Query 041164
Match_columns 357
No_of_seqs 303 out of 2192
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2840 Uncharacterized conser 100.0 5.5E-47 1.2E-51 345.0 16.2 314 14-328 4-323 (347)
2 PRK10696 tRNA 2-thiocytidine b 100.0 7.8E-44 1.7E-48 329.7 27.9 233 41-283 9-242 (258)
3 COG0037 MesJ tRNA(Ile)-lysidin 100.0 1.3E-42 2.9E-47 328.3 24.9 267 39-319 1-273 (298)
4 PF01171 ATP_bind_3: PP-loop f 100.0 5.2E-39 1.1E-43 282.7 18.1 180 63-257 1-181 (182)
5 PRK10660 tilS tRNA(Ile)-lysidi 100.0 6.5E-37 1.4E-41 302.1 23.5 208 58-283 12-222 (436)
6 cd01993 Alpha_ANH_like_II This 100.0 9.6E-34 2.1E-38 249.2 19.8 182 63-249 1-184 (185)
7 TIGR02432 lysidine_TilS_N tRNA 100.0 8.4E-34 1.8E-38 250.9 19.0 187 63-260 1-189 (189)
8 cd01992 PP-ATPase N-terminal d 100.0 2.2E-32 4.8E-37 240.8 17.8 183 63-260 1-185 (185)
9 KOG2594 Uncharacterized conser 100.0 4.9E-30 1.1E-34 235.8 22.3 294 13-311 12-356 (396)
10 PRK08349 hypothetical protein; 100.0 4.5E-29 9.8E-34 222.3 17.6 180 63-267 2-197 (198)
11 PRK00143 mnmA tRNA-specific 2- 100.0 9E-29 1.9E-33 237.6 13.8 206 63-282 2-224 (346)
12 PRK14665 mnmA tRNA-specific 2- 99.9 1.1E-25 2.3E-30 216.3 13.2 197 57-261 1-209 (360)
13 cd01998 tRNA_Me_trans tRNA met 99.9 6.9E-26 1.5E-30 218.0 11.0 199 63-272 1-217 (349)
14 cd01712 ThiI ThiI is required 99.9 2.2E-24 4.7E-29 188.9 16.6 157 63-242 1-161 (177)
15 cd01997 GMP_synthase_C The C-t 99.9 6.3E-25 1.4E-29 205.6 12.1 172 63-248 1-178 (295)
16 PRK00074 guaA GMP synthase; Re 99.9 2.2E-24 4.7E-29 217.0 14.5 177 61-252 215-397 (511)
17 TIGR00420 trmU tRNA (5-methyla 99.9 1.1E-24 2.3E-29 209.5 10.9 189 62-260 1-212 (352)
18 TIGR00884 guaA_Cterm GMP synth 99.9 7.8E-24 1.7E-28 200.0 15.5 177 40-239 2-181 (311)
19 cd01990 Alpha_ANH_like_I This 99.9 5.1E-24 1.1E-28 190.4 13.4 150 64-243 1-152 (202)
20 PRK14664 tRNA-specific 2-thiou 99.9 3E-24 6.6E-29 205.8 10.4 191 57-260 1-203 (362)
21 TIGR00268 conserved hypothetic 99.9 2.6E-23 5.7E-28 191.9 13.5 154 58-243 9-164 (252)
22 PRK00919 GMP synthase subunit 99.9 4.3E-23 9.4E-28 193.7 14.5 161 61-241 21-181 (307)
23 PRK08384 thiamine biosynthesis 99.9 5.8E-22 1.3E-26 191.3 15.6 152 62-239 181-340 (381)
24 PRK13820 argininosuccinate syn 99.9 1.2E-21 2.5E-26 189.4 17.4 160 61-249 2-174 (394)
25 PRK01269 tRNA s(4)U8 sulfurtra 99.9 6.8E-22 1.5E-26 198.0 15.6 188 62-277 178-375 (482)
26 PRK14561 hypothetical protein; 99.9 1.2E-21 2.6E-26 173.7 15.0 175 63-267 2-182 (194)
27 PF03054 tRNA_Me_trans: tRNA m 99.9 2.7E-23 5.9E-28 198.4 3.5 193 62-261 1-214 (356)
28 PRK05253 sulfate adenylyltrans 99.9 2.1E-21 4.5E-26 182.3 15.7 165 62-241 28-207 (301)
29 TIGR00269 conserved hypothetic 99.9 4.1E-22 9E-27 158.7 8.6 102 213-315 1-104 (104)
30 TIGR00342 thiazole biosynthesi 99.9 5.5E-21 1.2E-25 185.5 17.8 152 61-237 172-328 (371)
31 cd01713 PAPS_reductase This do 99.9 7.9E-22 1.7E-26 170.3 10.7 161 63-241 1-163 (173)
32 PRK08576 hypothetical protein; 99.9 1E-20 2.3E-25 184.9 19.1 203 37-269 214-430 (438)
33 COG0482 TrmU Predicted tRNA(5- 99.9 2.1E-21 4.6E-26 182.9 12.8 194 61-261 3-212 (356)
34 TIGR00552 nadE NAD+ synthetase 99.8 1.2E-20 2.6E-25 174.0 14.2 167 43-240 8-178 (250)
35 PRK00509 argininosuccinate syn 99.8 2.4E-20 5.2E-25 180.4 14.2 162 62-249 3-177 (399)
36 COG1606 ATP-utilizing enzymes 99.8 1.6E-19 3.5E-24 160.9 16.3 159 58-247 14-177 (269)
37 TIGR02039 CysD sulfate adenyly 99.8 9.1E-20 2E-24 169.8 15.1 166 63-241 21-199 (294)
38 TIGR00364 exsB protein. This p 99.8 3.7E-20 8.1E-25 165.3 12.0 166 64-248 1-187 (201)
39 cd01999 Argininosuccinate_Synt 99.8 1.9E-19 4.1E-24 174.1 14.5 161 64-249 1-174 (385)
40 PRK02090 phosphoadenosine phos 99.8 2.7E-19 5.9E-24 164.0 13.0 162 46-241 30-196 (241)
41 TIGR00032 argG argininosuccina 99.8 6.2E-19 1.3E-23 171.1 16.1 161 63-249 1-173 (394)
42 cd01995 ExsB ExsB is a transcr 99.8 5.1E-19 1.1E-23 153.6 13.5 143 63-248 1-149 (169)
43 PRK11106 queuosine biosynthesi 99.8 8.4E-19 1.8E-23 158.7 14.8 173 62-248 2-191 (231)
44 PRK01565 thiamine biosynthesis 99.8 1.1E-18 2.3E-23 170.9 15.4 152 61-237 176-332 (394)
45 PLN00200 argininosuccinate syn 99.8 7.1E-19 1.5E-23 170.4 13.1 162 62-249 6-181 (404)
46 PRK04527 argininosuccinate syn 99.8 1.6E-18 3.5E-23 167.1 12.3 162 61-249 2-178 (400)
47 TIGR03573 WbuX N-acetyl sugar 99.8 8.3E-18 1.8E-22 161.8 15.9 159 14-182 2-172 (343)
48 PF02568 ThiI: Thiamine biosyn 99.8 3.4E-18 7.4E-23 150.6 11.4 152 61-237 3-161 (197)
49 PRK12563 sulfate adenylyltrans 99.7 2E-17 4.4E-22 154.7 14.5 169 62-241 38-217 (312)
50 cd00553 NAD_synthase NAD+ synt 99.7 1.5E-17 3.3E-22 153.2 13.4 168 42-239 8-179 (248)
51 PF06508 QueC: Queuosine biosy 99.7 2.5E-17 5.3E-22 147.5 13.3 173 63-249 1-187 (209)
52 cd01986 Alpha_ANH_like Adenine 99.7 3.5E-17 7.7E-22 130.4 11.5 103 64-220 1-103 (103)
53 PRK13980 NAD synthetase; Provi 99.7 1E-16 2.2E-21 149.1 15.8 167 38-238 11-180 (265)
54 PLN02347 GMP synthetase 99.7 1.1E-16 2.3E-21 161.3 12.3 167 58-238 226-404 (536)
55 COG0603 Predicted PP-loop supe 99.7 3.8E-16 8.2E-21 138.4 12.8 169 62-249 3-190 (222)
56 KOG2805 tRNA (5-methylaminomet 99.7 1.3E-16 2.7E-21 145.4 8.8 195 59-261 3-221 (377)
57 cd01996 Alpha_ANH_like_III Thi 99.7 5.6E-16 1.2E-20 132.3 12.4 111 63-183 3-115 (154)
58 COG0519 GuaA GMP synthase, PP- 99.6 1E-14 2.2E-19 131.5 14.3 159 61-240 21-186 (315)
59 PRK08557 hypothetical protein; 99.6 5.2E-14 1.1E-18 137.6 17.8 182 61-268 181-378 (417)
60 PRK05370 argininosuccinate syn 99.6 1.6E-14 3.5E-19 139.6 13.9 167 58-249 8-194 (447)
61 PRK13795 hypothetical protein; 99.6 3.2E-14 6.9E-19 146.9 15.6 205 42-272 225-444 (636)
62 PF01507 PAPS_reduct: Phosphoa 99.6 6.7E-15 1.5E-19 127.7 8.6 154 63-240 1-156 (174)
63 PRK13794 hypothetical protein; 99.6 1.4E-13 3.1E-18 137.5 18.2 205 42-272 229-448 (479)
64 TIGR00434 cysH phosophoadenyly 99.5 6.2E-14 1.3E-18 126.2 13.0 162 48-240 5-170 (212)
65 TIGR02057 PAPS_reductase phosp 99.5 2.1E-13 4.7E-18 123.6 16.6 158 61-241 25-186 (226)
66 PF02540 NAD_synthase: NAD syn 99.5 1.2E-13 2.7E-18 126.4 13.6 168 42-239 3-170 (242)
67 COG0301 ThiI Thiamine biosynth 99.5 3E-13 6.6E-18 129.4 15.6 152 62-238 176-333 (383)
68 COG0137 ArgG Argininosuccinate 99.5 4.5E-13 9.8E-18 126.3 16.0 165 60-249 3-179 (403)
69 cd01994 Alpha_ANH_like_IV This 99.5 6.6E-13 1.4E-17 117.7 15.6 138 63-241 1-142 (194)
70 PF00764 Arginosuc_synth: Argi 99.5 1.6E-13 3.5E-18 132.0 12.3 160 65-249 1-172 (388)
71 PRK02628 nadE NAD synthetase; 99.5 9.8E-13 2.1E-17 137.2 16.1 154 60-235 360-521 (679)
72 COG0175 CysH 3'-phosphoadenosi 99.5 2.7E-13 5.8E-18 125.6 10.6 155 63-241 41-198 (261)
73 PTZ00323 NAD+ synthase; Provis 99.4 1.3E-11 2.8E-16 115.7 17.7 180 34-238 23-211 (294)
74 TIGR03679 arCOG00187 arCOG0018 99.4 8.7E-12 1.9E-16 112.6 13.8 136 65-241 1-140 (218)
75 PRK00876 nadE NAD synthetase; 99.3 4.3E-11 9.3E-16 113.6 17.4 170 39-238 14-237 (326)
76 PF10288 DUF2392: Protein of u 99.3 2.5E-12 5.3E-17 103.1 7.5 97 183-280 1-107 (107)
77 COG2117 Predicted subunit of t 99.3 3E-11 6.4E-16 100.6 11.5 177 63-267 2-184 (198)
78 PRK00768 nadE NAD synthetase; 99.2 2.6E-10 5.7E-15 105.2 14.0 170 40-238 21-200 (268)
79 PRK13981 NAD synthetase; Provi 99.2 2.8E-10 6.1E-15 116.3 14.5 167 39-236 262-433 (540)
80 cd01984 AANH_like Adenine nucl 99.1 1.9E-10 4E-15 88.3 7.9 68 64-190 1-68 (86)
81 TIGR03183 DNA_S_dndC putative 99.1 2.1E-09 4.5E-14 105.9 16.7 173 61-240 13-205 (447)
82 COG1365 Predicted ATPase (PP-l 99.1 2.7E-09 5.8E-14 93.0 14.2 147 62-246 61-212 (255)
83 cd01991 Asn_Synthase_B_C The C 99.1 5.2E-10 1.1E-14 104.0 10.3 118 58-184 12-130 (269)
84 COG0171 NadE NAD synthase [Coe 99.1 2.5E-09 5.5E-14 98.6 13.9 156 61-238 25-185 (268)
85 PRK06850 hypothetical protein; 99.1 1E-08 2.2E-13 102.2 18.5 170 61-239 34-223 (507)
86 PF00733 Asn_synthase: Asparag 99.0 2.7E-09 5.9E-14 97.8 12.5 132 44-184 2-134 (255)
87 TIGR02055 APS_reductase thiore 99.0 2.9E-09 6.4E-14 94.2 11.3 144 71-241 2-150 (191)
88 TIGR01536 asn_synth_AEB aspara 99.0 3.7E-09 8.1E-14 106.2 13.2 134 41-183 235-369 (467)
89 TIGR00424 APS_reduc 5'-adenyly 99.0 8.1E-09 1.8E-13 102.3 15.1 160 61-241 115-281 (463)
90 PLN02309 5'-adenylylsulfate re 99.0 1E-08 2.2E-13 101.6 15.7 159 61-241 110-276 (457)
91 KOG1706 Argininosuccinate synt 99.0 5.2E-09 1.1E-13 95.8 11.6 162 60-248 4-182 (412)
92 KOG1622 GMP synthase [Nucleoti 99.0 4.5E-10 9.7E-15 107.4 4.6 178 44-241 213-408 (552)
93 TIGR00289 conserved hypothetic 98.8 1.5E-07 3.2E-12 84.9 15.6 133 63-241 2-138 (222)
94 COG3969 Predicted phosphoadeno 98.6 2.5E-06 5.5E-11 79.6 16.8 194 35-239 7-232 (407)
95 TIGR00290 MJ0570_dom MJ0570-re 98.6 1.9E-06 4E-11 77.8 14.8 134 63-241 2-139 (223)
96 COG2102 Predicted ATPases of P 98.5 3.3E-06 7.2E-11 74.9 13.6 135 63-241 2-140 (223)
97 PF01902 ATP_bind_4: ATP-bindi 98.5 1.5E-06 3.3E-11 78.2 11.8 136 63-241 2-139 (218)
98 PLN02549 asparagine synthase ( 98.5 2.3E-06 4.9E-11 87.9 13.5 135 43-183 209-348 (578)
99 PTZ00077 asparagine synthetase 98.4 3.2E-06 7E-11 87.0 13.0 137 41-183 219-362 (586)
100 PRK09431 asnB asparagine synth 98.4 5.7E-06 1.2E-10 84.7 13.4 138 41-184 209-355 (554)
101 TIGR03108 eps_aminotran_1 exos 98.2 1E-05 2.2E-10 84.5 11.9 131 42-184 241-371 (628)
102 PLN02339 NAD+ synthase (glutam 98.1 5E-05 1.1E-09 79.8 15.2 73 60-134 347-451 (700)
103 TIGR03104 trio_amidotrans aspa 98.1 2.3E-05 5E-10 81.0 12.1 132 42-183 243-376 (589)
104 COG0367 AsnB Asparagine syntha 98.0 5E-05 1.1E-09 77.6 12.7 134 40-184 211-346 (542)
105 KOG0571 Asparagine synthase (g 97.7 0.00026 5.7E-09 68.2 9.6 129 45-183 211-346 (543)
106 PF02677 DUF208: Uncharacteriz 97.4 0.00052 1.1E-08 59.3 7.6 101 65-177 2-111 (176)
107 COG1636 Uncharacterized protei 97.0 0.0036 7.9E-08 54.1 8.1 105 61-176 3-116 (204)
108 cd01987 USP_OKCHK USP domain i 96.9 0.015 3.3E-07 46.9 10.5 102 63-195 1-106 (124)
109 KOG0189 Phosphoadenosine phosp 96.8 0.015 3.2E-07 51.1 10.4 152 61-240 46-205 (261)
110 cd01988 Na_H_Antiporter_C The 96.1 0.081 1.8E-06 42.7 10.6 95 63-182 1-106 (132)
111 PRK10490 sensor protein KdpD; 95.9 0.082 1.8E-06 57.7 12.2 96 59-181 248-347 (895)
112 KOG2316 Predicted ATPase (PP-l 95.8 0.19 4.2E-06 44.7 12.0 139 63-238 2-158 (277)
113 cd00293 USP_Like Usp: Universa 95.7 0.14 3E-06 40.6 10.2 94 63-182 1-105 (130)
114 COG2205 KdpD Osmosensitive K+ 95.7 0.17 3.7E-06 53.3 12.7 96 61-183 248-347 (890)
115 PRK09982 universal stress prot 95.5 0.3 6.6E-06 40.5 11.7 39 62-102 4-42 (142)
116 PRK15118 universal stress glob 95.1 0.31 6.8E-06 40.3 10.5 95 62-181 4-114 (144)
117 cd01989 STK_N The N-terminal d 95.0 0.25 5.4E-06 40.9 9.8 37 63-101 1-37 (146)
118 cd05565 PTS_IIB_lactose PTS_II 94.9 0.081 1.8E-06 41.5 6.0 69 63-131 2-81 (99)
119 PRK10116 universal stress prot 93.9 1.9 4E-05 35.3 12.7 101 62-187 4-119 (142)
120 KOG0573 Asparagine synthase [A 93.3 0.19 4.1E-06 49.4 6.1 58 62-122 251-316 (520)
121 PRK15005 universal stress prot 92.9 1 2.2E-05 37.0 9.5 38 62-101 3-42 (144)
122 TIGR00853 pts-lac PTS system, 91.4 0.64 1.4E-05 36.1 6.0 70 62-131 4-84 (95)
123 PF00582 Usp: Universal stress 91.1 0.88 1.9E-05 36.2 6.9 40 62-103 3-42 (140)
124 PRK15456 universal stress prot 90.7 5 0.00011 32.9 11.2 38 62-102 3-42 (142)
125 PRK09590 celB cellobiose phosp 90.4 0.78 1.7E-05 36.3 5.7 79 63-142 3-97 (104)
126 COG1440 CelA Phosphotransferas 89.2 1.3 2.7E-05 34.8 5.7 70 62-131 2-82 (102)
127 cd05564 PTS_IIB_chitobiose_lic 88.5 1.8 3.8E-05 33.7 6.3 70 63-132 1-81 (96)
128 PTZ00218 40S ribosomal protein 88.0 0.52 1.1E-05 32.4 2.6 31 13-45 16-46 (54)
129 PF02132 RecR: RecR protein; 87.0 0.43 9.4E-06 31.0 1.7 21 290-310 16-36 (41)
130 KOG2303 Predicted NAD synthase 85.3 5.5 0.00012 39.9 9.0 70 62-131 350-448 (706)
131 PRK12652 putative monovalent c 85.1 17 0.00037 35.3 12.4 104 61-181 5-124 (357)
132 PRK11175 universal stress prot 85.1 15 0.00032 34.3 11.9 133 25-181 110-272 (305)
133 COG0541 Ffh Signal recognition 84.5 34 0.00075 34.0 14.1 85 37-128 71-161 (451)
134 COG0788 PurU Formyltetrahydrof 84.0 20 0.00044 33.2 11.4 88 60-180 89-176 (287)
135 KOG3425 Uncharacterized conser 83.6 5.7 0.00012 32.2 6.8 57 45-106 12-78 (128)
136 PRK11175 universal stress prot 82.2 19 0.00041 33.6 11.3 36 62-99 4-39 (305)
137 PRK13010 purU formyltetrahydro 81.8 28 0.0006 32.9 12.0 94 61-187 93-186 (289)
138 PRK06027 purU formyltetrahydro 79.8 34 0.00074 32.2 11.9 90 60-182 88-177 (286)
139 TIGR00655 PurU formyltetrahydr 76.8 61 0.0013 30.4 12.6 94 61-187 84-177 (280)
140 PF00448 SRP54: SRP54-type pro 76.7 28 0.0006 30.7 9.9 60 64-130 5-64 (196)
141 PRK00076 recR recombination pr 75.1 3.2 7E-05 36.7 3.4 21 290-310 52-72 (196)
142 PRK10499 PTS system N,N'-diace 75.1 7.9 0.00017 30.7 5.3 40 62-101 4-43 (106)
143 PRK11070 ssDNA exonuclease Rec 74.3 52 0.0011 34.2 12.4 95 58-181 66-162 (575)
144 PRK13011 formyltetrahydrofolat 74.0 33 0.00071 32.3 10.1 95 60-187 88-182 (286)
145 PRK13844 recombination protein 73.7 3.7 8E-05 36.4 3.4 22 290-311 56-77 (200)
146 TIGR00615 recR recombination p 72.6 4.1 8.8E-05 36.0 3.4 22 290-311 52-73 (195)
147 KOG2644 3'-phosphoadenosine 5' 72.4 3.9 8.4E-05 38.0 3.3 29 212-241 202-230 (282)
148 PRK08305 spoVFB dipicolinate s 70.3 10 0.00022 33.6 5.4 36 60-98 4-40 (196)
149 PRK05647 purN phosphoribosylgl 70.3 53 0.0011 29.1 10.1 58 62-130 2-59 (200)
150 COG1066 Sms Predicted ATP-depe 70.2 28 0.00061 34.5 8.7 108 61-183 93-223 (456)
151 PTZ00285 glucosamine-6-phospha 70.0 82 0.0018 28.9 11.7 82 43-125 15-101 (253)
152 PF04748 Polysacc_deac_2: Dive 69.4 29 0.00062 31.1 8.2 113 42-185 74-189 (213)
153 PF02441 Flavoprotein: Flavopr 69.4 8.2 0.00018 31.5 4.4 46 62-118 1-46 (129)
154 PF08271 TF_Zn_Ribbon: TFIIB z 68.2 2.1 4.6E-05 27.9 0.5 25 14-39 1-25 (43)
155 COG0199 RpsN Ribosomal protein 67.2 5 0.00011 28.4 2.2 28 13-44 21-48 (61)
156 COG2861 Uncharacterized protei 66.6 74 0.0016 29.1 10.1 117 42-190 106-225 (250)
157 PF00412 LIM: LIM domain; Int 65.4 3.5 7.6E-05 28.2 1.2 30 15-44 28-58 (58)
158 cd01523 RHOD_Lact_B Member of 65.2 11 0.00024 28.8 4.2 39 58-104 58-96 (100)
159 PF02302 PTS_IIB: PTS system, 65.0 20 0.00043 26.8 5.5 36 63-100 1-37 (90)
160 COG0794 GutQ Predicted sugar p 64.7 16 0.00034 32.5 5.4 42 57-102 83-124 (202)
161 PRK10867 signal recognition pa 64.1 73 0.0016 31.9 10.6 84 39-128 73-162 (433)
162 PF01012 ETF: Electron transfe 64.0 88 0.0019 26.3 10.3 88 72-183 15-103 (164)
163 PRK05920 aromatic acid decarbo 63.8 15 0.00033 32.8 5.2 35 61-98 3-37 (204)
164 TIGR00421 ubiX_pad polyprenyl 62.5 12 0.00027 32.6 4.3 33 63-98 1-33 (181)
165 TIGR00502 nagB glucosamine-6-p 61.5 1.3E+02 0.0029 27.5 11.8 60 43-103 15-75 (259)
166 PRK07313 phosphopantothenoylcy 61.3 17 0.00038 31.7 5.1 34 62-98 2-35 (182)
167 COG0552 FtsY Signal recognitio 61.0 90 0.002 30.1 10.1 58 64-128 143-200 (340)
168 PF06342 DUF1057: Alpha/beta h 60.5 79 0.0017 29.8 9.4 73 101-183 42-116 (297)
169 PRK09722 allulose-6-phosphate 60.4 1.3E+02 0.0029 27.2 11.3 95 47-178 99-198 (229)
170 TIGR02113 coaC_strep phosphopa 60.0 18 0.00038 31.5 4.9 34 62-98 1-34 (177)
171 cd01399 GlcN6P_deaminase GlcN6 59.9 65 0.0014 28.7 8.8 67 62-128 19-90 (232)
172 CHL00073 chlN photochlorophyll 58.0 71 0.0015 32.2 9.3 75 45-127 298-373 (457)
173 PRK05766 rps14P 30S ribosomal 57.3 14 0.00029 25.4 2.9 29 14-44 15-43 (52)
174 PRK06029 3-octaprenyl-4-hydrox 56.7 22 0.00047 31.2 4.9 35 62-98 2-36 (185)
175 PF00070 Pyr_redox: Pyridine n 56.4 73 0.0016 23.1 7.2 56 66-127 3-59 (80)
176 TIGR00639 PurN phosphoribosylg 56.1 1.2E+02 0.0025 26.7 9.5 89 63-181 2-90 (190)
177 PF13248 zf-ribbon_3: zinc-rib 56.1 6.7 0.00015 22.6 1.1 22 12-39 1-22 (26)
178 COG0560 SerB Phosphoserine pho 53.7 47 0.001 29.6 6.7 74 91-184 93-174 (212)
179 PF03853 YjeF_N: YjeF-related 53.4 1.4E+02 0.0031 25.4 10.7 77 43-127 7-86 (169)
180 PRK11889 flhF flagellar biosyn 50.5 2.5E+02 0.0054 28.1 11.4 58 64-128 245-302 (436)
181 TIGR00521 coaBC_dfp phosphopan 50.0 30 0.00064 34.1 5.2 36 60-98 2-37 (390)
182 cd01520 RHOD_YbbB Member of th 50.0 50 0.0011 26.6 5.8 38 58-103 83-121 (128)
183 COG0608 RecJ Single-stranded D 49.9 2.8E+02 0.006 28.2 12.4 89 58-179 33-122 (491)
184 PRK14974 cell division protein 49.5 1.9E+02 0.0041 27.9 10.5 56 65-127 145-200 (336)
185 TIGR01425 SRP54_euk signal rec 49.5 1.3E+02 0.0028 30.1 9.6 58 64-128 104-161 (429)
186 PLN02828 formyltetrahydrofolat 49.5 2.1E+02 0.0045 26.7 10.4 64 60-131 69-132 (268)
187 PRK08883 ribulose-phosphate 3- 48.5 2E+02 0.0044 25.8 10.9 95 47-178 97-196 (220)
188 TIGR03826 YvyF flagellar opero 47.3 17 0.00038 30.2 2.6 36 15-55 5-42 (137)
189 PRK12723 flagellar biosynthesi 47.3 1.6E+02 0.0034 29.1 9.7 63 64-130 178-241 (388)
190 KOG0780 Signal recognition par 47.1 2.2E+02 0.0048 28.3 10.3 120 64-190 105-239 (483)
191 TIGR00959 ffh signal recogniti 47.0 3.1E+02 0.0067 27.4 12.9 85 38-128 71-161 (428)
192 cd01400 6PGL 6PGL: 6-Phosphogl 46.6 54 0.0012 29.3 6.0 73 43-124 10-86 (219)
193 PRK08359 transcription factor; 45.8 19 0.0004 31.4 2.7 36 8-43 1-40 (176)
194 PF03848 TehB: Tellurite resis 45.6 1.2E+02 0.0025 26.9 7.7 65 45-129 19-83 (192)
195 PLN02331 phosphoribosylglycina 45.4 1.9E+02 0.0042 25.7 9.2 89 63-181 1-89 (207)
196 cd01534 4RHOD_Repeat_3 Member 44.3 34 0.00073 25.8 3.8 35 61-103 56-90 (95)
197 PF14471 DUF4428: Domain of un 44.3 15 0.00032 25.0 1.5 28 15-43 1-30 (51)
198 PRK07667 uridine kinase; Provi 44.2 62 0.0013 28.2 5.9 39 61-101 15-55 (193)
199 PF01182 Glucosamine_iso: Gluc 44.2 46 0.001 29.3 5.1 54 43-103 8-62 (199)
200 PF13580 SIS_2: SIS domain; PD 43.6 66 0.0014 26.4 5.7 37 58-98 101-137 (138)
201 cd00945 Aldolase_Class_I Class 43.5 1.9E+02 0.0041 24.5 8.9 65 62-132 49-123 (201)
202 PRK00443 nagB glucosamine-6-ph 43.2 2.6E+02 0.0056 25.4 12.3 68 61-128 32-104 (261)
203 PRK05579 bifunctional phosphop 43.1 43 0.00093 33.1 5.1 36 60-98 5-40 (399)
204 COG0353 RecR Recombinational D 43.0 22 0.00048 31.3 2.7 21 290-310 53-73 (198)
205 KOG2862 Alanine-glyoxylate ami 42.9 2.3E+02 0.0049 27.3 9.4 41 57-104 88-128 (385)
206 TIGR03278 methan_mark_10 putat 42.5 3.5E+02 0.0076 26.8 14.2 61 64-132 75-138 (404)
207 COG1998 RPS31 Ribosomal protei 42.5 8.7 0.00019 25.9 0.1 26 14-41 20-45 (51)
208 cd01965 Nitrogenase_MoFe_beta_ 42.3 2.5E+02 0.0054 27.8 10.5 59 60-130 298-357 (428)
209 PF11781 RRN7: RNA polymerase 42.2 17 0.00037 22.8 1.4 24 13-39 8-31 (36)
210 PF06827 zf-FPG_IleRS: Zinc fi 42.1 8.2 0.00018 22.9 -0.1 27 14-40 2-28 (30)
211 TIGR03884 sel_bind_Methan sele 41.8 74 0.0016 23.5 4.8 37 122-175 11-47 (74)
212 PF00142 Fer4_NifH: 4Fe-4S iro 40.9 1.8E+02 0.004 27.1 8.5 64 62-128 143-208 (273)
213 cd01976 Nitrogenase_MoFe_alpha 40.9 3.5E+02 0.0077 26.8 11.3 48 45-99 284-331 (421)
214 PLN02360 probable 6-phosphoglu 40.7 88 0.0019 29.0 6.6 43 60-103 40-83 (268)
215 COG0452 Dfp Phosphopantothenoy 40.7 44 0.00096 33.0 4.8 38 61-101 4-41 (392)
216 cd01529 4RHOD_Repeats Member o 40.7 33 0.00072 25.9 3.2 39 58-103 53-91 (96)
217 PRK00771 signal recognition pa 40.1 2.4E+02 0.0051 28.3 9.9 58 64-128 99-156 (437)
218 cd01524 RHOD_Pyr_redox Member 39.2 44 0.00096 24.8 3.7 39 58-104 48-86 (90)
219 cd00458 SugarP_isomerase Sugar 39.0 2.4E+02 0.0053 23.9 10.9 76 43-126 7-86 (169)
220 PRK12724 flagellar biosynthesi 38.8 2.5E+02 0.0053 28.2 9.6 58 65-128 228-285 (432)
221 TIGR02852 spore_dpaB dipicolin 38.6 60 0.0013 28.5 4.8 36 63-101 2-38 (187)
222 PRK13982 bifunctional SbtC-lik 38.6 54 0.0012 33.3 5.0 35 61-98 70-104 (475)
223 PRK06696 uridine kinase; Valid 38.4 1E+02 0.0023 27.4 6.6 40 60-101 19-60 (223)
224 PRK12358 putative 6-phosphoglu 38.3 3E+02 0.0066 24.8 9.8 41 61-101 27-67 (239)
225 PF13941 MutL: MutL protein 38.3 1.5E+02 0.0032 30.0 8.0 56 65-129 127-185 (457)
226 PF01041 DegT_DnrJ_EryC1: DegT 37.2 1.7E+02 0.0038 28.0 8.4 114 40-175 26-145 (363)
227 PRK12726 flagellar biosynthesi 37.2 2.1E+02 0.0046 28.3 8.7 58 64-128 210-267 (407)
228 PF00563 EAL: EAL domain; Int 36.5 2.9E+02 0.0062 24.0 11.8 31 157-187 190-220 (236)
229 PLN02565 cysteine synthase 36.2 3.1E+02 0.0068 26.1 9.8 61 55-129 60-120 (322)
230 COG1499 NMD3 NMD protein affec 36.1 21 0.00045 34.7 1.6 28 10-42 3-30 (355)
231 COG4586 ABC-type uncharacteriz 36.1 96 0.0021 29.3 5.8 31 155-185 192-222 (325)
232 cd02334 ZZ_dystrophin Zinc fin 36.0 25 0.00055 23.7 1.6 29 15-44 2-35 (49)
233 COG1348 NifH Nitrogenase subun 35.8 2.2E+02 0.0047 26.3 7.8 64 62-128 144-209 (278)
234 KOG0081 GTPase Rab27, small G 35.6 69 0.0015 27.5 4.4 25 219-244 139-163 (219)
235 TIGR01284 alt_nitrog_alph nitr 35.0 4.6E+02 0.0099 26.4 11.1 49 47-102 311-360 (457)
236 KOG3506 40S ribosomal protein 35.0 17 0.00037 25.0 0.6 30 13-44 18-47 (56)
237 TIGR03190 benz_CoA_bzdN benzoy 35.0 4.4E+02 0.0095 25.7 15.3 139 60-264 226-373 (377)
238 PRK10310 PTS system galactitol 34.8 1.1E+02 0.0023 23.5 5.2 35 63-99 4-39 (94)
239 PF00578 AhpC-TSA: AhpC/TSA fa 34.8 2.1E+02 0.0046 22.0 7.7 61 60-129 24-88 (124)
240 PRK08227 autoinducer 2 aldolas 34.7 3.8E+02 0.0082 24.9 10.7 98 62-180 75-181 (264)
241 PF10281 Ish1: Putative stress 34.2 99 0.0021 19.3 4.1 22 221-243 3-24 (38)
242 COG3598 RepA RecA-family ATPas 34.0 3.8E+02 0.0083 26.0 9.5 65 58-124 86-156 (402)
243 PF00643 zf-B_box: B-box zinc 33.7 45 0.00098 21.0 2.5 30 13-42 3-32 (42)
244 PRK08745 ribulose-phosphate 3- 33.7 3.6E+02 0.0078 24.3 11.2 95 47-178 101-200 (223)
245 PRK06852 aldolase; Validated 33.4 2.9E+02 0.0063 26.3 8.8 102 62-179 93-210 (304)
246 KOG3125 Thymidine kinase [Nucl 33.2 64 0.0014 28.7 4.0 42 91-134 102-143 (234)
247 PRK08061 rpsN 30S ribosomal pr 33.2 54 0.0012 23.3 2.9 26 15-44 23-48 (61)
248 PF00569 ZZ: Zinc finger, ZZ t 32.8 29 0.00064 22.8 1.5 29 13-42 4-37 (46)
249 PF09889 DUF2116: Uncharacteri 32.5 22 0.00048 25.0 0.9 20 292-311 4-26 (59)
250 PF07745 Glyco_hydro_53: Glyco 32.4 4.2E+02 0.0092 25.5 9.9 79 49-131 160-238 (332)
251 cd06259 YdcF-like YdcF-like. Y 32.4 1.1E+02 0.0024 25.1 5.4 75 42-126 17-98 (150)
252 cd01518 RHOD_YceA Member of th 32.2 53 0.0011 25.0 3.1 38 59-103 59-96 (101)
253 TIGR02700 flavo_MJ0208 archaeo 32.2 81 0.0018 28.6 4.8 35 63-98 1-36 (234)
254 TIGR03499 FlhF flagellar biosy 32.1 3.9E+02 0.0085 24.8 9.6 60 64-128 198-257 (282)
255 PF13905 Thioredoxin_8: Thiore 31.9 2.1E+02 0.0045 21.0 7.9 52 72-131 14-67 (95)
256 PTZ00372 endonuclease 4-like p 31.8 5.3E+02 0.012 25.7 11.6 99 64-179 135-242 (413)
257 cd06450 DOPA_deC_like DOPA dec 31.7 4.3E+02 0.0093 24.6 10.4 131 42-180 37-188 (345)
258 cd01527 RHOD_YgaP Member of th 31.5 83 0.0018 23.7 4.2 39 58-103 51-89 (99)
259 PRK05439 pantothenate kinase; 31.4 79 0.0017 30.2 4.7 43 60-102 83-127 (311)
260 PLN02428 lipoic acid synthase 31.4 2.6E+02 0.0055 27.2 8.2 22 157-178 301-322 (349)
261 PRK02122 glucosamine-6-phospha 31.1 2.7E+02 0.0058 29.6 9.0 61 41-103 40-101 (652)
262 cd02338 ZZ_PCMF_like Zinc fing 31.1 32 0.0007 23.0 1.5 29 15-44 2-35 (49)
263 PF12251 zf-SNAP50_C: snRNA-ac 30.9 54 0.0012 29.0 3.3 31 13-43 139-175 (196)
264 KOG4080 Mitochondrial ribosoma 30.8 1.1E+02 0.0025 26.2 4.9 56 13-75 93-153 (176)
265 TIGR03301 PhnW-AepZ 2-aminoeth 30.6 4.5E+02 0.0097 24.5 12.3 122 43-177 31-162 (355)
266 PRK10834 vancomycin high tempe 30.5 3.1E+02 0.0068 25.1 8.2 69 111-179 99-170 (239)
267 TIGR03167 tRNA_sel_U_synt tRNA 30.4 3E+02 0.0066 26.2 8.5 36 61-104 74-110 (311)
268 PF11019 DUF2608: Protein of u 30.0 2E+02 0.0043 26.5 7.0 55 66-131 155-211 (252)
269 PF13660 DUF4147: Domain of un 29.7 47 0.001 30.4 2.8 29 46-77 104-132 (238)
270 KOG0098 GTPase Rab2, small G p 29.7 76 0.0016 28.1 3.8 43 221-264 128-173 (216)
271 cd01444 GlpE_ST GlpE sulfurtra 29.7 74 0.0016 23.6 3.5 38 58-103 53-91 (96)
272 COG2179 Predicted hydrolase of 29.6 1.2E+02 0.0026 26.3 4.9 57 60-128 34-90 (175)
273 KOG1710 MYND Zn-finger and ank 29.5 1.3E+02 0.0028 28.5 5.5 25 290-314 318-342 (396)
274 PF02879 PGM_PMM_II: Phosphogl 29.5 2.4E+02 0.0052 21.5 6.6 62 61-128 21-89 (104)
275 COG1341 Predicted GTPase or GT 29.4 87 0.0019 30.9 4.7 43 61-106 71-116 (398)
276 TIGR02477 PFKA_PPi diphosphate 29.3 6.6E+02 0.014 26.0 13.8 55 44-104 149-205 (539)
277 cd03466 Nitrogenase_NifN_2 Nit 29.2 5.8E+02 0.012 25.3 12.1 59 60-130 299-358 (429)
278 TIGR03826 YvyF flagellar opero 29.2 88 0.0019 26.0 4.1 21 291-311 81-102 (137)
279 PRK09762 galactosamine-6-phosp 28.8 1.8E+02 0.0038 26.3 6.4 41 62-102 28-69 (232)
280 TIGR01282 nifD nitrogenase mol 28.5 6.2E+02 0.014 25.5 11.3 46 47-99 321-366 (466)
281 PF13519 VWA_2: von Willebrand 28.3 2.3E+02 0.005 23.0 6.7 61 60-128 98-158 (172)
282 TIGR01198 pgl 6-phosphoglucono 28.2 1.5E+02 0.0032 26.8 5.8 74 43-126 15-92 (233)
283 PRK14478 nitrogenase molybdenu 28.1 6.3E+02 0.014 25.5 10.9 49 46-102 309-358 (475)
284 PF10764 Gin: Inhibitor of sig 27.9 24 0.00052 23.5 0.4 28 15-43 1-28 (46)
285 PF13240 zinc_ribbon_2: zinc-r 27.9 41 0.00088 18.8 1.3 19 15-39 1-19 (23)
286 PHA00626 hypothetical protein 27.8 16 0.00034 25.4 -0.5 34 14-48 1-38 (59)
287 COG0622 Predicted phosphoester 27.8 61 0.0013 28.1 3.0 25 159-183 98-122 (172)
288 PF07796 DUF1638: Protein of u 27.8 1.2E+02 0.0027 25.7 5.0 36 95-131 120-155 (166)
289 TIGR00064 ftsY signal recognit 27.8 4.9E+02 0.011 24.1 9.7 56 65-127 77-132 (272)
290 cd00158 RHOD Rhodanese Homolog 27.6 1.6E+02 0.0036 20.9 5.1 40 58-104 47-86 (89)
291 cd03012 TlpA_like_DipZ_like Tl 27.6 3.1E+02 0.0066 21.6 8.0 65 61-128 23-90 (126)
292 TIGR02699 archaeo_AfpA archaeo 27.2 1.2E+02 0.0025 26.4 4.7 34 63-98 1-35 (174)
293 PF09670 Cas_Cas02710: CRISPR- 27.1 1.6E+02 0.0035 28.8 6.2 40 44-84 54-93 (379)
294 cd02342 ZZ_UBA_plant Zinc fing 26.9 42 0.00092 22.0 1.4 28 15-43 2-34 (43)
295 PLN02496 probable phosphopanto 26.8 1.2E+02 0.0025 27.2 4.7 35 60-98 18-52 (209)
296 PF01861 DUF43: Protein of unk 26.8 86 0.0019 28.7 3.9 70 44-130 30-99 (243)
297 COG0589 UspA Universal stress 26.7 3.2E+02 0.007 21.5 12.4 97 60-180 4-123 (154)
298 smart00450 RHOD Rhodanese Homo 26.6 1.7E+02 0.0038 21.1 5.2 39 58-103 53-91 (100)
299 cd00950 DHDPS Dihydrodipicolin 26.5 3.1E+02 0.0067 25.3 7.8 75 62-142 70-148 (284)
300 PF06689 zf-C4_ClpX: ClpX C4-t 26.4 70 0.0015 20.6 2.4 29 14-42 2-33 (41)
301 cd01460 vWA_midasin VWA_Midasi 26.4 5.3E+02 0.011 24.0 9.3 63 63-128 166-241 (266)
302 PF03660 PHF5: PHF5-like prote 26.3 36 0.00078 26.7 1.2 39 290-328 54-96 (106)
303 COG0299 PurN Folate-dependent 26.3 4.7E+02 0.01 23.3 11.0 98 63-190 2-99 (200)
304 PF07905 PucR: Purine cataboli 26.1 2.5E+02 0.0054 22.5 6.2 70 58-134 40-111 (123)
305 KOG0781 Signal recognition par 25.8 4.4E+02 0.0096 26.9 8.8 36 64-102 382-417 (587)
306 PF02542 YgbB: YgbB family; I 25.7 2.5E+02 0.0054 24.0 6.2 69 69-141 68-140 (157)
307 PF12760 Zn_Tnp_IS1595: Transp 25.6 32 0.00068 22.6 0.7 26 13-39 18-43 (46)
308 TIGR01031 rpmF_bact ribosomal 25.6 36 0.00079 23.5 1.0 24 288-311 23-47 (55)
309 TIGR01319 glmL_fam conserved h 25.3 1.9E+02 0.0042 29.1 6.3 56 65-129 123-181 (463)
310 PF13923 zf-C3HC4_2: Zinc fing 25.1 1E+02 0.0022 19.1 3.0 31 16-46 1-32 (39)
311 cd01533 4RHOD_Repeat_2 Member 25.0 1.1E+02 0.0025 23.5 4.0 38 60-103 65-102 (109)
312 PRK11784 tRNA 2-selenouridine 24.9 3.6E+02 0.0078 26.1 8.1 39 60-106 87-126 (345)
313 cd01449 TST_Repeat_2 Thiosulfa 24.8 1.4E+02 0.0029 23.2 4.4 37 47-84 65-101 (118)
314 PRK08526 threonine dehydratase 24.8 5.1E+02 0.011 25.5 9.3 66 59-130 293-359 (403)
315 PF01297 TroA: Periplasmic sol 24.7 5.2E+02 0.011 23.3 12.0 78 63-177 151-229 (256)
316 PF00320 GATA: GATA zinc finge 24.7 75 0.0016 19.7 2.2 30 16-45 1-32 (36)
317 PF15609 PRTase_2: Phosphoribo 24.7 3.7E+02 0.008 23.7 7.3 56 68-130 131-186 (191)
318 COG0245 IspF 2C-methyl-D-eryth 24.5 3.2E+02 0.007 23.3 6.6 64 67-132 66-131 (159)
319 PF01268 FTHFS: Formate--tetra 24.5 1.9E+02 0.0042 29.8 6.2 104 79-184 359-472 (557)
320 COG4855 Uncharacterized protei 24.4 26 0.00056 25.2 0.1 31 11-41 5-39 (76)
321 PRK03170 dihydrodipicolinate s 24.3 3.3E+02 0.0072 25.3 7.6 75 62-142 71-149 (292)
322 PF13167 GTP-bdg_N: GTP-bindin 24.1 3.4E+02 0.0074 21.0 8.2 72 108-191 7-78 (95)
323 PLN02759 Formate--tetrahydrofo 24.0 4.5E+02 0.0097 27.6 8.7 93 90-184 449-551 (637)
324 cd02345 ZZ_dah Zinc finger, ZZ 23.9 55 0.0012 21.9 1.6 28 15-43 2-34 (49)
325 PRK12286 rpmF 50S ribosomal pr 23.8 42 0.00091 23.4 1.0 24 288-311 24-48 (57)
326 cd01967 Nitrogenase_MoFe_alpha 23.7 2.1E+02 0.0046 28.0 6.4 54 41-101 266-319 (406)
327 cd00202 ZnF_GATA Zinc finger D 23.6 75 0.0016 21.8 2.3 33 15-47 1-35 (54)
328 PTZ00293 thymidine kinase; Pro 23.5 29 0.00063 31.1 0.2 27 14-41 138-177 (211)
329 smart00504 Ubox Modified RING 23.3 91 0.002 21.3 2.8 31 15-46 3-34 (63)
330 PRK06395 phosphoribosylamine-- 23.2 5.2E+02 0.011 25.7 9.2 62 63-131 4-74 (435)
331 COG2403 Predicted GTPase [Gene 23.2 7.4E+02 0.016 24.5 10.0 69 59-132 4-92 (449)
332 KOG4286 Dystrophin-like protei 23.1 37 0.00079 36.0 0.9 29 14-43 604-637 (966)
333 cd01447 Polysulfide_ST Polysul 22.8 99 0.0021 23.2 3.2 38 58-103 58-96 (103)
334 PRK05481 lipoyl synthase; Prov 22.8 4.4E+02 0.0094 24.7 8.0 75 91-179 195-272 (289)
335 PRK09437 bcp thioredoxin-depen 22.8 3.4E+02 0.0073 22.2 6.7 59 61-128 30-92 (154)
336 PF01156 IU_nuc_hydro: Inosine 22.7 4.4E+02 0.0096 24.6 8.2 60 63-128 3-66 (312)
337 PF00148 Oxidored_nitro: Nitro 22.5 2.6E+02 0.0056 27.2 6.7 65 45-121 255-320 (398)
338 PRK12928 lipoyl synthase; Prov 22.5 4.8E+02 0.01 24.5 8.2 22 157-178 258-279 (290)
339 PF11823 DUF3343: Protein of u 22.5 3E+02 0.0065 19.7 7.0 61 62-128 2-69 (73)
340 cd00408 DHDPS-like Dihydrodipi 22.4 4.8E+02 0.01 23.9 8.3 77 62-143 67-146 (281)
341 COG1751 Uncharacterized conser 22.4 2.8E+02 0.0062 23.6 5.8 60 62-128 29-89 (186)
342 TIGR03865 PQQ_CXXCW PQQ-depend 22.4 3E+02 0.0065 23.3 6.3 49 48-103 103-152 (162)
343 PLN02263 serine decarboxylase 22.3 5.7E+02 0.012 26.0 9.1 89 42-143 132-220 (470)
344 cd00477 FTHFS Formyltetrahydro 22.3 5.3E+02 0.011 26.5 8.7 91 90-182 355-453 (524)
345 cd01528 RHOD_2 Member of the R 22.3 1.8E+02 0.0039 21.9 4.5 37 60-103 57-93 (101)
346 PF08792 A2L_zn_ribbon: A2L zi 22.2 39 0.00085 20.7 0.5 24 14-39 4-27 (33)
347 PF01890 CbiG_C: Cobalamin syn 21.9 3E+02 0.0066 22.1 5.9 64 64-133 4-69 (121)
348 COG3880 Modulator of heat shoc 21.9 37 0.0008 29.2 0.5 29 14-42 1-35 (176)
349 PRK00423 tfb transcription ini 21.9 44 0.00095 31.8 1.1 27 14-41 12-38 (310)
350 TIGR01283 nifE nitrogenase mol 21.8 8.1E+02 0.018 24.5 12.2 55 41-102 306-360 (456)
351 cd02968 SCO SCO (an acronym fo 21.8 4.1E+02 0.0089 21.0 7.6 64 61-129 22-92 (142)
352 PRK00084 ispF 2-C-methyl-D-ery 21.6 5.1E+02 0.011 22.1 7.5 60 70-133 71-134 (159)
353 PRK09288 purT phosphoribosylgl 21.6 7.3E+02 0.016 23.9 10.3 66 61-132 11-85 (395)
354 PRK13507 formate--tetrahydrofo 21.5 6E+02 0.013 26.4 9.0 93 90-184 400-500 (587)
355 COG1997 RPL43A Ribosomal prote 21.4 34 0.00073 26.1 0.2 26 14-41 36-61 (89)
356 TIGR01212 radical SAM protein, 21.4 6.8E+02 0.015 23.5 9.9 38 42-82 60-97 (302)
357 PF00665 rve: Integrase core d 21.3 2.1E+02 0.0045 21.9 4.9 61 63-129 38-99 (120)
358 COG4825 Uncharacterized membra 21.3 87 0.0019 29.5 2.8 37 46-100 197-233 (395)
359 TIGR03156 GTP_HflX GTP-binding 21.1 7E+02 0.015 24.1 9.3 62 109-182 17-78 (351)
360 cd02344 ZZ_HERC2 Zinc finger, 21.0 54 0.0012 21.7 1.1 27 15-42 2-33 (45)
361 COG1856 Uncharacterized homolo 21.0 52 0.0011 29.9 1.3 18 57-75 51-68 (275)
362 COG1545 Predicted nucleic-acid 20.8 26 0.00056 29.3 -0.6 29 8-42 24-52 (140)
363 PF01783 Ribosomal_L32p: Ribos 20.8 57 0.0012 22.5 1.2 23 288-310 23-46 (56)
364 cd02650 nuc_hydro_CaPnhB NH_hy 20.8 3.1E+02 0.0068 25.7 6.7 58 63-126 1-61 (304)
365 COG2205 KdpD Osmosensitive K+ 20.8 6.6E+02 0.014 27.5 9.4 78 93-187 249-326 (890)
366 PLN02862 2-C-methyl-D-erythrit 20.7 5.2E+02 0.011 23.2 7.5 60 70-133 128-191 (216)
367 COG2230 Cfa Cyclopropane fatty 20.7 6.9E+02 0.015 23.5 8.7 63 45-124 58-121 (283)
368 cd01521 RHOD_PspE2 Member of t 20.7 2E+02 0.0043 22.2 4.6 38 58-103 61-100 (110)
369 TIGR00510 lipA lipoate synthas 20.6 4.5E+02 0.0098 24.9 7.7 22 157-178 261-282 (302)
370 PRK07334 threonine dehydratase 20.6 5.5E+02 0.012 25.2 8.6 64 60-131 294-360 (403)
371 PF05047 L51_S25_CI-B8: Mitoch 20.5 90 0.0019 20.8 2.2 25 251-275 1-25 (52)
372 COG1645 Uncharacterized Zn-fin 20.5 35 0.00075 28.2 0.1 22 15-40 30-51 (131)
373 cd01519 RHOD_HSP67B2 Member of 20.4 2.3E+02 0.0049 21.4 4.8 26 59-84 64-89 (106)
374 PF02585 PIG-L: GlcNAc-PI de-N 20.3 4.4E+02 0.0095 20.8 9.6 74 91-181 25-111 (128)
375 COG3414 SgaB Phosphotransferas 20.2 3E+02 0.0065 21.2 5.2 40 62-101 2-42 (93)
376 cd03067 PDI_b_PDIR_N PDIb fami 20.0 3.9E+02 0.0085 21.2 5.8 58 57-124 15-73 (112)
No 1
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=100.00 E-value=5.5e-47 Score=345.03 Aligned_cols=314 Identities=63% Similarity=1.055 Sum_probs=292.6
Q ss_pred cccccccCCCceeeccCCCccchHHHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCee
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLD 93 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~ 93 (357)
+.|..|..+.+.+..++.+..+|+.||+..|+..|..++-+.+++..|++|.++-|||+||+++++++..+..++.+|.+
T Consensus 4 ~~~~~~~~~~~~i~rp~~~q~~c~~cf~~~fe~e~~~ti~~n~l~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~ 83 (347)
T KOG2840|consen 4 RDEALCAVAKPTIRRPKQGQKLCGACFWEGFEAEIHPTIVANKLFARGERVAIGASGGKDSTVLAYVLDALNERHDYGLR 83 (347)
T ss_pred ccccccccccchhcCcchhhHHHhhhhhhcchhhhhhhHhccCccCCCCccccccccchhHHHHHHHHHHhhhhcCCCce
Confidence 35667755567899999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccC-CCHHHHHHHhC--CCCCchhHHHHHHHHHHHHHHHCC
Q 041164 94 LFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYG-WTMDEIVKVIG--LKNNCTFCGVFRRQALDRGASLLK 170 (357)
Q Consensus 94 v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~-~~i~~~~~~~~--~~~~c~~c~~~r~~~l~~~A~~~g 170 (357)
+.++.+|+|+++|.+.++..+++...++|+|+.++++++.++ ++++++....+ .++.|++|+.+|+++|.+-|...|
T Consensus 84 l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~ 163 (347)
T KOG2840|consen 84 LFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLG 163 (347)
T ss_pred eeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999998 99999998877 789999999999999999999999
Q ss_pred CCEEEcCCChhHHHHHHHHHHHccCccccccccccccCC-C-CCccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCC
Q 041164 171 VDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGE-D-GPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSP 248 (357)
Q Consensus 171 ~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~-~-~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~ 248 (357)
+..++||||+||.++|+|||+++|+..++.+........ . +.+++.+||.+.+++||.. |+....+.|+.++|.|++
T Consensus 164 ~~~~~tghnaDD~aetvl~n~lrgds~rl~R~~~~~t~~~e~~~~~r~kplk~~~~keivL-ya~~~~L~yFs~eCv~ap 242 (347)
T KOG2840|consen 164 AAELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSLEMGIIPRLKPLKYASEKEIVL-YASLSKLRYFSTECVKAP 242 (347)
T ss_pred hhhhhhcccchHHHHHHHHHHHHhHHHHhhhccccccCccccCccccccccccchhhehhh-HHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999988888887776553 3 3588999999999999999 999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhCChhHHHHHHhhhhccccccccCcccccccccccccccc-cchhhHHHHHhhcCCCCcceecc
Q 041164 249 NAYRGFAREFIKDLERLRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYISSQK-WCKACVLLEGLNRGLPKMGIVRS 327 (357)
Q Consensus 249 ~~~r~~ir~~l~~Le~~~p~~~~~i~~t~~~l~~~~~~~~~~~~~C~~Cg~p~~~~-~c~~c~~~~~~~~~~~~~~~~~~ 327 (357)
+++|...+.+|..|+...|+++-++.++++.+......+.++...|.+||..++.. +|.+|.+++.++..+|++.+.+.
T Consensus 243 ~a~rg~~r~~lk~le~~~P~~lmd~~rs~e~~~~~~~~~~p~~g~C~~C~~iss~~r~ckacallegln~~~~~~~~~~~ 322 (347)
T KOG2840|consen 243 GASRGDARILLKDLERERPRILMDYCRSGEFLEFKDIAGAPTPGTCSRCGFISSQKRPCKACALLEGLNKGAPGLGLGDK 322 (347)
T ss_pred cchHHHHHHHhhhhhhhCchHHHHHHhhhHHHhhhHhhcCCCCcchhhhHHHhcchhhHHHHHHHHhHhccCcccccccc
Confidence 99999999999999999999999999999888876555667889999999999988 99999999999999999999954
Q ss_pred c
Q 041164 328 R 328 (357)
Q Consensus 328 ~ 328 (357)
.
T Consensus 323 ~ 323 (347)
T KOG2840|consen 323 A 323 (347)
T ss_pred c
Confidence 3
No 2
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=100.00 E-value=7.8e-44 Score=329.75 Aligned_cols=233 Identities=27% Similarity=0.437 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQ 120 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~ 120 (357)
.+.+.++|.++|.+|+|+.++++|+||+|||+||++||++|+++.++.+.++++.++|||||++++.. +.++++|++
T Consensus 9 ~~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~---~~~~~~~~~ 85 (258)
T PRK10696 9 QKRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE---HVLPEYLES 85 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH---HHHHHHHHH
Confidence 46789999999999999999999999999999999999999998766656789999999999976533 467899999
Q ss_pred hCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccc
Q 041164 121 YGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLS 200 (357)
Q Consensus 121 lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~ 200 (357)
+|||+++++.+. ++...+... ...++|+.|+.+||.+|.++|++.|+++|+||||+||++||+|||+++|++ +.
T Consensus 86 lgI~~~v~~~~~-~~~~~~~~~---~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~--l~ 159 (258)
T PRK10696 86 LGVPYHIEEQDT-YSIVKEKIP---EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGK--LK 159 (258)
T ss_pred hCCCEEEEEecc-hhhhhhhhc---cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCc--cc
Confidence 999999998643 222222221 235789999999999999999999999999999999999999999999975 55
Q ss_pred cccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccccC-CCCCChhhHHHHHHHHHHHHHhCChhHHHHHHhhhh
Q 041164 201 RCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTE-CIYSPNAYRGFAREFIKDLERLRPRAILDIIKSGEN 279 (357)
Q Consensus 201 ~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~-~~~~~~~~r~~ir~~l~~Le~~~p~~~~~i~~t~~~ 279 (357)
++.+......+.+.++|||+.++++||+. |++.+|+||+.++ ||+...+.|+++|++||.|++.+|++..++++++.+
T Consensus 160 ~m~~~~~~~~~~i~iiRPLl~~~k~eI~~-y~~~~~lp~~~~~~~~~~~~~~R~~ir~~l~~L~~~~P~~~~~i~~~~~~ 238 (258)
T PRK10696 160 AMPPKLLSDDGKHIVIRPLAYVAEKDIIK-FAEAKEFPIIPCNLCGSQENLQRQVVKEMLRDWEKEYPGRIETMFRALQN 238 (258)
T ss_pred ccCCeeecCCCceeEEecCccCCHHHHHH-HHHHcCCCEeeCCCCCCCchhHHHHHHHHHHHHHHHCccHHHHHHHHHhh
Confidence 66554333345578999999999999999 9999999998655 699989999999999999999999999999999999
Q ss_pred cccc
Q 041164 280 FRIS 283 (357)
Q Consensus 280 l~~~ 283 (357)
+...
T Consensus 239 ~~~~ 242 (258)
T PRK10696 239 VVPS 242 (258)
T ss_pred cchh
Confidence 8865
No 3
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-42 Score=328.28 Aligned_cols=267 Identities=33% Similarity=0.432 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHH
Q 041164 39 CFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 39 cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~ 118 (357)
||...++.++.+.+++++++ +++|+||+|||+||++||++|+++... +++.++|||||++++++.+.+.++++|
T Consensus 1 ~~~~~~~~~v~~~i~~~~~~--~~~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~Vd~~~~~~~~~~~~~~~~~~ 74 (298)
T COG0037 1 CLREKLERKVKRAIREFNLI--EYKILVAVSGGKDSLALLHLLKELGRR----IEVEAVHVDHGLRGYSDQEAELVEKLC 74 (298)
T ss_pred ChHHHHHHHHHHHHHhcccc--CCeEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEecCCCCCccchHHHHHHHHH
Confidence 57788999999999999999 899999999999999999999998321 799999999999988888899999999
Q ss_pred HHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc
Q 041164 119 IQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR 198 (357)
Q Consensus 119 ~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~ 198 (357)
+.+|+++++.++......... ...++|..|+.+||++|.++|++.|+++|+||||+||++||+|||+++|++..
T Consensus 75 ~~~~~~~~v~~~~~~~~~~~~------~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~ 148 (298)
T COG0037 75 EKLGIPLIVERVTDDLGRETL------DGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLR 148 (298)
T ss_pred HHhCCceEEEEEEeecccccc------CCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHhh
Confidence 999999999998765431100 04579999999999999999999999999999999999999999999999765
Q ss_pred -cccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHHHHHHHHHHhCChhHHHHHHhh
Q 041164 199 -LSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERLRPRAILDIIKSG 277 (357)
Q Consensus 199 -l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir~~l~~Le~~~p~~~~~i~~t~ 277 (357)
+..+.+......+ ..++|||+.++++||.. |+..++|||..++||++..+.|+++|+.+..+++..|++..++.++.
T Consensus 149 ~l~~~~~~~~~~~~-~~~iRPL~~~~~~ei~~-~~~~~~l~~~~d~~n~~~~~~R~~~r~~l~~~~~~~p~~~~~~~~~~ 226 (298)
T COG0037 149 GLRGMPPKRPFEGG-LLIIRPLLYVREKEIEL-YAKEKGLPYIEDESNYDLRYTRNRIREELLPLEEERPGLKFSLARAF 226 (298)
T ss_pred HHhhCCcccccCCC-CeeeeecccCCHHHHHH-HHHHcCCCEeecCCCCCchhhHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4445554433333 26899999999999999 99999999999999999999999999988888888899999997777
Q ss_pred hhccccccc----cCcccccccccc-cccccccchhhHHHHHhhcCC
Q 041164 278 ENFRISTST----KMPEQGTCERCG-YISSQKWCKACVLLEGLNRGL 319 (357)
Q Consensus 278 ~~l~~~~~~----~~~~~~~C~~Cg-~p~~~~~c~~c~~~~~~~~~~ 319 (357)
+........ .......|..|| .++...+|.+|+.+..+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (298)
T COG0037 227 ELLRELRLLLEKLSDEKLLRCLACGAKPSLGKICAFCRKELALEKLP 273 (298)
T ss_pred HHhhhhHHhhhhhhhHHHhhhhhccCCCChhhhhHHHHHHHHHhcCC
Confidence 655433221 122457899998 899999999999777765433
No 4
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=100.00 E-value=5.2e-39 Score=282.67 Aligned_cols=180 Identities=32% Similarity=0.397 Sum_probs=142.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+||+|||+||++||++|.++.... +.++.++|||||++..+.++.+.++++|+.+|+|+++.+++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~--~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~---------- 68 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN--GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDE---------- 68 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT--TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--C----------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeee----------
Confidence 69999999999999999999987654 679999999999998788889999999999999999998864
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcc-ccccccccccCCCCCccccccCCc
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIA-RLSRCTLITTGEDGPIPRCKPFKY 221 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~-~l~~~~~~~~~~~~~i~~irPL~~ 221 (357)
......+.|..|+.+||.+|.++|++.|+++|+||||+||++||+|||+++|++. .+..+.+... . +++.++|||+.
T Consensus 69 ~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~-~-~~~~~iRPLl~ 146 (182)
T PF01171_consen 69 DRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVSP-F-KGIKLIRPLLY 146 (182)
T ss_dssp HCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEEE-E-TTCEEE-GGGC
T ss_pred eecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhcccccccc-c-cCcccCCcchh
Confidence 1123456788899999999999999999999999999999999999999999875 3555544322 2 23889999999
Q ss_pred CCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHHH
Q 041164 222 TYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFARE 257 (357)
Q Consensus 222 ~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir~ 257 (357)
++++||.. |++.+||||++|+||++..+.|+++|+
T Consensus 147 ~~k~ei~~-~~~~~~i~~~~D~tN~~~~~~Rn~iR~ 181 (182)
T PF01171_consen 147 VSKDEIRA-YAKENGIPYVEDPTNYDERYKRNRIRN 181 (182)
T ss_dssp S-HHHHHH-HHHHTT-SSBS-CCGGCTTSHHHHHHH
T ss_pred CCHHHHHH-HHHHCCCcEEECcCCCCCcccHHHHhC
Confidence 99999999 999999999999999999999999984
No 5
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=100.00 E-value=6.5e-37 Score=302.15 Aligned_cols=208 Identities=22% Similarity=0.249 Sum_probs=179.9
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc-CC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GW 136 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~-~~ 136 (357)
+.++++|+||+|||+||++|||+|.++... ..++++.++|||||++.+++++.++++++|+++|||+++.+++... +.
T Consensus 12 l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~-~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 90 (436)
T PRK10660 12 LLTSRQILVAFSGGLDSTVLLHLLVQWRTE-NPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLDQRGL 90 (436)
T ss_pred cCCCCeEEEEecCCHHHHHHHHHHHHHHHh-cCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEeccCCCC
Confidence 667899999999999999999999987522 2478999999999999888888899999999999999999886432 34
Q ss_pred CHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc-cccccccccCCCCCccc
Q 041164 137 TMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR-LSRCTLITTGEDGPIPR 215 (357)
Q Consensus 137 ~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~-l~~~~~~~~~~~~~i~~ 215 (357)
+++..++ ..||.++.+.+... ++|+||||+||++||+|+++++|+|.. +.+|.+.... +.+.+
T Consensus 91 ~~e~~AR------------~~Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~~--~~~~l 154 (436)
T PRK10660 91 GIEAAAR------------QARYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSPF--AGTRL 154 (436)
T ss_pred CHHHHHH------------HHHHHHHHHHHHhC--CEEEEcCchHHHHHHHHHHHHcCCChhhccccceeccc--CCCcE
Confidence 5566554 48999999888874 699999999999999999999998753 6666554322 34678
Q ss_pred cccCCcCCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHH-HHHHHHHHhCChhHHHHHHhhhhcccc
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAR-EFIKDLERLRPRAILDIIKSGENFRIS 283 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir-~~l~~Le~~~p~~~~~i~~t~~~l~~~ 283 (357)
+|||+.++|+||.. |++.+||+|++|+||.+..+.||++| +++|.|++.||++..++.++++.++..
T Consensus 155 iRPLL~~~k~ei~~-ya~~~~l~~~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~~~ 222 (436)
T PRK10660 155 IRPLLARSREELEQ-YAQAHGLRWIEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQ 222 (436)
T ss_pred eCCCccCCHHHHHH-HHHHcCCCEEECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999 799999999999999999999887643
No 6
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=100.00 E-value=9.6e-34 Score=249.21 Aligned_cols=182 Identities=47% Similarity=0.738 Sum_probs=152.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
+|+|++|||+||++||+++.++..+.+.++++.++|+|+|....++++.+.++++|+.+|++++++++.+.+. .....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~ 78 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEYT--DDIEV 78 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhcc--hhhhh
Confidence 5899999999999999999998665445789999999999876667778999999999999999999876541 11111
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccc--cCCCCCccccccCC
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLIT--TGEDGPIPRCKPFK 220 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~--~~~~~~i~~irPL~ 220 (357)
......++|.+|+.+|+..+.++|+++|+++|++|||+||++|++|+++++|++.. .+.+.. ....+.+.++|||+
T Consensus 79 ~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~~~~--~~~~~~~~~~~~~~~~iirPL~ 156 (185)
T cd01993 79 KKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILR--LMRPGPILYLDEGDVTRIRPLV 156 (185)
T ss_pred hccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcCHHH--HcCCCCccccCCCCceEEeecc
Confidence 12345678999999999999999999999999999999999999999999998744 333332 22334578899999
Q ss_pred cCCHHHHHHHHHHHcCCcccccCCCCCCh
Q 041164 221 YTYEKEIMFTYAYFKRLDYFSTECIYSPN 249 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~~~~~~~~~ 249 (357)
+++|.||+. |++.+|||+++|+|||+..
T Consensus 157 ~~~k~eI~~-~~~~~~l~~~~d~~~~~~~ 184 (185)
T cd01993 157 YVREKEIVL-YAELNGLPFVEEECPYAGN 184 (185)
T ss_pred cCCHHHHHH-HHHHcCCCcccCCCCCCCC
Confidence 999999999 9999999999999999653
No 7
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=100.00 E-value=8.4e-34 Score=250.93 Aligned_cols=187 Identities=27% Similarity=0.265 Sum_probs=156.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
+|+||+|||+||++||+++.++.... |+++.++|||+|+++.++++.+.++++|+.+|+|+++++++... ..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~--~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~------~~ 72 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL--KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKA------LA 72 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchh------hc
Confidence 58999999999999999999875543 67899999999997666677899999999999999999875321 00
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc-cccccccccCCCCCccccccCCc
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR-LSRCTLITTGEDGPIPRCKPFKY 221 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~-l~~~~~~~~~~~~~i~~irPL~~ 221 (357)
.....+.|..|+.+|+..+.++|+++|+++|++|||+||+++++++++++|.+.. +..+.+.. ...+.+.++|||++
T Consensus 73 -~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~-~~~~~~~iirPL~~ 150 (189)
T TIGR02432 73 -KGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIR-ILGNGGQIIRPLLG 150 (189)
T ss_pred -cccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCcccc-ccCCCCEEECCCCC
Confidence 1123456778999999999999999999999999999999999999999998532 44443322 12225889999999
Q ss_pred CCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHH-HHHH
Q 041164 222 TYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAR-EFIK 260 (357)
Q Consensus 222 ~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir-~~l~ 260 (357)
++++||+. |++.+|||++.++||++..+.|+++| +++|
T Consensus 151 ~~k~ei~~-~~~~~~lp~~~~~~~~~~~~~R~~~r~~~~p 189 (189)
T TIGR02432 151 ISKSEIEE-YLKENGLPWFEDETNQDDKYLRNRIRHELLP 189 (189)
T ss_pred CCHHHHHH-HHHHcCCCeeeCCCCCCCcccHHHHHHHhCC
Confidence 99999999 99999999999999999999999999 4543
No 8
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=100.00 E-value=2.2e-32 Score=240.79 Aligned_cols=183 Identities=28% Similarity=0.281 Sum_probs=153.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
+|+||+|||+||+++++++.++...+ ++++.++|+|+|+...+.++.+.++++|+.+|++++++....
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~--~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------- 68 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL--GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVAL---------- 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc--CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecc----------
Confidence 58999999999999999999885543 679999999999876556789999999999999999982110
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc-cccccccccCCCCCccccccCCc
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR-LSRCTLITTGEDGPIPRCKPFKY 221 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~-l~~~~~~~~~~~~~i~~irPL~~ 221 (357)
......++|..|+.+|++.|.++|+++|+++|+||||+||+++++++++++|++.. +..+... ...+.+.++|||++
T Consensus 69 ~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~--~~~~~~~virPl~~ 146 (185)
T cd01992 69 APKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPAR--IPFGGGRLIRPLLG 146 (185)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcc--cCCCCCeEECCCCC
Confidence 01134567788999999999999999999999999999999999999999997643 2222111 12345789999999
Q ss_pred CCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHH-HHHH
Q 041164 222 TYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAR-EFIK 260 (357)
Q Consensus 222 ~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir-~~l~ 260 (357)
++++||+. |++.+|||++.++||++..+.|+++| +++|
T Consensus 147 ~~k~eI~~-~~~~~~l~~~~~~~~~~~~~~r~~~r~~~~~ 185 (185)
T cd01992 147 ITRAEIEA-YLRENGLPWWEDPSNEDPRYTRNRIRHELLP 185 (185)
T ss_pred CCHHHHHH-HHHHcCCCeEECCCCCCCcccHHHHHHhhCC
Confidence 99999999 99999999999999999999999999 5553
No 9
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=4.9e-30 Score=235.75 Aligned_cols=294 Identities=15% Similarity=0.252 Sum_probs=211.2
Q ss_pred CcccccccCCCceeeccCCCccchHHHHHHHHHHHHHH--HHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhh---
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQ--VIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRR--- 87 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~~~kv~~--~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~--- 87 (357)
+..|+||+.+....++.-..+++|.+||.+++++|||+ +....++..+.+.+++++|||..|++||++++-+.++
T Consensus 12 ~s~c~KCd~na~~~~v~~~k~~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k~ 91 (396)
T KOG2594|consen 12 ESACVKCDKNANMTTVDGKKDAFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLKN 91 (396)
T ss_pred cccccccccCCCcccccccchhHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHHHHHHhhh
Confidence 44688887664444444556799999999999999999 5556678888899999999999999999999933222
Q ss_pred --CCCCeeEEEEEe-cCCCCCCChhhHHHHHHHHHHhC--CCeEEE--eeccccC---------CCHHHHHHHhCCC---
Q 041164 88 --HNYGLDLFLLSI-DEGISGYRDDSLQTVKRNEIQYG--LPLKIV--SYKDLYG---------WTMDEIVKVIGLK--- 148 (357)
Q Consensus 88 --~~~g~~v~av~i-d~g~~~~~~~~~~~v~~~~~~lg--i~~~iv--~~~~~~~---------~~i~~~~~~~~~~--- 148 (357)
...++.+.++.+ -.+. .++...+.++++-.+.- +++.|. ...+.+. .+.+-+.+.....
T Consensus 92 ~~~~~~~tv~v~~~~~~~~--~~~~v~e~lq~l~~~~~~~~~~~V~~la~~~~~~~~~~~~~~~~n~El~ak~~kl~~~~ 169 (396)
T KOG2594|consen 92 KRLRRDFTVLVLVVFQEFT--DSTAVFEALQELIIDNIEWVRYVVSCLAPPEKDNHVVPVESINGNDELIAKDRKLKLSD 169 (396)
T ss_pred hhcCcCCceEEEEEEEecc--chHHHHHHHHHHHHhhccccceEEEecCchHhhcCcccccccCCCceeecchhhccccc
Confidence 123555544333 2221 23445666666655531 223331 1111111 0111111110111
Q ss_pred -----CCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCC-CCccccccCCcC
Q 041164 149 -----NNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGED-GPIPRCKPFKYT 222 (357)
Q Consensus 149 -----~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~-~~i~~irPL~~~ 222 (357)
+...+-..+|..+|.++|.++|++.|++||+.+|+++.+|..++.|+|..+++.....+... +.++.+|||+++
T Consensus 170 sv~~~srqDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~llrPLrDl 249 (396)
T KOG2594|consen 170 SVPDDSRQDLLLHLKMKLLQKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVKLLRPLRDL 249 (396)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhccccCCCceeehhHHHH
Confidence 12344567889999999999999999999999999999999999999999988877765443 568899999999
Q ss_pred CHHHHHHHHHHHcCCcccccC-----CC-CCChhhHHHHHHHHHHHHHhCChhHHHHHHhhhhccccccccCcccccccc
Q 041164 223 YEKEIMFTYAYFKRLDYFSTE-----CI-YSPNAYRGFAREFIKDLERLRPRAILDIIKSGENFRISTSTKMPEQGTCER 296 (357)
Q Consensus 223 ~k~EI~~~ya~~~~i~~~~~~-----~~-~~~~~~r~~ir~~l~~Le~~~p~~~~~i~~t~~~l~~~~~~~~~~~~~C~~ 296 (357)
.+.||.. |++..|+++.... -| .+..++.+.+..|+..|++.||+++.+++||++||..+.. ..+...|.+
T Consensus 250 ~~~Ei~~-y~~l~~l~~~~c~~~~k~~~~~~q~sI~~lT~afva~Lqn~f~S~vsTV~rTaaKl~~~s~--s~~es~C~i 326 (396)
T KOG2594|consen 250 LSLEITS-YCLLDGLAYYFCQGRRKTVELASQCSINDLTSAFVALLQNEFPSTVSTVVRTAAKLTVPSF--SMTESFCPI 326 (396)
T ss_pred HHHHHHH-HHHhhcCCchhhhHHHhhccchhhccHHHHHHHHHHHHHhhcchHHHHHHhhhhhhcCCCC--CCCcccccc
Confidence 9999999 9999999953311 11 1345778888899999999999999999999999997632 334788999
Q ss_pred ccccccc---------------ccchhhHH
Q 041164 297 CGYISSQ---------------KWCKACVL 311 (357)
Q Consensus 297 Cg~p~~~---------------~~c~~c~~ 311 (357)
|..|-.. .+|+.|+.
T Consensus 327 Cn~~l~~~~s~~L~~ie~~~~~sv~st~~~ 356 (396)
T KOG2594|consen 327 CNSPLNRSDSSWLDTIEVGQPASVCSTCRF 356 (396)
T ss_pred cCCcccCCchhhhhheecccCcccchhHHH
Confidence 9999544 78998884
No 10
>PRK08349 hypothetical protein; Validated
Probab=99.96 E-value=4.5e-29 Score=222.31 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=143.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHH----hCCCe---EEEeeccccC
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQ----YGLPL---KIVSYKDLYG 135 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~----lgi~~---~iv~~~~~~~ 135 (357)
+++|++|||+||+++|+++.+. |++|.++|+|++. .+.+.++++|+. +|+++ +++++.+..+
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~------g~~v~av~~d~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR------GVEVYPVHFRQDE-----KKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc------CCeEEEEEEeCCH-----HHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 6899999999999999999885 8999999999853 223444455444 46886 5566554433
Q ss_pred CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 136 WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 136 ~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
...+.+.+....+++|+.|+.+++.++.++|.++|+++|+||||.||.+++.++|+..+.. ...+.+
T Consensus 71 ~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~-------------~~~i~i 137 (198)
T PRK08349 71 PVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVIST-------------ATDLPV 137 (198)
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhcccc-------------ccCCeE
Confidence 3334433333457899999999999999999999999999999999999999999988642 113678
Q ss_pred cccCCcCCHHHHHHHHHHHcCCccc----ccCCCC-----CChhhHHHHHHHHHHHHHhCC
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLDYF----STECIY-----SPNAYRGFAREFIKDLERLRP 267 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~~~----~~~~~~-----~~~~~r~~ir~~l~~Le~~~p 267 (357)
+|||..++|+||+. |++.+|++.. ...||+ .....+..++++++.||+.-|
T Consensus 138 ~rPL~~~~K~eI~~-~a~~~g~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (198)
T PRK08349 138 LRPLIGLDKEEIVK-IAKEIGTFEISIEPEPPCPFVPKYPVVRASLGEFEKILEEVYVLGP 197 (198)
T ss_pred EcCCCCCCHHHHHH-HHHHcCChhhhhCCCCCCcCCCCCCcCCCCHHHHHHHHHHHhccCC
Confidence 99999999999999 9999997654 456998 345778899999999988766
No 11
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.96 E-value=9e-29 Score=237.62 Aligned_cols=206 Identities=22% Similarity=0.241 Sum_probs=158.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC--------CChhhHHHHHHHHHHhCCCeEEEeecccc
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG--------YRDDSLQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~--------~~~~~~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
+|+||+|||+||++++++|+++ |+++.++|++++..+ ++.++.+.++++|+.+|+|++++++.+.|
T Consensus 2 kVlValSGGvDSsvla~lL~~~------G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f 75 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQ------GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEF 75 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHc------CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHH
Confidence 7999999999999999999886 889999999987642 25667889999999999999999998776
Q ss_pred CC-CHHHHHH---HhCCCCCchhHHH-HHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccccc---ccccc
Q 041164 135 GW-TMDEIVK---VIGLKNNCTFCGV-FRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSR---CTLIT 206 (357)
Q Consensus 135 ~~-~i~~~~~---~~~~~~~c~~c~~-~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~---~~~~~ 206 (357)
.. .++.+.. ....++||..|+. +|+.+|.++|+++|+++||||||+||.+++ ++++|.+..-.. +..+
T Consensus 76 ~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~---~L~rg~d~~kDqsy~l~~l- 151 (346)
T PRK00143 76 WDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGR---ELLRGVDPNKDQSYFLYQL- 151 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc---eEEEccCCCcChhhhhccC-
Confidence 42 2222222 2346899999998 678999999999999999999999999877 889985533110 0111
Q ss_pred cCCCCCccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCCh-hhHHHHHHHHHHHHHhCChhHHHHHHhhhhccc
Q 041164 207 TGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPN-AYRGFAREFIKDLERLRPRAILDIIKSGENFRI 282 (357)
Q Consensus 207 ~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~-~~r~~ir~~l~~Le~~~p~~~~~i~~t~~~l~~ 282 (357)
+ ......+++||.+++|+||+. ||+.+|||+...+|++..- ..+..+++||.+++...||.+.++ .++.+..
T Consensus 152 ~-~~~l~~~i~PL~~~~K~eVr~-~A~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~~~~pG~~~~~--~g~~~g~ 224 (346)
T PRK00143 152 T-QEQLAKLLFPLGELTKPEVRE-IAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPAQPGEIVDL--DGKVLGE 224 (346)
T ss_pred C-HHHhcceeccCccCCHHHHHH-HHHHcCCCcCCCCCCCcccCCCchhHHHHHHHhcccCCCCEEcc--CCCEEEE
Confidence 1 112236799999999999999 9999999999888876432 223457778887777789876654 3455543
No 12
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.93 E-value=1.1e-25 Score=216.34 Aligned_cols=197 Identities=17% Similarity=0.199 Sum_probs=142.4
Q ss_pred CCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCC
Q 041164 57 LFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGW 136 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~ 136 (357)
|++++++|+||+|||+||+++|++|++. |++++++|++++....+.++.+.++++|+.+|+|++++++++.|..
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~~------G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~ 74 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLEA------GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRK 74 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHHc------CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHH
Confidence 5788999999999999999999999986 8999999999865434556688999999999999999999876642
Q ss_pred CH-HHHHH---HhCCCCCchhHHH-HHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCC
Q 041164 137 TM-DEIVK---VIGLKNNCTFCGV-FRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDG 211 (357)
Q Consensus 137 ~i-~~~~~---~~~~~~~c~~c~~-~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~ 211 (357)
.+ +.+.. ....++||..|+. +|+.+|.++|+++|+++|+|||++.+...+-...+.+|.+..-....-+.....+
T Consensus 75 ~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~ 154 (360)
T PRK14665 75 QIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQE 154 (360)
T ss_pred HHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHH
Confidence 22 22111 2356899999998 6789999999999999999999997654333333455543221100000001111
Q ss_pred -CccccccCCcCCHHHHHHHHHHHcCCccc-c----c-CCCCCChhhHHHHHHHHHH
Q 041164 212 -PIPRCKPFKYTYEKEIMFTYAYFKRLDYF-S----T-ECIYSPNAYRGFAREFIKD 261 (357)
Q Consensus 212 -~i~~irPL~~~~k~EI~~~ya~~~~i~~~-~----~-~~~~~~~~~r~~ir~~l~~ 261 (357)
.-..++||.+++|.||+. +|+..|++.. . . -|... ..++.++++.++.
T Consensus 155 ~l~~~ifPLg~~~K~eVr~-~A~~~gl~~~a~k~eSq~iCF~~-~~~~~fl~~~~~~ 209 (360)
T PRK14665 155 ILQRMLLPMGGMTKSEARA-YAAERGFEKVAKKRDSLGVCFCP-MDYRSFLKKCLCD 209 (360)
T ss_pred HHhheeccCcCCCHHHHHH-HHHHCCCCccCcCCCCCccccCC-chHHHHHHHhccc
Confidence 124589999999999999 9999998432 2 1 25543 4677777766653
No 13
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.93 E-value=6.9e-26 Score=218.02 Aligned_cols=199 Identities=22% Similarity=0.300 Sum_probs=146.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC------CCChhhHHHHHHHHHHhCCCeEEEeeccccCC
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS------GYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGW 136 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~------~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~ 136 (357)
+|+||+|||+||++++++|+++ |++++++|++++.. ..++++.+.++++|+.+|+|++++++++.|..
T Consensus 1 kVlValSGGvDSsvla~lL~~~------g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~ 74 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ------GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWE 74 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc------CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHH
Confidence 5899999999999999999886 88999999998753 12456789999999999999999999876632
Q ss_pred -CHHHHHH---HhCCCCCchhHHH-HHHHHHHHHHHHCCCCEEEcCCChhHHHHH-HHHHHHccCcccccccccccc-CC
Q 041164 137 -TMDEIVK---VIGLKNNCTFCGV-FRRQALDRGASLLKVDKIATGHNADDIAET-VLLNILRGDIARLSRCTLITT-GE 209 (357)
Q Consensus 137 -~i~~~~~---~~~~~~~c~~c~~-~r~~~l~~~A~~~g~~~I~tGh~~dD~aet-~l~~l~rG~~~~l~~~~~~~~-~~ 209 (357)
.++.+.. ....++||..|+. +|+.+|.++|+++|+++|+||||++|..++ ...++++|....-....-... ..
T Consensus 75 ~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~ 154 (349)
T cd01998 75 KVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQ 154 (349)
T ss_pred HHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCH
Confidence 1122222 2346899999988 579999999999999999999999998776 666677775432111000000 01
Q ss_pred CCCccccccCCcCCHHHHHHHHHHHcCCcccccC-----CCCCChhhHHHHHHHHHHHHHhCChhHHH
Q 041164 210 DGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTE-----CIYSPNAYRGFAREFIKDLERLRPRAILD 272 (357)
Q Consensus 210 ~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~-----~~~~~~~~r~~ir~~l~~Le~~~p~~~~~ 272 (357)
.....+++||.+++|+||+. ||+.+|||+...+ |......++.++++.++. .||-+.+
T Consensus 155 ~~l~~ii~PL~~~~K~eVr~-~A~~~gl~~~~k~~s~~iCFi~~~~~~~fl~~~~~~----~~G~i~~ 217 (349)
T cd01998 155 EQLSRLIFPLGDLTKPEVRE-IAKELGLPVAKKKDSQGICFIGERNFRDFLKEYLPE----KPGEIVD 217 (349)
T ss_pred HHHhheeecCCCCCHHHHHH-HHHHcCCCCCCCCCCCceEEecCCCHHHHHHHhcCC----CCCCEEC
Confidence 11245799999999999999 9999999976542 766655666666655543 4665443
No 14
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.92 E-value=2.2e-24 Score=188.86 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=123.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCCh--hhHHHHHHHHHHhCCCeEE--EeeccccCCCH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRD--DSLQTVKRNEIQYGLPLKI--VSYKDLYGWTM 138 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~--~~~~~v~~~~~~lgi~~~i--v~~~~~~~~~i 138 (357)
+|+|++|||+||+++++++++. |+++.++|+|+|+....+ +....+.+....+++++.+ +++... ..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~------g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~ 71 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR------GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF---VQ 71 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc------CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH---HH
Confidence 5899999999999999999986 899999999999864321 2234444455667777654 443221 12
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCcccccc
Q 041164 139 DEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKP 218 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irP 218 (357)
++.......+++|..|+.+++..+..+|++.|+++|++|||+||.+.+.++++.... ..+.+.++||
T Consensus 72 ~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~-------------~~~~~~i~rP 138 (177)
T cd01712 72 KEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVIS-------------SGTDLPILRP 138 (177)
T ss_pred HHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhcc-------------cCCCCeEECC
Confidence 233333456799999999999999999999999999999999999998888877643 1123778999
Q ss_pred CCcCCHHHHHHHHHHHcCCccccc
Q 041164 219 FKYTYEKEIMFTYAYFKRLDYFST 242 (357)
Q Consensus 219 L~~~~k~EI~~~ya~~~~i~~~~~ 242 (357)
|+.++|+||+. |++.+|++.+.-
T Consensus 139 l~~~~K~eI~~-~a~~~gl~~~~~ 161 (177)
T cd01712 139 LIGFDKEEIIG-IARRIGTYDISI 161 (177)
T ss_pred CCCCCHHHHHH-HHHHcCCcceec
Confidence 99999999999 999999987654
No 15
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.92 E-value=6.3e-25 Score=205.58 Aligned_cols=172 Identities=17% Similarity=0.129 Sum_probs=128.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccCCCHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~~~i~~~ 141 (357)
+|+||+|||+||++||+++++. .|.++.++|+|+|+. +..+.+.++++|+++|+ ++++++.++.|. +..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-----lG~~v~aV~vd~g~~--~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl---~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-----IGDRLTCVFVDNGLL--RKNEAERVEELFSKLLGINLIVVDASERFL---SAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-----hCCcEEEEEecCCCC--ChHHHHHHHHHHHHhCCCcEEEEcCcHHHH---HHh
Confidence 5899999999999999999985 377899999999984 35568899999999986 999999875431 111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCC-CCEEEcCCChhHHHHHHHHHHHccCccccccccccccC-CCCCccccccC
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLK-VDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTG-EDGPIPRCKPF 219 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g-~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~-~~~~i~~irPL 219 (357)
....+....|.+|+..++..+.++|+++| +++|++|||+||++|+..++...+ .+..+.++... ......+++||
T Consensus 71 ~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~---~IKs~~n~~Gl~a~~~~~vi~PL 147 (295)
T cd01997 71 KGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSAD---TIKSHHNVGGLPEDMKLKLIEPL 147 (295)
T ss_pred cCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccc---cccccccccccchHhhCCccccc
Confidence 10011123567888999999999999999 999999999999999876543311 12222221111 11236689999
Q ss_pred CcCCHHHHHHHHHHHcCCcc---cccCCCCCC
Q 041164 220 KYTYEKEIMFTYAYFKRLDY---FSTECIYSP 248 (357)
Q Consensus 220 ~~~~k~EI~~~ya~~~~i~~---~~~~~~~~~ 248 (357)
++++|+||+. |++.+|+|+ +..|+|.+.
T Consensus 148 ~~l~K~EVR~-lar~lGLp~~~~~~~Pfp~p~ 178 (295)
T cd01997 148 RDLFKDEVRE-LGRELGLPEEIVERHPFPGPG 178 (295)
T ss_pred ccCcHHHHHH-HHHHcCCCchhhCCCCCCCCc
Confidence 9999999999 999999998 555666544
No 16
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.91 E-value=2.2e-24 Score=217.02 Aligned_cols=177 Identities=19% Similarity=0.207 Sum_probs=130.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHH-HHHHHhCCCeEEEeeccccCCCHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVK-RNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~-~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
+++|+||+|||+||+++|+++++. .|.++.++|+|+|+.. ..+.+.+. .+|+.+|++++++++++.|...++
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~-----lg~~v~av~vd~g~~~--~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~~l~ 287 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKA-----IGDQLTCVFVDHGLLR--KNEAEQVMEMFREHFGLNLIHVDASDRFLSALA 287 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHH-----hCCceEEEEEeCCCCC--HHHHHHHHHHHHHHcCCcEEEEccHHHHHHhcc
Confidence 479999999999999999999986 3788999999999843 33445555 578999999999998754421100
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHHHC-CCCEEEcCCChhHHHHHHHHHHHccCccccccccccccC-CCCCccccc
Q 041164 140 EIVKVIGLKNNCTFCGVFRRQALDRGASLL-KVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTG-EDGPIPRCK 217 (357)
Q Consensus 140 ~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~-g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~-~~~~i~~ir 217 (357)
.+ ......|.+|+...+..|.++|++. |+++|++|||+||++++.+++ .+++ +....++... ......+++
T Consensus 288 g~---~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~--~~~~--ik~~~~l~Gl~~~~~~~ii~ 360 (511)
T PRK00074 288 GV---TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTK--KAAT--IKSHHNVGGLPEDMKLKLVE 360 (511)
T ss_pred CC---CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcCCC--Cccc--cccccCccCcChhHhccccc
Confidence 00 1122357788888899999999999 999999999999999998766 3332 2211111000 011245899
Q ss_pred cCCcCCHHHHHHHHHHHcCCcc---cccCCCCCChhhH
Q 041164 218 PFKYTYEKEIMFTYAYFKRLDY---FSTECIYSPNAYR 252 (357)
Q Consensus 218 PL~~~~k~EI~~~ya~~~~i~~---~~~~~~~~~~~~r 252 (357)
||++++|+||+. |++.+|||+ +..+||++.-+.|
T Consensus 361 PL~~l~K~EIr~-~a~~~gLp~~~~~~~p~p~~~la~R 397 (511)
T PRK00074 361 PLRELFKDEVRK-LGLELGLPEEIVYRHPFPGPGLAIR 397 (511)
T ss_pred chhhcCHHHHHH-HHHHcCCCHHHhCCCCCCCCceeeE
Confidence 999999999999 999999995 4457787654444
No 17
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.91 E-value=1.1e-24 Score=209.53 Aligned_cols=189 Identities=21% Similarity=0.235 Sum_probs=132.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC----C----CChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS----G----YRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~----~----~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
.+|+||+|||+||++++++|++. |++|.++|+++... . .++++.+.++++|+.+|||++++++++.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~------G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~ 74 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ------GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKE 74 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc------CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHH
Confidence 37999999999999999999996 88999999964321 0 2456788999999999999999999876
Q ss_pred cC-----CCHHHHHHHhCCCCCchhHHHH-HHHHHHHHHHHC-CCCEEEcCCChhHHHHHHHHHHHccCcc---cccccc
Q 041164 134 YG-----WTMDEIVKVIGLKNNCTFCGVF-RRQALDRGASLL-KVDKIATGHNADDIAETVLLNILRGDIA---RLSRCT 203 (357)
Q Consensus 134 ~~-----~~i~~~~~~~~~~~~c~~c~~~-r~~~l~~~A~~~-g~~~I~tGh~~dD~aet~l~~l~rG~~~---~l~~~~ 203 (357)
|. ..++++. ....++||..|+.. |+..|.++|++. |+++||||||+++........+++|... +...+.
T Consensus 75 f~~~v~~~~~~~y~-~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~ 153 (352)
T TIGR00420 75 YWNKVFEPFIQEYK-EGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLY 153 (352)
T ss_pred HHHHHHHHHHHHHH-cCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCcCcceecc
Confidence 63 2233332 23578999999876 579999999996 9999999999943211111123333321 111111
Q ss_pred ccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccccC-----CCCCChhhHHHHHHHHH
Q 041164 204 LITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTE-----CIYSPNAYRGFAREFIK 260 (357)
Q Consensus 204 ~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~-----~~~~~~~~r~~ir~~l~ 260 (357)
.+ .......+++||.+++|+||+. ||+.+|+++...+ |......++.++++.++
T Consensus 154 ~l--~~~~l~~~i~PL~~~~K~EVr~-~A~~~gl~~~~k~~Sq~iCFi~~~~~~~fl~~~~~ 212 (352)
T TIGR00420 154 HL--SHEQLAKLLFPLGELLKPEVRQ-IAKNAGLPTAEKKDSQGICFIGERKFRDFLKKYLP 212 (352)
T ss_pred cC--CHHHhhhhcccCCCCCHHHHHH-HHHHcCCCCCCCCCCCCeEEecCCCHHHHHHHhCC
Confidence 11 1112245799999999999999 9999999986642 54444455555554443
No 18
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.91 E-value=7.8e-24 Score=199.97 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHH-H
Q 041164 40 FYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRN-E 118 (357)
Q Consensus 40 f~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~-~ 118 (357)
|.+....++++.++ +++|+||+|||+||+++|+++++. .|.++.++|||+|+.. ..+.+.+.+. +
T Consensus 2 ~~~~~~~~l~~~v~-------~~kVvValSGGVDSsvla~ll~~~-----~G~~v~av~vd~G~~~--~~E~e~~~~~~~ 67 (311)
T TIGR00884 2 FIEEAVEEIREQVG-------DAKVIIALSGGVDSSVAAVLAHRA-----IGDRLTCVFVDHGLLR--KGEAEQVVKTFG 67 (311)
T ss_pred hHHHHHHHHHHHhC-------CCcEEEEecCChHHHHHHHHHHHH-----hCCCEEEEEEeCCCCC--hHHHHHHHHHHH
Confidence 34444455554442 378999999999999999999886 3779999999999963 3445566555 5
Q ss_pred HHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCC-CCEEEcCCChhHHHHHHHHHHHccCcc
Q 041164 119 IQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLK-VDKIATGHNADDIAETVLLNILRGDIA 197 (357)
Q Consensus 119 ~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g-~~~I~tGh~~dD~aet~l~~l~rG~~~ 197 (357)
+.+|++++++++++.|...++.. ......|..|+..++..+.++|+++| +++|++|||+||++++.+ |...
T Consensus 68 ~~lgi~~~vvd~~e~fl~~l~~v---~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~-----G~~~ 139 (311)
T TIGR00884 68 DRLGLNLVYVDAKERFLSALKGV---TDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAA-----GTAH 139 (311)
T ss_pred HHcCCcEEEEeCcHHHHhhhcCC---CChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhcc-----ChhH
Confidence 58999999999886542111110 11123467888889999999999999 999999999999999864 3211
Q ss_pred cccccccccc-CCCCCccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 198 RLSRCTLITT-GEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 198 ~l~~~~~~~~-~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
.+....++.. .......+++||++++|+||+. |++.+|+|+
T Consensus 140 ~iks~~~~~gl~~~~~~~ii~PL~~l~K~EVr~-la~~lgLp~ 181 (311)
T TIGR00884 140 VIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRK-LGKELGLPE 181 (311)
T ss_pred hhhccCccccCChhhcCceEEEcccCcHHHHHH-HHHHcCCCH
Confidence 1222222110 0112356899999999999999 999999995
No 19
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.91 E-value=5.1e-24 Score=190.39 Aligned_cols=150 Identities=22% Similarity=0.251 Sum_probs=121.2
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHH
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK 143 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~ 143 (357)
|+|++|||+||+++++++++.. +.++.++|+|+|+. ++.+.+.++++|+++|+++++++++... ...+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~-----~~~v~~v~vd~g~~--~~~~~~~~~~~a~~lgi~~~~~~~~~~~---~~~~~- 69 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL-----GDRVLAVTATSPLF--PRRELEEAKRLAKEIGIRHEVIETDELD---DPEFA- 69 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh-----CCcEEEEEeCCCCC--CHHHHHHHHHHHHHcCCcEEEEeCCccc---cHHHh-
Confidence 6899999999999999998861 34899999999985 4667899999999999999999986432 11221
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC--c
Q 041164 144 VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK--Y 221 (357)
Q Consensus 144 ~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~--~ 221 (357)
.....+|..|+.+++..+.++|+++|+++|++|||+||+++.. ..+. .. . .+.++|||+ .
T Consensus 70 -~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~---------~~~~---~~----~-~~~iirPL~~~~ 131 (202)
T cd01990 70 -KNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR---------PGLK---AL----R-ELGVRSPLAEAG 131 (202)
T ss_pred -cCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC---------hHHH---HH----H-HcCCcCchhhcC
Confidence 2356789999999999999999999999999999999987631 0011 10 0 155799999 5
Q ss_pred CCHHHHHHHHHHHcCCcccccC
Q 041164 222 TYEKEIMFTYAYFKRLDYFSTE 243 (357)
Q Consensus 222 ~~k~EI~~~ya~~~~i~~~~~~ 243 (357)
++|+||.. |++.+|+|+++++
T Consensus 132 ~~K~ei~~-~a~~~gl~~~~~~ 152 (202)
T cd01990 132 LGKAEIRE-LARELGLPTWDKP 152 (202)
T ss_pred CCHHHHHH-HHHHcCCCCcCCC
Confidence 99999999 9999999996655
No 20
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.91 E-value=3e-24 Score=205.82 Aligned_cols=191 Identities=20% Similarity=0.239 Sum_probs=137.7
Q ss_pred CCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCC
Q 041164 57 LFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGW 136 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~ 136 (357)
|+.++++|+||+|||+||++++++|++. |+++.++|++... ++.+.++++|+.+|||++++++++.|..
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~~~------G~eV~av~~~~~~-----~e~~~a~~va~~LGI~~~vvd~~~~f~~ 69 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQEQ------GYEIVGVTMRVWG-----DEPQDARELAARMGIEHYVADERVPFKD 69 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHHHc------CCcEEEEEecCcc-----hhHHHHHHHHHHhCCCEEEEeChHHHHH
Confidence 4567889999999999999999999875 8899999998642 2356799999999999999999876641
Q ss_pred -CHHHHHH---HhCCCCCchhHHH-HHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccC-CC
Q 041164 137 -TMDEIVK---VIGLKNNCTFCGV-FRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTG-ED 210 (357)
Q Consensus 137 -~i~~~~~---~~~~~~~c~~c~~-~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~-~~ 210 (357)
.++.+.. ....++||++|+. +|+.+|.++|.+.|+++|+|||++++......+++++|.+..-....-.... ..
T Consensus 70 ~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~~~ 149 (362)
T PRK14664 70 TIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQD 149 (362)
T ss_pred HHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcCHH
Confidence 1222211 2357899999995 5789999999999999999999997643333455667754321100000000 01
Q ss_pred CCccccccCCcCCHHHHHHHHHHHcCCcc-cc--c---CCCCCChhhHHHHHHHHH
Q 041164 211 GPIPRCKPFKYTYEKEIMFTYAYFKRLDY-FS--T---ECIYSPNAYRGFAREFIK 260 (357)
Q Consensus 211 ~~i~~irPL~~~~k~EI~~~ya~~~~i~~-~~--~---~~~~~~~~~r~~ir~~l~ 260 (357)
..-.+++||.+++|.||+. ||+.+||+. .. + -|... ..++.++++.++
T Consensus 150 ~l~~~ifPLg~~~K~evr~-~A~~~gl~~~a~k~dSq~iCFi~-~~~~~fl~~~~~ 203 (362)
T PRK14664 150 ILRRCIFPLGNYTKQTVRE-YLREKGYEAKSKEGESMEVCFIK-GDYRDFLREQCP 203 (362)
T ss_pred HHhHHhccCccCCHHHHHH-HHHHcCCCCCCCCCCCCcceeec-CcHHHHHHHhcc
Confidence 1124689999999999999 999999987 22 1 16653 466666665554
No 21
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.90 E-value=2.6e-23 Score=191.85 Aligned_cols=154 Identities=20% Similarity=0.285 Sum_probs=123.1
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWT 137 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~ 137 (357)
++..++|+||+|||+||+++++++++. |.++.++|+|++.. ++++.+.++++|+.+|++++++++++..
T Consensus 9 l~~~~~vlVa~SGGvDSs~ll~la~~~------g~~v~av~~~~~~~--~~~e~~~a~~~a~~lgi~~~ii~~~~~~--- 77 (252)
T TIGR00268 9 LKEFKKVLIAYSGGVDSSLLAAVCSDA------GTEVLAITVVSPSI--SPRELEDAIIIAKEIGVNHEFVKIDKMI--- 77 (252)
T ss_pred HHhcCCEEEEecCcHHHHHHHHHHHHh------CCCEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEEEcHHHH---
Confidence 345678999999999999999999986 78899999998753 4567889999999999999999986421
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccc
Q 041164 138 MDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCK 217 (357)
Q Consensus 138 i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ir 217 (357)
+++. .+.+++|.+|+..++..+.++|+++|+++|++|||+||+++.- +.+. .. .. ...++
T Consensus 78 -~~~~--~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r---------pg~~---a~---~~--~~~~~ 137 (252)
T TIGR00268 78 -NPFR--ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR---------PGYR---AV---KE--FNGVS 137 (252)
T ss_pred -HHHH--hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc---------HHHH---HH---HH--cCCCC
Confidence 2222 2567899999999999999999999999999999999976421 0111 10 01 22369
Q ss_pred cCCc--CCHHHHHHHHHHHcCCcccccC
Q 041164 218 PFKY--TYEKEIMFTYAYFKRLDYFSTE 243 (357)
Q Consensus 218 PL~~--~~k~EI~~~ya~~~~i~~~~~~ 243 (357)
||.+ ++|+||+. |++.+|+|+++++
T Consensus 138 PL~~~~l~K~eIr~-la~~~gl~~~~~p 164 (252)
T TIGR00268 138 PWAEFGITKKEIRE-IAKSLGISFPDKP 164 (252)
T ss_pred cchhcCCCHHHHHH-HHHHcCCCccCCC
Confidence 9976 79999999 9999999998544
No 22
>PRK00919 GMP synthase subunit B; Validated
Probab=99.90 E-value=4.3e-23 Score=193.73 Aligned_cols=161 Identities=22% Similarity=0.226 Sum_probs=123.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
+++|+||+|||+||+++|+++++. .|.+++++|+|+|+. +..+.+.++++|+++ +++.++++++.|. +.
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~-----lG~~v~aV~vD~G~~--~~~E~e~a~~~~~~~-i~~~vvd~~e~fl---~~ 89 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRA-----IGDRLTPVFVDTGLM--RKGETERIKETFSDM-LNLRIVDAKDRFL---DA 89 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHH-----hCCeEEEEEEECCCC--CHHHHHHHHHHHhcc-CCcEEEECCHHHH---Hh
Confidence 489999999999999999999985 388999999999995 466789999999998 9999998875431 11
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK 220 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~ 220 (357)
+.........|.+|+..++..+.++|++.|+++|++|||+||.+++ +|.........++ +. ...+.+++||+
T Consensus 90 L~~v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~------r~~iks~~nv~gl-~~-~~~~~Ii~PL~ 161 (307)
T PRK00919 90 LKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIES------EGGIKSHHNVGGL-PE-GMVLKIVEPLR 161 (307)
T ss_pred ccCCCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhc------cCccccccccccc-Ch-hhcCCcccCch
Confidence 1100122335788999999999999999999999999999999876 2321100111111 11 11356899999
Q ss_pred cCCHHHHHHHHHHHcCCcccc
Q 041164 221 YTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~ 241 (357)
+++|+||+. |++.+|||+..
T Consensus 162 ~l~K~EVr~-la~~lGLp~~~ 181 (307)
T PRK00919 162 DLYKDEVRE-VARALGLPEEI 181 (307)
T ss_pred hCcHHHHHH-HHHHcCCChhh
Confidence 999999999 99999999863
No 23
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.88 E-value=5.8e-22 Score=191.31 Aligned_cols=152 Identities=21% Similarity=0.305 Sum_probs=121.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC-------CCeEEEeecccc
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG-------LPLKIVSYKDLY 134 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg-------i~~~iv~~~~~~ 134 (357)
.++++++|||+||++++++|.+. |++|.++|+++| +...+.++++|+.|+ ++++++++...
T Consensus 181 gkvlvllSGGiDSpVAa~ll~kr------G~~V~~v~f~~g-----~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~- 248 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMMKR------GVEVIPVHIYMG-----EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQER- 248 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHHHc------CCeEEEEEEEeC-----HHHHHHHHHHHHHhcccccCCcceEEEEChHHH-
Confidence 68999999999999999999997 999999999977 345788999999988 44666655321
Q ss_pred CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCcc
Q 041164 135 GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIP 214 (357)
Q Consensus 135 ~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~ 214 (357)
......+........+|.+|+.++++++.++|+++|+++|+|||+++|.+++++.|+..-. ....++
T Consensus 249 ~~v~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~-------------~~~~lp 315 (381)
T PRK08384 249 ERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVS-------------QASDLP 315 (381)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHh-------------ccCCCc
Confidence 0011222222234568999999999999999999999999999999999999999874311 111257
Q ss_pred ccccCCcCCHHHHHHHHHHHcC-Ccc
Q 041164 215 RCKPFKYTYEKEIMFTYAYFKR-LDY 239 (357)
Q Consensus 215 ~irPL~~~~k~EI~~~ya~~~~-i~~ 239 (357)
++|||..++|.||.. ||+..| +++
T Consensus 316 ilRPLi~~dK~EIi~-~Ar~iGT~~~ 340 (381)
T PRK08384 316 IYRPLIGMDKEEIVA-IAKTIGTFEL 340 (381)
T ss_pred EEeeCCCCCHHHHHH-HHHHcCCccc
Confidence 899999999999999 999999 543
No 24
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.88 E-value=1.2e-21 Score=189.38 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=126.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccC-CCH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYG-WTM 138 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~-~~i 138 (357)
-++|+||+|||+||++|+++|++. +|+ +++++|+|+|++ .++.+.++++|+++|++++++++++.|. ..+
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~-----~g~~~Viav~vd~g~~---~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i 73 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEK-----YGYDEVITVTVDVGQP---EEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYI 73 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHh-----cCCCEEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHH
Confidence 368999999999999999999764 477 999999999974 4567889999999999999999986553 112
Q ss_pred HHHHHH----hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh--HHH--HHHHHHHHccCccccccccccccCCC
Q 041164 139 DEIVKV----IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD--DIA--ETVLLNILRGDIARLSRCTLITTGED 210 (357)
Q Consensus 139 ~~~~~~----~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d--D~a--et~l~~l~rG~~~~l~~~~~~~~~~~ 210 (357)
....+. .+.+.+|..|+.+++..+.++|++.|+++|++|||++ |++ ++. +++.
T Consensus 74 ~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~----~~a~--------------- 134 (394)
T PRK13820 74 FPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAV----FRAS--------------- 134 (394)
T ss_pred HHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHh----hHhh---------------
Confidence 222221 2356788899999999999999999999999999655 987 333 2221
Q ss_pred CCccccccCCc--CCHHHHHHHHHHHcCCccccc-CCCCCCh
Q 041164 211 GPIPRCKPFKY--TYEKEIMFTYAYFKRLDYFST-ECIYSPN 249 (357)
Q Consensus 211 ~~i~~irPL~~--~~k~EI~~~ya~~~~i~~~~~-~~~~~~~ 249 (357)
.+.++.|+++ ++|+||+. ||+.+|||+..+ ..||+.+
T Consensus 135 -~l~viaP~re~~ltK~ei~~-ya~~~gip~~~~~~~~yS~d 174 (394)
T PRK13820 135 -DLEVIAPIRELNLTREWEIE-YAKEKGIPVPVGKEKPWSID 174 (394)
T ss_pred -cCeeeCchhccCCCHHHHHH-HHHHcCCCCCcCCCCCcccc
Confidence 1345778887 89999999 999999999754 3677654
No 25
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.88 E-value=6.8e-22 Score=198.03 Aligned_cols=188 Identities=18% Similarity=0.165 Sum_probs=141.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC----CCeEEEeeccccCCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG----LPLKIVSYKDLYGWT 137 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg----i~~~iv~~~~~~~~~ 137 (357)
++++|++|||+||+++++++.+. |+++.++|+|+|+........+.++.+++.++ ++++++++.+.++
T Consensus 178 gk~lvllSGGiDS~va~~~~~kr------G~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~-- 249 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRR------GSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFEPVVG-- 249 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHc------CCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecHHHHH--
Confidence 78999999999999999999986 89999999999986432224666777776665 5577777655432
Q ss_pred HHHHHHHhCCCCCchhHH-HHHH---HHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCc
Q 041164 138 MDEIVKVIGLKNNCTFCG-VFRR---QALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPI 213 (357)
Q Consensus 138 i~~~~~~~~~~~~c~~c~-~~r~---~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i 213 (357)
++.. ..+|.+|. ..|+ .+...+|++.|++.|+||||++|.+.+.+.|+..... . ..+
T Consensus 250 --~i~~----~~~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~-----------~--~~~ 310 (482)
T PRK01269 250 --EILE----KVDDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDN-----------V--TDT 310 (482)
T ss_pred --HHHh----cCCCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhh-----------h--cCC
Confidence 3322 22344444 4444 4448999999999999999999999999999766421 0 126
Q ss_pred cccccCCcCCHHHHHHHHHHHcCCcccccCCCC--CChhhHHHHHHHHHHHHHhCChhHHHHHHhh
Q 041164 214 PRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIY--SPNAYRGFAREFIKDLERLRPRAILDIIKSG 277 (357)
Q Consensus 214 ~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~--~~~~~r~~ir~~l~~Le~~~p~~~~~i~~t~ 277 (357)
.+.|||+.++|+||.. ||+..|++.++..||+ +....+..++..+..+++..|++..++++.+
T Consensus 311 ~v~rPLi~~dK~EIi~-~a~~ig~~~~s~~~p~~C~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 375 (482)
T PRK01269 311 LILRPLIAMDKEDIID-LAREIGTEDFAKTMPEYCGVISKKPTVKAVKEKIEAEEKKFDFAILDRV 375 (482)
T ss_pred ceecCCcCCCHHHHHH-HHHHhCChhhcccCCCCceeeCCCCcCCCCHHHHHHHhhcCCHHHHHHH
Confidence 6789999999999999 9999998655666776 3334667777888999988888866665554
No 26
>PRK14561 hypothetical protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=173.69 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=130.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+|++|||+||+++++++.++ +++.++|+++|+. .+.+.++++|+.+|+++++++++..+ .+...
T Consensus 2 kV~ValSGG~DSslll~~l~~~-------~~v~a~t~~~g~~----~e~~~a~~~a~~lGi~~~~v~~~~~~---~~~~~ 67 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-------YDVELVTVNFGVL----DSWKHAREAAKALGFPHRVLELDREI---LEKAV 67 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-------CCeEEEEEecCch----hHHHHHHHHHHHhCCCEEEEECCHHH---HHHHH
Confidence 7999999999999999988653 4678999999973 34789999999999999999987543 12221
Q ss_pred H-HhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCCc
Q 041164 143 K-VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKY 221 (357)
Q Consensus 143 ~-~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~ 221 (357)
. ......||..|..+++.++..++ .|+++|++|||+||.+++.+++.+++-. ...++.++|||..
T Consensus 68 ~~~~~~~~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~et~~r~~~~a~~------------~~~gi~iirPL~~ 133 (194)
T PRK14561 68 DMIIEDGYPNNAIQYVHEHALEALA--EEYDVIADGTRRDDRVPKLSRSEIQSLE------------DRKGVQYIRPLLG 133 (194)
T ss_pred HHHHHcCCCCchhHHHHHHHHHHHH--cCCCEEEEEecCCCcchhccHHHHhhhh------------cCCCcEEEeeCCC
Confidence 1 11345789999999999999888 8999999999999999999999877521 1123678999999
Q ss_pred CCHHHHHHHHHHHcCCcccccCC-CCCChhhHHHHHHHHHHH----HHhCC
Q 041164 222 TYEKEIMFTYAYFKRLDYFSTEC-IYSPNAYRGFAREFIKDL----ERLRP 267 (357)
Q Consensus 222 ~~k~EI~~~ya~~~~i~~~~~~~-~~~~~~~r~~ir~~l~~L----e~~~p 267 (357)
++|+||+. |++.+ +.+...++ +.....+...+|..+... ...||
T Consensus 134 ~~K~eI~~-la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (194)
T PRK14561 134 FGRKTIDR-LVERL-FEIEEGESEEIPKSDYETELRELLRERGGDPLEIFP 182 (194)
T ss_pred CCHHHHHH-HHHhh-EEEEeccCCCcCccchHHHHHHHHHHhCCChhHhCC
Confidence 99999999 99876 33333332 233334555555544332 34566
No 27
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.87 E-value=2.7e-23 Score=198.43 Aligned_cols=193 Identities=21% Similarity=0.290 Sum_probs=120.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC-------ChhhHHHHHHHHHHhCCCeEEEeecccc
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY-------RDDSLQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~-------~~~~~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
.||+||+|||+||++.+++|++. |++|+++|+....... ++++.+.++++|+.||||++++|+.+.|
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~------G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f 74 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ------GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEF 74 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC------T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHHhh------cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHH
Confidence 38999999999999999999997 9999999997665322 2356889999999999999999999888
Q ss_pred C-CCHHHHHHH---hCCCCCchhHHH-HHHHHHHHHHHH-CCCCEEEcCCChhHHHH--HHHHHHHccCccccccccccc
Q 041164 135 G-WTMDEIVKV---IGLKNNCTFCGV-FRRQALDRGASL-LKVDKIATGHNADDIAE--TVLLNILRGDIARLSRCTLIT 206 (357)
Q Consensus 135 ~-~~i~~~~~~---~~~~~~c~~c~~-~r~~~l~~~A~~-~g~~~I~tGh~~dD~ae--t~l~~l~rG~~~~l~~~~~~~ 206 (357)
. ..++.+.+. +.+||||..|+. +++.+|.++|.+ .|+++|||||.+.-.-. +-...|.+|....-....-+.
T Consensus 75 ~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~ 154 (356)
T PF03054_consen 75 WEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLS 154 (356)
T ss_dssp HHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGT
T ss_pred HHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEE
Confidence 5 455555543 457999999987 678999999999 99999999999842100 000012222111100000000
Q ss_pred cCCCC-CccccccCCcCCHHHHHHHHHHHcCCccccc-----CCCCCChhhHHHHHHHHHH
Q 041164 207 TGEDG-PIPRCKPFKYTYEKEIMFTYAYFKRLDYFST-----ECIYSPNAYRGFAREFIKD 261 (357)
Q Consensus 207 ~~~~~-~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~-----~~~~~~~~~r~~ir~~l~~ 261 (357)
..... .-..+.||.+++|.||+. +|+..|++..+. -|......++.+++++++.
T Consensus 155 ~l~~~~L~~~~FPLG~~~K~eVR~-iA~~~gl~~a~k~eSq~iCFi~~~~~~~fl~~~~~~ 214 (356)
T PF03054_consen 155 RLPQEQLSRLIFPLGELTKEEVRE-IAREAGLPVAEKKESQGICFIGDGDYREFLKRYLPE 214 (356)
T ss_dssp T--HHHHCCEE-TCCCS-HHHHHH-HHHHCT-TTTT-----SSTTTCCCHHHHHHCTTS--
T ss_pred ecCHHHHHhhcCCCCCCCHHHHHH-HHHhcCCcccCccccceEEEecCCcHHHhhhhcccc
Confidence 00000 123578999999999999 999999996542 2777777788888777664
No 28
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.87 E-value=2.1e-21 Score=182.25 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=124.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
++++|++||||||++|||++.++... .++++.++|||+|.. .++..+++.++++.+|++++++...+..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~--~~~~~~vl~iDTG~~--FpEt~ef~d~~a~~~gl~l~v~~~~~~i------- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYP--GKLPFPLLHVDTGWK--FPEMIEFRDRRAKELGLELIVHSNPEGI------- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcc--cCCCeeEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEEeChHHH-------
Confidence 68999999999999999999987432 246788999999984 4778899999999999999998764321
Q ss_pred HHH--hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHH-------ccCccccccccccc------
Q 041164 142 VKV--IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNIL-------RGDIARLSRCTLIT------ 206 (357)
Q Consensus 142 ~~~--~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~-------rG~~~~l~~~~~~~------ 206 (357)
... ....++|..|+.+++..|.++++++|++++++||+.||.....-..++ .++.. .+.|..
T Consensus 97 ~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~r~~~~~wd~~---~q~Pelw~~~~~ 173 (301)
T PRK05253 97 ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSFRDEFGQWDPK---NQRPELWNLYNG 173 (301)
T ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCccccccccccccCcc---ccChhhhhhccc
Confidence 111 112357999999999999999999999999999999997665422222 12111 111110
Q ss_pred cCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 207 TGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 207 ~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
....+...+|+||.+|++.|||. |+..+|||+..
T Consensus 174 ~~~~g~~~rV~PL~~Wte~DIw~-Yi~~~~IP~~p 207 (301)
T PRK05253 174 RINKGEHIRVFPLSNWTELDIWQ-YIERENIPIVP 207 (301)
T ss_pred cccCCCeEEEeehhhCCHHHHHH-HHHHcCCCCCc
Confidence 01223466799999999999999 99999999743
No 29
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=99.87 E-value=4.1e-22 Score=158.68 Aligned_cols=102 Identities=35% Similarity=0.668 Sum_probs=90.5
Q ss_pred ccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHHHHHHHHHHhCChhHHHHHHhhhhccccccc--cCcc
Q 041164 213 IPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERLRPRAILDIIKSGENFRISTST--KMPE 290 (357)
Q Consensus 213 i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir~~l~~Le~~~p~~~~~i~~t~~~l~~~~~~--~~~~ 290 (357)
+++||||..++++||.. ||..+|||++..+|||+.++.|..++++|.+||+.+|++..+|+++..++...... ....
T Consensus 1 v~rIRPL~~v~E~ei~~-ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~~~~~~ 79 (104)
T TIGR00269 1 VPRIKPLRYIPEKEVVL-YAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKELSEQED 79 (104)
T ss_pred CCcccccccCCHHHHHH-HHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhccccccc
Confidence 46799999999999999 99999999999999999999999999999999999999999999999777632111 2235
Q ss_pred cccccccccccccccchhhHHHHHh
Q 041164 291 QGTCERCGYISSQKWCKACVLLEGL 315 (357)
Q Consensus 291 ~~~C~~Cg~p~~~~~c~~c~~~~~~ 315 (357)
.+.|++||+||++++|++|++++.|
T Consensus 80 ~~~C~~CG~pss~~iC~~C~l~~~~ 104 (104)
T TIGR00269 80 LRRCERCGEPTSGRICKACKFLEEL 104 (104)
T ss_pred CCcCCcCcCcCCccccHhhhhhhhC
Confidence 6889999999999999999998654
No 30
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.87 E-value=5.5e-21 Score=185.54 Aligned_cols=152 Identities=21% Similarity=0.251 Sum_probs=122.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh---C--CCeEEEeeccccC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY---G--LPLKIVSYKDLYG 135 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l---g--i~~~iv~~~~~~~ 135 (357)
+++++|++|||+||+++++++.+. |+++.++|+|+|.. .++++.+.++++|+.+ + ++++++++.+.+
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~kr------G~~V~av~~~~~~~-~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~~~- 243 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKR------GCRVVAVHFFNEPA-ASEKAREKVERLANSLNETGGSVKLYVFDFTDVQ- 243 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHc------CCeEEEEEEeCCCC-ccHHHHHHHHHHHHHHhhcCCCceEEEEeCHHHH-
Confidence 478999999999999999999886 89999999998863 2456688899999988 3 467777765432
Q ss_pred CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 136 WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 136 ~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
+++.........|..|+.+++.++.++|+++|+++|+||||++|.+++++.|+.--. ....+.+
T Consensus 244 ---~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~-------------~~~~~~I 307 (371)
T TIGR00342 244 ---EEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQ-------------AVSNTPI 307 (371)
T ss_pred ---HHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHh-------------ccCCCCE
Confidence 333322234568999999999999999999999999999999999988888853211 0113668
Q ss_pred cccCCcCCHHHHHHHHHHHcCC
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRL 237 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i 237 (357)
+|||+.++|.||+. ||+..|.
T Consensus 308 ~rPLi~~~K~EIi~-~a~~iG~ 328 (371)
T TIGR00342 308 LRPLIGMDKEEIIE-LAKEIGT 328 (371)
T ss_pred EeCCCCCCHHHHHH-HHHHhCC
Confidence 99999999999999 9999995
No 31
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.87 E-value=7.9e-22 Score=170.35 Aligned_cols=161 Identities=24% Similarity=0.279 Sum_probs=124.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
+|+|++|||+||++||+++.+...+ ..++.++|+|+|.. .++..++++++++.+|+++.++..............
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~---~~~~~~v~~dtg~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 75 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE---LKPVPVIFLDTGYE--FPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGL 75 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc---ccCceEEEeCCCCC--CHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhh
Confidence 4899999999999999999987321 13789999999984 577889999999999999999877543211000000
Q ss_pred HH--hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC
Q 041164 143 KV--IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK 220 (357)
Q Consensus 143 ~~--~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~ 220 (357)
.. ....+.|..|+.+|+..+.+++++.|.+.+++||++||..++.+++...+. ...+.+.+++||.
T Consensus 76 ~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~~~------------~~~~~~~~~~Pl~ 143 (173)
T cd01713 76 KGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVWTD------------DGKGGILKVNPLL 143 (173)
T ss_pred hccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCcccccc------------CCCCCcEEEcchh
Confidence 00 123456677889999999999999999999999999999998877665111 1123466899999
Q ss_pred cCCHHHHHHHHHHHcCCcccc
Q 041164 221 YTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~ 241 (357)
+|++.||+. |++.+|+|+..
T Consensus 144 ~w~~~di~~-~~~~~~l~~~~ 163 (173)
T cd01713 144 DWTYEDVWA-YLARHGLPYNP 163 (173)
T ss_pred cCCHHHHHH-HHHHcCCCCCH
Confidence 999999999 99999998743
No 32
>PRK08576 hypothetical protein; Provisional
Probab=99.86 E-value=1e-20 Score=184.89 Aligned_cols=203 Identities=16% Similarity=0.180 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHH
Q 041164 37 RECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKR 116 (357)
Q Consensus 37 ~~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~ 116 (357)
..||++.+++++.++++++. +++|+|++|||+||++||+++.+.. + ++.++|+|+|.. .++..+++++
T Consensus 214 N~~~le~~e~~~~~~Lr~~~----~~rVvVafSGGKDStvLL~La~k~~-----~-~V~aV~iDTG~e--~pet~e~~~~ 281 (438)
T PRK08576 214 NREVLEAFEKASIKFLRKFE----EWTVIVPWSGGKDSTAALLLAKKAF-----G-DVTAVYVDTGYE--MPLTDEYVEK 281 (438)
T ss_pred hHHHHHHHHHHHHHHHHHcC----CCCEEEEEcChHHHHHHHHHHHHhC-----C-CCEEEEeCCCCC--ChHHHHHHHH
Confidence 56999999999999999874 3489999999999999999998872 2 489999999973 4677899999
Q ss_pred HHHHhCCCeEEEeeccccCCCHHHHHHHhC-CCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccC
Q 041164 117 NEIQYGLPLKIVSYKDLYGWTMDEIVKVIG-LKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGD 195 (357)
Q Consensus 117 ~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~-~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~ 195 (357)
+++.+|+++++.+.+ ........+ ...+|.+|..+++..|.+++++.|++++++||.. |+..+ |..
T Consensus 282 lae~LGI~lii~~v~------~~~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~-dES~~------R~~ 348 (438)
T PRK08576 282 VAEKLGVDLIRAGVD------VPMPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRD-GESAR------RRL 348 (438)
T ss_pred HHHHcCCCEEEcccC------HHHHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeH-HHhHH------hhc
Confidence 999999999883221 111111112 2346889999999999999999999999999974 44322 111
Q ss_pred ccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc-----------cCCCCCChhhHHHHH--HHHHHH
Q 041164 196 IARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS-----------TECIYSPNAYRGFAR--EFIKDL 262 (357)
Q Consensus 196 ~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~-----------~~~~~~~~~~r~~ir--~~l~~L 262 (357)
.+.+. . .....+++.+++||.+|+++||+. |+..+|||+.. ..||+........++ ++++.+
T Consensus 349 ~p~v~---~-~~~~~~~v~rI~PL~~Wte~DV~~-YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~~~e~~~~~~~~~~~~~ 423 (438)
T PRK08576 349 RPPVV---E-RKTNFGKILVVMPIKFWSGAMVQL-YILMNGLELNPLYYKGFYRLGCYICPSLRSWEIELLKRLPVLPLI 423 (438)
T ss_pred CCccc---c-cccCCCCeEEEeChhhCCHHHHHH-HHHHhCCCCCcHHhCCCCccCCcCCcchHhHHHHHHhcccchhhh
Confidence 11110 0 000113477899999999999999 99999999743 238877665555554 355555
Q ss_pred HHhCChh
Q 041164 263 ERLRPRA 269 (357)
Q Consensus 263 e~~~p~~ 269 (357)
-+..|..
T Consensus 424 ~~~~~~~ 430 (438)
T PRK08576 424 LKKRPLY 430 (438)
T ss_pred hccccch
Confidence 4555543
No 33
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.1e-21 Score=182.89 Aligned_cols=194 Identities=22% Similarity=0.286 Sum_probs=139.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC-----CCCChhhHHHHHHHHHHhCCCeEEEeeccccC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI-----SGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYG 135 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~-----~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~ 135 (357)
..||+||+|||+||++.+++|+++ |++|.++|+.... ...+.++...++++|+.+|||++++++.+.|.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~Q------GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~ 76 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQ------GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFW 76 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHc------CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHH
Confidence 469999999999999999999998 9999999996544 12356678899999999999999999998875
Q ss_pred C-CHHHHHHH---hCCCCCchhH-HHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCC
Q 041164 136 W-TMDEIVKV---IGLKNNCTFC-GVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGED 210 (357)
Q Consensus 136 ~-~i~~~~~~---~~~~~~c~~c-~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~ 210 (357)
. .++.+... +.++|||..| +.+++..|.++|.++|+++|||||.+.-.-..--..+.||....-....-+.....
T Consensus 77 ~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~ 156 (356)
T COG0482 77 NKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQ 156 (356)
T ss_pred HHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCH
Confidence 2 23333332 4579999999 78899999999999999999999998422100011234443322111111111111
Q ss_pred -CCccccccCCcCCHHHHHHHHHHHcCCcccccC-----CCCCChhhHHHHHHHHHH
Q 041164 211 -GPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTE-----CIYSPNAYRGFAREFIKD 261 (357)
Q Consensus 211 -~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~-----~~~~~~~~r~~ir~~l~~ 261 (357)
..-..+.||.++.|.||+. .|...|++...-+ |......++.++.+++|.
T Consensus 157 ~ql~~~lFPlG~l~K~evR~-iA~~~gL~~a~KkdS~~ICFi~~~~~~~fl~~~~p~ 212 (356)
T COG0482 157 EQLERLLFPLGDLEKLEVRP-IAAEKGLPTAKKKDSQGICFIGERKFKDFLGRYLPA 212 (356)
T ss_pred HHHhhccccCCCCCHHHHHH-HHHHcCCCccCcccCCcceecCCCCHHHHHHhhCCC
Confidence 1123478999999999999 9999999875422 665556677776666664
No 34
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.85 E-value=1.2e-20 Score=173.98 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg 122 (357)
.+.+.+++.+++. ..++|+|++|||+||+++++++.+. .+.++.+++++++.. .+..+.+.++++|+.+|
T Consensus 8 ~l~~~l~~~v~~~----~~~~V~vglSGGiDSsvla~l~~~~-----~~~~~~~~~~~~~~~-~~~~e~~~a~~~a~~lg 77 (250)
T TIGR00552 8 EIEDFLRGYVQKS----GAKGVVLGLSGGIDSAVVAALCVEA-----LGEQNHALLLPHSVQ-TPEQDVQDALALAEPLG 77 (250)
T ss_pred HHHHHHHHHHHHh----CCCCEEEECCCcHHHHHHHHHHHHh-----hCCceEEEEECCccC-CCHHHHHHHHHHHHHhC
Confidence 3444444444442 4578999999999999999999886 255889999998753 24567899999999999
Q ss_pred CCeEEEeeccccCCCHHHHHHHh-CC---CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc
Q 041164 123 LPLKIVSYKDLYGWTMDEIVKVI-GL---KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR 198 (357)
Q Consensus 123 i~~~iv~~~~~~~~~i~~~~~~~-~~---~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~ 198 (357)
++++++++.+.+.. ........ .. ...|.+|..+|+.+|..+|+++|+.+|+|||+.++. .|..
T Consensus 78 i~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~---------~G~~-- 145 (250)
T TIGR00552 78 INYKNIDIAPIAAS-FQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELM---------LGYF-- 145 (250)
T ss_pred CeEEEEcchHHHHH-HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHh---------hCCe--
Confidence 99999998765431 00000000 01 134889999999999999999999999999998753 2321
Q ss_pred cccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCccc
Q 041164 199 LSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYF 240 (357)
Q Consensus 199 l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~ 240 (357)
+...+....++||.+++|.||+. ||+.+|+|..
T Consensus 146 --------t~~gd~~~~i~PL~~l~K~eV~~-lA~~~g~p~~ 178 (250)
T TIGR00552 146 --------TKYGDGGCDIAPIGDLFKTQVYE-LAKRLNVPER 178 (250)
T ss_pred --------ecccCCccCccccCCCcHHHHHH-HHHHHCccHH
Confidence 11112234699999999999999 9999999863
No 35
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.84 E-value=2.4e-20 Score=180.38 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=127.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccC-CCHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYG-WTMD 139 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~-~~i~ 139 (357)
++|+||+|||+||++++++|++. +|++|+++|+|.|+. ++.+.++++|+.+|+ +++++++.+.|. ..+.
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~-----lG~eViavt~d~Gq~----~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~ 73 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKET-----YGCEVIAFTADVGQG----EELEPIREKALKSGASEIYVEDLREEFVRDYVF 73 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHh-----hCCeEEEEEEecCCH----HHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHH
Confidence 68999999999999999999874 388999999999974 568899999999997 688889987663 1122
Q ss_pred HHHHH-----hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCCCC
Q 041164 140 EIVKV-----IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGEDGP 212 (357)
Q Consensus 140 ~~~~~-----~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~ 212 (357)
...+. ...+++|+.|+...+..+.++|++.|+++|++|||+ +|+...-.. +.. ....
T Consensus 74 ~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~~g---------~~a-------l~pe 137 (399)
T PRK00509 74 PAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFELG---------IAA-------LAPD 137 (399)
T ss_pred HHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHHHHH---------HHH-------hCCC
Confidence 22222 347899999999999999999999999999999999 998743110 110 0112
Q ss_pred ccccccCCcC---CHHHHHHHHHHHcCCccccc-CCCCCCh
Q 041164 213 IPRCKPFKYT---YEKEIMFTYAYFKRLDYFST-ECIYSPN 249 (357)
Q Consensus 213 i~~irPL~~~---~k~EI~~~ya~~~~i~~~~~-~~~~~~~ 249 (357)
+.++.||+++ +|+|++. ||+.+|||+... ..||+.+
T Consensus 138 l~VisPlre~~~~tK~eir~-~A~~~Gipv~~~~~~~yS~d 177 (399)
T PRK00509 138 LKVIAPWREWDLKSREELIA-YAEEHGIPIPVTKKSPYSID 177 (399)
T ss_pred CeeecchhhcCCCCHHHHHH-HHHHcCCCCCCCCCCCCccc
Confidence 4578999987 9999999 999999998643 3567643
No 36
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.83 E-value=1.6e-19 Score=160.86 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=124.7
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWT 137 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~ 137 (357)
++...+++||||||+||++|+.++.+. +|-++.+++||.+. ....+.+.+..+|+++||.|.++++....
T Consensus 14 ik~~~kv~vAfSGGvDSslLa~la~~~-----lG~~v~AvTv~sP~--~p~~e~e~A~~~A~~iGi~H~~i~~~~~~--- 83 (269)
T COG1606 14 IKEKKKVVVAFSGGVDSSLLAKLAKEA-----LGDNVVAVTVDSPY--IPRREIEEAKNIAKEIGIRHEFIKMNRMD--- 83 (269)
T ss_pred HhhcCeEEEEecCCccHHHHHHHHHHH-----hccceEEEEEecCC--CChhhhhHHHHHHHHhCCcceeeehhhcc---
Confidence 344559999999999999999999886 48899999999865 34567899999999999999999886431
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccc
Q 041164 138 MDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCK 217 (357)
Q Consensus 138 i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ir 217 (357)
.++. .+..++|.+|....+..|.+.|.+.|+++|+-|.|++|+- +..+.+... . ...+--
T Consensus 84 -~~~~--~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~---------~~RPG~rA~------k--E~gi~s 143 (269)
T COG1606 84 -PEFK--ENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLF---------DYRPGLRAL------K--ELGIRS 143 (269)
T ss_pred -hhhc--cCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhc---------CCCcchhhH------H--hcCCCC
Confidence 2333 2577899999999999999999999999999999999953 221111100 0 122355
Q ss_pred cCCc--CCHHHHHHHHHHHcCCcccc---cCCCCC
Q 041164 218 PFKY--TYEKEIMFTYAYFKRLDYFS---TECIYS 247 (357)
Q Consensus 218 PL~~--~~k~EI~~~ya~~~~i~~~~---~~~~~~ 247 (357)
||.+ ++++||+. |++..|+++++ ..|..+
T Consensus 144 Pl~e~gitk~eIre-~a~~lgl~~~~kp~~aCl~s 177 (269)
T COG1606 144 PLAEFGITKKEIRE-IAKSLGLPTWDKPSMACLAS 177 (269)
T ss_pred hHHHhCCcHHHHHH-HHHHcCCCcccCcccccccc
Confidence 8875 89999999 99999999984 346543
No 37
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.83 E-value=9.1e-20 Score=169.81 Aligned_cols=166 Identities=19% Similarity=0.154 Sum_probs=124.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
+.+|++||||||+||||++.++... .+.++.++|||+|+. .++..+++.++++.+|++++++..++..+.++..+.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~--~~~p~~vl~IDTG~~--F~Et~efrd~~a~~~gl~l~v~~~~~~~~~g~~~~~ 96 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYP--GPLPFPLLHVDTGWK--FREMIAFRDHMVAKYGLRLIVHSNEEGIADGINPFT 96 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcc--cCCCeEEEEEecCCC--CHHHHHHHHHHHHHhCCCEEEEechhhhhcCccccc
Confidence 4578999999999999999987432 146789999999984 577899999999999999999988654433332221
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHH-------ccCccccccccccc------cCC
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNIL-------RGDIARLSRCTLIT------TGE 209 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~-------rG~~~~l~~~~~~~------~~~ 209 (357)
..+...|+.++...|.+++.++|++++++||+.||...+.-.+++ .++.. ...|.. ...
T Consensus 97 -----~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~sRake~i~s~r~~~~~wD~~---~q~Pelw~~~~~~~~ 168 (294)
T TIGR02039 97 -----EGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRNAFHQWDPK---KQRPELWNLYNGRIS 168 (294)
T ss_pred -----cChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhhHhhcCceeeccccccccCcc---ccCchhhhccccccc
Confidence 123447899999999999999999999999999999876532222 22211 111100 011
Q ss_pred CCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 210 DGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 210 ~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
.|...++.||.+|++.|||. |+..+|||+..
T Consensus 169 ~g~~~RV~PL~~WTe~DVW~-YI~~~~IP~~p 199 (294)
T TIGR02039 169 KGESVRVFPLSNWTELDIWR-YIAAENIPIVP 199 (294)
T ss_pred cCCcEEEechhhCCHHHHHH-HHHHcCCCCCc
Confidence 23456789999999999999 99999999854
No 38
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.83 E-value=3.7e-20 Score=165.32 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=123.1
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCC---H--
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWT---M-- 138 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~---i-- 138 (357)
++|++|||+||+++++++.+. |.++.++|+|+|.. ...+.+.++++|+.+|+++++++++...... +
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~------g~~v~~~~~~~~~~--~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~~ 72 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE------GYEVHAITFDYGQR--HSRELESARKIAEALGIEHHVIDLSLLKQLGGSALTD 72 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc------CCcEEEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEEechhhcccccccccC
Confidence 489999999999999999875 77999999999974 3567889999999999999999886421100 0
Q ss_pred ----HHHHHHh--CCCCCchhHHHHHH-HHHHHHHHHCCCCEEEcCCChhHHH------HHHHHHHHccCcccccccccc
Q 041164 139 ----DEIVKVI--GLKNNCTFCGVFRR-QALDRGASLLKVDKIATGHNADDIA------ETVLLNILRGDIARLSRCTLI 205 (357)
Q Consensus 139 ----~~~~~~~--~~~~~c~~c~~~r~-~~l~~~A~~~g~~~I~tGh~~dD~a------et~l~~l~rG~~~~l~~~~~~ 205 (357)
....... ..+..|..|+...+ .++..+|+++|++.|++|||+||.+ +++++++-.... .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~--------~ 144 (201)
T TIGR00364 73 ESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALN--------L 144 (201)
T ss_pred CCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHH--------h
Confidence 0000000 12345666776665 8889999999999999999999974 455555443211 0
Q ss_pred ccCCCCCccccccCCcCCHHHHHHHHHHHcC---CcccccCCCCCC
Q 041164 206 TTGEDGPIPRCKPFKYTYEKEIMFTYAYFKR---LDYFSTECIYSP 248 (357)
Q Consensus 206 ~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~---i~~~~~~~~~~~ 248 (357)
.....+++++||..++|.||+. +++.+| +++..+++++..
T Consensus 145 --~~~~~~~i~~Pl~~~~K~eI~~-la~~~g~~~~~~~~t~sC~~~ 187 (201)
T TIGR00364 145 --GMLTPVKIRAPLMDLTKAEIVQ-LADELGVLDLVIKLTYSCYAG 187 (201)
T ss_pred --hcCCCeEEEECCcCCCHHHHHH-HHHHcCCccccHhhCCcCCCc
Confidence 0122377899999999999999 999999 887777776653
No 39
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.81 E-value=1.9e-19 Score=174.12 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=125.3
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC-eEEEeeccccC--CCHHH
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP-LKIVSYKDLYG--WTMDE 140 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~-~~iv~~~~~~~--~~i~~ 140 (357)
|+||+|||+||++++++|++. .+.+|+++|+|+|+. .+..+.+++.|+.+|++ ++++++++.|. ...+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~-----~~~eV~av~~d~Gq~---~~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~ 72 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK-----GGYEVIAVTADVGQP---EEEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPA 72 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh-----CCCeEEEEEEECCCc---chhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHH
Confidence 689999999999999999885 256999999999974 23348899999999996 99999987664 22333
Q ss_pred HHHH----hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh--HHHHHHHHHHHccCccccccccccccCCCCCcc
Q 041164 141 IVKV----IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD--DIAETVLLNILRGDIARLSRCTLITTGEDGPIP 214 (357)
Q Consensus 141 ~~~~----~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d--D~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~ 214 (357)
+... ...+.+|+.|+.+....+.++|++.|+++|++|+|.+ |+...- .+ + ......+.
T Consensus 73 i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~-----~~----~-------~al~pel~ 136 (385)
T cd01999 73 IQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFE-----LA----F-------YALNPDLK 136 (385)
T ss_pred HHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHH-----HH----H-------HhhCCCCE
Confidence 3321 1255678889999999999999999999999999974 765211 01 0 01112366
Q ss_pred ccccCCcC---CHHHHHHHHHHHcCCccccc-CCCCCCh
Q 041164 215 RCKPFKYT---YEKEIMFTYAYFKRLDYFST-ECIYSPN 249 (357)
Q Consensus 215 ~irPL~~~---~k~EI~~~ya~~~~i~~~~~-~~~~~~~ 249 (357)
++.||+++ +|+|++. |++.+|||+... .|||+.+
T Consensus 137 ViaPlre~~~~sr~ev~~-~A~~~Gip~~~~~~~pyS~d 174 (385)
T cd01999 137 IIAPWRDWEFLSREEEIE-YAEEHGIPVPVTKKKPYSID 174 (385)
T ss_pred EEcchhhhhcCCHHHHHH-HHHHcCCCCcccCCCCCccC
Confidence 89999999 9999999 999999999876 6999865
No 40
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.81 E-value=2.7e-19 Score=164.05 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=123.8
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCe
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPL 125 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~ 125 (357)
+.++.+++++ +++|+|++||||||+||||++.+. +.++.++++|+|+ +.++..++++++++.+|+++
T Consensus 30 e~i~~a~~~~-----~~~i~vs~SGGKDS~vlL~L~~~~------~~~i~vvfiDTG~--~~pet~e~~~~~~~~~gl~l 96 (241)
T PRK02090 30 ERLAWALENF-----GGRLALVSSFGAEDAVLLHLVAQV------DPDIPVIFLDTGY--LFPETYRFIDELTERLLLNL 96 (241)
T ss_pred HHHHHHHHHc-----CCCEEEEecCCHHHHHHHHHHHhc------CCCCcEEEecCCC--CCHHHHHHHHHHHHHhCCCE
Confidence 3455555543 346999999999999999999996 6689999999998 57899999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHhC--C---CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccc
Q 041164 126 KIVSYKDLYGWTMDEIVKVIG--L---KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLS 200 (357)
Q Consensus 126 ~iv~~~~~~~~~i~~~~~~~~--~---~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~ 200 (357)
++++.+..+ +.......+ . ..+|..|+.++...|.+++++.++ +++||+.|+-... ...
T Consensus 97 ~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~R-------~~~---- 160 (241)
T PRK02090 97 KVYRPDASA---AEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGTR-------ANL---- 160 (241)
T ss_pred EEECCCccH---HHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCchh-------ccC----
Confidence 999876432 111111111 1 467899999999999999999887 8899998874321 111
Q ss_pred cccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 201 RCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 201 ~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
+.... ++.+.+++||.+|+.+||+. |+..+|||+..
T Consensus 161 ---~~~~~-~~~~~rv~Pi~~Wt~~dV~~-Yi~~~~lp~~p 196 (241)
T PRK02090 161 ---PVLEI-DGGRFKINPLADWTNEDVWA-YLKEHDLPYHP 196 (241)
T ss_pred ---ceeee-cCCeEEEeehhhCCHHHHHH-HHHHcCCCCCh
Confidence 11111 12467899999999999999 99999999754
No 41
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.81 E-value=6.2e-19 Score=171.06 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=121.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccCCC--HH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYGWT--MD 139 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~~~--i~ 139 (357)
+|+||+|||+||++++++|++. |++|+++|+|+|++ .++.+.++++|+.+|+ +++++++++.|... ..
T Consensus 1 kVvla~SGGlDSsvll~~l~e~------g~~V~av~id~Gq~---~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~~~~ 71 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK------GYEVIAYTADVGQP---EEDIDAIPEKALEYGAENHYTIDAREEFVKDYGFA 71 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc------CCEEEEEEEecCCC---hHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhhchh
Confidence 5899999999999999999885 88999999999974 5678899999999997 89999998666311 12
Q ss_pred HHHHH----hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCCCCc
Q 041164 140 EIVKV----IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGEDGPI 213 (357)
Q Consensus 140 ~~~~~----~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i 213 (357)
.+... ...+..++.+|.+++..+.++|++.|+++|++||+. ||++. +.+..... .. .+
T Consensus 72 ~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvr--f~r~~~~~-------------~~-~l 135 (394)
T TIGR00032 72 AIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQER--FERSIRLL-------------NP-DL 135 (394)
T ss_pred hhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHH--HHHHHHHh-------------CC-CC
Confidence 22110 002223334668899999999999999999999987 47653 22222111 01 25
Q ss_pred cccccC--CcCCHHHHHHHHHHHcCCcccccC-CCCCCh
Q 041164 214 PRCKPF--KYTYEKEIMFTYAYFKRLDYFSTE-CIYSPN 249 (357)
Q Consensus 214 ~~irPL--~~~~k~EI~~~ya~~~~i~~~~~~-~~~~~~ 249 (357)
.++.|| ..++++|+.. |+..+|||+..+. +||+.+
T Consensus 136 ~viaPLrew~l~r~ei~~-ya~~~Gip~~~~~~~pys~d 173 (394)
T TIGR00032 136 KVIAPWRDLNFTREEEIE-YAIQCGIPYPMSKEKPYSID 173 (394)
T ss_pred eEECchhhcCCCHHHHHH-HHHHcCCCeeEecCCCCcCC
Confidence 689999 5599999999 9999999997664 788655
No 42
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.80 E-value=5.1e-19 Score=153.61 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=107.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+|++|||+||+++++++.+. ++++.++|+|+|... ..+.+.++++++.+| |+..++...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~------~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~~~~~~---------- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE------GYEVHALSFDYGQRH--AKEEEAAKLIAEKLG-PSTYVPARN---------- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc------CCcEEEEEEECCCCC--hhHHHHHHHHHHHHC-CCEEEeCcC----------
Confidence 5899999999999999999886 778999999998752 335688999999999 554443210
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH------HHHHHHHHccCccccccccccccCCCCCcccc
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA------ETVLLNILRGDIARLSRCTLITTGEDGPIPRC 216 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a------et~l~~l~rG~~~~l~~~~~~~~~~~~~i~~i 216 (357)
...+.++.++|.+.|+++|++||++||.+ ++++..+.. +... .....+.++
T Consensus 62 -------------~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~v~ 118 (169)
T cd01995 62 -------------LIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNK--------ALNL--GTENGIKIH 118 (169)
T ss_pred -------------HHHHHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHHHHHH--------HHHh--hcCCCeEEE
Confidence 13446788999999999999999999963 222222111 0000 112347789
Q ss_pred ccCCcCCHHHHHHHHHHHcCCcccccCCCCCC
Q 041164 217 KPFKYTYEKEIMFTYAYFKRLDYFSTECIYSP 248 (357)
Q Consensus 217 rPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~ 248 (357)
+||..++|.||+. |++.+|+|+..+.++..+
T Consensus 119 ~PL~~~~K~ei~~-~~~~~g~~~~~s~sC~~~ 149 (169)
T cd01995 119 APLIDLSKAEIVR-LGGELGVPLELTWSCYNG 149 (169)
T ss_pred eCcccCCHHHHHH-HHhHcCCChhheeeccCC
Confidence 9999999999999 999999999887765544
No 43
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.80 E-value=8.4e-19 Score=158.69 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=125.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC-eEEEeecccc---CCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP-LKIVSYKDLY---GWT 137 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~-~~iv~~~~~~---~~~ 137 (357)
++++|+||||+||+++|+++.+. +.++.++++|+|++. ..+++.++++|+.+|++ +++++++... +..
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~------~~~v~alt~dygq~~--~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~ 73 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ------YDEVHCVTFDYGQRH--RAEIDVARELALKLGARAHKVLDVTLLNELAVSS 73 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc------CCeEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 47999999999999999999763 458999999999863 56789999999999996 9999887432 111
Q ss_pred H-------HHHHH-HhCCCCCchhHHHHHHHHHHH-HHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccccccccccc-
Q 041164 138 M-------DEIVK-VIGLKNNCTFCGVFRRQALDR-GASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITT- 207 (357)
Q Consensus 138 i-------~~~~~-~~~~~~~c~~c~~~r~~~l~~-~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~- 207 (357)
+ +.... ..+.++.|..||.+.+-.+.. +|...|++.|++|-|++|.... --++...+..+.....
T Consensus 74 Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~Y-----pDcr~~Fi~A~~~~~~~ 148 (231)
T PRK11106 74 LTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGY-----PDCRDEFVKALNHAVSL 148 (231)
T ss_pred cccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCC-----CCCCHHHHHHHHHHHHh
Confidence 1 11100 123567899999999876665 8999999999999999985310 0000000111111100
Q ss_pred CCCCCccccccCCcCCHHHHHHHHHHHcC-Ccc--cccCCCCCC
Q 041164 208 GEDGPIPRCKPFKYTYEKEIMFTYAYFKR-LDY--FSTECIYSP 248 (357)
Q Consensus 208 ~~~~~i~~irPL~~~~k~EI~~~ya~~~~-i~~--~~~~~~~~~ 248 (357)
.....+.+..||.+++|.||+. ++...| +|+ ..++++|..
T Consensus 149 ~~~~~i~I~aPl~~lsK~eI~~-l~~~lg~v~~~~~~T~SCy~g 191 (231)
T PRK11106 149 GMAKDIRFETPLMWLNKAETWA-LADYYGQLDLVRHETLTCYNG 191 (231)
T ss_pred ccCCCcEEEecCCCCCHHHHHH-HHHHcCCcccccCceeeccCc
Confidence 0112377899999999999999 999999 988 778888865
No 44
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.79 E-value=1.1e-18 Score=170.86 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=118.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC-----CCeEEEeeccccC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG-----LPLKIVSYKDLYG 135 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg-----i~~~iv~~~~~~~ 135 (357)
+++++|++|||+||+++++++.+. |+++.++|++..- ..++.+.+.+.++|+.++ ++++++++.+..
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k~------G~~v~av~~~~~~-~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~~~- 247 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMKR------GVEIEAVHFHSPP-YTSERAKEKVIDLARILAKYGGRIKLHVVPFTEIQ- 247 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHHC------CCEEEEEEEeCCC-CCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHHHH-
Confidence 478999999999999999999885 8999999995421 113556778888888884 999999986542
Q ss_pred CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 136 WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 136 ~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
+.+.........|..|+.+++.++..+|.+.|+++|+||||++|.+++++.++. +-. ....+.+
T Consensus 248 ---~~i~~~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~-~i~------------~~~~~~V 311 (394)
T PRK01565 248 ---EEIKKKVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMY-AIN------------AVTNLPV 311 (394)
T ss_pred ---HHHhhcCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHH-HHh------------hccCcEE
Confidence 233321112234889999999999999999999999999999999877766653 210 0012668
Q ss_pred cccCCcCCHHHHHHHHHHHcCC
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRL 237 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i 237 (357)
+|||+.++|.||+. +|+..|+
T Consensus 312 ~rPLig~~K~EI~~-lAr~iG~ 332 (394)
T PRK01565 312 LRPLIGMDKEEIIE-IAKEIGT 332 (394)
T ss_pred EECCCCCCHHHHHH-HHHHhCC
Confidence 99999999999999 9999997
No 45
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.79 E-value=7.1e-19 Score=170.43 Aligned_cols=162 Identities=18% Similarity=0.259 Sum_probs=122.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC-eEEEeeccccC--CCH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP-LKIVSYKDLYG--WTM 138 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~-~~iv~~~~~~~--~~i 138 (357)
++|+||+|||+||++++++|++. +|++|+++|+|.|+. .++.+.++++|+.+|++ ++++++.++|. ...
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~-----~G~eViav~id~Gq~---~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i~ 77 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLREN-----YGCEVVCFTADVGQG---IEELEGLEAKAKASGAKQLVVKDLREEFVRDYIF 77 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHh-----hCCeEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhcC
Confidence 69999999999999999999873 378999999999973 45688999999999997 58888887763 122
Q ss_pred HHHHHHhCCCCCchhHHH-----HHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCCC
Q 041164 139 DEIVKVIGLKNNCTFCGV-----FRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGEDG 211 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~-----~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~ 211 (357)
+.+.. +..-..|.+|+. +....+.++|++.|+++|++||++ +|+...-.. +.. ...
T Consensus 78 p~i~~-Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~~---------~~a-------l~p 140 (404)
T PLN00200 78 PCLRA-NAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELT---------FFA-------LNP 140 (404)
T ss_pred HHHHc-CCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHHH---------HHH-------hCC
Confidence 22221 122256777755 888999999999999999999999 998742110 000 111
Q ss_pred CccccccCCcCC---HHHHHHHHHHHcCCcccccC-CCCCCh
Q 041164 212 PIPRCKPFKYTY---EKEIMFTYAYFKRLDYFSTE-CIYSPN 249 (357)
Q Consensus 212 ~i~~irPL~~~~---k~EI~~~ya~~~~i~~~~~~-~~~~~~ 249 (357)
.+.++.||+++. |+|++. ||+.+|||+...+ .||+.+
T Consensus 141 el~ViaPlre~~~~~r~e~~~-~A~~~Gipv~~~~~~~yS~D 181 (404)
T PLN00200 141 ELKVVAPWREWDIKGREDLIE-YAKKHNIPVPVTKKSIYSRD 181 (404)
T ss_pred CCeeeCchhhcCCCCHHHHHH-HHHHcCCCCCCCCCCCCccc
Confidence 245789999864 999999 9999999976554 567654
No 46
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.77 E-value=1.6e-18 Score=167.12 Aligned_cols=162 Identities=15% Similarity=0.056 Sum_probs=124.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccCC-CH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYGW-TM 138 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~~-~i 138 (357)
.++|+||+|||+||+++++++++. |++|+++++|.|+.. .++.+.++++|..+|+ +++++++++.|.. .+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~------G~~Viavt~d~gq~~--~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi 73 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER------GYAVHTVFADTGGVD--AEERDFIEKRAAELGAASHVTVDGGPAIWEGFV 73 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc------CCcEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHH
Confidence 368999999999999999999885 889999999999853 5678999999999998 6999999987741 12
Q ss_pred HHHH-----HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCC--hhHHHHHHHHHHHccCccccccccccccCCCC
Q 041164 139 DEIV-----KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHN--ADDIAETVLLNILRGDIARLSRCTLITTGEDG 211 (357)
Q Consensus 139 ~~~~-----~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~--~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~ 211 (357)
..+. .++.++++|. -|.++...+.++|++.|+++|++|+| .||+...- .. +. ...
T Consensus 74 ~p~i~aNa~y~G~yPl~~~-nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfr------pg---~~-------Al~- 135 (400)
T PRK04527 74 KPLVWAGEGYQGQYPLLVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFD------LA---VK-------ALG- 135 (400)
T ss_pred HHHHhcchhhcCCCCCccc-cHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhcc------HH---HH-------Hhh-
Confidence 2111 1233677774 57778899999999999999999999 89986421 10 00 011
Q ss_pred CccccccCCcC------CHHHHHHHHHHHcCCcccccCCCCCCh
Q 041164 212 PIPRCKPFKYT------YEKEIMFTYAYFKRLDYFSTECIYSPN 249 (357)
Q Consensus 212 ~i~~irPL~~~------~k~EI~~~ya~~~~i~~~~~~~~~~~~ 249 (357)
.+.++.||+++ .++|... ||+.+|||+..+.-+|+.+
T Consensus 136 el~ViaPlre~~~~k~~~R~~~i~-ya~~~gipv~~~~~~yS~D 178 (400)
T PRK04527 136 DYQIVAPIREIQKEHTQTRAYEQK-YLEERGFGVRAKQKAYTIN 178 (400)
T ss_pred cCCccchHHHhcCcccccHHHHHH-HHHHcCCCCCCCCCCcccc
Confidence 35578899875 6788899 9999999986655557643
No 47
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.77 E-value=8.3e-18 Score=161.76 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=120.8
Q ss_pred cccccccCCCceeeccCCCccchHHHHHHH---------HHHHHHHHHhhcCCCCCC-CEEEEEecCChhHHHHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFYEV---------FEEEIHQVIVGNQLFKAG-ERIAIGASGGKDSTVLAFVLSE 83 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~---------~~~kv~~~i~k~~l~~~~-~kvlVa~SGG~DS~~LL~ll~~ 83 (357)
..|++|..+...-.+..+...+|..|.... -++++.+.+.+++-...+ -.++||+|||+||+++++++.+
T Consensus 2 ~~C~~C~~~~t~p~i~fd~~GvC~~C~~~~~~~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~ 81 (343)
T TIGR03573 2 KFCKRCVMPTTRPGITFDEDGVCSACRNFEEKSKIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKK 81 (343)
T ss_pred CcCCCCCCCCCCCCeeECCCCCchhhhhHHhhcCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHH
Confidence 359999876544455567889999997632 234566666665432222 3599999999999999999865
Q ss_pred HhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHH--hCCCCCchhHHHHHHHH
Q 041164 84 LNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKV--IGLKNNCTFCGVFRRQA 161 (357)
Q Consensus 84 ~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~--~~~~~~c~~c~~~r~~~ 161 (357)
. +|.++.++|+|+|+. ++...+.++++++.+|++++++..+... +..+.+. .....||..|...++..
T Consensus 82 ~-----~gl~~l~vt~~~~~~--~e~~~~n~~~~~~~lgvd~~~i~~d~~~---~~~l~~~~~~~~~~pc~~c~~~~~~~ 151 (343)
T TIGR03573 82 K-----LGLNPLLVTVDPGWN--TELGVKNLNNLIKKLGFDLHTITINPET---FRKLQRAYFKKVGDPEWPQDHAIFAS 151 (343)
T ss_pred H-----hCCceEEEEECCCCC--CHHHHHHHHHHHHHcCCCeEEEeCCHHH---HHHHHHHHHhccCCCchhhhhHHHHH
Confidence 3 378899999999984 4666789999999999999999875321 1111111 24568999999999999
Q ss_pred HHHHHHHCCCCEEEcCCChhH
Q 041164 162 LDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 162 l~~~A~~~g~~~I~tGh~~dD 182 (357)
+.++|++.|+.+|++|||+|.
T Consensus 152 l~~~A~~~gi~~Il~G~~~dE 172 (343)
T TIGR03573 152 VYQVALKFNIPLIIWGENIAE 172 (343)
T ss_pred HHHHHHHhCCCEEEeCCCHHH
Confidence 999999999999999999994
No 48
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.76 E-value=3.4e-18 Score=150.58 Aligned_cols=152 Identities=21% Similarity=0.257 Sum_probs=102.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh---C----CCeEEEeeccc
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY---G----LPLKIVSYKDL 133 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l---g----i~~~iv~~~~~ 133 (357)
..|+++.+|||.||.++++++.+. |.+|.++|++.+.-+ .+...+.++++++.+ + ++++++++.+.
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~kr------G~~V~~l~f~~~~~~-~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~ 75 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKR------GCEVIALHFDSPPFT-GEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEV 75 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCB------T-EEEEEEEE-TTTS-SCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHH
T ss_pred CceEEEEecCCccHHHHHHHHHHC------CCEEEEEEEECCCCC-CHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHH
Confidence 358999999999999999999997 999999999843311 233344555555543 2 56777776544
Q ss_pred cCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCc
Q 041164 134 YGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPI 213 (357)
Q Consensus 134 ~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i 213 (357)
+ .++.......++|..|+.+.++...++|++.|++.|+||.++.+.+.+.+.|+..=+. .. ..
T Consensus 76 ~----~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~-----------~~--~~ 138 (197)
T PF02568_consen 76 Q----KEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVIES-----------AS--DL 138 (197)
T ss_dssp H----HHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHHGG-----------G----S
T ss_pred H----HHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhhhc-----------cc--CC
Confidence 3 4444444456899999999999999999999999999999999988888877654321 11 25
Q ss_pred cccccCCcCCHHHHHHHHHHHcCC
Q 041164 214 PRCKPFKYTYEKEIMFTYAYFKRL 237 (357)
Q Consensus 214 ~~irPL~~~~k~EI~~~ya~~~~i 237 (357)
+++|||+.+.|.||.. +|+..|.
T Consensus 139 pIlRPLig~dK~EIi~-~Ar~Igt 161 (197)
T PF02568_consen 139 PILRPLIGFDKEEIIE-IARKIGT 161 (197)
T ss_dssp -EE-TTTT--HHHHHH-HHHHTT-
T ss_pred ceeCCcCCCCHHHHHH-HHHHhCc
Confidence 6899999999999999 9999995
No 49
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.75 E-value=2e-17 Score=154.68 Aligned_cols=169 Identities=17% Similarity=0.095 Sum_probs=122.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
++++|++||||||+||||++.++... .+..+.++|||+|. ..++..++..++++.+|++++++...+.+...+..
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~--~~~~~pvl~VDTG~--~FpEt~efrD~~a~~~gl~Liv~~~~~~~~~G~~~- 112 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRP--TRPPFPLLHVDTTW--KFREMIDFRDRRAKELGLDLVVHHNPDGIARGIVP- 112 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcc--cCCCeeEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEecChHHHHhCCCc-
Confidence 45789999999999999999987322 14577899999998 36888999999999999999998654332111100
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHc-------cCcc----ccccccccccCCC
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILR-------GDIA----RLSRCTLITTGED 210 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~r-------G~~~----~l~~~~~~~~~~~ 210 (357)
-...++..|+.++...|.++..++|++++++|+..|+.....-+.++. ++.. .+...... ....
T Consensus 113 ----~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~r~~~~~wD~~~qrPelw~~~n~-~~~~ 187 (312)
T PRK12563 113 ----FRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAFHRWDPKAQRPELWSLYNA-RLRR 187 (312)
T ss_pred ----ccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecccccccccCccccChhhhhhccc-cccC
Confidence 013467788889999999999999999999999999977654333322 1100 00000000 0112
Q ss_pred CCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 211 GPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 211 ~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
|...+|.||.+|++.|||. |+..++||+..
T Consensus 188 g~~~RV~PL~~WTe~DVW~-YI~~~~IP~~p 217 (312)
T PRK12563 188 GESLRVFPLSNWTELDVWQ-YIAREKIPLVP 217 (312)
T ss_pred CceEEEecchhCCHHHHHH-HHHHcCCCCCc
Confidence 3456789999999999999 99999999743
No 50
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.75 E-value=1.5e-17 Score=153.17 Aligned_cols=168 Identities=14% Similarity=0.088 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
..+...++..+++. ..++|+|++|||+||+++++++.+... ..++.+++++++.. ++.+.+.++++|+.+
T Consensus 8 ~~l~~~l~~~~~~~----~~~~vvv~lSGGiDSs~~a~la~~~~~----~~~v~~~~~~~~~~--~~~~~~~a~~~a~~l 77 (248)
T cd00553 8 NALVLFLRDYLRKS----GFKGVVLGLSGGIDSALVAALAVRALG----RENVLALFMPSRYS--SEETREDAKELAEAL 77 (248)
T ss_pred HHHHHHHHHHHHHh----CCCCEEEeCCCcHHHHHHHHHHHHHhC----cccEEEEECCCCCC--CHHHHHHHHHHHHHh
Confidence 33444445555442 346899999999999999999998721 26899999998863 466789999999999
Q ss_pred CCCeEEEeeccccCCCHHHHHHHh-CCC---CCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcc
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVI-GLK---NNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIA 197 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~-~~~---~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~ 197 (357)
|++++++++.+.+......+.... ... ..|..|..+|+..|..+|.+.|+.++.|||- +|..+ |-.
T Consensus 78 gi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn~----~E~~~-----G~~- 147 (248)
T cd00553 78 GIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGNK----SELLL-----GYF- 147 (248)
T ss_pred CCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCcH----hHHHh-----CCe-
Confidence 999999998766543222222100 111 2377888999999999999999999999983 23322 211
Q ss_pred ccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 198 RLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
+...+....++||.+++|.||+. +|+..|+|.
T Consensus 148 ---------t~~gd~~~~i~Pl~~l~K~eV~~-la~~~~ip~ 179 (248)
T cd00553 148 ---------TKYGDGAADINPIGDLYKTQVRE-LARYLGVPE 179 (248)
T ss_pred ---------eccCCcccCccccCCCcHHHHHH-HHHHHCchH
Confidence 11111234699999999999999 999999985
No 51
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.74 E-value=2.5e-17 Score=147.51 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=102.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccCCCHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~~~i~~~ 141 (357)
|++|.+|||+||+++|+++++. ++++.+++||+|++ .+.+++.++++|+.+|+ ++++++++....+.-..+
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~------~~~v~al~~~YGq~--~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L 72 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE------GYEVYALTFDYGQR--HRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSAL 72 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-------SEEEEEEEESSST--TCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHc------CCeEEEEEEECCCC--CHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcc
Confidence 6899999999999999999987 78999999999998 56778999999999999 999999873321111111
Q ss_pred HHH-----------hCCCCCchhHH-HHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccccccccccc-C
Q 041164 142 VKV-----------IGLKNNCTFCG-VFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITT-G 208 (357)
Q Consensus 142 ~~~-----------~~~~~~c~~c~-~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~-~ 208 (357)
... ...++.-..-| .+...+...+|...|++.|++|.|.+|.... -..+...+..+..... .
T Consensus 73 ~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~y-----pDc~~~F~~~~~~~~~~~ 147 (209)
T PF06508_consen 73 TDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGY-----PDCRPEFIDAMNRLLNLG 147 (209)
T ss_dssp HHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT-------GGGSHHHHHHHHHHHHHH
T ss_pred cCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCC-----CCChHHHHHHHHHHHHhc
Confidence 110 01111111223 3344666778999999999999999884210 0000000111110000 0
Q ss_pred CCCCccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCCh
Q 041164 209 EDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPN 249 (357)
Q Consensus 209 ~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~ 249 (357)
..+.+.+..||.+++|.||+. .+...|+|+..++++|...
T Consensus 148 ~~~~v~i~~P~~~~tK~eiv~-~~~~lg~~~~~T~SCy~~~ 187 (209)
T PF06508_consen 148 EGGPVRIETPLIDLTKAEIVK-LGVELGVPLELTWSCYRGG 187 (209)
T ss_dssp HTS--EEE-TTTT--HHHHHH-HHHHTTHHHHH-B-STTS-
T ss_pred CCCCEEEEecCCCCCHHHHHH-HHHHcCCCHHHccCCCCCC
Confidence 123478899999999999999 9999999998888888663
No 52
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.73 E-value=3.5e-17 Score=130.41 Aligned_cols=103 Identities=32% Similarity=0.398 Sum_probs=81.2
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHH
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK 143 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~ 143 (357)
|+|++|||+||+++++++.++ +.++.++|+|+|+++ +.+...++|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL------GYQVIAVTVDHGISP----RLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh------CCCEEEEEEcCCCcc----cHHHHHHHHHH-----------------------
Confidence 589999999999999999997 558999999999864 23445555555
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC
Q 041164 144 VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK 220 (357)
Q Consensus 144 ~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~ 220 (357)
+|+..+.++|++.|+++|++|||+||++++.+++.. +...... .....+.+++||+
T Consensus 48 -------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~------~~~~~~~--~~~~~~~~~~Pl~ 103 (103)
T cd01986 48 -------------AREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA------LLNLTVT--LSGAGIQSLEPLI 103 (103)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH------HhcCCCC--cccCcceEeecCC
Confidence 678889999999999999999999999999999988 1111121 1223467788974
No 53
>PRK13980 NAD synthetase; Provisional
Probab=99.73 E-value=1e-16 Score=149.06 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHH
Q 041164 38 ECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRN 117 (357)
Q Consensus 38 ~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~ 117 (357)
+...+.+...+++.+.++++ ++|+|++|||+||+++++++.+... +.++.++|++++.. ++.+.+.++.+
T Consensus 11 ~~~~~~l~~~l~~~v~~~g~----~~vvv~lSGGiDSsv~a~l~~~~~~----~~~v~av~~~~~~~--~~~~~~~a~~l 80 (265)
T PRK13980 11 EKVREIIVDFIREEVEKAGA----KGVVLGLSGGIDSAVVAYLAVKALG----KENVLALLMPSSVS--PPEDLEDAELV 80 (265)
T ss_pred HHHHHHHHHHHHHHHHHcCC----CcEEEECCCCHHHHHHHHHHHHHhC----ccceEEEEeeCCCC--CHHHHHHHHHH
Confidence 44455566666666666543 6899999999999999999998621 36899999999863 45678899999
Q ss_pred HHHhCCCeEEEeeccccCCCHHHHHHHh---CCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHcc
Q 041164 118 EIQYGLPLKIVSYKDLYGWTMDEIVKVI---GLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRG 194 (357)
Q Consensus 118 ~~~lgi~~~iv~~~~~~~~~i~~~~~~~---~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG 194 (357)
|+.+|++++++++...+ +.+.... .....|.+|..+|+.+|..+|++.|+.++.||+. ++.+ .|
T Consensus 81 a~~lgi~~~~i~i~~~~----~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~-sE~~--------~G 147 (265)
T PRK13980 81 AEDLGIEYKVIEITPIV----DAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK-SELL--------LG 147 (265)
T ss_pred HHHhCCCeEEEECHHHH----HHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH-hHHH--------hC
Confidence 99999999999986543 1221111 1234578899999999999999999988888854 3321 23
Q ss_pred CccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 195 DIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 195 ~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
-+ +...+....+.||.+++|.||+. .|+..|+|
T Consensus 148 ~~----------t~~gD~~~~l~Pl~~l~K~eV~~-la~~lgip 180 (265)
T PRK13980 148 YF----------TKYGDGAVDLNPIGDLYKTQVRE-LARHLGVP 180 (265)
T ss_pred Cc----------cCCCCcccCcccCCCCcHHHHHH-HHHHHCch
Confidence 21 11111223489999999999999 99999999
No 54
>PLN02347 GMP synthetase
Probab=99.69 E-value=1.1e-16 Score=161.34 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=113.7
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWT 137 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~ 137 (357)
+.+.++|+||+|||+||+++++++++. .|.++.++++|+|+...+ +..+.++.+|+.+|++++++++++.|-..
T Consensus 226 ~~~~~~vvvalSGGVDSsvla~l~~~a-----lG~~v~av~id~g~~~~~-E~~~~~~~~a~~lgi~~~vvd~~e~fl~~ 299 (536)
T PLN02347 226 VGPDEHVICALSGGVDSTVAATLVHKA-----IGDRLHCVFVDNGLLRYK-EQERVMETFKRDLHLPVTCVDASERFLSK 299 (536)
T ss_pred hccCCeEEEEecCChhHHHHHHHHHHH-----hCCcEEEEEEeCCCCChh-HHHHHHHHHHHHcCCcEEEEeCcHHHHhh
Confidence 445688999999999999999999995 378999999999996543 33455588999999999999998654111
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHH----HHCCC--CEEEcCCChhHHHHHHHHHHHc-cC----ccccccccccc
Q 041164 138 MDEIVKVIGLKNNCTFCGVFRRQALDRGA----SLLKV--DKIATGHNADDIAETVLLNILR-GD----IARLSRCTLIT 206 (357)
Q Consensus 138 i~~~~~~~~~~~~c~~c~~~r~~~l~~~A----~~~g~--~~I~tGh~~dD~aet~l~~l~r-G~----~~~l~~~~~~~ 206 (357)
++.+ .+....|.+|+......+.+.+ .++|. +.++.|++++|+.|+. .| |. ...+..-..+.
T Consensus 300 l~~~---~~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~----~r~g~~~~~~~~ik~hhn~~ 372 (536)
T PLN02347 300 LKGV---TDPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESC----PPPGSGRTHSHTIKSHHNVG 372 (536)
T ss_pred CCCC---CChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCccccccccc----CCCCCccccccceeeecccc
Confidence 1111 1223457888874445555444 44555 8999999999987641 01 11 00011111110
Q ss_pred cCC-CCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 207 TGE-DGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 207 ~~~-~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
... .-...++.||.+++|.||+. +++.+|+|
T Consensus 373 ~l~~~~~~~ii~PL~~l~K~eVR~-la~~lgl~ 404 (536)
T PLN02347 373 GLPKDMKLKLIEPLKLLFKDEVRK-LGRLLGVP 404 (536)
T ss_pred cChHHHHCccccchhhCcHHHHHH-HHHHcCCC
Confidence 000 11244688999999999999 99999999
No 55
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.68 E-value=3.8e-16 Score=138.41 Aligned_cols=169 Identities=20% Similarity=0.168 Sum_probs=120.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc---CCC-
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY---GWT- 137 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~---~~~- 137 (357)
.+.+|.+|||.||+++|+++++. +++|+++++|+|++. ..+++.++++++.||+++++++++-.. +..
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~------~~ev~alsfdYGQrh--~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saL 74 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKE------GYEVHALTFDYGQRH--RKELEAAKELAKKLGVPHHIIDVDLLGEIGGSAL 74 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhc------CCEEEEEEeeCCCCc--HHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcC
Confidence 58999999999999999999996 799999999999985 777999999999999999999986332 111
Q ss_pred HHH---HHHHh--C--CCCCchhHHH-HHHHHHHHHHHHCCCCEEEcCCChhHHHH------HHHHHHHccCcccccccc
Q 041164 138 MDE---IVKVI--G--LKNNCTFCGV-FRRQALDRGASLLKVDKIATGHNADDIAE------TVLLNILRGDIARLSRCT 203 (357)
Q Consensus 138 i~~---~~~~~--~--~~~~c~~c~~-~r~~~l~~~A~~~g~~~I~tGh~~dD~ae------t~l~~l~rG~~~~l~~~~ 203 (357)
+++ +.... . .++.-..-|. +...+...+|..+|++.|++|-|..|... -++.. +..+.
T Consensus 75 td~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a--------~~~~~ 146 (222)
T COG0603 75 TDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEA--------LNEAL 146 (222)
T ss_pred cCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCCCHHHHHH--------HHHHH
Confidence 111 11110 0 1222222333 44577778999999999999999988531 00000 00011
Q ss_pred ccccCCCCCcc-ccccCCcCCHHHHHHHHHHHcCCcccccCCCCCCh
Q 041164 204 LITTGEDGPIP-RCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPN 249 (357)
Q Consensus 204 ~~~~~~~~~i~-~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~ 249 (357)
... ....+. +..||.+++|.||+. .+.+.|.|+..++++|...
T Consensus 147 ~l~--~~~~~~~i~aPl~~l~Ka~iv~-l~~elg~~~~~T~SCY~g~ 190 (222)
T COG0603 147 NLG--TEKGVRIIHAPLMELTKAEIVK-LADELGVPLELTWSCYNGG 190 (222)
T ss_pred Hhh--ccCCccEEeCCeeeccHHHHHH-HHHHhCCcchhceEEeCCC
Confidence 111 111233 478999999999999 9999999999998888654
No 56
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.3e-16 Score=145.40 Aligned_cols=195 Identities=19% Similarity=0.195 Sum_probs=129.1
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEec-------CCCCCCChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSID-------EGISGYRDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id-------~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
+.-++|+||+|||+||++.+++|+.. |+++.+|++- .|-..-.+.+.+.++++|++|+||++.+++.
T Consensus 3 ~~~~~VvvamSgGVDSsVaa~Ll~~~------g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~ 76 (377)
T KOG2805|consen 3 EKPDRVVVAMSGGVDSSVAARLLAAR------GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFV 76 (377)
T ss_pred cccceEEEEecCCchHHHHHHHHHhc------CCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeH
Confidence 34579999999999999999999997 9999999882 2322234566889999999999999999998
Q ss_pred cccC-CCHHHHHHH---hCCCCCchhHHH-HHHHHHHHHHHH-CCCCEEEcCCChhHHHHHHH---HHHHccCccccccc
Q 041164 132 DLYG-WTMDEIVKV---IGLKNNCTFCGV-FRRQALDRGASL-LKVDKIATGHNADDIAETVL---LNILRGDIARLSRC 202 (357)
Q Consensus 132 ~~~~-~~i~~~~~~---~~~~~~c~~c~~-~r~~~l~~~A~~-~g~~~I~tGh~~dD~aet~l---~~l~rG~~~~l~~~ 202 (357)
.+|. ...+.+.+. +.+++|-..|+. +++..+.++|.+ +|+++|+|||.+.-..+... ..++.+.... ...
T Consensus 77 kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~-KDQ 155 (377)
T KOG2805|consen 77 KEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMV-KDQ 155 (377)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeeccccc-CCc
Confidence 7764 223333332 357899999975 567756666654 79999999999864332211 1111111100 000
Q ss_pred cccccCCC-CCc-cccccCCcCCHHHHHHHHHHHcCCcccccC-----CCCCChh-hHHHHHHHHHH
Q 041164 203 TLITTGED-GPI-PRCKPFKYTYEKEIMFTYAYFKRLDYFSTE-----CIYSPNA-YRGFAREFIKD 261 (357)
Q Consensus 203 ~~~~~~~~-~~i-~~irPL~~~~k~EI~~~ya~~~~i~~~~~~-----~~~~~~~-~r~~ir~~l~~ 261 (357)
+-+..... ..+ ..+.||..++|.|+.. .|+..|+|.-+.+ |...... +++++.++|+.
T Consensus 156 t~FL~~in~~~L~r~lfPlg~~~K~eVk~-lA~~~gf~~aeK~eSqGICFvgk~~~F~dFl~~yi~~ 221 (377)
T KOG2805|consen 156 TYFLSTINQTQLKRLLFPLGCLTKSEVKK-LAKQAGFPNAEKPESQGICFVGKIKHFSDFLQRYIGS 221 (377)
T ss_pred eeEeecccHHHHHhhhccCcccCHHHHHH-HHHhcCCccccCcccceeEEeccchhHHHHHHHhcCC
Confidence 00000000 011 2367999999999999 9999999954322 5554433 66666666653
No 57
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.67 E-value=5.6e-16 Score=132.34 Aligned_cols=111 Identities=25% Similarity=0.361 Sum_probs=87.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
.++|++|||+||+++|+++.+. .+.++.++|+|+|+. ++++.+.++++|+. |+++..+.++...- .+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~-----~~~~v~~v~~~~g~~--~~~~~~~~~~~a~~-g~~~~~~~~~~~~~--~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK-----YGLNPLAVTVDNGFN--SEEAVKNIKNLIKK-GLDLDHLVINPEEM--KDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH-----hCCceEEEEeCCCCC--CHHHHHHHHHHHHh-CCCeEEEecCHHHH--HHHHH
Confidence 4899999999999999999875 134889999999985 46667899999999 88876665432110 01111
Q ss_pred HH--hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 143 KV--IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 143 ~~--~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
.. .....||..|+.+++.++.++|++.|+++|++||++|+.
T Consensus 73 ~~l~~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~ 115 (154)
T cd01996 73 ARFKAKVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQE 115 (154)
T ss_pred HHHhcccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHh
Confidence 11 135689999999999999999999999999999999985
No 58
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.61 E-value=1e-14 Score=131.46 Aligned_cols=159 Identities=21% Similarity=0.232 Sum_probs=118.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHH-HHhCCCeEEEeecccc-----
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNE-IQYGLPLKIVSYKDLY----- 134 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~-~~lgi~~~iv~~~~~~----- 134 (357)
++++++|+|||+||++++.+++++ .|-++.+++||||+ .+..+.+.+.+.. +.+|+++.+++..+.|
T Consensus 21 ~~kvi~alSGGVDSsv~a~L~~~A-----iGd~l~cvfVD~GL--lR~~E~e~V~~~f~~~~~~nl~~VdA~~~Fl~~L~ 93 (315)
T COG0519 21 DGKVILALSGGVDSSVAAVLAHRA-----IGDQLTCVFVDHGL--LRKGEAEQVVEMFREHLGLNLIVVDAKDRFLSALK 93 (315)
T ss_pred CceEEEEecCCCcHHHHHHHHHHH-----hhcceEEEEecCCc--ccCCcHHHHHHHHHhhcCCceEEEchHHHHHHHhc
Confidence 579999999999999999999997 47899999999998 4555566666654 4599999999987665
Q ss_pred CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCC-CCc
Q 041164 135 GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGED-GPI 213 (357)
Q Consensus 135 ~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~-~~i 213 (357)
|.+-.+..+.. -+..-.+.+.+.|+++++++++-|.-..|.+|+. .|....+..-.++.-... =.+
T Consensus 94 GvtDPE~KRKi--------IG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~-----~g~~~~IKSHHNVGGLP~~m~l 160 (315)
T COG0519 94 GVTDPEEKRKI--------IGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESG-----TGKAGTIKSHHNVGGLPEDMKL 160 (315)
T ss_pred CCCCHHHHHHH--------HHHHHHHHHHHHHHhCCcceEEecccccceeeec-----CCCCCccccccccCCCccccce
Confidence 44444444331 1334567889999999999999999999998874 333222222222211111 135
Q ss_pred cccccCCcCCHHHHHHHHHHHcCCccc
Q 041164 214 PRCKPFKYTYEKEIMFTYAYFKRLDYF 240 (357)
Q Consensus 214 ~~irPL~~~~k~EI~~~ya~~~~i~~~ 240 (357)
.++-||+++.|+|++. .+..+|||..
T Consensus 161 kLvEPLr~LfKDEVR~-lg~~LGlp~~ 186 (315)
T COG0519 161 KLVEPLRELFKDEVRE-LGRELGLPEE 186 (315)
T ss_pred eeeHHHHHHhHHHHHH-HHHHhCCCHH
Confidence 6799999999999999 9999999854
No 59
>PRK08557 hypothetical protein; Provisional
Probab=99.59 E-value=5.2e-14 Score=137.62 Aligned_cols=182 Identities=20% Similarity=0.154 Sum_probs=120.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
+..++|++|||+||+++|+++.++ +.++.++|+|+|. ..++..++++++++.+|+++++++.+ .+ .+
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~------~~~i~vvfvDTG~--efpET~e~ve~v~~~ygl~i~v~~~~-~f----~~ 247 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEV------IPDLEVIFIDTGL--EYPETINYVKDFAKKYDLNLDTLDGD-NF----WE 247 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHh------CCCCEEEEEECCC--CCHHHHHHHHHHHHHhCCCEEEEech-HH----HH
Confidence 457999999999999999999886 4467889999997 36888999999999999999998643 11 11
Q ss_pred HHHHhCC--CCCchhHHHHHHHHHHHHHHH---CCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 141 IVKVIGL--KNNCTFCGVFRRQALDRGASL---LKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 141 ~~~~~~~--~~~c~~c~~~r~~~l~~~A~~---~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
.....+. .....-|..++..-+.++.++ .+....++|...++-.... ....... .+ ... ....
T Consensus 248 ~~~~~G~Ps~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~Ra-------~~~~~~~-~~---~~~-~~~~ 315 (417)
T PRK08557 248 NLEKEGIPTKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFTRA-------NLDYERK-SG---FID-FQTN 315 (417)
T ss_pred HHhhccCCcccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchhhc-------cCceecc-cc---ccc-Ccee
Confidence 1111122 222223456677777777766 3445778999888754321 1111000 00 011 1235
Q ss_pred cccCCcCCHHHHHHHHHHHcCCccccc-----------CCCCCChhhHHHHHHHHHHHHHhCCh
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLDYFST-----------ECIYSPNAYRGFAREFIKDLERLRPR 268 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~~~~~-----------~~~~~~~~~r~~ir~~l~~Le~~~p~ 268 (357)
++|+.+|+..||+. |...+++|+... .||+...+.-..+++..|++-+.+-.
T Consensus 316 i~PI~~Wt~~dVW~-YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~k~~~ 378 (417)
T PRK08557 316 VFPILDWNSLDIWS-YIYLNDILYNPLYDKGFERIGCYLCPSALNSEFLRVKELYPELFNRWVK 378 (417)
T ss_pred EEecccCCHHHHHH-HHHHcCCCCCchhhCCCCCCCccCCCCccHHHHHHHHHHCHHHHHHHHH
Confidence 79999999999999 999999998541 27776554444445555554444333
No 60
>PRK05370 argininosuccinate synthase; Validated
Probab=99.59 E-value=1.6e-14 Score=139.60 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=126.0
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccC-
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYG- 135 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~- 135 (357)
+.+++||++|+|||.||++++.+|++- +++|+++++|.|+. ..++.+.+++-|..+|. +++++|++++|-
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e~------~~eVia~~aDvGQ~--~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e 79 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQK------GAVPYAYTANLGQP--DEDDYDAIPRRAMEYGAENARLIDCRAQLVA 79 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHhc------CCeEEEEEEECCCC--CccchHHHHHHHHHhCCCEEEEeccHHHHHH
Confidence 567899999999999999999999985 89999999999974 13457889999999998 799999998773
Q ss_pred CCHHHHHHHh--------CCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCcccccccccc
Q 041164 136 WTMDEIVKVI--------GLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLI 205 (357)
Q Consensus 136 ~~i~~~~~~~--------~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~ 205 (357)
.-++.+.-.. ..+......+.+....+.++|++.|+++|+.|.+. +|++..-+. +..
T Consensus 80 ~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~---------~~a---- 146 (447)
T PRK05370 80 EGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRY---------GLL---- 146 (447)
T ss_pred HHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHH---------HHH----
Confidence 1122222111 13344566788889999999999999999999974 677632111 000
Q ss_pred ccCCCCCccccccCCcC-------CHHHHHHHHHHHcCCccccc-CCCCCCh
Q 041164 206 TTGEDGPIPRCKPFKYT-------YEKEIMFTYAYFKRLDYFST-ECIYSPN 249 (357)
Q Consensus 206 ~~~~~~~i~~irPL~~~-------~k~EI~~~ya~~~~i~~~~~-~~~~~~~ 249 (357)
....+.+|.|+++| +++|... |++.+|||+..+ ..||+.+
T Consensus 147 ---L~P~l~ViaPwRd~~~~~~f~sR~e~i~-Ya~~hGIpv~~~~~~~ySiD 194 (447)
T PRK05370 147 ---TNPELKIYKPWLDQDFIDELGGRAEMSE-FLIAHGFDYKMSVEKAYSTD 194 (447)
T ss_pred ---hCCCCeEecchhhhhcccccCCHHHHHH-HHHHcCCCCCccCCCCccCc
Confidence 11136678999876 8999999 999999998644 3567654
No 61
>PRK13795 hypothetical protein; Provisional
Probab=99.57 E-value=3.2e-14 Score=146.94 Aligned_cols=205 Identities=19% Similarity=0.147 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
+.++.+....|++.... .+++|+|++|||+||++||+++.+. ..++.++++|+|. ..++..++++++++.+
T Consensus 225 ~~~~~~ai~~Ir~~~~~-~~~~v~Va~SGGKDS~vll~L~~~a------~~~~~vvfiDTg~--efpet~e~v~~~~~~~ 295 (636)
T PRK13795 225 EEKEKEAVNFIRGVAEK-YNLPVSVSFSGGKDSLVVLDLAREA------LKDFKAFFNNTGL--EFPETVENVKEVAEEY 295 (636)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCEEEEecCcHHHHHHHHHHHHh------CCCcEEEEEeCCC--CCHHHHHHHHHHHHHc
Confidence 34444555555543211 1468999999999999999999987 3457899999998 3578899999999999
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHCC--CCEEEcCCChhHHHHHHHHHHHccCcc
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLK--NNCTFCGVFRRQALDRGASLLK--VDKIATGHNADDIAETVLLNILRGDIA 197 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~--~~c~~c~~~r~~~l~~~A~~~g--~~~I~tGh~~dD~aet~l~~l~rG~~~ 197 (357)
|+++++++..+.|...++ ..+.+ .....|..++..-+.++.++.. ....++|-..++-....- ..
T Consensus 296 gi~i~~~~~~~~f~~~~~----~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~~-------~~ 364 (636)
T PRK13795 296 GIELIEADAGDAFWRAVE----KFGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRAK-------SP 364 (636)
T ss_pred CCcEEEEcccHhHHHhhh----ccCCCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHhh-------Cc
Confidence 999999877644421111 11111 1223356666777777776652 246788999988654321 11
Q ss_pred ccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc-----------cCCCCCChhhHHHHHHHHHHHHHhC
Q 041164 198 RLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS-----------TECIYSPNAYRGFAREFIKDLERLR 266 (357)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~-----------~~~~~~~~~~r~~ir~~l~~Le~~~ 266 (357)
.+.. .........+.|+.+|+..||+. |...+++|+.. -.||+........+++.-|++.+.+
T Consensus 365 ~~~~-----~~~~~~~~~~~PI~~Wt~~dVw~-YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~~e~~~~~~~~Pe~~~~~ 438 (636)
T PRK13795 365 RVWR-----NPWVPNQIGASPIQDWTALEVWL-YIFWRKLPYNPLYERGFDRIGCWLCPSSSLAEFERLKELHPELYEKW 438 (636)
T ss_pred cccc-----CCCCCCcEEEechHhCCHHHHHH-HHHHhCCCCChHHHCCCCCCCccCCCCCCHHHHHHHHHHCHHHHHHH
Confidence 1110 01111244689999999999999 99999999764 1378766554455565556655544
Q ss_pred ChhHHH
Q 041164 267 PRAILD 272 (357)
Q Consensus 267 p~~~~~ 272 (357)
-..+..
T Consensus 439 ~~~l~~ 444 (636)
T PRK13795 439 EAFLLK 444 (636)
T ss_pred HHHHHH
Confidence 444433
No 62
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.57 E-value=6.7e-15 Score=127.72 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=96.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
+++|++||||||++||+++.++. .++.++|+|+|. ..++..++++++.+.+|+++.+......+. ....
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~------~~~~vv~~dtg~--e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~ 69 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAG------RKVPVVFIDTGY--EFPETYEFVDELAKRYGIPIIVYRPPETFE---QRFI 69 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHH------TTCEEEEEE-ST--B-HHHHHHHHHHHHHTTCEEEEEETTSHHH---HHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhc------CCCcEEEEecCc--cCHHHHHHHHHHHhhhhhhhhhcccccchh---hccc
Confidence 37899999999999999999983 345799999998 468889999999999999977776543321 1111
Q ss_pred HHhCCCCCc--hhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC
Q 041164 143 KVIGLKNNC--TFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK 220 (357)
Q Consensus 143 ~~~~~~~~c--~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~ 220 (357)
......... ..|..++..-+.++.++++...+++|..+++-.. |.. .. .... .........+.||.
T Consensus 70 ~~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~-------R~~---~~-~~~~-~~~~~~~~~~~Pi~ 137 (174)
T PF01507_consen 70 LYGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPR-------RAK---LP-MFEF-DEDNPKIIRVYPIA 137 (174)
T ss_dssp HHHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTG-------CCG---SS-SEEE-ETTTTSEEEE-TTT
T ss_pred cccccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhh-------hhh---ch-hhhc-ccccCCEEEEEehh
Confidence 111111111 2467778888999999999999999998887431 111 10 0111 11111244678999
Q ss_pred cCCHHHHHHHHHHHcCCccc
Q 041164 221 YTYEKEIMFTYAYFKRLDYF 240 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~ 240 (357)
+|+++||+. |.+.+|+|+.
T Consensus 138 ~wt~~dV~~-yi~~~~l~~~ 156 (174)
T PF01507_consen 138 DWTEEDVWD-YIKANGLPYN 156 (174)
T ss_dssp T--HHHHHH-HHHHHT--B-
T ss_pred hCCHHHHHH-HHHHhcCCCc
Confidence 999999999 9999999864
No 63
>PRK13794 hypothetical protein; Provisional
Probab=99.56 E-value=1.4e-13 Score=137.50 Aligned_cols=205 Identities=16% Similarity=0.115 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
+.+++.....|+..- -..+++++|++|||+||+++|+++.+.. +.++.++++|+|. ..++..++++++++.+
T Consensus 229 ~~~~~~a~~~i~~~~-~~~~~~v~vs~SGGKDS~v~L~L~~~~~-----~~~~~vvfiDTG~--efpet~e~i~~~~~~~ 300 (479)
T PRK13794 229 DKYERNSIGFIRNTA-EKINKPVTVAYSGGKDSLATLLLALKAL-----GINFPVLFNDTGL--EFPETLENVEDVEKHY 300 (479)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEecchHHHHHHHHHHHHHh-----CCCeEEEEEECCC--CChHHHHHHHHHHHhc
Confidence 344444444444421 1134689999999999999999998862 4568899999998 3688899999999999
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCC--CCchhHHHHHHHHHHHHHHHC--CCCEEEcCCChhHHHHHHHHHHHccCcc
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLK--NNCTFCGVFRRQALDRGASLL--KVDKIATGHNADDIAETVLLNILRGDIA 197 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~--~~c~~c~~~r~~~l~~~A~~~--g~~~I~tGh~~dD~aet~l~~l~rG~~~ 197 (357)
|++++++... .| .+.....+.+ ....-|..++..-+.++.++. +...+++|-..++-.....+ .
T Consensus 301 gl~i~~~~~~-~f----~~~~~~~G~P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~Ra~~-------~ 368 (479)
T PRK13794 301 GLEIIRTKSE-EF----WEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFNRSKK-------P 368 (479)
T ss_pred CCcEEEEchH-HH----HHHHHhcCCCCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHhHhcC-------c
Confidence 9999988654 11 1222211222 222334667777777776663 45678999988875433211 1
Q ss_pred ccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCccccc-----------CCCCCChhhHHHHHHHHHHHHHhC
Q 041164 198 RLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFST-----------ECIYSPNAYRGFAREFIKDLERLR 266 (357)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~-----------~~~~~~~~~r~~ir~~l~~Le~~~ 266 (357)
.+.. .........+.|+.+|+..||+. |+..+++|+..- .||+.....-..+++..|++-+.|
T Consensus 369 ~~~~-----~~~~~~~~~~~PI~~Wt~~dVw~-Yi~~~~lp~npLY~~G~~riGC~~Cp~~~~~e~~~i~~~~Pe~~~~w 442 (479)
T PRK13794 369 RIWR-----NPYIKKQILAAPILHWTAMHVWI-YLFREKAPYNKLYEQGFDRIGCFMCPAMELGEIELIKAEYPELWEKW 442 (479)
T ss_pred cccc-----ccCcCCcEEEechHhCCHHHHHH-HHHHcCCCCChHHHCCCCCCccccCcCcCHHHHHHHHHHCHHHHHHH
Confidence 1100 01111244689999999999999 999999998541 377765444444555555554444
Q ss_pred ChhHHH
Q 041164 267 PRAILD 272 (357)
Q Consensus 267 p~~~~~ 272 (357)
-.++..
T Consensus 443 ~~~l~~ 448 (479)
T PRK13794 443 ENFLKA 448 (479)
T ss_pred HHHHHH
Confidence 444333
No 64
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=99.55 E-value=6.2e-14 Score=126.23 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=114.6
Q ss_pred HHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEE
Q 041164 48 IHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKI 127 (357)
Q Consensus 48 v~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~i 127 (357)
++.++..+ +++++|++||||||+||||++.+. ..++.++++|+|. ..++..++++++++.+|+++.+
T Consensus 5 l~~a~~~~-----~~~~~~s~SgGKDS~Vll~L~~~~------~~~~~v~f~DTg~--efpeT~efv~~~~~~~~l~i~~ 71 (212)
T TIGR00434 5 IAWAYVTF-----GGHLVYSTSFGIQGAVLLDLVSKI------SPDIPVIFLDTGY--HFPETYELIDELTERYPLNIKV 71 (212)
T ss_pred HHHHHHhc-----CCCEEEEecCCHHHHHHHHHHHhc------CCCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEE
Confidence 44455554 246999999999999999999986 4467888999998 4688899999999999998877
Q ss_pred EeeccccCCCHHHHHHHhC----CCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccccccc
Q 041164 128 VSYKDLYGWTMDEIVKVIG----LKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCT 203 (357)
Q Consensus 128 v~~~~~~~~~i~~~~~~~~----~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~ 203 (357)
+..+. +........+ ...+...|...+..-+.++.++.+...+++|-.+||-... - .+..
T Consensus 72 ~~~~~----~~~~~~~~~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~R-------~---~~~~-- 135 (212)
T TIGR00434 72 YKPDL----SLAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPSR-------A---NLSI-- 135 (212)
T ss_pred ECCch----hHHHHHHhcCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCccc-------c---CCce--
Confidence 65431 1222222112 1234445677777888888888888888999998874211 1 1110
Q ss_pred ccccCCCCCccccccCCcCCHHHHHHHHHHHcCCccc
Q 041164 204 LITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYF 240 (357)
Q Consensus 204 ~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~ 240 (357)
+.........++.||++|+..||+. |...+|||+.
T Consensus 136 -~~~~~~~~~~~v~PI~dWt~~dVw~-Yi~~~~lp~n 170 (212)
T TIGR00434 136 -LNIDEKFGILKVLPLIDWTWKDVYQ-YIDAHNLPYN 170 (212)
T ss_pred -eeecCCCCcEEEeehhhCCHHHHHH-HHHHcCCCCC
Confidence 0001112355789999999999999 9999999974
No 65
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=99.55 E-value=2.1e-13 Score=123.61 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=113.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
++++++++|||+||+|+||++.++. +..+.+|++|+|. ..++..++++++.+.+|+++.++...... +..+
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~-----~~~i~vv~vDTg~--~fpET~e~~d~~~~~~~~~l~v~~~~~~~--~~~~ 95 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSIS-----EPMIPVIFIDTLY--HFPQTLTLKDELTKKYYQTLNLYKYDGCE--SEAD 95 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhh-----CCCCCEEEEeCCC--CCHHHHHHHHHHHHHhCCceEEEEeCCch--hHHH
Confidence 4579999999999999999999983 1468899999998 46889999999999999665555443211 1112
Q ss_pred HHHHhCC----CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCcccc
Q 041164 141 IVKVIGL----KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRC 216 (357)
Q Consensus 141 ~~~~~~~----~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~i 216 (357)
.....+. .++-..|...+..-|.++.++++.+.+++|-..++-.. |.. +. .+.....+++..+
T Consensus 96 ~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~-------Ra~---~~---~~~~d~~~~~~kv 162 (226)
T TIGR02057 96 FEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSA-------RAN---LP---VIEIDEQNGILKV 162 (226)
T ss_pred HHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCcc-------ccC---Cc---cccccCCCCeEEE
Confidence 1111111 23445678888899999999999999999998877421 111 11 1111112346678
Q ss_pred ccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 217 KPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 217 rPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
.||.+|+..||+. |...++||+..
T Consensus 163 ~Pi~~Wt~~dVw~-Yi~~~~lP~np 186 (226)
T TIGR02057 163 NPLIDWTFEQVYQ-YLDAHNVPYNP 186 (226)
T ss_pred eehhhCCHHHHHH-HHHHcCCCCCc
Confidence 9999999999999 99999999854
No 66
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.53 E-value=1.2e-13 Score=126.40 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
+.+...++..+++.+ .++++|++|||+||++++.++++... .-++.+|+++.+. .++.+.+.++.+|+.+
T Consensus 3 ~~l~~~L~~~~~~~g----~~~vVvglSGGiDSav~A~La~~Alg----~~~v~~v~mp~~~--~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKSG----AKGVVVGLSGGIDSAVVAALAVKALG----PDNVLAVIMPSGF--SSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHHT----TSEEEEEETSSHHHHHHHHHHHHHHG----GGEEEEEEEESST--STHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEcCCCCCHHHHHHHHHHHhh----hcccccccccccc--CChHHHHHHHHHHHHh
Confidence 344555666666542 36899999999999999999998731 2479999998665 3677889999999999
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccccc
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSR 201 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~ 201 (357)
|+++.++++++.+......+..........-...++|...+..+|...|.-++-||+.. |. ..|-
T Consensus 73 gi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT~N~s----E~-----~~Gy------ 137 (242)
T PF02540_consen 73 GIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNYLVLGTGNKS----EL-----LLGY------ 137 (242)
T ss_dssp TSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEBE--CHH----HH-----HHTC------
T ss_pred CCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccceEEecCCcHH----Hh-----hcCc------
Confidence 99999999986653211111110000011123456788888899998875444444422 21 1221
Q ss_pred ccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 202 CTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 202 ~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
.+...+...-+.|+.+++|.||+. .++..|+|-
T Consensus 138 ----~T~~GD~~~d~~Pi~~L~K~eV~~-la~~l~ip~ 170 (242)
T PF02540_consen 138 ----FTKYGDGAGDIAPIADLYKTEVRE-LARYLGIPE 170 (242)
T ss_dssp ----SHTTTTTSSSBETTTTS-HHHHHH-HHHHTTCGH
T ss_pred ----ccccCcccccceeeCCcCHHHHHH-HHHHHhhHH
Confidence 112222233489999999999999 999999984
No 67
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=99.52 E-value=3e-13 Score=129.42 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=118.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHH-HHhC-----CCeEEEeeccccC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNE-IQYG-----LPLKIVSYKDLYG 135 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~-~~lg-----i~~~iv~~~~~~~ 135 (357)
.++++.+|||.||-|+.|++.+. |.+++++|++.+-. .+++..+.+..++ ..+. +.++++++.+.
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~mkR------G~~v~~v~f~~~p~-~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v-- 246 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMMKR------GVEVIPVHFGNPPY-TSEKAREKVVALALLRLTSYGGKVRLYVVPFTEV-- 246 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHHhc------CCEEEEEEEcCCCC-chHHHHHHHHHHHhhhhcccCCceEEEEEchHHH--
Confidence 68999999999999999999986 99999999965321 2344445555555 3332 45566665443
Q ss_pred CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 136 WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 136 ~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
.+++.........|..|+.+.++...++|++.|+..|+||.++.++|.+++.|+.--+. .. ..++
T Consensus 247 --~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i~~-----------~t--~~pI 311 (383)
T COG0301 247 --QEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVIDS-----------VT--NTPV 311 (383)
T ss_pred --HHHHHhhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHHHHHh-----------cc--CCce
Confidence 35555544456789999999999999999999999999999999999999988765421 11 3678
Q ss_pred cccCCcCCHHHHHHHHHHHcCCc
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
+|||+.+.|.||.. +|+..|..
T Consensus 312 lRPLI~~DK~eIi~-~Ar~IgT~ 333 (383)
T COG0301 312 LRPLIGLDKEEIIE-IARRIGTY 333 (383)
T ss_pred eccccCCCHHHHHH-HHHHhCCh
Confidence 99999999999999 99999853
No 68
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=99.51 E-value=4.5e-13 Score=126.33 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=126.4
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC-eEEEeeccccCC-C
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP-LKIVSYKDLYGW-T 137 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~-~~iv~~~~~~~~-~ 137 (357)
..+||++|+|||.|.++.+-||++- +|++|+++++|.|+. .++++.+++-|.++|.. ++++|..++|-. .
T Consensus 3 ~~kkvvLAYSGGLDTSv~i~wL~e~-----~~~eVia~tadvGQ~---eed~~~i~eKA~~~Ga~~~~viD~reeF~~~y 74 (403)
T COG0137 3 KVKKVVLAYSGGLDTSVAIKWLKEK-----GGAEVIAVTADVGQP---EEDLDAIREKALELGAEEAYVIDAREEFVEDY 74 (403)
T ss_pred CCcEEEEEecCCccHHHHHHHHHHh-----cCceEEEEEEeCCCC---hHHhHHHHHHHHHhCCceEEEeecHHHHHHHH
Confidence 3579999999999999999999986 469999999999984 57789999999999975 999999887721 1
Q ss_pred HHHHHH-----HhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCC
Q 041164 138 MDEIVK-----VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGED 210 (357)
Q Consensus 138 i~~~~~-----~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~ 210 (357)
+-...+ +...+..-+..|.+.-..+.++|++.|+++|+.|.+. +||+. +.. .+ ....
T Consensus 75 i~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvR-------------Fe~--~~-~al~ 138 (403)
T COG0137 75 IFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVR-------------FEL--AI-LALN 138 (403)
T ss_pred HHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceee-------------eee--eh-hhhC
Confidence 111111 1225566777788999999999999999999999976 45531 110 00 0122
Q ss_pred CCccccccCCc--CCHHHHHHHHHHHcCCccccc-CCCCCCh
Q 041164 211 GPIPRCKPFKY--TYEKEIMFTYAYFKRLDYFST-ECIYSPN 249 (357)
Q Consensus 211 ~~i~~irPL~~--~~k~EI~~~ya~~~~i~~~~~-~~~~~~~ 249 (357)
..+.+|.|.++ +++.|... ||..+|||+-.+ ..|||.+
T Consensus 139 p~lkiiAP~Rew~~~R~~~i~-Ya~~~gipv~~~~~kpySiD 179 (403)
T COG0137 139 PDLKIIAPWREWNLTREEEIE-YAEEHGIPVKATKEKPYSID 179 (403)
T ss_pred CCcEEEeehhhhccChHHHHH-HHHHcCCCccccCCCCcccc
Confidence 34788999985 77999999 999999998766 5788764
No 69
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.50 E-value=6.6e-13 Score=117.65 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=107.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC----ChhhHHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY----RDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~----~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
|++|++||||||+++|+++.+. |+++.+++++.+.... +....+.++++|+.+|+|+++++++.. .
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~------G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~----~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE------GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGE----E 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc------CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCC----c
Confidence 5899999999999999999996 8899999988655322 223578899999999999999987431 1
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCcccccc
Q 041164 139 DEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKP 218 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irP 218 (357)
++..+ ..+..|.+++.+ |++.|++|.+.+|...+-..+++..-+ +..+.|
T Consensus 71 e~~~~-------------~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~g----------------l~~~~P 120 (194)
T cd01994 71 EDEVE-------------DLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLG----------------LEPLAP 120 (194)
T ss_pred hHHHH-------------HHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcC----------------CEEEec
Confidence 23322 445667777777 999999999999987777776665532 567899
Q ss_pred CCcCCHHHHHHHHHHHcCCcccc
Q 041164 219 FKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 219 L~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
|......++.. =.-..|+..+-
T Consensus 121 LW~~~~~~ll~-e~~~~g~~~~i 142 (194)
T cd01994 121 LWGRDQEELLR-EMIEAGFKAII 142 (194)
T ss_pred ccCCCHHHHHH-HHHHcCCeEEE
Confidence 99999999988 77788887544
No 70
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=99.50 E-value=1.6e-13 Score=131.96 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=107.0
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccC--CCHHHH
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYG--WTMDEI 141 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~--~~i~~~ 141 (357)
++|+|||.||++++.+|++. .+++|+++++|.|+. +++.+.+++-|.++|. +++++|..+.|- ...+.+
T Consensus 1 VLAySGGLDTS~~l~~L~e~-----~~~~Via~~aDlGq~---~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI 72 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEE-----GGYEVIAVTADLGQP---DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAI 72 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHT-----TTEEEEEEEEESSST----S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHH
T ss_pred CeeeCCChHHHHHHHHHHhh-----cCceEEEEEEECCCc---HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHH
Confidence 68999999999999999986 359999999999983 4678899999999997 999999988762 112222
Q ss_pred HH----HhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 142 VK----VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 142 ~~----~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
.. +...+...+..|.+.-..+.++|++.|+++|+.|.+. +|++..-+. ++- ....+.+
T Consensus 73 ~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~--~~a--------------l~P~l~v 136 (388)
T PF00764_consen 73 KANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELS--IRA--------------LAPELKV 136 (388)
T ss_dssp HTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHH--HHH--------------HSTTSEE
T ss_pred HHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHH--HHH--------------hCcCCcE
Confidence 21 1235566778899999999999999999999999976 787643211 110 0113677
Q ss_pred cccCCc--CCHHHHHHHHHHHcCCcccccC-CCCCCh
Q 041164 216 CKPFKY--TYEKEIMFTYAYFKRLDYFSTE-CIYSPN 249 (357)
Q Consensus 216 irPL~~--~~k~EI~~~ya~~~~i~~~~~~-~~~~~~ 249 (357)
+.|+++ ++++|... |++.+|||+..+. .||+.+
T Consensus 137 iaP~Rd~~~~R~~~i~-ya~~~gIpv~~~~~~~yS~D 172 (388)
T PF00764_consen 137 IAPWRDWEFSREEEIE-YAKKHGIPVPVTKKKPYSID 172 (388)
T ss_dssp E-GGGHHHHHHHHHHH-HHHHTT----SS---SSEEE
T ss_pred ecccchhhhhHHHHHH-HHHHcCCCCCCCCCCCCCcc
Confidence 889986 67999999 9999999986653 667543
No 71
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.46 E-value=9.8e-13 Score=137.20 Aligned_cols=154 Identities=16% Similarity=0.074 Sum_probs=113.8
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
+.++|+|++|||+||+++|.++.++.++.+ ...+|++|++ .+. +.++.+.+.++++|+.+|++++++++++.++..+
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~-~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~ 437 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGF-ATTDRTKNNAVALMKALGVTAREIDIRPAALQML 437 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCC-CCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHH
Confidence 378999999999999999999988754432 1378999999 554 4678889999999999999999999987764333
Q ss_pred HHHHHHhC-CCCCc-----hhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCC-CC
Q 041164 139 DEIVKVIG-LKNNC-----TFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGE-DG 211 (357)
Q Consensus 139 ~~~~~~~~-~~~~c-----~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~-~~ 211 (357)
+.+..... ..+.| ..|.++|+.+|..+|.+.|+.+|.||+ ..|..++... .. .+
T Consensus 438 ~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn----~sE~~~Gy~T---------------~~~GD 498 (679)
T PRK02628 438 KDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGD----LSELALGWCT---------------YGVGD 498 (679)
T ss_pred HHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCc----hhhHHhCcee---------------cCCCC
Confidence 33321100 12345 349999999999999999999999993 4444333222 12 11
Q ss_pred CccccccCCcCCHHHHHHHHHHHc
Q 041164 212 PIPRCKPFKYTYEKEIMFTYAYFK 235 (357)
Q Consensus 212 ~i~~irPL~~~~k~EI~~~ya~~~ 235 (357)
...-+.|+.+++|.+|+. ++++.
T Consensus 499 ~~~~~~~~~~l~Kt~v~~-l~~~~ 521 (679)
T PRK02628 499 HMSHYNVNASVPKTLIQH-LIRWV 521 (679)
T ss_pred cccccccccCCcHHHHHH-HHHHH
Confidence 233478999999999999 88877
No 72
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.46 E-value=2.7e-13 Score=125.60 Aligned_cols=155 Identities=22% Similarity=0.257 Sum_probs=113.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
.+++++|||+||+|+|+++.+. ...+.++|+|+|. ..++..+++.++++++|+++.+......+... +...
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~------~~~~~vif~DTg~--~f~Et~~~~d~~~~~~~~~l~~~~~~~~~~~~-~~~~ 111 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKA------FPDFPVIFLDTGY--HFPETYEFRDRLAEEYGLDLKVYRPDDEVAEG-EKYG 111 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHh------cCCCcEEEEeCCC--cCHHHHHHHHHHHHHcCCeEEEecCccchhhh-hhcc
Confidence 4899999999999999999997 4458999999998 46888999999999999999888765443222 1111
Q ss_pred HHhCCCCCch-hHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCC--CCccccccC
Q 041164 143 KVIGLKNNCT-FCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGED--GPIPRCKPF 219 (357)
Q Consensus 143 ~~~~~~~~c~-~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~--~~i~~irPL 219 (357)
.....++.-. .|...+-.-|.++-+..+.+.+++|-..|+.....-. ++..... +...+|.||
T Consensus 112 ~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~Rak~--------------~~~~~~~~~~~~~rv~Pl 177 (261)
T COG0175 112 GKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPTRAKL--------------PVVSFDSEFGESIRVNPL 177 (261)
T ss_pred cCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccccccccC--------------ceeccccCcCCeEEEcch
Confidence 1111222222 4667777889999999988999999998875422111 1111111 135678999
Q ss_pred CcCCHHHHHHHHHHHcCCcccc
Q 041164 220 KYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 220 ~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
.+|+..||+. |...++||+..
T Consensus 178 ~~Wt~~dVw~-Yi~~~~lp~np 198 (261)
T COG0175 178 ADWTELDVWL-YILANNLPYNP 198 (261)
T ss_pred hcCCHHHHHH-HHHHhCCCCCc
Confidence 9999999999 99999999854
No 73
>PTZ00323 NAD+ synthase; Provisional
Probab=99.41 E-value=1.3e-11 Score=115.66 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=112.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHH
Q 041164 34 QICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQT 113 (357)
Q Consensus 34 ~lC~~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~ 113 (357)
.+=-+.|++.....+++.+++. +.++++||+|||+||++++.++.+.......+ ...++.+.... ..++.+.+.
T Consensus 23 ~~~~~~~i~~~~~~L~~~l~~~----g~~~vVVglSGGVDSav~aaLa~~alg~~~~~-~~~~~~v~~P~-~ss~~~~~~ 96 (294)
T PTZ00323 23 AFNPAAWIEKKCAKLNEYMRRC----GLKGCVTSVSGGIDSAVVLALCARAMRMPNSP-IQKNVGLCQPI-HSSAWALNR 96 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc----CCCcEEEECCCCHHHHHHHHHHHHHhccccCC-ceEEEEEECCC-CCCHHHHHH
Confidence 3444566666666666666663 34689999999999999999999863221101 12333333332 235678899
Q ss_pred HHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCch-----hHHHHHH---HHHHHHHHHCCCCEEEcCC-ChhHHH
Q 041164 114 VKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT-----FCGVFRR---QALDRGASLLKVDKIATGH-NADDIA 184 (357)
Q Consensus 114 v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~-----~c~~~r~---~~l~~~A~~~g~~~I~tGh-~~dD~a 184 (357)
++.+|+.+|++++++++++.+......+....+.. .-. .=.++|. +.+...+.+.|...|+.|. |.+|..
T Consensus 97 A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~-~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~ 175 (294)
T PTZ00323 97 GRENIQACGATEVTVDQTEIHTQLSSLVEKAVGIK-GGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDG 175 (294)
T ss_pred HHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhccc-chhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhh
Confidence 99999999999999999876521111111000000 000 0011222 2334445577889999999 999852
Q ss_pred HHHHHHHHccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 185 ETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 185 et~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
.. |- .+...+++.-+.|+..++|.||+. +++..|+|
T Consensus 176 ~~-------Gy----------~t~~GDg~~d~~pia~L~K~eVr~-LAr~l~lp 211 (294)
T PTZ00323 176 YL-------GY----------FCKAGDGVVDVQLISDLHKSEVFL-VARELGVP 211 (294)
T ss_pred Hh-------ch----------HhhcCCCCcCchhhcCCcHHHHHH-HHHHcCCC
Confidence 11 21 111122344588999999999999 99999999
No 74
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=99.37 E-value=8.7e-12 Score=112.59 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=98.5
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEE-EEEecCCC--C-CCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLF-LLSIDEGI--S-GYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~-av~id~g~--~-~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
++++|||+||+++|+++++. |++++ +++++... + .++..+.+.++.+|+.+|+|+++++++... +.
T Consensus 1 ~vl~SGGkDS~~al~~a~~~------G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~----~~ 70 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEE------GHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK----EK 70 (218)
T ss_pred CeeecCcHHHHHHHHHHHHc------CCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC----hH
Confidence 47999999999999999996 88886 55665321 1 123345788999999999999999876211 11
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK 220 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~ 220 (357)
... -.+.++.+++.+ |++.|++|.+.+|.......+++.. .++..+.||.
T Consensus 71 ~~~-------------~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~----------------~gl~~~~PLw 120 (218)
T TIGR03679 71 EVE-------------DLKGALKELKRE-GVEGIVTGAIASRYQKSRIERICEE----------------LGLKVFAPLW 120 (218)
T ss_pred HHH-------------HHHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHh----------------CCCeEEeehh
Confidence 111 133445555555 9999999999998765555554422 1377899999
Q ss_pred cCCHHHHHHHHHHHcCCcccc
Q 041164 221 YTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~ 241 (357)
.+++.|+.. -+...|+...-
T Consensus 121 ~~~~~el~~-~~~~~G~~~~i 140 (218)
T TIGR03679 121 GRDQEEYLR-ELVERGFRFII 140 (218)
T ss_pred cCCHHHHHH-HHHHCCCEEEE
Confidence 999999999 99999987644
No 75
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.35 E-value=4.3e-11 Score=113.63 Aligned_cols=170 Identities=18% Similarity=0.124 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecCCCCCCChhhHHHHHHH
Q 041164 39 CFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDEGISGYRDDSLQTVKRN 117 (357)
Q Consensus 39 cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~g~~~~~~~~~~~v~~~ 117 (357)
...+.+...++..+++. + ..++|+|++|||+||+++++++.+.. + .++.+++++.+.. +.++.+.++.+
T Consensus 14 ~~~e~i~~~l~~~V~~~-~--~~~~VvVgLSGGIDSSvvaaLa~~a~-----g~~~v~av~~~~~~s--~~~e~~~A~~l 83 (326)
T PRK00876 14 AEAERIRAAIREQVRGT-L--RRRGVVLGLSGGIDSSVTAALCVRAL-----GKERVYGLLMPERDS--SPESLRLGREV 83 (326)
T ss_pred HHHHHHHHHHHHHHHHH-c--CCCCEEEEccCCHHHHHHHHHHHHhh-----CCCcEEEEEecCCCC--ChHHHHHHHHH
Confidence 34455666666666552 1 23489999999999999999998752 3 4789999987642 46678899999
Q ss_pred HHHhCCCeEEEeeccccCC-------------CHHHHHH------------HhCC----------CC-------------
Q 041164 118 EIQYGLPLKIVSYKDLYGW-------------TMDEIVK------------VIGL----------KN------------- 149 (357)
Q Consensus 118 ~~~lgi~~~iv~~~~~~~~-------------~i~~~~~------------~~~~----------~~------------- 149 (357)
|+.+|++++++++...+.. .++.+.. .... ..
T Consensus 84 A~~LGi~~~~i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (326)
T PRK00876 84 AEHLGVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDGLNVFSLVVQDPDGEVTRKRLPANAY 163 (326)
T ss_pred HHHcCCCEEEEECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccccccccccccccCccccccccccccchh
Confidence 9999999999998764311 0111100 0000 00
Q ss_pred --C---chhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCCcCCH
Q 041164 150 --N---CTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYE 224 (357)
Q Consensus 150 --~---c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k 224 (357)
. --...++|...|..+|...|+-++-||+-.... .| +.+...+...-+.||.+++|
T Consensus 164 ~~~~~~~N~~aR~Rm~~ly~~A~~~~~lVlgT~NksE~~---------~G----------y~TkyGD~~~d~~Pi~~L~K 224 (326)
T PRK00876 164 LQIVAATNFKQRTRKMVEYYHADRLNYAVAGTPNRLEYD---------QG----------FFVKNGDGAADLKPIAHLYK 224 (326)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCchhhHh---------hC----------CeeeecCccccchhccCCCH
Confidence 0 012246788889999999987666666533321 12 12222223445899999999
Q ss_pred HHHHHHHHHHcCCc
Q 041164 225 KEIMFTYAYFKRLD 238 (357)
Q Consensus 225 ~EI~~~ya~~~~i~ 238 (357)
.||+. .|+..|+|
T Consensus 225 t~V~~-La~~l~vP 237 (326)
T PRK00876 225 TQVYA-LAEHLGVP 237 (326)
T ss_pred HHHHH-HHHHhCCC
Confidence 99999 99999998
No 76
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=99.35 E-value=2.5e-12 Score=103.05 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=81.8
Q ss_pred HHHHHHHHHHccCccccccccccccCC-CCCccccccCCcCCHHHHHHHHHHHcCCcccccC---------CCCCChhhH
Q 041164 183 IAETVLLNILRGDIARLSRCTLITTGE-DGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTE---------CIYSPNAYR 252 (357)
Q Consensus 183 ~aet~l~~l~rG~~~~l~~~~~~~~~~-~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~---------~~~~~~~~r 252 (357)
+|..+|.++++|+|..+++.....+.. .+++.++|||+++..+||.. |++..+++....+ -.....++.
T Consensus 1 LA~~~Ls~~~kGRG~sl~~~~~~~~~~~~~~i~~~rPLRd~l~kEi~~-Y~~~~~l~~~~~~~~~~~~~~~~~~~~~SI~ 79 (107)
T PF10288_consen 1 LAIKTLSNVAKGRGFSLPWQVSDGDSRNGWDIKIIRPLRDLLKKEIAF-YNRLCGLESVLVPSLDTDSSQSKSSKNMSIN 79 (107)
T ss_pred CHHHHHHHHHcCCceecchHHhCCcccCCCCceEEeehHhCCHHHHHH-HHHHhCcchhhcccccccccccccCcCCCHH
Confidence 367889999999999999888887766 45699999999999999999 9999999733222 112335889
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHhhhhc
Q 041164 253 GFAREFIKDLERLRPRAILDIIKSGENF 280 (357)
Q Consensus 253 ~~ir~~l~~Le~~~p~~~~~i~~t~~~l 280 (357)
..+++|+..||+.||+++.||+||++||
T Consensus 80 ~L~~~fi~~Le~~ypstvsTV~RT~~KL 107 (107)
T PF10288_consen 80 ELTEDFIDNLEENYPSTVSTVVRTADKL 107 (107)
T ss_pred HHHHHHHHHHhCcCcchHhHHHHHhhcC
Confidence 9999999999999999999999999886
No 77
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3e-11 Score=100.62 Aligned_cols=177 Identities=23% Similarity=0.277 Sum_probs=115.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc-CCCHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEI 141 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~-~~~i~~~ 141 (357)
+|.|.|||||||+..+.+|.++ ||++.+|+|+.|+- ++.+.+++-|+.+|+||.++.++... ....+.+
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl------gyev~LVTvnFGv~----d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~ 71 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL------GYEVELVTVNFGVL----DSWKYARETAAILGFPHEVLQLDREILEDAVEMI 71 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh------CCCcEEEEEEeccc----cchhhHHHHHHHhCCCcceeccCHHHHHHHHHHH
Confidence 4789999999999999999998 99999999999984 34678899999999999999986432 1111222
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCCc
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKY 221 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~ 221 (357)
.. .+.|.+ .-..+...++..+|.. .++.|+-|...||-+-++-..-.+ .+ ...-++..|+||..
T Consensus 72 ie-dg~P~~--aIq~iH~~alE~~A~r-~~~~iaDGTRRDDrvP~ls~~~~q----------SL--EdR~nv~Yi~PL~G 135 (198)
T COG2117 72 IE-DGYPRN--AIQYIHEMALEALASR-EVDRIADGTRRDDRVPKLSRSEAQ----------SL--EDRLNVQYIRPLLG 135 (198)
T ss_pred Hh-cCCCch--HHHHHHHHHHHHHHHH-HHHHHcCCCcccccCccccHHHHh----------hH--HHhcCceeeccccc
Confidence 22 233322 2234556777777776 778999999999965332111111 11 11225788999999
Q ss_pred CCHHHHHHHHHHH-cCCcccccCCCCCChhhHHHHHHHHHH----HHHhCC
Q 041164 222 TYEKEIMFTYAYF-KRLDYFSTECIYSPNAYRGFAREFIKD----LERLRP 267 (357)
Q Consensus 222 ~~k~EI~~~ya~~-~~i~~~~~~~~~~~~~~r~~ir~~l~~----Le~~~p 267 (357)
+..+-|.. .+.. ..+.-...+.- ....+...+|.+|.+ .++.||
T Consensus 136 ~G~kti~~-Lv~~~f~~e~~~Se~~-~k~DYEaElR~lL~erg~~~~~~FP 184 (198)
T COG2117 136 LGYKTIRR-LVSAIFILEEGPSEKI-EKADYEAELRYLLRERGTAPEDIFP 184 (198)
T ss_pred ccHHHHHH-HHHHHeeeeccccccc-cccchHHHHHHHHHHcCCChHHhcc
Confidence 99999998 6553 33332222211 122445566666654 334555
No 78
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.21 E-value=2.6e-10 Score=105.15 Aligned_cols=170 Identities=12% Similarity=0.000 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCC-----CCeeEEEEEecCCCCCCChhhHHHH
Q 041164 40 FYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHN-----YGLDLFLLSIDEGISGYRDDSLQTV 114 (357)
Q Consensus 40 f~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~-----~g~~v~av~id~g~~~~~~~~~~~v 114 (357)
..+.+...++..+++. +...++|++|||+||++.+.++.+.....+ ....+.++..-.. +..+.+.+
T Consensus 21 ~~~~i~~~L~~~l~~~----g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~----~~~~~~da 92 (268)
T PRK00768 21 EIRRRVDFLKDYLKKS----GLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYG----VQADEDDA 92 (268)
T ss_pred HHHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCC----CcCCHHHH
Confidence 3444455555555543 356899999999999999998887643211 1234566555432 23456788
Q ss_pred HHHHHHhCC-CeEEEeeccccCCCHHHHHHHhCC-CC---CchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHH
Q 041164 115 KRNEIQYGL-PLKIVSYKDLYGWTMDEIVKVIGL-KN---NCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLL 189 (357)
Q Consensus 115 ~~~~~~lgi-~~~iv~~~~~~~~~i~~~~~~~~~-~~---~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~ 189 (357)
+.+++.+|+ ++.++++...+....+.+.. .+. .. .--.-.++|..+|..+|...|.-++-||+-.+..
T Consensus 93 ~~la~~lgi~~~~~i~I~~~~~~~~~~l~~-~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~sE~~------ 165 (268)
T PRK00768 93 QDALAFIQPDRVLTVNIKPAVDASVAALEA-AGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHAAEAV------ 165 (268)
T ss_pred HHHHHhcCCCeeEEEECHHHHHHHHHHHhh-cCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcccHHH------
Confidence 999999999 79999987654321111111 000 00 0112246788889999999887666666533321
Q ss_pred HHHccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 190 NILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 190 ~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
.| +.+...+...-+.|+.+++|.||+. .++..|+|
T Consensus 166 ---~G----------y~TkyGD~~~d~~pi~~L~KteV~~-La~~l~vP 200 (268)
T PRK00768 166 ---TG----------FFTKFGDGGADILPLFGLNKRQGRA-LLAALGAP 200 (268)
T ss_pred ---hC----------ceeccCCccccchhhcCCcHHHHHH-HHHHhCCC
Confidence 12 1122222234589999999999999 99999998
No 79
>PRK13981 NAD synthetase; Provisional
Probab=99.19 E-value=2.8e-10 Score=116.28 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecCCCCCCChhhHHHHHHH
Q 041164 39 CFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDEGISGYRDDSLQTVKRN 117 (357)
Q Consensus 39 cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~g~~~~~~~~~~~v~~~ 117 (357)
.+++.+...++..+++. ..++++|++|||+||++++.++.+.. | -+++++++.... .++.+.+.++++
T Consensus 262 ~~~~~l~~~l~~~~~~~----~~~~~vvglSGGiDSa~~a~la~~a~-----g~~~v~~~~~p~~~--~~~~~~~~a~~~ 330 (540)
T PRK13981 262 EDYRALVLGLRDYVRKN----GFPGVVLGLSGGIDSALVAAIAVDAL-----GAERVRAVMMPSRY--TSEESLDDAAAL 330 (540)
T ss_pred HHHHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHHHh-----CcCcEEEEECCCCC--CCHHHHHHHHHH
Confidence 34444455555555543 34689999999999999999998762 4 368888886443 245668899999
Q ss_pred HHHhCCCeEEEeeccccCCCHHHHHHHh-CCCCCchhH---HHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHc
Q 041164 118 EIQYGLPLKIVSYKDLYGWTMDEIVKVI-GLKNNCTFC---GVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILR 193 (357)
Q Consensus 118 ~~~lgi~~~iv~~~~~~~~~i~~~~~~~-~~~~~c~~c---~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~r 193 (357)
|+.+|++++++++...+....+.+.... +....-..+ .++|..+|..+|...|.-++.|||-.+.. .
T Consensus 331 a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~~---------~ 401 (540)
T PRK13981 331 AKNLGVRYDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEMA---------V 401 (540)
T ss_pred HHHcCCeEEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHHH---------c
Confidence 9999999999999876532222111100 111111112 46788889999999999888888755432 2
Q ss_pred cCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcC
Q 041164 194 GDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKR 236 (357)
Q Consensus 194 G~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~ 236 (357)
| +.+...+...-+.|+.+++|.+|+. .|+..+
T Consensus 402 G----------y~t~~GD~~~~~~pi~~l~K~~v~~-la~~~~ 433 (540)
T PRK13981 402 G----------YATLYGDMAGGFAPIKDVYKTLVYR-LCRWRN 433 (540)
T ss_pred C----------CeEecCCcccCccccCCCCHHHHHH-HHHHHH
Confidence 2 1112222233589999999999999 999987
No 80
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=99.13 E-value=1.9e-10 Score=88.27 Aligned_cols=68 Identities=35% Similarity=0.371 Sum_probs=59.6
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHH
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK 143 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~ 143 (357)
|+|++|||+||+++++++.+... .+.++.++|+|
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~---~~~~~~~~~~~------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKS---GGPEVVALVVV------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHh---cCCCEEEEEeH-------------------------------------------
Confidence 58999999999999999998642 26688899887
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHH
Q 041164 144 VIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 190 (357)
Q Consensus 144 ~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~ 190 (357)
.+++.+.++|++.|++.|++|||++|.+++.+++
T Consensus 35 -------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~ 68 (86)
T cd01984 35 -------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGA 68 (86)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCc
Confidence 5677889999999999999999999999988765
No 81
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.12 E-value=2.1e-09 Score=105.92 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=103.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCC---CeeEEEEEecCCCCCCChhh-------HHHHHHHHHHhCCCeEEEee
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNY---GLDLFLLSIDEGISGYRDDS-------LQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~---g~~v~av~id~g~~~~~~~~-------~~~v~~~~~~lgi~~~iv~~ 130 (357)
+...+|+|||||||+++|+++.++....+. .-.+++++.|+|. +.++. .+.++..++++|+|+.+.-+
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgv--E~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLV--ENPIVAAWVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCC--ccHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Confidence 456899999999999999999876433211 1257888889997 34443 34456678888999876554
Q ss_pred ccccCCCH-HHHHHHhCCCCC---chhHH-HHHHHH----HHHHHHHCCCCEEEcCCChhHHHHHHHH-HHHccCccccc
Q 041164 131 KDLYGWTM-DEIVKVIGLKNN---CTFCG-VFRRQA----LDRGASLLKVDKIATGHNADDIAETVLL-NILRGDIARLS 200 (357)
Q Consensus 131 ~~~~~~~i-~~~~~~~~~~~~---c~~c~-~~r~~~----l~~~A~~~g~~~I~tGh~~dD~aet~l~-~l~rG~~~~l~ 200 (357)
......+. ..+. ..+.+.| -.+|. .++..- +..+.++.|...+++|...+.-+...-. ....+...+ .
T Consensus 91 ~P~~~~~Fwv~li-GrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA~~m~k~e~~~~r-~ 168 (447)
T TIGR03183 91 TPEIKDTFWVNLI-GKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARAAVMEKHESGSLR-D 168 (447)
T ss_pred CCCcchHHHHHHh-cCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHHhhhhhhcccccc-c
Confidence 33211110 1111 1122222 34554 455444 4455556788899999998876654332 111111100 0
Q ss_pred cccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCccc
Q 041164 201 RCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYF 240 (357)
Q Consensus 201 ~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~ 240 (357)
+... .....+...+.|+.+|+..|||. |....++||-
T Consensus 169 ~l~~--~~~~~~~~v~~PI~dWs~~DVW~-yL~~~~~P~g 205 (447)
T TIGR03183 169 RLSR--NSSLPNSWVYSPIEDWSNDDVWM-YLLQVPNPWG 205 (447)
T ss_pred cccc--cCCCCCcEEEEChHhCCHHHHHH-HHHhcCCCCC
Confidence 0000 01112355799999999999999 9999988763
No 82
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=99.10 E-value=2.7e-09 Score=93.00 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=106.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
-++.||+|||.||++.+-+|+.+ + +++|.|.--..++-.+.+.+++..+|+.+..+..+ ++++
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~------g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveed------l~~i 123 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWA------G-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEED------LEDI 123 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhh------c-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHH------HHHH
Confidence 58999999999999999999987 5 56676654445666677888999999877665332 2233
Q ss_pred HHH--hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccc--
Q 041164 142 VKV--IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCK-- 217 (357)
Q Consensus 142 ~~~--~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ir-- 217 (357)
... ++...||.-|..+..+.....|++.+++.|++|+-+. .|.+. + ...+++-++.
T Consensus 124 ~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDlLs-----------~G~~s-------v--y~eD~i~rlnlP 183 (255)
T COG1365 124 EKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDLLS-----------TGYGS-------V--YREDGIFRLNLP 183 (255)
T ss_pred HhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccccc-----------ccccc-------e--eccCCEEEEccH
Confidence 321 3577899999999999999999999999999997443 23221 1 1222333333
Q ss_pred cCCcCCHHHHHHHHHHHcCCcccc-cCCCC
Q 041164 218 PFKYTYEKEIMFTYAYFKRLDYFS-TECIY 246 (357)
Q Consensus 218 PL~~~~k~EI~~~ya~~~~i~~~~-~~~~~ 246 (357)
-+..++|.|++. .+.++++...- -.||.
T Consensus 184 AflAltK~Elr~-il~~~~~e~~~kygCPl 212 (255)
T COG1365 184 AFLALTKDELRS-ILKWNGYELEMKYGCPL 212 (255)
T ss_pred HHHhhCcHHHHH-HHHhcCccchhccCCch
Confidence 356799999999 99999986522 34885
No 83
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=99.09 E-value=5.2e-10 Score=103.98 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=88.8
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc-CC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GW 136 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~-~~ 136 (357)
+..+.+|.+++|||+||+++++++.+.. +..+.+++++.+..+ .++.+.++.+|+.+|+++++++++... ..
T Consensus 12 ~~~~~~v~~~LSGGlDSs~va~~~~~~~-----~~~~~~~~~~~~~~~--~~e~~~a~~~a~~l~~~~~~~~~~~~~~~~ 84 (269)
T cd01991 12 LRSDVPVGVLLSGGLDSSLVAALAARLL-----PEPVKTFSIGFGFEG--SDEREYARRVAEHLGTEHHEVEFTPADLLA 84 (269)
T ss_pred hccCCceEEeecccHHHHHHHHHHHHhh-----CCCCceEEEeeCCCC--CChHHHHHHHHHHhCCcceEEEcCHHHHHH
Confidence 4567799999999999999999998862 223667777776543 334788999999999999999875321 00
Q ss_pred CHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 137 TMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 137 ~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
.+..... ....|+..+..+....+.+.|.+.|+.++++|+.+|++.
T Consensus 85 ~~~~~~~--~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 85 ALPDVIW--ELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred HHHHHHH--HhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccccc
Confidence 1111111 234677888888889999999999999999999999863
No 84
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.07 E-value=2.5e-09 Score=98.58 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=103.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
.+.++|++|||.||++.+.++.+...+......+.++...++.- .+.+.+.+..+++.+|+.+.++++.+........
T Consensus 25 ~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~--~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~ 102 (268)
T COG0171 25 FKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYT--VQADEEDAQDLAEALGIDYKEINIKPAVDAFLKK 102 (268)
T ss_pred CCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCc--cccCHHHHHHHHHHhCCceEEEecHHHHHHHHHh
Confidence 35799999999999999999998743210123488888877630 3566788999999999999898887543110011
Q ss_pred HHHHhCC-----CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 141 IVKVIGL-----KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 141 ~~~~~~~-----~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
+...... ..---.-.+.|..++..+|.+.|.-+|=|||-..- +.| +.+...+...-
T Consensus 103 ~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn~sE~---------~~G----------y~TkyGDg~~d 163 (268)
T COG0171 103 LLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGNKSEL---------ALG----------YFTKYGDGAVD 163 (268)
T ss_pred hhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCcHHHH---------hcC----------ceecccCcccC
Confidence 0000000 00011224588889999999988877777764332 122 11222222345
Q ss_pred cccCCcCCHHHHHHHHHHHcCCc
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
+.|+.+++|.+|.. .++..|+|
T Consensus 164 ~~Pi~~L~KtqV~~-La~~l~ip 185 (268)
T COG0171 164 INPIADLYKTQVYA-LARHLGIP 185 (268)
T ss_pred hhhhcCCcHHHHHH-HHHHcCCC
Confidence 89999999999999 99999997
No 85
>PRK06850 hypothetical protein; Provisional
Probab=99.06 E-value=1e-08 Score=102.25 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=102.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCC---CeeEEEEEecCCCCCCChhh-------HHHHHHHHHHhCCCeEEEee
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNY---GLDLFLLSIDEGISGYRDDS-------LQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~---g~~v~av~id~g~~~~~~~~-------~~~v~~~~~~lgi~~~iv~~ 130 (357)
+..++|+|||||||+++|+++.+.....+. .-.+++++.|+|. +.++. .+.++..+++.|+|+.+.-+
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgv--E~Pe~~~~v~~~l~~i~~~a~~~glpi~~~~v 111 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLV--ENPVVVDWVNKSLERINEAAKKQGLPITPHKL 111 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCC--ccHHHHHHHHHHHHHHHHHHHHcCCceEEEee
Confidence 456899999999999999999876432210 1258899999997 34443 34556667889999876554
Q ss_pred ccccCCCH-HHHHHHhCCC---CCchhHH-HHHHHHHH----HHHHHCCCCEEEcCCChhHHHHHHHHHHHcc-Cccccc
Q 041164 131 KDLYGWTM-DEIVKVIGLK---NNCTFCG-VFRRQALD----RGASLLKVDKIATGHNADDIAETVLLNILRG-DIARLS 200 (357)
Q Consensus 131 ~~~~~~~i-~~~~~~~~~~---~~c~~c~-~~r~~~l~----~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG-~~~~l~ 200 (357)
......+. ..+.. .+.+ ..-.+|. .++..-+. ++.++.|-..+++|-..+.-+...-.--.++ ++..+.
T Consensus 112 ~P~~~~sFwv~liG-rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~~RA~~m~~~~~~~~rl~ 190 (507)
T PRK06850 112 TPKINDTFWVNLIG-KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESAARAQVMAKHEIEGSRLS 190 (507)
T ss_pred CCCcchhHHHHHhc-CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccHHHHhhhhhhcccCccee
Confidence 32211110 11111 1232 2344664 45554443 4444567788999999887655432211111 111111
Q ss_pred cccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 201 RCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 201 ~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
.- +.. .+...+.|+.+|+..|||. |....++||
T Consensus 191 ~~----~~~-~~~~v~~PI~dWs~dDVW~-YL~~~~~P~ 223 (507)
T PRK06850 191 RH----TTL-PNAFVYTPIEDWSNDDVWK-YLLQWENPW 223 (507)
T ss_pred ec----cCC-CCcEEEeChHhCCHHHHHH-HHHhcCCCC
Confidence 10 011 1244689999999999999 999988887
No 86
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=99.03 E-value=2.7e-09 Score=97.77 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL 123 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi 123 (357)
+.+.+.+++++. +..+.+|.+.+|||.||++++.++.+. .+..+.+++++.+.. ...+...++++++.+|+
T Consensus 2 ~r~~l~~av~~r--l~~~~~i~~~LSGGlDSs~i~~~~~~~-----~~~~~~~~t~~~~~~--~~~e~~~a~~va~~~~~ 72 (255)
T PF00733_consen 2 LRELLEEAVARR--LRSDKPIGILLSGGLDSSAIAALAARQ-----GGPPIKTFTIGFEDD--DYDEREYARKVARHLGL 72 (255)
T ss_dssp HHHHHHHHHHHH--CGCTSEEEEE--SSHHHHHHHHHHHHT-----CCSEEEEEEEECSSC--C--HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHH--HhcCCCEEEECCCChhHHHHHHHHHHh-----hCCceeEEEEEcCCC--cchhHHHHHHHhccccc
Confidence 344555556553 446789999999999999999999993 267888888876653 22368899999999999
Q ss_pred CeEEEeeccccC-CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 124 PLKIVSYKDLYG-WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 124 ~~~iv~~~~~~~-~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
+++++.++...- ..++........+..+..+..+-...+.+.|.+.|.+.+++|+-+|++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 73 EHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHH
T ss_pred ccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEecccccccc
Confidence 999988764321 1123333322233322355666667778888899999999999999753
No 87
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=99.01 E-value=2.9e-09 Score=94.22 Aligned_cols=144 Identities=20% Similarity=0.293 Sum_probs=100.7
Q ss_pred ChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCC--
Q 041164 71 GKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLK-- 148 (357)
Q Consensus 71 G~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~-- 148 (357)
|.||+||||++.+. ..++.++++|+|. ..++..+++.++++.+|++++++..... ...+.....+.+
T Consensus 2 ~~~s~Vll~L~~~~------~~~~~vifvDTg~--~FpET~~~~d~~~~~~~l~i~~~~~~~~---~~~~~~~~~G~~~~ 70 (191)
T TIGR02055 2 GAEDVVLVDLAAKV------RPDVKVFFLDTGR--LFKETYETIDQVRERYDILIDVLSPPPL---TVEEQVKEYGLNLF 70 (191)
T ss_pred ChHHHHHHHHHHhc------CCCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEEcCCcc---cHHHHHHHcCcccc
Confidence 89999999999997 4467899999998 4688899999999999999988854211 122222222221
Q ss_pred --C-CchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCCcCCHH
Q 041164 149 --N-NCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEK 225 (357)
Q Consensus 149 --~-~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~ 225 (357)
. +-..|...+..-|.++.+. .+.+++|-..++-.....+ ..+. . +... .+..++||.+|+..
T Consensus 71 ~~~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~~R~~~-------~~~~---~--~~~~-~~~~~~Pi~~Wt~~ 135 (191)
T TIGR02055 71 YRSVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSPTRAQA-------PFLE---I--DEAF-GLVKINPLADWTSE 135 (191)
T ss_pred cccchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCchhcCC-------ceee---e--cCCC-CeEEEEecccCCHH
Confidence 1 3445777777888877664 5788999988875432111 0010 0 1111 24468999999999
Q ss_pred HHHHHHHHHcCCcccc
Q 041164 226 EIMFTYAYFKRLDYFS 241 (357)
Q Consensus 226 EI~~~ya~~~~i~~~~ 241 (357)
||+. |...+|||+..
T Consensus 136 dVw~-Yi~~~~lp~np 150 (191)
T TIGR02055 136 DVWE-YIADNELPYNP 150 (191)
T ss_pred HHHH-HHHHcCCCCCh
Confidence 9999 99999999754
No 88
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.00 E-value=3.7e-09 Score=106.23 Aligned_cols=134 Identities=18% Similarity=0.148 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQ 120 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~ 120 (357)
.+.+.+.+.+++++. +..+.+|.+.+|||.||++++.++.+.... ..+.+++++.+... ..++...++++|+.
T Consensus 235 ~e~l~~~l~~aV~~r--~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~----~~~~~~t~~~~~~~-~~~E~~~A~~vA~~ 307 (467)
T TIGR01536 235 VDELRSLLEDAVKRR--LVADVPVGVLLSGGLDSSLVAAIARREAPR----GPVHTFSIGFEGSP-DFDESPYARKVADH 307 (467)
T ss_pred HHHHHHHHHHHHHHH--hccCCceEEEecCChhHHHHHHHHHHhcCC----CCceEEEEecCCCC-CCChHHHHHHHHHH
Confidence 345666666666653 345678999999999999999999876211 25677777765211 12346789999999
Q ss_pred hCCCeEEEeeccccC-CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 121 YGLPLKIVSYKDLYG-WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 121 lgi~~~iv~~~~~~~-~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
+|++++++.+.+... ..++++... ...|+..++.+...++.+.|++.|++++++|+.+|++
T Consensus 308 lg~~~~~i~~~~~~~~~~~~~~v~~--~~~p~~~~~~~~~~~l~~~a~~~G~~vlltG~GaDEl 369 (467)
T TIGR01536 308 LGTEHHEVLFSVEEGLDALPEVIYH--LEDPTTIRASIPLYLLSKLAREDGVKVVLSGEGADEL 369 (467)
T ss_pred hCCcCeEEECCHHHHHHHHHHHHHh--hCCCCCCchHHHHHHHHHHHHhcCCEEEEecCcchhc
Confidence 999999998864321 123333322 2367888888888889999999999999999999985
No 89
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.00 E-value=8.1e-09 Score=102.33 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=106.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
++++++++|||.|| +|+|++.+. +..+.++++|+|. ..++..+++.++.++||++++++.-+. ...++
T Consensus 115 ~~~iavasSG~eds-vLlhl~~~~------~~~ipV~flDTG~--lFpETy~~~d~v~~~ygl~l~~~~p~~---~~~~~ 182 (463)
T TIGR00424 115 GNDIAIAFSGAEDV-ALIEYAHLT------GRPFRVFSLDTGR--LNPETYRFFDAVEKQYGIRIEYMFPDA---VEVQA 182 (463)
T ss_pred CCCEEEEeccHHHH-HHHHHHHHh------CCCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCCc---chHHH
Confidence 35799999988886 578998887 5568899999998 468999999999999999998763221 11222
Q ss_pred HHHHhCC-----CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccc--cCCCCCc
Q 041164 141 IVKVIGL-----KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLIT--TGEDGPI 213 (357)
Q Consensus 141 ~~~~~~~-----~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~--~~~~~~i 213 (357)
.....+. ..+-..|+..+..-|.+.... .+..+||-..++-..+ |...+.+.....+. ....+.+
T Consensus 183 ~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~--~~awitG~Rr~Qs~~t------Ra~~~~ve~d~~~~~~~~~~~~~ 254 (463)
T TIGR00424 183 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LKAWITGQRKDQSPGT------RSEIPVVQVDPVFEGLDGGVGSL 254 (463)
T ss_pred HHHhcCcccCCcCChHHHhhHHhHHHHHHHHHh--CCcEEeeeccccCccc------cccCCcccccccccccccCCCce
Confidence 2222121 133456777777888877764 5679999888763200 11111111000000 0011225
Q ss_pred cccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 214 PRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 214 ~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
..+.||.+|+..||+. |.+.++||+..
T Consensus 255 iKvnPLa~Wt~~dVw~-Yi~~~~LP~np 281 (463)
T TIGR00424 255 VKWNPVANVEGKDVWN-FLRTMDVPVNT 281 (463)
T ss_pred EEEeecccCCHHHHHH-HHHHcCCCCCc
Confidence 6789999999999999 99999999854
No 90
>PLN02309 5'-adenylylsulfate reductase
Probab=99.00 E-value=1e-08 Score=101.58 Aligned_cols=159 Identities=20% Similarity=0.287 Sum_probs=105.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
++++++++|||.|| +|+|++.+. +..+.++++|+|. ..++..+++.++.++||++++++.-+. ...++
T Consensus 110 ~~~ia~~~SG~ed~-vll~l~~~~------~~~ipV~flDTG~--lfpETy~~~d~v~~~ygl~i~~~~P~~---~~~~~ 177 (457)
T PLN02309 110 GNDIAIAFSGAEDV-ALIEYAHLT------GRPFRVFSLDTGR--LNPETYRLFDAVEKHYGIRIEYMFPDA---VEVQA 177 (457)
T ss_pred CCCEEEEecchHHH-HHHHHHHHh------CCCCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCCc---chHHH
Confidence 35799999977776 677888876 5567899999998 468999999999999999998873221 11223
Q ss_pred HHHHhCC-----CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCC---CCC
Q 041164 141 IVKVIGL-----KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGE---DGP 212 (357)
Q Consensus 141 ~~~~~~~-----~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~---~~~ 212 (357)
+.+..+. ..+-..|...+..-|.+.... .+..+||-..++-..+ |...+.+.....+ ... .+.
T Consensus 178 ~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~--~~awitG~Rr~Qs~~~------Ra~l~~ve~d~~~-~~~~~~~~~ 248 (457)
T PLN02309 178 LVRNKGLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGT------RAEVPVVQVDPVF-EGLDGGPGS 248 (457)
T ss_pred HHHhcCccccccCChHHhhhhHhHHHHHHHHhh--CCEEEEeeccccCccc------cccCCeeeecccc-cccccCCCC
Confidence 2222221 123345666677777777764 5789999988763200 1211111111000 001 123
Q ss_pred ccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 213 IPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 213 i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
+..+.||.+|+..||+. |.+.++||+..
T Consensus 249 ~lKvnPl~~Wt~~dVw~-Yi~~~~lP~np 276 (457)
T PLN02309 249 LVKWNPLANVTGNEVWN-FLRTMDVPVNS 276 (457)
T ss_pred eeEEcccccCCHHHHHH-HHHHcCCCCCc
Confidence 55799999999999999 99999999854
No 91
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.98 E-value=5.2e-09 Score=95.76 Aligned_cols=162 Identities=12% Similarity=0.162 Sum_probs=109.7
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccC--C
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYG--W 136 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~--~ 136 (357)
...+|++|+|||.|.++.|.||++. |++|++..-|-|+ .++.+.+++-|-+.|. .+.+.|+.++|- .
T Consensus 4 ~~~~vVLAySGgLDTscil~WLkeq------GyeViay~AnvGQ----~edfe~ar~kAlk~Gakk~~~ed~~~eFvedf 73 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWLKEQ------GYEVIAYLANVGQ----KEDFEEARKKALKSGAKKVVVEDVREEFVEDF 73 (412)
T ss_pred CCceEEEEecCCcCchhhhHHHHhc------CceEEEeeccccc----hhhHHHHHHhhhhcCceEEEehhhhHHHHhhc
Confidence 3467999999999999999999997 9999999999997 5668888999999996 466667776651 1
Q ss_pred CHHHHHHH----hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCC
Q 041164 137 TMDEIVKV----IGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGED 210 (357)
Q Consensus 137 ~i~~~~~~----~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~ 210 (357)
....+... ....---+..|....+....+|++.||.+|..|.+. +|++..- |. ... ..
T Consensus 74 i~Pa~qs~a~YEd~YLLGTSlaRp~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFE-----------Lt-~ys----l~ 137 (412)
T KOG1706|consen 74 IWPALQSSALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFE-----------LT-FYS----LK 137 (412)
T ss_pred chhhhhhcchhhceeeeccccccchhhhhhhhHHhhcCceeeecccccCCCcceeee-----------ee-eec----cC
Confidence 11111110 011111223344556667789999999999999876 4443110 10 011 12
Q ss_pred CCccccccCCc-------CCHHHHHHHHHHHcCCcccccC-CCCCC
Q 041164 211 GPIPRCKPFKY-------TYEKEIMFTYAYFKRLDYFSTE-CIYSP 248 (357)
Q Consensus 211 ~~i~~irPL~~-------~~k~EI~~~ya~~~~i~~~~~~-~~~~~ 248 (357)
..++.|.|++. -.++|+.+ ||+.+|||+.-++ .|++.
T Consensus 138 P~~kviapwrmp~f~~rf~Gr~Dl~e-Yakq~giPvpvT~k~pwsm 182 (412)
T KOG1706|consen 138 PDVKVIAPWRMPEFYERFKGRKDLLE-YAKQHGIPVPVTPKNPWSM 182 (412)
T ss_pred CcceeeccccchHHHHhhcCchHHHH-HHHhcCCCccccCCCCccc
Confidence 24677888874 34799999 9999999975543 45543
No 92
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.97 E-value=4.5e-10 Score=107.38 Aligned_cols=178 Identities=21% Similarity=0.182 Sum_probs=107.6
Q ss_pred HHHHHHHHHhh-cCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 44 FEEEIHQVIVG-NQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 44 ~~~kv~~~i~k-~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
++.+....|+. ++++. ..+|++++|||+||+|+..+++++. + -+++++|+|.|+ .+..+.+.+++-...|
T Consensus 213 menre~e~I~~i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~al-----g~~R~~ai~vdNG~--mrk~Ea~~V~~tl~~l 284 (552)
T KOG1622|consen 213 MENREEECINEIRKWVG-DYKVLVAVSGGVDSTVCAALLRRAL-----GPDRVHAIHVDNGF--MRKKEAEQVEKTLVYL 284 (552)
T ss_pred hhhhhHHHHHHHHHHhc-ccceEEEecCCchHHHHHHHHHHhh-----CCCceEEEEecccc--hhhhHHHHHHHHHHHc
Confidence 34444444332 22444 6799999999999999999999973 4 589999999998 4566778888888889
Q ss_pred CCCeEEEeeccccC-----CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCC------CEEEcCCChhHHHHHHHHH
Q 041164 122 GLPLKIVSYKDLYG-----WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKV------DKIATGHNADDIAETVLLN 190 (357)
Q Consensus 122 gi~~~iv~~~~~~~-----~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~------~~I~tGh~~dD~aet~l~~ 190 (357)
|+++.+++..+.|- .+-.+-.+... +..-.+++...|.+..+ ..++-|.-.-|+.|...
T Consensus 285 gi~i~v~~as~~f~s~L~~~~dPE~KRkiI--------G~tfikv~~~~~~~l~~k~~~~~~flaQgtL~Pd~ieS~s-- 354 (552)
T KOG1622|consen 285 GIPITVVDASETFLSKLKGVTDPEEKRKII--------GRTFIKVFDPVASELNKKHGEKESFLAQGTLRPDLIESAS-- 354 (552)
T ss_pred CCceEEeechHHHHHhhcccCCHHHhceec--------ccceeeeCcHHHHHhhhccCccceeeecccccchhhhhcc--
Confidence 99999999876552 11111111100 00111223333333222 25666766667665532
Q ss_pred HHccCcc--ccccccccc---cCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 191 ILRGDIA--RLSRCTLIT---TGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 191 l~rG~~~--~l~~~~~~~---~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
+.|.+. .+..-..+. ......-+.+-||.++.++|++. ..+.+|+|...
T Consensus 355 -~~g~~~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~-lgk~lGlp~~L 408 (552)
T KOG1622|consen 355 -VYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVRE-LGKDLGLPESL 408 (552)
T ss_pred -ccCCchhhhhhcccccchHHHHHHHhcccCchhHHHHHHHHHH-hhhhcCCchhh
Confidence 223321 111111100 00000125688999999999999 99999998543
No 93
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=98.83 E-value=1.5e-07 Score=84.88 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=90.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE--ecCCCCC--CChhhHHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS--IDEGISG--YRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~--id~g~~~--~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
|+++.+||||||++.++.+.+. ++|+++. +..+... ++....+.++..|+.+|+|++.+..+..+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-------~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~---- 70 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-------HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEE---- 70 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-------CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCch----
Confidence 6899999999999999988874 2433332 2222111 23345788999999999999887654321
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCcccccc
Q 041164 139 DEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKP 218 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irP 218 (357)
++. ..-+.+.+++.|++.|++|+-..+.-.+-+.+++..- ++..+.|
T Consensus 71 e~~-----------------~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~----------------gl~~~~P 117 (222)
T TIGR00289 71 EKE-----------------VEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCREL----------------GLKSIAP 117 (222)
T ss_pred hHH-----------------HHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHc----------------CCEEecc
Confidence 111 1223344467799999999988665555555555442 2667899
Q ss_pred CCcCCHHHHHHHHHHHcCCcccc
Q 041164 219 FKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 219 L~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
|......++.. +. ..|+...-
T Consensus 118 LW~~d~~~l~e-~i-~~Gf~aiI 138 (222)
T TIGR00289 118 LWHADPEKLMY-EV-AEKFEVII 138 (222)
T ss_pred ccCCCHHHHHH-HH-HcCCeEEE
Confidence 99999988887 76 67776544
No 94
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=98.61 E-value=2.5e-06 Score=79.58 Aligned_cols=194 Identities=17% Similarity=0.131 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHH
Q 041164 35 ICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTV 114 (357)
Q Consensus 35 lC~~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v 114 (357)
+|.+=-.+...++++-.++ .-++|.|+|||||||.+|||++.+..++.+.+ ++.++|+|.--. -....++|
T Consensus 7 y~~~nV~eA~~eRl~~if~------~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~-~i~VlfiD~E~Q--Ys~TidyV 77 (407)
T COG3969 7 YLDENVLEAAIERLEWIFN------TFPRVCVSFSGGKDSGLMLHLVAEVARENGRD-KISVLFIDWEAQ--YSCTIDYV 77 (407)
T ss_pred cCcchHHHHHHHHHHHHHh------cCCeEEEEecCCCchhHHHHHHHHHHHHhCCC-ceEEEEEcchhh--hhhHHHHH
Confidence 3444334444444444443 34789999999999999999999987665322 599999995321 35567888
Q ss_pred HHHHHH-hCC-Ce-EEEeec--cccCCCH-------------HHHHH----HhCCCCCchhH----H----HHHHHHHHH
Q 041164 115 KRNEIQ-YGL-PL-KIVSYK--DLYGWTM-------------DEIVK----VIGLKNNCTFC----G----VFRRQALDR 164 (357)
Q Consensus 115 ~~~~~~-lgi-~~-~iv~~~--~~~~~~i-------------~~~~~----~~~~~~~c~~c----~----~~r~~~l~~ 164 (357)
++.-.. .++ +. +-+-+. ...+.+. +.-.+ +.....+-.++ + .+-..+..=
T Consensus 78 ~em~~~~~dv~~~~yWvcLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~W 157 (407)
T COG3969 78 QEMRESYHDVIETFYWVCLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAW 157 (407)
T ss_pred HHHHhcccCccccceEEEeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHH
Confidence 887775 443 31 222221 0000000 00000 00000111111 1 122233334
Q ss_pred HHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccccccccccc--CCCCCccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 165 GASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITT--GEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 165 ~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~--~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
++++.+++++++|-.+|+-.-.++ .+.+-...+.....|-.+ ..+|.+--+.|+.+|.-+||+. +....+.+|
T Consensus 158 l~~~~~~ta~LvGiRadESlNRf~-ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~-~~Ak~~~~y 232 (407)
T COG3969 158 LSQKRPATAVLVGIRADESLNRFN-AIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWT-ANAKFSYAY 232 (407)
T ss_pred HhccCCceEEEEeecchhhHHHHH-HHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHH-HHHhcCCcc
Confidence 456667799999999987544332 233222111111111111 1233455578999999999999 666666554
No 95
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=98.58 E-value=1.9e-06 Score=77.76 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=88.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEE-EEE-ecCCCCC--CChhhHHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLF-LLS-IDEGISG--YRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~-av~-id~g~~~--~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
|+++.+||||||+..|+.+.+. ++|+ +++ +..+... ++.-..+.++..|+.+|+|++.+......
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-------~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~---- 70 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-------HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTE---- 70 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-------CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCc----
Confidence 5789999999999999998874 2332 222 2332111 12334688999999999999775443211
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCcccccc
Q 041164 139 DEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKP 218 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irP 218 (357)
++.. .-|.+..++.|++.|++|+-..+...+-..+++..- ++..+.|
T Consensus 71 e~~~-----------------e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~l----------------gl~~~~P 117 (223)
T TIGR00290 71 EDEV-----------------EELKGILHTLDVEAVVFGAIYSEYQKTRIERVCREL----------------GLKSFAP 117 (223)
T ss_pred cHHH-----------------HHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhc----------------CCEEecc
Confidence 1111 224444555699999999987655444444444332 2667899
Q ss_pred CCcCCHHHHHHHHHHHcCCcccc
Q 041164 219 FKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 219 L~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
|......|+.. =.-..|+...-
T Consensus 118 LW~~~~~~ll~-e~i~~G~~aiI 139 (223)
T TIGR00290 118 LWHRDPEKLME-EFVEEKFEARI 139 (223)
T ss_pred ccCCCHHHHHH-HHHHcCCeEEE
Confidence 99999999988 66678887654
No 96
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=98.49 E-value=3.3e-06 Score=74.94 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=96.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC----CChhhHHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG----YRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~----~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
++++.+||||||..++|++.+. |++|..+..-....+ ++-...+.+...++.+|+|+...........-+
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~------G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~ev 75 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE------GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREV 75 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc------CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhH
Confidence 6889999999999999999987 888765433222222 234557889999999999988887654221111
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCcccccc
Q 041164 139 DEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKP 218 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irP 218 (357)
+ -|.++-+.++++.|++|.-+.+---+-+.++++--| +..+.|
T Consensus 76 e---------------------~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lG----------------l~~~~P 118 (223)
T COG2102 76 E---------------------ELKEALRRLKVDGIVAGAIASEYQKERVERLCEELG----------------LKVYAP 118 (223)
T ss_pred H---------------------HHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhC----------------CEEeec
Confidence 2 234455566799999999887766666666665432 566889
Q ss_pred CCcCCHHHHHHHHHHHcCCcccc
Q 041164 219 FKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 219 L~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
|......++.. -.-..|+.+.-
T Consensus 119 LWg~d~~ell~-e~~~~Gf~~~I 140 (223)
T COG2102 119 LWGRDPEELLE-EMVEAGFEAII 140 (223)
T ss_pred ccCCCHHHHHH-HHHHcCCeEEE
Confidence 99999999998 77777776643
No 97
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=98.49 E-value=1.5e-06 Score=78.17 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=76.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC--CChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG--YRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~--~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
|+++.+||||||+..++.+.+. + .+...+-+++++... ++.-..+.++..|+.+|+|+..+..+.... +.
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~---~--~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~---~~ 73 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ---H--EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEE---DY 73 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CC---CH
T ss_pred cEEEEEcCcHHHHHHHHHHHHh---C--CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccc---hh
Confidence 7899999999999999988774 1 233333344444332 233346788999999999999988752211 11
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK 220 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~ 220 (357)
. ..|.+..++.+++.|++|+-.-+...+-..+++..- ++..+.||.
T Consensus 74 ~------------------~~l~~~l~~~~v~~vv~GdI~~~~~r~~~e~vc~~l----------------Gl~~~~PLW 119 (218)
T PF01902_consen 74 V------------------EDLKEALKELKVEAVVFGDIDSEYQRNWVERVCERL----------------GLEAVFPLW 119 (218)
T ss_dssp H------------------HHHHHHHCTC--SEEE--TTS-HHHHHHHHHHHHHC----------------T-EEE-TTT
T ss_pred h------------------HHHHHHHHHcCCCEEEECcCCcHHHHHHHHHHHHHc----------------CCEEEeccc
Confidence 1 113344466789999999987444444444444432 266789999
Q ss_pred cCCHHHHHHHHHHHcCCcccc
Q 041164 221 YTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~ 241 (357)
....+++.. -.-..|+...-
T Consensus 120 ~~d~~~ll~-e~i~~Gf~aiI 139 (218)
T PF01902_consen 120 GRDREELLR-EFIESGFEAII 139 (218)
T ss_dssp T--HHHHHH-HHHHTT-EEEE
T ss_pred CCCHHHHHH-HHHHCCCeEEE
Confidence 999999988 66677887644
No 98
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.46 E-value=2.3e-06 Score=87.89 Aligned_cols=135 Identities=16% Similarity=0.265 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCC----CCeeEEEEEecCCCCCCChhhHHHHHHHH
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHN----YGLDLFLLSIDEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~----~g~~v~av~id~g~~~~~~~~~~~v~~~~ 118 (357)
.+...+.+++++. +...-+|.|.+|||.||++++.++.+...... ++..+..+++ |+.+ ..+..+++.++
T Consensus 209 ~lr~~L~~aV~~r--l~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsi--g~~~--~~D~~~Ar~vA 282 (578)
T PLN02549 209 VLREAFEKAVIKR--LMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCV--GLEG--SPDLKAAREVA 282 (578)
T ss_pred HHHHHHHHHHHHH--hccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEec--CCCC--CCHHHHHHHHH
Confidence 3455555555543 22345799999999999999999987633211 0124455444 5533 33578999999
Q ss_pred HHhCCCeEEEeeccccC-CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 119 IQYGLPLKIVSYKDLYG-WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 119 ~~lgi~~~iv~~~~~~~-~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
+.+|.+|+.+.+..... ..++++........+-..-..+-..++.+.+++.|+.+|++|..+|++
T Consensus 283 ~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDEl 348 (578)
T PLN02549 283 DYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEI 348 (578)
T ss_pred HHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhh
Confidence 99999999987753211 112222222112112111112334567788899999999999999987
No 99
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=98.40 E-value=3.2e-06 Score=86.97 Aligned_cols=137 Identities=16% Similarity=0.229 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCC------CCeeEEEEEecCCCCCCChhhHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHN------YGLDLFLLSIDEGISGYRDDSLQTV 114 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~------~g~~v~av~id~g~~~~~~~~~~~v 114 (357)
.+.+...+.+++++. +....+|.+.+|||.||++++.++.+...+.. ....+..++| |+.+ ..+..++
T Consensus 219 ~~~lr~~L~~AV~~r--l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsi--g~~~--~~D~~~A 292 (586)
T PTZ00077 219 LEEIREALEAAVRKR--LMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCI--GLEG--SPDLKAA 292 (586)
T ss_pred HHHHHHHHHHHHHHH--hcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEc--CCCC--CchHHHH
Confidence 344556666666654 33456899999999999999999987633110 0124555555 4433 3457899
Q ss_pred HHHHHHhCCCeEEEeeccccC-CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 115 KRNEIQYGLPLKIVSYKDLYG-WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 115 ~~~~~~lgi~~~iv~~~~~~~-~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
+++|+.+|.+|+.+.+..... ..+.++......+.+-.....+-..++.+.+++.|+.+|++|.-+|++
T Consensus 293 r~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDEl 362 (586)
T PTZ00077 293 RKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDEL 362 (586)
T ss_pred HHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhh
Confidence 999999999999887643211 112233222222211111122334567788889999999999999987
No 100
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=98.35 E-value=5.7e-06 Score=84.73 Aligned_cols=138 Identities=12% Similarity=0.203 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCC--------CCeeEEEEEecCCCCCCChhhHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHN--------YGLDLFLLSIDEGISGYRDDSLQ 112 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~--------~g~~v~av~id~g~~~~~~~~~~ 112 (357)
.+.+...+.+++++. +..+.+|.+.+|||.||++++.++.+...+.. ++..+..++|. +.+ ..+..
T Consensus 209 ~~~lr~~L~~aV~~r--l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig--~~~--~~D~~ 282 (554)
T PRK09431 209 KNELRDALEAAVKKR--LMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVG--LEG--SPDLK 282 (554)
T ss_pred HHHHHHHHHHHHHHH--hcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEe--CCC--CChHH
Confidence 344555666666653 33456899999999999999999987632210 00235555553 332 23578
Q ss_pred HHHHHHHHhCCCeEEEeeccccC-CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 113 TVKRNEIQYGLPLKIVSYKDLYG-WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 113 ~v~~~~~~lgi~~~iv~~~~~~~-~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
+++.+|+.+|.+|+.+.+..... ..++++........|-..-..+-..++.+.++..|+.+|++|.-+|.+.
T Consensus 283 ~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 283 AAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhhh
Confidence 99999999999999998753221 1223333221221221111123345567777778999999999999864
No 101
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.21 E-value=1e-05 Score=84.46 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
+.+...+.++++.. +..+..|.+.+|||.||++++.++.+.. +..+..+++..... ..++..+++.+|+.+
T Consensus 241 e~l~~~l~~aV~~r--l~~d~~vg~~LSGGlDSs~Iaa~~~~~~-----~~~i~t~s~~~~~~--~~dE~~~A~~vA~~~ 311 (628)
T TIGR03108 241 AELIERLREAVRSR--MVADVPLGAFLSGGVDSSAVVALMAGLS-----DTPVNTCSIAFDDP--AFDESAYARQVAERY 311 (628)
T ss_pred HHHHHHHHHHHHHH--HhcCCcceEeecCCccHHHHHHHHHHhc-----CCCCcEEEEecCCC--CCChHHHHHHHHHHh
Confidence 34555555655542 2345579999999999999999887652 22355555543321 235578999999999
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
|++++++.++...-..++.+...... |......+-..++.+.|++ +..++++|+-+|.+.
T Consensus 312 g~~h~~~~~~~~~~~~~~~~~~~~~~--P~~~~~~~~~~~~~~~a~~-~~kV~LsG~GgDElf 371 (628)
T TIGR03108 312 GTNHRVETVDPDDFSLVDRLAGLYDE--PFADSSALPTYRVCELARK-RVTVALSGDGGDELF 371 (628)
T ss_pred CCCCeEEecCHHHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHHC-CCCEEEeccchhhcc
Confidence 99999998764321112222221111 2111222333455566665 799999999999753
No 102
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=98.14 E-value=5e-05 Score=79.81 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=49.3
Q ss_pred CCCEEEEEecCChhHHHHHHHH-------HHHhhhCC----------CC---------------eeEEEEEecCCCCCCC
Q 041164 60 AGERIAIGASGGKDSTVLAFVL-------SELNRRHN----------YG---------------LDLFLLSIDEGISGYR 107 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll-------~~~~~~~~----------~g---------------~~v~av~id~g~~~~~ 107 (357)
+..+++|++|||.||++.+.+. .+....-+ .+ -.+++++.. ....+
T Consensus 347 g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp--~~~ss 424 (700)
T PLN02339 347 GASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMG--SENSS 424 (700)
T ss_pred CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECC--CCCCC
Confidence 3468999999999999877664 22210000 00 013555443 33356
Q ss_pred hhhHHHHHHHHHHhCCCeEEEeecccc
Q 041164 108 DDSLQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 108 ~~~~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
+.+.+.++++|+.+|+.++.+++++.+
T Consensus 425 ~~t~~~A~~la~~lG~~~~~i~I~~~~ 451 (700)
T PLN02339 425 EETRSRAKQLADEIGSSHLDVKIDGVV 451 (700)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCHHHH
Confidence 788899999999999999999998543
No 103
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=98.12 E-value=2.3e-05 Score=81.02 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC-CChhhHHHHHHHHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG-YRDDSLQTVKRNEIQ 120 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~-~~~~~~~~v~~~~~~ 120 (357)
+.+...+.++++.. +....+|.+.+|||.||++++.++.+.. +-.+..++|...-.+ ...++.++++.+|+.
T Consensus 243 ~~l~~~L~~AV~~r--l~sd~pvg~~LSGGlDSs~Iaa~~~~~~-----~~~l~tftigf~~~~~~~~dE~~~A~~vA~~ 315 (589)
T TIGR03104 243 DAILEALRLAVKRR--LVADVPVGVLLSGGLDSSLIVGLLAEAG-----VDGLRTFSIGFEDVGGEKGDEFEYSDIIAER 315 (589)
T ss_pred HHHHHHHHHHHHHH--hhcCCceeEEecCCccHHHHHHHHHHhc-----CCCceEEEEEecCCCCCCCChHHHHHHHHHH
Confidence 44556666666653 3445689999999999999999987752 123555555332111 113457899999999
Q ss_pred hCCCeEEEeeccc-cCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 121 YGLPLKIVSYKDL-YGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 121 lgi~~~iv~~~~~-~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
+|.+++.+.+... +-..++.+...... |...-..+-..++.+.|++ +++++++|+-+|.+
T Consensus 316 ~g~~h~~i~~~~~~~~~~l~~~v~~~~~--P~~~~~~~~~~~l~~~a~~-~~kV~LsGeGaDEl 376 (589)
T TIGR03104 316 FHTRHHKIRIPNHRVLPALPEAVAAMSE--PMVSHDCVAFYLLSEEVSK-HVKVVQSGQGADEV 376 (589)
T ss_pred hCCcCeEEEcCHHHHHHHHHHHHHHhCC--CCCCchHHHHHHHHHHHhC-CCeEEeecCchHhc
Confidence 9999998887532 11122333332222 2211122333456677766 69999999999985
No 104
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.05 E-value=5e-05 Score=77.60 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEE-EEEecCCCCCCChhhHHHHHHHH
Q 041164 40 FYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLF-LLSIDEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 40 f~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~-av~id~g~~~~~~~~~~~v~~~~ 118 (357)
..+.+...++.++++. +.....|.+.+|||+||++++.++.+.... ... -++|..... ...+.++++..|
T Consensus 211 ~~~~l~~~l~~sV~~r--~~advpvg~~lSGGlDSS~Iaa~a~~~~~~-----~~~~~fsvg~~~~--~~~D~~~a~~~A 281 (542)
T COG0367 211 LAEHLRSLLEDAVKRR--LVADVPVGVFLSGGLDSSLIAAIAAEELGK-----EGKTTFTVGFEDS--DSPDAKYARAVA 281 (542)
T ss_pred HHHHHHHHHHHHHHHH--hccCCcEEEEeCCCccHHHHHHHHHHhccc-----cceeeeEeecCCC--CCchHHHHHHHH
Confidence 3455666666666654 234568999999999999999999987332 111 244443322 234688999999
Q ss_pred HHhCCCeEEEeecccc-CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 119 IQYGLPLKIVSYKDLY-GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 119 ~~lgi~~~iv~~~~~~-~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
+.+|.+++.+.+...- -..++++......+.. .-...-..++.+.|++.|..++++|.-+|.+.
T Consensus 282 ~~lg~~h~~~~~~~~e~~~~~~~vv~~~~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADElF 346 (542)
T COG0367 282 KFLGTPHHEIILTNEELLNALPEVVKALDTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADELF 346 (542)
T ss_pred HHhCCCcEEEeecHHHHHHHHHHHHhhcCCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHHHh
Confidence 9999999988775321 1113344433233332 22335567788899999999999999999853
No 105
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00026 Score=68.25 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCC--CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHN--YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~--~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg 122 (357)
.+-+.++++|.-| ..-++-|.+|||.||+..+.++.+..++.. .|-.++.+.| |..+ ++ ++..++++|+-+|
T Consensus 211 r~~~~~aV~KRLM--~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaI--Gle~-SP-DL~aarkVAd~ig 284 (543)
T KOG0571|consen 211 RHTLEKAVRKRLM--TDVPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAI--GLED-SP-DLLAARKVADFIG 284 (543)
T ss_pred HHHHHHHHHHHhh--ccCceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEe--cCCC-Ch-hHHHHHHHHHHhC
Confidence 3334444444323 234689999999999999988876533321 2456666666 6543 23 4889999999999
Q ss_pred CCeEEEeeccccCC-CHHHHHHHhC----CCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 123 LPLKIVSYKDLYGW-TMDEIVKVIG----LKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 123 i~~~iv~~~~~~~~-~i~~~~~~~~----~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
.+|+.+.+...-|+ .++++.-... ..-.|+ .-..+|.+.-+++|...|+-|.-+|.+
T Consensus 285 t~Hhe~~ft~qegidal~eVI~hLETYDvttIRas----tpmyLlsr~Ikk~gvkmvlSGEGsDEi 346 (543)
T KOG0571|consen 285 TIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRAS----TPMYLLSRKIKKLGVKMVLSGEGSDEI 346 (543)
T ss_pred CcceEEEEcHHHHHHHHHHHheeeeccccceEecC----CchHHHHHHHHhcceEEEEecCCchhh
Confidence 99999887644332 1233322111 111111 234677788888999999999998876
No 106
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=97.44 E-value=0.00052 Score=59.33 Aligned_cols=101 Identities=23% Similarity=0.234 Sum_probs=78.1
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCCh--hhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRD--DSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~--~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||=+=-|+||++.+..|.+. |+++.+.+.|..|.++.+ .-.+.++++++.+|+++++-+.+ .++..
T Consensus 2 LLH~CCaPCs~~~~~~L~~~------g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~------~~~w~ 69 (176)
T PF02677_consen 2 LLHICCAPCSTYPLERLREE------GFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYD------PEEWL 69 (176)
T ss_pred eeeecCccccHHHHHHHHHC------CCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCC------HHHHH
Confidence 34445689999999999886 999999999999975432 23567899999999999887643 23333
Q ss_pred HH-------hCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcC
Q 041164 143 KV-------IGLKNNCTFCGVFRRQALDRGASLLKVDKIATG 177 (357)
Q Consensus 143 ~~-------~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tG 177 (357)
+. ......|..|-.+|...-.++|+++|+++..|-
T Consensus 70 ~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtTT 111 (176)
T PF02677_consen 70 RAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTTT 111 (176)
T ss_pred HHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEcc
Confidence 22 113458999999999999999999999987664
No 107
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0036 Score=54.14 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=81.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhh--HHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDS--LQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~--~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
..+|||=.--++||+.++..|.+. |+++.+.+.|..+.+.++-. .+.++++|+++||+++-.+..+.
T Consensus 3 ~~kiLlH~CCAPcs~y~le~l~~~------~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~----- 71 (204)
T COG1636 3 RPKLLLHSCCAPCSGYVLEKLRDS------GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDL----- 71 (204)
T ss_pred CCeeEEEeecCCCcHHHHHHHHhc------CcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccH-----
Confidence 357889889999999999999886 89999999999997643322 45678999999999988877421
Q ss_pred HHHHH-------HhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEc
Q 041164 139 DEIVK-------VIGLKNNCTFCGVFRRQALDRGASLLKVDKIAT 176 (357)
Q Consensus 139 ~~~~~-------~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~t 176 (357)
+...+ .......|..|--+|...-.+.|.++|++++-|
T Consensus 72 ~~w~~~vKg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ftt 116 (204)
T COG1636 72 EKWFERVKGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDVFTT 116 (204)
T ss_pred HHHHHHhhcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCchhhh
Confidence 11111 123457899999999999999999999987654
No 108
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=96.85 E-value=0.015 Score=46.90 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=69.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC----ChhhHHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY----RDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~----~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
+|+|+++|+..|--++.+...+...+ +.+++++||..+.... ..+.++.+.+.+++.+++..++.- +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~--- 71 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL--KAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPG----D--- 71 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh--CCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeC----C---
Confidence 58999999999999999888776553 6789999997764321 122344556667777776543311 0
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccC
Q 041164 139 DEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGD 195 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~ 195 (357)
.. ...+.+++++.+++.|++|++..- .+.+++.|+
T Consensus 72 -~~-----------------~~~I~~~~~~~~~dllviG~~~~~----~~~~~~~Gs 106 (124)
T cd01987 72 -DV-----------------AEAIVEFAREHNVTQIVVGKSRRS----RWRELFRGS 106 (124)
T ss_pred -cH-----------------HHHHHHHHHHcCCCEEEeCCCCCc----hHHHHhccc
Confidence 11 234677889999999999999754 334455554
No 109
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.015 Score=51.07 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=101.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC-CCeEEEeeccccCCCHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG-LPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg-i~~~iv~~~~~~~~~i~ 139 (357)
++-+.+++||- ..+++..+++.. |-.+.++++|.+-. .++......++-++|| +++++..-+.. ..+
T Consensus 46 ~~~~q~a~~G~-~~lvlid~~~~~------~~~~~l~~idT~~~--~PeT~~l~d~VekkY~~i~I~~~~pd~~---e~e 113 (261)
T KOG0189|consen 46 PNLFQTAASGL-EGLVLIDMLSKT------GRPFRLFFIDTLHH--FPETLRLFDAVEKKYGNIRIHVYFPDAV---EVE 113 (261)
T ss_pred hhHHHHHhccc-cchHHHHHHHHc------CCCceeEEeecccc--ChHHHHHHHHHHHhcCceEEEEEcchhH---HHH
Confidence 34466777764 457888888887 66678899998863 5888888888999998 88877643211 111
Q ss_pred HHHHH-hC----CCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccc--cCCCCC
Q 041164 140 EIVKV-IG----LKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLIT--TGEDGP 212 (357)
Q Consensus 140 ~~~~~-~~----~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~--~~~~~~ 212 (357)
...+. .+ ...-..+|+..+-+-+.+.-+.++..+++||...|.- |....+ |+. +... .
T Consensus 114 a~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~----------gtRsel----piVqvD~~f-e 178 (261)
T KOG0189|consen 114 ALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG----------GTRSEL----PIVQVDPVF-E 178 (261)
T ss_pred HHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC----------Cccccc----ceEEecCcc-c
Confidence 11111 11 0122335666666777788888999999999987741 221112 111 1122 2
Q ss_pred ccccccCCcCCHHHHHHHHHHHcCCccc
Q 041164 213 IPRCKPFKYTYEKEIMFTYAYFKRLDYF 240 (357)
Q Consensus 213 i~~irPL~~~~k~EI~~~ya~~~~i~~~ 240 (357)
+-.|.||..|+=.|++. |..-+++||-
T Consensus 179 llK~NPlaN~~~~dV~n-yi~t~nVP~N 205 (261)
T KOG0189|consen 179 LLKINPLANWEFNDVWN-YIRTNNVPYN 205 (261)
T ss_pred eeeecccccccHHHHHH-HHHhcCCcHH
Confidence 55689999999999999 9999999973
No 110
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=96.13 E-value=0.081 Score=42.72 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=63.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCC-----------hhhHHHHHHHHHHhCCCeEEEeec
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYR-----------DDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~-----------~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
+|+|++.|..+|..++.....+... .+.+++++|+-....... .+..+.+.+.+...|++.......
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRI 78 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEe
Confidence 5899999999999999988887554 367999999965432111 122344555666678776544321
Q ss_pred cccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 132 DLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 132 ~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
. + +. ...+.++|.+.+++.|++|++...
T Consensus 79 ~--~----~~-----------------~~~I~~~a~~~~~dlIV~G~~~~~ 106 (132)
T cd01988 79 D--H----DI-----------------ASGILRTAKERQADLIIMGWHGST 106 (132)
T ss_pred c--C----CH-----------------HHHHHHHHHhcCCCEEEEecCCCC
Confidence 1 1 01 123567889999999999998654
No 111
>PRK10490 sensor protein KdpD; Provisional
Probab=95.89 E-value=0.082 Score=57.68 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=69.2
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC-CCChhh---HHHHHHHHHHhCCCeEEEeecccc
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS-GYRDDS---LQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~-~~~~~~---~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
.-+++|+|++||+..|-.|..-..++..+. +-++.++||+.+.. ..+.+. .....++|+++|.++.++.-+
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~--- 322 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARL--GSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP--- 322 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC---
Confidence 346889999999999999988888776653 77999999987632 122222 222336899999997666322
Q ss_pred CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 135 GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 135 ~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
++. ..+.++|++.|++.|++|++..
T Consensus 323 -----dva-----------------~~i~~~A~~~~vt~IViG~s~~ 347 (895)
T PRK10490 323 -----AEE-----------------KAVLRYAREHNLGKIIIGRRAS 347 (895)
T ss_pred -----CHH-----------------HHHHHHHHHhCCCEEEECCCCC
Confidence 122 2366899999999999999864
No 112
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.85 E-value=0.19 Score=44.73 Aligned_cols=139 Identities=19% Similarity=0.142 Sum_probs=87.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChh---------hHHHHHHHHHHhCCCeEEEeeccc
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDD---------SLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~---------~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
+++-.+||||||..-++-+.+. |.+++|+-=-|.-...+++ -.+.+.-+++.+++|++...+...
T Consensus 2 rvvaLiSGGKDScynmm~cv~~------gHeiVaLanl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~i~g~ 75 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCVRL------GHEIVALANLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRRIRGR 75 (277)
T ss_pred cEEEEEeCChHHHHHHHHHHHc------CCeeeeeecccCCcccchhHHHHHHHhhhHHHHHHHHHHhcCceeeeeccCc
Confidence 6888999999999988888776 8888776422221100111 124566789999999998876521
Q ss_pred c-------CCCH-HHHHHHhCCCCCchhHHHHHHHHHHHHHHHC-CCCEEEcCCChhHHHHHHHHHHHccCccccccccc
Q 041164 134 Y-------GWTM-DEIVKVIGLKNNCTFCGVFRRQALDRGASLL-KVDKIATGHNADDIAETVLLNILRGDIARLSRCTL 204 (357)
Q Consensus 134 ~-------~~~i-~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~-g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~ 204 (357)
. ..+- +++. -.|.+|..+-++. ....|.+|.-+.|.-.+-..|+++-=+
T Consensus 76 s~nq~l~Y~~t~~DEvE--------------DLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL~-------- 133 (277)
T KOG2316|consen 76 SINQKLQYTKTEGDEVE--------------DLYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRLG-------- 133 (277)
T ss_pred ccccccccccCCCchHH--------------HHHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhhC--------
Confidence 1 1111 1111 3466777777777 788999999998887777777765311
Q ss_pred cccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 205 ITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 205 ~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
+..+.+|+.-...++.. =.-..|+.
T Consensus 134 --------L~~Ls~LW~rdQ~~LL~-eMi~~g~~ 158 (277)
T KOG2316|consen 134 --------LVSLSYLWQRDQEELLQ-EMILSGLD 158 (277)
T ss_pred --------ceeehHHHhccHHHHHH-HHHHcCCC
Confidence 22345565555666655 45555654
No 113
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=95.73 E-value=0.14 Score=40.58 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=62.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC--------ChhhHHHHHHHHH---HhCCCeEEEeec
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY--------RDDSLQTVKRNEI---QYGLPLKIVSYK 131 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~--------~~~~~~~v~~~~~---~lgi~~~iv~~~ 131 (357)
+|+|+++++..+..++.++..+.+.. +.++.++|+....... ..+..+.+..+.. ..|+++...-..
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 78 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLE 78 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 58999999999999999988876653 7899999997654321 1122233333333 456766544321
Q ss_pred cccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 132 DLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 132 ~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
+.. ...+.+++++.+++.|++|.+...
T Consensus 79 ---~~~---------------------~~~i~~~~~~~~~dlvvig~~~~~ 105 (130)
T cd00293 79 ---GDP---------------------AEAILEAAEELGADLIVMGSRGRS 105 (130)
T ss_pred ---CCC---------------------HHHHHHHHHHcCCCEEEEcCCCCC
Confidence 111 234677889999999999987654
No 114
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=95.67 E-value=0.17 Score=53.28 Aligned_cols=96 Identities=19% Similarity=0.134 Sum_probs=73.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC-C---hhhHHHHHHHHHHhCCCeEEEeeccccCC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY-R---DDSLQTVKRNEIQYGLPLKIVSYKDLYGW 136 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~-~---~~~~~~v~~~~~~lgi~~~iv~~~~~~~~ 136 (357)
.++|+|++||+..|--+.-...++..+. +-+.++|||+.+-... + ...+....++|++||-++.++.-.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~----- 320 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG----- 320 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC-----
Confidence 4899999999999999998888776653 6789999999775322 2 233556778999999999887532
Q ss_pred CHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 137 TMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 137 ~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
++. ..+.++|+..++++|++|.+..--
T Consensus 321 ---dv~-----------------~~i~~ya~~~~~TkiViG~~~~~r 347 (890)
T COG2205 321 ---DVA-----------------KAIARYAREHNATKIVIGRSRRSR 347 (890)
T ss_pred ---cHH-----------------HHHHHHHHHcCCeeEEeCCCcchH
Confidence 222 236788999999999999987643
No 115
>PRK09982 universal stress protein UspD; Provisional
Probab=95.49 E-value=0.3 Score=40.54 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=32.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
++|||++.|+.+|..++....++.+. .+-+++++||...
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~ 42 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDG 42 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccC
Confidence 58999999999999999888877554 3778999999643
No 116
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=95.08 E-value=0.31 Score=40.29 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=57.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC----C----hh--------hHHHHHHHHHHhCCCe
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY----R----DD--------SLQTVKRNEIQYGLPL 125 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~----~----~~--------~~~~v~~~~~~lgi~~ 125 (357)
++|||++.|...|..++.....+.+. .+-+++++|++...... . .. ..+.++++++..|++.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPI 81 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 58999999999999988887776543 26789999995432100 0 00 0112233344455554
Q ss_pred EEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 126 KIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 126 ~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
....+ ..|.. ...+.++|++.+++.|+.|++..
T Consensus 82 ~~~~~--~~G~p---------------------~~~I~~~a~~~~~DLIV~Gs~~~ 114 (144)
T PRK15118 82 TETLS--GSGDL---------------------GQVLVDAIKKYDMDLVVCGHHQD 114 (144)
T ss_pred eEEEE--EecCH---------------------HHHHHHHHHHhCCCEEEEeCccc
Confidence 22211 11211 23355789999999999999963
No 117
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=95.02 E-value=0.25 Score=40.88 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=31.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
+|||++.|...|..++.+..++... .+.+++++|+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~ 37 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHP 37 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEecc
Confidence 5899999999999999999887544 377999999954
No 118
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=94.94 E-value=0.081 Score=41.55 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=49.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC---CCCC-----C---hhhHHHHHHHHHHhCCCeEEEeec
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG---ISGY-----R---DDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g---~~~~-----~---~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
+|+|+.+||..|++++.-++++.+..+..+++.+..+..- ...+ . .-..+.+++.+..+|+|+.+++..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 5899999999999999999998777655666666655311 1111 1 122566888899999999998753
No 119
>PRK10116 universal stress protein UspC; Provisional
Probab=93.94 E-value=1.9 Score=35.34 Aligned_cols=101 Identities=11% Similarity=0.120 Sum_probs=61.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC---CCCh----h--------hHHHHHHHHHHhCCCeE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS---GYRD----D--------SLQTVKRNEIQYGLPLK 126 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~---~~~~----~--------~~~~v~~~~~~lgi~~~ 126 (357)
.+|||++.|..+|..++.....+.+.. +-+++++|+-.... .... + ..+.++++....|++..
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPIE 81 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 589999999999998888877765543 66888888732211 0000 0 01233444555666543
Q ss_pred EEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHH
Q 041164 127 IVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETV 187 (357)
Q Consensus 127 iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~ 187 (357)
.+.+. .|.. ...+.++|++.+++.|++|++.......+
T Consensus 82 ~~~~~--~G~~---------------------~~~I~~~a~~~~~DLiV~g~~~~~~~~~~ 119 (142)
T PRK10116 82 KTFIA--YGEL---------------------SEHILEVCRKHHFDLVICGNHNHSFFSRA 119 (142)
T ss_pred EEEEe--cCCH---------------------HHHHHHHHHHhCCCEEEEcCCcchHHHHH
Confidence 33221 2211 12355789999999999999976544443
No 120
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=93.34 E-value=0.19 Score=49.35 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=36.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC----CC----CCChhhHHHHHHHHHHhC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG----IS----GYRDDSLQTVKRNEIQYG 122 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g----~~----~~~~~~~~~v~~~~~~lg 122 (357)
.+|.|.||||+||++++++++..-.. +-.+.++.|-.| .. ..++....-+++++..++
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~---ne~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P 316 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPE---NEPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYP 316 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCC---CCceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCC
Confidence 57999999999999999999986432 223444444332 21 122333455666666654
No 121
>PRK15005 universal stress protein F; Provisional
Probab=92.92 E-value=1 Score=36.96 Aligned_cols=38 Identities=5% Similarity=0.016 Sum_probs=26.1
Q ss_pred CEEEEEecCChhH--HHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 62 ERIAIGASGGKDS--TVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 62 ~kvlVa~SGG~DS--~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
++|||++-|...| .-++....++.+. .+-+++++|+-.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~ 42 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIP 42 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEc
Confidence 5799999999875 3555555544333 367888888854
No 122
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=91.42 E-value=0.64 Score=36.13 Aligned_cols=70 Identities=11% Similarity=0.188 Sum_probs=47.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC---CCCC-----C---hhhHHHHHHHHHHhCCCeEEEee
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG---ISGY-----R---DDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g---~~~~-----~---~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
.+|+|+..+|.-|+.++.-+++..++.+..+++.+..+..- ...+ . ....+.+++.++.+|+|+.+++.
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 48999999999999988888887666544455555544211 0001 1 12356688888999999999875
Q ss_pred c
Q 041164 131 K 131 (357)
Q Consensus 131 ~ 131 (357)
.
T Consensus 84 ~ 84 (95)
T TIGR00853 84 A 84 (95)
T ss_pred h
Confidence 3
No 123
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=91.10 E-value=0.88 Score=36.18 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=32.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
++|+|+++|+.+|..++.++..+.... +.+++++|+..-.
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~--~~~i~~l~v~~~~ 42 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRS--GAEITLLHVIPPP 42 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEESC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhh--CCeEEEEEeeccc
Confidence 589999999999999998888765543 7799999996544
No 124
>PRK15456 universal stress protein UspG; Provisional
Probab=90.73 E-value=5 Score=32.91 Aligned_cols=38 Identities=18% Similarity=0.048 Sum_probs=27.8
Q ss_pred CEEEEEecCCh--hHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 62 ERIAIGASGGK--DSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 62 ~kvlVa~SGG~--DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
++|||++.|+. .|..++.....+.+. .+ +++++|+-..
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~~-~l~llhv~~~ 42 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--DG-VIHLLHVLPG 42 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--CC-eEEEEEEecC
Confidence 57999999984 677777777776443 24 7889888543
No 125
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=90.44 E-value=0.78 Score=36.33 Aligned_cols=79 Identities=14% Similarity=0.262 Sum_probs=51.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC---C--CC-----Chh---hHHHHHHHHHHhCCCeEEEe
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI---S--GY-----RDD---SLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~---~--~~-----~~~---~~~~v~~~~~~lgi~~~iv~ 129 (357)
+|+++.++|..|+.++.-+++..+..+..+++.+..+.... . .+ .++ ..+.+++.++.+|+|+.+++
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeC
Confidence 79999999999998888888876665444455555443210 0 01 111 24567888889999999998
Q ss_pred eccccC---CCHHHHH
Q 041164 130 YKDLYG---WTMDEIV 142 (357)
Q Consensus 130 ~~~~~~---~~i~~~~ 142 (357)
... |+ ...+.+.
T Consensus 83 ~~~-Y~~~~~~~~~~~ 97 (104)
T PRK09590 83 PQA-YIPIPMGIEKMA 97 (104)
T ss_pred HHH-cCCCccCHHHHH
Confidence 643 44 4555544
No 126
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=89.18 E-value=1.3 Score=34.76 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=49.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC---C-----Chh---hHHHHHHHHHHhCCCeEEEee
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG---Y-----RDD---SLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~---~-----~~~---~~~~v~~~~~~lgi~~~iv~~ 130 (357)
.+|++..|+|..|+.|..-+.+..+..+....+.++..+..... . .++ -...+++.++..|+|+.+++.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCCEEEEChHHHHHHHHHHHHhcccCCCeEEeCH
Confidence 37999999999999999999987666545566666654321100 0 111 245678889999999999986
Q ss_pred c
Q 041164 131 K 131 (357)
Q Consensus 131 ~ 131 (357)
.
T Consensus 82 ~ 82 (102)
T COG1440 82 L 82 (102)
T ss_pred H
Confidence 4
No 127
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=88.50 E-value=1.8 Score=33.69 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=45.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC---CCCC-----Ch---hhHHHHHHHHHHhCCCeEEEeec
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG---ISGY-----RD---DSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g---~~~~-----~~---~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
+|+++..+|.-|+.++.-+++..+.++..+++.+..+... ...+ .+ ...+.+++.+...++|+..++..
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChH
Confidence 5899999999999998888887666644555555544211 0011 12 22455666677789999998764
Q ss_pred c
Q 041164 132 D 132 (357)
Q Consensus 132 ~ 132 (357)
.
T Consensus 81 ~ 81 (96)
T cd05564 81 D 81 (96)
T ss_pred h
Confidence 3
No 128
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=87.98 E-value=0.52 Score=32.40 Aligned_cols=31 Identities=35% Similarity=0.734 Sum_probs=22.8
Q ss_pred CcccccccCCCceeeccCCCccchHHHHHHHHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFE 45 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~~ 45 (357)
...|..|++ +-.+++. -+..+|+.||-+...
T Consensus 16 sr~C~vCg~-~~gliRk-ygL~~CRqCFRe~A~ 46 (54)
T PTZ00218 16 SRQCRVCSN-RHGLIRK-YGLNVCRQCFRENAE 46 (54)
T ss_pred CCeeecCCC-cchhhhh-cCcchhhHHHHHhhH
Confidence 457999996 5555544 488999999986643
No 129
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=87.05 E-value=0.43 Score=30.96 Aligned_cols=21 Identities=29% Similarity=0.738 Sum_probs=14.5
Q ss_pred ccccccccccccccccchhhH
Q 041164 290 EQGTCERCGYISSQKWCKACV 310 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~ 310 (357)
....|+.||..+..++|..|.
T Consensus 16 ~i~~C~~C~nlse~~~C~IC~ 36 (41)
T PF02132_consen 16 NIKFCSICGNLSEEDPCEICS 36 (41)
T ss_dssp H-EE-SSS--EESSSS-HHHH
T ss_pred cCCccCCCCCcCCCCcCcCCC
Confidence 357899999999999999997
No 130
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=85.33 E-value=5.5 Score=39.93 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=42.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHH-------hhhCC--CCeeEEEEEec--------------------CCCCCCChhhHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSEL-------NRRHN--YGLDLFLLSID--------------------EGISGYRDDSLQ 112 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~-------~~~~~--~g~~v~av~id--------------------~g~~~~~~~~~~ 112 (357)
.-.++.+|||.||.+.+.+.+.+ -++.+ ..-++..+.-+ -|....+++...
T Consensus 350 aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~ 429 (706)
T KOG2303|consen 350 AGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRR 429 (706)
T ss_pred CceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHH
Confidence 45899999999999988776633 11100 01111112111 232333566677
Q ss_pred HHHHHHHHhCCCeEEEeec
Q 041164 113 TVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 113 ~v~~~~~~lgi~~~iv~~~ 131 (357)
.++++++..|--|.-+.++
T Consensus 430 rak~La~~igs~H~~i~iD 448 (706)
T KOG2303|consen 430 RAKELANQIGSYHIDLNID 448 (706)
T ss_pred HHHHHHHhhcceeeeeeeh
Confidence 8899999999777766654
No 131
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=85.10 E-value=17 Score=35.35 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=61.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC--Ch-------hhHHHHHHHHHH------hCCCe
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY--RD-------DSLQTVKRNEIQ------YGLPL 125 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~--~~-------~~~~~v~~~~~~------lgi~~ 125 (357)
-+||||++.|..-|.-++..+.++.+..+.+-+++++||-...... .+ +-.+.+++.++. .|+++
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 4689999999999998888887775442124789999984321111 11 112344444444 36765
Q ss_pred EEEeecc-ccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 126 KIVSYKD-LYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 126 ~iv~~~~-~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
...-... .+.....+. ...+.++|++.++|.|++|-..+
T Consensus 85 e~~vv~~~~~~~~~G~p-----------------ae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 85 ETALLGTDEYLFGPGDY-----------------AEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred EEEEEeccccccCCCCH-----------------HHHHHHHHHHcCCCEEEECCCCC
Confidence 5433210 000000011 23356899999999999998765
No 132
>PRK11175 universal stress protein UspE; Provisional
Probab=85.08 E-value=15 Score=34.28 Aligned_cols=133 Identities=10% Similarity=0.114 Sum_probs=69.4
Q ss_pred eeeccCCCccchHHHHHHHHHHHHHHHHh------hcCCCCCCCEEEEEecCChhH-------HHHHHHHHHHhhhCCCC
Q 041164 25 ALKRPKTLEQICRECFYEVFEEEIHQVIV------GNQLFKAGERIAIGASGGKDS-------TVLAFVLSELNRRHNYG 91 (357)
Q Consensus 25 ~~~~~~~~~~lC~~cf~~~~~~kv~~~i~------k~~l~~~~~kvlVa~SGG~DS-------~~LL~ll~~~~~~~~~g 91 (357)
.++.-.++......-|......++.+... +..-..+..+|++|+.|+.++ ..++..+..+.+.. .+
T Consensus 110 LiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~ 188 (305)
T PRK11175 110 LVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQDWPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NH 188 (305)
T ss_pred EEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecccccCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cC
Confidence 34443444444455554444444443211 111223457899999998653 34555555543332 15
Q ss_pred eeEEEEEecCCCC--------CCChh---------hHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhH
Q 041164 92 LDLFLLSIDEGIS--------GYRDD---------SLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFC 154 (357)
Q Consensus 92 ~~v~av~id~g~~--------~~~~~---------~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c 154 (357)
.+++++|+-.... ..... ..+.++++.+.+|++.....+. .|..
T Consensus 189 a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~--~G~~----------------- 249 (305)
T PRK11175 189 AEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGIDEEQTHVE--EGLP----------------- 249 (305)
T ss_pred CceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHHHHhCCChhheeec--cCCH-----------------
Confidence 5788888743221 00010 1224555666677664322111 1110
Q ss_pred HHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 155 GVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 155 ~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
...+.++|++.+++.|++|++..
T Consensus 250 ----~~~I~~~a~~~~~DLIVmG~~~~ 272 (305)
T PRK11175 250 ----EEVIPDLAEHLDAELVILGTVGR 272 (305)
T ss_pred ----HHHHHHHHHHhCCCEEEECCCcc
Confidence 12356789999999999999764
No 133
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.48 E-value=34 Score=34.04 Aligned_cols=85 Identities=21% Similarity=0.378 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCC-CCCC---EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhh
Q 041164 37 RECFYEVFEEEIHQVIVG--NQLF-KAGE---RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDS 110 (357)
Q Consensus 37 ~~cf~~~~~~kv~~~i~k--~~l~-~~~~---kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~ 110 (357)
+..|+.-+.+...+.+.. ..+. .... -.+|++=|.--.|+...+++.+.++ +.++.+|..|. |++..
T Consensus 71 ~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~---~~kvllVaaD~----~RpAA 143 (451)
T COG0541 71 GQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKK---GKKVLLVAADT----YRPAA 143 (451)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHc---CCceEEEeccc----CChHH
Confidence 356777777777777773 2221 1111 2567888888888888888877652 78888888876 67888
Q ss_pred HHHHHHHHHHhCCCeEEE
Q 041164 111 LQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 111 ~~~v~~~~~~lgi~~~iv 128 (357)
.+.++.++++.|+|++-.
T Consensus 144 ~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 144 IEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred HHHHHHHHHHcCCceecC
Confidence 999999999999999775
No 134
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=83.99 E-value=20 Score=33.20 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=61.8
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHH
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
..++|+|.+| +-+-+|.++|.+.... .++.++.+|--||. ..+.+++.+|||++.+....... .+
T Consensus 89 ~~~ri~i~VS--K~~HCL~DLL~r~~~g-~L~~eI~~VIsNH~----------dl~~~v~~~~IPfhhip~~~~~k--~e 153 (287)
T COG0788 89 QRKRIAILVS--KEDHCLGDLLYRWRIG-ELPAEIVAVISNHD----------DLRPLVERFDIPFHHIPVTKENK--AE 153 (287)
T ss_pred cCceEEEEEe--chHHHHHHHHHHHhcC-CcCCceEEEEcCCH----------HHHHHHHHcCCCeeeccCCCCcc--hH
Confidence 3467888887 6888999999876332 14677777765552 36788999999999998765421 01
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 140 EIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 140 ~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
. ...+.++..+.|++.|+++-.+
T Consensus 154 ~------------------E~~~~~ll~~~~~DlvVLARYM 176 (287)
T COG0788 154 A------------------EARLLELLEEYGADLVVLARYM 176 (287)
T ss_pred H------------------HHHHHHHHHHhCCCEEeehhhH
Confidence 1 1224566678899999998776
No 135
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.58 E-value=5.7 Score=32.18 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCCh----------hHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGK----------DSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY 106 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~----------DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~ 106 (357)
.+.+.++++. +..+++|.|+|+|++ |-.++.-++.+..+.. +-+++.||++-|-+.+
T Consensus 12 ~e~~~~~~~~---~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a--p~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 12 YESFEETLKN---VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA--PEDVHFVHVYVGNRPY 78 (128)
T ss_pred HHHHHHHHHH---HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC--CCceEEEEEEecCCCc
Confidence 4455666665 456788999999999 5677777777765533 6689999999997654
No 136
>PRK11175 universal stress protein UspE; Provisional
Probab=82.24 E-value=19 Score=33.56 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=28.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEe
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSI 99 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~i 99 (357)
++|||++.|..+|-.++.....+.+.. +-+++++|+
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v 39 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLP 39 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEe
Confidence 479999999999988888777765543 567777775
No 137
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=81.77 E-value=28 Score=32.86 Aligned_cols=94 Identities=7% Similarity=0.049 Sum_probs=57.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
..||+|.+||+ .+-|-.++...... .++.++.+|--|+. .+.+.|+++|||+++++.... . .++
T Consensus 93 ~~kiavl~Sg~--g~nl~al~~~~~~~-~l~~~i~~visn~~----------~~~~~A~~~gIp~~~~~~~~~-~--~~~ 156 (289)
T PRK13010 93 RPKVVIMVSKF--DHCLNDLLYRWRMG-ELDMDIVGIISNHP----------DLQPLAVQHDIPFHHLPVTPD-T--KAQ 156 (289)
T ss_pred CeEEEEEEeCC--CccHHHHHHHHHCC-CCCcEEEEEEECCh----------hHHHHHHHcCCCEEEeCCCcc-c--ccc
Confidence 35899999998 44445555554322 24567777766553 135889999999999876431 1 011
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHH
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETV 187 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~ 187 (357)
. -..+.++.++.+.+.|++.-.+.=+-..+
T Consensus 157 ~-----------------~~~~~~~l~~~~~Dlivlagym~il~~~~ 186 (289)
T PRK13010 157 Q-----------------EAQILDLIETSGAELVVLARYMQVLSDDL 186 (289)
T ss_pred h-----------------HHHHHHHHHHhCCCEEEEehhhhhCCHHH
Confidence 1 11234555678899998887665433333
No 138
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=79.76 E-value=34 Score=32.16 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHH
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
+..||+|..||+ .+.|-.++...... .++.++.+|.-|.. .+..+|+++|||+++++.+.. +..
T Consensus 88 ~~~ri~vl~Sg~--gsnl~al~~~~~~~-~~~~~i~~visn~~----------~~~~lA~~~gIp~~~~~~~~~---~~~ 151 (286)
T PRK06027 88 ERKRVVILVSKE--DHCLGDLLWRWRSG-ELPVEIAAVISNHD----------DLRSLVERFGIPFHHVPVTKE---TKA 151 (286)
T ss_pred cCcEEEEEEcCC--CCCHHHHHHHHHcC-CCCcEEEEEEEcCh----------hHHHHHHHhCCCEEEeccCcc---ccc
Confidence 346899999999 55556666554322 24678887766542 245569999999999866421 111
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 140 EIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 140 ~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
+. -..+.++.++.+.+.|++.-.+-=
T Consensus 152 ~~-----------------~~~~~~~l~~~~~Dlivlagy~~i 177 (286)
T PRK06027 152 EA-----------------EARLLELIDEYQPDLVVLARYMQI 177 (286)
T ss_pred hh-----------------HHHHHHHHHHhCCCEEEEecchhh
Confidence 11 112344456678898888765543
No 139
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=76.83 E-value=61 Score=30.38 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=56.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
..||+|.+||+ .+.|-.++...... .++.++.+|.-|+. .+..+|+++|||+++++... . +-.+
T Consensus 84 ~~ki~vl~Sg~--g~nl~~l~~~~~~g-~l~~~i~~visn~~----------~~~~~A~~~gIp~~~~~~~~-~--~~~~ 147 (280)
T TIGR00655 84 LKRVAILVSKE--DHCLGDLLWRWYSG-ELDAEIALVISNHE----------DLRSLVERFGIPFHYIPATK-D--NRVE 147 (280)
T ss_pred CcEEEEEEcCC--ChhHHHHHHHHHcC-CCCcEEEEEEEcCh----------hHHHHHHHhCCCEEEcCCCC-c--chhh
Confidence 35899999999 45555566654322 13567777766652 13346999999999886532 1 1011
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHH
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETV 187 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~ 187 (357)
. -..+.+..++.+.+.|+++-.+-=+-..+
T Consensus 148 ~-----------------e~~~~~~l~~~~~Dlivlagym~il~~~~ 177 (280)
T TIGR00655 148 H-----------------EKRQLELLKQYQVDLVVLAKYMQILSPDF 177 (280)
T ss_pred h-----------------HHHHHHHHHHhCCCEEEEeCchhhCCHHH
Confidence 1 11234555677899999887665433333
No 140
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=76.68 E-value=28 Score=30.72 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=47.6
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEee
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
++|+-+|-==+++++.++..+..+ +.+|.+++.|.. +....+.++.+++.+|+|++....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~----R~ga~eQL~~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTY----RIGAVEQLKTYAEILGVPFYVART 64 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTS----STHHHHHHHHHHHHHTEEEEESST
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCC----CccHHHHHHHHHHHhccccchhhc
Confidence 678899988888889998887654 778999999863 566688899999999999987543
No 141
>PRK00076 recR recombination protein RecR; Reviewed
Probab=75.13 E-value=3.2 Score=36.70 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=19.4
Q ss_pred ccccccccccccccccchhhH
Q 041164 290 EQGTCERCGYISSQKWCKACV 310 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~ 310 (357)
....|+.||..+..++|..|.
T Consensus 52 ~i~~C~~C~~lse~~~C~IC~ 72 (196)
T PRK00076 52 KIKHCSVCGNLTEQDPCEICS 72 (196)
T ss_pred cCCcCCCCCCcCCCCcCCCCC
Confidence 467899999999999999998
No 142
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=75.12 E-value=7.9 Score=30.66 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=29.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
.+|++..++|..|+.|+.-+....+..+..++|.++..+.
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~ 43 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL 43 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecch
Confidence 4899999999999999976666555554556666655543
No 143
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=74.28 E-value=52 Score=34.20 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC-CCCChhhHHHHHHHHHHhCCCeEEEeeccccCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI-SGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGW 136 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~-~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~ 136 (357)
+..+++|+|-=.-..|+++...+|.+..++. |..-+..+|.+-+ .||. -+.+.++++.+ .|..+.|. . ..|.
T Consensus 66 i~~~e~I~I~gDyD~DGitstail~~~L~~~--g~~~~~~~IP~R~~eGYG-l~~~~i~~~~~-~~~~LiIt-v--D~Gi 138 (575)
T PRK11070 66 LREGTRIIVVGDFDADGATSTALSVLALRSL--GCSNVDYLVPNRFEDGYG-LSPEVVDQAHA-RGAQLIVT-V--DNGI 138 (575)
T ss_pred HHCCCEEEEEEecCccHHHHHHHHHHHHHHc--CCCceEEEeCCCCcCCCC-CCHHHHHHHHh-cCCCEEEE-E--cCCc
Confidence 4567899998888888888887777665443 5532334554322 1221 11244555544 47665543 2 1232
Q ss_pred C-HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 137 T-MDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 137 ~-i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
+ .++ .++|+++|.++|+|-||.-
T Consensus 139 ~~~e~----------------------i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 139 SSHAG----------------------VAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred CCHHH----------------------HHHHHHCCCCEEEECCCCC
Confidence 2 222 3568889999999999964
No 144
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=74.00 E-value=33 Score=32.29 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=57.8
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHH
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
+..||+|..||+ .+.|-.++...... ..+.++.+|.-|+. .+..+|+++|||+++++.... +..
T Consensus 88 ~~~ri~vl~Sg~--g~nl~al~~~~~~~-~~~~~i~~visn~~----------~~~~lA~~~gIp~~~~~~~~~---~~~ 151 (286)
T PRK13011 88 ARPKVLIMVSKF--DHCLNDLLYRWRIG-ELPMDIVGVVSNHP----------DLEPLAAWHGIPFHHFPITPD---TKP 151 (286)
T ss_pred cCceEEEEEcCC--cccHHHHHHHHHcC-CCCcEEEEEEECCc----------cHHHHHHHhCCCEEEeCCCcC---chh
Confidence 345899999996 45555555554322 24678888766652 145569999999998865321 111
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHH
Q 041164 140 EIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETV 187 (357)
Q Consensus 140 ~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~ 187 (357)
+. -..+.++.++.+.+.|++...+-=+-..+
T Consensus 152 ~~-----------------~~~~~~~l~~~~~Dlivlagy~~il~~~~ 182 (286)
T PRK13011 152 QQ-----------------EAQVLDVVEESGAELVVLARYMQVLSPEL 182 (286)
T ss_pred hh-----------------HHHHHHHHHHhCcCEEEEeChhhhCCHHH
Confidence 11 11234455677899999887665433333
No 145
>PRK13844 recombination protein RecR; Provisional
Probab=73.65 E-value=3.7 Score=36.43 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=19.8
Q ss_pred ccccccccccccccccchhhHH
Q 041164 290 EQGTCERCGYISSQKWCKACVL 311 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~~ 311 (357)
....|+.||..+..++|..|.-
T Consensus 56 ~i~~C~~C~~lte~~~C~IC~d 77 (200)
T PRK13844 56 NIKKCVYCQALTEDDVCNICSN 77 (200)
T ss_pred hCCcCCCCCCCCCCCCCCCCCC
Confidence 4678999999999999999983
No 146
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.63 E-value=4.1 Score=36.02 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=19.7
Q ss_pred ccccccccccccccccchhhHH
Q 041164 290 EQGTCERCGYISSQKWCKACVL 311 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~~ 311 (357)
....|+.||..+..++|..|.-
T Consensus 52 ~i~~C~~C~~lse~~~C~IC~d 73 (195)
T TIGR00615 52 NLRTCSVCGAISDQEVCNICSD 73 (195)
T ss_pred cCCcCCCCCCCCCCCcCCCCCC
Confidence 4678999999999999999983
No 147
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=72.43 E-value=3.9 Score=38.04 Aligned_cols=29 Identities=14% Similarity=-0.002 Sum_probs=25.4
Q ss_pred CccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 212 PIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 212 ~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
.+.++-|+++|+-.+||. |.+..++|+..
T Consensus 202 ~~~r~~pll~ws~t~vw~-~l~~~~~p~c~ 230 (282)
T KOG2644|consen 202 QFMRLLPLLEWSYTDVWD-LLREGNLPYCG 230 (282)
T ss_pred hhhhhcccccchHHHHHH-HHhcCCCceee
Confidence 366788999999999999 99999999754
No 148
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=70.35 E-value=10 Score=33.60 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCCEEEEEecCChhHHH-HHHHHHHHhhhCCCCeeEEEEE
Q 041164 60 AGERIAIGASGGKDSTV-LAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~-LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+.+|+|++|||.-+.- ...+++.+.+. |.+|.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~---G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE---GAEVTPIV 40 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC---cCEEEEEE
Confidence 57799999999998888 58888888553 78887765
No 149
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=70.34 E-value=53 Score=29.10 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=36.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEee
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
.||+|.+||+ ++.+..++..+.+.. ...++.++.-|..- ..+.++|+++|||+..++.
T Consensus 2 ~ki~vl~sg~--gs~~~~ll~~~~~~~-~~~~I~~vvs~~~~--------~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 2 KRIVVLASGN--GSNLQAIIDACAAGQ-LPAEIVAVISDRPD--------AYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred ceEEEEEcCC--ChhHHHHHHHHHcCC-CCcEEEEEEecCcc--------chHHHHHHHcCCCEEEECc
Confidence 3799999998 444445555543321 24566665555431 1367889999999988654
No 150
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.17 E-value=28 Score=34.47 Aligned_cols=108 Identities=26% Similarity=0.341 Sum_probs=62.5
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHH
Q 041164 61 GERIAIGASGGK-DSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 61 ~~kvlVa~SGG~-DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
|.-|||+=.=|. -|+.||.++.++.++ + .+++|- | +++...++--+++||++...+.+-.+ ..++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~---~vLYVs-G-----EES~~QiklRA~RL~~~~~~l~l~aE--t~~e 158 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR---G---KVLYVS-G-----EESLQQIKLRADRLGLPTNNLYLLAE--TNLE 158 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc---C---cEEEEe-C-----CcCHHHHHHHHHHhCCCccceEEehh--cCHH
Confidence 333444333332 588888888887543 3 455551 2 45567778888999987644433211 1234
Q ss_pred HHHHHhC--CC------------------CCchhHHHHH--HHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 140 EIVKVIG--LK------------------NNCTFCGVFR--RQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 140 ~~~~~~~--~~------------------~~c~~c~~~r--~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
++..... .+ .|=+. ...| ...|.++|+..|...+++||---|-
T Consensus 159 ~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsV-sQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG 223 (456)
T COG1066 159 DIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSV-SQVREVAAELMRLAKTKNIAIFIVGHVTKEG 223 (456)
T ss_pred HHHHHHHhcCCCEEEEeccceeecccccCCCCcH-HHHHHHHHHHHHHHHHcCCeEEEEEEEcccc
Confidence 4433211 11 11111 2244 3678899999999999999987663
No 151
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=70.03 E-value=82 Score=28.85 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCC--CCCChhh-HHHHHH-H
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGI--SGYRDDS-LQTVKR-N 117 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~--~~~~~~~-~~~v~~-~ 117 (357)
.+-..+.+.|++. .+..++.+.+++|||..=.-++..|.+.....+..+ +++++++|+-. ...++++ ...+++ +
T Consensus 15 ~~a~~i~~~i~~~-~~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~Vp~~~~~Sn~~~~~~~l 93 (253)
T PTZ00285 15 YTSNYIIKRINDF-KPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPRDHPQSYHYFMKENF 93 (253)
T ss_pred HHHHHHHHHHHHH-hhhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCCchhHeEEECCcEEecCCCCchHHHHHHHHHHH
Confidence 3444455555442 133456899999999988888877776532222343 58888889743 3333332 233433 3
Q ss_pred HHHhCCCe
Q 041164 118 EIQYGLPL 125 (357)
Q Consensus 118 ~~~lgi~~ 125 (357)
...+++|-
T Consensus 94 ~~~~~ip~ 101 (253)
T PTZ00285 94 FDHVDIKE 101 (253)
T ss_pred hccCCCCH
Confidence 44555553
No 152
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=69.42 E-value=29 Score=31.14 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCC---hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGG---KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG---~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~ 118 (357)
+.+++++...+.+. ++-.-+--.-|+ .|...|-.++..+.++ | .++||....+. ..+.+.|
T Consensus 74 ~~i~~~l~~al~~v----p~a~GvnNhmGS~~T~~~~~m~~vl~~l~~~---g----l~FvDS~T~~~-----s~a~~~A 137 (213)
T PF04748_consen 74 EEIRKRLEAALARV----PGAVGVNNHMGSRFTSDREAMRWVLEVLKER---G----LFFVDSRTTPR-----SVAPQVA 137 (213)
T ss_dssp HHHHHHHHHHHCCS----TT-SEEEEEE-CCHHC-HHHHHHHHHHHHHT---T-----EEEE-S--TT------SHHHHH
T ss_pred HHHHHHHHHHHHHC----CCcEEEecCCCccccCCHHHHHHHHHHHHHc---C----CEEEeCCCCcc-----cHHHHHH
Confidence 45666777666653 222233333444 5777777888877554 2 46778766432 3466889
Q ss_pred HHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHH
Q 041164 119 IQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAE 185 (357)
Q Consensus 119 ~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ae 185 (357)
+++|+|....++--....+.+.+. -....+.++|++.| ..|++||-.....+
T Consensus 138 ~~~gvp~~~rdvfLD~~~~~~~I~--------------~ql~~~~~~A~~~G-~aI~Igh~~p~Tl~ 189 (213)
T PF04748_consen 138 KELGVPAARRDVFLDNDQDEAAIR--------------RQLDQAARIARKQG-SAIAIGHPRPETLE 189 (213)
T ss_dssp HHCT--EEE-SEETTST-SHHHHH--------------HHHHHHHHHHHCCS-EEEEEEE-SCCHHH
T ss_pred HHcCCCEEeeceecCCCCCHHHHH--------------HHHHHHHHhhhhcC-cEEEEEcCCHHHHH
Confidence 999999988776322223333333 23456778888866 58899998876443
No 153
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=69.36 E-value=8.2 Score=31.46 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=33.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~ 118 (357)
.||+|+++|+....-...++.++.+. |+++.++. ++...+++....
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~---g~~v~vv~--------S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA---GWEVRVVL--------SPSAERFVTPEG 46 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT---TSEEEEEE--------SHHHHHHSHHHG
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC---CCEEEEEE--------CCcHHHHhhhhc
Confidence 47999999999999999999998664 78887763 454455554444
No 154
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=68.18 E-value=2.1 Score=27.90 Aligned_cols=25 Identities=28% Similarity=0.715 Sum_probs=20.0
Q ss_pred cccccccCCCceeeccCCCccchHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
|+|..|+. ..++.-..++..+|..|
T Consensus 1 m~Cp~Cg~-~~~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 1 MKCPNCGS-KEIVFDPERGELVCPNC 25 (43)
T ss_dssp ESBTTTSS-SEEEEETTTTEEEETTT
T ss_pred CCCcCCcC-CceEEcCCCCeEECCCC
Confidence 68999997 44666667788999988
No 155
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=67.21 E-value=5 Score=28.44 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=20.1
Q ss_pred CcccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
...|..|+. +-.++. .-.+|+-||-+.-
T Consensus 21 ~nRC~~cGR-prg~~R---kf~lcR~cfRE~A 48 (61)
T COG0199 21 RNRCRRCGR-PRGVIR---KFGLCRICFRELA 48 (61)
T ss_pred cccccccCC-Cccchh---hhhhHHHHHHHHh
Confidence 346999996 554544 3689999997653
No 156
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.60 E-value=74 Score=29.13 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCCh---hHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGK---DSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~---DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~ 118 (357)
+.+.+++++++.+..... .+-=.=|+. |=-+|-.++..+.++ .++++|.|..+-+ .+-+++
T Consensus 106 ~e~~~rl~~a~~~v~~~~----GlnNhmGs~~tsn~~aM~~~m~~Lk~r-------~l~flDs~T~a~S-----~a~~iA 169 (250)
T COG2861 106 EEILRRLRKAMNKVPDAV----GLNNHMGSRFTSNEDAMEKLMEALKER-------GLYFLDSGTIANS-----LAGKIA 169 (250)
T ss_pred HHHHHHHHHHHhhCccce----eehhhhhhhhcCcHHHHHHHHHHHHHC-------CeEEEcccccccc-----hhhhhH
Confidence 467788888887753221 111112221 222334445555332 3678899875422 356789
Q ss_pred HHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHH
Q 041164 119 IQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 190 (357)
Q Consensus 119 ~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~ 190 (357)
+++|+|+...++--....+...+. -..+.+.++|++.| ..|+.||-.+ ..-.+|..
T Consensus 170 k~~gVp~~~rdvfLD~e~~~~~V~--------------kql~~~~~~Ark~G-~ai~IGh~~~-~Tv~vl~~ 225 (250)
T COG2861 170 KEIGVPVIKRDVFLDDEDTEAAVL--------------KQLDAAEKLARKNG-SAIGIGHPHK-NTVAVLQQ 225 (250)
T ss_pred hhcCCceeeeeeeecCcCCHHHHH--------------HHHHHHHHHHHhcC-ceEEecCCch-hHHHHHHH
Confidence 999999987765211122223332 23567889999977 6899999855 33334433
No 157
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=65.42 E-value=3.5 Score=28.24 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=20.4
Q ss_pred ccccccCCC-ceeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRK-AALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~-a~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..- .......++..+|+.||.+.|
T Consensus 28 ~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~f 58 (58)
T PF00412_consen 28 KCSKCGKPLNDGDFYEKDGKPYCKDCYQKRF 58 (58)
T ss_dssp BETTTTCBTTTSSEEEETTEEEEHHHHHHHT
T ss_pred ccCCCCCccCCCeeEeECCEEECHHHHhhhC
Confidence 688888641 111344578999999998653
No 158
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=65.21 E-value=11 Score=28.82 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~ 104 (357)
+.++++|+|...+|..|..++..|.+. ||+ +.++.-|+.
T Consensus 58 ~~~~~~ivv~C~~G~rs~~aa~~L~~~------G~~--~~~l~GG~~ 96 (100)
T cd01523 58 LPDDQEVTVICAKEGSSQFVAELLAER------GYD--VDYLAGGMK 96 (100)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHc------Cce--eEEeCCcHH
Confidence 456678888889999999999888876 887 566676663
No 159
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=64.98 E-value=20 Score=26.79 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=28.2
Q ss_pred EEEEEecCChhHHHHH-HHHHHHhhhCCCCeeEEEEEec
Q 041164 63 RIAIGASGGKDSTVLA-FVLSELNRRHNYGLDLFLLSID 100 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL-~ll~~~~~~~~~g~~v~av~id 100 (357)
||+++.++|.-|+.|+ .-+++..++. |+++...+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~--gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKEL--GIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHT--TECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhc--cCceEEEEec
Confidence 6899999999999999 7777766554 6777766665
No 160
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=64.70 E-value=16 Score=32.55 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 57 LFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
++.++| |++++||+-.|.-++.++..+++. |..+.+++-+.+
T Consensus 83 ~i~~~D-vviaiS~SGeT~el~~~~~~aK~~---g~~liaiT~~~~ 124 (202)
T COG0794 83 MITPGD-VVIAISGSGETKELLNLAPKAKRL---GAKLIAITSNPD 124 (202)
T ss_pred CCCCCC-EEEEEeCCCcHHHHHHHHHHHHHc---CCcEEEEeCCCC
Confidence 455554 889999999999999999887553 889999987654
No 161
>PRK10867 signal recognition particle protein; Provisional
Probab=64.08 E-value=73 Score=31.92 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhh-cCCC--CCCCE---EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHH
Q 041164 39 CFYEVFEEEIHQVIVG-NQLF--KAGER---IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQ 112 (357)
Q Consensus 39 cf~~~~~~kv~~~i~k-~~l~--~~~~k---vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~ 112 (357)
.+...+.+.+.+.+.. ..-+ ..+.. ++++..|-==|++++.++..+.++ .|.+|.+|..|. +++...+
T Consensus 73 ~~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~----~R~aa~e 146 (433)
T PRK10867 73 QVIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADV----YRPAAIE 146 (433)
T ss_pred HHHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccc----cchHHHH
Confidence 3445555555555542 1111 11222 455666666677778888776543 267888888876 3566667
Q ss_pred HHHHHHHHhCCCeEEE
Q 041164 113 TVKRNEIQYGLPLKIV 128 (357)
Q Consensus 113 ~v~~~~~~lgi~~~iv 128 (357)
..+.+++..|+|++..
T Consensus 147 QL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 147 QLKTLGEQIGVPVFPS 162 (433)
T ss_pred HHHHHHhhcCCeEEec
Confidence 7888899999998765
No 162
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=63.97 E-value=88 Score=26.29 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC-eEEEeeccccCCCHHHHHHHhCCCCC
Q 041164 72 KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP-LKIVSYKDLYGWTMDEIVKVIGLKNN 150 (357)
Q Consensus 72 ~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~-~~iv~~~~~~~~~i~~~~~~~~~~~~ 150 (357)
.-|.-++....++.+.. |.++.++.+- +. +...+.+++....+|++ .+.++-+.......+.
T Consensus 15 ~~~~e~l~~A~~La~~~--g~~v~av~~G-~~----~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~---------- 77 (164)
T PF01012_consen 15 PVSLEALEAARRLAEAL--GGEVTAVVLG-PA----EEAAEALRKALAKYGADKVYHIDDPALAEYDPEA---------- 77 (164)
T ss_dssp HHHHHHHHHHHHHHHCT--TSEEEEEEEE-TC----CCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHH----------
T ss_pred HHHHHHHHHHHHHHhhc--CCeEEEEEEe-cc----hhhHHHHhhhhhhcCCcEEEEecCccccccCHHH----------
Confidence 34556666666776553 6689999885 21 23345566777778986 4444443322222222
Q ss_pred chhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 151 CTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 151 c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
....+.+++++.+.+.|++||+..+.
T Consensus 78 -------~a~~l~~~~~~~~~~lVl~~~t~~g~ 103 (164)
T PF01012_consen 78 -------YADALAELIKEEGPDLVLFGSTSFGR 103 (164)
T ss_dssp -------HHHHHHHHHHHHT-SEEEEESSHHHH
T ss_pred -------HHHHHHHHHHhcCCCEEEEcCcCCCC
Confidence 23567888888999999999988643
No 163
>PRK05920 aromatic acid decarboxylase; Validated
Probab=63.79 E-value=15 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
+.+|++++|||.-+.-.+.+++++.+. |.+|.++.
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~---g~~V~vi~ 37 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAA---DYEVHLVI 37 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 578999999999998888888888653 77877764
No 164
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=62.47 E-value=12 Score=32.63 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
+|+|++|||.-..-...+++.+.+. |.+|.++.
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~---g~~V~vv~ 33 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEA---GVEVHLVI 33 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 5899999999999999999998653 77887774
No 165
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=61.49 E-value=1.3e+02 Score=27.55 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCC
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGI 103 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~ 103 (357)
.+-+.+...+++.. ....+++.|++|||..-..+...|.+.....+..+ +++++++|+-.
T Consensus 15 ~~a~~i~~~i~~~~-~~~~~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~ 75 (259)
T TIGR00502 15 WAARHIANRINEFK-PTAARPFVLGLPTGGTPIGTYKQLIELHQAGKISFQNVTTFNMDEYA 75 (259)
T ss_pred HHHHHHHHHHHHhC-ccccCceEEEEcCCCChHHHHHHHHHHhhccCCchhHeEEEeCeecC
Confidence 34444555555421 22356799999999998888888876532222333 58899999764
No 166
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=61.31 E-value=17 Score=31.68 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=28.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+|+|++||+..+.-...+++.+.+. |.+|.++.
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~---g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKR---GYQVTVLM 35 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 57999999999999999999988653 77877664
No 167
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.04 E-value=90 Score=30.06 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=47.4
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
.+|++-|--=+|++..+++.+.++ |++|.+.--|+ ++....+.++.|++++|++++.-
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~---g~~VllaA~DT----FRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQ---GKSVLLAAGDT----FRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHC---CCeEEEEecch----HHHHHHHHHHHHHHHhCCeEEcc
Confidence 567888888889999988887654 88988877665 46777889999999999998764
No 168
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=60.51 E-value=79 Score=29.79 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCC--CEEEcCC
Q 041164 101 EGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKV--DKIATGH 178 (357)
Q Consensus 101 ~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~--~~I~tGh 178 (357)
||.+|.. .+.++++...++.||.++-++++. |+.+. ....-.+...-|-.....+..+++. ..|++||
T Consensus 42 hGsPGSH-~DFkYi~~~l~~~~iR~I~iN~PG-f~~t~--------~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~gH 111 (297)
T PF06342_consen 42 HGSPGSH-NDFKYIRPPLDEAGIRFIGINYPG-FGFTP--------GYPDQQYTNEERQNFVNALLDELGIKGKLIFLGH 111 (297)
T ss_pred cCCCCCc-cchhhhhhHHHHcCeEEEEeCCCC-CCCCC--------CCcccccChHHHHHHHHHHHHHcCCCCceEEEEe
Confidence 4555533 347899999999999999998853 33221 1112234455677777777777765 4789999
Q ss_pred ChhHH
Q 041164 179 NADDI 183 (357)
Q Consensus 179 ~~dD~ 183 (357)
+..=.
T Consensus 112 SrGce 116 (297)
T PF06342_consen 112 SRGCE 116 (297)
T ss_pred ccchH
Confidence 98643
No 169
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=60.44 E-value=1.3e+02 Score=27.24 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=59.3
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC--ChhhHHHHHHHHH---Hh
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY--RDDSLQTVKRNEI---QY 121 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~--~~~~~~~v~~~~~---~l 121 (357)
++.+.|++. |-++.||++-+-+=..+..+|... --|.+++|+.|+.|. .+...+.++++.+ +.
T Consensus 99 ~~i~~Ik~~-----G~kaGlalnP~T~~~~l~~~l~~v-------D~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~ 166 (229)
T PRK09722 99 RLIDEIRRA-----GMKVGLVLNPETPVESIKYYIHLL-------DKITVMTVDPGFAGQPFIPEMLDKIAELKALRERN 166 (229)
T ss_pred HHHHHHHHc-----CCCEEEEeCCCCCHHHHHHHHHhc-------CEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhc
Confidence 444556554 458999999998888888888775 257888999998653 4555555555443 44
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCC
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh 178 (357)
|.++.+ .+ .-|.+.+.+. .+.+.|++.++.|-
T Consensus 167 ~~~~~I-eV--DGGI~~~~i~----------------------~~~~aGad~~V~Gs 198 (229)
T PRK09722 167 GLEYLI-EV--DGSCNQKTYE----------------------KLMEAGADVFIVGT 198 (229)
T ss_pred CCCeEE-EE--ECCCCHHHHH----------------------HHHHcCCCEEEECh
Confidence 544322 11 2234434332 23456999999884
No 170
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=59.97 E-value=18 Score=31.51 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+|+|++||+.-..-...+++.+.+. |.+|.++.
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~---g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKL---GYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 37999999999888888888888653 77888775
No 171
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=59.93 E-value=65 Score=28.71 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=39.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecCC--CCCCChhh--HHHHHHHHHHhCCCeEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDEG--ISGYRDDS--LQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~g--~~~~~~~~--~~~v~~~~~~lgi~~~iv 128 (357)
+...|++|||..=..++..|.....+.+.. -+++++.+|++ ....++.+ ....+.+++.++++...+
T Consensus 19 ~~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~~l~~~~~~~~~~i 90 (232)
T cd01399 19 PPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHIDIKPENI 90 (232)
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHHHhhccCCCCHHHE
Confidence 467899999987666676665432111111 26889999966 43222221 223456788888875433
No 172
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=58.02 E-value=71 Score=32.23 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChh-HHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKD-STVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL 123 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~D-S~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi 123 (357)
+.++...|..++-.-.|.|++ +.||.| +..|..+|.++ |.+++++-.-++.+.+...+.+.+.+.++.+|.
T Consensus 298 r~rl~dal~d~~~~L~GKrva--i~Gdp~~~i~LarfL~el------GmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~ 369 (457)
T CHL00073 298 EEQIWESLKDYLDLVRGKSVF--FMGDNLLEISLARFLIRC------GMIVYEIGIPYMDKRYQAAELALLEDTCRKMNV 369 (457)
T ss_pred HHHHHHHHHHHHHHHCCCEEE--EECCCcHHHHHHHHHHHC------CCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCC
Confidence 445556666665444688884 888855 45555666675 999888866555443444456667777888887
Q ss_pred CeEE
Q 041164 124 PLKI 127 (357)
Q Consensus 124 ~~~i 127 (357)
+..+
T Consensus 370 ~~~v 373 (457)
T CHL00073 370 PMPR 373 (457)
T ss_pred CCcE
Confidence 6433
No 173
>PRK05766 rps14P 30S ribosomal protein S14P; Reviewed
Probab=57.25 E-value=14 Score=25.39 Aligned_cols=29 Identities=41% Similarity=0.774 Sum_probs=21.3
Q ss_pred cccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
..|..|+. +-.++..+ +..+|+-||-+..
T Consensus 15 nrC~~~Gr-~rgvirkf-~l~lcR~~FRe~A 43 (52)
T PRK05766 15 RECQRCGR-KQGLIRKY-GLYLCRQCFREVA 43 (52)
T ss_pred ceeecCCC-CceeHHhh-CCcccHHHHHHHH
Confidence 46999996 55555544 6779999997553
No 174
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=56.66 E-value=22 Score=31.23 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=28.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+|++++|||..+.-...+++.+.+.. |.+|.++.
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~--g~~V~vv~ 36 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVG--EIETHLVI 36 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhc--CCeEEEEE
Confidence 379999999999999999999886522 67777764
No 175
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=56.43 E-value=73 Score=23.10 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=41.2
Q ss_pred EEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC-CCChhhHHHHHHHHHHhCCCeEE
Q 041164 66 IGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS-GYRDDSLQTVKRNEIQYGLPLKI 127 (357)
Q Consensus 66 Va~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~-~~~~~~~~~v~~~~~~lgi~~~i 127 (357)
+-+=||.=++=++..|.++ +.++++++-...+. ...++..+.+.+..++.|++++.
T Consensus 3 vViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 3 VVIGGGFIGIELAEALAEL------GKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEECcCHHHHHHHHHHHHh------CcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4556777778888888776 78999888776554 34556677788888888987654
No 176
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=56.08 E-value=1.2e+02 Score=26.68 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=50.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+|.+||+-.... .++..+... ....++.+|.-|+.- ..+.++|+++|+|+++++.....+ -+..
T Consensus 2 riail~sg~gs~~~--~ll~~~~~~-~l~~~I~~vi~~~~~--------~~~~~~A~~~gip~~~~~~~~~~~--~~~~- 67 (190)
T TIGR00639 2 RIVVLISGNGSNLQ--AIIDACKEG-KIPASVVLVISNKPD--------AYGLERAAQAGIPTFVLSLKDFPS--REAF- 67 (190)
T ss_pred eEEEEEcCCChhHH--HHHHHHHcC-CCCceEEEEEECCcc--------chHHHHHHHcCCCEEEECccccCc--hhhh-
Confidence 78999998765544 344443222 134566666555421 234678999999998865432110 0000
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
-..+.+..++.+.+.+++....-
T Consensus 68 ----------------~~~~~~~l~~~~~D~iv~~~~~~ 90 (190)
T TIGR00639 68 ----------------DQAIIEELRAHEVDLVVLAGFMR 90 (190)
T ss_pred ----------------hHHHHHHHHhcCCCEEEEeCcch
Confidence 01234455667889888766543
No 177
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=56.06 E-value=6.7 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.682 Sum_probs=15.8
Q ss_pred CCcccccccCCCceeeccCCCccchHHH
Q 041164 12 GGRLCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 12 ~~~~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
|++.|..|+. .+ ..+..||..|
T Consensus 1 m~~~Cp~Cg~---~~---~~~~~fC~~C 22 (26)
T PF13248_consen 1 MEMFCPNCGA---EI---DPDAKFCPNC 22 (26)
T ss_pred CcCCCcccCC---cC---CcccccChhh
Confidence 4678999995 22 2467899887
No 178
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=53.68 E-value=47 Score=29.64 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=48.4
Q ss_pred CeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccc-----cCCCHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 041164 91 GLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDL-----YGWTMDEIVKVIGLKNNCTFCGVFRRQALDRG 165 (357)
Q Consensus 91 g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~-----~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~ 165 (357)
|+++.+++= | . ...++.+++.+|+++.+...-+. .|.....+.. +.-+...+.++
T Consensus 93 G~~v~iiSg--g-----~--~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~-----------~~~K~~~l~~~ 152 (212)
T COG0560 93 GAKVVIISG--G-----F--TFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICD-----------GEGKAKALREL 152 (212)
T ss_pred CCEEEEEcC--C-----h--HHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecC-----------cchHHHHHHHH
Confidence 777777631 1 2 46789999999998766543211 1111111110 12466788899
Q ss_pred HHHCCCC---EEEcCCChhHHH
Q 041164 166 ASLLKVD---KIATGHNADDIA 184 (357)
Q Consensus 166 A~~~g~~---~I~tGh~~dD~a 184 (357)
+.++|.+ .++.|++++|+.
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHH
Confidence 9999997 999999999975
No 179
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=53.43 E-value=1.4e+02 Score=25.40 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCC---hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHH
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGG---KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEI 119 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG---~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~ 119 (357)
..-..+.+.+.+.-...+..+|+|.+..| -|..+++..|.+. |++|.++.+..... ..++.+...+.++
T Consensus 7 ~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~------G~~V~v~~~~~~~~--~~~~~~~~~~~~~ 78 (169)
T PF03853_consen 7 NAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANR------GYNVTVYLVGPPEK--LSEDAKQQLEILK 78 (169)
T ss_dssp HHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHT------TCEEEEEEEESSSS--TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHC------CCeEEEEEEecccc--CCHHHHHHHHHHH
Confidence 33344444444431124566787777766 6777777777665 88988877755432 3444566677888
Q ss_pred HhCCCeEE
Q 041164 120 QYGLPLKI 127 (357)
Q Consensus 120 ~lgi~~~i 127 (357)
+.|+++..
T Consensus 79 ~~g~~~~~ 86 (169)
T PF03853_consen 79 KMGIKIIE 86 (169)
T ss_dssp HTT-EEES
T ss_pred hcCCcEee
Confidence 88866644
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.46 E-value=2.5e+02 Score=28.09 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=40.9
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
.+|+..|--=|++++.++..+..+ |.++..+..|.. +....+..+.+++.+|+|+.+.
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~----RiaAvEQLk~yae~lgipv~v~ 302 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHS----RIGTVQQLQDYVKTIGFEVIAV 302 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCc----chHHHHHHHHHhhhcCCcEEec
Confidence 466676656677777777766433 678888877753 3345677788899999998865
No 181
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=49.99 E-value=30 Score=34.14 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=29.5
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+.+|+|++||+..+.-.+.+++.+.+. |.+|.++.
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~---g~~V~vv~ 37 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVRQ---GAEVKVIM 37 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHhC---CCEEEEEE
Confidence 3678999999999999999999988543 77877664
No 182
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=49.99 E-value=50 Score=26.62 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=29.4
Q ss_pred CCCCCEEEEEe-cCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGA-SGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~-SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++++|+|-. +||.-|..++.+|..+ |++ +..++-|+
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~------G~~--v~~L~GG~ 121 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESL------GID--VPLLEGGY 121 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHc------CCc--eeEeCCcH
Confidence 45677888888 5899999988888776 886 55677776
No 183
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=49.87 E-value=2.8e+02 Score=28.15 Aligned_cols=89 Identities=28% Similarity=0.320 Sum_probs=57.0
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCC-
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGW- 136 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~- 136 (357)
+..+++|+|-----.|.++...+|.+..... |+++.....+.-..++. .+. ....-+.++.+.. ..|.
T Consensus 33 i~~~~~I~I~~d~DaDGitS~ail~~~L~~~--g~~~~~~ip~~~~~~~g-----~~~-~~~~~~~~liItv---D~G~~ 101 (491)
T COG0608 33 IEKGEKILIYGDYDADGITSAAILAKALRRL--GADVDYYIPNRFEEGYG-----AIR-KLKEEGADLIITV---DNGSG 101 (491)
T ss_pred HHcCCEEEEEEecCcccHHHHHHHHHHHHHc--CCceEEEeCCCccccch-----HHH-HHHhcCCCEEEEE---CCCcc
Confidence 4567899999999999888888888765553 67777766665443332 223 4555566665541 1222
Q ss_pred CHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCC
Q 041164 137 TMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHN 179 (357)
Q Consensus 137 ~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~ 179 (357)
..+++ ..|++.|.++|+|=||
T Consensus 102 ~~~~i----------------------~~~~~~g~~vIVtDHH 122 (491)
T COG0608 102 SLEEI----------------------ARAKELGIDVIVTDHH 122 (491)
T ss_pred cHHHH----------------------HHHHhCCCcEEEECCC
Confidence 22222 3455679999999999
No 184
>PRK14974 cell division protein FtsY; Provisional
Probab=49.54 E-value=1.9e+02 Score=27.91 Aligned_cols=56 Identities=16% Similarity=0.363 Sum_probs=36.9
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEE
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKI 127 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~i 127 (357)
+++..|--=|+++..++..+.+. |+++.++..|. ++....+..+.+++.+|+|++.
T Consensus 145 ~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~Dt----~R~~a~eqL~~~a~~lgv~v~~ 200 (336)
T PRK14974 145 FVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAGDT----FRAGAIEQLEEHAERLGVKVIK 200 (336)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCc----CcHHHHHHHHHHHHHcCCceec
Confidence 34444444566777777666443 67777776663 3455567788899999998864
No 185
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=49.54 E-value=1.3e+02 Score=30.07 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=41.3
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
.+|+..|--=||+++.++..+.++ |.+|.++..|. ++....+.++.+++..++|++..
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~----~R~aA~eQLk~~a~~~~vp~~~~ 161 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADT----FRAGAFDQLKQNATKARIPFYGS 161 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcc----cchhHHHHHHHHhhccCCeEEee
Confidence 455666666677777777766543 77888888875 34555677788899999998754
No 186
>PLN02828 formyltetrahydrofolate deformylase
Probab=49.53 E-value=2.1e+02 Score=26.69 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=41.9
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
+..||+|.+||+-- .|..++...+.. .++.++.+|.-|+.-.. ...+.+.|+++|||+++++..
T Consensus 69 ~~~riavlvSg~g~--nl~~ll~~~~~g-~l~~eI~~ViSn~~~~~-----~a~~~~~A~~~gIP~~~~~~~ 132 (268)
T PLN02828 69 PKYKIAVLASKQDH--CLIDLLHRWQDG-RLPVDITCVISNHERGP-----NTHVMRFLERHGIPYHYLPTT 132 (268)
T ss_pred CCcEEEEEEcCCCh--hHHHHHHhhhcC-CCCceEEEEEeCCCCCC-----CchHHHHHHHcCCCEEEeCCC
Confidence 34589999999754 444555544322 24578888877764211 125678899999999988664
No 187
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=48.47 E-value=2e+02 Score=25.77 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC--CChhhHHHHHHHHHH---h
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG--YRDDSLQTVKRNEIQ---Y 121 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~--~~~~~~~~v~~~~~~---l 121 (357)
++.+.|++. |-++.||++=+-.=..+..++... --|.+++++.|..| +-+...+.++++.+. .
T Consensus 97 ~~l~~ik~~-----g~k~GlalnP~Tp~~~i~~~l~~~-------D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~ 164 (220)
T PRK08883 97 RTLQLIKEH-----GCQAGVVLNPATPLHHLEYIMDKV-------DLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDES 164 (220)
T ss_pred HHHHHHHHc-----CCcEEEEeCCCCCHHHHHHHHHhC-------CeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhc
Confidence 444555554 457899999887777777777765 25677899999876 445555555555443 3
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCC
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh 178 (357)
|..+.+. -..|.+.+.+.. ..+.|++.++.|-
T Consensus 165 ~~~~~I~---vdGGI~~eni~~----------------------l~~aGAd~vVvGS 196 (220)
T PRK08883 165 GRDIRLE---IDGGVKVDNIRE----------------------IAEAGADMFVAGS 196 (220)
T ss_pred CCCeeEE---EECCCCHHHHHH----------------------HHHcCCCEEEEeH
Confidence 4333221 124555454432 2456899988884
No 188
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=47.32 E-value=17 Score=30.20 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=26.8
Q ss_pred ccccccCCCceeeccCCCccchHHHHH--HHHHHHHHHHHhhc
Q 041164 15 LCSTCNQRKAALKRPKTLEQICRECFY--EVFEEEIHQVIVGN 55 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~~~~lC~~cf~--~~~~~kv~~~i~k~ 55 (357)
.|.+|+. ..+. .+..+|..|+- +....+|+++|+++
T Consensus 5 nC~~Cgk--lF~~---~~~~iCp~C~~~~e~~f~kV~~yLr~~ 42 (137)
T TIGR03826 5 NCPKCGR--LFVK---TGRDVCPSCYEEEEREFEKVYKFLRKH 42 (137)
T ss_pred cccccch--hhhh---cCCccCHHHhHHHHHHHHHHHHHHHHC
Confidence 6999995 2222 36789999986 55667888888875
No 189
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.28 E-value=1.6e+02 Score=29.09 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=45.4
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhC-CCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEee
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRH-NYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~-~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
++|+-.|--=+++++.++..+.... ..|.+|.++++|.. +....+.++.+++.+|+|+.++..
T Consensus 178 ~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~----R~aa~eQL~~~a~~lgvpv~~~~~ 241 (388)
T PRK12723 178 ILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY----RIGAKKQIQTYGDIMGIPVKAIES 241 (388)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc----cHHHHHHHHHHhhcCCcceEeeCc
Confidence 5567777677788888887664321 13679999999963 455566789999999999877653
No 190
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.07 E-value=2.2e+02 Score=28.26 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=70.7
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccc-c---CCCHH
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDL-Y---GWTMD 139 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~-~---~~~i~ 139 (357)
..|++-|+--.+++..++..++++ |+++..|.-|. ++....+.++..+.+-++|++.--.+.. . ...++
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkk---G~K~~LvcaDT----FRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKK---GYKVALVCADT----FRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhc---CCceeEEeecc----cccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 567888888888888888877654 89988888776 4556677889999999999987421100 0 01122
Q ss_pred HHHHHhCCCCCchhHHHH-----HHHHHHHHHHHCCCCEEE------cCCChhHHHHHHHHH
Q 041164 140 EIVKVIGLKNNCTFCGVF-----RRQALDRGASLLKVDKIA------TGHNADDIAETVLLN 190 (357)
Q Consensus 140 ~~~~~~~~~~~c~~c~~~-----r~~~l~~~A~~~g~~~I~------tGh~~dD~aet~l~~ 190 (357)
.+.++.-..--+...++. .+.-+.++++..+-+-|+ +|..+.+++..+--.
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 222210000111112222 234455666666665443 577777777665433
No 191
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=47.01 E-value=3.1e+02 Score=27.43 Aligned_cols=85 Identities=21% Similarity=0.398 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhhcC--C-CCCCCE---EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhH
Q 041164 38 ECFYEVFEEEIHQVIVGNQ--L-FKAGER---IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSL 111 (357)
Q Consensus 38 ~cf~~~~~~kv~~~i~k~~--l-~~~~~k---vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~ 111 (357)
.-+...+.+.+.+.+.... + +.++.+ ++++..|.-=|++++.++..+..+ .|.++.++..|. +++...
T Consensus 71 ~~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~--~g~kV~lV~~D~----~R~~a~ 144 (428)
T TIGR00959 71 QQFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKK--QGKKVLLVACDL----YRPAAI 144 (428)
T ss_pred HHHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHh--CCCeEEEEeccc----cchHHH
Confidence 3455555556666554321 1 112223 455666666677878877775422 277888888886 345556
Q ss_pred HHHHHHHHHhCCCeEEE
Q 041164 112 QTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 112 ~~v~~~~~~lgi~~~iv 128 (357)
+.++.+++..|+|++..
T Consensus 145 ~QL~~~a~~~gvp~~~~ 161 (428)
T TIGR00959 145 EQLKVLGQQVGVPVFAL 161 (428)
T ss_pred HHHHHHHHhcCCceEec
Confidence 67788899999998764
No 192
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=46.56 E-value=54 Score=29.33 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCCCCC-Chh-hHHHHHH-HH
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGISGY-RDD-SLQTVKR-NE 118 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~~~~-~~~-~~~~v~~-~~ 118 (357)
.+...+++.+.+ +.++.+++|||..=..++..|.+.. . ..+ +++.+.+|+-.-.. +++ ....+++ +.
T Consensus 10 ~i~~~i~~~i~~------~~~~~l~lsGGstp~~~y~~L~~~~-~--i~w~~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ll 80 (219)
T cd01400 10 RIAEALAAAIAK------RGRFSLALSGGSTPKPLYELLAAAP-A--LDWSKVHVFLGDERCVPPDDPDSNYRLAREALL 80 (219)
T ss_pred HHHHHHHHHHHh------cCeEEEEECCCccHHHHHHHhcccc-C--CCCceEEEEEeeccccCCCCcccHHHHHHHHhh
Confidence 344444444443 4579999999999888888777642 1 232 68889999865221 222 2334443 34
Q ss_pred HHhCCC
Q 041164 119 IQYGLP 124 (357)
Q Consensus 119 ~~lgi~ 124 (357)
..++++
T Consensus 81 ~~~~~~ 86 (219)
T cd01400 81 SHVAIP 86 (219)
T ss_pred ccCCCC
Confidence 555555
No 193
>PRK08359 transcription factor; Validated
Probab=45.84 E-value=19 Score=31.39 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=22.9
Q ss_pred ccccCCcccccccCC---C-ceeeccCCCccchHHHHHHH
Q 041164 8 SKKAGGRLCSTCNQR---K-AALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 8 ~~~~~~~~C~~C~~~---~-a~~~~~~~~~~lC~~cf~~~ 43 (357)
|.+.+.|.|..||.+ + -.+.+.-..+.+|..|...+
T Consensus 1 m~~~~~~~CEiCG~~i~g~~~~v~ieGael~VC~~Ca~k~ 40 (176)
T PRK08359 1 MAKAKPRYCEICGAEIRGPGHRIRIEGAELLVCDRCYEKY 40 (176)
T ss_pred CCCCCcceeecCCCccCCCCeEEEEcCeEEehHHHHHHHh
Confidence 344456789999975 1 22334344578999998544
No 194
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=45.60 E-value=1.2e+02 Score=26.86 Aligned_cols=65 Identities=23% Similarity=0.453 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
...|.+++ +.++++.-+=+|.-.|-||+.|+ +. |++|.++-+ ++..++.+.+++++.+++
T Consensus 19 hs~v~~a~---~~~~~g~~LDlgcG~GRNalyLA----~~------G~~VtAvD~-------s~~al~~l~~~a~~~~l~ 78 (192)
T PF03848_consen 19 HSEVLEAV---PLLKPGKALDLGCGEGRNALYLA----SQ------GFDVTAVDI-------SPVALEKLQRLAEEEGLD 78 (192)
T ss_dssp -HHHHHHC---TTS-SSEEEEES-TTSHHHHHHH----HT------T-EEEEEES-------SHHHHHHHHHHHHHTT-T
T ss_pred cHHHHHHH---hhcCCCcEEEcCCCCcHHHHHHH----HC------CCeEEEEEC-------CHHHHHHHHHHHhhcCce
Confidence 34455544 35677777788999999998865 22 999999843 466788899999999988
Q ss_pred eEEEe
Q 041164 125 LKIVS 129 (357)
Q Consensus 125 ~~iv~ 129 (357)
+....
T Consensus 79 i~~~~ 83 (192)
T PF03848_consen 79 IRTRV 83 (192)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 65553
No 195
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=45.44 E-value=1.9e+02 Score=25.75 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=49.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+|.+||+--.+-. ++....+. .++.++.+|.-|... ..+.++|+++|||+...+..+... ..
T Consensus 1 ki~vl~Sg~Gsn~~a--l~~~~~~~-~l~~~i~~visn~~~--------~~~~~~A~~~gIp~~~~~~~~~~~---~~-- 64 (207)
T PLN02331 1 KLAVFVSGGGSNFRA--IHDACLDG-RVNGDVVVVVTNKPG--------CGGAEYARENGIPVLVYPKTKGEP---DG-- 64 (207)
T ss_pred CEEEEEeCCChhHHH--HHHHHHcC-CCCeEEEEEEEeCCC--------ChHHHHHHHhCCCEEEeccccCCC---cc--
Confidence 588999998655444 33333221 235566666555431 235678999999998765432100 00
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
..-..+.+..++.+.+.|++....-
T Consensus 65 --------------~~~~~~~~~l~~~~~Dliv~agy~~ 89 (207)
T PLN02331 65 --------------LSPDELVDALRGAGVDFVLLAGYLK 89 (207)
T ss_pred --------------cchHHHHHHHHhcCCCEEEEeCcch
Confidence 0011133445667899998876553
No 196
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=44.35 E-value=34 Score=25.80 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=27.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+++|++...+|..|...+.+|..+ |++ +..++-|+
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~------G~~--v~~l~GG~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQM------GWE--VYVLEGGL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHc------CCE--EEEecCcH
Confidence 567888888888898888888665 888 45667775
No 197
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=44.31 E-value=15 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.655 Sum_probs=17.9
Q ss_pred ccccccCCCceee-c-cCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKAALK-R-PKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a~~~-~-~~~~~~lC~~cf~~~ 43 (357)
+|..|+++-..+. . ..+| ++|.+|+-.-
T Consensus 1 ~C~iCg~kigl~~~~k~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDG-YICKDCLKKL 30 (51)
T ss_pred CCCccccccccccceeccCc-cchHHHHHHh
Confidence 4899997432222 1 2445 8999998643
No 198
>PRK07667 uridine kinase; Provisional
Probab=44.19 E-value=62 Score=28.20 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=26.8
Q ss_pred CCEEEEEecCChhH--HHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 61 GERIAIGASGGKDS--TVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 61 ~~kvlVa~SGG~DS--~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
+.+++|+++|+.=| ++++..|.+.... .|.++.+++.|.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~--~~~~~~~i~~Dd 55 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQ--EGIPFHIFHIDD 55 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEEcCc
Confidence 45689999997665 6666666654332 267788888875
No 199
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=44.18 E-value=46 Score=29.31 Aligned_cols=54 Identities=24% Similarity=0.400 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCC
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGI 103 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~ 103 (357)
.+...+.+.|.+ ++++.|++|||.--..+...|.+..+ .+..+ +++.+.+|+-.
T Consensus 8 ~i~~~i~~~i~~------~~~~~i~LsgGstp~~~y~~L~~~~~-~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 8 AIAEAIEEAIAE------RGRAVIALSGGSTPKPLYQELAKLHK-ERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHHHHHHHHH------CSSEEEEE--SCTHHHHHHHHHHHHH-TCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHH------CCCEEEEEcCCHHHHHHHHHHhhhcc-ccCChhHeEEEeCcccc
Confidence 344445555543 35799999999999999988887643 22233 68899999765
No 200
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=43.57 E-value=66 Score=26.37 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
+.++| ++|++|.+-.|..++..+...+++ |..+++++
T Consensus 101 ~~~gD-vli~iS~SG~s~~vi~a~~~Ak~~---G~~vIalT 137 (138)
T PF13580_consen 101 IRPGD-VLIVISNSGNSPNVIEAAEEAKER---GMKVIALT 137 (138)
T ss_dssp --TT--EEEEEESSS-SHHHHHHHHHHHHT---T-EEEEEE
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 45565 778888877778878777776554 78887764
No 201
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=43.50 E-value=1.9e+02 Score=24.53 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=38.2
Q ss_pred CEEEEEecCCh------hHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC--ChhhHHHHHHHHHH--hCCCeEEEeec
Q 041164 62 ERIAIGASGGK------DSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY--RDDSLQTVKRNEIQ--YGLPLKIVSYK 131 (357)
Q Consensus 62 ~kvlVa~SGG~------DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~--~~~~~~~v~~~~~~--lgi~~~iv~~~ 131 (357)
-.+++.++++- ++..++..+.+. |.+...++.+++.... .+.-.++++++++. .++|+.+....
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~------Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDL------GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHc------CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 35667776653 233333333333 7777777766554321 23446677788887 58998887764
Q ss_pred c
Q 041164 132 D 132 (357)
Q Consensus 132 ~ 132 (357)
.
T Consensus 123 ~ 123 (201)
T cd00945 123 R 123 (201)
T ss_pred C
Confidence 3
No 202
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=43.24 E-value=2.6e+02 Score=25.42 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=39.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecC--CCCCCChhh-HH-HHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDE--GISGYRDDS-LQ-TVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~--g~~~~~~~~-~~-~v~~~~~~lgi~~~iv 128 (357)
++..++|+|||..=..++..|.....+.+.. -+++++.+|+ |.....+.+ .. ..+.+++.++++...+
T Consensus 32 ~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l~~~~~~~~~~~ 104 (261)
T PRK00443 32 ERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLDEYVGLPADHPESYRYFMRENFFDHVDIPPENI 104 (261)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCceecCCCCCChHHHHHHHHHHHhccCCCCHHHe
Confidence 4456899999988777777776421111112 3688888884 443322222 22 3456777788765443
No 203
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=43.08 E-value=43 Score=33.11 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=29.2
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+.+|+|++|||....-...+++.+.+. |.+|.++.
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~L~~~---g~~V~vv~ 40 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRRLRKA---GADVRVVM 40 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHHHhC---CCEEEEEE
Confidence 3578999999999888888888888553 77887764
No 204
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=42.95 E-value=22 Score=31.35 Aligned_cols=21 Identities=24% Similarity=0.729 Sum_probs=19.4
Q ss_pred ccccccccccccccccchhhH
Q 041164 290 EQGTCERCGYISSQKWCKACV 310 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~ 310 (357)
....|..||-.+.+++|..|.
T Consensus 53 ~i~~C~~C~~~te~d~C~ICs 73 (198)
T COG0353 53 NIKHCSVCGNLTESDPCDICS 73 (198)
T ss_pred cCccccccCCcCCCCcCcCcC
Confidence 467899999999999999998
No 205
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=42.89 E-value=2.3e+02 Score=27.28 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC
Q 041164 57 LFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~ 104 (357)
++.+||+|||. |-|.=|.-.+++++++ |++|+.|.-|.|..
T Consensus 88 ~lePgd~vLv~-~~G~wg~ra~D~~~r~------ga~V~~v~~~~G~~ 128 (385)
T KOG2862|consen 88 LLEPGDNVLVV-STGTWGQRAADCARRY------GAEVDVVEADIGQA 128 (385)
T ss_pred hcCCCCeEEEE-EechHHHHHHHHHHhh------CceeeEEecCcccC
Confidence 46677777554 4455555556666665 88888888887763
No 206
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=42.51 E-value=3.5e+02 Score=26.80 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=28.3
Q ss_pred EEEEecCChhHHH---HHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecc
Q 041164 64 IAIGASGGKDSTV---LAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKD 132 (357)
Q Consensus 64 vlVa~SGG~DS~~---LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~ 132 (357)
-.|-+|||=|-+. +..+++.+++ .++.+.+. +-.|. ++.+ .+.+.+ ..++|+....++++.
T Consensus 75 ggVtisGGGepl~~~~l~eLl~~lk~---~gi~taI~-~TnG~-~l~~--~e~~~~-L~~~gld~v~iSvka 138 (404)
T TIGR03278 75 TKVTISGGGDVSCYPELEELTKGLSD---LGLPIHLG-YTSGK-GFDD--PEIAEF-LIDNGVREVSFTVFA 138 (404)
T ss_pred CEEEEECCcccccCHHHHHHHHHHHh---CCCCEEEe-CCCCc-ccCC--HHHHHH-HHHcCCCEEEEeccc
Confidence 4579999944432 3334444332 15553221 11221 1211 223333 344677877777753
No 207
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=42.46 E-value=8.7 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.628 Sum_probs=19.3
Q ss_pred cccccccCCCceeeccCCCccchHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFY 41 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~ 41 (357)
..|.+|+ +.++...+...+.|..|=+
T Consensus 20 ~~CPrCG--~gvfmA~H~dR~~CGkCgy 45 (51)
T COG1998 20 RFCPRCG--PGVFMADHKDRWACGKCGY 45 (51)
T ss_pred ccCCCCC--CcchhhhcCceeEeccccc
Confidence 4599999 4556666777889988854
No 208
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=42.29 E-value=2.5e+02 Score=27.81 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCEEEEEecCChhHHH-HHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEee
Q 041164 60 AGERIAIGASGGKDSTV-LAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~-LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
.+.+|+|. |+.|-.. ++.+|.++ |.++..+...+... ...+..+...+..+++..++..
T Consensus 298 ~gk~v~i~--~~~~~~~~l~~~L~e~------G~~v~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~ 357 (428)
T cd01965 298 GGKRVAIA--GDPDLLLGLSRFLLEM------GAEPVAAVTGTDNP----PFEKRMELLASLEGIPAEVVFV 357 (428)
T ss_pred cCCEEEEE--cChHHHHHHHHHHHHc------CCcceEEEEcCCCc----hhHHHHHHhhhhcCCCceEEEC
Confidence 46787655 6666544 44555554 88888777765542 2222223333445566555544
No 209
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=42.20 E-value=17 Score=22.78 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=18.7
Q ss_pred CcccccccCCCceeeccCCCccchHHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
.+.|..|+. . .....+|..+|..|
T Consensus 8 ~~~C~~C~~-~--~~~~~dG~~yC~~c 31 (36)
T PF11781_consen 8 NEPCPVCGS-R--WFYSDDGFYYCDRC 31 (36)
T ss_pred CCcCCCCCC-e--EeEccCCEEEhhhC
Confidence 457999996 3 55667899999877
No 210
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=42.11 E-value=8.2 Score=22.89 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=14.3
Q ss_pred cccccccCCCceeeccCCCccchHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECF 40 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf 40 (357)
-+|.+|++-...+.+......||..|.
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq 28 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQ 28 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCc
Confidence 479999964444444445678887774
No 211
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=41.76 E-value=74 Score=23.45 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEE
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIA 175 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~ 175 (357)
|+++++.++-...+..+++...+ |.+-|+++|++.|+
T Consensus 11 G~ei~yl~iv~~~~~d~d~Al~e-----------------M~e~A~~lGAnAVV 47 (74)
T TIGR03884 11 GLQLYYLGIVSTESDNVDEIVEN-----------------LREKVKAKGGMGLI 47 (74)
T ss_pred CeEEEEEEEEEEecCCHHHHHHH-----------------HHHHHHHcCCCEEE
Confidence 45565555543445566666543 77889999999875
No 212
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=40.94 E-value=1.8e+02 Score=27.10 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=45.0
Q ss_pred CEEEEEecCChhHHHHHHHHHH-HhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSE-LNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~-~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
+.|.|.-||-..|+..+.=+.+ +++... -+.++..+-.|.-- .+.+.+.+.++|++.|.++.-.
T Consensus 143 ~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~---~~~e~~~v~~fa~~~g~~i~~~ 208 (273)
T PF00142_consen 143 QEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRN---VDDEEEIVEDFAERIGTPIIAF 208 (273)
T ss_dssp SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS---STTHHHHHHHHHHHHTSEEEEE
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC---CCCchHHHHHHHHHcCCcEEEe
Confidence 6899999999999988874443 332221 24678888887432 2556788999999999987543
No 213
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=40.87 E-value=3.5e+02 Score=26.78 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEe
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSI 99 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~i 99 (357)
+.++...+.+++..-.|.+++|. .||.++..++.++.++ |.++.++..
T Consensus 284 ~~~~~~~l~~~~~~L~Gkrv~i~-~g~~~~~~~~~~l~el------Gmevv~~g~ 331 (421)
T cd01976 284 KPAMEAVIAKYRPRLEGKTVMLY-VGGLRPRHYIGAYEDL------GMEVVGTGY 331 (421)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEE-CCCCcHHHHHHHHHHC------CCEEEEEEe
Confidence 44566666666544567777755 4677887777888776 999988655
No 214
>PLN02360 probable 6-phosphogluconolactonase
Probab=40.72 E-value=88 Score=28.97 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=25.3
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCC
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGI 103 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~ 103 (357)
+...+.||+|||. ..-++..|.+.....+..+ +++++.+|+-.
T Consensus 40 ~~~~~~lalsGGS-~~~~~~~L~~~~~~~~idW~~v~~f~~DER~ 83 (268)
T PLN02360 40 ERGVFAIALSGGS-LISFMGKLCEAPYNKTVDWAKWYIFWADERV 83 (268)
T ss_pred hCCcEEEEECCCC-HHHHHHHHhccccccCCCCceEEEEeeeccc
Confidence 4567999999995 3444444432211111233 68899999865
No 215
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=40.69 E-value=44 Score=32.95 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
+.+|+|++|||+.+-=.+.+.+.+.+. |.++.++.-..
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~---ga~v~vvmt~~ 41 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRS---GAEVRVVMTES 41 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhC---CCeeEEEcchh
Confidence 458999999999987777777777544 88888876544
No 216
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=40.65 E-value=33 Score=25.87 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=27.6
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
..++++|+|-..+|..|..++..|..+ |++ .+..++.|+
T Consensus 53 ~~~~~~ivv~c~~g~~s~~~~~~l~~~------G~~-~v~~l~GG~ 91 (96)
T cd01529 53 PGRATRYVLTCDGSLLARFAAQELLAL------GGK-PVALLDGGT 91 (96)
T ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHc------CCC-CEEEeCCCH
Confidence 345677888888999998888888665 764 234456665
No 217
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=40.14 E-value=2.4e+02 Score=28.32 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=42.0
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
++++.-|--=|++++.++..+.++ |+++.++..|.. ++...+..+.+++.+|+|++..
T Consensus 99 ~lvG~~GsGKTTtaakLA~~L~~~---g~kV~lV~~D~~----R~aa~eQL~~la~~~gvp~~~~ 156 (437)
T PRK00771 99 MLVGLQGSGKTTTAAKLARYFKKK---GLKVGLVAADTY----RPAAYDQLKQLAEKIGVPFYGD 156 (437)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc---CCeEEEecCCCC----CHHHHHHHHHHHHHcCCcEEec
Confidence 456666666677878888776543 788888888763 3455677888899999997654
No 218
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=39.25 E-value=44 Score=24.83 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~ 104 (357)
+.++++|++-.+.|..|...+..|+++ |+ .+..++-|..
T Consensus 48 ~~~~~~vvl~c~~g~~a~~~a~~L~~~------G~--~v~~l~GG~~ 86 (90)
T cd01524 48 LPKDKEIIVYCAVGLRGYIAARILTQN------GF--KVKNLDGGYK 86 (90)
T ss_pred cCCCCcEEEEcCCChhHHHHHHHHHHC------CC--CEEEecCCHH
Confidence 456677888888888888888887765 77 4566677753
No 219
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=39.00 E-value=2.4e+02 Score=23.92 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCCCCC-Chh-hHHHHHH-HH
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGISGY-RDD-SLQTVKR-NE 118 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~~~~-~~~-~~~~v~~-~~ 118 (357)
.+...+...+. .++.+.|++|||.-=..++..|.+..... .+ ++.+++.|+-.-.. +++ ....+++ +.
T Consensus 7 ~i~~~i~~~~~------~~~~~~i~lsgGsTp~~~y~~L~~~~~~~--~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll 78 (169)
T cd00458 7 FIEDKXEKLLE------EKDDMVIGLGTGSTPAYFYKLLGEKLKRG--EISDIVGFPTDERYVPLDSDQSNFRQAKLLAF 78 (169)
T ss_pred HHHHHHHHHHH------hCCCEEEEECCCccHHHHHHHHHhhhhhC--CccceEEEECccccCCCCCchHHHHHHHHHhh
Confidence 34444444443 34578999999988888887776542221 22 68888899754322 222 2334444 34
Q ss_pred HHhCCCeE
Q 041164 119 IQYGLPLK 126 (357)
Q Consensus 119 ~~lgi~~~ 126 (357)
+..++|-.
T Consensus 79 ~~~~i~~~ 86 (169)
T cd00458 79 EHDIIPAS 86 (169)
T ss_pred ccCCCCHH
Confidence 44555543
No 220
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.77 E-value=2.5e+02 Score=28.18 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=39.3
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
+++.+|--=|+++..++..+... .|.++.++..|.. +....+.++.+++.+|+|+...
T Consensus 228 lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~----R~aA~eQLk~yAe~lgvp~~~~ 285 (432)
T PRK12724 228 FVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNY----RIAAIEQLKRYADTMGMPFYPV 285 (432)
T ss_pred EECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccch----hhhHHHHHHHHHHhcCCCeeeh
Confidence 45556655667777777654222 2678888888763 3444667888999999988653
No 221
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=38.59 E-value=60 Score=28.53 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.1
Q ss_pred EEEEEecCChhHHHHH-HHHHHHhhhCCCCeeEEEEEecC
Q 041164 63 RIAIGASGGKDSTVLA-FVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL-~ll~~~~~~~~~g~~v~av~id~ 101 (357)
+|++++||+.-+.... .+++.+.+. |.+|.++.=+.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~---g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE---GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC---cCEEEEEEchh
Confidence 7999999998888885 888887543 78888775443
No 222
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.59 E-value=54 Score=33.25 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=29.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
+.+|+++++||.-..-.+.+++.+.+. |.+|.++.
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k~---G~~V~Vvm 104 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKER---GAHVRCVL 104 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHhC---cCEEEEEE
Confidence 578999999999999999999988653 78887775
No 223
>PRK06696 uridine kinase; Validated
Probab=38.35 E-value=1e+02 Score=27.37 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCCEEEEEecCChhH--HHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 60 AGERIAIGASGGKDS--TVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS--~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
.+.+.+|++||+.-| ++++..|.+.... .|..+..++.|.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~--~g~~v~~~~~Dd 60 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK--RGRPVIRASIDD 60 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecccc
Confidence 456899999997665 6666666654332 256666666764
No 224
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=38.32 E-value=3e+02 Score=24.84 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=29.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
..++.+++|||..-..+...|.+.......=-+++++++|+
T Consensus 27 ~~~~~l~lsgG~tp~~~y~~L~~~~~~~~~w~~v~~f~~DE 67 (239)
T PRK12358 27 TKRVNLAITAGSTPKGMYEYLITLVKGKAWYDNVHYYNFDE 67 (239)
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcCCCHHHcEEEeccc
Confidence 34789999999999888888886522211112688888998
No 225
>PF13941 MutL: MutL protein
Probab=38.31 E-value=1.5e+02 Score=29.99 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=37.1
Q ss_pred EEEecCChhH---HHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 65 AIGASGGKDS---TVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 65 lVa~SGG~DS---~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
+|.++||.|. -++++.++.+.+- ++++.+|+. |- ....+.++++.++-|.++++++
T Consensus 127 iILLaGGtDgG~~~~il~nA~~La~~---~~~~pVIyA--GN----~~a~~~v~~il~~~~~~~~~~~ 185 (457)
T PF13941_consen 127 IILLAGGTDGGNKEVILHNAEMLAEA---NLRIPVIYA--GN----KAAQDEVEEILEKAGKEVVITE 185 (457)
T ss_pred EEEEeCCccCCchHHHHHHHHHHHhC---CCCCcEEEE--CC----HHHHHHHHHHHHhCCCCEEEeC
Confidence 4566999887 6677766655422 444444433 32 4446778888888899999987
No 226
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=37.25 E-value=1.7e+02 Score=28.04 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHH
Q 041164 40 FYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEI 119 (357)
Q Consensus 40 f~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~ 119 (357)
..+.||++|.+.+. .+-+|++|.|-+.+.++..+..+. .|-+|.+= ...+ -.+-.-..
T Consensus 26 ~~~~fE~~~a~~~g--------~~~~~~~~sgt~Al~~al~~l~~~----~gdeVi~p--~~t~--------~~~~~ai~ 83 (363)
T PF01041_consen 26 YVEEFEKEFAEYFG--------VKYAVAVSSGTSALHLALRALGLG----PGDEVIVP--AYTF--------PATASAIL 83 (363)
T ss_dssp HHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHTTGG----TTSEEEEE--SSS---------THHHHHHH
T ss_pred HHHHHHHHHHHHhC--------CCeEEEeCChhHHHHHHHHhcCCC----cCceEecC--CCcc--------hHHHHHHH
Confidence 34556666666553 356788888866665555554432 24444331 2222 12334466
Q ss_pred HhCCCeEEEeec-cccCCCHHHHHHHhCCCC----C-chhHHHHHHHHHHHHHHHCCCCEEE
Q 041164 120 QYGLPLKIVSYK-DLYGWTMDEIVKVIGLKN----N-CTFCGVFRRQALDRGASLLKVDKIA 175 (357)
Q Consensus 120 ~lgi~~~iv~~~-~~~~~~i~~~~~~~~~~~----~-c~~c~~~r~~~l~~~A~~~g~~~I~ 175 (357)
..|.....+|++ +.+..+.+.+.+...... + -.+........+.++|+++|.-.|-
T Consensus 84 ~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIe 145 (363)
T PF01041_consen 84 WAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHLFGNPADMDAIRAIARKHGIPLIE 145 (363)
T ss_dssp HTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-EEEE
T ss_pred HhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecCCCCcccHHHHHHHHHHcCCcEEE
Confidence 789999999998 556677776665421110 1 1111223567788899999887773
No 227
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.20 E-value=2.1e+02 Score=28.32 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=40.3
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
++++-+|--=|++++.+...+..+ |.++.++..|.. +....+..+.+++.+|+|+++.
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDty----R~gAveQLk~yae~lgvpv~~~ 267 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTF----RSGAVEQFQGYADKLDVELIVA 267 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCcc----CccHHHHHHHHhhcCCCCEEec
Confidence 455666666677777777665433 678888888854 3334567788899999998764
No 228
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=36.51 E-value=2.9e+02 Score=24.03 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHCCCCEEEcCCChhHHHHHH
Q 041164 157 FRRQALDRGASLLKVDKIATGHNADDIAETV 187 (357)
Q Consensus 157 ~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~ 187 (357)
.....+..+|+.+|...|+.|-.-.+..+.+
T Consensus 190 ~~l~~l~~~~~~~~~~via~gVe~~~~~~~l 220 (236)
T PF00563_consen 190 SLLQSLINLAKSLGIKVIAEGVESEEQLELL 220 (236)
T ss_dssp HHHHHHHHHHHHTT-EEEEECE-SHHHHHHH
T ss_pred HHHHHHHHHhhccccccceeecCCHHHHHHH
Confidence 4456788999999999999999777766543
No 229
>PLN02565 cysteine synthase
Probab=36.23 E-value=3.1e+02 Score=26.08 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=44.7
Q ss_pred cCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 55 NQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 55 ~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
...+.++.+.+|..|+|-=...|++..+.+ |+++++ ++..+. + ..-.+..+.+|-+++.++
T Consensus 60 ~g~~~~g~~~vv~aSsGN~g~alA~~a~~~------G~~~~i-vvp~~~---~----~~k~~~i~~~GA~V~~~~ 120 (322)
T PLN02565 60 KGLIKPGESVLIEPTSGNTGIGLAFMAAAK------GYKLII-TMPASM---S----LERRIILLAFGAELVLTD 120 (322)
T ss_pred cCCCCCCCcEEEEECCChHHHHHHHHHHHc------CCeEEE-EeCCCC---c----HHHHHHHHHcCCEEEEeC
Confidence 445567767789999999999999999987 888874 455443 1 223556788998887764
No 230
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=36.12 E-value=21 Score=34.71 Aligned_cols=28 Identities=25% Similarity=0.750 Sum_probs=20.7
Q ss_pred ccCCcccccccCCCceeeccCCCccchHHHHHH
Q 041164 10 KAGGRLCSTCNQRKAALKRPKTLEQICRECFYE 42 (357)
Q Consensus 10 ~~~~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~ 42 (357)
...+|.|-+|+.+.. .....+|..||.+
T Consensus 3 ~~~~~~C~~CGr~~~-----~~~~~lC~dC~~~ 30 (355)
T COG1499 3 DASTILCVRCGRSVD-----PLIDGLCGDCYVE 30 (355)
T ss_pred CCcccEeccCCCcCc-----hhhccccHHHHhc
Confidence 445789999997432 2356899999976
No 231
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.09 E-value=96 Score=29.26 Aligned_cols=31 Identities=26% Similarity=0.142 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEcCCChhHHHH
Q 041164 155 GVFRRQALDRGASLLKVDKIATGHNADDIAE 185 (357)
Q Consensus 155 ~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ae 185 (357)
+.-.+.++.++.++.+++.+.|-|..+|++.
T Consensus 192 q~~ir~Flke~n~~~~aTVllTTH~~~di~~ 222 (325)
T COG4586 192 QANIREFLKEYNEERQATVLLTTHIFDDIAT 222 (325)
T ss_pred HHHHHHHHHHHHHhhCceEEEEecchhhHHH
Confidence 3456788999999999999999999999874
No 232
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=36.03 E-value=25 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=19.0
Q ss_pred ccccccCCCceeeccCC-----CccchHHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKT-----LEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~-----~~~lC~~cf~~~~ 44 (357)
.|..|+. .++...|+. +--||.+||....
T Consensus 2 ~Cd~C~~-~pi~g~RykC~~C~d~DLC~~Cf~~g~ 35 (49)
T cd02334 2 KCNICKE-FPITGFRYRCLKCFNYDLCQSCFFSGR 35 (49)
T ss_pred CCCCCCC-CCceeeeEECCCCCCcCchHHHHhCCC
Confidence 4777774 455555543 4569999997653
No 233
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=35.75 E-value=2.2e+02 Score=26.29 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=44.7
Q ss_pred CEEEEEecCChhHHHHHHHHH-HHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLS-ELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~-~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
+-|.|.-||+..|+..+.=+. -+++..+ -+.++-.+..|... .+.+.+.+.++|+.+|-++...
T Consensus 144 deiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~---~~~e~e~v~~fa~~igt~li~~ 209 (278)
T COG1348 144 DEIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRS---VDRERELVEAFAERLGTQLIHF 209 (278)
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCC---cccHHHHHHHHHHHhCCceEee
Confidence 679999999999999997444 3322221 35667766655432 2455789999999999887543
No 234
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.64 E-value=69 Score=27.50 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.1
Q ss_pred CCcCCHHHHHHHHHHHcCCcccccCC
Q 041164 219 FKYTYEKEIMFTYAYFKRLDYFSTEC 244 (357)
Q Consensus 219 L~~~~k~EI~~~ya~~~~i~~~~~~~ 244 (357)
.+.+++.+... .|...||||+++..
T Consensus 139 ~R~Vs~~qa~~-La~kyglPYfETSA 163 (219)
T KOG0081|consen 139 QRVVSEDQAAA-LADKYGLPYFETSA 163 (219)
T ss_pred hhhhhHHHHHH-HHHHhCCCeeeecc
Confidence 34578899999 99999999998873
No 235
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=35.04 E-value=4.6e+02 Score=26.35 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHH-HHhhhCCCCeeEEEEEecCC
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLS-ELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~-~~~~~~~~g~~v~av~id~g 102 (357)
++...+..++..-.|.||+| +.||.....+..+|. ++ |.++.++....+
T Consensus 311 ~~~~~ld~~~~~L~GkrvaI-~~~~~~~~~l~~~l~~El------Gmevv~~~~~~~ 360 (457)
T TIGR01284 311 KWKPELDWYKERLRGKKVWV-WSGGPKLWHWPRPLEDEL------GMEVVAVSTKFG 360 (457)
T ss_pred HHHHHHHHHHHHcCCCEEEE-ECCCcHHHHHHHHHHHhC------CCEEEEEEEEeC
Confidence 34444554533335778866 556656666666665 45 999888755443
No 236
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=35.04 E-value=17 Score=25.00 Aligned_cols=30 Identities=33% Similarity=0.723 Sum_probs=22.3
Q ss_pred CcccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
...|..|.+ .--++++| |...|+.||.++.
T Consensus 18 srsC~vCsn-~~gLIrKY-GL~vcr~cfr~~a 47 (56)
T KOG3506|consen 18 SRSCRVCSN-RHGLIRKY-GLNVCRQCFREYA 47 (56)
T ss_pred Ccceeeecc-chhHHHHh-hhHHhHHHHHhhc
Confidence 346999996 55555544 8999999998763
No 237
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=34.95 E-value=4.4e+02 Score=25.69 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=75.7
Q ss_pred CCCEEEEEecCC-hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCCh---hhHHHHHHHHHHhCCCeEEEeeccccC
Q 041164 60 AGERIAIGASGG-KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRD---DSLQTVKRNEIQYGLPLKIVSYKDLYG 135 (357)
Q Consensus 60 ~~~kvlVa~SGG-~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~---~~~~~v~~~~~~lgi~~~iv~~~~~~~ 135 (357)
++++.-|.++|+ .|+..++.++.+. |..|++--.-.|.+.+.. +..+-+..+|+++
T Consensus 226 ~~~~~ril~tG~~~~~~~i~~~iE~~------G~~VV~~e~c~g~r~~~~~v~~~~dpl~alA~~y-------------- 285 (377)
T TIGR03190 226 RKTGARFMTIGSENDDIAFMAMVESV------GATIVIDDQCSGTRYFWNASKPEDDVIKAIAERY-------------- 285 (377)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHC------CCEEEEECCCcccccccccCCCCccHHHHHHHHh--------------
Confidence 456677888887 5666666677665 666655433345443211 1111223333333
Q ss_pred CCHHHHHHHhCCCCCchh---HHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCC
Q 041164 136 WTMDEIVKVIGLKNNCTF---CGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGP 212 (357)
Q Consensus 136 ~~i~~~~~~~~~~~~c~~---c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~ 212 (357)
....+|+. -..-|...+.+.+++.+++-|+.-.+. +
T Consensus 286 ----------l~~~~C~~~~~p~~~R~~~i~~lv~~~~~DGVI~~~~k-------------f------------------ 324 (377)
T TIGR03190 286 ----------CDRPACPTKDYPVHTRYDHVLGLAKEYNVQGAIFLQQK-------------F------------------ 324 (377)
T ss_pred ----------cCCCCCCCcCCCHHHHHHHHHHHHHHhCCCEEEEeccc-------------C------------------
Confidence 11122221 123577889999999999887763211 1
Q ss_pred ccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCC--hhhHHHHHHHHHHHHH
Q 041164 213 IPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSP--NAYRGFAREFIKDLER 264 (357)
Q Consensus 213 i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~--~~~r~~ir~~l~~Le~ 264 (357)
..|.. +.-..|.. +.+..|||+..-++.|+. +-++.++..|+..|++
T Consensus 325 ---C~~~~-~e~~~lk~-~l~e~GIP~L~iE~D~~~~~gQi~TRlEAFlEml~~ 373 (377)
T TIGR03190 325 ---CDPHE-GDYPDLKR-HLEANGIPTLFLEFDITNPIGPFRIRIEAFLETLSE 373 (377)
T ss_pred ---CCcch-hhhHHHHH-HHHHCCCCEEEEecCCCCchHHHHHHHHHHHHHHhh
Confidence 11211 23345666 777889998765544443 3445555567777754
No 238
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=34.84 E-value=1.1e+02 Score=23.52 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=23.3
Q ss_pred EEEEEecCChhHHHH-HHHHHHHhhhCCCCeeEEEEEe
Q 041164 63 RIAIGASGGKDSTVL-AFVLSELNRRHNYGLDLFLLSI 99 (357)
Q Consensus 63 kvlVa~SGG~DS~~L-L~ll~~~~~~~~~g~~v~av~i 99 (357)
+|+++...|.-|+.+ +.-+++..+.. |+++.+.+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~--gi~~~v~~~ 39 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQC 39 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHC--CCeEEEEEe
Confidence 699999999977666 46666654443 555554443
No 239
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=34.79 E-value=2.1e+02 Score=22.04 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred CCCEEEEEecCC---hhHHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 60 AGERIAIGASGG---KDSTVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 60 ~~~kvlVa~SGG---~DS~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
.++.++|.+..+ ..+...+.-+.++.++++ .++++.+|+.|. .+.++++.+..++++.++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~---------~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD---------PEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS---------HHHHHHHHHHHTCSSEEEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc---------ccchhhhhhhhcccccccc
Confidence 456777777777 333333444444433322 367777776532 2357888888888877764
No 240
>PRK08227 autoinducer 2 aldolase; Validated
Probab=34.72 E-value=3.8e+02 Score=24.91 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=57.1
Q ss_pred CEEEEEecCC------hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhh---HHHHHHHHHHhCCCeEEEeecc
Q 041164 62 ERIAIGASGG------KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDS---LQTVKRNEIQYGLPLKIVSYKD 132 (357)
Q Consensus 62 ~kvlVa~SGG------~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~---~~~v~~~~~~lgi~~~iv~~~~ 132 (357)
..++|=+||| .+...++.-..+.- ++|-+-+.+|++.|-.. ..+. +..+.+-|+++|+|+..+...
T Consensus 75 ~~lil~ls~~t~~~~~~~~~~l~~sVeeAv---rlGAdAV~~~v~~Gs~~-E~~~l~~l~~v~~ea~~~G~Plla~~pr- 149 (264)
T PRK08227 75 KPVVLRASGGNSILKELSNEAVAVDMEDAV---RLNACAVAAQVFIGSEY-EHQSIKNIIQLVDAGLRYGMPVMAVTAV- 149 (264)
T ss_pred CcEEEEEcCCCCCCCCCCcccceecHHHHH---HCCCCEEEEEEecCCHH-HHHHHHHHHHHHHHHHHhCCcEEEEecC-
Confidence 4588899986 22222332222221 24788899999999432 2222 334556789999998874211
Q ss_pred ccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 133 LYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 133 ~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
|..+.+- .-......++|.++|+|.|=|--..
T Consensus 150 --G~~~~~~--------------~~~ia~aaRiaaELGADiVK~~y~~ 181 (264)
T PRK08227 150 --GKDMVRD--------------ARYFSLATRIAAEMGAQIIKTYYVE 181 (264)
T ss_pred --CCCcCch--------------HHHHHHHHHHHHHHcCCEEecCCCH
Confidence 2111110 0123446788999999999877664
No 241
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=34.22 E-value=99 Score=19.31 Aligned_cols=22 Identities=0% Similarity=-0.100 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHcCCcccccC
Q 041164 221 YTYEKEIMFTYAYFKRLDYFSTE 243 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~~~ 243 (357)
.|+..++.. |...+||++....
T Consensus 3 tWs~~~L~~-wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKS-WLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHH-HHHHcCCCCCCCC
Confidence 588999999 9999999874443
No 242
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=34.02 E-value=3.8e+02 Score=26.01 Aligned_cols=65 Identities=26% Similarity=0.468 Sum_probs=39.6
Q ss_pred CCCCCEEEE-EecCChhHHHHHHHHHHHhhhCC-CCeeE----EEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 58 FKAGERIAI-GASGGKDSTVLAFVLSELNRRHN-YGLDL----FLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 58 ~~~~~kvlV-a~SGG~DS~~LL~ll~~~~~~~~-~g~~v----~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
+..+-.++| +-||---|+.+|++...+....+ +|+.+ .+++|+--. ++++-++..+.++..+|++
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl--~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLEL--YREDILERLEPVRARMGLS 156 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEecc--ChHHHHHHHHHHHHHcCCC
Confidence 344555566 78887788888887665422111 23222 344454333 4566678888999999984
No 243
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=33.73 E-value=45 Score=21.04 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.1
Q ss_pred CcccccccCCCceeeccCCCccchHHHHHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICRECFYE 42 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~ 42 (357)
+..|..|...++.++=..-+..+|..|+..
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCC
Confidence 356999997558888778889999999864
No 244
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=33.71 E-value=3.6e+02 Score=24.31 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC--ChhhHHHHHHHHH---Hh
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY--RDDSLQTVKRNEI---QY 121 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~--~~~~~~~v~~~~~---~l 121 (357)
++.+.|++. |-++.||+.=+-+=-.+.+++... --|.+++|+.|+.|. .+...+.++++.+ +.
T Consensus 101 ~~l~~Ir~~-----g~k~GlalnP~T~~~~i~~~l~~v-------D~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~ 168 (223)
T PRK08745 101 RTIQLIKSH-----GCQAGLVLNPATPVDILDWVLPEL-------DLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDAL 168 (223)
T ss_pred HHHHHHHHC-----CCceeEEeCCCCCHHHHHHHHhhc-------CEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhc
Confidence 444556654 447888888876655566666654 257888999998763 3444555554443 34
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCC
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh 178 (357)
+.++. +.+ .-|.+.+.+. ...+.|++.++.|-
T Consensus 169 ~~~~~-IeV--DGGI~~eti~----------------------~l~~aGaDi~V~GS 200 (223)
T PRK08745 169 GKPIR-LEI--DGGVKADNIG----------------------AIAAAGADTFVAGS 200 (223)
T ss_pred CCCee-EEE--ECCCCHHHHH----------------------HHHHcCCCEEEECh
Confidence 44422 222 2345544442 23456999999884
No 245
>PRK06852 aldolase; Validated
Probab=33.35 E-value=2.9e+02 Score=26.28 Aligned_cols=102 Identities=13% Similarity=0.042 Sum_probs=55.5
Q ss_pred CEEEEEecCC----------hhHHHHHHHHHHHhhh---CCCCeeEEEEEecCCCCCCChhhH---HHHHHHHHHhCCCe
Q 041164 62 ERIAIGASGG----------KDSTVLAFVLSELNRR---HNYGLDLFLLSIDEGISGYRDDSL---QTVKRNEIQYGLPL 125 (357)
Q Consensus 62 ~kvlVa~SGG----------~DS~~LL~ll~~~~~~---~~~g~~v~av~id~g~~~~~~~~~---~~v~~~~~~lgi~~ 125 (357)
-.++|=+||+ .+| .++.-..+..+- ...|..-+.+||+.|-. +..+.+ ..+.+-|+++|+|+
T Consensus 93 ~~lIlkl~~~t~l~~~~~~~p~~-~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~-~E~~ml~~l~~v~~ea~~~GlPl 170 (304)
T PRK06852 93 VPYLVKLNSKTNLVKTSQRDPLS-RQLLDVEQVVEFKENSGLNILGVGYTIYLGSE-YESEMLSEAAQIIYEAHKHGLIA 170 (304)
T ss_pred CcEEEEECCCCCcCCcccCCccc-cceecHHHHHhcCCccCCCceEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhCCcE
Confidence 4588899985 334 333323332110 01236678889998842 222223 34456688999998
Q ss_pred EEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCC
Q 041164 126 KIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHN 179 (357)
Q Consensus 126 ~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~ 179 (357)
...-+.. |..+.+ ...| -......++|.++|++.|=+--.
T Consensus 171 l~~~ypr--G~~i~~------~~~~------~~ia~aaRiaaELGADIVKv~y~ 210 (304)
T PRK06852 171 VLWIYPR--GKAVKD------EKDP------HLIAGAAGVAACLGADFVKVNYP 210 (304)
T ss_pred EEEeecc--CcccCC------CccH------HHHHHHHHHHHHHcCCEEEecCC
Confidence 7744321 211100 0000 12233458999999998877665
No 246
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=33.21 E-value=64 Score=28.70 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=34.9
Q ss_pred CeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc
Q 041164 91 GLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 91 g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
+-+|.++-||+++ +..+-.++.+++|...|.++.+.-+...|
T Consensus 102 ~~~vdVigIDEaQ--Ff~dl~efc~evAd~~Gk~VivagLdgdF 143 (234)
T KOG3125|consen 102 NGDVDVIGIDEAQ--FFGDLYEFCREVADVHGKTVIVAGLDGDF 143 (234)
T ss_pred cCcceEEEecHHH--HhHHHHHHHHHHHhccCCEEEEEecCCch
Confidence 4578999999998 45566899999999999999999886554
No 247
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=33.21 E-value=54 Score=23.27 Aligned_cols=26 Identities=31% Similarity=0.743 Sum_probs=19.1
Q ss_pred ccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
.|..|+. +-.++..+ .+|+-||-+..
T Consensus 23 RC~~tGR-~rgvir~f---gl~R~~FRe~A 48 (61)
T PRK08061 23 RCERCGR-PHSVYRKF---GLCRICFRELA 48 (61)
T ss_pred eeecCCC-CcceeccC---CccHHHHHHHH
Confidence 6999996 65566555 39999996543
No 248
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=32.78 E-value=29 Score=22.82 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=17.7
Q ss_pred CcccccccCCCceeeccCC-----CccchHHHHHH
Q 041164 13 GRLCSTCNQRKAALKRPKT-----LEQICRECFYE 42 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~-----~~~lC~~cf~~ 42 (357)
...|..|+. ..+...++. .--||..||..
T Consensus 4 ~~~C~~C~~-~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGT-DPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-S-SSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CeECcCCCC-CcCcCCeEECCCCCCCchhhHHHhC
Confidence 456888985 455555543 45699999976
No 249
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.51 E-value=22 Score=25.04 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=14.9
Q ss_pred ccccccccccc--cccch-hhHH
Q 041164 292 GTCERCGYISS--QKWCK-ACVL 311 (357)
Q Consensus 292 ~~C~~Cg~p~~--~~~c~-~c~~ 311 (357)
..|..||.|-. ...|+ .|+-
T Consensus 4 kHC~~CG~~Ip~~~~fCS~~C~~ 26 (59)
T PF09889_consen 4 KHCPVCGKPIPPDESFCSPKCRE 26 (59)
T ss_pred CcCCcCCCcCCcchhhhCHHHHH
Confidence 57999999854 55785 7773
No 250
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=32.42 E-value=4.2e+02 Score=25.51 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=54.2
Q ss_pred HHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 49 HQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 49 ~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
.+.+++ ..+.-+|+|-+.+|-|....-+++..+... +..|++..++.-....+.-..-...+..+++++|-|+.|+
T Consensus 160 ~~AVr~---~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~-g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~ 235 (332)
T PF07745_consen 160 IKAVRE---VDPNIKVMLHLANGGDNDLYRWFFDNLKAA-GVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVV 235 (332)
T ss_dssp HHHHHT---HSSTSEEEEEES-TTSHHHHHHHHHHHHHT-TGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHHHh---cCCCCcEEEEECCCCchHHHHHHHHHHHhc-CCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEE
Confidence 344544 567789999999999998888888877554 3578888888865554433333556778899999999999
Q ss_pred eec
Q 041164 129 SYK 131 (357)
Q Consensus 129 ~~~ 131 (357)
...
T Consensus 236 Et~ 238 (332)
T PF07745_consen 236 ETG 238 (332)
T ss_dssp EE-
T ss_pred ecc
Confidence 875
No 251
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=32.36 E-value=1.1e+02 Score=25.07 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCCh-------hHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGK-------DSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTV 114 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~-------DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v 114 (357)
.....++..+++-+ +.+..-.|.+|||. .+.++..++.+. |+....++++..-. ...++..++
T Consensus 17 ~~~~~R~~~a~~l~---~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~------gv~~~~I~~e~~s~-~T~ena~~~ 86 (150)
T cd06259 17 PILAERLDAAAELY---RAGPAPKLIVSGGQGPGEGYSEAEAMARYLIEL------GVPAEAILLEDRST-NTYENARFS 86 (150)
T ss_pred hHHHHHHHHHHHHH---HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHc------CCCHHHeeecCCCC-CHHHHHHHH
Confidence 44556666666644 33333446669996 556777677665 55444455554432 245667788
Q ss_pred HHHHHHhCCCeE
Q 041164 115 KRNEIQYGLPLK 126 (357)
Q Consensus 115 ~~~~~~lgi~~~ 126 (357)
.++..+.|+.-.
T Consensus 87 ~~~~~~~~~~~i 98 (150)
T cd06259 87 AELLRERGIRSV 98 (150)
T ss_pred HHHHHhcCCCeE
Confidence 888888887433
No 252
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=32.17 E-value=53 Score=24.98 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=27.2
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
.++.+|+|-..+|.-|..++.+|..+ |++ .+..++-|+
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~------G~~-~v~~l~GG~ 96 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKER------GFK-NVYQLKGGI 96 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHh------CCc-ceeeechhH
Confidence 45667888888899998888888765 774 233456665
No 253
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=32.17 E-value=81 Score=28.58 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=25.5
Q ss_pred EEEEEecCChhHH-HHHHHHHHHhhhCCCCeeEEEEE
Q 041164 63 RIAIGASGGKDST-VLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 63 kvlVa~SGG~DS~-~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
||++++||+-.++ -.+.+++.+.+.++ |.+|.++.
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~-g~~V~vv~ 36 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIE-ELRVSTFV 36 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcC-CCeEEEEE
Confidence 5899999987774 77778887755321 67787775
No 254
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=32.07 E-value=3.9e+02 Score=24.79 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=40.1
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
++++-+|--=|+++..++..+..+. .+.+|.++..|.. +....+.+..+++.+|+|+.+.
T Consensus 198 ~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~----r~~a~eql~~~~~~~~~p~~~~ 257 (282)
T TIGR03499 198 ALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTY----RIGAVEQLKTYAKILGVPVKVA 257 (282)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCcc----chhHHHHHHHHHHHhCCceecc
Confidence 4556666566677777777664331 1378888988853 3344667788899999998765
No 255
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=31.89 E-value=2.1e+02 Score=21.05 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHhhhCC--CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 72 KDSTVLAFVLSELNRRHN--YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 72 ~DS~~LL~ll~~~~~~~~--~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
..|...+-.|.++.++++ .+++++.|++|. +.+..+++.++++.++..+.+.
T Consensus 14 ~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~--------~~~~~~~~~~~~~~~~~~~~~~ 67 (95)
T PF13905_consen 14 PPCKKELPKLKELYKKYKKKDDVEFVFVSLDE--------DEEEWKKFLKKNNFPWYNVPFD 67 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS--------SHHHHHHHHHTCTTSSEEEETT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC--------CHHHHHHHHHhcCCCceEEeeC
Confidence 455666666666655544 466666666642 1334566666666676666543
No 256
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=31.75 E-value=5.3e+02 Score=25.69 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=53.5
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC--CC--CCCChhhHHHHHHHHHHhCCCe--EEEeeccccCC-
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE--GI--SGYRDDSLQTVKRNEIQYGLPL--KIVSYKDLYGW- 136 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~--g~--~~~~~~~~~~v~~~~~~lgi~~--~iv~~~~~~~~- 136 (357)
.-|.++||.+.++. -+.++ |.+...++.-. ++ ...+++..+..++.++++|+.. .+++..-..+.
T Consensus 135 aHvSiaGG~~~a~~--~a~~~------g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLA 206 (413)
T PTZ00372 135 AHVSASGGVDNSPI--NAYNI------AGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLA 206 (413)
T ss_pred EEEeccccHHHHHH--HHHHc------CCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCC
Confidence 45678999887432 22222 66666666532 22 2235677888899999998763 33332211111
Q ss_pred CHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEc--CCC
Q 041164 137 TMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIAT--GHN 179 (357)
Q Consensus 137 ~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~t--Gh~ 179 (357)
+.++-.++. ..-.+.--.+.|.++|+.+|++ |++
T Consensus 207 Spd~e~rek---------Sv~~~~~eL~rA~~LGa~~VV~HPGs~ 242 (413)
T PTZ00372 207 NPDKEKREK---------SYDAFLDDLQRCEQLGIKLYNFHPGST 242 (413)
T ss_pred CCCHHHHHH---------HHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 111111110 1122334457788999998885 554
No 257
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=31.72 E-value=4.3e+02 Score=24.63 Aligned_cols=131 Identities=13% Similarity=0.087 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHh--hhC-----CCCeeEEEEEecCCCCCCChhhHHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELN--RRH-----NYGLDLFLLSIDEGISGYRDDSLQTV 114 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~--~~~-----~~g~~v~av~id~g~~~~~~~~~~~v 114 (357)
..+++++.+.+.+.--....+.-++..+||..+..++..+.... .+. ..+-+..++.-+.. ....
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------h~~~ 108 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQA--------HVSV 108 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcc--------hhHH
Confidence 45666666666543112212223567899999987665444221 100 01112233322211 1123
Q ss_pred HHHHHHhCCCeEEEeeccccCCCHHHHHHHhC-------CC------CCchhHH-HHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 115 KRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIG-------LK------NNCTFCG-VFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 115 ~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~-------~~------~~c~~c~-~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
.+.+..+|.++..++.++.....++.+.+... .+ .+-...+ ..-...+.++|+++|+-.++-|.+.
T Consensus 109 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~ 188 (345)
T cd06450 109 EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYG 188 (345)
T ss_pred HHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhh
Confidence 34556678999888876555555555543211 11 0111111 1234566777888777666665543
No 258
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=31.47 E-value=83 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=27.8
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++++|++...+|.-|..++..|.++ |+. .+..++.|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~------g~~-~v~~l~gG~ 89 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAI------SAG-EAYVLEGGL 89 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHc------CCc-cEEEeeCCH
Confidence 445668888889998888888888876 664 344456665
No 259
>PRK05439 pantothenate kinase; Provisional
Probab=31.41 E-value=79 Score=30.16 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCCEEEEEecCChhH--HHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 60 AGERIAIGASGGKDS--TVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS--~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
.+.+++|+++||.-| ++++..|..+..+...+.++.++++|.=
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 456799999998765 5556666655433323567888888753
No 260
>PLN02428 lipoic acid synthase
Probab=31.40 E-value=2.6e+02 Score=27.21 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHCCCCEEEcCC
Q 041164 157 FRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 157 ~r~~~l~~~A~~~g~~~I~tGh 178 (357)
-.+..+.++|.+.|+.+|+-|-
T Consensus 301 ~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 301 EKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred HHHHHHHHHHHHcCCceEEecC
Confidence 4567788999999999999885
No 261
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=31.11 E-value=2.7e+02 Score=29.56 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCC
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGI 103 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~ 103 (357)
...+-..+...|++. +..+..+.+++|||..=.-+...|.+..+..++.+ +|+++.+|+-.
T Consensus 40 a~~vA~~I~~~I~~~--~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~w~~V~~F~~DEr~ 101 (652)
T PRK02122 40 SRAVAQEIATLIRER--QAEGKPCVLGLATGSSPIGVYAELIRMHREEGLSFKNVITFNLDEYY 101 (652)
T ss_pred HHHHHHHHHHHHHHH--HHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCCCchheEEEeCeecc
Confidence 344445555555542 34567899999999998888888876533322333 57777777654
No 262
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=31.11 E-value=32 Score=23.03 Aligned_cols=29 Identities=17% Similarity=0.466 Sum_probs=18.0
Q ss_pred ccccccCCCceeeccCC-----CccchHHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKT-----LEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~-----~~~lC~~cf~~~~ 44 (357)
.|..|+. ..+...++. +--||.+||....
T Consensus 2 ~C~~C~~-~~i~g~R~~C~~C~d~dlC~~Cf~~~~ 35 (49)
T cd02338 2 SCDGCGK-SNFTGRRYKCLICYDYDLCADCYDSGV 35 (49)
T ss_pred CCCCCcC-CCcEEeeEEeCCCCCCccchhHHhCCC
Confidence 4777774 334444443 4579999998553
No 263
>PF12251 zf-SNAP50_C: snRNA-activating protein of 50kDa MW C terminal; InterPro: IPR022042 This domain family is found in eukaryotes, and is typically between 196 and 207 amino acids in length. There is a conserved CEH sequence motif. SNAP50 is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.
Probab=30.90 E-value=54 Score=29.01 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=23.5
Q ss_pred CcccccccCCCceeec------cCCCccchHHHHHHH
Q 041164 13 GRLCSTCNQRKAALKR------PKTLEQICRECFYEV 43 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~------~~~~~~lC~~cf~~~ 43 (357)
.++|..|+...|..++ +.+-..+|+.||...
T Consensus 139 ~~~C~vC~~~~A~~v~~~d~~~p~~P~~~C~~Cf~~l 175 (196)
T PF12251_consen 139 RRKCSVCGIYPAKWVTYNDELAPEDPCFFCDSCFRLL 175 (196)
T ss_pred cccCCCCCCCCCEEEEECCccCCCCCchhHHHHHHHh
Confidence 4679999988887776 344567999999644
No 264
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=30.75 E-value=1.1e+02 Score=26.16 Aligned_cols=56 Identities=18% Similarity=0.414 Sum_probs=33.6
Q ss_pred CcccccccCCCceeeccCCCccchHHHHHHHH--HHHHHHHHhhcCC--CC-CCCEEEEEecCChhHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICRECFYEVF--EEEIHQVIVGNQL--FK-AGERIAIGASGGKDST 75 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~--~~kv~~~i~k~~l--~~-~~~kvlVa~SGG~DS~ 75 (357)
-..|.-|+. +. ....||..||.+.- .+.+++-+..+.- .+ ...-+.|.+-|-.|+-
T Consensus 93 l~~CP~CGh----~k---~a~~LC~~Cy~kV~ket~ei~~k~~iq~~~~~e~~d~e~~Vly~Ge~d~~ 153 (176)
T KOG4080|consen 93 LNTCPACGH----IK---PAHTLCDYCYAKVHKETSEIKKKMMIQEPYVGEKQDKEVYVLYRGEPDAP 153 (176)
T ss_pred cccCcccCc----cc---cccccHHHHHHHHHHHHHHHHHHHhccCCCCCCcCcceEEEEecCCCCcc
Confidence 346999996 22 23479999996432 2333333332221 12 2234899999999987
No 265
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=30.63 E-value=4.5e+02 Score=24.50 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg 122 (357)
.....+++.+.+.--..+....++.++||.+ .+..++..+... +-+ ++.++.|. +.. .....++.+|
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~--~l~~~~~~~~~~---~~~--vi~~~~~~--~~~----~~~~~a~~~g 97 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTF--AVEATIGSLVPR---DGK--LLVLINGA--YGE----RLAKICEYLG 97 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHH--HHHHHHHhccCC---CCe--EEEECCCc--hhh----HHHHHHHHcC
Confidence 3455556666554333333324455677744 444445544211 212 34444443 111 1346678899
Q ss_pred CCeEEEeeccccCCCHHHHHHHhC-CC--------CCchhHH-HHHHHHHHHHHHHCCCCEEEcC
Q 041164 123 LPLKIVSYKDLYGWTMDEIVKVIG-LK--------NNCTFCG-VFRRQALDRGASLLKVDKIATG 177 (357)
Q Consensus 123 i~~~iv~~~~~~~~~i~~~~~~~~-~~--------~~c~~c~-~~r~~~l~~~A~~~g~~~I~tG 177 (357)
+++..+++++.++..++.+..... .+ ++.+..+ ..-...+.++|+++|+-.|+-+
T Consensus 98 ~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~ 162 (355)
T TIGR03301 98 IPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA 162 (355)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe
Confidence 999998876555566666554211 11 1111112 3345778889999987666654
No 266
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=30.47 E-value=3.1e+02 Score=25.07 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHh---CCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCC
Q 041164 111 LQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVI---GLKNNCTFCGVFRRQALDRGASLLKVDKIATGHN 179 (357)
Q Consensus 111 ~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~---~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~ 179 (357)
.+..++.+-++|||-..+-++..-..+.|.+.+.. +..+.......+...-..-+|++.|.+.+..|..
T Consensus 99 a~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~~a~ 170 (239)
T PRK10834 99 PMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVP 170 (239)
T ss_pred HHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 45566777777777554444332223334433210 1111111111122222233578889888877643
No 267
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=30.41 E-value=3e+02 Score=26.16 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=26.1
Q ss_pred CCEEEEEe-cCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC
Q 041164 61 GERIAIGA-SGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104 (357)
Q Consensus 61 ~~kvlVa~-SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~ 104 (357)
+.+|+|.. +||.-|..++.+|..+ |+++ ..++-|+.
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~~------G~~v--~~L~GG~~ 110 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQI------GFRV--PRLEGGYK 110 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHc------CCCE--EEecChHH
Confidence 33466666 7999999999999887 8864 44566653
No 268
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=30.03 E-value=2e+02 Score=26.46 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=40.5
Q ss_pred EEecCChh-HHHHHHHHHHHhhhCCCCeeE-EEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 66 IGASGGKD-STVLAFVLSELNRRHNYGLDL-FLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 66 Va~SGG~D-S~~LL~ll~~~~~~~~~g~~v-~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
|.++||.| +.+|.++|... |... .+|+||.. .+.+..+.+.|+..||++..+.+.
T Consensus 155 Ilft~~~~KG~~L~~fL~~~------~~~pk~IIfIDD~-----~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 155 ILFTGGQDKGEVLKYFLDKI------NQSPKKIIFIDDN-----KENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred eEEeCCCccHHHHHHHHHHc------CCCCCeEEEEeCC-----HHHHHHHHHHHhhCCCcEEEEEEc
Confidence 56677766 45666666666 3333 57788764 577899999999999999998875
No 269
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=29.70 E-value=47 Score=30.39 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChhHHHH
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKDSTVL 77 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~L 77 (357)
+++.+.++. +.++|-+++.+|||-.|++-
T Consensus 104 ~~il~~~~~---~~~~dlvl~LiSGGgSALl~ 132 (238)
T PF13660_consen 104 RRILELARE---LTEDDLVLVLISGGGSALLE 132 (238)
T ss_dssp HHHHHHHCC-----TTSEEEEEE-TTHHHHS-
T ss_pred HHHHHHHhc---CCCCCeEEEEecCChHHhhc
Confidence 445555543 57889999999999988764
No 270
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.70 E-value=76 Score=28.08 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHcCCcccccCCCCCC---hhhHHHHHHHHHHHHH
Q 041164 221 YTYEKEIMFTYAYFKRLDYFSTECIYSP---NAYRGFAREFIKDLER 264 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~~~~~~~~---~~~r~~ir~~l~~Le~ 264 (357)
+++++|-.. ||+.+|+.+.++.+.... +.+++..+++.+.++.
T Consensus 128 ~Vs~EEGea-FA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 128 EVSKEEGEA-FAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred cccHHHHHH-HHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 689999999 999999999877655432 3566666666666554
No 271
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=29.68 E-value=74 Score=23.64 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.8
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCee-EEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLD-LFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~-v~av~id~g~ 103 (357)
+.++++|+|...+|..|..++..|.+. |+. +. .++.|+
T Consensus 53 ~~~~~~ivv~c~~g~~s~~a~~~l~~~------G~~~v~--~l~gG~ 91 (96)
T cd01444 53 LDRDRPVVVYCYHGNSSAQLAQALREA------GFTDVR--SLAGGF 91 (96)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHc------CCceEE--EcCCCH
Confidence 456778999999999999999888886 664 33 455554
No 272
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.64 E-value=1.2e+02 Score=26.27 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=42.4
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
.-|.-||++-..-.+-=+-.++.+++.. |..+.++. ......|..+++.+|++++.-
T Consensus 34 DlDNTLv~wd~~~~tpe~~~W~~e~k~~---gi~v~vvS---------Nn~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 34 DLDNTLVPWDNPDATPELRAWLAELKEA---GIKVVVVS---------NNKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred eccCceecccCCCCCHHHHHHHHHHHhc---CCEEEEEe---------CCCHHHHHhhhhhcCCceeec
Confidence 3467789999999999888999888654 67766652 222466888899999988664
No 273
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=29.52 E-value=1.3e+02 Score=28.48 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=21.4
Q ss_pred ccccccccccccccccchhhHHHHH
Q 041164 290 EQGTCERCGYISSQKWCKACVLLEG 314 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~~~~~ 314 (357)
+.+.|..||.|....-|+.|+.+..
T Consensus 318 d~~fCstCG~~ga~KrCs~CKav~Y 342 (396)
T KOG1710|consen 318 DCQFCSTCGHPGAKKRCSQCKAVAY 342 (396)
T ss_pred ecccccccCCCCccchhhhhHHHHH
Confidence 3577999999999999999997644
No 274
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=29.50 E-value=2.4e+02 Score=21.50 Aligned_cols=62 Identities=27% Similarity=0.410 Sum_probs=43.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC--CCC----C-ChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG--ISG----Y-RDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g--~~~----~-~~~~~~~v~~~~~~lgi~~~iv 128 (357)
+-+|+|-...|.-|.++-.++.++ |.+++.++.+.. +.. . ..+.+..+.++.++.+..+-+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~l------g~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~ 89 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERL------GCDVIELNCDPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIA 89 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHT------TCEEEEESSS-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc------CCcEEEEecccccccccccccccccchhHHHHHHhhccCceEEEE
Confidence 449999999999999999999997 787777655322 111 1 1145677888888888766544
No 275
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=29.43 E-value=87 Score=30.87 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCEEEEEecCChhH---HHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC
Q 041164 61 GERIAIGASGGKDS---TVLAFVLSELNRRHNYGLDLFLLSIDEGISGY 106 (357)
Q Consensus 61 ~~kvlVa~SGG~DS---~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~ 106 (357)
+..-.+++=||+|| +.+.++++++.++ |+++..+-.|-|+...
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~r---G~~v~iiDaDvGQ~ei 116 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLAR---GRKVAIIDADVGQSEI 116 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhc---CceEEEEeCCCCCccc
Confidence 44567888899997 6666777777544 7889999999998654
No 276
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=29.25 E-value=6.6e+02 Score=26.00 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEE--EEecCCCC
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFL--LSIDEGIS 104 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~a--v~id~g~~ 104 (357)
-.+++.++++++++- .+.+-||-||+..++.|.+...+.+.++.|+. -+||..+.
T Consensus 149 ~~~~~~~~l~~~~Id------~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~ 205 (539)
T TIGR02477 149 QFAKALTTAKKLKLD------GLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLK 205 (539)
T ss_pred HHHHHHHHHHHcCCC------EEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCC
Confidence 345667777776551 36678999999999999986554433455543 36675553
No 277
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=29.24 E-value=5.8e+02 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=32.2
Q ss_pred CCCEEEEEecCChhHH-HHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEee
Q 041164 60 AGERIAIGASGGKDST-VLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~-~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
.+.|+ ++.|+.|.. .+..+|.++ |.++.++..+... +...+.++++....+.+..+++.
T Consensus 299 ~gkrv--~v~g~~~~~~~l~~~L~el------G~~~~~v~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~ 358 (429)
T cd03466 299 FGRKA--AIYGEPDFVVAITRFVLEN------GMVPVLIATGSES----KKLKEKLEEDLKEYVEKCVILDG 358 (429)
T ss_pred CCCEE--EEEcCHHHHHHHHHHHHHC------CCEEEEEEeCCCC----hHHHHHHHHHHHhcCCceEEEeC
Confidence 45675 455555543 233455444 8888776665432 33344455555666666666543
No 278
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=29.20 E-value=88 Score=26.04 Aligned_cols=21 Identities=33% Similarity=0.803 Sum_probs=17.7
Q ss_pred cccccccccc-cccccchhhHH
Q 041164 291 QGTCERCGYI-SSQKWCKACVL 311 (357)
Q Consensus 291 ~~~C~~Cg~p-~~~~~c~~c~~ 311 (357)
.-.|+.||.| .++.+|..|..
T Consensus 81 ~~~CE~CG~~I~~Gr~C~~C~~ 102 (137)
T TIGR03826 81 GYPCERCGTSIREGRLCDSCAG 102 (137)
T ss_pred cCcccccCCcCCCCCccHHHHH
Confidence 3569999998 66899999985
No 279
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=28.77 E-value=1.8e+02 Score=26.31 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=29.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEG 102 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g 102 (357)
..+.+++|||.-=..+...|.+.....+..+ +++++++|+-
T Consensus 28 ~~~~l~lsgGstP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~ 69 (232)
T PRK09762 28 PDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEW 69 (232)
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhhcCCCHHHeEEEcCcEE
Confidence 4789999999998888888886432222333 5888888873
No 280
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=28.53 E-value=6.2e+02 Score=25.49 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEe
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSI 99 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~i 99 (357)
++...+.+++-.-.|.|++|. .||.++-.++.++.++ |.+++++..
T Consensus 321 ~~~~~ld~~~~~L~GKrv~i~-~g~~~~~~~~~~l~EL------Gmevv~~g~ 366 (466)
T TIGR01282 321 AVDAVIAKYRPRLEGKTVMLY-VGGLRPRHVIGAFEDL------GMEVIGTGY 366 (466)
T ss_pred HHHHHHHHHHHhcCCCEEEEE-CCCCcHHHHHHHHHHC------CCEEEEEee
Confidence 344445545444467776555 5778888888888776 999876644
No 281
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=28.31 E-value=2.3e+02 Score=23.01 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=40.2
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
...+.+|.+|.|.|+.-....++.+.+ .++.+.+|.+.... ...+.++++++..|-.++.+
T Consensus 98 ~~~~~iv~iTDG~~~~~~~~~~~~~~~---~~i~i~~v~~~~~~-----~~~~~l~~la~~tgG~~~~~ 158 (172)
T PF13519_consen 98 NRRRAIVLITDGEDNSSDIEAAKALKQ---QGITIYTVGIGSDS-----DANEFLQRLAEATGGRYFHV 158 (172)
T ss_dssp SEEEEEEEEES-TTHCHHHHHHHHHHC---TTEEEEEEEES-TT------EHHHHHHHHHHTEEEEEEE
T ss_pred CCceEEEEecCCCCCcchhHHHHHHHH---cCCeEEEEEECCCc-----cHHHHHHHHHHhcCCEEEEe
Confidence 356799999999987655566666643 37777777664432 11367888888887666665
No 282
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=28.18 E-value=1.5e+02 Score=26.84 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCCCCC-Chh-hHHHHH-HHH
Q 041164 43 VFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGISGY-RDD-SLQTVK-RNE 118 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~~~~-~~~-~~~~v~-~~~ 118 (357)
.+.+.+.+.|.+ ...+.|++|||.-=..+...|.+. . ..+ +++++.+|+-.-.. +++ ....++ .+.
T Consensus 15 ~i~~~i~~~i~~------~~~~~lalsGGstp~~~y~~L~~~--~--i~w~~v~~f~~DER~Vp~~~~~SN~~~~~~~Ll 84 (233)
T TIGR01198 15 RIATKLQTALAE------RGQFSLALSGGRSPIALLEALAAQ--P--LDWSRIHLFLGDERYVPLDHADSNTGLAREALL 84 (233)
T ss_pred HHHHHHHHHHHh------cCcEEEEECCCccHHHHHHHHhhC--C--CCcceEEEEEecccccCCCCccchHHHHHHHHh
Confidence 344444444433 457999999999988888888763 1 232 68889999865222 222 233344 345
Q ss_pred HHhCCCeE
Q 041164 119 IQYGLPLK 126 (357)
Q Consensus 119 ~~lgi~~~ 126 (357)
..++++-.
T Consensus 85 ~~~~i~~~ 92 (233)
T TIGR01198 85 DRVAIPAS 92 (233)
T ss_pred ccCCCChh
Confidence 55666643
No 283
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.06 E-value=6.3e+02 Score=25.49 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChhHH-HHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKDST-VLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~-~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
+++...+.+++-.-.|.+++|+ ||.|-. .++.+|.++ |+++..+..++.
T Consensus 309 ~~~~~~l~~~~~~l~Gk~vaI~--~~~~~~~~la~~l~El------Gm~v~~~~~~~~ 358 (475)
T PRK14478 309 AKAWAALEPYRPRLEGKRVLLY--TGGVKSWSVVKALQEL------GMEVVGTSVKKS 358 (475)
T ss_pred HHHHHHHHHHHHHhCCCEEEEE--cCCchHHHHHHHHHHC------CCEEEEEEEECC
Confidence 3455555555444467787663 444433 355666665 999998888765
No 284
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=27.92 E-value=24 Score=23.49 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=18.4
Q ss_pred ccccccCCCceeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|++.+. -.+...+..+|.+|-.+-
T Consensus 1 ~CiiC~~~~~-~GI~I~~~fIC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKE-EGIHIYGKFICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCC-CCEEEECeEehHHHHHHh
Confidence 4889987433 233335889999996543
No 285
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.88 E-value=41 Score=18.77 Aligned_cols=19 Identities=21% Similarity=0.877 Sum_probs=12.0
Q ss_pred ccccccCCCceeeccCCCccchHHH
Q 041164 15 LCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
.|.+|+.+ + ..+..+|..|
T Consensus 1 ~Cp~CG~~---~---~~~~~fC~~C 19 (23)
T PF13240_consen 1 YCPNCGAE---I---EDDAKFCPNC 19 (23)
T ss_pred CCcccCCC---C---CCcCcchhhh
Confidence 48888852 1 1356778776
No 286
>PHA00626 hypothetical protein
Probab=27.83 E-value=16 Score=25.38 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=22.1
Q ss_pred cccccccCCCceee----ccCCCccchHHHHHHHHHHHH
Q 041164 14 RLCSTCNQRKAALK----RPKTLEQICRECFYEVFEEEI 48 (357)
Q Consensus 14 ~~C~~C~~~~a~~~----~~~~~~~lC~~cf~~~~~~kv 48 (357)
|.|.+|+. .-++. ...++...|+.|=+.+-...|
T Consensus 1 m~CP~CGS-~~Ivrcg~cr~~snrYkCkdCGY~ft~~~~ 38 (59)
T PHA00626 1 MSCPKCGS-GNIAKEKTMRGWSDDYVCCDCGYNDSKDAF 38 (59)
T ss_pred CCCCCCCC-ceeeeeceecccCcceEcCCCCCeechhhh
Confidence 67999996 22332 133688999999665554444
No 287
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=27.78 E-value=61 Score=28.05 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 159 RQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 159 ~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
...+...|++.+++.+++||+-.-.
T Consensus 98 ~~~l~~la~~~~~Dvli~GHTH~p~ 122 (172)
T COG0622 98 LSLLEYLAKELGADVLIFGHTHKPV 122 (172)
T ss_pred HHHHHHHHHhcCCCEEEECCCCccc
Confidence 5678889999999999999986543
No 288
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=27.77 E-value=1.2e+02 Score=25.68 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=27.8
Q ss_pred EEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 95 FLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 95 ~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
.++.||+|... .++..+.++++|+.+|+|+.+++.+
T Consensus 120 ~~~~Idtg~~~-~~~~~~~~~~~a~~~~l~~~~~~g~ 155 (166)
T PF07796_consen 120 RVVLIDTGVYD-EEDFEEKVREFAEFLGLPIEEIPGD 155 (166)
T ss_pred eEEEEeccccc-chHHHHHHHHHHHHhCCCEEEEeCC
Confidence 56778988742 2334788999999999999998764
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=27.76 E-value=4.9e+02 Score=24.06 Aligned_cols=56 Identities=18% Similarity=0.363 Sum_probs=38.6
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEE
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKI 127 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~i 127 (357)
+++..|--=|++++.++..+.+. |.+|.++..|. ++....+.++.+++..|+++..
T Consensus 77 l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~----~r~~a~~ql~~~~~~~~i~~~~ 132 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDT----FRAAAIEQLEEWAKRLGVDVIK 132 (272)
T ss_pred EECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCC----CCHHHHHHHHHHHHhCCeEEEe
Confidence 44555555567777777766443 77888888875 3445567788899999977653
No 290
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=27.60 E-value=1.6e+02 Score=20.94 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=28.0
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~ 104 (357)
..++++|+|...+|..|...+..|++. |+. .+..++.|+.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~------G~~-~v~~l~gG~~ 86 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKA------GGT-NVYNLEGGML 86 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHh------Ccc-cEEEecCChh
Confidence 456678888888889999999888886 544 2234556653
No 291
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=27.58 E-value=3.1e+02 Score=21.59 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=36.1
Q ss_pred CCEEEEEecCC--hhHHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGG--KDSTVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG--~DS~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
+..++|-|.+. ..+...+--|.++.++++ .++.+++|+.+... .+.+.+.++++++++++++.++
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~---~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA---FERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc---cccCHHHHHHHHHHcCCCCCEE
Confidence 44555555433 223344445555554443 35666666553211 2344667888999999887655
No 292
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=27.16 E-value=1.2e+02 Score=26.36 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=25.5
Q ss_pred EEEEEecCChhHHH-HHHHHHHHhhhCCCCeeEEEEE
Q 041164 63 RIAIGASGGKDSTV-LAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 63 kvlVa~SGG~DS~~-LL~ll~~~~~~~~~g~~v~av~ 98 (357)
||+++++|+.+.+. ...++.++.++. |.++.++.
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~--g~eV~vv~ 35 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRY--GDEIDVFL 35 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhc--CCEEEEEE
Confidence 58999999988877 677777775443 77777663
No 293
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.13 E-value=1.6e+02 Score=28.80 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHH
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSEL 84 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~ 84 (357)
+.+++.+.+.+. .-.++..|+|=++||.=+|++..++.-.
T Consensus 54 ~y~~l~~~l~~~-~~~~~~~v~vDiTGGTK~Msaglalaa~ 93 (379)
T PF09670_consen 54 CYRKLREVLEKL-RDFPGHEVAVDITGGTKSMSAGLALAAI 93 (379)
T ss_pred HHHHHHHHHHHH-hcCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence 345566666665 1224578999999999999999888876
No 294
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=26.94 E-value=42 Score=21.99 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=18.7
Q ss_pred ccccccCCCceeeccCC-----CccchHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKT-----LEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~-----~~~lC~~cf~~~ 43 (357)
.|..|+. .+++..|+. +--||..||.+.
T Consensus 2 ~CDgCg~-~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGV-LPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCC-CcccccceEeCCCCCCccHHHHhhhh
Confidence 4777885 566666654 234999998654
No 295
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=26.82 E-value=1.2e+02 Score=27.23 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=27.5
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+.+|+|+++||.-..=..++++.+.+ |.+|.++.
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~L~~----g~~V~Vvm 52 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHCFSE----WAEVRAVV 52 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHhcC----CCeEEEEE
Confidence 356899999999998888888888752 56777664
No 296
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=26.80 E-value=86 Score=28.75 Aligned_cols=70 Identities=30% Similarity=0.399 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL 123 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi 123 (357)
..+++.-..+++.+ .|.+|+ +=|--|-+.++..|... .-+++++-||. .-++++.+.|+++|+
T Consensus 30 ~~~Ra~~~~~~gdL--~gk~il--~lGDDDLtSlA~al~~~------~~~I~VvDiDe-------Rll~fI~~~a~~~gl 92 (243)
T PF01861_consen 30 TLRRAALMAERGDL--EGKRIL--FLGDDDLTSLALALTGL------PKRITVVDIDE-------RLLDFINRVAEEEGL 92 (243)
T ss_dssp HHHHHHHHHHTT-S--TT-EEE--EES-TT-HHHHHHHHT--------SEEEEE-S-H-------HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCcc--cCCEEE--EEcCCcHHHHHHHhhCC------CCeEEEEEcCH-------HHHHHHHHHHHHcCC
Confidence 33343333444333 244554 34666776666666544 55788887764 448999999999999
Q ss_pred CeEEEee
Q 041164 124 PLKIVSY 130 (357)
Q Consensus 124 ~~~iv~~ 130 (357)
++..+..
T Consensus 93 ~i~~~~~ 99 (243)
T PF01861_consen 93 PIEAVHY 99 (243)
T ss_dssp -EEEE--
T ss_pred ceEEEEe
Confidence 9766644
No 297
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=26.69 E-value=3.2e+02 Score=21.54 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=55.5
Q ss_pred CCCEEEEEec-CChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC--------C--------------hhhHHHHHH
Q 041164 60 AGERIAIGAS-GGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY--------R--------------DDSLQTVKR 116 (357)
Q Consensus 60 ~~~kvlVa~S-GG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~--------~--------------~~~~~~v~~ 116 (357)
..++|++++. |..-+...+.......... +..+.++++-...... . .+..+.+.+
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKA 81 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 3468999999 8888877777777654432 4455555543222110 0 222445566
Q ss_pred HHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 117 NEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 117 ~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
.++..|++. +......|... ...+..+|.+.+++.|++|.+.
T Consensus 82 ~~~~~~~~~--~~~~~~~g~~~--------------------~~~i~~~a~~~~adliV~G~~g 123 (154)
T COG0589 82 LAEAAGVPV--VETEVVEGSPS--------------------AEEILELAEEEDADLIVVGSRG 123 (154)
T ss_pred HHHHcCCCe--eEEEEecCCCc--------------------HHHHHHHHHHhCCCEEEECCCC
Confidence 677778775 11111122221 1224567777799999999973
No 298
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=26.57 E-value=1.7e+02 Score=21.11 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=27.7
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
..++++|+|-..+|..|..++..|.+. |++- +..++-|+
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~------G~~~-v~~l~GG~ 91 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLREL------GFKN-VYLLDGGY 91 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHc------CCCc-eEEecCCH
Confidence 456678888889999998888888876 6652 23445554
No 299
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=26.51 E-value=3.1e+02 Score=25.30 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=45.5
Q ss_pred CEEEEEecCC--hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccC--CC
Q 041164 62 ERIAIGASGG--KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYG--WT 137 (357)
Q Consensus 62 ~kvlVa~SGG--~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~--~~ 137 (357)
-.|++++++. .|+.-++..+.++ |.+-+.+.--+-.....++-.++.+++++..++|+.+.+.....| .+
T Consensus 70 ~~vi~gv~~~~~~~~~~~a~~a~~~------G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls 143 (284)
T cd00950 70 VPVIAGTGSNNTAEAIELTKRAEKA------GADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIE 143 (284)
T ss_pred CcEEeccCCccHHHHHHHHHHHHHc------CCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCC
Confidence 3577777762 4555555555554 776555443322222234456788999999999999998875444 34
Q ss_pred HHHHH
Q 041164 138 MDEIV 142 (357)
Q Consensus 138 i~~~~ 142 (357)
.+.+.
T Consensus 144 ~~~~~ 148 (284)
T cd00950 144 PETVL 148 (284)
T ss_pred HHHHH
Confidence 44443
No 300
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=26.39 E-value=70 Score=20.55 Aligned_cols=29 Identities=28% Similarity=0.569 Sum_probs=16.0
Q ss_pred cccccccCCCc---eeeccCCCccchHHHHHH
Q 041164 14 RLCSTCNQRKA---ALKRPKTLEQICRECFYE 42 (357)
Q Consensus 14 ~~C~~C~~~~a---~~~~~~~~~~lC~~cf~~ 42 (357)
..|+.|++.+. .++.-.++...|.+|...
T Consensus 2 ~~CSFCgr~~~~v~~li~g~~~~~IC~~Cv~~ 33 (41)
T PF06689_consen 2 KRCSFCGRPESEVGRLISGPNGAYICDECVEQ 33 (41)
T ss_dssp -B-TTT--BTTTSSSEEEES-SEEEEHHHHHH
T ss_pred CCccCCCCCHHHHhceecCCCCcEECHHHHHH
Confidence 36999997543 333333468999999654
No 301
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=26.38 E-value=5.3e+02 Score=23.96 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=41.5
Q ss_pred EEEEEecCCh--hHHHHH-HHHHHHhhhCCCCeeEEEEEecCCCCCCC----------hhhHHHHHHHHHHhCCCeEEE
Q 041164 63 RIAIGASGGK--DSTVLA-FVLSELNRRHNYGLDLFLLSIDEGISGYR----------DDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 63 kvlVa~SGG~--DS~~LL-~ll~~~~~~~~~g~~v~av~id~g~~~~~----------~~~~~~v~~~~~~lgi~~~iv 128 (357)
+++|.+|=|. |.--.. .++.++.++ ++.++.+.+|....+.+ +...-.+..+.+.+++|++++
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~---~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~ 241 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQ---NVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVI 241 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHc---CCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEE
Confidence 8999999998 653333 224444333 78999999997621111 000116788999999999988
No 302
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=26.28 E-value=36 Score=26.75 Aligned_cols=39 Identities=36% Similarity=0.628 Sum_probs=22.0
Q ss_pred ccccccccc-cccc--cccchhhHHHHHhhcCCCCc-ceeccc
Q 041164 290 EQGTCERCG-YISS--QKWCKACVLLEGLNRGLPKM-GIVRSR 328 (357)
Q Consensus 290 ~~~~C~~Cg-~p~~--~~~c~~c~~~~~~~~~~~~~-~~~~~~ 328 (357)
....|.+|| .|.. .=.|..|..+++-+.+=|++ ||..++
T Consensus 54 ~~~rCIiCg~~~g~sdAYYC~eC~~lEKdRDGCPriiN~Gs~r 96 (106)
T PF03660_consen 54 LQGRCIICGSGPGVSDAYYCWECVRLEKDRDGCPRIINVGSSR 96 (106)
T ss_dssp TTSB-TTTSSSB--EE-EE-HHHHHHTSTTS----B-S-SS-S
T ss_pred cCceEEEecCCCCcccceehhhhHhhhccccCCceeEeccchh
Confidence 457899999 6644 44899999999999999985 444444
No 303
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=26.27 E-value=4.7e+02 Score=23.27 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=60.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
+|+|..||+-.-+- .++...... ..+.++.+|.-|.. -.++.+.|++.|||..+++.++.-+ -+
T Consensus 2 ki~VlaSG~GSNlq--aiida~~~~-~~~a~i~~Visd~~--------~A~~lerA~~~gIpt~~~~~k~~~~--r~--- 65 (200)
T COG0299 2 KIAVLASGNGSNLQ--AIIDAIKGG-KLDAEIVAVISDKA--------DAYALERAAKAGIPTVVLDRKEFPS--RE--- 65 (200)
T ss_pred eEEEEEeCCcccHH--HHHHHHhcC-CCCcEEEEEEeCCC--------CCHHHHHHHHcCCCEEEeccccCCC--HH---
Confidence 78999999754432 223322211 13567888877653 2356778999999998887654211 11
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHH
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 190 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~ 190 (357)
..-..+.+.-++.+.+.|+++=.+.=+..+++..
T Consensus 66 --------------~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~ 99 (200)
T COG0299 66 --------------AFDRALVEALDEYGPDLVVLAGYMRILGPEFLSR 99 (200)
T ss_pred --------------HHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHH
Confidence 1223456666788999999987766554444443
No 304
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=26.06 E-value=2.5e+02 Score=22.46 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=41.7
Q ss_pred CCCCCEEEE-EecCCh-hHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc
Q 041164 58 FKAGERIAI-GASGGK-DSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 58 ~~~~~kvlV-a~SGG~-DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
+++|+=++. +++-.. |.-.+..+++++.+. | +.++-|..|- +.++--+.+.+.|+++++|+..++.+-.|
T Consensus 40 l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~---~--~agL~i~~~~--~~~~iP~~~i~~A~~~~lPli~ip~~~~f 111 (123)
T PF07905_consen 40 LRGGELVLTTGYALRDDDEEELREFIRELAEK---G--AAGLGIKTGR--YLDEIPEEIIELADELGLPLIEIPWEVPF 111 (123)
T ss_pred CCCCeEEEECCcccCCCCHHHHHHHHHHHHHC---C--CeEEEEeccC--ccccCCHHHHHHHHHcCCCEEEeCCCCCH
Confidence 566665554 333344 345677888887543 3 3444443331 11233356788999999999998775433
No 305
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.78 E-value=4.4e+02 Score=26.94 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=26.7
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
+.|++-|=--|+-|+.+..-+.+. +++|.++-.|.-
T Consensus 382 ~fvGVNGVGKSTNLAKIayWLlqN---kfrVLIAACDTF 417 (587)
T KOG0781|consen 382 SFVGVNGVGKSTNLAKIAYWLLQN---KFRVLIAACDTF 417 (587)
T ss_pred EEEeecCccccchHHHHHHHHHhC---CceEEEEeccch
Confidence 677888877788888776665443 788888888763
No 306
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=25.66 E-value=2.5e+02 Score=23.95 Aligned_cols=69 Identities=23% Similarity=0.184 Sum_probs=39.8
Q ss_pred cCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC----CCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 69 SGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI----SGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 69 SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~----~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
-.|.||..+|.-..++-+.. ||++. ++|-.+ +-..+.-.+..+.+++-++++...++++...+..+..+
T Consensus 68 ~k~~~S~~lL~~~~~~~~~~--g~~i~--niD~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E~lg~~ 140 (157)
T PF02542_consen 68 YKGADSRILLKEVVELLREK--GYRIV--NIDITIIAERPKISPYRPAMRENLAKLLGIPPDRVNIKATTTEGLGFI 140 (157)
T ss_dssp GTTCSHHHHHHHHHHHHHHT--TEEEE--EEEEEEESSSSTTGGGHHHHHHHHHHHHTS-GGGEEEEEE-TTTSHHH
T ss_pred hCCCCHHHHHHHHHHHHHHc--CcEEE--EEEEEEEcCCCccHHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcc
Confidence 47899999998777654443 55442 223211 11234444556778999999977777765443333333
No 307
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=25.63 E-value=32 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.580 Sum_probs=19.3
Q ss_pred CcccccccCCCceeeccCCCccchHHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
+..|.+|+. ..++.+...+..-|+.|
T Consensus 18 g~~CP~Cg~-~~~~~~~~~~~~~C~~C 43 (46)
T PF12760_consen 18 GFVCPHCGS-TKHYRLKTRGRYRCKAC 43 (46)
T ss_pred CCCCCCCCC-eeeEEeCCCCeEECCCC
Confidence 356999997 56666665678888877
No 308
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=25.56 E-value=36 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=18.7
Q ss_pred Ccccccccccccc-cccccchhhHH
Q 041164 288 MPEQGTCERCGYI-SSQKWCKACVL 311 (357)
Q Consensus 288 ~~~~~~C~~Cg~p-~~~~~c~~c~~ 311 (357)
...+..|+.||++ -+.-+|..|-.
T Consensus 23 ~p~l~~C~~cG~~~~~H~vc~~cG~ 47 (55)
T TIGR01031 23 APTLVVCPNCGEFKLPHRVCPSCGY 47 (55)
T ss_pred CCcceECCCCCCcccCeeECCccCe
Confidence 3467889999999 55788988863
No 309
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=25.27 E-value=1.9e+02 Score=29.13 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=32.7
Q ss_pred EEEecCChhH---HHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 65 AIGASGGKDS---TVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 65 lVa~SGG~DS---~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
+|.+.||.|+ -++++.++-+.+ .++++-+|+. |- ....+.++++...-++++++++
T Consensus 123 IILLaGGtDGG~~e~~l~NA~~La~---~~~~~pIIyA--GN----~~a~~~V~~il~~~~~~~~i~e 181 (463)
T TIGR01319 123 IILFAGGTDGGEEECGIHNAKMLAE---HGLDCAIIVA--GN----KDIQDEVQEIFDHADIFYRITD 181 (463)
T ss_pred EEEEeCCcCCCchHHHHHHHHHHHh---cCCCCcEEEe--CC----HHHHHHHHHHHhcCCceEEecC
Confidence 5778899886 444554444432 1444444433 32 3445667777777788877775
No 310
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=25.08 E-value=1e+02 Score=19.08 Aligned_cols=31 Identities=19% Similarity=0.566 Sum_probs=20.0
Q ss_pred cccccCC-CceeeccCCCccchHHHHHHHHHH
Q 041164 16 CSTCNQR-KAALKRPKTLEQICRECFYEVFEE 46 (357)
Q Consensus 16 C~~C~~~-~a~~~~~~~~~~lC~~cf~~~~~~ 46 (357)
|..|.+. ...+++..=|-.+|++|..+++++
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC
Confidence 5566644 223344556778999998877654
No 311
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=25.05 E-value=1.1e+02 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=26.7
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
++.+|+|-..+|..|...+.+|..+ |++=.+.+++.|+
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~------G~~~~v~~l~gG~ 102 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINA------GLPNPVAALRNGT 102 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHC------CCCcceeEecCCH
Confidence 3457888888888888888888776 7742245567775
No 312
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=24.95 E-value=3.6e+02 Score=26.08 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=29.1
Q ss_pred CCCEEEEEe-cCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC
Q 041164 60 AGERIAIGA-SGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY 106 (357)
Q Consensus 60 ~~~kvlVa~-SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~ 106 (357)
++.+|+|-. .||.-|..+..+|... |+++ ..++-|+.++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~------G~~v--~~L~GG~~aw 126 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEA------GIDV--PRLEGGYKAY 126 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHc------CCCc--EEEcCCHHHH
Confidence 556777766 7999999999999876 8863 5677776443
No 313
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=24.78 E-value=1.4e+02 Score=23.22 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHH
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSEL 84 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~ 84 (357)
.+.+.+.... +.++++|++-..+|..|..++.+|..+
T Consensus 65 ~~~~~~~~~~-~~~~~~iv~yc~~g~~s~~~~~~l~~~ 101 (118)
T cd01449 65 ELRALFAALG-ITPDKPVIVYCGSGVTACVLLLALELL 101 (118)
T ss_pred HHHHHHHHcC-CCCCCCEEEECCcHHHHHHHHHHHHHc
Confidence 4445555443 345677888888888888888888776
No 314
>PRK08526 threonine dehydratase; Provisional
Probab=24.77 E-value=5.1e+02 Score=25.54 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=38.2
Q ss_pred CCCCEEEEEecCC-hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEee
Q 041164 59 KAGERIAIGASGG-KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 59 ~~~~kvlVa~SGG-~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
.++++|++.+||| .|...|..++.+-.-.. | +..-+.+.-.. .+-.+..+-.+....+..+..+..
T Consensus 293 ~~~~~Vv~ilsGGnid~~~~~~i~~~~l~~~--~-r~~~~~~~~~d---~pg~l~~~~~~~~~~~~~i~~~~~ 359 (403)
T PRK08526 293 KKGKKIGVVLSGGNIDVQMLNIIIEKGLIKS--Y-RKMKLHVTLVD---KPGALMGLTDILKEANANIVKIDY 359 (403)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhc--C-CEEEEEEEcCC---CCCHHHHHHHHHccCCCcEEEEEE
Confidence 3577899999999 89888888877642221 1 22222332221 234455555555555666555544
No 315
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.75 E-value=5.2e+02 Score=23.28 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=49.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE-ecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS-IDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~-id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
+.+|.+....+ |+++.+ |+++..+. +.+|.. -++..+..+.+..++.++++.+.+-..
T Consensus 151 ~~~v~~h~~~~-----Y~~~~~------gl~~~~~~~~~~~~~-ps~~~l~~l~~~ik~~~v~~i~~e~~~--------- 209 (256)
T PF01297_consen 151 RPVVVYHDAFQ-----YFAKRY------GLKVIGVIEISPGEE-PSPKDLAELIKLIKENKVKCIFTEPQF--------- 209 (256)
T ss_dssp GEEEEEESTTH-----HHHHHT------T-EEEEEESSSSSSS-S-HHHHHHHHHHHHHTT-SEEEEETTS---------
T ss_pred CeEEEEChHHH-----HHHHhc------CCceeeeeccccccC-CCHHHHHHHHHHhhhcCCcEEEecCCC---------
Confidence 66677777554 677775 88888776 445442 366778888888999999998875321
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcC
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATG 177 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tG 177 (357)
....+..+|++.|...+.+-
T Consensus 210 ----------------~~~~~~~la~~~g~~vv~ld 229 (256)
T PF01297_consen 210 ----------------SSKLAEALAKETGVKVVYLD 229 (256)
T ss_dssp -----------------THHHHHHHHCCT-EEEESS
T ss_pred ----------------ChHHHHHHHHHcCCcEEEeC
Confidence 11235566888887775543
No 316
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=24.74 E-value=75 Score=19.70 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=15.8
Q ss_pred cccccCCCceeecc-CCCcc-chHHHHHHHHH
Q 041164 16 CSTCNQRKAALKRP-KTLEQ-ICRECFYEVFE 45 (357)
Q Consensus 16 C~~C~~~~a~~~~~-~~~~~-lC~~cf~~~~~ 45 (357)
|..|+......-++ ..+.. ||..|.+.+-.
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk 32 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKK 32 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHH
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHH
Confidence 67787654443332 23555 99999876543
No 317
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=24.70 E-value=3.7e+02 Score=23.72 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=36.6
Q ss_pred ecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEee
Q 041164 68 ASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 68 ~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
+|=|. +++.++..+...++ .-+++++.+=. ++ +++..+....+.+++|+++.++++
T Consensus 131 iSTG~---T~lnli~al~~~~p-~~~yvvasL~d-~~--~~~~~~~~~~~~~~lgi~i~~vsL 186 (191)
T PF15609_consen 131 ISTGN---TFLNLIRALHAKYP-RKRYVVASLLD-WR--SEEDRARFEALAEELGIPIDVVSL 186 (191)
T ss_pred ccchH---HHHHHHHHHHHhCC-CceEEEEEEee-CC--CHHHHHHHHHHHHHcCCcEEEEEe
Confidence 45554 55666666665554 44566665522 21 355566778899999999999987
No 318
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=24.47 E-value=3.2e+02 Score=23.30 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=37.7
Q ss_pred EecCChhHHHHHHHHHHHhhhCCCCeeEE--EEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecc
Q 041164 67 GASGGKDSTVLAFVLSELNRRHNYGLDLF--LLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKD 132 (357)
Q Consensus 67 a~SGG~DS~~LL~ll~~~~~~~~~g~~v~--av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~ 132 (357)
.--.|.||..+|.-..+..+.. ||++. .++|--..+-..+.-...-+.+|+.|+++...++++.
T Consensus 66 ~~~kgadS~~lL~~~~~~v~~~--g~~i~Nvd~tii~~~PK~~P~~~amr~~ia~~L~i~~~~invKa 131 (159)
T COG0245 66 PRWKGADSRILLKEAVELVREK--GYRIGNVDITIIAQRPKLGPYREAMRANIAELLGIPVDRINVKA 131 (159)
T ss_pred cccCCCchHHHHHHHHHHHHHh--CcEEEeEEEEEEEecCcccchHHHHHHHHHHHhCCCchheEEEE
Confidence 3468999999887666654333 54432 2222111112233334455678999999998777753
No 319
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=24.46 E-value=1.9e+02 Score=29.81 Aligned_cols=104 Identities=9% Similarity=0.050 Sum_probs=48.3
Q ss_pred HHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHH----h--CCC---C
Q 041164 79 FVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKV----I--GLK---N 149 (357)
Q Consensus 79 ~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~----~--~~~---~ 149 (357)
.+.+....-.++|+.+ +|.||. +...++++++.++++|+++|+++.+-+.-..-|..-.++++. . ..+ .
T Consensus 359 NL~rHIeNik~fGvpv-VVAIN~-F~tDT~aEi~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ee~~~~~fk 436 (557)
T PF01268_consen 359 NLERHIENIKKFGVPV-VVAINR-FPTDTDAEIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEACEEEEPSNFK 436 (557)
T ss_dssp HHHHHHHHHHCTT--E-EEEEE---TTS-HHHHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-HHHS-----
T ss_pred HHHHHHHHHHhcCCCe-EEEecC-CCCCCHHHHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHhhccCCCCcC
Confidence 3444433222356654 344563 334578889999999999999955544322222222222211 0 011 1
Q ss_pred CchhHHHHHHHHHHHHHHH-CCCCEEEcCCChhHHH
Q 041164 150 NCTFCGVFRRQALDRGASL-LKVDKIATGHNADDIA 184 (357)
Q Consensus 150 ~c~~c~~~r~~~l~~~A~~-~g~~~I~tGh~~dD~a 184 (357)
+-+.-..-...-+..+|++ +|++-|.+-.-+.++.
T Consensus 437 ~LY~l~~sI~eKIe~IA~eIYGA~~V~~S~~A~kqL 472 (557)
T PF01268_consen 437 PLYDLEDSIEEKIETIATEIYGADGVEYSPKAKKQL 472 (557)
T ss_dssp -SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHH
T ss_pred cccCCcccHHHHHHHHHhhhcCCCcceeCHHHHHHH
Confidence 1111111234557888888 8999888755444443
No 320
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.45 E-value=26 Score=25.21 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=21.5
Q ss_pred cCCcccccccCC----CceeeccCCCccchHHHHH
Q 041164 11 AGGRLCSTCNQR----KAALKRPKTLEQICRECFY 41 (357)
Q Consensus 11 ~~~~~C~~C~~~----~a~~~~~~~~~~lC~~cf~ 41 (357)
++.|+|-.|.++ .|+-+-..-|..+|.+|.+
T Consensus 5 ~~~mKCY~C~eeGKDtdAV~iCIVCG~GlC~EHli 39 (76)
T COG4855 5 SNMMKCYDCAEEGKDTDAVGICIVCGMGLCMEHLI 39 (76)
T ss_pred hhhhHHHHHHHhCCCcccEEEEEEeCchHHHHHHH
Confidence 357889999543 3554444568899988875
No 321
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.26 E-value=3.3e+02 Score=25.27 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=45.1
Q ss_pred CEEEEEecCC--hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccC--CC
Q 041164 62 ERIAIGASGG--KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYG--WT 137 (357)
Q Consensus 62 ~kvlVa~SGG--~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~--~~ 137 (357)
-.|++++++. .|+.-++..+.++ |.+-..+.-.+-.....++-.++.+++++..++|+.+.+.....| .+
T Consensus 71 ~~vi~gv~~~~~~~~i~~a~~a~~~------G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~ 144 (292)
T PRK03170 71 VPVIAGTGSNSTAEAIELTKFAEKA------GADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDIL 144 (292)
T ss_pred CcEEeecCCchHHHHHHHHHHHHHc------CCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCC
Confidence 3577777752 3444444444444 776555544332322234456788899999999999998875444 34
Q ss_pred HHHHH
Q 041164 138 MDEIV 142 (357)
Q Consensus 138 i~~~~ 142 (357)
.+.+.
T Consensus 145 ~~~~~ 149 (292)
T PRK03170 145 PETVA 149 (292)
T ss_pred HHHHH
Confidence 44433
No 322
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.08 E-value=3.4e+02 Score=20.97 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHH
Q 041164 108 DDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETV 187 (357)
Q Consensus 108 ~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~ 187 (357)
++.++.++.+++..|+...-.-.. ....++|-++-|.=+..-+...++..+++.|++-|.+.-.-..-
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q------------~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rN 74 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQ------------KRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRN 74 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEe------------cCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHH
Confidence 566788899999999655422110 01245666677777778888899999999999999876554444
Q ss_pred HHHH
Q 041164 188 LLNI 191 (357)
Q Consensus 188 l~~l 191 (357)
|...
T Consensus 75 Le~~ 78 (95)
T PF13167_consen 75 LEKA 78 (95)
T ss_pred HHHH
Confidence 4433
No 323
>PLN02759 Formate--tetrahydrofolate ligase
Probab=23.98 E-value=4.5e+02 Score=27.60 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=52.8
Q ss_pred CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC-CCeEEEeeccccCCCHHHHHHH----hCC-CC---CchhHHHHHHH
Q 041164 90 YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG-LPLKIVSYKDLYGWTMDEIVKV----IGL-KN---NCTFCGVFRRQ 160 (357)
Q Consensus 90 ~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg-i~~~iv~~~~~~~~~i~~~~~~----~~~-~~---~c~~c~~~r~~ 160 (357)
+|+.+ +|.||. +...++++++.++++|+++| ++..+-+.-..-|..-.++++. ... ++ +-+.-..-...
T Consensus 449 fg~pv-VVaiN~-F~~Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd~~~sI~e 526 (637)
T PLN02759 449 YGVNV-VVAINM-FATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKE 526 (637)
T ss_pred cCCCe-EEEecC-CCCCCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhcCCCCccccCCCCCCHHH
Confidence 46654 344553 44467888999999999999 5887776533333333333332 110 11 11101112235
Q ss_pred HHHHHHHH-CCCCEEEcCCChhHHH
Q 041164 161 ALDRGASL-LKVDKIATGHNADDIA 184 (357)
Q Consensus 161 ~l~~~A~~-~g~~~I~tGh~~dD~a 184 (357)
-+..+|++ +|++.|.+-..+..+.
T Consensus 527 KIetIAkeIYGAd~VefS~~AkkqL 551 (637)
T PLN02759 527 KIEAIAKESYGADGVEYSEQAEAQI 551 (637)
T ss_pred HHHHHHHHccCCCceEECHHHHHHH
Confidence 56778887 7888888766555443
No 324
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=23.86 E-value=55 Score=21.93 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=16.0
Q ss_pred ccccccCCCceeeccCC-----CccchHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKT-----LEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~-----~~~lC~~cf~~~ 43 (357)
.|..|.. ..+...++. +--||.+||...
T Consensus 2 ~C~~C~~-~~i~g~R~~C~~C~dydLC~~Cf~~~ 34 (49)
T cd02345 2 SCSACRK-QDISGIRFPCQVCRDYSLCLGCYTKG 34 (49)
T ss_pred cCCCCCC-CCceEeeEECCCCCCcCchHHHHhCC
Confidence 4666664 333343332 346999999744
No 325
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=23.76 E-value=42 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.625 Sum_probs=19.0
Q ss_pred Ccccccccccccc-cccccchhhHH
Q 041164 288 MPEQGTCERCGYI-SSQKWCKACVL 311 (357)
Q Consensus 288 ~~~~~~C~~Cg~p-~~~~~c~~c~~ 311 (357)
...+..|+.||++ -+.-+|..|-.
T Consensus 24 ~~~l~~C~~CG~~~~~H~vC~~CG~ 48 (57)
T PRK12286 24 APGLVECPNCGEPKLPHRVCPSCGY 48 (57)
T ss_pred CCcceECCCCCCccCCeEECCCCCc
Confidence 3467889999999 45789988874
No 326
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.73 E-value=2.1e+02 Score=27.96 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
++.-+.++...+.++.-.-.+.+|+| +.|+-....++.++.++ |+++..+-.+.
T Consensus 266 i~~~~~~~~~~l~~~~~~l~gkrv~I-~~~~~~~~~~~~~l~el------G~~v~~~~~~~ 319 (406)
T cd01967 266 IAEEEARIKPELEKYRERLKGKKVII-YTGGARSWHVIAALREL------GMEVVAAGYEF 319 (406)
T ss_pred HHHHHHHHHHHHHHHHHhccCCEEEE-EccCcchHHHHHHHHHc------CCEEEEEEEec
Confidence 34445556666666654455778876 44455566666777776 88876665543
No 327
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=23.60 E-value=75 Score=21.81 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=22.4
Q ss_pred ccccccCCCceeeccC--CCccchHHHHHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPK--TLEQICRECFYEVFEEE 47 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~--~~~~lC~~cf~~~~~~k 47 (357)
.|..|+......-++- .+..||..|.+.+-...
T Consensus 1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~ 35 (54)
T cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG 35 (54)
T ss_pred CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC
Confidence 3889987555554443 46789999998664443
No 328
>PTZ00293 thymidine kinase; Provisional
Probab=23.53 E-value=29 Score=31.14 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=20.3
Q ss_pred cccccccCCCceeeccCCC-------------ccchHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTL-------------EQICRECFY 41 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~-------------~~lC~~cf~ 41 (357)
..|..|++ +|....+..+ .++|+.||.
T Consensus 138 aiC~~CG~-~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGK-EASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCC-cceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 46999996 7877666421 679999995
No 329
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=23.34 E-value=91 Score=21.33 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=21.6
Q ss_pred ccccccCC-CceeeccCCCccchHHHHHHHHHH
Q 041164 15 LCSTCNQR-KAALKRPKTLEQICRECFYEVFEE 46 (357)
Q Consensus 15 ~C~~C~~~-~a~~~~~~~~~~lC~~cf~~~~~~ 46 (357)
.|..|+.. ...+.. ..|..||++|+.+++.+
T Consensus 3 ~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~ 34 (63)
T smart00504 3 LCPISLEVMKDPVIL-PSGQTYERRAIEKWLLS 34 (63)
T ss_pred CCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHH
Confidence 58888753 222333 46889999999888765
No 330
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=23.24 E-value=5.2e+02 Score=25.72 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=39.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEe--cCCCC-------CCChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSI--DEGIS-------GYRDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~i--d~g~~-------~~~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
|||| +.+|-=--++.+.|++. ++++.++-. |.|.. ..+..+.+.+.++|++.++++.+.-.+
T Consensus 4 kVLv-lG~G~re~al~~~l~~~------g~~v~~~~~~~Npg~~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d 74 (435)
T PRK06395 4 KVML-VGSGGREDAIARAIKRS------GAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPD 74 (435)
T ss_pred EEEE-ECCcHHHHHHHHHHHhC------CCeEEEEECCCChhhhhcccceeecCCCCHHHHHHHHHHhCCCEEEECCC
Confidence 6776 55555556666666664 566666644 43421 012345788999999999999888654
No 331
>COG2403 Predicted GTPase [General function prediction only]
Probab=23.24 E-value=7.4e+02 Score=24.55 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=45.7
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEe--------------------cCCCCCCChhhHHHHHHHH
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSI--------------------DEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~i--------------------d~g~~~~~~~~~~~v~~~~ 118 (357)
....+|++..-||.|=-+.=..+... ..+++.+++. -+|.+-+.+++.+.+.+++
T Consensus 4 ~a~kRviiLgaggrdfhv~n~a~r~~-----~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~i 78 (449)
T COG2403 4 KARKRVIILGAGGRDFHVFNVALRDN-----PEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKII 78 (449)
T ss_pred CCceeEEEEeccCcccchhhHHhccC-----CcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHH
Confidence 34568899999999954444333332 2455544432 1344434555678899999
Q ss_pred HHhCCCeEEEeecc
Q 041164 119 IQYGLPLKIVSYKD 132 (357)
Q Consensus 119 ~~lgi~~~iv~~~~ 132 (357)
++++++..+.++++
T Consensus 79 re~~VD~~VlaySD 92 (449)
T COG2403 79 REKDVDIVVLAYSD 92 (449)
T ss_pred HHcCCCeEEEEccc
Confidence 99999999999876
No 332
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=23.06 E-value=37 Score=35.97 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=22.7
Q ss_pred cccccccCCCceeeccCC-----CccchHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKT-----LEQICRECFYEV 43 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~-----~~~lC~~cf~~~ 43 (357)
.+|..|++ .+++.+||. +.-+|..||.-.
T Consensus 604 ~kCniCk~-~pIvG~RyR~l~~fn~dlCq~CF~sg 637 (966)
T KOG4286|consen 604 AKCNICKE-CPIIGFRYRSLKHFNYDICQSCFFSG 637 (966)
T ss_pred hhcchhhh-CccceeeeeehhhcChhHHhhHhhhc
Confidence 47999996 888888876 456899998643
No 333
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=22.84 E-value=99 Score=23.22 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=26.3
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCee-EEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLD-LFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~-v~av~id~g~ 103 (357)
+.+..+|+|-.++|..|...+..|.++ |++ +. +++.|+
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~------G~~~v~--~l~Gg~ 96 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDM------GLKPVY--NIEGGF 96 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHc------ChHHhE--eecCcH
Confidence 456677888887888887777777765 665 33 556665
No 334
>PRK05481 lipoyl synthase; Provisional
Probab=22.77 E-value=4.4e+02 Score=24.68 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=44.8
Q ss_pred CeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE-eecc-cc-CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHH
Q 041164 91 GLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV-SYKD-LY-GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGAS 167 (357)
Q Consensus 91 g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv-~~~~-~~-~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~ 167 (357)
|+.+.. ++=.|+ |+++++....-++.++++++...+ .+.. .. ...+++.. ..-|.+.|..++.
T Consensus 195 gi~~~t-~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~------------k~~r~~~l~~~~~ 260 (289)
T PRK05481 195 GIPTKS-GLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYV------------TPEEFDEYKEIAL 260 (289)
T ss_pred CCeEee-eeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcC------------CHHHHHHHHHHHH
Confidence 454432 223466 667777777777788888765544 2211 00 01111111 2367889999999
Q ss_pred HCCCCEEEcCCC
Q 041164 168 LLKVDKIATGHN 179 (357)
Q Consensus 168 ~~g~~~I~tGh~ 179 (357)
+.|+.+|+-|-.
T Consensus 261 ~i~~~~~~~~~~ 272 (289)
T PRK05481 261 ELGFLHVASGPL 272 (289)
T ss_pred HcCchheEecCc
Confidence 999999998864
No 335
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=22.77 E-value=3.4e+02 Score=22.17 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCEEEEEecCC---hhHHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGG---KDSTVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG---~DS~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
|+.++|.|-++ ..+...+..+.++.+.+. .++.+++|.+| +.+.++++++++++++.++
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d---------~~~~~~~~~~~~~~~~~~l 92 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD---------KPEKLSRFAEKELLNFTLL 92 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC---------CHHHHHHHHHHhCCCCeEE
Confidence 44566666433 344444443443322221 36676666543 1355678888899887765
No 336
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=22.73 E-value=4.4e+02 Score=24.61 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=40.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC----CCeEEE
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG----LPLKIV 128 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg----i~~~iv 128 (357)
+|++=.-+|.|-...|.++... ..+++.+|+..+|.. ..+...+.+.++.+.+| ||++.-
T Consensus 3 ~viiDtD~g~DD~~Al~~~l~~-----~~i~i~gIt~~~Gn~-~~~~~~~n~~~~l~~~g~~~~iPV~~G 66 (312)
T PF01156_consen 3 KVIIDTDPGIDDALALALALAS-----PEIEILGITTVFGNV-SVEQAARNALRLLELAGGRDDIPVYKG 66 (312)
T ss_dssp EEEEEE--SHHHHHHHHHHHHH-----TTEEEEEEEE-SSSS--HHHHHHHHHHHHHHTTTCSTS-EEEE
T ss_pred EEEEECCCChhHHHHHHHHHhC-----CCcEEEEEEEecCCc-chHHHHHHHHHHHHHhcCCCccceeec
Confidence 6888888999888777777654 368999999999853 23445677888888885 566554
No 337
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.50 E-value=2.6e+02 Score=27.21 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhH-HHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDS-TVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS-~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
+++....+.+++-.-.+.+++| .|+.+. ..|+.+|.++ |+++..+.+++.. +...+.+.......
T Consensus 255 ~~~~~~~l~~~~~~l~g~~v~i--~~~~~~~~~l~~~L~el------G~~v~~v~~~~~~----~~~~e~~~~~~~~~ 320 (398)
T PF00148_consen 255 RERAEDALADYRERLGGKRVAI--YGDPDRALGLARFLEEL------GMEVVAVGCDDKS----PEDEERLRWLLEES 320 (398)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE--ESSHHHHHHHHHHHHHT------T-EEEEEEESSGG----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHhhcCceEEE--EcCchhHHHHHHHHHHc------CCeEEEEEEccCc----hhHHHHHHHHhhCC
Confidence 3445555555332224667666 444443 4455666665 9999999887763 33345555555555
No 338
>PRK12928 lipoyl synthase; Provisional
Probab=22.49 E-value=4.8e+02 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCCEEEcCC
Q 041164 157 FRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 157 ~r~~~l~~~A~~~g~~~I~tGh 178 (357)
-.+..+.++|.+.|+.+|+-|-
T Consensus 258 ~~f~~~~~~~~~~g~~~~~~~p 279 (290)
T PRK12928 258 EEFEALGQIARELGFSHVRSGP 279 (290)
T ss_pred HHHHHHHHHHHHcCCceeEecC
Confidence 4466788999999999998874
No 339
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.47 E-value=3e+02 Score=19.71 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=41.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC-------CChhhHHHHHHHHHHhCCCeEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG-------YRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~-------~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
++.++.|+--.|.+.+-.+|++. |+...++-+--.++. +.+++.+.+.++.++.|+++.-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~------gi~~~liP~P~~i~~~CG~al~~~~~d~~~i~~~l~~~~i~~~~i 69 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKN------GIPVRLIPTPREISAGCGLALRFEPEDLEKIKEILEENGIEYEGI 69 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHC------CCcEEEeCCChhccCCCCEEEEEChhhHHHHHHHHHHCCCCeeEE
Confidence 35678888888888777777775 666666544433321 24567888999999999887654
No 340
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=22.39 E-value=4.8e+02 Score=23.89 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=44.1
Q ss_pred CEEEEEecCChhHHH-HHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccC--CCH
Q 041164 62 ERIAIGASGGKDSTV-LAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYG--WTM 138 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~-LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~--~~i 138 (357)
-.|++++++. |+- ...+++...+ .|.+-..+.--+-.....++-.++.+++++..++|+.+.+.....| .+.
T Consensus 67 ~~vi~gv~~~--~~~~~i~~a~~a~~---~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~ 141 (281)
T cd00408 67 VPVIAGVGAN--STREAIELARHAEE---AGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSP 141 (281)
T ss_pred CeEEEecCCc--cHHHHHHHHHHHHH---cCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCH
Confidence 3567776553 222 3333333322 2766555544333332234446788889999999999998876544 445
Q ss_pred HHHHH
Q 041164 139 DEIVK 143 (357)
Q Consensus 139 ~~~~~ 143 (357)
+.+.+
T Consensus 142 ~~~~~ 146 (281)
T cd00408 142 ETIAR 146 (281)
T ss_pred HHHHH
Confidence 54444
No 341
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=2.8e+02 Score=23.62 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=42.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChh-hHHHHHHHHHHhCCCeEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDD-SLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~-~~~~v~~~~~~lgi~~~iv 128 (357)
.+++||-|-|.--+-+|.++.. .+++++|+-+.|+...... -.+.+++..++.|.....-
T Consensus 29 k~~vVAS~tG~tA~k~lemveg-------~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 29 KHIVVASSTGYTALKALEMVEG-------DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred ceEEEEecccHHHHHHHHhccc-------CceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 4789998888877666666544 4789999988898643222 2345777788888776554
No 342
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=22.36 E-value=3e+02 Score=23.27 Aligned_cols=49 Identities=8% Similarity=-0.122 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCCCCCEEEEEecCCh-hHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 48 IHQVIVGNQLFKAGERIAIGASGGK-DSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 48 v~~~i~k~~l~~~~~kvlVa~SGG~-DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+...+.+.....++.+|++-.++|. -|..++.+|..+ |++- +.+++-|+
T Consensus 103 ~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~------G~~~-V~~l~GG~ 152 (162)
T TIGR03865 103 FRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAY------GYSN-VYWYPDGT 152 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhc------CCcc-eEEecCCH
Confidence 3444444333345667777777775 788888888776 7752 34567776
No 343
>PLN02263 serine decarboxylase
Probab=22.29 E-value=5.7e+02 Score=25.95 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l 121 (357)
..+|..+.+.+.+.--+.+.+--.+..|||-.|..++-++.+- ..+ +.+ +++ ++..--.+.+.+.-+
T Consensus 132 ~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe--~~~---~~v-vy~-------S~~aH~Sv~KAa~ll 198 (470)
T PLN02263 132 RQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGRE--VFP---DGI-LYA-------SRESHYSVFKAARMY 198 (470)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHh--hcC---CcE-EEE-------cCCccHHHHHHHHhc
Confidence 3466777776665322223233456679998887776555442 111 111 221 333344567888889
Q ss_pred CCCeEEEeeccccCCCHHHHHH
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVK 143 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~ 143 (357)
|+++..++.++.+....+.+.+
T Consensus 199 gi~~~~Vp~d~~g~mD~~aL~~ 220 (470)
T PLN02263 199 RMECVKVDTLVSGEIDCADFKA 220 (470)
T ss_pred CCcceEeccCCCCcCcHHHHHH
Confidence 9999888876655555555443
No 344
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=22.26 E-value=5.3e+02 Score=26.50 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=50.6
Q ss_pred CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHH----hCCCCC---chhHHHHHHHHH
Q 041164 90 YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKV----IGLKNN---CTFCGVFRRQAL 162 (357)
Q Consensus 90 ~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~----~~~~~~---c~~c~~~r~~~l 162 (357)
+|+.+ +|.||.-. ..++++++.++++|+++|++..+.+.-..-|..-.++++. ...++. -+.-..-...-+
T Consensus 355 fg~p~-VVaiN~F~-~Dt~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e~~s~fk~LY~~~~si~eKI 432 (524)
T cd00477 355 FGVPV-VVAINKFS-TDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACEQPSEFKFLYDLEDPLEDKI 432 (524)
T ss_pred cCCCe-EEEecCCC-CCCHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhcCCCCCccccCCCCCHHHHH
Confidence 46654 44455433 4578889999999999999988775432223333333321 111111 110111223556
Q ss_pred HHHHHH-CCCCEEEcCCChhH
Q 041164 163 DRGASL-LKVDKIATGHNADD 182 (357)
Q Consensus 163 ~~~A~~-~g~~~I~tGh~~dD 182 (357)
..+|++ +|++.|.+-.-+..
T Consensus 433 etIAk~IYGA~~V~~S~~A~k 453 (524)
T cd00477 433 ETIAKKIYGADGVELSPKAKK 453 (524)
T ss_pred HHHHHHccCCCceeECHHHHH
Confidence 778877 78887776544433
No 345
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=22.26 E-value=1.8e+02 Score=21.92 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=25.4
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
++.+|++...+|.-|...+.+|.+. |+. .+..++-|+
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~------G~~-~v~~l~GG~ 93 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ------GFE-NVYNLQGGI 93 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc------CCc-cEEEecCCH
Confidence 4567888887888888888888775 664 223556665
No 346
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=22.16 E-value=39 Score=20.73 Aligned_cols=24 Identities=21% Similarity=0.602 Sum_probs=16.6
Q ss_pred cccccccCCCceeeccCCCccchHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
.+|..|+. +-++ ...++..+|.+|
T Consensus 4 ~~C~~C~~-~~i~-~~~~~~~~C~~C 27 (33)
T PF08792_consen 4 KKCSKCGG-NGIV-NKEDDYEVCIFC 27 (33)
T ss_pred eEcCCCCC-CeEE-EecCCeEEcccC
Confidence 36999996 4433 345678888887
No 347
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.95 E-value=3e+02 Score=22.10 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=39.7
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCe-eEE-EEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGL-DLF-LLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~-av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
+-|++.-|.+.-.+...+.+.....+... .+. +.++|.. .+...+.++++.+|+|++.++.++.
T Consensus 4 ~GiGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K------~~E~~l~~~A~~l~~~~~~~~~eeL 69 (121)
T PF01890_consen 4 LGIGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIK------ADEPGLLELAEELGIPLRFFSAEEL 69 (121)
T ss_dssp EEEEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSS------S--HHHHHHHHHCTSEEEEE-HHHH
T ss_pred EEeCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEecccc------CCCHHHHHHHHHhCCCeEEECHHHH
Confidence 56788889988888888887665543221 343 3345443 3356789999999999999976543
No 348
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=21.87 E-value=37 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=21.3
Q ss_pred cccccccCCCceeecc------CCCccchHHHHHH
Q 041164 14 RLCSTCNQRKAALKRP------KTLEQICRECFYE 42 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~------~~~~~lC~~cf~~ 42 (357)
|.|..|..+||.+... +....+|..|-..
T Consensus 1 miCq~CqqnpAti~~tkI~~~~k~e~~vCe~Ca~~ 35 (176)
T COG3880 1 MICQNCQQNPATIHFTKIINGEKIELYVCETCAKP 35 (176)
T ss_pred CcchhhcCCcceEEEEEeecCCeeEeehhhcCCCc
Confidence 7899999889988762 2235789888543
No 349
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=21.86 E-value=44 Score=31.77 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=22.2
Q ss_pred cccccccCCCceeeccCCCccchHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFY 41 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~ 41 (357)
..|..|+. ..+++-..+|..+|.+|=.
T Consensus 12 ~~Cp~Cg~-~~iv~d~~~Ge~vC~~CG~ 38 (310)
T PRK00423 12 LVCPECGS-DKLIYDYERGEIVCADCGL 38 (310)
T ss_pred CcCcCCCC-CCeeEECCCCeEeecccCC
Confidence 46999996 6777777889999999943
No 350
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.81 E-value=8.1e+02 Score=24.46 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
++.-++++...+.+++-.-.|.+++| +.||--...++.+|.++ |.++.++....+
T Consensus 306 i~~e~~~~~~~l~~~~~~L~Gkrv~i-~~g~~~~~~l~~~l~el------Gmevv~~~t~~~ 360 (456)
T TIGR01283 306 IAREEAKIRPALEPYRERLKGKKAAI-YTGGVKSWSLVSALQDL------GMEVVATGTQKG 360 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE-EcCCchHHHHHHHHHHC------CCEEEEEeeecC
Confidence 33334556666666644345777755 34443334466666665 999887755433
No 351
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=21.79 E-value=4.1e+02 Score=21.03 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=37.5
Q ss_pred CCEEEEEecCChhH---HHHHHHHHHHhhhCC-C---CeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 61 GERIAIGASGGKDS---TVLAFVLSELNRRHN-Y---GLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 61 ~~kvlVa~SGG~DS---~~LL~ll~~~~~~~~-~---g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
++.++|.|.+.-.. ...+..|.++.+++. . ++++.+|.+|... +..+.++++++.++.++..+.
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~-----d~~~~~~~~~~~~~~~~~~l~ 92 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPER-----DTPEVLKAYAKAFGPGWIGLT 92 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCC-----CCHHHHHHHHHHhCCCcEEEE
Confidence 45566666554443 345555655544332 1 3777777776532 224567788888887776654
No 352
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=21.65 E-value=5.1e+02 Score=22.12 Aligned_cols=60 Identities=25% Similarity=0.254 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC----CChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG----YRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~----~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
.|.||..+|.-..++.... |+++ +++|-.+-. ..+.-.+.-+.+++-++++...++++..
T Consensus 71 kg~~S~~lL~~~~~~~~~~--g~~i--~niD~tii~e~PKi~p~~~~m~~~la~~L~i~~~~V~iKat 134 (159)
T PRK00084 71 KGADSRVLLREVARLLRAK--GYRI--GNVDITIIAQRPKMAPHIEEMRANIAEDLGIPLDDVNVKAT 134 (159)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEE--EEEEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 7899999998776653332 4543 333322211 2233334455788899999888877643
No 353
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=21.59 E-value=7.3e+02 Score=23.86 Aligned_cols=66 Identities=6% Similarity=-0.019 Sum_probs=38.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC---------ChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY---------RDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~---------~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
+.+-++-+.||.-..-++..++++ |+++.++..+.+..+. ...+.+.+.+++++.+++..+...+
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~------G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL------GVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeC
Confidence 443334457775333333334443 8888888776543211 1123567888999999988776554
Q ss_pred c
Q 041164 132 D 132 (357)
Q Consensus 132 ~ 132 (357)
.
T Consensus 85 ~ 85 (395)
T PRK09288 85 A 85 (395)
T ss_pred c
Confidence 3
No 354
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=21.47 E-value=6e+02 Score=26.43 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=51.9
Q ss_pred CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHH----hCCCCC---chhHHHHHHHHH
Q 041164 90 YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKV----IGLKNN---CTFCGVFRRQAL 162 (357)
Q Consensus 90 ~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~----~~~~~~---c~~c~~~r~~~l 162 (357)
+|+.+ +|.||. +...++++++.++++|++.|++..+.+.-..-|..-.++++. ...++. -+.-..-...-+
T Consensus 400 fg~pv-VVaiN~-F~~Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e~~s~fk~LYd~~~sI~EKI 477 (587)
T PRK13507 400 SGINP-VVCINA-FYTDTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACNEPNDFKFLYPLEMPLRERI 477 (587)
T ss_pred cCCCe-EEEeCC-CCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhhCcCCCcccCCCCCCHHHHH
Confidence 46654 344564 334578889999999999999888755432223333333321 111111 000011223556
Q ss_pred HHHHHH-CCCCEEEcCCChhHHH
Q 041164 163 DRGASL-LKVDKIATGHNADDIA 184 (357)
Q Consensus 163 ~~~A~~-~g~~~I~tGh~~dD~a 184 (357)
..+|++ +|++-|.+-.-+..+.
T Consensus 478 etIAkeIYGAdgVe~S~~A~kqL 500 (587)
T PRK13507 478 ETIAREVYGADGVSYTPEAEAKL 500 (587)
T ss_pred HHHHHHccCCCceeECHHHHHHH
Confidence 778887 7888887755444433
No 355
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=34 Score=26.05 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=20.6
Q ss_pred cccccccCCCceeeccCCCccchHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFY 41 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~ 41 (357)
-.|..|+. + .+.+...+.|.|+.|=.
T Consensus 36 ~~Cp~C~~-~-~VkR~a~GIW~C~kCg~ 61 (89)
T COG1997 36 HVCPFCGR-T-TVKRIATGIWKCRKCGA 61 (89)
T ss_pred CcCCCCCC-c-ceeeeccCeEEcCCCCC
Confidence 36999996 5 66666889999999943
No 356
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=21.43 E-value=6.8e+02 Score=23.46 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLS 82 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~ 82 (357)
..++.++.+.+..+.- ..+..+-|-||-++.+-...|.
T Consensus 60 ~~i~~qi~~~~~~~~~---~~~~~iyf~ggt~t~l~~~~L~ 97 (302)
T TIGR01212 60 IPIKEQIKKQMKKYKK---DKKFIAYFQAYTNTYAPVEVLK 97 (302)
T ss_pred CCHHHHHHHHHHHhhc---cCEEEEEEECCCcCCCCHHHHH
Confidence 3577788777776532 3577788888888855444333
No 357
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=21.32 E-value=2.1e+02 Score=21.94 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=39.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCee-EEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLD-LFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~-v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
.++..++.+.++..++..+.+.-... +.. +..++.|.|. .-....++.+++.+|+.+....
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~~i~tD~g~----~f~~~~~~~~~~~~~i~~~~~~ 99 (120)
T PF00665_consen 38 IYAFPVSSKETAEAALRALKRAIEKR--GGRPPRVIRTDNGS----EFTSHAFEAWCKHLGIKHVFTP 99 (120)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH--S-SE-SEEEEESCH----HHHSHHHHHHHHHHT-EEEESS
T ss_pred EEEEEeeccccccccccccccccccc--ccccceeccccccc----ccccchhhhHHHHcCceEeeCC
Confidence 45667777778888888777654332 333 7788889874 2222467899999998876654
No 358
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=21.30 E-value=87 Score=29.55 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEec
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSID 100 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id 100 (357)
+.++.+|++| +.|+|+++|+.|-+. ++ |++...+.=|
T Consensus 197 k~lk~fi~ey------~pvlIgVdGaAD~l~------~~------GykP~lIvGd 233 (395)
T COG4825 197 KSLKPFIKEY------QPVLIGVDGAADVLR------KA------GYKPQLIVGD 233 (395)
T ss_pred HHHHHHHHhh------CCEEEEccchHHHHH------Hc------CCCcceeecC
Confidence 4455666665 679999999988654 43 7766555433
No 359
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=21.15 E-value=7e+02 Score=24.05 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 109 DSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 109 ~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
+.++.+..+|+..|++..-.-... ...++|-++.|.=+..-+...+++.+++.|++-|.+.-
T Consensus 17 ~~~~E~~~L~~~~~~~v~~~~~~~------------~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p 78 (351)
T TIGR03156 17 ESLEELAELAETAGAEVVGTVTQK------------RSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSP 78 (351)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEEe------------cCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 557778888888887654432211 01334445555556666777777888888888877653
No 360
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=21.03 E-value=54 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=16.3
Q ss_pred ccccccCCCceeeccCC-----CccchHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKT-----LEQICRECFYE 42 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~-----~~~lC~~cf~~ 42 (357)
.|..|+. .+++..++. +--||..||..
T Consensus 2 ~Cd~C~~-~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQM-FPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCC-CCCccCeEECCCCCCccchHHhhCC
Confidence 4666764 444444432 34699999865
No 361
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=21.02 E-value=52 Score=29.86 Aligned_cols=18 Identities=44% Similarity=0.346 Sum_probs=12.4
Q ss_pred CCCCCCEEEEEecCChhHH
Q 041164 57 LFKAGERIAIGASGGKDST 75 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~ 75 (357)
|.++|. .-+.+|||.||-
T Consensus 51 l~kkGy-~g~llSGGm~sr 68 (275)
T COG1856 51 LEKKGY-EGCLLSGGMDSR 68 (275)
T ss_pred HHhcCc-eeEEEeCCcCCC
Confidence 444554 357789999994
No 362
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=20.81 E-value=26 Score=29.25 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=20.4
Q ss_pred ccccCCcccccccCCCceeeccCCCccchHHHHHH
Q 041164 8 SKKAGGRLCSTCNQRKAALKRPKTLEQICRECFYE 42 (357)
Q Consensus 8 ~~~~~~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~ 42 (357)
+.+-.+.+|.+|+. +..+. ..+|..|+..
T Consensus 24 ~~kl~g~kC~~CG~----v~~PP--r~~Cp~C~~~ 52 (140)
T COG1545 24 EGKLLGTKCKKCGR----VYFPP--RAYCPKCGSE 52 (140)
T ss_pred hCcEEEEEcCCCCe----EEcCC--cccCCCCCCC
Confidence 35556779999995 33343 3799999865
No 363
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=20.81 E-value=57 Score=22.54 Aligned_cols=23 Identities=26% Similarity=0.712 Sum_probs=18.2
Q ss_pred Cccccccccccccc-ccccchhhH
Q 041164 288 MPEQGTCERCGYIS-SQKWCKACV 310 (357)
Q Consensus 288 ~~~~~~C~~Cg~p~-~~~~c~~c~ 310 (357)
...+..|+.||++. +..+|..|-
T Consensus 23 ~~~l~~c~~cg~~~~~H~vc~~cG 46 (56)
T PF01783_consen 23 APNLVKCPNCGEPKLPHRVCPSCG 46 (56)
T ss_dssp TTSEEESSSSSSEESTTSBCTTTB
T ss_pred ccceeeeccCCCEecccEeeCCCC
Confidence 34678899999994 578999884
No 364
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=20.81 E-value=3.1e+02 Score=25.71 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=39.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC---CCeE
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG---LPLK 126 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg---i~~~ 126 (357)
||++=.-+|.|-.+.|.++... ..++|.+|+.-.|-. ..+.....+.++.+.+| +|++
T Consensus 1 kvIiDtD~g~DD~~AL~~al~~-----p~~~v~gIt~~~Gn~-~~~~~~~na~~~l~~~g~~diPV~ 61 (304)
T cd02650 1 KLILDTDPGIDDAMALAYALAH-----PDVDLIGVTTVYGNV-TIETATRNALALLELFGRPDVPVA 61 (304)
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCCEEEEEEEccCCc-CHHHHHHHHHHHHHHhCCCCCCEE
Confidence 4666677888777766665542 368999999888863 23444666778888777 5543
No 365
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=20.77 E-value=6.6e+02 Score=27.49 Aligned_cols=78 Identities=14% Similarity=0.045 Sum_probs=50.0
Q ss_pred eEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCC
Q 041164 93 DLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVD 172 (357)
Q Consensus 93 ~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~ 172 (357)
+-++|.|+++. ++..-...+.++|++++-+++.+.++..-.....+.. ..+.+...++|+++|+.
T Consensus 249 e~ilvcI~~~~--~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~-------------~~~l~~~~~Lae~lGae 313 (890)
T COG2205 249 ERILVCISGSP--GSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKE-------------ARRLHENLRLAEELGAE 313 (890)
T ss_pred ceEEEEECCCC--chHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHH-------------HHHHHHHHHHHHHhCCe
Confidence 45677787765 4566678889999999999999877532211111111 13445667899999998
Q ss_pred EEEcCCChhHHHHHH
Q 041164 173 KIATGHNADDIAETV 187 (357)
Q Consensus 173 ~I~tGh~~dD~aet~ 187 (357)
.+.+-. +|++.++
T Consensus 314 ~~~l~~--~dv~~~i 326 (890)
T COG2205 314 IVTLYG--GDVAKAI 326 (890)
T ss_pred EEEEeC--CcHHHHH
Confidence 765432 4555443
No 366
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=20.73 E-value=5.2e+02 Score=23.24 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC----CChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG----YRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~----~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
-|.||..+|.-..++.... ||++. +||-.+-. ..+.-.+.-..+++-||++...++++..
T Consensus 128 Kg~~S~~lL~~a~~ll~~~--G~~I~--NvD~tII~q~PKi~p~~~~m~~~La~lL~i~~~~VnIKAt 191 (216)
T PLN02862 128 KGADSSVFIKEAVRLMHEA--GYEIG--NLDATLILQRPKLSPHKEAIRSNLSKLLGADPSVVNLKAK 191 (216)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEEE--EEEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 4778998887666643332 55432 22222111 1233233445678889998888877643
No 367
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=20.72 E-value=6.9e+02 Score=23.49 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcCCCCCCCEEE-EEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIA-IGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL 123 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvl-Va~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi 123 (357)
..|.....++.+ +++|++|| |+...| + .+++.+.+. |.+|+++++ |++..+.+++-....|+
T Consensus 58 ~~k~~~~~~kl~-L~~G~~lLDiGCGWG--~-l~~~aA~~y------~v~V~GvTl-------S~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 58 RAKLDLILEKLG-LKPGMTLLDIGCGWG--G-LAIYAAEEY------GVTVVGVTL-------SEEQLAYAEKRIAARGL 120 (283)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCChh--H-HHHHHHHHc------CCEEEEeeC-------CHHHHHHHHHHHHHcCC
Confidence 345555566554 47888865 455444 2 334455554 889999987 44557778887888887
Q ss_pred C
Q 041164 124 P 124 (357)
Q Consensus 124 ~ 124 (357)
+
T Consensus 121 ~ 121 (283)
T COG2230 121 E 121 (283)
T ss_pred C
Confidence 7
No 368
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=20.66 E-value=2e+02 Score=22.16 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCCCEEEEEecCCh--hHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGK--DSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~--DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++.+|+|-.++|. .|..++..|.++ |+++ ..++.|+
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~------G~~v--~~l~GG~ 100 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAEL------GFPV--KEMIGGL 100 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHc------CCeE--EEecCCH
Confidence 556677888878774 677777777775 7863 3556665
No 369
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=20.64 E-value=4.5e+02 Score=24.88 Aligned_cols=22 Identities=14% Similarity=-0.138 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHCCCCEEEcCC
Q 041164 157 FRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 157 ~r~~~l~~~A~~~g~~~I~tGh 178 (357)
-.+..+..+|.+.|+.+|+-|-
T Consensus 261 ~~f~~~~~~a~~~gf~~v~~~p 282 (302)
T TIGR00510 261 EEFDYYRSVALEMGFLHAACGP 282 (302)
T ss_pred HHHHHHHHHHHHcCChheEecc
Confidence 4567788899999999999885
No 370
>PRK07334 threonine dehydratase; Provisional
Probab=20.56 E-value=5.5e+02 Score=25.21 Aligned_cols=64 Identities=28% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCCEEEEEecCC-hhHHHHHHHHHHHhhhCCCCe--eEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeec
Q 041164 60 AGERIAIGASGG-KDSTVLAFVLSELNRRHNYGL--DLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYK 131 (357)
Q Consensus 60 ~~~kvlVa~SGG-~DS~~LL~ll~~~~~~~~~g~--~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~ 131 (357)
++++|++.++|| +|.-.+..++...... .|| .+.+...|. +-.+..+-....+.++.+.-++..
T Consensus 294 ~~~~vv~i~~ggn~d~~~l~~il~~~l~~--~~y~v~l~I~~~dr------~GlL~dI~~~is~~~~nI~~v~~~ 360 (403)
T PRK07334 294 RGRKVGLVLSGGNIDTRLLANVLLRGLVR--AGRLARLRVDIRDR------PGALARVTALIGEAGANIIEVSHQ 360 (403)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCEEEEEEEeCCC------CCHHHHHHHHHhhCCCceEEEEEE
Confidence 567899999998 5777666666652222 253 344433332 222555556667777777766653
No 371
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=20.49 E-value=90 Score=20.79 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHhCChhHHHHHH
Q 041164 251 YRGFAREFIKDLERLRPRAILDIIK 275 (357)
Q Consensus 251 ~r~~ir~~l~~Le~~~p~~~~~i~~ 275 (357)
.|.++++.|+.|...||++...+.+
T Consensus 1 ~R~F~~~~lp~l~~~NP~v~~~v~~ 25 (52)
T PF05047_consen 1 ARDFLKNNLPTLKYHNPQVQFEVRR 25 (52)
T ss_dssp HHHHHHHTHHHHHHHSTT--EEEE-
T ss_pred CHhHHHHhHHHHHHHCCCcEEEEEE
Confidence 4788899999999999998655433
No 372
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=20.46 E-value=35 Score=28.15 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=18.0
Q ss_pred ccccccCCCceeeccCCCccchHHHH
Q 041164 15 LCSTCNQRKAALKRPKTLEQICRECF 40 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~~~~lC~~cf 40 (357)
-|.+||. +++. ++|.-||.-|-
T Consensus 30 hCp~Cg~---PLF~-KdG~v~CPvC~ 51 (131)
T COG1645 30 HCPKCGT---PLFR-KDGEVFCPVCG 51 (131)
T ss_pred hCcccCC---ccee-eCCeEECCCCC
Confidence 4999995 4444 89999999997
No 373
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=20.36 E-value=2.3e+02 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=20.8
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHH
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSEL 84 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~ 84 (357)
.+++.|+|...+|..|...+.+|..+
T Consensus 64 ~~~~~ivv~c~~g~~s~~~~~~l~~~ 89 (106)
T cd01519 64 SKDKELIFYCKAGVRSKAAAELARSL 89 (106)
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHc
Confidence 45678888888888888888888776
No 374
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=20.25 E-value=4.4e+02 Score=20.76 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=40.4
Q ss_pred CeeEEEEEecCCCCCCC----------hhhHHHHHHHHHHhCC-CeEEEeeccccCCC--HHHHHHHhCCCCCchhHHHH
Q 041164 91 GLDLFLLSIDEGISGYR----------DDSLQTVKRNEIQYGL-PLKIVSYKDLYGWT--MDEIVKVIGLKNNCTFCGVF 157 (357)
Q Consensus 91 g~~v~av~id~g~~~~~----------~~~~~~v~~~~~~lgi-~~~iv~~~~~~~~~--i~~~~~~~~~~~~c~~c~~~ 157 (357)
|.++.++++-.|..+.. ..-.....+.++.+|+ .++..++.+..-.. .+++
T Consensus 25 g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~---------------- 88 (128)
T PF02585_consen 25 GHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLPGWSWEEL---------------- 88 (128)
T ss_dssp T-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCTCHHHHHH----------------
T ss_pred CCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCcccccHHHH----------------
Confidence 78999998877754311 1123445667889999 77888776432211 2222
Q ss_pred HHHHHHHHHHHCCCCEEEcCCChh
Q 041164 158 RRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 158 r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
.+.+.++.++...+.|+|-+..+
T Consensus 89 -~~~l~~~i~~~~p~~V~t~~~~~ 111 (128)
T PF02585_consen 89 -VRDLEDLIREFRPDVVFTPDPDD 111 (128)
T ss_dssp -HHHHHHHHHHH-ESEEEEE-STT
T ss_pred -HHHHHHHHHHcCCCEEEECCCCC
Confidence 33466666777778887755433
No 375
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.17 E-value=3e+02 Score=21.16 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=26.6
Q ss_pred CEEEEEecCChhHHHHHHHHH-HHhhhCCCCeeEEEEEecC
Q 041164 62 ERIAIGASGGKDSTVLAFVLS-ELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~-~~~~~~~~g~~v~av~id~ 101 (357)
.||+++.-.|.-|+.++..-- ++.++++++.++...++|.
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~ 42 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDE 42 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecc
Confidence 378999999988888876444 3444444444666666654
No 376
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=20.03 E-value=3.9e+02 Score=21.17 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=38.0
Q ss_pred CCCCCCEEEEEec-CChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 57 LFKAGERIAIGAS-GGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 57 l~~~~~kvlVa~S-GG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
+++-...|||.+| .++|-...|.++.+..+... | .=.++.||=|. ...+++|+++.+.
T Consensus 15 LLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vk-G-~gT~~~vdCgd--------~e~kKLCKKlKv~ 73 (112)
T cd03067 15 LLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVK-G-QGTIAWIDCGD--------SESRKLCKKLKVD 73 (112)
T ss_pred HHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhc-C-ceeEEEEecCC--------hHHHHHHHHHccC
Confidence 3444556777665 45777888888887654432 2 33566778774 1257899999875
Done!