
No 316
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=31.43 E-value=16 Score=26.12 Aligned_cols=13 Identities=15% Similarity=0.366 Sum_probs=11.3
Q ss_pred CChhHHHhHHHHH
Q 041160 104 WCGPCILMAQEIE 116 (182)
Q Consensus 104 wC~~C~~~~p~l~ 116 (182)
-|++|+...|.|.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 5999999999874
No 317
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=31.17 E-value=16 Score=26.11 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=11.3
Q ss_pred CChhHHHhHHHHH
Q 041160 104 WCGPCILMAQEIE 116 (182)
Q Consensus 104 wC~~C~~~~p~l~ 116 (182)
-|++|+...|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999999874
No 318
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=30.20 E-value=1.1e+02 Score=21.21 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=21.0
Q ss_pred HHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 140 ARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 140 ~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
+..+||..+|.++|-++ .++ .|..+...-.+.++
T Consensus 76 Aw~lgi~k~PAVVfD~~---~VV---YG~tDV~~A~~~~~ 109 (114)
T PF07511_consen 76 AWSLGITKYPAVVFDDR---YVV---YGETDVARALARIE 109 (114)
T ss_pred HHHhCccccCEEEEcCC---eEE---ecccHHHHHHHHHH
Confidence 66799999999976532 233 36555554444443
No 319
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=30.09 E-value=3.1e+02 Score=22.46 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=42.7
Q ss_pred CChhHHHhHHHHHHHHHHhcCCcEEEEEECCC------cHHHHHhcCCC-----cccEEEEEcCCCCe----eeeeecCC
Q 041160 104 WCGPCILMAQEIELLAVEYESSAMIVKVDTDD------EYEFARDMQVR-----GLPTLFFISPDPNK----DAIRTEGL 168 (182)
Q Consensus 104 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~------~~~~~~~~~i~-----~~Pt~~~~~~~g~~----~~~~~~g~ 168 (182)
=-++..-....+++++..|-.+-.++.|+-+. +.++.+.+|+. ..|-+++++.+.+- +.+...|+
T Consensus 160 pG~hn~L~kaIIEeFaprF~pg~~vLyvgDtg~K~~~~d~~~l~~LGi~i~~h~klPDvVl~~~~k~wl~liEaVtS~GP 239 (306)
T PF06616_consen 160 PGPHNELIKAIIEEFAPRFAPGPEVLYVGDTGDKVLYFDEELLKELGITIDAHGKLPDVVLYDEEKNWLFLIEAVTSHGP 239 (306)
T ss_dssp SSTTHHHHHHHHHTHHHHHSTT-EEEEEE-SSSS-EEE-HHHHHHC-----TT----SEEEEETTTTEEEEEEE--TT--
T ss_pred CCcchHHHHHHHHHHHHhhCCCceEEEEcCCCCceeeccHHHHHHcCCCccccCCCCCEEEEeCCCCcEEEEEEEcCcCC
Confidence 35777888888999999997766666665332 45788888874 68999999988652 44555677
Q ss_pred CCHHHHHHH
Q 041160 169 IPIQMMRDI 177 (182)
Q Consensus 169 ~~~~~l~~~ 177 (182)
.+.+...++
T Consensus 240 v~~kR~~eL 248 (306)
T PF06616_consen 240 VDPKRKREL 248 (306)
T ss_dssp --HHHHHHH
T ss_pred CCHHHHHHH
Confidence 776655443
No 320
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=29.55 E-value=73 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=22.4
Q ss_pred eecCHHHHHHHHHcCCCCcEEEEEEc
Q 041160 77 KKKTAQEIQELVRGERNVPIIIDFYA 102 (182)
Q Consensus 77 ~~~~~~~~~~~l~~~~~k~vvv~F~a 102 (182)
..++++++-+++++.+..||+|+|--
T Consensus 36 T~lsG~elV~lIk~a~~DPV~VMfDD 61 (180)
T PF14097_consen 36 TPLSGEELVELIKQAPHDPVLVMFDD 61 (180)
T ss_pred CcCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 34699999999999889999999954
No 321
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=28.90 E-value=97 Score=22.18 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=26.0
Q ss_pred cccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 147 GLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 147 ~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
+-|.+.+.+.+|+....-....+..+.+.+|+++-
T Consensus 116 ~~P~l~llDadgk~kE~lsI~kWntdtl~eff~ek 150 (154)
T KOG3384|consen 116 SDPVLKLLDADGKHKESLSIDKWNTDTLEEFFREK 150 (154)
T ss_pred CCCeeEeecCCCCccceeeecccChHHHHHHHHHH
Confidence 56999999999875444344558889999988753
No 322
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=28.74 E-value=2.2e+02 Score=21.26 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=27.6
Q ss_pred EEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 100 FYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 100 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
++...|++|++..-.++...-. +..+.++.+++....+......+|++..
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~----~e~~~~~~~~~~~~~~~np~g~vP~l~~ 52 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIP----VEKHVLLNDDEETPIRMIGAKQVPILQK 52 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCC----eEEEECCCCcchhHHHhcCCCCcceEEe
Confidence 4566799998776666554322 2333333333333444444567897743
No 323
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=28.74 E-value=1.8e+02 Score=22.34 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 115 IELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 115 l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
+.++.+.++..+.| |....+.++|+|..+|+++.
T Consensus 156 ~~~~~~~l~~~vYf-----dQ~G~Lt~rF~I~~VPAvV~ 189 (209)
T PRK13738 156 IPEMSKALDSRIYF-----DQNGVLCQRFGIDQVPARVS 189 (209)
T ss_pred HHHHHHHhCCceEE-----cCcchHHHhcCCeeeceEEE
Confidence 35666666544443 56677999999999999986
No 324
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=28.16 E-value=1.3e+02 Score=21.68 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=24.8
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEE
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVK 130 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~ 130 (182)
.|+..-||.|--..+.++++..+++-.+.+--
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p 34 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRP 34 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEee
Confidence 45667899999999999999998864444433
No 325
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=27.63 E-value=50 Score=23.61 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=23.1
Q ss_pred CcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhh
Q 041160 146 RGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNE 181 (182)
Q Consensus 146 ~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 181 (182)
.-.|-...|-++|+...+...| ...++|.+.|.+.
T Consensus 72 tpsPF~R~YlddGr~vL~Dld~-~~r~eI~~hl~K~ 106 (169)
T KOG4079|consen 72 TPSPFARAYLDDGREVLFDLDG-MKREEIEKHLAKT 106 (169)
T ss_pred CCChHHHheecCcceEEEEccc-ccHHHHHHHHHHH
Confidence 3445555566677777777766 5777887777654
No 326
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=26.31 E-value=1.8e+02 Score=20.98 Aligned_cols=41 Identities=5% Similarity=0.133 Sum_probs=26.8
Q ss_pred CHHHHHHHHHcCCCCcEEEEEEcCCChhHHHhHHHHHHHHHHhc
Q 041160 80 TAQEIQELVRGERNVPIIIDFYATWCGPCILMAQEIELLAVEYE 123 (182)
Q Consensus 80 ~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~ 123 (182)
..+.+.+++.+.+-.+++| +-|...|+++...+.++.++..
T Consensus 51 ~~~~l~~~i~~~kP~vI~v---~g~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAV---GGNSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE-----SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCeEEEE---cCCChhHHHHHHHHHHHHHHhh
Confidence 3345556777754444444 4589999999999999888764
No 327
>PRK10387 glutaredoxin 2; Provisional
Probab=26.25 E-value=1.1e+02 Score=22.49 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=29.3
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCcHHHHHhcCCCcccEEEE
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDEYEFARDMQVRGLPTLFF 153 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~ 153 (182)
.++.+.|++|++..-.++...- .+....++..++....+......+|+++.
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi----~y~~~~~~~~~~~~~~~~~p~~~VPvL~~ 53 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNI----PVELIVLANDDEATPIRMIGQKQVPILQK 53 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCC----CeEEEEcCCCchhhHHHhcCCcccceEEe
Confidence 3456779999987766655432 23444455443333333344557888854
No 328
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=25.35 E-value=2e+02 Score=18.77 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=19.3
Q ss_pred HHHhHHHHHHHHHHhcC-CcEEEEEECCCcHHHHHh
Q 041160 108 CILMAQEIELLAVEYES-SAMIVKVDTDDEYEFARD 142 (182)
Q Consensus 108 C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~ 142 (182)
-++....=+.+..-+.. ++.|-.+|++.+++..+.
T Consensus 12 ~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~e 47 (92)
T cd03030 12 STEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQW 47 (92)
T ss_pred cHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHH
Confidence 34333333333333332 588999999877655443
No 329
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=24.68 E-value=2.2e+02 Score=19.00 Aligned_cols=21 Identities=14% Similarity=0.453 Sum_probs=15.6
Q ss_pred EEEEEcCCChhHHHh-HHHHHH
Q 041160 97 IIDFYATWCGPCILM-AQEIEL 117 (182)
Q Consensus 97 vv~F~a~wC~~C~~~-~p~l~~ 117 (182)
|-.||-+-||.|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 567899999999986 334554
No 330
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.64 E-value=91 Score=23.46 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEEcCCC
Q 041160 79 KTAQEIQELVRGERNVPIIIDFYATWC 105 (182)
Q Consensus 79 ~~~~~~~~~l~~~~~k~vvv~F~a~wC 105 (182)
++-.++.+.+.+. ++|+++.|.+-|=
T Consensus 119 is~~~lr~~l~~~-~~P~LllFGTGwG 144 (185)
T PF09936_consen 119 ISYAELRRMLEEE-DRPVLLLFGTGWG 144 (185)
T ss_dssp B-HHHHHHHHHH---S-EEEEE--TT-
T ss_pred cCHHHHHHHHhcc-CCeEEEEecCCCC
Confidence 4677788877544 7899999999994
No 331
>COG3411 Ferredoxin [Energy production and conversion]
Probab=24.43 E-value=1.4e+02 Score=18.34 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCeeeeeecCCCCHHHHHHHHHhhC
Q 041160 149 PTLFFISPDPNKDAIRTEGLIPIQMMRDIIDNEM 182 (182)
Q Consensus 149 Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~l 182 (182)
|++++|..+ .- .+..+.++..++++++|
T Consensus 18 Pvl~vYpeg---vW---Y~~V~p~~a~rIv~~hl 45 (64)
T COG3411 18 PVLVVYPEG---VW---YTRVDPEDARRIVQSHL 45 (64)
T ss_pred CEEEEecCC---ee---EeccCHHHHHHHHHHHH
Confidence 888888754 22 24478888888887764
No 332
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=24.03 E-value=1.8e+02 Score=20.03 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=21.4
Q ss_pred HHhcCCCcccEEEEEcCCCCeeeeeecCCCCHHHHHHHHH
Q 041160 140 ARDMQVRGLPTLFFISPDPNKDAIRTEGLIPIQMMRDIID 179 (182)
Q Consensus 140 ~~~~~i~~~Pt~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 179 (182)
+..+||..+|.++|=++ -.+ .|..+...-.+.++
T Consensus 77 Aw~lGi~k~PAVV~D~~---~VV---YG~~DV~~A~~~~~ 110 (113)
T TIGR03757 77 AWQLGVTKIPAVVVDRR---YVV---YGETDVARALALIQ 110 (113)
T ss_pred HHHcCCccCCEEEEcCC---eEE---ecCccHHHHHHHHH
Confidence 56799999999966432 133 36666555554444
No 333
>KOG3782 consensus Predicted membrane protein, contains type II SA sequence [General function prediction only]
Probab=23.73 E-value=2.8e+02 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=16.1
Q ss_pred CChhHHHhHHHHHHHHHHhcC
Q 041160 104 WCGPCILMAQEIELLAVEYES 124 (182)
Q Consensus 104 wC~~C~~~~p~l~~l~~~~~~ 124 (182)
-|+.|+....+|+.-..+.++
T Consensus 26 ~CgaC~alVtelE~~IA~vDP 46 (189)
T KOG3782|consen 26 KCGACKALVTELEEAIAKVDP 46 (189)
T ss_pred ccchHHHHHHHHHHHHHhcCc
Confidence 499999999999766555543
No 334
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=22.72 E-value=81 Score=25.45 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=16.5
Q ss_pred CcEEEEE---EcCCChhHHHhHHH
Q 041160 94 VPIIIDF---YATWCGPCILMAQE 114 (182)
Q Consensus 94 k~vvv~F---~a~wC~~C~~~~p~ 114 (182)
...||-| |.-||.-|+....+
T Consensus 41 gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 41 GILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred ceEEEEEecccchhhccHHHhhhc
Confidence 3567888 78899999987664
No 335
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=22.50 E-value=1.5e+02 Score=24.38 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc
Q 041160 94 VPIIIDFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE 136 (182)
Q Consensus 94 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 136 (182)
...+|++ .||.|++....|+.+...- ..+.++.||+.+.
T Consensus 77 ~~~lIEL---GsG~~~Kt~~LL~aL~~~~-~~~~Y~plDIS~~ 115 (319)
T TIGR03439 77 GSMLVEL---GSGNLRKVGILLEALERQK-KSVDYYALDVSRS 115 (319)
T ss_pred CCEEEEE---CCCchHHHHHHHHHHHhcC-CCceEEEEECCHH
Confidence 3468876 4788898889888887432 2588999999864
No 336
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.94 E-value=3.6e+02 Score=20.42 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=34.3
Q ss_pred CCcEEEEEE--cCCChhHHHhHHHHHHHHHHhcC-CcEEEEEECCC
Q 041160 93 NVPIIIDFY--ATWCGPCILMAQEIELLAVEYES-SAMIVKVDTDD 135 (182)
Q Consensus 93 ~k~vvv~F~--a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 135 (182)
+..+.|.|. |+.-+-|-.+...+.+++-++.. ++..+..+||.
T Consensus 31 gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 31 GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 334777787 56789999999999999998875 48888888764
No 337
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=21.09 E-value=3.4e+02 Score=21.11 Aligned_cols=46 Identities=13% Similarity=-0.027 Sum_probs=32.0
Q ss_pred CCChhHHHhHHHHHHHHHHhcCCcEEEEEECCCc-HHHHHhcCCCcccEEE
Q 041160 103 TWCGPCILMAQEIELLAVEYESSAMIVKVDTDDE-YEFARDMQVRGLPTLF 152 (182)
Q Consensus 103 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~i~~~Pt~~ 152 (182)
.-|++|++..-.+.+. +-.+.+..+|.... +++.+..-...+|+++
T Consensus 17 ~~cp~~~rv~i~L~ek----gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~ 63 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK----GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLT 63 (236)
T ss_pred CCCHhHHHHHHHHHHc----CCCcEEEEECCCCCCHHHHHHCcCCCCCEEE
Confidence 5699999888777652 22467788887664 5666655566789885
No 338
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=20.93 E-value=2e+02 Score=17.20 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=32.1
Q ss_pred EEEcCCChhHHHhHHHHHHHHHHhcCCcEEEEEECCC----cHHHHHhcCCCcccEEE
Q 041160 99 DFYATWCGPCILMAQEIELLAVEYESSAMIVKVDTDD----EYEFARDMQVRGLPTLF 152 (182)
Q Consensus 99 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~i~~~Pt~~ 152 (182)
.++.+-++.|++..-.+++..- .+....+|..+ .+++.+......+|++.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 56 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKI----PFEECPIDLRKGEQLTPEFKKINPFGKVPAIV 56 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCC----CcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE
Confidence 4666779999887666665432 34455565532 24566666677899885
No 339
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=20.61 E-value=82 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=32.5
Q ss_pred eeeecCHHHHHHHHHcCC-C--CcEEEEEEcCCChhHHHhHHHHHHHHHHhc
Q 041160 75 LVKKKTAQEIQELVRGER-N--VPIIIDFYATWCGPCILMAQEIELLAVEYE 123 (182)
Q Consensus 75 ~v~~~~~~~~~~~l~~~~-~--k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~ 123 (182)
-.-.++.++|.+.++.-- + -..+-.=-.+|||.|...+..++++++++.
T Consensus 64 sFSfIn~dqlVq~lr~Ia~nA~gyAF~LAL~t~~p~~~~~~~~lq~~~~~lN 115 (361)
T PF06122_consen 64 SFSFINSDQLVQMLRNIASNAPGYAFQLALQTLCPQCGNIMDKLQKIAQALN 115 (361)
T ss_pred ccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 345578888888765321 0 011111125899999999999999998874
No 340
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.58 E-value=3.1e+02 Score=23.41 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=31.3
Q ss_pred CHHHHHHHHHc-CCCCcEEEEEEcCCChhHHHhH--HHHHHHHHHhc-CCcEEEEEEC
Q 041160 80 TAQEIQELVRG-ERNVPIIIDFYATWCGPCILMA--QEIELLAVEYE-SSAMIVKVDT 133 (182)
Q Consensus 80 ~~~~~~~~l~~-~~~k~vvv~F~a~wC~~C~~~~--p~l~~l~~~~~-~~v~~~~vd~ 133 (182)
+...+-+.+.+ ..+--....|-+..||+||.-. ..++++.++.+ .+|.++.+|.
T Consensus 55 tiG~lid~~~~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~ 112 (420)
T COG3581 55 TIGQLIDAIESGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNS 112 (420)
T ss_pred hHHHHHHHHHhCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeec
Confidence 33445544443 2222233445556999999653 45566666655 4688999983
No 341
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=20.26 E-value=3.4e+02 Score=23.06 Aligned_cols=64 Identities=8% Similarity=0.185 Sum_probs=43.8
Q ss_pred CCCCcEEEEEEcCCCh----hHHHhHHHHHHHHHHhcCC-cEEEEEECCCcH-----HHHHhcCCCcccEEEEE
Q 041160 91 ERNVPIIIDFYATWCG----PCILMAQEIELLAVEYESS-AMIVKVDTDDEY-----EFARDMQVRGLPTLFFI 154 (182)
Q Consensus 91 ~~~k~vvv~F~a~wC~----~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~-----~~~~~~~i~~~Pt~~~~ 154 (182)
.+.+...|=|+.|+|- -=|.+-..++.+++++++. ..++.-|.|..+ .+.++|+|+--|.-++|
T Consensus 39 ~~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~F 112 (465)
T KOG1387|consen 39 AEKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFF 112 (465)
T ss_pred hhhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEE
Confidence 3455668889999994 3456667788899999875 456666666544 35678888766655444
No 342
>PRK05578 cytidine deaminase; Validated
Probab=20.18 E-value=64 Score=22.72 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.9
Q ss_pred CCChhHHHhHHHH
Q 041160 103 TWCGPCILMAQEI 115 (182)
Q Consensus 103 ~wC~~C~~~~p~l 115 (182)
+=||.||.++-++
T Consensus 84 sPCG~CRQ~l~e~ 96 (131)
T PRK05578 84 SPCGRCRQVLAEF 96 (131)
T ss_pred CccHHHHHHHHHh
Confidence 5699999776655
Done!