Query 041163
Match_columns 483
No_of_seqs 144 out of 1321
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:54:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 1.5E-22 5.3E-27 213.8 11.4 384 34-455 108-511 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 1.1E-20 3.6E-25 197.9 23.3 353 34-454 107-479 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.6 2.9E-15 1E-19 154.1 17.5 312 34-448 118-435 (451)
4 3o7q_A L-fucose-proton symport 99.5 1.9E-12 6.6E-17 132.5 18.9 268 33-407 115-408 (438)
5 2gfp_A EMRD, multidrug resista 99.4 6.3E-13 2.2E-17 133.7 7.6 263 34-405 87-351 (375)
6 4gc0_A D-xylose-proton symport 99.2 2.4E-10 8.4E-15 118.8 15.9 85 33-123 124-216 (491)
7 2cfq_A Lactose permease; trans 99.1 1.9E-11 6.4E-16 125.4 4.7 138 263-448 263-401 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.7 1.5E-07 5.1E-12 96.2 15.3 145 262-449 65-209 (451)
9 3o7q_A L-fucose-proton symport 98.7 2.2E-07 7.4E-12 94.7 16.0 114 262-404 64-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 98.6 7.8E-07 2.7E-11 92.2 16.7 143 262-452 57-202 (491)
11 2gfp_A EMRD, multidrug resista 98.5 4.7E-07 1.6E-11 90.5 11.5 112 262-405 38-149 (375)
12 2xut_A Proton/peptide symporte 98.3 8.8E-06 3E-10 85.1 15.0 140 262-448 57-200 (524)
13 4gc0_A D-xylose-proton symport 97.6 0.00052 1.8E-08 70.6 14.0 123 265-405 61-187 (491)
14 2cfq_A Lactose permease; trans 95.7 0.0017 5.9E-08 65.7 0.1 87 36-128 313-400 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.87 E-value=1.5e-22 Score=213.81 Aligned_cols=384 Identities=20% Similarity=0.316 Sum_probs=227.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.|+|.|...|+..++++|++|+++ |.++.+.+++++.+.++|.++||.+++++.+.+||++.|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 56788899999999999999999999999998753 334567888899999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCccccc----------
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIG---------- 183 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------- 183 (483)
++..++++++++..+++.++++|++++..+..+.+..+++++..... ........+.......+.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCC 263 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhh
Confidence 99888887777665554433333333222222222222221100000 0000000000000000000000
Q ss_pred -------CCcchhH--HHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCC
Q 041163 184 -------STQNLRF--FNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIG 254 (483)
Q Consensus 184 -------~~~~~~~--l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~ 254 (483)
......| ++..+. .+++++.+++|+.+....+++....++..+.|..+.+..+..+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 332 (524)
T 2xut_A 264 AMVLVMGFVGAGASLQLERARK---------SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP-- 332 (524)
T ss_dssp HHHHHHHHHHTGGGTHHHHSCC---------SCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC--
T ss_pred hhhhhhcccccchhhHHhhhhc---------cccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC--
Confidence 0000011 111100 00111223344555566666667777888888877776665544432
Q ss_pred CCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCc
Q 041163 255 SSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIV 334 (483)
Q Consensus 255 ~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 334 (483)
.+ .+.+.+..++++..++..|+.+++..+..+|++++ .+..+++.+|+++.+++++++.+.+..+
T Consensus 333 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------- 397 (524)
T 2xut_A 333 -QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM---------- 397 (524)
T ss_dssp -SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------
T ss_pred -ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 11 24566777888888888999888866665654333 5667788899999988887765542100
Q ss_pred cCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccc
Q 041163 335 EKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKG 414 (483)
Q Consensus 335 ~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~ 414 (483)
+.....+.+|+++.+++.++++.+..|..++++.+.+|++.||.++|+++...++|+.+|+.+.+.+.+.++ .+
T Consensus 398 --~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~ 471 (524)
T 2xut_A 398 --DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TE 471 (524)
T ss_dssp --TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred --cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence 001124677888999999999999999999999999999999999999999999999999999998875321 13
Q ss_pred cccC-CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 041163 415 WILN-NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKTE 455 (483)
Q Consensus 415 ~~~~-~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~~ 455 (483)
|.++ +.+.. .+.|++.++++++++++++++.+++++++.
T Consensus 472 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 472 QIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHSCHH--HHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4321 11111 223777888888888888877777665554
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=1.1e-20 Score=197.88 Aligned_cols=353 Identities=15% Similarity=0.248 Sum_probs=231.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.|+|.|...|+..++++|++|++++ +|..++++++.+.++|.++||.+++++.+.+||++.|++.
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 567889999999999999999999999999997642 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeec---CCCCC-ccchHHHHHH---------------HHHHhCCcCCCCCcchhhhhhhHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHK---KPTGS-PFTRMAKVIV---------------ATIRKWNVPLPTDPRELYELDLEAY 174 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~---~p~~~-~l~~~~~v~~---------------~a~~~~~~~~~~~~~~l~~~~~~~~ 174 (483)
++..+++++++++.+++..++ +|+.. ...+..+... ....++ .. .+. ......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~-~~--~~~-~~~~~~---- 254 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW-NS--LPA-YINLLT---- 254 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS-CC--TTH-HHHHHH----
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC-cc--ccc-chhhhh----
Confidence 988888877766544433221 11111 1111111000 001100 00 000 000000
Q ss_pred hhcCcccccCCcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhh-cccCC
Q 041163 175 AQKGKYMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTT-LDRAI 253 (483)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~-~~~~~ 253 (483)
..............|+. ......++++.....++++....++..+.+..+.+..+..+ .+.+
T Consensus 255 ---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (491)
T 4aps_A 255 ---------------IVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS- 317 (491)
T ss_dssp ---------------HHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-
T ss_pred ---------------HHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-
Confidence 00000000000000000 00111334444556677777788888888887766544332 2211
Q ss_pred CCCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 041163 254 GSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGI 333 (483)
Q Consensus 254 ~~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~ 333 (483)
..+.+.+.+++.+..++..++.+++.+++.+|. ....+++.+|+++.+++++++.+.....
T Consensus 318 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 378 (491)
T 4aps_A 318 ----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY--------- 378 (491)
T ss_dssp ----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC---------
T ss_pred ----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 145778899999999999999999988876652 4667888999999999988877654210
Q ss_pred ccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcc
Q 041163 334 VEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHK 413 (483)
Q Consensus 334 ~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~ 413 (483)
+.....+.+++++.+++.++|+.+..|..++++.+..|++.||.++|+++....+|+.+++.+.+.+.+..
T Consensus 379 ---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~------ 449 (491)
T 4aps_A 379 ---GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS------ 449 (491)
T ss_dssp ---CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS------
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 00123467788889999999999999999999999999999999999999999999999999988776421
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 041163 414 GWILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKT 454 (483)
Q Consensus 414 ~~~~~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~~~ 454 (483)
+...|.+++++++++.++.++..++.+++.
T Consensus 450 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 450 -----------EVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp -----------TTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677888888888888777776655544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.64 E-value=2.9e-15 Score=154.13 Aligned_cols=312 Identities=10% Similarity=-0.002 Sum_probs=186.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhccc-ccccchh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVG-WALGYGL 112 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g-~~~~F~i 112 (483)
+.+.+++++++.|+|.|...|...++++|++|++ +|.+++++++.+.++|.++||++++++.+.+| |++.|++
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5678889999999999999999999999999864 46789999999999999999999999888898 9999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHH
Q 041163 113 PTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFN 192 (483)
Q Consensus 113 ~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (483)
.++..++..++.++..++..+.+...+. .+ . ... ...+.+. ..++..++-+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~--~~~--~~~~~~~---------~~~~~~~~~~ 242 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRDTPQSCGLPPI-EE---------------Y--KND--YPDDYNE---------KAEQELTAKQ 242 (451)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT---------------T--CCC------------------------CCTH
T ss_pred HHHHHHHHHHHHHhhccCCHhhcCCCCh-hh---------------h--ccc--ccccchh---------hhhccccccc
Confidence 9988777665544333321110000000 00 0 000 0000000 0000000000
Q ss_pred HhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeC---CCCccchhH
Q 041163 193 KAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIP---PASLTGFVT 269 (483)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~---~~~l~~in~ 269 (483)
... .+... .+.+ ..+.+.....+..+....+.+..... ...+ .+ .+.+.++..
T Consensus 243 ~~~-------------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g----~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 243 IFM-------------QYVLP-NKLL---WYIAIANVFVYLLRYGILDWSPTYLK---EVKH----FALDKSSWAYFLYE 298 (451)
T ss_dssp HHH-------------HHTSS-CHHH---HHHHHHHHHHHHHHHHHHHHHHHHBT---TBSC----CCHHHHHHHHHHHH
T ss_pred chH-------------HHHHc-CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HhcC----CCHHHHHHHHHHHH
Confidence 000 00000 1111 11222222222222222222222211 1112 22 244566667
Q ss_pred HHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHH
Q 041163 270 LSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHI-IIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILL 348 (483)
Q Consensus 270 ~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li 348 (483)
+..++..++.+++.+++.+ ...+.+.++.++.. ++++++.+.. ..+.++.+
T Consensus 299 ~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 350 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMNP-------------------AGNPTVDM 350 (451)
T ss_dssp HHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSCC-------------------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHhc-------------------ccCHHHHH
Confidence 7777777777777655411 11122334444433 4444433221 12455666
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHH-HHHHHhhhhhhcccccccCCccccccCCCCCcchHH
Q 041163 349 PQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGV-GNFLSSFLLSTVSDKTKRHGHKGWILNNLNVSHLDY 427 (483)
Q Consensus 349 ~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (483)
...++.+++.....+...+++.+..|++.||+++|+++....+ |..+++.+.+.+.+..+ +..
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g----------------~~~ 414 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG----------------WDG 414 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----------------SHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------cHH
Confidence 7778888888888888999999999999999999999999999 99999999998875321 355
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 041163 428 YYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 428 ~f~~~~~l~lv~~l~~~~~~~ 448 (483)
.|.+.+++.+++.++++...+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777777666544
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.45 E-value=1.9e-12 Score=132.53 Aligned_cols=268 Identities=10% Similarity=0.034 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh-hccc------
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQ-DDVG------ 105 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~-~~~g------ 105 (483)
.+.+.+++++++.|+|.|...|...++++|++|++ +|.++++++..+.++|.++++++++++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 36788899999999999999999999999999875 4577899999999999999999999998 5554
Q ss_pred -------------------ccccchhhHHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchh
Q 041163 106 -------------------WALGYGLPTLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPREL 166 (483)
Q Consensus 106 -------------------~~~~F~i~~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l 166 (483)
|++.|++.++..++..+++++.+.. +.++++++.. +.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~-------------------~~--- 244 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP--ALQSDNHSDA-------------------KQ--- 244 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCTTTCCCCS-------------------ST---
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC--cccccccccc-------------------cc---
Confidence 8999988777666655554442221 1111000000 00
Q ss_pred hhhhhHHHhhcCcccccCCcchhHHHHhhhhcCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 041163 167 YELDLEAYAQKGKYMIGSTQNLRFFNKAAVKTGSTNPWMLCSVTQVEETKQMLAMIPILVAMFVPSTMLAQINTLFVKQG 246 (483)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~v~~~k~l~~~l~l~~~~~~~~~~y~q~~t~~~~~~ 246 (483)
.+....+.+.. .+++.....+..++....+.....+.+..+..+.
T Consensus 245 -----------------~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (438)
T 3o7q_A 245 -----------------GSFSASLSRLA------------------RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI 289 (438)
T ss_dssp -----------------TSHHHHHHHHT------------------TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----------------cchhhhHHHHH------------------hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00000000000 0011111111112222222222222222101110
Q ss_pred hhcccCCCCCeeeCCCCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041163 247 TTLDRAIGSSFKIPPASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLS 326 (483)
Q Consensus 247 ~~~~~~~~~g~~i~~~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~ 326 (483)
.+.+. ...+.+..+..+..++..++.+++.+++.+ .+-+.++.++.++++++..+.+
T Consensus 290 ~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~~----- 346 (438)
T 3o7q_A 290 PGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAP-----------HKVLAAYALIAMALCLISAFAG----- 346 (438)
T ss_dssp TTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCH-----------HHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHHHHcC-----
Confidence 01110 112345556666667777777777655433 2335556666666665544331
Q ss_pred HhhhcCCccCCCCccchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 041163 327 VAKDHGIVEKGQQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDK 406 (483)
Q Consensus 327 ~~~~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~ 406 (483)
+. +.+...++.+++.....|..++.+.+..|++ ++..+++.. ...+|+.++|.+.+.+.+.
T Consensus 347 ----------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 347 ----------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp ----------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred ----------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 22 3344557888899899999999999999987 888888877 6779999999999988864
Q ss_pred c
Q 041163 407 T 407 (483)
Q Consensus 407 ~ 407 (483)
.
T Consensus 408 ~ 408 (438)
T 3o7q_A 408 A 408 (438)
T ss_dssp H
T ss_pred h
Confidence 3
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.36 E-value=6.3e-13 Score=133.66 Aligned_cols=263 Identities=12% Similarity=0.042 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhcccccccchhh
Q 041163 34 QLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDDVGWALGYGLP 113 (483)
Q Consensus 34 ~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~ 113 (483)
+.+.+++++++.+++.+...|...+++.|++|++ +|.++++++..+.++|.+++|.+++++.+.+||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 6778889999999999999999999999999865 4678999999999999999999999999889999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCccchHHHHHHHHHHhCCcCCCCCcchhhhhhhHHHhhcCcccccCCcchhHHHH
Q 041163 114 TLGLAISIVIFLAGTPFYRHKKPTGSPFTRMAKVIVATIRKWNVPLPTDPRELYELDLEAYAQKGKYMIGSTQNLRFFNK 193 (483)
Q Consensus 114 ~v~~~i~lii~~~~~~~~~~~~p~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (483)
++..++..+......+ ++++++++. .. ..
T Consensus 161 ~~~~~~~~~~~~~~~~---~~~~~~~~~---------------------~~------------------~~--------- 189 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMP---ETRPVDAPR---------------------TR------------------LL--------- 189 (375)
T ss_dssp HHHHHHHHCCCCCSSC---CCSTTTCCC---------------------CC------------------TT---------
T ss_pred HHHHHHHHHHHHHHCc---ccCCCCccc---------------------cc------------------HH---------
Confidence 8876665543322222 111110000 00 00
Q ss_pred hhhhcCCCCCcccccchhHHHHHHHHHH-HHHHHHHHHHHHhhhcchhHHHHHHhhcccCCCCCeeeCCCCccchhHHHH
Q 041163 194 AAVKTGSTNPWMLCSVTQVEETKQMLAM-IPILVAMFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLTGFVTLSM 272 (483)
Q Consensus 194 a~~~~~~~~~~~~~~~~~v~~~k~l~~~-l~l~~~~~~~~~~y~q~~t~~~~~~~~~~~~~~~g~~i~~~~l~~in~~~i 272 (483)
..+ .+... .|.+... +..++....+.......+ .+..+..+.+.. ..+.+..+..+..
T Consensus 190 --------~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~-------~~g~~~~~~~~~~ 248 (375)
T 2gfp_A 190 --------TSY----KTLFG-NSGFNCYLLMLIGGLAGIAAFEACSG-VLMGAVLGLSSM-------TVSILFILPIPAA 248 (375)
T ss_dssp --------TCS----THHHH-HHHHHHHHHHHHHHHHHHHHHHHHCS-CSSHHHHHHHHH-------HHHHHHHTHHHHH
T ss_pred --------HHH----HHHhc-CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHH-------HHHHHHHHHHHHH
Confidence 000 00011 1222211 111111222222222121 111111111110 1223444555555
Q ss_pred HHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhcCCccCCCCccchHHHHHHHH
Q 041163 273 LVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVI-HIIIMVIASFTERYRLSVAKDHGIVEKGQQVPLTIFILLPQF 351 (483)
Q Consensus 273 ii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 351 (483)
++..++.+++ .+|. .. ++..+..+ ..++.......... ..+.+..+...
T Consensus 249 ~~~~~~~~~l----~~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 298 (375)
T 2gfp_A 249 FFGAWFAGRP----NKRF-------ST--LMWQSVICCLLAGLLMWIPDWFG-----------------VMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHTT----TTHH-------HH--HHHHHHHHHHHTSSSSSHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHH-------HH--HHHHHHHHHHHHHHHHHHHhhhc-----------------cccHHHHHHHH
Confidence 5555555544 2321 11 34455444 33333221111100 01555566778
Q ss_pred HHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 352 VLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 352 ~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
++.+++.....|...+.+.+..| +.||+.+|+.+....+|..+++.+.+.+.+
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999 789999999999999999999999888764
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.18 E-value=2.4e-10 Score=118.83 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhc--------c
Q 041163 33 LQLGAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNWWMFSIFFGTLLGNTALVYIQDD--------V 104 (483)
Q Consensus 33 ~~~~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~~y~~iNlG~~ig~~l~~~L~~~--------~ 104 (483)
.+.+.++++|++.|+|.|+..|....+++|..|++ +|.+..+++..+..+|.++++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 47889999999999999999999999999999864 467788899999999999999888766542 3
Q ss_pred cccccchhhHHHHHHHHHH
Q 041163 105 GWALGYGLPTLGLAISIVI 123 (483)
Q Consensus 105 g~~~~F~i~~v~~~i~lii 123 (483)
+|++.+.+..+..++.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4gc0_A 198 GWRYMFASECIPALLFLML 216 (491)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred hhHHHhhhhhhhhhhhhhh
Confidence 5666666666654444433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.14 E-value=1.9e-11 Score=125.40 Aligned_cols=138 Identities=11% Similarity=0.025 Sum_probs=94.9
Q ss_pred CccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCccc
Q 041163 263 SLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVPL 342 (483)
Q Consensus 263 ~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (483)
.+.+++.+..++..++.+++.+++.+| +.+.+|.++.+++++...+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~--------------------- 310 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFAT--------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 445566666667777777777665443 224456666666654443221
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHH-HHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 343 TIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY-SMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 343 s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
+.++++...++.+++.....+....++.+..|++.||+.+|+ ++....+|+.++|.+.+.+.+..
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-------------- 376 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------- 376 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--------------
Confidence 444555555667777777777788999999999999999998 58888999999999999776421
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
++...|.+++++++++.++.+...+
T Consensus 377 --g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 377 --GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred --CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1345677777777777776655433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.72 E-value=1.5e-07 Score=96.20 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=109.1
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..|+.+++.|++.+| +-+.+|.++.+++.++..+.... .
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----------------~ 116 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------c
Confidence 4566777788888889999988776554 24667888888888777762100 0
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccCCCC
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILNNLN 421 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
.++++++...++.+++.....|...+++.+..|++.|+..+|++....++|..+|+.+++.+.+..+ +|
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w------ 185 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DW------ 185 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CS------
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cH------
Confidence 1667788889999999999999999999999999999999999999999999999999987653210 14
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 041163 422 VSHLDYYYAFFAILNVLNFVFFLVVAKF 449 (483)
Q Consensus 422 ~~~~~~~f~~~~~l~lv~~l~~~~~~~~ 449 (483)
...|++.+++.++..++.++..+.
T Consensus 186 ----~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 186 ----HAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhccC
Confidence 234566666666666655555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.71 E-value=2.2e-07 Score=94.71 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=94.3
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..|+.+++.|++.+| +-+.+|.++.+++.++...... .
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------I 114 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------T
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------c
Confidence 4566777778888899999998777654 2367788888888777633210 1
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhcc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVS 404 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~ 404 (483)
.+.++++...++.|+|.....+...+++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 267788888999999999999999999999999999999999999999999999999998887
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.60 E-value=7.8e-07 Score=92.23 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=110.5
Q ss_pred CCccchhHHHHHHHHHHHhHHHHh-hhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVR-ITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~-~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
+++.++..+...+..|+.+++.|+ +.+| +-+.+|.++.+++.++..+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 106 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALPF------------------- 106 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 556777888888899999999888 5654 235667777777776665432
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcch--hhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCccccccC
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESM--KSLGTSYSMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWILN 418 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~--~g~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~~ 418 (483)
+.++++...++.++|+....|...+++.+..|++. |+..++.++...++|..+|+.+++.+.+.. +|
T Consensus 107 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~--- 175 (491)
T 4aps_A 107 --GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY--- 175 (491)
T ss_dssp --STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH---
T ss_pred --hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH---
Confidence 56777888899999999999999999999999988 778888899999999999999999887522 23
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 041163 419 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 452 (483)
Q Consensus 419 ~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~~~~~ 452 (483)
...|.+.++..+++.+++++..++..+
T Consensus 176 -------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 -------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 456666677777777666666555443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.50 E-value=4.7e-07 Score=90.47 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=93.6
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCcc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQVP 341 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (483)
+++.++..+...+..|+.+++.|++.+|+ . +.++.++.+++.+...+.+
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~----~~~~~~~~~~~~~~~~~~~-------------------- 86 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRRP-------V----ILVGMSIFMLATLVAVTTS-------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCCC-------C----CHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCch-------h----HHHHHHHHHHHHHHHHHhc--------------------
Confidence 45667777888888899999987776542 1 2467777777777766654
Q ss_pred chHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 342 LTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 342 ~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
+.++++...++.+++.....+...+++.+..|++.|+..+|.+.....+|..+++.+++.+.+
T Consensus 87 -~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 87 -SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 667788888999999999999999999999999999999999999999999999999988874
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.28 E-value=8.8e-06 Score=85.06 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=102.3
Q ss_pred CCccchhHHHHHHHHHHHhHHHHhh-hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCCCCc
Q 041163 262 ASLTGFVTLSMLVCVVLYDRYFVRI-TRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKGQQV 340 (483)
Q Consensus 262 ~~l~~in~~~iii~~pl~~~~~~~~-~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (483)
+++.++..+..++..++.+++.|++ .+| +-+.++.++.+++.++..+.+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIFE------------------- 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 4456666777777888888887665 433 235667777777776655431
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHH---HHHHHHHHHHHHhhhhhhcccccccCCcccccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSY---SMTTLGVGNFLSSFLLSTVSDKTKRHGHKGWIL 417 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~---~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~~~~ 417 (483)
.+.++++...++.++|+....|...+++.+..|++.|+..++. +....++|..+|+.+++.+.+.. +|
T Consensus 107 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~-- 177 (524)
T 2xut_A 107 -HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA-- 177 (524)
T ss_dssp -SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH--
T ss_pred -ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH--
Confidence 1566777888999999999999999999999999999877776 88899999999999988776421 22
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 041163 418 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAK 448 (483)
Q Consensus 418 ~~~~~~~~~~~f~~~~~l~lv~~l~~~~~~~ 448 (483)
...|.+.+++.+++.+++++..+
T Consensus 178 --------~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 178 --------AVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHSSSS
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677767666666655544433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.63 E-value=0.00052 Score=70.64 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=87.0
Q ss_pred cchhHHHHHHHHHHHhHHHHhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCccCC----CCc
Q 041163 265 TGFVTLSMLVCVVLYDRYFVRITRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHGIVEKG----QQV 340 (483)
Q Consensus 265 ~~in~~~iii~~pl~~~~~~~~~~r~~~~~~~~s~~~ki~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 340 (483)
.+...+..++..++.+++-|+++||. -+.++.++..++-+..++.... ....... ...
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~-----------~l~~~~~l~~i~~i~~a~~~~~-------~~~~~~~~~~~~~~ 122 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISGVGSAWPELG-------FTSINPDNTVPVYL 122 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHCTTTT-------TSCSSSSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHhhh-------hhhhcchhHHHHHH
Confidence 34445556667778888888877752 2456666666666665543100 0000000 001
Q ss_pred cchHHHHHHHHHHHhHHHHHHhhhhHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 041163 341 PLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSD 405 (483)
Q Consensus 341 ~~s~~~li~~~~l~~igE~l~~p~~~a~i~~~aP~~~~g~~~g~~~l~~~iG~~lg~~l~~~~~~ 405 (483)
..+++.++..-++.|+|+....+....++.+.+|++.||..++++.....+|..++..+......
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 22667788899999999999999999999999999999999999999999999999888766653
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.74 E-value=0.0017 Score=65.71 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhhcccCCCCChhhhhhhhhhHHH-HHHHHHHHHHHHhhhhhhhhhcccccccchhhH
Q 041163 36 GAFFAALYTLAVGTGGTKPNILTIAADQFDDFEPKEKAHKFSFFNW-WMFSIFFGTLLGNTALVYIQDDVGWALGYGLPT 114 (483)
Q Consensus 36 ~~~~i~l~li~~G~g~~kp~~~alv~d~~~~~~~~er~~r~~~f~~-~y~~iNlG~~ig~~l~~~L~~~~g~~~~F~i~~ 114 (483)
+.+.+...+.+++.+...+...+++.|.+|++ .|..++++ +..+.++|.+++|.++|++.+.+||+..|.+.+
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 34444455556665555566678888888753 35667777 467778999999999999998889999999999
Q ss_pred HHHHHHHHHHHhcC
Q 041163 115 LGLAISIVIFLAGT 128 (483)
Q Consensus 115 v~~~i~lii~~~~~ 128 (483)
+..+++.++.+...
T Consensus 387 ~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 387 LVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhhh
Confidence 88888877655533
Done!