Query 041164
Match_columns 357
No_of_seqs 303 out of 2192
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wy5_A TILS, hypothetical UPF0 100.0 6.5E-40 2.2E-44 311.2 23.5 229 39-283 2-233 (317)
2 3a2k_A TRNA(Ile)-lysidine synt 100.0 1.9E-39 6.5E-44 322.7 22.3 227 45-283 2-231 (464)
3 1ni5_A Putative cell cycle pro 100.0 3.7E-37 1.3E-41 303.6 18.4 210 57-283 9-220 (433)
4 2der_A TRNA-specific 2-thiouri 99.9 1.4E-27 4.7E-32 230.9 2.3 206 57-270 13-233 (380)
5 2hma_A Probable tRNA (5-methyl 99.9 5E-27 1.7E-31 227.0 3.6 200 60-270 8-225 (376)
6 3k32_A Uncharacterized protein 99.9 4.5E-26 1.5E-30 202.6 8.7 171 62-261 7-179 (203)
7 2dpl_A GMP synthetase, GMP syn 99.9 1.4E-24 4.8E-29 204.6 18.6 203 38-270 4-228 (308)
8 3bl5_A Queuosine biosynthesis 99.9 3.7E-24 1.3E-28 191.8 14.6 172 61-246 3-187 (219)
9 3tqi_A GMP synthase [glutamine 99.9 2E-23 6.8E-28 210.2 13.8 172 61-248 230-409 (527)
10 1sur_A PAPS reductase; assimil 99.9 1.5E-23 5E-28 187.9 10.3 164 45-241 33-202 (215)
11 2c5s_A THII, probable thiamine 99.9 4.9E-23 1.7E-27 201.6 14.1 153 61-238 187-344 (413)
12 2pg3_A Queuosine biosynthesis 99.9 2.5E-23 8.5E-28 188.5 10.2 173 62-248 3-192 (232)
13 2ywb_A GMP synthase [glutamine 99.9 2.7E-22 9.1E-27 201.1 17.8 160 61-240 209-374 (503)
14 1k92_A Argininosuccinate synth 99.9 2.6E-21 8.8E-26 189.2 15.6 168 57-249 6-193 (455)
15 1kor_A Argininosuccinate synth 99.9 2.4E-21 8.3E-26 188.1 15.4 183 62-271 1-200 (400)
16 1zun_A Sulfate adenylyltransfe 99.8 3.7E-21 1.3E-25 182.3 12.9 181 45-241 36-226 (325)
17 2o8v_A Phosphoadenosine phosph 99.8 2.2E-21 7.5E-26 177.9 10.6 164 45-241 34-203 (252)
18 2e18_A NH(3)-dependent NAD(+) 99.8 2.4E-21 8.2E-26 178.2 10.7 161 42-239 7-172 (257)
19 3uow_A GMP synthetase; structu 99.8 2.1E-20 7E-25 189.1 17.4 187 44-251 241-441 (556)
20 2nz2_A Argininosuccinate synth 99.8 1.1E-20 3.8E-25 184.0 14.2 230 60-316 4-256 (413)
21 3p52_A NH(3)-dependent NAD(+) 99.8 1.8E-20 6.2E-25 171.2 13.9 160 44-238 13-175 (249)
22 3fiu_A NH(3)-dependent NAD(+) 99.8 2.7E-20 9.3E-25 170.1 12.7 169 41-241 13-189 (249)
23 2oq2_A Phosphoadenosine phosph 99.8 9E-20 3.1E-24 168.0 15.8 170 45-241 31-208 (261)
24 1gpm_A GMP synthetase, XMP ami 99.8 2.7E-20 9.1E-25 187.5 13.3 161 61-239 227-395 (525)
25 1xng_A NH(3)-dependent NAD(+) 99.8 9.7E-20 3.3E-24 168.4 15.5 163 46-239 10-175 (268)
26 1vl2_A Argininosuccinate synth 99.8 2.2E-19 7.6E-24 173.8 14.5 162 61-249 14-192 (421)
27 2vxo_A GMP synthase [glutamine 99.8 6.4E-20 2.2E-24 189.3 8.7 191 45-247 227-443 (697)
28 2wsi_A FAD synthetase; transfe 99.8 3.6E-19 1.2E-23 167.4 12.2 184 16-241 7-215 (306)
29 2goy_A Adenosine phosphosulfat 99.8 8.5E-18 2.9E-22 155.9 15.1 170 45-241 43-217 (275)
30 1wxi_A NH(3)-dependent NAD(+) 99.7 9.2E-16 3.2E-20 142.0 15.0 174 38-238 20-202 (275)
31 1kqp_A NAD+ synthase, NH(3)-de 99.6 1.4E-15 4.8E-20 140.6 14.3 171 40-238 21-199 (271)
32 1vbk_A Hypothetical protein PH 99.6 1E-15 3.5E-20 143.9 9.2 119 62-237 180-307 (307)
33 3q4g_A NH(3)-dependent NAD(+) 99.6 7.6E-15 2.6E-19 135.6 13.0 174 37-238 20-211 (279)
34 3dpi_A NAD+ synthetase; ssgcid 99.6 1.4E-14 4.9E-19 133.9 12.0 169 41-238 30-211 (285)
35 3n05_A NH(3)-dependent NAD(+) 99.5 2.2E-14 7.6E-19 146.4 10.9 163 41-236 310-473 (590)
36 3fwk_A FMN adenylyltransferase 99.4 5.2E-12 1.8E-16 117.2 14.5 144 61-241 58-218 (308)
37 3ilv_A Glutamine-dependent NAD 99.2 9.7E-11 3.3E-15 120.3 13.8 167 44-238 290-505 (634)
38 3sdb_A Glutamine-dependent NAD 99.2 3.5E-11 1.2E-15 124.3 10.4 166 44-235 348-521 (680)
39 3rjz_A N-type ATP pyrophosphat 99.2 1.2E-10 3.9E-15 104.8 11.8 136 62-241 5-144 (237)
40 1jgt_A Beta-lactam synthetase; 99.0 2.4E-09 8.2E-14 107.3 12.2 133 39-184 221-354 (513)
41 1ct9_A Asparagine synthetase B 98.9 7.2E-09 2.4E-13 104.8 14.1 136 42-184 209-354 (553)
42 1q15_A CARA; CMPR, (2S,5S)-5-c 98.9 4E-09 1.4E-13 105.5 11.6 132 40-184 219-351 (503)
43 4f4h_A Glutamine dependent NAD 98.7 2.2E-07 7.6E-12 94.0 14.8 171 35-236 279-453 (565)
44 3hgm_A Universal stress protei 96.0 0.015 5.2E-07 46.7 7.1 97 62-181 3-121 (147)
45 1jmv_A USPA, universal stress 95.8 0.051 1.8E-06 43.3 9.3 93 62-179 3-111 (141)
46 3fdx_A Putative filament prote 95.8 0.024 8.1E-07 45.4 7.1 96 62-180 2-116 (143)
47 3tnj_A Universal stress protei 95.4 0.064 2.2E-06 43.2 8.6 96 61-182 6-121 (150)
48 2z08_A Universal stress protei 95.4 0.14 4.7E-06 40.5 10.4 93 62-180 3-109 (137)
49 3loq_A Universal stress protei 95.2 0.23 7.8E-06 44.9 12.4 95 60-182 169-263 (294)
50 3dlo_A Universal stress protei 95.0 0.29 9.9E-06 39.9 11.6 96 62-181 25-128 (155)
51 3idf_A USP-like protein; unive 95.0 0.12 4.2E-06 40.8 9.0 40 62-103 2-42 (138)
52 3s3t_A Nucleotide-binding prot 94.9 0.29 9.9E-06 38.9 11.1 39 62-102 6-44 (146)
53 1tq8_A Hypothetical protein RV 94.8 0.28 9.5E-06 40.4 10.9 97 59-182 15-131 (163)
54 2dum_A Hypothetical protein PH 94.6 0.31 1.1E-05 40.0 10.8 38 61-100 5-42 (170)
55 1mjh_A Protein (ATP-binding do 94.0 0.43 1.5E-05 38.7 10.3 38 61-100 5-42 (162)
56 3fg9_A Protein of universal st 93.5 0.6 2.1E-05 37.6 10.2 96 61-181 15-130 (156)
57 3mt0_A Uncharacterized protein 93.2 0.35 1.2E-05 43.6 9.2 97 60-181 133-248 (290)
58 3mt0_A Uncharacterized protein 92.8 0.77 2.6E-05 41.2 10.8 96 59-181 5-100 (290)
59 3nbm_A PTS system, lactose-spe 92.6 0.36 1.2E-05 37.4 7.1 69 61-131 6-87 (108)
60 1q77_A Hypothetical protein AQ 91.7 1 3.5E-05 35.3 9.0 37 62-100 5-41 (138)
61 2gm3_A Unknown protein; AT3G01 91.2 1.3 4.5E-05 36.3 9.6 39 62-100 6-54 (175)
62 3olq_A Universal stress protei 90.6 0.91 3.1E-05 41.2 8.8 99 60-181 155-277 (319)
63 3n0v_A Formyltetrahydrofolate 85.2 18 0.0006 32.8 13.6 107 42-181 65-177 (286)
64 3o1l_A Formyltetrahydrofolate 84.3 11 0.00037 34.5 11.8 88 61-181 105-192 (302)
65 3loq_A Universal stress protei 84.2 1.9 6.6E-05 38.6 6.7 99 59-183 20-136 (294)
66 3lou_A Formyltetrahydrofolate 83.2 22 0.00074 32.3 13.3 88 61-181 95-182 (292)
67 2qv5_A AGR_C_5032P, uncharacte 82.3 9.7 0.00033 34.0 10.3 117 41-188 109-228 (261)
68 3cis_A Uncharacterized protein 82.2 7.4 0.00025 35.0 9.9 40 61-102 171-210 (309)
69 3olq_A Universal stress protei 81.2 5.5 0.00019 35.8 8.6 97 61-182 7-123 (319)
70 2nly_A BH1492 protein, diverge 79.8 7.3 0.00025 34.5 8.6 111 41-182 82-196 (245)
71 3ab8_A Putative uncharacterize 78.2 4.6 0.00016 35.3 6.9 66 60-128 153-218 (268)
72 2xzm_N RPS29E; ribosome, trans 76.2 2.2 7.5E-05 28.6 3.1 30 13-44 17-46 (55)
73 3u5c_d S36, YS29, 40S ribosoma 75.9 2.7 9.3E-05 28.3 3.4 29 14-44 19-47 (56)
74 3zqu_A Probable aromatic acid 75.4 4.6 0.00016 34.9 5.8 36 60-98 3-38 (209)
75 3cis_A Uncharacterized protein 75.2 15 0.00053 32.7 9.7 39 61-101 19-57 (309)
76 3ab8_A Putative uncharacterize 74.7 9.4 0.00032 33.3 7.9 37 62-100 1-37 (268)
77 3j20_P 30S ribosomal protein S 73.9 3.6 0.00012 27.7 3.6 29 14-44 19-47 (56)
78 3da8_A Probable 5'-phosphoribo 72.5 33 0.0011 29.6 10.6 88 62-181 13-100 (215)
79 3av3_A Phosphoribosylglycinami 71.9 47 0.0016 28.4 12.1 89 63-181 5-93 (212)
80 3tqr_A Phosphoribosylglycinami 70.9 45 0.0015 28.7 11.1 89 62-181 6-94 (215)
81 3p9x_A Phosphoribosylglycinami 70.4 48 0.0017 28.4 11.1 90 62-181 3-92 (211)
82 1fs5_A Glucosamine-6-phosphate 70.2 24 0.00082 31.1 9.6 70 61-130 32-106 (266)
83 2bkx_A Glucosamine-6-phosphate 69.9 21 0.00072 30.9 9.0 69 62-130 28-101 (242)
84 3hn6_A Glucosamine-6-phosphate 69.0 43 0.0015 30.1 11.1 66 61-126 53-123 (289)
85 1e2b_A Enzyme IIB-cellobiose; 68.9 7.9 0.00027 29.4 5.2 39 62-102 4-42 (106)
86 2vqe_N 30S ribosomal protein S 68.1 4.8 0.00016 27.6 3.3 28 14-45 22-49 (61)
87 3obi_A Formyltetrahydrofolate 67.2 26 0.00088 31.7 9.1 89 61-181 89-177 (288)
88 2ejb_A Probable aromatic acid 66.1 9.3 0.00032 32.4 5.6 34 62-98 2-35 (189)
89 2ywr_A Phosphoribosylglycinami 65.9 63 0.0022 27.6 11.3 88 63-180 3-90 (216)
90 3iz6_N 40S ribosomal protein S 65.7 3.9 0.00013 27.5 2.4 28 14-43 19-46 (56)
91 3lqk_A Dipicolinate synthase s 64.9 6.5 0.00022 33.7 4.4 41 60-103 6-47 (201)
92 2l2q_A PTS system, cellobiose- 64.5 17 0.00059 27.5 6.4 67 62-130 5-84 (109)
93 3auf_A Glycinamide ribonucleot 64.1 63 0.0022 28.0 10.8 90 62-181 23-112 (229)
94 3qjg_A Epidermin biosynthesis 63.7 8.7 0.0003 32.2 4.8 39 62-103 6-44 (175)
95 3kcq_A Phosphoribosylglycinami 63.7 35 0.0012 29.4 8.9 87 60-181 7-93 (215)
96 3nrb_A Formyltetrahydrofolate 63.5 31 0.0011 31.1 8.9 107 43-181 64-176 (287)
97 1qzu_A Hypothetical protein MD 62.5 6.5 0.00022 33.8 3.9 40 60-101 18-57 (206)
98 3vdp_A Recombination protein R 62.4 5.2 0.00018 34.5 3.2 21 290-310 67-87 (212)
99 3e15_A Glucose-6-phosphate 1-d 61.7 61 0.0021 29.6 10.6 80 44-124 42-124 (312)
100 1g63_A Epidermin modifying enz 61.3 7.1 0.00024 32.9 3.9 39 62-103 3-41 (181)
101 1p3y_1 MRSD protein; flavoprot 61.0 6.8 0.00023 33.4 3.7 35 61-98 8-42 (194)
102 1mvl_A PPC decarboxylase athal 60.6 10 0.00034 32.7 4.8 37 61-101 19-55 (209)
103 3mcu_A Dipicolinate synthase, 60.0 9.1 0.00031 32.9 4.4 40 60-102 4-44 (207)
104 3u7q_B Nitrogenase molybdenum- 59.3 92 0.0032 30.5 12.2 102 46-185 349-453 (523)
105 4ds3_A Phosphoribosylglycinami 57.7 89 0.003 26.6 11.5 90 62-181 8-97 (209)
106 1wv9_A Rhodanese homolog TT165 57.1 14 0.00046 26.8 4.5 40 58-106 51-90 (94)
107 1vdd_A Recombination protein R 56.1 6.9 0.00023 34.1 2.9 21 290-310 53-73 (228)
108 1dl6_A Transcription factor II 55.2 5.8 0.0002 26.8 1.9 28 11-39 9-36 (58)
109 2p09_A A non-biological ATP bi 55.2 9.2 0.00031 26.0 2.8 32 14-45 23-57 (81)
110 1ne7_A Glucosamine-6-phosphate 53.1 63 0.0022 28.8 9.2 70 61-130 32-106 (289)
111 2eqg_A Tumor necrosis factor, 51.7 11 0.00036 23.8 2.4 26 17-42 12-37 (49)
112 1meo_A Phosophoribosylglycinam 51.2 1.1E+02 0.0037 26.0 9.9 88 63-180 2-89 (209)
113 1x61_A Thyroid receptor intera 50.7 8.5 0.00029 26.5 2.3 31 15-45 35-66 (72)
114 2d8x_A Protein pinch; LIM doma 50.6 7.1 0.00024 26.8 1.8 30 15-44 33-63 (70)
115 3lor_A Thiol-disulfide isomera 48.4 89 0.0031 24.0 8.5 66 61-128 30-99 (160)
116 1sbz_A Probable aromatic acid 47.0 26 0.00089 29.8 5.1 34 63-98 2-35 (197)
117 2l4z_A DNA endonuclease RBBP8, 46.4 8.5 0.00029 30.0 1.8 29 15-43 90-121 (123)
118 2eqe_A Tumor necrosis factor, 45.0 15 0.00053 23.2 2.4 19 26-44 25-43 (48)
119 2cur_A Skeletal muscle LIM-pro 44.6 13 0.00044 25.3 2.4 30 15-44 33-63 (69)
120 1jkx_A GART;, phosphoribosylgl 42.7 60 0.0021 27.7 6.9 89 63-181 2-90 (212)
121 3foj_A Uncharacterized protein 42.4 21 0.00073 26.1 3.5 38 58-103 53-90 (100)
122 2dar_A PDZ and LIM domain prot 41.9 11 0.00039 27.2 1.8 30 15-44 53-83 (90)
123 2k0z_A Uncharacterized protein 41.5 24 0.00082 26.4 3.7 41 58-106 53-93 (110)
124 2dj7_A Actin-binding LIM prote 41.0 6.8 0.00023 28.0 0.4 14 30-43 59-72 (80)
125 2kae_A GATA-type transcription 40.8 19 0.00064 25.4 2.7 36 11-46 6-43 (71)
126 3g5j_A Putative ATP/GTP bindin 40.4 11 0.00038 29.0 1.7 37 59-103 86-124 (134)
127 3eme_A Rhodanese-like domain p 40.3 23 0.00079 26.0 3.4 38 58-103 53-90 (103)
128 2hy5_A Putative sulfurtransfer 39.8 90 0.0031 24.0 7.0 64 63-129 2-79 (130)
129 1f6y_A 5-methyltetrahydrofolat 39.3 2E+02 0.0068 25.3 10.5 64 61-130 91-161 (262)
130 3mc3_A DSRE/DSRF-like family p 38.5 91 0.0031 24.2 6.9 41 62-104 16-59 (134)
131 1nyp_A Pinch protein; LIM doma 38.5 10 0.00035 25.6 1.0 29 15-43 33-62 (66)
132 3eyt_A Uncharacterized protein 38.1 1.3E+02 0.0046 22.9 8.0 66 61-128 28-97 (158)
133 3f6q_B LIM and senescent cell 38.0 11 0.00037 25.7 1.1 29 15-43 41-70 (72)
134 1x62_A C-terminal LIM domain p 37.7 12 0.0004 26.4 1.3 30 15-44 43-73 (79)
135 2d8z_A Four and A half LIM dom 37.5 14 0.00049 25.1 1.7 29 15-43 33-62 (70)
136 2ri0_A Glucosamine-6-phosphate 37.3 1.9E+02 0.0065 24.5 9.6 61 65-128 31-95 (234)
137 4gat_A Nitrogen regulatory pro 36.5 34 0.0012 23.6 3.4 34 13-46 9-43 (66)
138 3ha9_A Uncharacterized thiored 36.2 1.5E+02 0.0051 22.9 9.3 68 60-128 36-116 (165)
139 3gk5_A Uncharacterized rhodane 36.0 35 0.0012 25.3 3.9 38 58-103 52-89 (108)
140 3pdi_B Nitrogenase MOFE cofact 36.0 2E+02 0.007 27.4 10.3 48 47-102 299-347 (458)
141 1vee_A Proline-rich protein fa 35.3 1.1E+02 0.0039 23.3 7.0 39 59-104 72-110 (134)
142 1x4k_A Skeletal muscle LIM-pro 35.3 15 0.0005 25.2 1.4 29 15-43 35-64 (72)
143 3dfx_A Trans-acting T-cell-spe 34.8 38 0.0013 23.2 3.4 36 13-48 7-43 (63)
144 1wyh_A SLIM 2, skeletal muscle 34.3 15 0.00053 25.0 1.4 29 15-43 35-64 (72)
145 2k0a_A PRE-mRNA-splicing facto 34.3 19 0.00066 27.1 2.0 39 290-328 56-98 (109)
146 3czc_A RMPB; alpha/beta sandwi 34.1 75 0.0026 23.8 5.5 26 62-87 19-45 (110)
147 2cuq_A Four and A half LIM dom 33.2 20 0.00068 25.0 1.9 29 15-43 43-72 (80)
148 3dm5_A SRP54, signal recogniti 33.0 1.9E+02 0.0066 27.6 9.4 56 65-127 105-160 (443)
149 1x64_A Alpha-actinin-2 associa 33.0 14 0.00048 26.6 1.1 28 15-43 53-82 (89)
150 1x3h_A Leupaxin; paxillin fami 32.8 23 0.0008 24.7 2.2 30 15-44 43-73 (80)
151 2ds5_A CLPX, ATP-dependent CLP 32.6 13 0.00044 24.4 0.7 28 14-41 12-41 (51)
152 1m3v_A FLIN4, fusion of the LI 32.6 20 0.00068 27.6 2.0 30 15-44 34-66 (122)
153 2dlo_A Thyroid receptor-intera 32.5 27 0.00092 24.5 2.5 30 15-44 43-74 (81)
154 1x4l_A Skeletal muscle LIM-pro 32.4 16 0.00056 25.0 1.3 28 15-42 37-65 (72)
155 3do6_A Formate--tetrahydrofola 32.3 1.7E+02 0.0058 28.5 8.6 127 58-186 309-460 (543)
156 3flh_A Uncharacterized protein 32.1 47 0.0016 25.3 4.1 38 58-103 68-107 (124)
157 3erw_A Sporulation thiol-disul 32.0 1.6E+02 0.0053 21.9 7.9 64 60-128 33-99 (145)
158 2ysj_A Tripartite motif-contai 31.8 66 0.0022 21.0 4.4 32 13-45 20-52 (63)
159 1y89_A DEVB protein; structura 31.7 1.5E+02 0.0052 25.4 7.9 65 61-125 28-96 (238)
160 2fsx_A RV0390, COG0607: rhodan 31.5 48 0.0016 26.1 4.2 41 59-106 78-118 (148)
161 1gnf_A Transcription factor GA 31.5 48 0.0016 21.1 3.3 30 291-320 4-42 (46)
162 1ovx_A ATP-dependent CLP prote 31.1 13 0.00044 25.9 0.5 28 14-41 19-48 (67)
163 1g47_A Pinch protein; LIM doma 31.0 14 0.00047 25.7 0.7 29 15-43 41-70 (77)
164 1j2o_A FLIN2, fusion of rhombo 30.9 29 0.001 26.2 2.7 31 15-45 32-65 (114)
165 1iv3_A 2-C-methyl-D-erythritol 30.6 1.5E+02 0.0051 23.9 6.9 61 70-132 69-131 (152)
166 1mio_B Nitrogenase molybdenum 30.5 3.6E+02 0.012 25.6 11.6 72 46-128 297-369 (458)
167 1gmx_A GLPE protein; transfera 30.4 1.1E+02 0.0038 22.3 5.9 38 58-103 55-93 (108)
168 2gs3_A PHGPX, GPX-4, phospholi 29.5 1.7E+02 0.0059 23.4 7.5 68 60-128 48-118 (185)
169 1x63_A Skeletal muscle LIM-pro 29.4 21 0.00072 25.1 1.5 29 15-43 45-74 (82)
170 1pft_A TFIIB, PFTFIIBN; N-term 29.2 17 0.00057 23.3 0.8 25 14-39 6-30 (50)
171 3v2d_5 50S ribosomal protein L 28.9 23 0.00079 24.0 1.5 24 288-311 27-51 (60)
172 3gkn_A Bacterioferritin comigr 28.6 1.4E+02 0.0049 23.0 6.7 59 61-128 35-97 (163)
173 3iwh_A Rhodanese-like domain p 28.5 69 0.0024 23.6 4.4 38 58-103 53-90 (103)
174 2ggt_A SCO1 protein homolog, m 28.3 1.3E+02 0.0045 23.1 6.4 64 61-129 23-94 (164)
175 2d8v_A Zinc finger FYVE domain 28.2 29 0.00099 24.0 1.9 28 15-43 10-38 (67)
176 4avf_A Inosine-5'-monophosphat 28.1 2.5E+02 0.0086 27.0 9.5 78 64-177 220-298 (490)
177 2zjr_Z 50S ribosomal protein L 27.8 26 0.00088 23.7 1.6 25 287-311 26-51 (60)
178 1zfo_A LAsp-1; LIM domain, zin 27.4 15 0.00052 21.1 0.3 28 13-40 3-31 (31)
179 3re3_A 2-C-methyl-D-erythritol 27.3 1.5E+02 0.0053 24.1 6.5 62 70-133 75-138 (162)
180 2d8y_A Eplin protein; LIM doma 27.1 25 0.00086 25.3 1.6 29 15-43 44-73 (91)
181 1gx1_A 2-C-methyl-D-erythritol 27.0 1.6E+02 0.0055 24.0 6.5 62 70-133 70-133 (160)
182 3lmz_A Putative sugar isomeras 27.0 2.8E+02 0.0097 23.3 9.0 17 110-126 62-78 (257)
183 2cor_A Pinch protein; LIM doma 27.0 12 0.0004 26.5 -0.3 27 15-42 43-70 (79)
184 2egq_A FHL1 protein; LIM domai 26.8 26 0.00088 24.2 1.5 27 15-41 48-75 (77)
185 1x6a_A LIMK-2, LIM domain kina 26.3 48 0.0016 23.1 3.0 30 15-44 43-75 (81)
186 3pdi_A Nitrogenase MOFE cofact 26.3 3.3E+02 0.011 26.2 9.9 47 46-99 317-363 (483)
187 2vut_I AREA, nitrogen regulato 26.2 58 0.002 20.3 2.9 30 293-322 3-41 (43)
188 3glc_A Aldolase LSRF; TIM barr 25.9 3.3E+02 0.011 24.4 9.2 72 91-180 138-212 (295)
189 1dv5_A APO-DCP, APO-D-alanyl c 25.8 26 0.00089 24.6 1.4 20 69-88 33-52 (80)
190 3qm3_A Fructose-bisphosphate a 25.5 3.9E+02 0.013 24.7 9.8 93 61-173 56-169 (357)
191 3ovp_A Ribulose-phosphate 3-ep 25.0 1.5E+02 0.0052 25.4 6.5 63 47-121 103-167 (228)
192 1tq1_A AT5G66040, senescence-a 24.9 74 0.0025 24.3 4.1 38 58-103 79-117 (129)
193 1t0a_A 2C-methyl-D-erythritol 24.8 1.5E+02 0.0053 24.1 6.0 63 70-134 71-135 (159)
194 1dos_A Aldolase class II; lyas 24.4 3.2E+02 0.011 25.3 8.9 76 77-172 89-170 (358)
195 2obi_A PHGPX, GPX-4, phospholi 24.3 2.2E+02 0.0075 22.6 7.2 67 61-128 47-116 (183)
196 1wig_A KIAA1808 protein; LIM d 24.2 21 0.00073 24.6 0.7 28 15-42 33-62 (73)
197 3h2y_A GTPase family protein; 23.7 3.1E+02 0.011 25.1 8.9 154 14-194 5-182 (368)
198 3f0d_A 2-C-methyl-D-erythritol 23.7 1.6E+02 0.0055 24.5 6.0 60 70-133 92-155 (183)
199 3nhv_A BH2092 protein; alpha-b 23.7 1.1E+02 0.0036 24.0 4.9 38 58-103 69-108 (144)
200 2iyb_E Testin, TESS, TES; LIM 23.6 27 0.00091 23.4 1.1 27 15-41 34-62 (65)
201 2rli_A SCO2 protein homolog, m 23.4 2.1E+02 0.0072 22.1 6.8 64 61-129 26-97 (171)
202 2rgt_A Fusion of LIM/homeobox 23.1 39 0.0013 27.5 2.2 30 15-44 35-64 (169)
203 2gqw_A Ferredoxin reductase; f 23.1 3.1E+02 0.01 25.2 8.9 62 59-127 143-206 (408)
204 3u5r_E Uncharacterized protein 23.0 2.2E+02 0.0076 23.6 7.2 67 61-128 58-128 (218)
205 1tvm_A PTS system, galactitol- 23.0 1.5E+02 0.005 22.3 5.4 37 62-100 22-59 (113)
206 1a7i_A QCRP2 (LIM1); LIM domai 22.8 17 0.00058 25.6 -0.1 29 15-43 36-65 (81)
207 3ibs_A Conserved hypothetical 22.8 3E+02 0.01 22.3 8.0 66 61-129 111-196 (218)
208 2ysl_A Tripartite motif-contai 22.8 76 0.0026 21.3 3.4 32 13-45 20-52 (73)
209 2k6v_A Putative cytochrome C o 22.6 2.6E+02 0.0091 21.4 8.9 65 60-129 34-105 (172)
210 3pwf_A Rubrerythrin; non heme 22.6 81 0.0028 25.9 4.1 23 289-311 136-161 (170)
211 3o3m_A Alpha subunit 2-hydroxy 22.2 4.8E+02 0.016 24.2 13.6 135 61-264 255-399 (408)
212 3inp_A D-ribulose-phosphate 3- 22.2 1.2E+02 0.0043 26.4 5.4 95 47-178 125-224 (246)
213 2jtq_A Phage shock protein E; 22.0 94 0.0032 21.5 3.9 26 59-84 39-64 (85)
214 2l3k_A Rhombotin-2, linker, LI 22.0 43 0.0015 25.6 2.1 31 15-45 38-70 (123)
215 2b5x_A YKUV protein, TRXY; thi 21.8 2.5E+02 0.0084 20.8 7.6 65 61-128 29-95 (148)
216 2pmp_A 2-C-methyl-D-erythritol 21.7 1.5E+02 0.0051 24.2 5.3 63 70-134 72-136 (160)
217 4a1f_A DNAB helicase, replicat 21.5 1.9E+02 0.0066 26.4 6.8 63 111-181 144-207 (338)
218 2hhg_A Hypothetical protein RP 21.2 1.2E+02 0.0041 23.2 4.7 39 58-103 83-121 (139)
219 2k4x_A 30S ribosomal protein S 21.1 30 0.001 22.9 0.8 35 3-40 9-43 (55)
220 3ung_C CMR2DHD; ferredoxin fol 20.9 44 0.0015 33.9 2.3 41 12-52 266-316 (693)
221 1qxn_A SUD, sulfide dehydrogen 20.8 1.2E+02 0.004 23.5 4.5 39 58-103 79-117 (137)
222 3mmz_A Putative HAD family hyd 20.7 1.7E+02 0.0058 23.4 5.8 59 91-184 55-116 (176)
223 1vkr_A Mannitol-specific PTS s 20.7 1.2E+02 0.0041 23.4 4.5 38 61-100 13-52 (125)
224 3l21_A DHDPS, dihydrodipicolin 20.6 3.6E+02 0.012 24.0 8.4 76 62-143 85-164 (304)
225 2xjy_A Rhombotin-2; oncoprotei 20.3 48 0.0016 25.5 2.1 30 15-44 31-63 (131)
226 3mn1_A Probable YRBI family ph 20.3 2E+02 0.0069 23.2 6.2 60 91-184 62-124 (189)
No 1
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=100.00 E-value=6.5e-40 Score=311.24 Aligned_cols=229 Identities=22% Similarity=0.199 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCee-EEEEEecCCCCCCChhhHHHHHHH
Q 041164 39 CFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLD-LFLLSIDEGISGYRDDSLQTVKRN 117 (357)
Q Consensus 39 cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~-v~av~id~g~~~~~~~~~~~v~~~ 117 (357)
|....+.++|.++|.+++++.++++|+||+|||+||++||+++.++.+. +|++ +.++|||||++..++++.++++++
T Consensus 2 ~~~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~--~g~~~v~av~vd~g~r~~s~~~~~~v~~~ 79 (317)
T 1wy5_A 2 NPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY--FSLKEVALAHFNHMLRESAERDEEFCKEF 79 (317)
T ss_dssp CHHHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT--TTCSEEEEEEEECCSSTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH--cCCCEEEEEEEECCCCcccHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999987443 4788 999999999986567888999999
Q ss_pred HHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcc
Q 041164 118 EIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIA 197 (357)
Q Consensus 118 ~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~ 197 (357)
|+.+|+|+++++++. ..+... ...++|..|+.+||.++.++|++.|+++|+||||+||++||+|+++++|++.
T Consensus 80 a~~lgi~~~v~~~~~------~~~~~~-~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~ 152 (317)
T 1wy5_A 80 AKERNMKIFVGKEDV------RAFAKE-NRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGL 152 (317)
T ss_dssp HHHHTCCEEEEECCH------HHHHHH-TTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCcEEEEEEec------hhhhcc-CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCc
Confidence 999999999998752 233322 3457888899999999999999999999999999999999999999999873
Q ss_pred -ccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHH-HHHHHHHHhCChhHHHHHH
Q 041164 198 -RLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAR-EFIKDLERLRPRAILDIIK 275 (357)
Q Consensus 198 -~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir-~~l~~Le~~~p~~~~~i~~ 275 (357)
.+..+.+. . ..++|||++++++||+. |++.+|+||+.|+||.+..+.|+++| +++|.|++.||++..++++
T Consensus 153 ~gl~~~~~~----~--~~iirPLl~~~k~eI~~-~~~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~~ 225 (317)
T 1wy5_A 153 DGLIGFLPK----E--EVIRRPLYYVKRSEIEE-YAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRINENLEDTFLK 225 (317)
T ss_dssp HHHHCSCSE----E--TTEECTTTTCCHHHHHH-HHHHTTCCCCCCGGGGTCCHHHHHHHHTHHHHHHHHCTTHHHHHHH
T ss_pred ccccCCCCC----C--CeEECCCccCCHHHHHH-HHHHcCCCeeECCCCCCCccHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 34444331 1 25799999999999999 99999999999999999999999999 5999999999999999999
Q ss_pred hhhhcccc
Q 041164 276 SGENFRIS 283 (357)
Q Consensus 276 t~~~l~~~ 283 (357)
++++++..
T Consensus 226 ~~~~~~~~ 233 (317)
T 1wy5_A 226 MVKVLRAE 233 (317)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988854
No 2
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.9e-39 Score=322.73 Aligned_cols=227 Identities=19% Similarity=0.204 Sum_probs=198.6
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC-CChhhHHHHHHHHHHhCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG-YRDDSLQTVKRNEIQYGL 123 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~-~~~~~~~~v~~~~~~lgi 123 (357)
.++|.++|.+++|+.++++|+||+|||+||++||++|.++.+. .|+++.++|||||+++ .++++.++++++|+.+|+
T Consensus 2 ~~kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~--~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi 79 (464)
T 3a2k_A 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDE--WKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRI 79 (464)
T ss_dssp CSHHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHT--TTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHH--cCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCC
Confidence 3589999999999999999999999999999999999997654 3889999999999973 456778999999999999
Q ss_pred CeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcc-ccccc
Q 041164 124 PLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIA-RLSRC 202 (357)
Q Consensus 124 ~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~-~l~~~ 202 (357)
|+++++++. ..+.. ....++|..|+.+||.+|.++|++.|+++|+||||+||++||+|++++||++. .+..|
T Consensus 80 ~~~v~~~~~------~~~~~-~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm 152 (464)
T 3a2k_A 80 LCETAQIDV------PAFQR-SAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGI 152 (464)
T ss_dssp EEEEEECCC------HHHHT-TTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCS
T ss_pred cEEEEEech------hhhhh-ccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCC
Confidence 999998853 22222 23467899999999999999999999999999999999999999999999885 35656
Q ss_pred cccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHH-HHHHHHHHhCChhHHHHHHhhhhcc
Q 041164 203 TLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAR-EFIKDLERLRPRAILDIIKSGENFR 281 (357)
Q Consensus 203 ~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir-~~l~~Le~~~p~~~~~i~~t~~~l~ 281 (357)
.+.... +...++|||++++++||.. |++.+|+||++|+||++..+.|+++| +++|.|++.||++..+++++++.++
T Consensus 153 ~~~~~~--~~~~iiRPLl~~~k~eI~~-ya~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~a~~~~ 229 (464)
T 3a2k_A 153 PVKRPF--HGGYLIRPFLAVSRAEIEA-YCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMA 229 (464)
T ss_dssp CSEEEC--SSSEEECGGGGSCHHHHHH-HHHHTCCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CccccC--CCCEEECCCccCcHHHHHH-HHHHcCCCeEECCCCCCccchHHHHHHHHHHHHHHHCchHHHHHHHHHHHHH
Confidence 554322 2256899999999999999 99999999999999999999999999 7999999999999999999998887
Q ss_pred cc
Q 041164 282 IS 283 (357)
Q Consensus 282 ~~ 283 (357)
..
T Consensus 230 ~~ 231 (464)
T 3a2k_A 230 ED 231 (464)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 3
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=100.00 E-value=3.7e-37 Score=303.65 Aligned_cols=210 Identities=21% Similarity=0.193 Sum_probs=183.4
Q ss_pred CCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCC
Q 041164 57 LFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGW 136 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~ 136 (357)
++.++++|+||+|||+||++||++|.++..+. .|+++.++|||||++.+++++.++++++|+.+|+|+++++++..
T Consensus 9 ~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~~--- 84 (433)
T 1ni5_A 9 QLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLA--- 84 (433)
T ss_dssp HHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCC---
T ss_pred hcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecCC---
Confidence 36778999999999999999999999875442 38999999999999877777889999999999999999988642
Q ss_pred CHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc-cccccccccCCCCCccc
Q 041164 137 TMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR-LSRCTLITTGEDGPIPR 215 (357)
Q Consensus 137 ~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~-l~~~~~~~~~~~~~i~~ 215 (357)
....++|..|+.+||.+|.++|+ ++++|+||||+||++||+|++++||++.. +..|.+..+. +...+
T Consensus 85 --------~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~gm~~~~~~--~~~~i 152 (433)
T 1ni5_A 85 --------QEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEF--AGTRL 152 (433)
T ss_dssp --------CSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEEEE--TTEEE
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHHHHHHHHHcCCCcccccCCCCcccc--CCceE
Confidence 12357788899999999999986 49999999999999999999999998754 6555554321 23678
Q ss_pred cccCCcCCHHHHHHHHHHHcCCcccccCCCCCChhhHHHHH-HHHHHHHHhCChhHHHHHHhhhhcccc
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAR-EFIKDLERLRPRAILDIIKSGENFRIS 283 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~~~r~~ir-~~l~~Le~~~p~~~~~i~~t~~~l~~~ 283 (357)
+|||++++++||.. |++.+|+||++|+||++..+.|+++| +++|.|++.||++..++.++++.++..
T Consensus 153 iRPLl~~~k~eI~~-y~~~~gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~~~~~~~~ 220 (433)
T 1ni5_A 153 IRPLLARTRGELVQ-WARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQ 220 (433)
T ss_dssp ECGGGSCCHHHHHH-HHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred EccCccCCHHHHHH-HHHHcCCCeEECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999 899999999999999999999888743
No 4
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.93 E-value=1.4e-27 Score=230.93 Aligned_cols=206 Identities=19% Similarity=0.122 Sum_probs=142.6
Q ss_pred CCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC------ChhhHHHHHHHHHHhCCCeEEEee
Q 041164 57 LFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY------RDDSLQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~------~~~~~~~v~~~~~~lgi~~~iv~~ 130 (357)
|-.++++|+||+|||+||+++|++|++. |++|.++|++++.... +.++.+.++++|+.+|||++++++
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~~~------G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQQ------GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHTT------CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHc------CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4456789999999999999999999986 8999999999986531 356688999999999999999999
Q ss_pred ccccC-----CCHHHHHHHhCCCCCchhHHHH-HHHHHHHHHHH-CCCCEEEcCCChhHHHHHHHHHHHccCcccccccc
Q 041164 131 KDLYG-----WTMDEIVKVIGLKNNCTFCGVF-RRQALDRGASL-LKVDKIATGHNADDIAETVLLNILRGDIARLSRCT 203 (357)
Q Consensus 131 ~~~~~-----~~i~~~~~~~~~~~~c~~c~~~-r~~~l~~~A~~-~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~ 203 (357)
++.|. ..++++. ....++||..|+.. |+..+.++|.+ +|+++|+|||+++|.+++..+++++|.+..-....
T Consensus 87 ~~~f~~~v~~~~~~ey~-~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy 165 (380)
T 2der_A 87 AAEYWDNVFELFLAEYK-AGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSY 165 (380)
T ss_dssp HHHHHHHTHHHHHHHHH-TTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGG
T ss_pred cHHHHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhcccccccccce
Confidence 86652 1223332 13468999999885 88999999999 99999999999999876666666666532110000
Q ss_pred ccccCCC-CCccccccCCcCCHHHHHHHHHHHcCCcccccCCCCCChh-hHHHHHHHHHHHHHhCChhH
Q 041164 204 LITTGED-GPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTECIYSPNA-YRGFAREFIKDLERLRPRAI 270 (357)
Q Consensus 204 ~~~~~~~-~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~~~~~~~~-~r~~ir~~l~~Le~~~p~~~ 270 (357)
.+..... ....+++||.+++|+||+. ||+.+||++..++++...-. -+..+++||..++...|+.+
T Consensus 166 ~L~~l~~~~l~~~i~PL~~~~K~eVr~-~A~~~Gl~~~~kp~s~~~cf~~~~~~~~fL~~~~~~~pG~~ 233 (380)
T 2der_A 166 FLYTLSHEQIAQSLFPVGELEKPQVRK-IAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKI 233 (380)
T ss_dssp GGSSCCHHHHHHEECCGGGSCHHHHHH-HHHHTTCC----------------CHHHHHHTTSCCCCCEE
T ss_pred eecCCChhhcceeEccCCCCCHHHHHH-HHHHcCCCCccCCCCCCccccCchHHHHHHHHhhhhCCCCE
Confidence 0000011 1246799999999999999 99999999876543322111 12245677776655678753
No 5
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.93 E-value=5e-27 Score=226.96 Aligned_cols=200 Identities=21% Similarity=0.200 Sum_probs=144.5
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC------CChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG------YRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~------~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
++++|+|++|||+||+++|++|+++ |++|.++|++++..+ .+.++.+.++++|+.+|||++++++++.
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~------G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~ 81 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ------GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKE 81 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT------TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHH
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc------CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHH
Confidence 4679999999999999999999986 899999999998753 1356788999999999999999999866
Q ss_pred cC-C----CHHHHHHHhCCCCCchhHHHH-HHHHHHHHHHHCCCCEEEcCCChhHHH-HHHHHHHHccCccccccccccc
Q 041164 134 YG-W----TMDEIVKVIGLKNNCTFCGVF-RRQALDRGASLLKVDKIATGHNADDIA-ETVLLNILRGDIARLSRCTLIT 206 (357)
Q Consensus 134 ~~-~----~i~~~~~~~~~~~~c~~c~~~-r~~~l~~~A~~~g~~~I~tGh~~dD~a-et~l~~l~rG~~~~l~~~~~~~ 206 (357)
|. . .++++. ....++||..|+.. |+..|.++|+++|+++|+|||+++|.+ ++.++++++|.+..-....-+.
T Consensus 82 ~~~~v~~~~l~~y~-~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~ 160 (376)
T 2hma_A 82 YWDRVFEYFLAEYR-AGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLS 160 (376)
T ss_dssp HHHHTHHHHHHHHH-TTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGT
T ss_pred HHHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhccccccccchhcc
Confidence 52 1 122222 23468999999765 689999999999999999999999976 5544555565432100000000
Q ss_pred cCCC-CCccccccCCcCCHHHHHHHHHHHcCCcccccC----CCCCChhhHHHHHHHHHHHHHhCChhH
Q 041164 207 TGED-GPIPRCKPFKYTYEKEIMFTYAYFKRLDYFSTE----CIYSPNAYRGFAREFIKDLERLRPRAI 270 (357)
Q Consensus 207 ~~~~-~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~~~----~~~~~~~~r~~ir~~l~~Le~~~p~~~ 270 (357)
.... ....+++||.+++|+||+. ||+.+|+|+...+ +++.. +..+++||..+....|+.+
T Consensus 161 ~l~~~~l~~~i~PL~~~~K~eVr~-~A~~~gl~~~~k~~s~~~cf~~---~~~~~~fL~~~~~~~pG~~ 225 (376)
T 2hma_A 161 QLSQEQLQKTMFPLGHLEKPEVRR-LAEEAGLSTAKKKDSTGICFIG---EKNFKNFLSNYLPAQPGRM 225 (376)
T ss_dssp TCCHHHHTTEECTTTTCCHHHHHH-HHHHTTCTTTTCCCCCSCTTTT---TSCHHHHHHTTSCCCCEEE
T ss_pred CCChhhcCcEEecCcCCCHHHHHH-HHHHcCCCcccCCCCCCccccC---chhHHHHHHHHhhcCCCCE
Confidence 0000 1246799999999999999 9999999986643 12321 1224566665555567743
No 6
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=4.5e-26 Score=202.58 Aligned_cols=171 Identities=19% Similarity=0.198 Sum_probs=130.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc-CCCHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDE 140 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~-~~~i~~ 140 (357)
++|+|++|||+||+++|+++.+. |+++.++|+|+|++. +.+.++++|+.+|+|+++++++..+ +..++.
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~------g~~v~~~~v~~~~~~----~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~ 76 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL------GYNPHLITINFGVIP----SYKLAEETAKILGFKHKVITLDRKIVEKAADM 76 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT------TEEEEEEEEECSSSC----TTHHHHHHHHHHTCEEEEEECCTHHHHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHc------CCCeEEEEEeCCCch----HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 58999999999999999999875 899999999999864 5688999999999999999987643 222333
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCC
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFK 220 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~ 220 (357)
+.. ...+|..|...++.++.++|+ |+++|+||||+||+++|+++.-+++ +.. .. ++.++|||+
T Consensus 77 ~~~---~~~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~dD~~et~~~~gl~~-------~~~----~~-~~~iirPLl 139 (203)
T 3k32_A 77 IIE---HKYPGPAIQYVHKTVLEILAD--EYSILADGTRRDDRVPKLSYSEIQS-------LEM----RK-NIQYITPLM 139 (203)
T ss_dssp HHH---HSSSHHHHHHHHHHHHHHHTT--TCSEEECCCCTTCCSSCCCHHHHHH-------HHH----HH-TCEEECGGG
T ss_pred HHh---cCCCccHHHHHHHHHHHHHhc--CCCEEEECCCcccchhhcchhhccC-------ccc----cc-CCeEEeccC
Confidence 332 234677888888888888887 9999999999999998764421111 111 01 366899999
Q ss_pred cCCHHHHHHHHHHHcCCcccccCCCCCC-hhhHHHHHHHHHH
Q 041164 221 YTYEKEIMFTYAYFKRLDYFSTECIYSP-NAYRGFAREFIKD 261 (357)
Q Consensus 221 ~~~k~EI~~~ya~~~~i~~~~~~~~~~~-~~~r~~ir~~l~~ 261 (357)
.++|+||+. |++.+ ++|..++++... ..++..+|++|..
T Consensus 140 ~~~k~eI~~-~a~~~-l~~~~~~sn~~~~~dy~~~~r~~l~~ 179 (203)
T 3k32_A 140 GFGYKTLRH-LASEF-FILEEIKSGTKLSSDYEAEIRHILKE 179 (203)
T ss_dssp GCCHHHHHH-HHHHH-EEEEEECC------CTHHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHh-CCcccCCCCCCCCCcHHHHHHHHHhh
Confidence 999999999 99999 999999988643 3455777766654
No 7
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.92 E-value=1.4e-24 Score=204.64 Aligned_cols=203 Identities=18% Similarity=0.176 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHH-
Q 041164 38 ECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKR- 116 (357)
Q Consensus 38 ~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~- 116 (357)
+||++...+.+++.+. +++|+|++|||+||+++|+++++. .|+++.++|+|+|+.. ..+.+.+.+
T Consensus 4 ~~~~~~~~~~ir~~v~-------~~kvlvalSGGvDSsvla~ll~~~-----~g~~v~av~vd~g~~~--~~e~~~~~~~ 69 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG-------DSKAIIALSGGVDSSTAAVLAHKA-----IGDRLHAVFVNTGFLR--KGEPEFVVKT 69 (308)
T ss_dssp HHHHHHHHHHHHHHHT-------TSCEEEECCSSHHHHHHHHHHHHH-----HGGGEEEEEEECSCCC--TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-------CCCEEEEEeChHHHHHHHHHHHHh-----hCCCEEEEEEcCCCCC--hHHHHHHHHH
Confidence 5777777777776663 478999999999999999999986 2789999999999843 345666777
Q ss_pred HHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCC---chhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHc
Q 041164 117 NEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNN---CTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILR 193 (357)
Q Consensus 117 ~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~---c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~r 193 (357)
+++.+|++++++++++.|. +. ..+..+| |.+|+..++..+.++|+++|+++|++|||+||++++..
T Consensus 70 ~a~~lgi~~~vv~~~~~f~---~~---l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~----- 138 (308)
T 2dpl_A 70 FRDEFGMNLHYVDAQDRFF---SA---LKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQG----- 138 (308)
T ss_dssp HTTTTCCEEEEEECHHHHH---HH---TTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC------------
T ss_pred HHHHcCCcEEEEECCHHHH---Hh---hhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccchhhcc-----
Confidence 5578999999999865321 00 0111223 56788889999999999999999999999999999732
Q ss_pred cCccccccccccc-cCCCCCccccccCCcCCHHHHHHHHHHHcCCccc---ccCCCCCCh--------------hhHHHH
Q 041164 194 GDIARLSRCTLIT-TGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYF---STECIYSPN--------------AYRGFA 255 (357)
Q Consensus 194 G~~~~l~~~~~~~-~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~---~~~~~~~~~--------------~~r~~i 255 (357)
.+..+.++. -.....+.++|||++++|+||+. |++.+|+|+. ..+||...- .+|...
T Consensus 139 ----~iks~~~~~~l~~~~~~~virPL~~l~K~EI~~-~a~~~glp~~i~~~~P~~~~~La~R~~g~~t~~~l~~~r~~~ 213 (308)
T 2dpl_A 139 ----KIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVRE-LAKFLGLPEKIYNRMPFPGPGLAVRVIGEVTPEKIRIVREAN 213 (308)
T ss_dssp ------------------CCCEEECTTTTCCHHHHHH-HHHHTTCCHHHHTCCCCCTTGGGGGBSSSCCHHHHHHHHHHH
T ss_pred ----chhhhhccccCCccCCCeEEEEcccCCHHHHHH-HHHHhCCCceeeecCCCCcccccccccCcccHHHHHHHHHHH
Confidence 111111110 01122367899999999999999 9999999973 223332111 122223
Q ss_pred HHHHHHHHHhCChhH
Q 041164 256 REFIKDLERLRPRAI 270 (357)
Q Consensus 256 r~~l~~Le~~~p~~~ 270 (357)
+.++.+|++.+|++.
T Consensus 214 ~~l~~~~~~~~~~~~ 228 (308)
T 2dpl_A 214 AIVEEEVERAGLRPW 228 (308)
T ss_dssp HHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhhccc
Confidence 346667777777763
No 8
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.91 E-value=3.7e-24 Score=191.78 Aligned_cols=172 Identities=14% Similarity=0.034 Sum_probs=119.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCC---
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWT--- 137 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~--- 137 (357)
+++|+|++|||+||+++++++.+. ++++.++|+|+|++. .++.+.++++|+.+|+++++++++......
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~------~~~v~~~~~~~~~~~--~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~ 74 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE------FEEVETVTFHYNQRH--SQEVEVAKSIAEKLGVKNHLLDMSLLNQLAPNA 74 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH------CSEEEEEEEESSCTT--CHHHHHHHHHHHTTCCCEEEEECGGGGGGSTGG
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc------CCceEEEEEeCCCCC--HHHHHHHHHHHHHhCCCeEEEeChHHhhhcccc
Confidence 468999999999999999999987 689999999999864 356889999999999999999987532110
Q ss_pred H--HHHHH---HhCCCCCchhHHHHHH-HHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcc-ccccccccccCCC
Q 041164 138 M--DEIVK---VIGLKNNCTFCGVFRR-QALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIA-RLSRCTLITTGED 210 (357)
Q Consensus 138 i--~~~~~---~~~~~~~c~~c~~~r~-~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~-~l~~~~~~~~~~~ 210 (357)
+ +.+.. ....+++|..|+.+++ .++.++|++.|+++|++||++||+++.- ..++.+. .+..+.... .+
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~---~~~~~~~~~l~~~~~~~--~~ 149 (219)
T 3bl5_A 75 LTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYP---DCRDEFVKSCNVTVNLA--ME 149 (219)
T ss_dssp GC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCG---GGSHHHHHHHHHHHHHH--HT
T ss_pred cccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCCC---CCCHHHHHHHHHHHHhc--cC
Confidence 0 11111 1245789999999999 7889999999999999999999986520 0011000 011111110 01
Q ss_pred CCccccccCCcCCHHHHHHHHHHHcCCc---ccccCCCC
Q 041164 211 GPIPRCKPFKYTYEKEIMFTYAYFKRLD---YFSTECIY 246 (357)
Q Consensus 211 ~~i~~irPL~~~~k~EI~~~ya~~~~i~---~~~~~~~~ 246 (357)
..+.++|||++++|+||+. |++.+|+| +..+++++
T Consensus 150 ~~~~ii~PL~~~~K~ei~~-~a~~~glp~~~~~~t~sc~ 187 (219)
T 3bl5_A 150 KPFVIHTPLMWLNKAETWK-LADELGALDFVKNNTLTCY 187 (219)
T ss_dssp SCCEEECTTTTCCHHHHHH-HHHHTTCHHHHHHHCCCST
T ss_pred CCeEEEeccccCCHHHHHH-HHHHcCCCccchhheeecc
Confidence 2367899999999999999 99999994 23445555
No 9
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.90 E-value=2e-23 Score=210.25 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=121.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHH-HHHHHhCCCeEEEeeccccCCCHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVK-RNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~-~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
+++|+||+|||+||+++|+++++. .|.++.++|+|+|+. +..+.+.+. .+|+.+|++++++++++.|...+
T Consensus 230 ~~kvlvalSGGvDSsvla~ll~~~-----~G~~v~av~vd~g~~--~~~e~~~~~~~~a~~lgi~~~vv~~~~~~~~~l- 301 (527)
T 3tqi_A 230 KEQVIVGLSGGVDSAVTATLVHKA-----IGDQLVCVLVDTGLL--RLNEVDEVLNVFQKHLGAKVICVDAKDRFMKAL- 301 (527)
T ss_dssp TSCEEEECTTTHHHHHHHHHHHHH-----HGGGEEEEEECCSCS--CTTHHHHHHHHHTTSSCCEEEEECCHHHHHSSS-
T ss_pred CCeEEEEEecCcCHHHHHHHHHHH-----hCCeEEEEEeccCCC--ChhHHHHHHHHHHHHcCCcEEEEeChHHHHHhh-
Confidence 478999999999999999999986 378999999999986 333445554 59999999999999876541110
Q ss_pred HHHHHhCCCC---CchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc-cccccccccCCCCCccc
Q 041164 140 EIVKVIGLKN---NCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR-LSRCTLITTGEDGPIPR 215 (357)
Q Consensus 140 ~~~~~~~~~~---~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~-l~~~~~~~~~~~~~i~~ 215 (357)
.+..+ .|.+|+..++..+.++|++.|+++|++|||+||++|+.+++.-++...+ ...+.++. . ...+.+
T Consensus 302 -----~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~-~-~~~~~i 374 (527)
T 3tqi_A 302 -----KGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLP-L-NMELKL 374 (527)
T ss_dssp -----SSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHHCC----------------------------CE
T ss_pred -----cCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccccccccCCChhheeeeecccccCc-c-cccCcc
Confidence 01111 3567888899999999999999999999999999999987731111100 11111111 1 113568
Q ss_pred cccCCcCCHHHHHHHHHHHcCCcc---cccCCCCCC
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLDY---FSTECIYSP 248 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~~---~~~~~~~~~ 248 (357)
+|||++++|+||+. |++.+|+|+ +..+||+..
T Consensus 375 irPL~~l~K~EIr~-~a~~lGlp~~~v~~~P~p~~~ 409 (527)
T 3tqi_A 375 IEPLRELFKDEVRK-LGLELGLPADLIYRHPFPGPG 409 (527)
T ss_dssp ECTTTTCCHHHHHH-HHHHHTCCHHHHTCCCCCTTG
T ss_pred ccchhcCCHHHHHH-HHHHcCCChhhhccCCCCCCC
Confidence 99999999999999 999999998 667776643
No 10
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.89 E-value=1.5e-23 Score=187.88 Aligned_cols=164 Identities=12% Similarity=0.131 Sum_probs=124.3
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
...++.++.++ +++|+||+|||+||++||+++.++ +.++.++|+|+|.. .+++.++++++|+.+|++
T Consensus 33 ~~~l~~~~~~~-----~~~v~Va~SGGkDS~vLL~ll~~~------~~~v~~v~vd~g~~--~~e~~~~v~~~~~~~gi~ 99 (215)
T 1sur_A 33 EGRVAWALDNL-----PGEYVLSSSFGIQAAVSLHLVNQI------RPDIPVILTDTGYL--FPETYRFIDELTDKLKLN 99 (215)
T ss_dssp HHHHHHHHHHC-----CSEEEEECCCCTTHHHHHHHHHHH------STTCEEEEEECSCB--CHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHc-----CCCEEEEecCCHHHHHHHHHHHHh------CCCCeEEEeeCCCC--CHHHHHHHHHHHHHhCCc
Confidence 44666667665 579999999999999999999998 56889999999985 477789999999999999
Q ss_pred eEEEeeccccCCCHHHHHHHhCC------CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc
Q 041164 125 LKIVSYKDLYGWTMDEIVKVIGL------KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR 198 (357)
Q Consensus 125 ~~iv~~~~~~~~~i~~~~~~~~~------~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~ 198 (357)
+++++.+.. .+......+. ...+..|..++...+.+++++.|+++|++||++||...+. .
T Consensus 100 ~~v~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r~----------~ 165 (215)
T 1sur_A 100 LKVYRATES----AAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRA----------N 165 (215)
T ss_dssp EEEEECSSC----HHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTTT----------T
T ss_pred EEEEeCCCC----HHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhhc----------C
Confidence 999986532 2222221120 0124567778888999999999999999999999843211 1
Q ss_pred cccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 199 LSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 199 l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
+. .+ ... ++..++|||++|+++||+. |++.+|||+..
T Consensus 166 ~~---~~-~~~-~~~~~i~PLl~~t~~dI~~-y~~~~~lp~~~ 202 (215)
T 1sur_A 166 LP---VL-AIQ-RGVFKVLPIIDWDNRTIYQ-YLQKHGLKYHP 202 (215)
T ss_dssp CC---SE-EEE-TTEEEECTTTTCCHHHHHH-HHHHHTCCCCG
T ss_pred CC---cc-ccC-CCEEEEechHhCCHHHHHH-HHHHhCCCCCh
Confidence 11 11 111 2356799999999999999 99999999854
No 11
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.89 E-value=4.9e-23 Score=201.59 Aligned_cols=153 Identities=19% Similarity=0.153 Sum_probs=123.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh-----CCCeEEEeeccccC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY-----GLPLKIVSYKDLYG 135 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l-----gi~~~iv~~~~~~~ 135 (357)
+++++|++|||+||+++++++.+. |+++.++|+|++-- .++.+.+.++++|+.+ |++++++++++.+
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~------G~~v~av~v~~~~~-~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~~- 258 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKR------GVSVEAVHFHSPPF-TSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQ- 258 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHB------TEEEEEEEEECTTT-SCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHH-
T ss_pred CCeEEEEeCCCChHHHHHHHHHHc------CCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHHH-
Confidence 578999999999999999999985 89999999998521 1356678899999999 9999999987543
Q ss_pred CCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccc
Q 041164 136 WTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPR 215 (357)
Q Consensus 136 ~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ 215 (357)
..+........+|..|+..++..+.++|++.|+++|++|||+||+++++++++..... . ..+.+
T Consensus 259 ---~~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~~l~~~~~------------~-~~~~v 322 (413)
T 2c5s_A 259 ---KTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINE------------V-TNYPV 322 (413)
T ss_dssp ---HHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHHHHGG------------G-CCSCE
T ss_pred ---HHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHhcccc------------c-CCCEE
Confidence 1222222222467888888889999999999999999999999999988888763210 0 12568
Q ss_pred cccCCcCCHHHHHHHHHHHcCCc
Q 041164 216 CKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 216 irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
+|||+.++|+||+. |++..|++
T Consensus 323 irPL~~l~K~eI~~-~a~~~Gl~ 344 (413)
T 2c5s_A 323 IRPLITMDKLEIIK-IAEEIGTY 344 (413)
T ss_dssp ECTTTTCCHHHHHH-HHHHTTCH
T ss_pred EeccCCCCHHHHHH-HHHHcCCC
Confidence 99999999999999 99999974
No 12
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.89 E-value=2.5e-23 Score=188.50 Aligned_cols=173 Identities=15% Similarity=0.091 Sum_probs=121.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC-eEEEeec--cccCC-C
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP-LKIVSYK--DLYGW-T 137 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~-~~iv~~~--~~~~~-~ 137 (357)
++++|++|||+||+++|+++.+. ++++.++|+|+|++. ..+.+.++++|+.+|++ +++++++ ..++. .
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~------~~~v~av~~~~g~~~--~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~~ 74 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD------YDDVHCITFDYGQRH--RAEIEVAQELSQKLGAAAHKVLDVGLLNELATSS 74 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH------CSEEEEEEEESSSSC--HHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHHH
T ss_pred CCEEEEecCcHHHHHHHHHHHHc------CCCEEEEEEECCCCC--HHHHHHHHHHHHHhCCCceEEEeChhHHHHhhhh
Confidence 58999999999999999999987 679999999999864 46688999999999999 9999987 32321 0
Q ss_pred HHH--------HHHHhCCCCCchhHHHHHHHHH-HHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccC
Q 041164 138 MDE--------IVKVIGLKNNCTFCGVFRRQAL-DRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTG 208 (357)
Q Consensus 138 i~~--------~~~~~~~~~~c~~c~~~r~~~l-~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~ 208 (357)
+.. .....+.+++|..|+..++..+ ..+|++.|+++|++|||+||+++.- .++...+..+......
T Consensus 75 l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~~-----~~r~~~~~~~~~~~~~ 149 (232)
T 2pg3_A 75 LTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYP-----DCRDEFVKALNQAIVL 149 (232)
T ss_dssp HHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCG-----GGSHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCCC-----CCCHHHHHHHHHHHHH
Confidence 000 0111245788999999997665 8999999999999999999976310 0010001111110000
Q ss_pred -CCCCccccccCCcCCHHHHHHHHHHHcCC-cc--cccCCCCCC
Q 041164 209 -EDGPIPRCKPFKYTYEKEIMFTYAYFKRL-DY--FSTECIYSP 248 (357)
Q Consensus 209 -~~~~i~~irPL~~~~k~EI~~~ya~~~~i-~~--~~~~~~~~~ 248 (357)
....+.+++||++++|.||+. |+..+|+ |+ ..++++|..
T Consensus 150 ~~~~~~~i~~PL~~~~K~ei~~-~a~~~gl~~~~~~~t~sC~~~ 192 (232)
T 2pg3_A 150 GIARDIRFETPLMWLNKAETWA-LADYYQQLDTVRYHTLTCYNG 192 (232)
T ss_dssp HHTSCCEEECTTTTCCHHHHHH-HHHHTTCHHHHHHHCCCCTTS
T ss_pred hCCCCeEEEEecCCCCHHHHHH-HHHHcCCCcccccccCCCcCC
Confidence 012367899999999999999 9999999 63 445555543
No 13
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.89 E-value=2.7e-22 Score=201.13 Aligned_cols=160 Identities=21% Similarity=0.268 Sum_probs=119.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
+++|+||+|||+||+++|+++++. |+++.++|+|+|+. ++.+.+.++++|+++|+++++++.++.|. +.
T Consensus 209 ~~kvvvalSGGvDSsvla~ll~~~------g~~v~av~vd~g~~--~~~e~~~v~~~~~~lgi~~~vv~~~~~f~---~~ 277 (503)
T 2ywb_A 209 KDRVLLAVSGGVDSSTLALLLAKA------GVDHLAVFVDHGLL--RLGEREEVEGALRALGVNLLVVDAKERFL---KA 277 (503)
T ss_dssp TSEEEEEECSSHHHHHHHHHHHHH------TCEEEEEEEECSCS--CTTHHHHHHHHHHHTTCCEEEEECHHHHH---HH
T ss_pred CccEEEEecCCcchHHHHHHHHHc------CCeEEEEEEeCCCC--ChHHHHHHHHHHHHhCCCEEEEECcHHHH---Hh
Confidence 479999999999999999999997 78999999999984 35668899999999999999999875431 11
Q ss_pred HHHHhCCCC---CchhHHHHHHHHHHHHHHHC-CCCEEEcCCChhHHHHHHHHHHHccCcccccccccc--ccCCCCCcc
Q 041164 141 IVKVIGLKN---NCTFCGVFRRQALDRGASLL-KVDKIATGHNADDIAETVLLNILRGDIARLSRCTLI--TTGEDGPIP 214 (357)
Q Consensus 141 ~~~~~~~~~---~c~~c~~~r~~~l~~~A~~~-g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~--~~~~~~~i~ 214 (357)
+ .+..+ .|..|+..+++.+.++|+++ |+++|++|||++|++|+.++ |....+....++ .+. ...+.
T Consensus 278 l---~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~----g~~~~iks~~~l~~l~~-~~~~~ 349 (503)
T 2ywb_A 278 L---KGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGG----HGAAKIKSHHNVGGLPE-DLEFE 349 (503)
T ss_dssp H---TTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC---------------------CCCS-SCCCE
T ss_pred h---cCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccC----Ccccccccccccccccc-cccCc
Confidence 1 11122 35678888999999999999 99999999999999998543 211111111111 111 12367
Q ss_pred ccccCCcCCHHHHHHHHHHHcCCccc
Q 041164 215 RCKPFKYTYEKEIMFTYAYFKRLDYF 240 (357)
Q Consensus 215 ~irPL~~~~k~EI~~~ya~~~~i~~~ 240 (357)
+++||++++|+||+. |++.+|+|+.
T Consensus 350 ii~PL~~l~K~EVr~-~a~~~glp~~ 374 (503)
T 2ywb_A 350 LLEPFRLLFKDEVRE-LALLLGLPDT 374 (503)
T ss_dssp EECTTTTCCHHHHHH-HHHHTTCCHH
T ss_pred eEehhhcCCHHHHHH-HHHHcCCChh
Confidence 899999999999999 9999999974
No 14
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.86 E-value=2.6e-21 Score=189.25 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=127.1
Q ss_pred CCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccC
Q 041164 57 LFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYG 135 (357)
Q Consensus 57 l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~ 135 (357)
.+.+++||+||+|||+||+++|++|++. |++|+++|+|+|+. .+++.+.++++|+++|+ +++++++++.|.
T Consensus 6 ~l~~~~KVvVA~SGGlDSSvll~~L~e~------G~eViavtvd~Gq~--~~~ele~a~~~A~~lGi~~~~vvD~~eef~ 77 (455)
T 1k92_A 6 HLPVGQRIGIAFSGGLDTSAALLWMRQK------GAVPYAYTANLGQP--DEEDYDAIPRRAMEYGAENARLIDCRKQLV 77 (455)
T ss_dssp SCCTTSEEEEECCSSHHHHHHHHHHHHT------TCEEEEEEEECCCT--TCSCTTHHHHHHHHHTCSEEEEEECHHHHH
T ss_pred hhcCCCeEEEEEcChHHHHHHHHHHHHc------CCEEEEEEEEcCCC--CHHHHHHHHHHHHHhCCCeEEEEeChHHHH
Confidence 4677899999999999999999999885 89999999999984 23567899999999999 899999986663
Q ss_pred CCHHHHHHHh------C---CCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCC--hhHHHHHHHHHHHccCccccccccc
Q 041164 136 WTMDEIVKVI------G---LKNNCTFCGVFRRQALDRGASLLKVDKIATGHN--ADDIAETVLLNILRGDIARLSRCTL 204 (357)
Q Consensus 136 ~~i~~~~~~~------~---~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~--~dD~aet~l~~l~rG~~~~l~~~~~ 204 (357)
..+-...... + .+.....+|.+++..+.++|++.|+++|++||| .+|++..-+. +.. +
T Consensus 78 ~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq~rf~~~--~~a----l----- 146 (455)
T 1k92_A 78 AEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRY--GLL----T----- 146 (455)
T ss_dssp HHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHHHHH--HHH----H-----
T ss_pred HHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHH--HHh----c-----
Confidence 1111222211 1 122234567788999999999999999999997 4787642111 110 0
Q ss_pred cccCCCCCccccccCCc-------CCHHHHHHHHHHHcCCccccc-CCCCCCh
Q 041164 205 ITTGEDGPIPRCKPFKY-------TYEKEIMFTYAYFKRLDYFST-ECIYSPN 249 (357)
Q Consensus 205 ~~~~~~~~i~~irPL~~-------~~k~EI~~~ya~~~~i~~~~~-~~~~~~~ 249 (357)
...+.++.|+++ ++|+||+. |++.+|||+... .+||+.+
T Consensus 147 -----~p~l~viaPlr~~~ll~~~lsK~EI~~-yA~~~GIp~~~t~~~pyS~d 193 (455)
T 1k92_A 147 -----NAELQIYKPWLDTDFIDELGGRHEMSE-FMIACGFDYKMSVEKAYSTD 193 (455)
T ss_dssp -----CTTCEEECGGGCHHHHHHSSSHHHHHH-HHHHTTCCCCCCCCCSSEEE
T ss_pred -----CCCCEEECeeccccccccCCCHHHHHH-HHHHcCCCcccCCCCCCccC
Confidence 012667899987 79999999 999999999764 5888764
No 15
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.86 E-value=2.4e-21 Score=188.15 Aligned_cols=183 Identities=17% Similarity=0.216 Sum_probs=130.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccC--CCH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYG--WTM 138 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~--~~i 138 (357)
++|+|++|||+||+++|++|++. +|++++++|+|+|+ .++.+.++++|+++|+ +++++++++.|. ...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~-----~g~~V~av~vd~g~----~~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~ 71 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET-----YRAEVIAFTADIGQ----GEEVEEAREKALRTGASKAIALDLKEEFVRDFVF 71 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH-----HTCEEEEEEEESSC----SSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHh-----hCCcEEEEEEeCCC----HHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHhhH
Confidence 48999999999999999999875 37899999999997 3458899999999999 799999875541 111
Q ss_pred HHHHHHhCCCCC-----chhHHHHHHHHHHHHHHHCCCCEEEcCCChh--HHHHHHHHHHHccCccccccccccccCCCC
Q 041164 139 DEIVKVIGLKNN-----CTFCGVFRRQALDRGASLLKVDKIATGHNAD--DIAETVLLNILRGDIARLSRCTLITTGEDG 211 (357)
Q Consensus 139 ~~~~~~~~~~~~-----c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d--D~aet~l~~l~rG~~~~l~~~~~~~~~~~~ 211 (357)
+.+. ....... ...|+..++..|.++|++.|+++|++|||+| |+++..+ | +..+. .
T Consensus 72 ~~i~-~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~-----g----~~~l~-------p 134 (400)
T 1kor_A 72 PMMR-AGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFEL-----T----AYALK-------P 134 (400)
T ss_dssp HHHH-TTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHH-----H----HHHHC-------T
T ss_pred HHHH-cCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHHH-----H----HHhcC-------C
Confidence 2222 1111122 2348888899999999999999999999997 9887421 1 11111 1
Q ss_pred CccccccCCcC---CHHHHHHHHHHHcCCcccc-cCCCCCChhh---HHHHHHHHHHHHHhCChhHH
Q 041164 212 PIPRCKPFKYT---YEKEIMFTYAYFKRLDYFS-TECIYSPNAY---RGFAREFIKDLERLRPRAIL 271 (357)
Q Consensus 212 ~i~~irPL~~~---~k~EI~~~ya~~~~i~~~~-~~~~~~~~~~---r~~ir~~l~~Le~~~p~~~~ 271 (357)
.+.+++||+++ +|+||+. |++.+|||+.. ..|||+.+.- +..-..+|.+++...|....
T Consensus 135 ~l~ii~PL~~~~~~tK~eI~~-ya~~~gip~~~~~~~pys~d~nllg~s~e~~~Led~~~~~p~~~~ 200 (400)
T 1kor_A 135 DIKVIAPWREWSFQGRKEMIA-YAEAHGIPVPVTQEKPYSMDANLLHISYEGGVLEDPWAEPPKGMF 200 (400)
T ss_dssp TCEEECGGGTCCCCSHHHHHH-HHHHTTCCCC-----CCEEEECSSCEEEESGGGGCTTSCCCTTCC
T ss_pred CCEEEEeecccccCCHHHHHH-HHHHcCCCcccCCCCCCcCcchhcccchhhhHHHhHHhcCCcccc
Confidence 25679999999 9999999 99999999985 4588865421 11112355555555565433
No 16
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.85 E-value=3.7e-21 Score=182.29 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=124.5
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
...++.++.++ ++++|++|||+||+|||+++.++... .++++.++|+|+|+. .+++.++++++|+++|++
T Consensus 36 ~~ilr~~~~~~------~~ivVa~SGGkDS~vLL~Ll~~~~~~--~~~~i~vv~vDtg~~--~~et~~~v~~~~~~~gi~ 105 (325)
T 1zun_A 36 IHIIREVAAEF------DNPVMLYSIGKDSAVMLHLARKAFFP--GKLPFPVMHVDTRWK--FQEMYRFRDQMVEEMGLD 105 (325)
T ss_dssp HHHHHHHHHHC------SSEEEECCSSHHHHHHHHHHHHHHTT--SCCSSCEEEECCSCC--CHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhC------CCEEEEEcChHHHHHHHHHHHHhccc--cCCCEEEEEEECCCC--CHHHHHHHHHHHHHcCCC
Confidence 33444445443 58999999999999999999987532 256788999999985 478899999999999999
Q ss_pred eEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHc--cCcccccc-
Q 041164 125 LKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILR--GDIARLSR- 201 (357)
Q Consensus 125 ~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~r--G~~~~l~~- 201 (357)
++++..+.....++.. ...+++..|..++...|.++++++|++++++||++||......++++. |.......
T Consensus 106 l~v~~~~~~~~~G~~~-----~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~Ra~~~~~~~r~~~~~~d~~ 180 (325)
T 1zun_A 106 LITHINPDGVAQGINP-----FTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPK 180 (325)
T ss_dssp EEEECC-------------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEEECTTCCBCGG
T ss_pred EEEEeCchHHhcCCCc-----cccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhhhhcccceeccccccccCcc
Confidence 9999865432111111 122456778888889999999999999999999999876443333332 21100000
Q ss_pred -ccc----cc--cCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 202 -CTL----IT--TGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 202 -~~~----~~--~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
..+ .. ....+...+++||.+|++.||+. |++.+||||..
T Consensus 181 ~~rp~l~~~~n~~~~~g~~~~i~PLl~wt~~dIw~-Yi~~~~lp~~~ 226 (325)
T 1zun_A 181 NQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQ-YIYLEGIPIVP 226 (325)
T ss_dssp GCCCCCSSCCCCCCCTTCEEEECTTTTCCHHHHHH-HHHHHTCCCCS
T ss_pred ccCcchhhhccccccCCCeEEEEchhhCCHHHHHH-HHHHhCCCcch
Confidence 000 00 00122355699999999999999 99999999844
No 17
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.85 E-value=2.2e-21 Score=177.91 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=123.7
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
...++.+++.+ +++|+|++|||+||++||+++.++ +.++.++|+|+|.. .+++.++++++|+.+|++
T Consensus 34 ~~~l~~a~~~~-----~~~v~va~SGG~DS~vLL~ll~~~------~~~v~vv~idtg~~--~~et~~~~~~~~~~~gi~ 100 (252)
T 2o8v_A 34 EGRVAWALDNL-----PGEYVLSSSFGIQAAVSLHLVNQI------RPDIPVILTDTGYL--FPETYRFIDELTDKLKLN 100 (252)
T ss_dssp HHHHHHHHTTS-----CSCEEEECCCSTTHHHHHHHHHHH------STTCEEEECCCSCB--CHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHc-----CCCEEEEeCCCHHHHHHHHHHHHh------CCCCeEEEecCCCC--CHHHHHHHHHHHHHhCCc
Confidence 34555566554 468999999999999999999998 46789999999985 478899999999999999
Q ss_pred eEEEeeccccCCCHHHHHHHhCC------CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccc
Q 041164 125 LKIVSYKDLYGWTMDEIVKVIGL------KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIAR 198 (357)
Q Consensus 125 ~~iv~~~~~~~~~i~~~~~~~~~------~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~ 198 (357)
++++..+. +.+......+. ..++..|...+...|.+++++.|+++++|||++||...+ . .
T Consensus 101 ~~v~~~~~----~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~R-------~---~ 166 (252)
T 2o8v_A 101 LKVYRATE----SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSR-------A---N 166 (252)
T ss_dssp EEECCCSS----CHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTCC-------T---T
T ss_pred eEEEcCCC----CHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccccccc-------c---c
Confidence 99987642 22222222110 123567788888899999999999999999999985321 1 1
Q ss_pred cccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 199 LSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 199 l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
+.. + ... .++.+++||++|+++||+. |++.+||||..
T Consensus 167 l~~---~-~~~-~~~~~i~PL~~wt~~dV~~-y~~~~~lp~~~ 203 (252)
T 2o8v_A 167 LPV---L-AIQ-RGVFKVLPIIDWDNRTIYQ-YLQKHGLKYHP 203 (252)
T ss_dssp SCS---E-EES-SSSEEECGGGSCCHHHHHH-HHHHTTCCCCT
T ss_pred Cce---e-ecC-CCeEEEechhhCCHHHHHH-HHHHcCCCCCh
Confidence 111 1 111 2366799999999999999 99999999854
No 18
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.85 E-value=2.4e-21 Score=178.15 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecCCCCCCChhhHHHHHHHHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDEGISGYRDDSLQTVKRNEIQ 120 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~g~~~~~~~~~~~v~~~~~~ 120 (357)
+.+.+++...|+++ +.++|+|++|||+||+++++++.+.. | .++.++|+++|. + .+.+.++++|+.
T Consensus 7 ~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~~~~~-----g~~~v~av~~~~~~---~-~~~~~a~~~a~~ 73 (257)
T 2e18_A 7 DKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLATKAL-----GKEKVLGLIMPYFE---N-KDVEDAKLVAEK 73 (257)
T ss_dssp HHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHHHHHH-----CGGGEEEEECCSSC---S-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHHHHhc-----CCCcEEEEEeCCCC---c-hHHHHHHHHHHH
Confidence 45667788888887 56789999999999999999999862 3 789999999995 3 668899999999
Q ss_pred hCCCeEEEeeccccCCCHHHHHHHhCC-CCCc---hhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCc
Q 041164 121 YGLPLKIVSYKDLYGWTMDEIVKVIGL-KNNC---TFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDI 196 (357)
Q Consensus 121 lgi~~~iv~~~~~~~~~i~~~~~~~~~-~~~c---~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~ 196 (357)
+|+++++++++..+ +.+...... ..++ ..|..+|+.++..+|.+.|+.+|+|||+.+|. .|-+
T Consensus 74 lgi~~~~i~i~~~~----~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~---------~Gy~ 140 (257)
T 2e18_A 74 LGIGYKVINIKPIV----DSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFL---------TGYF 140 (257)
T ss_dssp HTCEEEECCCHHHH----HHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHH---------HTCS
T ss_pred hCCCEEEEEChHHH----HHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHh---------cCCe
Confidence 99999999887543 222222111 2333 44556889999999999999999999987764 2321
Q ss_pred cccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 197 ARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 197 ~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
. ...+....++||.+++|.||+. |++.+|+|+
T Consensus 141 t----------~~g~~~~~i~Pl~~l~K~ev~~-la~~~gip~ 172 (257)
T 2e18_A 141 T----------KWGDGASDYAPIINLYKTEVWE-IAKRIGVPE 172 (257)
T ss_dssp C----------TTSTTCSSBCTTTTSCHHHHHH-HHHHHTCCH
T ss_pred e----------ccCCCccCEeecCCCcHHHHHH-HHHHcCCCH
Confidence 1 1112356799999999999999 999999995
No 19
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.84 E-value=2.1e-20 Score=189.13 Aligned_cols=187 Identities=16% Similarity=0.162 Sum_probs=129.7
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh-C
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY-G 122 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l-g 122 (357)
+.+++.+.|+++ .++++|+||+|||+||+++++++++. +|.++.++|+|+|+.. ..+..+.++.+|+.+ |
T Consensus 241 ~~~~~i~~ir~~---g~~~~vvvalSGGvDSsv~a~ll~~~-----~G~~v~~v~vd~g~~~-~~e~~~~~~~~~~~l~g 311 (556)
T 3uow_A 241 YHELELKNIEKY---KHDHYVIAAMSGGIDSTVAAAYTHKI-----FKERFFGIFIDNGLLR-KNEAENVYTFLKSTFPD 311 (556)
T ss_dssp HHHHHHHHHGGG---TTTCEEEEECCSSHHHHHHHHHHHHH-----HGGGEEEEEEECSCSC-TTHHHHHHHHHHHHCTT
T ss_pred ccccceeeeeec---CCCceEEEEcccCCCHHHHHHHHHHH-----hCCeEEEEEEecCCCC-hHHHHHHHHHHHHhcCC
Confidence 344445556665 44789999999999999999999875 3789999999999863 233334446799999 9
Q ss_pred CCeEEEeecccc-----CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCC----CEEEcCCChhHHHHHHHHHHHc
Q 041164 123 LPLKIVSYKDLY-----GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKV----DKIATGHNADDIAETVLLNILR 193 (357)
Q Consensus 123 i~~~iv~~~~~~-----~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~----~~I~tGh~~dD~aet~l~~l~r 193 (357)
++++++++++.| +.+.++.. +..|+..+++.+.++|++.|+ ++|++||+.+|++++...+
T Consensus 312 i~~~~vd~~~~f~~~l~g~~~pe~k--------r~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ies~~~~--- 380 (556)
T 3uow_A 312 MNITKIDASENFLSNLQGVTDPEQK--------RKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSK--- 380 (556)
T ss_dssp SEEEEEECHHHHHHHTTTCCCHHHH--------HHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHHHHHSCC----
T ss_pred CCeEEeccHHHHHHhhcCCCChHHH--------HHHHHHHHHHHHHHHHHHcCCcccccccccCccChHHHhhcccc---
Confidence 999999997654 22222221 235666788999999999996 8999999999999886432
Q ss_pred cCcccccccccccc-CCCCCccccccCCcCCHHHHHHHHHHHcCCc---ccccCCCCCChhh
Q 041164 194 GDIARLSRCTLITT-GEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD---YFSTECIYSPNAY 251 (357)
Q Consensus 194 G~~~~l~~~~~~~~-~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~---~~~~~~~~~~~~~ 251 (357)
|....+.....+.. .....+.+++||++++|+||+. |++.+||| ++..+||+..-++
T Consensus 381 g~~~~iks~~n~~gl~~~~~~~li~PL~~l~K~EVr~-la~~lGlp~~~~~r~P~p~p~la~ 441 (556)
T 3uow_A 381 NLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDDVKT-LSRELNLPEEITNRHPFPGPGLAI 441 (556)
T ss_dssp ------------------CCCEEECTTTTCCHHHHHH-HHHTTTCCHHHHHCCCCCTTTTTT
T ss_pred cccceecccccccccccccccceEeecccCcHHHHHH-HHHHcCCCHHHhCCCCCCCCCccc
Confidence 11111111111100 0111366899999999999999 99999999 4556677654433
No 20
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=183.98 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=152.5
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC-eEEEeeccccCC-C
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP-LKIVSYKDLYGW-T 137 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~-~~iv~~~~~~~~-~ 137 (357)
.+++|+||+|||+||++++++|.+. |++|+++|+|+|+. ++.+.++++|+++|++ ++++++.+.|.. .
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~------G~eV~av~vd~g~~----~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~ 73 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ------GYDVIAYLANIGQK----EDFEEARKKALKLGAKKVFIEDVSREFVEEF 73 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT------TEEEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECHHHHHHHT
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc------CCEEEEEEEECCcH----HHHHHHHHHHHHhCCCEEEEEeChHHHHHHH
Confidence 3578999999999999999999885 89999999999984 4578999999999998 899998765531 1
Q ss_pred HHHHHHHhCCCCCchhH-----HHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCC
Q 041164 138 MDEIVKVIGLKNNCTFC-----GVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGED 210 (357)
Q Consensus 138 i~~~~~~~~~~~~c~~c-----~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~ 210 (357)
+............|..| +.+++..+.++|++.|+++|++|||+ +|+++..+. ..+ + .
T Consensus 74 ~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~lg--~~~----l----------~ 137 (413)
T 2nz2_A 74 IWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELS--CYS----L----------A 137 (413)
T ss_dssp HHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHH--HHH----H----------C
T ss_pred HHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHHHH--HHh----c----------C
Confidence 22222221121234444 55678999999999999999999999 788763221 000 0 0
Q ss_pred CCccccccCC------cC-CHHHHHHHHHHHcCCccccc-CCCCCChh--h-HHHHHHHHHHHHHhCChhHHHHHHhhhh
Q 041164 211 GPIPRCKPFK------YT-YEKEIMFTYAYFKRLDYFST-ECIYSPNA--Y-RGFAREFIKDLERLRPRAILDIIKSGEN 279 (357)
Q Consensus 211 ~~i~~irPL~------~~-~k~EI~~~ya~~~~i~~~~~-~~~~~~~~--~-r~~ir~~l~~Le~~~p~~~~~i~~t~~~ 279 (357)
..+.+++||+ ++ +|+||+. |++.+|||+..+ .+|++.+. . +..-..+|.+++...|..+..+...-++
T Consensus 138 p~l~ii~Pl~d~~~ll~~~sK~EI~~-yA~~~Gip~~~~~~~~~S~d~n~~g~s~e~~~Led~~~~~p~~~~~~~~~~~~ 216 (413)
T 2nz2_A 138 PQIKVIAPWRMPEFYNRFKGRNDLME-YAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKTQDPAK 216 (413)
T ss_dssp TTCEEECGGGCHHHHTTCC-CHHHHH-HHHHTTCCCCSSCCCSSCEEECSSCEEECSGGGGSTTSCCCGGGCCSSCCTTT
T ss_pred CCCceeccccchhhhccCCCHHHHHH-HHHHcCCCeecCCCCCCCCChhhhhcchhhhhhhchhhcCchhhhhccCChhH
Confidence 1267899999 88 9999999 999999999864 46665431 1 1112246777766667544332222211
Q ss_pred ccc-ccc--ccCcccccccccccccccccchhhHHHHHhh
Q 041164 280 FRI-STS--TKMPEQGTCERCGYISSQKWCKACVLLEGLN 316 (357)
Q Consensus 280 l~~-~~~--~~~~~~~~C~~Cg~p~~~~~c~~c~~~~~~~ 316 (357)
... ++. .......--.++|..++...+..+.+++.|+
T Consensus 217 ~p~~~~~~~i~f~~G~pv~~~g~~~~~~~~~~~~~~~~ln 256 (413)
T 2nz2_A 217 APNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLN 256 (413)
T ss_dssp SCSSCEEEEEEEETTEEEEEEETTTCCEECSHHHHHHHHH
T ss_pred CCCCCeEEEEEEecCceEEEecccCccccCCHHHHHHHHH
Confidence 110 000 0000111234467666666888999988875
No 21
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.84 E-value=1.8e-20 Score=171.22 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL 123 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi 123 (357)
+...++..+++. ..++|+|++|||+||+++++++.+. .|.++.++|++++.. ++.+.+.++++|+.+|+
T Consensus 13 l~~~l~d~v~~~----g~~~vvv~lSGGiDSsv~a~l~~~~-----~g~~v~av~~~~~~~--~~~~~~~a~~~a~~lgi 81 (249)
T 3p52_A 13 MCDFIQEKVKNS----QSQGVVLGLSGGIDSALVATLCKRA-----LKENVFALLMPTQIS--NKANLEDALRLCADLNL 81 (249)
T ss_dssp HHHHHHHHHHTS----SCSEEEEECCSSHHHHHHHHHHHHH-----HTTSEEEEECCSCCS--SCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh----CCCCEEEEcCCCHHHHHHHHHHHHH-----cCCcEEEEEecCCCC--CHHHHHHHHHHHHHhCC
Confidence 344444445443 3578999999999999999999985 278999999999874 45668899999999999
Q ss_pred CeEEEeeccccCCCHHHHHHHhC---CCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccc
Q 041164 124 PLKIVSYKDLYGWTMDEIVKVIG---LKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLS 200 (357)
Q Consensus 124 ~~~iv~~~~~~~~~i~~~~~~~~---~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~ 200 (357)
+++++++++.+ +.+..... ....|.+|+.+|+.++..+|.+.|+.+|.|||. +|.+ .|-.
T Consensus 82 ~~~~v~i~~~~----~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~-se~~--------~g~~---- 144 (249)
T 3p52_A 82 EYKIIEIQSIL----DAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNK-SELL--------LGYG---- 144 (249)
T ss_dssp EEEECCCHHHH----HHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHH--------HTCS----
T ss_pred CEEEEECcHHH----HHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCH-HHHH--------ccch----
Confidence 99999887543 22222111 123588889999999999999999998888875 3321 1211
Q ss_pred cccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 201 RCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 201 ~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
....+....++||.+++|.||+. +++..|+|
T Consensus 145 ------t~~gd~~~~i~PL~~l~K~eV~~-la~~~gip 175 (249)
T 3p52_A 145 ------TIYGDLACAFNPIGSLYKSEIYA-LAKYLNLH 175 (249)
T ss_dssp ------CTTTTTCCSEETTTTSCHHHHHH-HHHHTTCC
T ss_pred ------hhhccccCccccccCCcHHHHHH-HHHHcCCc
Confidence 11122245699999999999999 99999999
No 22
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.83 E-value=2.7e-20 Score=170.09 Aligned_cols=169 Identities=15% Similarity=0.068 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQ 120 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~ 120 (357)
++.+...++..+++ ...++|+|++|||+||+++++++.+. +.+++++|++++. .++.+.+.++++|+.
T Consensus 13 ~~~l~~~l~~~v~~----~~~~~vvv~lSGGiDSsv~a~l~~~~------~~~~~av~~~~~~--~~~~~~~~a~~~a~~ 80 (249)
T 3fiu_A 13 SQKLVNWLSDSCMN----YPAEGFVIGLSGGIDSAVAASLAVKT------GLPTTALILPSDN--NQHQDMQDALELIEM 80 (249)
T ss_dssp HHHHHHHHHHHHHT----TTCSEEEEECCSSHHHHHHHHHHHHT------TSCEEEEECCCTT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hCCCCEEEEecCcHHHHHHHHHHHHh------CCCCEEEEecCCC--CCHHHHHHHHHHHHH
Confidence 33444444444444 34578999999999999999999986 3455599999875 356778999999999
Q ss_pred hCCCeEEEeeccccCCCHHHHHHH-hCCCCCchhH-----HHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHcc
Q 041164 121 YGLPLKIVSYKDLYGWTMDEIVKV-IGLKNNCTFC-----GVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRG 194 (357)
Q Consensus 121 lgi~~~iv~~~~~~~~~i~~~~~~-~~~~~~c~~c-----~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG 194 (357)
+|++++++++++.+....+.+... .....+|..| ..+|+.++..+|.+.|+.+|+|||. ++. . .|
T Consensus 81 lgi~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn~-sE~---~-----~G 151 (249)
T 3fiu_A 81 LNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNA-CEW---Y-----MG 151 (249)
T ss_dssp HTCEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCH-HHH---H-----HT
T ss_pred hCCCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCCH-HHH---h-----cC
Confidence 999999999876552111111000 0124678888 7889999999999999999999964 432 1 22
Q ss_pred CccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc--ccc
Q 041164 195 DIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD--YFS 241 (357)
Q Consensus 195 ~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~--~~~ 241 (357)
-. ....+....++||.+++|.||+. +|+..|+| +++
T Consensus 152 ~~----------t~~gd~~~~i~PL~~l~K~eVr~-lA~~lglp~~i~~ 189 (249)
T 3fiu_A 152 YF----------TKFGDGAADILPLVNLKKSQVFE-LGKYLDVPKNILD 189 (249)
T ss_dssp CS----------CTTTTTCCSBCTTTTCCHHHHHH-HHHHTTCCHHHHH
T ss_pred ch----------hccCCCCcceeecccCcHHHHHH-HHHHcCCcHHHcc
Confidence 10 11112345799999999999999 99999999 544
No 23
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9e-20 Score=167.96 Aligned_cols=170 Identities=17% Similarity=0.118 Sum_probs=125.8
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL- 123 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi- 123 (357)
...++.++..+ ++++|++|||+||++||+++.++... +.++.++|+|+|.. .+++.++++++++.+|+
T Consensus 31 ~~~l~~a~~~~------~~v~va~SGGkDS~vLL~ll~~~~~~---~~~i~vv~iDtg~~--~~et~~~v~~~~~~~gl~ 99 (261)
T 2oq2_A 31 QEIIAWSIVTF------PHLFQTTAFGLTGLVTIDMLSKLSEK---YYMPELLFIDTLHH--FPQTLTLKNEIEKKYYQP 99 (261)
T ss_dssp HHHHHHHHHHC------SSEEEECCCCHHHHHHHHHHHHHTTT---SCCCEEEEECCSCB--CHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHHhCcc---CCCeeEEEecCCCC--CHHHHHHHHHHHHHhCCC
Confidence 34556666664 37999999999999999999998321 35789999999985 47889999999999999
Q ss_pred ---CeEEEeeccccCCCHHHHHHHhCC----CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCc
Q 041164 124 ---PLKIVSYKDLYGWTMDEIVKVIGL----KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDI 196 (357)
Q Consensus 124 ---~~~iv~~~~~~~~~i~~~~~~~~~----~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~ 196 (357)
+++++..+. ..+.+++....+. .+++..|...+...|.++++++|++++++||++||... |...
T Consensus 100 ~~~~l~v~~~~~--~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~~-------R~~~ 170 (261)
T 2oq2_A 100 KNQTIHVYKPDG--CESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSA-------RSQL 170 (261)
T ss_dssp GTCCCEEECSTT--CSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCGG-------GGGC
T ss_pred CCCCeEEEecCC--ccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchHH-------HccC
Confidence 999887542 1223343332221 24567778888899999999999999999999999531 2211
Q ss_pred cccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 197 ARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 197 ~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
..+. . + ..+++.+++||.+|+++||+. |++.+|||+..
T Consensus 171 ~~~~----~-~-~~~~~~ki~PL~~wt~~dV~~-Yi~~~~lp~~p 208 (261)
T 2oq2_A 171 SIIE----I-D-ELNGILKINPLINWTFEQVKQ-YIDANNVPYNE 208 (261)
T ss_dssp CSEE----E-E-TTTTEEEECTTTTCCHHHHHH-HHHHHTCCCCG
T ss_pred Ccee----e-c-CCCCeEEEechHhCCHHHHHH-HHHHcCCCCCc
Confidence 1111 0 1 112366799999999999999 99999999854
No 24
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.83 E-value=2.7e-20 Score=187.47 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=116.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHH-HHHHhCCCeEEEeeccccCCCHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKR-NEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~-~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
+++|+|++|||+||+++++++++. .|.++.++|+|+|+.. ..+.+.+.+ +|+.+|++++++++++.|. +
T Consensus 227 ~~~vvvalSGGvDSsv~a~ll~~a-----~G~~v~av~v~~g~~~--~~e~~~~~~~la~~lgi~~~~v~~~~~f~---~ 296 (525)
T 1gpm_A 227 DDKVILGLSGGVDSSVTAMLLHRA-----IGKNLTCVFVDNGLLR--LNEAEQVLDMFGDHFGLNIVHVPAEDRFL---S 296 (525)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH-----HGGGEEEEEEECSCSC--TTHHHHHHHHHTTTTCCCEEEEECHHHHH---H
T ss_pred ccceEEEecCCCCHHHHHHHHHHH-----hCCCEEEEEEeCCCCC--chHHHHHHHHHHHHhCCcEEEEeccHHHH---H
Confidence 369999999999999999999985 2779999999999853 344566655 8999999999999875431 1
Q ss_pred HHHHHhCCCCC---chhHHHHHHHHHHHHHHHC-CCCEEEcCCChhHHHHHHHHHHHccCccccc---cccccccCCCCC
Q 041164 140 EIVKVIGLKNN---CTFCGVFRRQALDRGASLL-KVDKIATGHNADDIAETVLLNILRGDIARLS---RCTLITTGEDGP 212 (357)
Q Consensus 140 ~~~~~~~~~~~---c~~c~~~r~~~l~~~A~~~-g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~---~~~~~~~~~~~~ 212 (357)
.+ .+..+| |..|+..+++.+.++|+++ |+++|++|||.+|++|++ ....+|... +. .+..+ +. ...
T Consensus 297 ~l---~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~-~~~~~~s~~-iks~~~l~gl-~~-~~~ 369 (525)
T 1gpm_A 297 AL---AGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESA-ASATGKAHV-IKSHHNVGGL-PK-EMK 369 (525)
T ss_dssp HH---TTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTT-C-------------------------C
T ss_pred hh---cCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhc-Ccccccccc-cccccccccc-cc-ccC
Confidence 11 122233 5678888999999999999 999999999999999974 101233221 10 11111 11 123
Q ss_pred ccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 213 IPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 213 i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
..+++||++++|+||+. |++.+|+|+
T Consensus 370 ~~~i~PL~~l~K~EVr~-la~~lglp~ 395 (525)
T 1gpm_A 370 MGLVEPLKELFKDEVRK-IGLELGLPY 395 (525)
T ss_dssp CEEECTTTTCCHHHHHH-HHHHTTCCH
T ss_pred CcEEehhhcCCHHHHHH-HHHHcCCCH
Confidence 56899999999999999 999999996
No 25
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.82 E-value=9.7e-20 Score=168.41 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=119.6
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCe
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPL 125 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~ 125 (357)
+++...|+++-.....++|+|++|||+||+++++++.+.. +.++.++|+++|.. ++++.+.++++|+.+|+++
T Consensus 10 ~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~-----~~~v~av~~~~~~~--~~~e~~~a~~~a~~lgi~~ 82 (268)
T 1xng_A 10 VYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVF-----KENAHALLMPSSVS--MPENKTDALNLCEKFSIPY 82 (268)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHH-----GGGEEEEECCCSSS--CHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhC-----CCCEEEEEeCCCCC--CHHHHHHHHHHHHHcCCCE
Confidence 3444444444222345789999999999999999999872 36899999999863 5777899999999999999
Q ss_pred EEEeeccccCCCHHHHHHHhCCCCC---chhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccc
Q 041164 126 KIVSYKDLYGWTMDEIVKVIGLKNN---CTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRC 202 (357)
Q Consensus 126 ~iv~~~~~~~~~i~~~~~~~~~~~~---c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~ 202 (357)
++++++..+ +.+........+ |..|+.+|+.++..+|.+.|+.+|+|||.. + ++ .|-.
T Consensus 83 ~~i~i~~~~----~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~~-E---~~-----~Gy~------ 143 (268)
T 1xng_A 83 TEYSIAPYD----AIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKS-E---RM-----LGYG------ 143 (268)
T ss_dssp EECCCHHHH----HHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHH-H---HH-----HTCS------
T ss_pred EEEeChHHH----HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcHH-H---Hh-----cCcc------
Confidence 999887543 223222111133 455567899999999999999999999842 2 21 2321
Q ss_pred cccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcc
Q 041164 203 TLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDY 239 (357)
Q Consensus 203 ~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~ 239 (357)
+...+....++||.+++|.||+. |++.+|+|.
T Consensus 144 ----t~~gd~~~~i~PL~~l~K~ev~~-la~~~gip~ 175 (268)
T 1xng_A 144 ----TLFGDLACAINPIGELFKTEVYE-LARRLNIPK 175 (268)
T ss_dssp ----CTTTTTCCSEETTTTSCHHHHHH-HHHHTTCCH
T ss_pred ----cccCCCCeeEEecCCCCHHHHHH-HHHHcCCcH
Confidence 11112356799999999999999 999999994
No 26
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.81 E-value=2.2e-19 Score=173.79 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=121.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCC-CeEEEeeccccCCC-H
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL-PLKIVSYKDLYGWT-M 138 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi-~~~iv~~~~~~~~~-i 138 (357)
.+||+||+|||+||++++++|++. |++|+++++|.|+. ++++.++++|+.+|+ +++++++.+.|... +
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke~------G~eViavt~d~Gq~----~Ele~A~~vA~~lGi~~~~VvDl~eef~~~v~ 83 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCEK------GFDVIAYVANVGQK----DDFVAIKEKALKTGASKVYVEDLRREFVTDYI 83 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT------TCEEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTH
T ss_pred cCCEEEEeCCcHHHHHHHHHHHHC------CCeEEEEEEEcCCH----HHHHHHHHHHHHcCCceEEEEecHHHHHHhhh
Confidence 468999999999999999999986 89999999999973 458899999999999 99999998766311 1
Q ss_pred HHHHHHh-----CCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh--hHHHHHHHHHHHccCccccccccccccCCCC
Q 041164 139 DEIVKVI-----GLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA--DDIAETVLLNILRGDIARLSRCTLITTGEDG 211 (357)
Q Consensus 139 ~~~~~~~-----~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~--dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~ 211 (357)
....+.. ..+...+.|+......+.++|++.|+++|++||++ +|+...-+. ++. + ..
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~--~~a----l----------~p 147 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELT--YAA----L----------NP 147 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHH--HHH----H----------CT
T ss_pred hHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHHHHH--HHh----c----------CC
Confidence 1222211 13344555888888999999999999999999997 465421110 111 0 01
Q ss_pred CccccccCCc-------CCHHHHHHHHHHHcCCccccc-CCCCCCh
Q 041164 212 PIPRCKPFKY-------TYEKEIMFTYAYFKRLDYFST-ECIYSPN 249 (357)
Q Consensus 212 ~i~~irPL~~-------~~k~EI~~~ya~~~~i~~~~~-~~~~~~~ 249 (357)
.+.++.||++ ++|+||+. ||+.+|||+... .+|||.+
T Consensus 148 ~~~IiaPl~d~~~l~~~lsK~Eir~-~A~e~Glp~~~t~~kp~S~d 192 (421)
T 1vl2_A 148 NLKVISPWKDPEFLAKFKGRTDLIN-YAMEKGIPIKVSKKRPYSED 192 (421)
T ss_dssp TSEEECGGGCHHHHHHTC--CHHHH-HHHHHTCCCCSSCCCSSEEE
T ss_pred CCeEEcccCchhhccccCCHHHHHH-HHHHcCCCcccCCCCCCcCC
Confidence 2567889999 79999999 999999998754 4777654
No 27
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.79 E-value=6.4e-20 Score=189.29 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=133.2
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecCCCCCCChhhHHHHHHHHHHhCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDEGISGYRDDSLQTVKRNEIQYGL 123 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi 123 (357)
.+++.+.|+++ + .+++|+|++|||+||+++++++++. .| .++.++|+|+|+.. ..+.+.++++|+++|+
T Consensus 227 ~~~~i~~Ir~~--v-~~~~vvv~lSGGvDSsVla~Ll~~a-----lG~~~V~aV~vd~g~~~--~~e~e~a~~~a~~lGI 296 (697)
T 2vxo_A 227 ELECIREIKER--V-GTSKVLVLLSGGVDSTVCTALLNRA-----LNQEQVIAVHIDNGFMR--KRESQSVEEALKKLGI 296 (697)
T ss_dssp HHHHHHHHHHH--H-TTCEEEEECCSSHHHHHHHHHHHHH-----SCGGGEEEEEEECSCCC--SSTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH--h-cccceEEEccCchHHHHHHHHHHHh-----cCCceEEEEEeccccCC--cchHHHHHHHHHHhCC
Confidence 34445555554 2 3479999999999999999999986 36 89999999999863 3457889999999999
Q ss_pred CeEEEeeccccCCCHHHHH--------HHhCCCCCchhHHH---------HHHHHHHHHHHHCCCC----EEEcCCChhH
Q 041164 124 PLKIVSYKDLYGWTMDEIV--------KVIGLKNNCTFCGV---------FRRQALDRGASLLKVD----KIATGHNADD 182 (357)
Q Consensus 124 ~~~iv~~~~~~~~~i~~~~--------~~~~~~~~c~~c~~---------~r~~~l~~~A~~~g~~----~I~tGh~~dD 182 (357)
+++++++++.|......+. .....+++|..|.. .+++++..+|++.|++ +|++||+.+|
T Consensus 297 ~~~vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~~~~D 376 (697)
T 2vxo_A 297 QVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPD 376 (697)
T ss_dssp CEEEEECHHHHHTCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCC
T ss_pred cEEEecchHHHHhhhhhhcccccccchhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEeccChh
Confidence 9999999765421100000 00012345666522 3445667888999998 9999999999
Q ss_pred HHHHHHHHHHccCccccccc---cccccCCCCCccccccCCcCCHHHHHHHHHHHcCCccc-ccCCCCC
Q 041164 183 IAETVLLNILRGDIARLSRC---TLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYF-STECIYS 247 (357)
Q Consensus 183 ~aet~l~~l~rG~~~~l~~~---~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~-~~~~~~~ 247 (357)
++|+++..+.+|.+. +... .++.........+++||++++|+||+. |++.+|+|+. ...||+.
T Consensus 377 ~iEs~~~~l~~g~~~-iks~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~-la~~lGlP~~i~~r~Ps~ 443 (697)
T 2vxo_A 377 LIESASLVASGKAEL-IKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRI-LGRELGLPEELVSRHPFP 443 (697)
T ss_dssp SBCCHHHHHHSCCCG-GGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHH-HHHHTTCCHHHHTCCCCC
T ss_pred hhhhhhhhhhcCccc-cccccccchhhHHhccCCEEEEecccCCHHHHHH-HHHHcCCCcceeeCCCCC
Confidence 999988777776432 1100 111000011245799999999999999 9999999984 3445554
No 28
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.6e-19 Score=167.40 Aligned_cols=184 Identities=16% Similarity=0.095 Sum_probs=126.3
Q ss_pred cccccCCCceeeccCCCccchHHHHHHHHHHHHHHHHh-----hcCCCCC-CCEEEEEecCChhHHHHHHHHHHHhhhC-
Q 041164 16 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIV-----GNQLFKA-GERIAIGASGGKDSTVLAFVLSELNRRH- 88 (357)
Q Consensus 16 C~~C~~~~a~~~~~~~~~~lC~~cf~~~~~~kv~~~i~-----k~~l~~~-~~kvlVa~SGG~DS~~LL~ll~~~~~~~- 88 (357)
|.+|+...+.+..+.++..+ ...+++++..+++ -...+.+ +++|+|++|||+||+||||++.+.....
T Consensus 7 c~~c~~~~~~~~~~~~~~~l-----~~~~~e~i~~~~~~il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~ 81 (306)
T 2wsi_A 7 AEMCYEITNSYLHIDQKSQI-----IASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYF 81 (306)
T ss_dssp HHHHHHHHHHHHTCCCSCHH-----HHHHHHHHHHHHHHHHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHH-----HHHHHHHHHHHHHHHHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhc
Confidence 99998557888877777566 4455565554443 1222322 4789999999999999999998752110
Q ss_pred ---------------CCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchh
Q 041164 89 ---------------NYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTF 153 (357)
Q Consensus 89 ---------------~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~ 153 (357)
..+.++.++|+|+|. ..++..++++++++++|++++++..+..++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~--~fpet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~------------- 146 (306)
T 2wsi_A 82 FIKAQNSQFDFEFQSFPMQRLPTVFIDQEE--TFPTLENFVLETSERYCLSLYESQRQSGASVNMAD------------- 146 (306)
T ss_dssp HHHHHHC--------CCCCCEEEEECCCTT--CCHHHHHHHHHHHHHTTEEEEECCC-----CCHHH-------------
T ss_pred ccccccccccccccccCCCCeeEEEEeCCC--CCHHHHHHHHHHHHHcCCCEEEEeCCccccccHHH-------------
Confidence 014678999999997 37889999999999999999888765332222222
Q ss_pred HHHHHHHHHHHHHHH-CCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCC--CccccccCCcCCHHHHHHH
Q 041164 154 CGVFRRQALDRGASL-LKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDG--PIPRCKPFKYTYEKEIMFT 230 (357)
Q Consensus 154 c~~~r~~~l~~~A~~-~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~--~i~~irPL~~~~k~EI~~~ 230 (357)
.+.++++. -+..+|++|++.||.. ++ .+. ++.....+ .+.+++||.+|++.||+.
T Consensus 147 -------~~~~~~k~~p~~~aii~G~Rrdds~---------~r--~l~---~~~~~d~~~p~~~ri~PL~dWt~~DVw~- 204 (306)
T 2wsi_A 147 -------AFRDFIKIYPETEAIVIGIRHTDPF---------GE--ALK---PIQRTDSNWPDFMRLQPLLHWDLTNIWS- 204 (306)
T ss_dssp -------HHHHHHHHCTTCCEEECCCCCCSSS---------CC--CCC---SEEECCTTSCSCEEECTTTTCCHHHHHH-
T ss_pred -------HHHHHHhhCCCCcEEEEEEeccccc---------cc--ccC---ceeccCCCCCCcEEEeChHHCCHHHHHH-
Confidence 22334444 4788999999999943 11 111 11111111 356799999999999999
Q ss_pred HHHHcCCcccc
Q 041164 231 YAYFKRLDYFS 241 (357)
Q Consensus 231 ya~~~~i~~~~ 241 (357)
|+..++|||..
T Consensus 205 Yi~~~~lpy~p 215 (306)
T 2wsi_A 205 FLLYSNEPICG 215 (306)
T ss_dssp HHHHHCCCBCH
T ss_pred HHHHcCCCCCh
Confidence 99999999843
No 29
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.76 E-value=8.5e-18 Score=155.90 Aligned_cols=170 Identities=22% Similarity=0.345 Sum_probs=119.7
Q ss_pred HHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 45 ~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
...++.++..+ +++|+|++| |+||++||+++.++ +.++.++|+|+|.. .+++.++++++++.+|++
T Consensus 43 ~~~l~~a~~~~-----g~~i~Va~S-GkDS~vLL~Ll~~~------~~~i~vv~iDtg~~--~~et~~~v~~~~~~~gi~ 108 (275)
T 2goy_A 43 QDILKAAFEHF-----GDELWISFS-GAEDVVLVDMAWKL------NRNVKVFSLDTGRL--HPETYRFIDQVREHYGIA 108 (275)
T ss_dssp HHHHHHHHHHH-----STTEEEECC-SSTTHHHHHHHHHH------CTTCCEEEECCSCC--CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHc-----CCCEEEEee-cHHHHHHHHHHHHh------CCCceEEEEeCCCC--CHHHHHHHHHHHHHHCCe
Confidence 44566666654 478999999 99999999999997 56788999999984 578899999999999999
Q ss_pred eEEEeeccccCCCHHHHHHHhCC-----CCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccc
Q 041164 125 LKIVSYKDLYGWTMDEIVKVIGL-----KNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARL 199 (357)
Q Consensus 125 ~~iv~~~~~~~~~i~~~~~~~~~-----~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l 199 (357)
++++..+.. ++++.....+. .+++..|+..+...+.++.. +.+.+++||+.||... .|.....+
T Consensus 109 l~v~~~~~~---~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~--~~~~~itG~r~dds~~------~R~~~~~~ 177 (275)
T 2goy_A 109 IDVLSPDPR---LLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPG------TRSQVAVL 177 (275)
T ss_dssp CEEECCCHH---HHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHH--TCSEEECCCCGGGTTS------CSCCCCSE
T ss_pred EEEEeCCcc---CHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHH--hcCchhcCchhhhhhh------hhhhCccc
Confidence 998865421 12233222222 14566777777888888776 4579999999999520 01111111
Q ss_pred ccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 200 SRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 200 ~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
........ ...++.+++||++|+++||+. |++.+||||..
T Consensus 178 ~~d~~~~~-~~~g~~~i~PL~~wt~~dV~~-Yi~~~~lp~~~ 217 (275)
T 2goy_A 178 EIDGAFST-PEKPLYKFNPLSSMTSEEVWG-YIRMLELPYNS 217 (275)
T ss_dssp EECTTTCC-SSSCCEEECTTTTCCHHHHHH-HHHHTTCCCCG
T ss_pred cccccccc-CCCCeEEEechHhCCHHHHHH-HHHHhCCCCCh
Confidence 10000000 022366899999999999999 99999999743
No 30
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.66 E-value=9.2e-16 Score=141.97 Aligned_cols=174 Identities=13% Similarity=-0.009 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhC-----CCCeeEEEEEecCCCCCCChhhHH
Q 041164 38 ECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRH-----NYGLDLFLLSIDEGISGYRDDSLQ 112 (357)
Q Consensus 38 ~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~-----~~g~~v~av~id~g~~~~~~~~~~ 112 (357)
+-++..+...++..+++.+ ...+|+|++|||+||+++++++++..... ..+++++++++++|. ..+.+
T Consensus 20 ~~~i~~~~~~L~~~l~~~g---~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~----~~~~~ 92 (275)
T 1wxi_A 20 EEEIRRSVDFLKSYLQTYP---FIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGV----QADEQ 92 (275)
T ss_dssp HHHHHHHHHHHHHHHHHST---TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSS----CTTHH
T ss_pred HHHHHHHHHHHHHHHHHcC---CCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCC----ccCHH
Confidence 3445555566666666642 13589999999999999999998763210 014689999999774 23578
Q ss_pred HHHHHHHHhCC-CeEEEeeccccCCCHHHHHHHhCCCCCchhHH---HHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHH
Q 041164 113 TVKRNEIQYGL-PLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCG---VFRRQALDRGASLLKVDKIATGHNADDIAETVL 188 (357)
Q Consensus 113 ~v~~~~~~lgi-~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~---~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l 188 (357)
.++++|+.+|+ +++++++.+.+....+.+......+++|..|+ .+|..++..+|.+.|+.+|.|||..++
T Consensus 93 dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTgn~~E~------ 166 (275)
T 1wxi_A 93 DCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHAAEA------ 166 (275)
T ss_dssp HHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHH------
T ss_pred HHHHHHHHcCCCeEEEEecHHHHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECccHHHH------
Confidence 89999999999 99999987654322233322122345666675 467788889999999999999886553
Q ss_pred HHHHccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 189 LNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 189 ~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
..|- .+...+....+.||.+++|.||+. +++..|+|
T Consensus 167 ---~~Gy----------~t~~gd~~~~~~PL~~l~K~eVr~-la~~lglp 202 (275)
T 1wxi_A 167 ---ITGF----------FTKYGDGGTDINPLYRLNKRQGKQ-LLAALACP 202 (275)
T ss_dssp ---TTTC----------SCTTTTTCCSBCTTTTCCHHHHHH-HHHHTTCC
T ss_pred ---ccCc----------ccccCCCccceeeccCCCHHHHHH-HHHHhCCc
Confidence 1221 111222345699999999999999 99999998
No 31
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.65 E-value=1.4e-15 Score=140.55 Aligned_cols=171 Identities=12% Similarity=-0.038 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCC-C--eeEEEEEecCCCCCCChhhHHHHHH
Q 041164 40 FYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNY-G--LDLFLLSIDEGISGYRDDSLQTVKR 116 (357)
Q Consensus 40 f~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~-g--~~v~av~id~g~~~~~~~~~~~v~~ 116 (357)
++..+...++..+++.. ..+|+|++|||+||+++++++++.....+. + ++++++++++|. ..+.+.+++
T Consensus 21 ~i~~~~~~L~d~v~~~g----~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~----~~d~~~A~~ 92 (271)
T 1kqp_A 21 EIEDRVNFLKQYVKKTG----AKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGT----QQDEDDAQL 92 (271)
T ss_dssp HHHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSS----CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC----CCCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCC----CCCHHHHHH
Confidence 34445555666665542 358999999999999999999876321100 1 689999998764 234788999
Q ss_pred HHHHhCC-CeEEEeeccccCCCHHHHHHH-hCCCCCchhHH---HHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHH
Q 041164 117 NEIQYGL-PLKIVSYKDLYGWTMDEIVKV-IGLKNNCTFCG---VFRRQALDRGASLLKVDKIATGHNADDIAETVLLNI 191 (357)
Q Consensus 117 ~~~~lgi-~~~iv~~~~~~~~~i~~~~~~-~~~~~~c~~c~---~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l 191 (357)
+|+.+|+ +++++++.+.+....+.+... .....++..|+ .+|..++..+|.+.|+.++.|||..++
T Consensus 93 va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl~tgn~~E~--------- 163 (271)
T 1kqp_A 93 ALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEA--------- 163 (271)
T ss_dssp HHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHH---------
T ss_pred HHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCEEEECccHHHh---------
Confidence 9999999 999999876543222222221 22344566565 477888899999999988888875442
Q ss_pred HccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 192 LRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 192 ~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
..|- .+...+....+.||.+++|.||+. +++..|+|
T Consensus 164 ~~Gy----------~t~~gd~~~~~~Pl~~l~K~eVr~-la~~lglp 199 (271)
T 1kqp_A 164 VTGF----------FTKYGDGGADLLPLTGLTKRQGRT-LLKELGAP 199 (271)
T ss_dssp TTTC----------SCTTTTTCCSBCTTTTCCHHHHHH-HHHHTTCC
T ss_pred ccCC----------ccccccccccccccccCCHHHHHH-HHHHcCCC
Confidence 1221 111122345689999999999999 99999998
No 32
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.61 E-value=1e-15 Score=143.86 Aligned_cols=119 Identities=16% Similarity=0.111 Sum_probs=94.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh-------CCCeEEEe-eccc
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY-------GLPLKIVS-YKDL 133 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l-------gi~~~iv~-~~~~ 133 (357)
.+++|++|| +||++++++|.+. |+++.++|++++ +...+.++++|+.+ ++|+++++ +.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~------G~~v~~v~~~~~-----~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~ 247 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKR------GVEVIPVYIGKD-----DKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDRV 247 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHB------TCEEEEEEESCS-----SHHHHHHHHHHHHHHTTCTTSCCCCEEESSHHHH
T ss_pred CcEEEEEeC-CcHHHHHHHHHhC------CCeEEEEEEEEC-----HHHHHHHHHHHHHHhhhccCCCCcEEEeCCCHHH
Confidence 689999999 9999999999987 999999999943 34577889999998 89999997 6422
Q ss_pred cCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH-HHHHHHHHccCccccccccccccCCCCC
Q 041164 134 YGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA-ETVLLNILRGDIARLSRCTLITTGEDGP 212 (357)
Q Consensus 134 ~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a-et~l~~l~rG~~~~l~~~~~~~~~~~~~ 212 (357)
+ ++|.+.|+++|+|||+++|.+ ++..++..... ..
T Consensus 248 ~-----------------------------~~A~~~ga~~I~tG~~~~~~~~qt~~l~~~~~~---------------~~ 283 (307)
T 1vbk_A 248 L-----------------------------KLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKM---------------FP 283 (307)
T ss_dssp H-----------------------------HHHHHHTCCEEECCCCGGGCCTTCHHHHHHHHH---------------CS
T ss_pred H-----------------------------HHHHHcCCCEEEECcccchhccccHHHhhhccC---------------cC
Confidence 1 788999999999999998764 22222211110 02
Q ss_pred ccccccCCcCCHHHHHHHHHHHcCC
Q 041164 213 IPRCKPFKYTYEKEIMFTYAYFKRL 237 (357)
Q Consensus 213 i~~irPL~~~~k~EI~~~ya~~~~i 237 (357)
.+++|||..++|.||+. +|+..|+
T Consensus 284 ~~vl~PL~~~~K~eI~~-~a~~iGl 307 (307)
T 1vbk_A 284 VPVYYPLIALPEEYIKS-VKERLGL 307 (307)
T ss_dssp SCEECHHHHSCHHHHHH-HHHHHTC
T ss_pred CeEEEccCCCCHHHHHH-HHHHcCC
Confidence 55799999999999999 9998875
No 33
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.59 E-value=7.6e-15 Score=135.61 Aligned_cols=174 Identities=13% Similarity=-0.015 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhh-----CCCCeeEEEEEecCCCCCCChhhH
Q 041164 37 RECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRR-----HNYGLDLFLLSIDEGISGYRDDSL 111 (357)
Q Consensus 37 ~~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~-----~~~g~~v~av~id~g~~~~~~~~~ 111 (357)
.+-.++.+...++..+++.+ -++++|++|||+||++++.++.+.... .+.+++++++++++|. ..+.
T Consensus 20 ~~~~i~~~v~~L~d~l~~~g----~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~----~~~~ 91 (279)
T 3q4g_A 20 PQFEIERRVAFIKRKLTEAR----YKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGE----QKDE 91 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSS----CSCH
T ss_pred HHHHHHHHHHHHHHHHHHcC----CCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCC----hHHH
Confidence 34455555666666676653 358999999999999999997764221 1125789999999875 3347
Q ss_pred HHHHHHHHHhCC-CeEEEeeccccCCCHH----HHHHH-----hCCCCCchhH---HHHHHHHHHHHHHHCCCCEEEcCC
Q 041164 112 QTVKRNEIQYGL-PLKIVSYKDLYGWTMD----EIVKV-----IGLKNNCTFC---GVFRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 112 ~~v~~~~~~lgi-~~~iv~~~~~~~~~i~----~~~~~-----~~~~~~c~~c---~~~r~~~l~~~A~~~g~~~I~tGh 178 (357)
+.++++|+.+|+ +++++++++.+..... .+... ....+.+..| .++|..+|..+|.+.|+-++.|||
T Consensus 92 ~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn 171 (279)
T 3q4g_A 92 DEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDH 171 (279)
T ss_dssp HHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC
T ss_pred HHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCcc
Confidence 789999999999 8999999876532112 22211 1123444444 567889999999999987677766
Q ss_pred ChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 179 NADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 179 ~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
-.+. + .|- .+...+...-+.||.+++|.||+. +|+..|+|
T Consensus 172 ~sE~-~--------~Gy----------~TkyGD~~~di~Pl~dl~Kt~Vr~-LA~~lgiP 211 (279)
T 3q4g_A 172 SAEN-I--------TGF----------YTKFGDGACDLAPLFGLNKRQVRL-LAKTLGAP 211 (279)
T ss_dssp HHHH-H--------HTC----------SCTTTTTCCSBCTTTTCCHHHHHH-HHHHTTCC
T ss_pred HHhh-h--------ccc----------hhhcCCcccceeecCCCcHHHHHH-HHHHhCCc
Confidence 4432 1 231 111122234589999999999999 99999998
No 34
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.56 E-value=1.4e-14 Score=133.89 Aligned_cols=169 Identities=16% Similarity=0.051 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCC-CCe--eEEEEEecCCCCCCChhhHHHHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHN-YGL--DLFLLSIDEGISGYRDDSLQTVKRN 117 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~-~g~--~v~av~id~g~~~~~~~~~~~v~~~ 117 (357)
++.+...++..+++.+ -++++|++|||+||+++++++....+..+ .++ +++++++.++. ..+.+.++++
T Consensus 30 i~~~v~~L~d~l~~~g----~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~~----~~~~~dA~~~ 101 (285)
T 3dpi_A 30 AERRIGFVADYLRTAG----LRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGA----QHDEADARRA 101 (285)
T ss_dssp HHHHHHHHHHHHHHHT----CCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcC----CCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCCC----HHHHHHHHHH
Confidence 3344445555555543 36899999999999999988876422111 133 78999988764 3446778999
Q ss_pred HHHhC-CCeEEEeeccccCCCHHHHHHHhCCC------CC---chhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHH
Q 041164 118 EIQYG-LPLKIVSYKDLYGWTMDEIVKVIGLK------NN---CTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETV 187 (357)
Q Consensus 118 ~~~lg-i~~~iv~~~~~~~~~i~~~~~~~~~~------~~---c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~ 187 (357)
|+.+| ++++++++.+.+....+.+.. .+.. ++ |..+.++|..+|..+|.+.|+-+|.|||..+....
T Consensus 102 a~~lg~i~~~~i~i~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~sE~~~G-- 178 (285)
T 3dpi_A 102 LAFVRADETLTVDVKPAADAMLAALAA-GGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAESVMG-- 178 (285)
T ss_dssp HHHHCCSEEEECCCHHHHHHHHHHHHH-TTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHHHH--
T ss_pred HHHcCCCcEEEEEChHHHHHHHHHHHh-cCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHHhhhCC--
Confidence 99999 799999998765322222221 1111 22 44456788899999999999977777775543211
Q ss_pred HHHHHccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcCCc
Q 041164 188 LLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLD 238 (357)
Q Consensus 188 l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~ 238 (357)
.....|+ ....+.||.+++|.||+. +++..|+|
T Consensus 179 -y~T~~GD----------------~~~~~~Pl~~l~K~eV~~-la~~lg~p 211 (285)
T 3dpi_A 179 -FFTKFGD----------------GGADVLPLAGLTKRRVRA-LARMLGAD 211 (285)
T ss_dssp -HHHCCCC----------------CCCSBCTTTTCCHHHHHH-HHHHTTCC
T ss_pred -cccccCC----------------CceeEeeecCCcHHHHHH-HHHHcCCC
Confidence 1111221 233599999999999999 99999998
No 35
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.53 E-value=2.2e-14 Score=146.39 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecCCCCCCChhhHHHHHHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDEGISGYRDDSLQTVKRNEI 119 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~g~~~~~~~~~~~v~~~~~ 119 (357)
.+.+...+++.+++. ..++|+|++|||+||+++++++.+. +| .++.+++++.+. .++.+.+.++++|+
T Consensus 310 ~~~~~~~l~~~~~~~----g~~~vvvglSGGvDSsv~a~la~~a-----lG~~~v~~v~m~~~~--~~~~~~~~A~~la~ 378 (590)
T 3n05_A 310 YSALVVGLRAYVAKN----GFRSVLIGLSGGIDSALVAAIACDA-----LGAQNVYGVSMPSKY--SSDHSKGDAAELAR 378 (590)
T ss_dssp HHHHHHHHHHHHHTT----TCCCEEEECCSSHHHHHHHHHHHHH-----HCGGGEEEEECCCSS--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCcEEEEcCCCHHHHHHHHHHHHH-----hCcccEEEEEECCCC--CCHHHHHHHHHHHH
Confidence 344444455555443 3468999999999999999999875 25 789999999875 35778999999999
Q ss_pred HhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCcccc
Q 041164 120 QYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARL 199 (357)
Q Consensus 120 ~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l 199 (357)
.+|++++++++++.+...+..+. ............+|..++..+|.+.|+.+|.|| |.++.+ .|-.
T Consensus 379 ~lgi~~~~i~i~~~~~~~~~~l~--~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~--------~Gy~--- 444 (590)
T 3n05_A 379 RTGLNFRTVSIEPMFDAYMASLG--LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELA--------VGYS--- 444 (590)
T ss_dssp HHTCEEEECCSHHHHHHHHHHHC--CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHH--------HTCC---
T ss_pred HcCCcEEEEEChHHHHHHHHHhc--ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHh--------cCch---
Confidence 99999999998765421111110 000000112245788899999999999999999 566543 2311
Q ss_pred ccccccccCCCCCccccccCCcCCHHHHHHHHHHHcC
Q 041164 200 SRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKR 236 (357)
Q Consensus 200 ~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~ 236 (357)
+...+....+.||.+++|.||+. +++..|
T Consensus 445 -------t~~gd~~~~~~Pl~~l~K~eVr~-la~~lg 473 (590)
T 3n05_A 445 -------TLYGDSVGAYGPIKDVYKTSIFR-LAEWRN 473 (590)
T ss_dssp -------CSSCTTSCSBCTTTTSCHHHHHH-HHHHHH
T ss_pred -------hhcCCCccceeecCCCcHHHHHH-HHHHhC
Confidence 11122345689999999999999 999987
No 36
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=99.38 E-value=5.2e-12 Score=117.17 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=96.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhh--------------C--CCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRR--------------H--NYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLP 124 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~--------------~--~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~ 124 (357)
++.++|++||||||+||||++.+.... . .+...+.++|+|+|. ..++..+++.++++.||++
T Consensus 58 ~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~--~FpET~ef~d~~~~~ygL~ 135 (308)
T 3fwk_A 58 NGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDD--TFKTLENFIEETSLRYSLS 135 (308)
T ss_dssp SSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTT--CCHHHHHHHHHHHHHTTEE
T ss_pred cCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCC--CCHHHHHHHHHHHHHhCCc
Confidence 368999999999999999999875210 0 012478899999998 4689999999999999998
Q ss_pred eEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHC-CCCEEEcCCChhHHHHHHHHHHHccCcccccccc
Q 041164 125 LKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLL-KVDKIATGHNADDIAETVLLNILRGDIARLSRCT 203 (357)
Q Consensus 125 ~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~-g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~ 203 (357)
++++.-.. +..+. ..+.++-+.. +++++++|-..++-. |.....+.
T Consensus 136 L~v~~p~~--~~~~~--------------------~~cc~~~K~~P~~~AwitG~RR~e~~--------Ra~l~~~e--- 182 (308)
T 3fwk_A 136 LYESDRDK--CETMA--------------------EAFETFLQVFPETKAIVIGIRHTDPF--------GEHLKPIQ--- 182 (308)
T ss_dssp EEECCTTS--CCCHH--------------------HHHHHHHHHCTTCCEEECCCCTTSTT--------CTTCCSEE---
T ss_pred EEEeCCCC--CHHHH--------------------HHHHHHHHhCCCCCEEEEEeecCCcc--------cCCCCeee---
Confidence 87764431 11111 1122233333 689999999888511 22211111
Q ss_pred ccccCCCCCccccccCCcCCHHHHHHHHHHHcCCcccc
Q 041164 204 LITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 204 ~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
. .+...+.+.++.||.+|+..||+. |...++||+..
T Consensus 183 ~-~d~~w~~~iKVnPL~dWT~~DVW~-YI~~~~LPynp 218 (308)
T 3fwk_A 183 K-TDANWPDFYRLQPLLHWNLANIWS-FLLYSNEPICE 218 (308)
T ss_dssp E-CCTTSCSCEEECTTTTCCHHHHHH-HHHHHTCCCCG
T ss_pred c-cCCCCCCeEEEechhhCCHHHHHH-HHHHcCCCCCc
Confidence 0 011112356789999999999999 99999999854
No 37
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.20 E-value=9.7e-11 Score=120.29 Aligned_cols=167 Identities=15% Similarity=0.059 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHH----HhhhCCCCee--------------------------
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSE----LNRRHNYGLD-------------------------- 93 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~----~~~~~~~g~~-------------------------- 93 (357)
..--++..+++. ..++|+|++|||+||++++.++.. ..+. .|.+
T Consensus 290 ~~~~l~d~~~~~----g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~a--lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 363 (634)
T 3ilv_A 290 TSLGLFDYMRKS----RSKGFVLSLSGGADSSACAIMVAEMIRKGLKE--LGLTAFLQKSNMETLFDLPALQHLPFEEQA 363 (634)
T ss_dssp HHHHHHHHHHHT----TCCSEEEECCSSHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHTCGGGCCSSCSSCTTSHHHH
T ss_pred HHHHHHHHHHHh----CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHH--hCchhhhhhhhcccccccccccccccccch
Confidence 344455555553 346899999999999988887431 0000 1333
Q ss_pred -------EEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCC-C----CCchhH---HHHH
Q 041164 94 -------LFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGL-K----NNCTFC---GVFR 158 (357)
Q Consensus 94 -------v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~-~----~~c~~c---~~~r 158 (357)
++.+++.... .++.+.+.++++|+.+|++++++++.+.+...++.+....+. + ..+..+ ..+|
T Consensus 364 ~~~~~~~~~~v~m~~~~--ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R 441 (634)
T 3ilv_A 364 KKITAVFLTTAYQSTRN--SGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGR 441 (634)
T ss_dssp HHHHHHHEEEEEEECTT--CCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTT
T ss_pred hHhhhheeeeeecCCCC--CCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHH
Confidence 7788876332 356778899999999999999999987664333333322121 1 222333 4566
Q ss_pred HHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHc---
Q 041164 159 RQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFK--- 235 (357)
Q Consensus 159 ~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~--- 235 (357)
..++..+|.+.|+.++.||| .++ +..|-. +...+....+.||.+++|.||+. +++..
T Consensus 442 ~~~l~~~A~~~g~lvlgTgn-ksE--------~~~Gy~----------T~ygD~~~~~~Pl~~l~KteVr~-la~~l~~~ 501 (634)
T 3ilv_A 442 APIIWMLTNVKQALLITTSN-RSE--------GDVGYA----------TMDGDTAGGIAPIAGVDKDFIRS-WLRWAEKN 501 (634)
T ss_dssp HHHHHHHHHHHTCEEBCCCC-HHH--------HHTTCS----------CTTTTTCSSBBTTTTSCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhcCCEEeccCc-hhh--------HhhCCc----------cccCCcccCCcccCCCcHHHHHH-HHHHHHHc
Confidence 78899999999998888886 222 123311 11222234588999999999999 99998
Q ss_pred -CCc
Q 041164 236 -RLD 238 (357)
Q Consensus 236 -~i~ 238 (357)
|+|
T Consensus 502 ~glp 505 (634)
T 3ilv_A 502 RNQH 505 (634)
T ss_dssp SCCG
T ss_pred CCCc
Confidence 898
No 38
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.20 E-value=3.5e-11 Score=124.32 Aligned_cols=166 Identities=16% Similarity=0.076 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCC-CeeEEEEEecCCCCCCChhhHHHHHHHHHHhC
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNY-GLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~-g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg 122 (357)
+..-+++.+++. ..++|+|++|||+||++++.++.+.....+. +.++.+++++... .++.+.+.++++|+.+|
T Consensus 348 ~~~~l~~~l~~~----g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~--~~~~~~~~A~~la~~lg 421 (680)
T 3sdb_A 348 QVSGLEQRLRAL----DYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFA--TGEHTKNNAIKLARALG 421 (680)
T ss_dssp HHHHHHHHHHHT----TSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHc----CCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCC--CCHHHHHHHHHHHHHcC
Confidence 334455555543 3468999999999999988888776444321 2689999998654 34666788999999999
Q ss_pred CCeEEEeeccccCCCHHHHHHH---hCCCCCchhH---HHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCc
Q 041164 123 LPLKIVSYKDLYGWTMDEIVKV---IGLKNNCTFC---GVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDI 196 (357)
Q Consensus 123 i~~~iv~~~~~~~~~i~~~~~~---~~~~~~c~~c---~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~ 196 (357)
++++++++++.+...+..+... ......+..+ ..+|..++..+|.+.|+.++.||| .++. ..|-.
T Consensus 422 i~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn-~sE~--------~~Gy~ 492 (680)
T 3sdb_A 422 VTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGD-LSEL--------ALGWS 492 (680)
T ss_dssp CEEEECCCHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCC-HHHH--------HHTCS
T ss_pred CCEEEEECHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCc-HHhH--------hcCee
Confidence 9999999986653211111110 0111233333 467778899999999997777765 3332 12311
Q ss_pred cccccccccccCC-CCCccccccCCcCCHHHHHHHHHHHc
Q 041164 197 ARLSRCTLITTGE-DGPIPRCKPFKYTYEKEIMFTYAYFK 235 (357)
Q Consensus 197 ~~l~~~~~~~~~~-~~~i~~irPL~~~~k~EI~~~ya~~~ 235 (357)
+.. .+...-+.||.+++|.||+. .++..
T Consensus 493 ----------T~~~gD~~~~~~Pl~~l~K~eVr~-lar~l 521 (680)
T 3sdb_A 493 ----------TYGVGDQMSHYNVNAGVPKTLIQH-LIRWV 521 (680)
T ss_dssp ----------CCSSSTTCCSEETTTTSCHHHHHH-HHHHH
T ss_pred ----------eccCCCccccccccCCCcHHHHHH-HHHHH
Confidence 111 11233478999999999999 98877
No 39
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=99.19 E-value=1.2e-10 Score=104.85 Aligned_cols=136 Identities=18% Similarity=0.098 Sum_probs=92.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC----CChhhHHHHHHHHHHhCCCeEEEeeccccCCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG----YRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWT 137 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~----~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~ 137 (357)
.|++|++|||+||+++|+++.+. |++|.+++..++... +.....+.++.+|+.+|+|++++++......-
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~~------G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e 78 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIKN------RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEKEKE 78 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHT------TCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------C
T ss_pred CEEEEEecCcHHHHHHHHHHHHc------CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCchHH
Confidence 48999999999999999999886 899999887766531 12234567889999999999999986431111
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccc
Q 041164 138 MDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCK 217 (357)
Q Consensus 138 i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ir 217 (357)
.+ -|.+..++.|++.|++|.-..+-..+-..+++..- ++..+.
T Consensus 79 ~e---------------------~l~~~l~~~~i~~vv~Gdi~s~yqr~r~e~vc~~~----------------gl~~~~ 121 (237)
T 3rjz_A 79 VE---------------------DLKRVLSGLKIQGIVAGALASKYQRKRIEKVAKEL----------------GLEVYT 121 (237)
T ss_dssp HH---------------------HHHHHHTTSCCSEEECC---CCSHHHHHHHHHHHT----------------TCEEEC
T ss_pred HH---------------------HHHHHHHhcCCcEEEECCcchHHHHHHHHHHHHHc----------------CCEEEc
Confidence 11 12333345599999999977544434444444332 256789
Q ss_pred cCCcCCHHHHHHHHHHHcCCcccc
Q 041164 218 PFKYTYEKEIMFTYAYFKRLDYFS 241 (357)
Q Consensus 218 PL~~~~k~EI~~~ya~~~~i~~~~ 241 (357)
||......++.. =.-..|+..+-
T Consensus 122 PLW~~d~~~Ll~-e~i~~G~~aii 144 (237)
T 3rjz_A 122 PAWGRDAKEYMR-ELLNLGFKIMV 144 (237)
T ss_dssp SSSSCCHHHHHH-HHHHTTCEEEE
T ss_pred cccCCCHHHHHH-HHHHCCCEEEE
Confidence 999999999998 77788887644
No 40
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.98 E-value=2.4e-09 Score=107.29 Aligned_cols=133 Identities=14% Similarity=0.026 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHH
Q 041164 39 CFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNE 118 (357)
Q Consensus 39 cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~ 118 (357)
-..+.+.+.+.+++++. +..+.+|.+++|||+||++++.++.+.. .++.++++... + ..+.+.++++|
T Consensus 221 ~~~~~l~~~L~~aV~~r--l~sd~~vgv~LSGGlDSS~vaala~~~~------~~v~tfti~~~--~--~~E~~~A~~vA 288 (513)
T 1jgt_A 221 EAVAAVRAALEKAVAQR--VTPGDTPLVVLSGGIDSSGVAACAHRAA------GELDTVSMGTD--T--SNEFREARAVV 288 (513)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCCCEEECCSSHHHHHHHHHHHHHH------SSCEEEEEECS--S--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HhCCCcEEEECCCcHHHHHHHHHHHHhC------CCceEEEcCCC--C--CCHHHHHHHHH
Confidence 34455666666666653 2345689999999999999999998873 24566666543 1 34578899999
Q ss_pred HHhCCCeEEEeeccc-cCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 119 IQYGLPLKIVSYKDL-YGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 119 ~~lgi~~~iv~~~~~-~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
+.+|+++++++++.. +...+++.......++|+..+..+-..++.+.| +.|++++++||.+|++.
T Consensus 289 ~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElf 354 (513)
T 1jgt_A 289 DHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPL 354 (513)
T ss_dssp HHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHH
T ss_pred HHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcc
Confidence 999999999988753 323445554433445677766666666777777 68999999999999863
No 41
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.94 E-value=7.2e-09 Score=104.76 Aligned_cols=136 Identities=11% Similarity=0.188 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCC--------eeEEEEEecCCCCCCChhhHHH
Q 041164 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYG--------LDLFLLSIDEGISGYRDDSLQT 113 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g--------~~v~av~id~g~~~~~~~~~~~ 113 (357)
+.+...+.+++++. +....+|.|++|||+||++++.++.+.......+ -.+..+++.. .+ ..+.+.
T Consensus 209 ~~lr~~L~~aV~~r--l~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~--~~--~~E~~~ 282 (553)
T 1ct9_A 209 NELRQALEDSVKSH--LMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGL--PG--SPDLKA 282 (553)
T ss_dssp HHHHHHHHHHHHHH--TCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEES--TT--CHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecC--CC--CcHHHH
Confidence 34555666666553 2345689999999999999999999863220000 1256666643 22 245789
Q ss_pred HHHHHHHhCCCeEEEeeccccC-CCHHHHHHHhCCCCC-chhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 114 VKRNEIQYGLPLKIVSYKDLYG-WTMDEIVKVIGLKNN-CTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 114 v~~~~~~lgi~~~iv~~~~~~~-~~i~~~~~~~~~~~~-c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
++++|+.+|++++++++..... ..++++......+.+ +..| .+...++.+.|++.|+++|++||.+|++.
T Consensus 283 A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~l~~~a~~~g~~vvLsG~GaDElf 354 (553)
T 1ct9_A 283 AQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRA-STPMYLMSRKIKAMGIKMVLSGEGSDEVF 354 (553)
T ss_dssp HHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHTTCCEEECCTTHHHHH
T ss_pred HHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchH-HHHHHHHHHHHHHcCCeEEEECCCchhcc
Confidence 9999999999999998864311 123344332233332 2222 23355778888999999999999999864
No 42
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.93 E-value=4e-09 Score=105.45 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHH
Q 041164 40 FYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEI 119 (357)
Q Consensus 40 f~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~ 119 (357)
..+.+.+.+.+++++. +....+|.+++|||+||++++.++.+. +.++.++++.... ..+.+.++++|+
T Consensus 219 ~~~~l~~~L~~aV~~r--l~sd~~v~v~LSGGlDSs~vaala~~~------~~~~~~~t~~~~~----~~E~~~A~~vA~ 286 (503)
T 1q15_A 219 LLALIDRYLNAPLEDL--APRFDTVGIPLSGGLDSSLVTALASRH------FKKLNTYSIGTEL----SNEFEFSQQVAD 286 (503)
T ss_dssp HHHHHHHHHHHHHHHH--GGGCSEEEEECCSSHHHHHHHHHHTTT------CSEEEEEEEEETT----BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HhCCCcEEEECCCCHHHHHHHHHHHHh------CCCcEEEEEeCCC----ccHHHHHHHHHH
Confidence 3455556666666553 234568999999999999999999875 4467777775431 345788999999
Q ss_pred HhCCCeEEEeecccc-CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHH
Q 041164 120 QYGLPLKIVSYKDLY-GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIA 184 (357)
Q Consensus 120 ~lgi~~~iv~~~~~~-~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~a 184 (357)
.+|+++++++++... -..+.+.......++|+..+..+...++.+.| +.|+.++++|+.+|++.
T Consensus 287 ~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~~~~VvltG~GaDElf 351 (503)
T 1q15_A 287 ALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQA-QGQVSCMLTGYGSDLLF 351 (503)
T ss_dssp HHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-BTTBSEEECCTTHHHHH
T ss_pred HhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HCCCCEEEeCCChhhhc
Confidence 999999999986531 11122222223345577777767777788888 67999999999999864
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.68 E-value=2.2e-07 Score=94.02 Aligned_cols=171 Identities=12% Similarity=0.048 Sum_probs=109.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHH
Q 041164 35 ICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTV 114 (357)
Q Consensus 35 lC~~cf~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v 114 (357)
.|.+.+.. +.--++..+++.+ -.+++|++|||.||++++.++.+... .-+|.++++.... .++.+.+.+
T Consensus 279 ~~~~~~~a-~~~gl~dy~~k~g----~~~~vlglSGGiDSal~~~la~~alg----~~~v~~v~mp~~~--ts~~t~~~a 347 (565)
T 4f4h_A 279 VEAQVYRA-LVLGVRDYIGKNG----FPGAIIGLSGGVDSALVLAVAVDALG----AERVRAVMMPSRY--TAGISTTDA 347 (565)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTT----CCCEEEECCSSHHHHHHHHHHHHHHC----GGGEEEEECCCTT--CCHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHcC----CCcEEEecCCCccHHHHHHHHHHHhC----CccEEEEeccccc--cccchHHHH
Confidence 44444432 2334455565543 35799999999999999999887632 2367888775432 467888999
Q ss_pred HHHHHHhCCCeEEEeeccccCCCHHHHHHHhCC-CCC---chhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHH
Q 041164 115 KRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGL-KNN---CTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLN 190 (357)
Q Consensus 115 ~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~-~~~---c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~ 190 (357)
+.+++.+|+.+..+++...+......+...... ..- .-.-.++|..+|..+|.+.|.-++-||+ .++.+
T Consensus 348 ~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn-~sE~a------ 420 (565)
T 4f4h_A 348 ADMARRVGVRYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGN-KSEMA------ 420 (565)
T ss_dssp HHHHHHHTCEEEECCCHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC-HHHHH------
T ss_pred HHHHHHhCCceeeeecchHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCc-hhhHh------
Confidence 999999999999999864431100111000000 000 0111457888999999999998888874 44432
Q ss_pred HHccCccccccccccccCCCCCccccccCCcCCHHHHHHHHHHHcC
Q 041164 191 ILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKR 236 (357)
Q Consensus 191 l~rG~~~~l~~~~~~~~~~~~~i~~irPL~~~~k~EI~~~ya~~~~ 236 (357)
.|- .+...+...-+.|+.+++|.+|.. ++++.+
T Consensus 421 --~Gy----------~T~~Gd~~~~~~pi~~l~Kt~v~~-l~~~~~ 453 (565)
T 4f4h_A 421 --VGY----------CTLYGDMAGGFAVIKDIAKTLVYR-LCRYRN 453 (565)
T ss_dssp --HTC----------SCTTTTTCSSEETTTTCCHHHHHH-HHHHHH
T ss_pred --hcc----------ccccCCcccCchhccCccHHHHHH-HHHHHh
Confidence 331 122222234589999999999999 998865
No 44
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=96.04 E-value=0.015 Score=46.69 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=61.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC-----------C----CC-------hhhHHHHHHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS-----------G----YR-------DDSLQTVKRNEI 119 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~-----------~----~~-------~~~~~~v~~~~~ 119 (357)
++|||++.|+..|..++.++..+.+.. +-+++++|+-.... . .. .+.++.+.+.+.
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998888765543 67899999954311 0 00 111233445566
Q ss_pred HhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 120 QYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 120 ~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
..|++...+...-..|.. ...+.++|++.+++.|++|.+..
T Consensus 81 ~~g~~~~~~~~~~~~g~~---------------------~~~I~~~a~~~~~dliV~G~~~~ 121 (147)
T 3hgm_A 81 ELGVPADKVRAFVKGGRP---------------------SRTIVRFARKRECDLVVIGAQGT 121 (147)
T ss_dssp HTTCCGGGEEEEEEESCH---------------------HHHHHHHHHHTTCSEEEECSSCT
T ss_pred hcCCCccceEEEEecCCH---------------------HHHHHHHHHHhCCCEEEEeCCCC
Confidence 678877111111112211 12356789999999999998753
No 45
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=95.80 E-value=0.051 Score=43.26 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=61.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC----CCCC------------ChhhHHHHHHHHHHhCCCe
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG----ISGY------------RDDSLQTVKRNEIQYGLPL 125 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g----~~~~------------~~~~~~~v~~~~~~lgi~~ 125 (357)
++|||++.|...|..++.++..+.+.. +-+++++|+... ..+. ..+..+.+.++++.+|++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRH--DAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPI 80 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCC
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhc--CCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 589999999999998888877765543 678899988522 1111 1223455667777788775
Q ss_pred EEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCC
Q 041164 126 KIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHN 179 (357)
Q Consensus 126 ~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~ 179 (357)
....+. .|.. ...+.++|++.+++.|++|.+
T Consensus 81 ~~~~~~--~g~~---------------------~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 81 SEKLSG--SGDL---------------------GQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp CCEEEE--EECH---------------------HHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEe--cCCH---------------------HHHHHHHHHhcCCCEEEEeCC
Confidence 211111 1211 123567899999999999988
No 46
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=95.78 E-value=0.024 Score=45.35 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=60.7
Q ss_pred CEEEEEecCChh--HHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC-----------------ChhhHHHHHHHHHHhC
Q 041164 62 ERIAIGASGGKD--STVLAFVLSELNRRHNYGLDLFLLSIDEGISGY-----------------RDDSLQTVKRNEIQYG 122 (357)
Q Consensus 62 ~kvlVa~SGG~D--S~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~-----------------~~~~~~~v~~~~~~lg 122 (357)
++|+|++.|+.. |..++.++..+.+.. +-+++++|+-.....+ ..+..+.++++++.+|
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID--DAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFS 79 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH--TCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc--CCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999 888888777765442 6789999996542211 0112344566666777
Q ss_pred CCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 123 LPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 123 i~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
++...+...-..|.. ...+.++|++.+++.|++|.+.
T Consensus 80 ~~~~~v~~~~~~g~~---------------------~~~I~~~a~~~~~dliV~G~~~ 116 (143)
T 3fdx_A 80 IPEDRMHFHVAEGSP---------------------KDKILALAKSLPADLVIIASHR 116 (143)
T ss_dssp CCGGGEEEEEEESCH---------------------HHHHHHHHHHTTCSEEEEESSC
T ss_pred CCCCceEEEEEecCh---------------------HHHHHHHHHHhCCCEEEEeCCC
Confidence 653222221122311 1235678999999999999974
No 47
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=95.42 E-value=0.064 Score=43.17 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=61.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC-------C--------CC----hhhHHHHHHHHHHh
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS-------G--------YR----DDSLQTVKRNEIQY 121 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~-------~--------~~----~~~~~~v~~~~~~l 121 (357)
-++|||++.|...|..++.++..+.... +-+++++|+-.... + .. .+..+.+.++++.+
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI--GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999998888775543 67899999853211 0 00 12234566677788
Q ss_pred CCCe-EEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 122 GLPL-KIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 122 gi~~-~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
|++. ... + ..|.. ...+.++|++.+++.|++|.+...
T Consensus 84 ~~~~~~~~-~--~~g~~---------------------~~~I~~~a~~~~~dliV~G~~~~~ 121 (150)
T 3tnj_A 84 GIDPAHRW-L--VWGEP---------------------REEIIRIAEQENVDLIVVGSHGRH 121 (150)
T ss_dssp TCCGGGEE-E--EESCH---------------------HHHHHHHHHHTTCSEEEEEEC---
T ss_pred CCCcceEE-E--ecCCH---------------------HHHHHHHHHHcCCCEEEEecCCCC
Confidence 8874 221 1 11211 123567899999999999987654
No 48
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=95.39 E-value=0.14 Score=40.53 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=58.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC-CCC--------h----hhHHHHHHHHHHhCC-CeEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS-GYR--------D----DSLQTVKRNEIQYGL-PLKI 127 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~-~~~--------~----~~~~~v~~~~~~lgi-~~~i 127 (357)
++|||++.|...|..++.++..+.+.. +-+++++|+..... ++. + ...+.+.++++..|+ ++.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 80 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDA 80 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 589999999999998888877765443 67899999864221 110 0 112233444444677 5443
Q ss_pred EeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 128 VSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 128 v~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
.-. .|.. ...+.++|++.+++.|++|++.
T Consensus 81 ~~~---~g~~---------------------~~~I~~~a~~~~~dliV~G~~~ 109 (137)
T 2z08_A 81 LLL---EGVP---------------------AEAILQAARAEKADLIVMGTRG 109 (137)
T ss_dssp EEE---ESSH---------------------HHHHHHHHHHTTCSEEEEESSC
T ss_pred EEE---ecCH---------------------HHHHHHHHHHcCCCEEEECCCC
Confidence 311 1211 1235678999999999999875
No 49
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=95.17 E-value=0.23 Score=44.89 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=68.3
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHH
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
..++|+|++.|+..|.-++..+..+.+.. +.++.++|+..... ..+..+.+.+..+..|++....-. .| ..
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~---~g-~~- 239 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKT--GGELHIIHVSEDGD--KTADLRVMEEVIGAEGIEVHVHIE---SG-TP- 239 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEECSSSC--CHHHHHHHHHHHHHTTCCEEEEEE---CS-CH-
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhc--CCEEEEEEEccCch--HHHHHHHHHHHHHHcCCcEEEEEe---cC-CH-
Confidence 34789999999999998888888765443 67899999976432 345566777777888988554322 12 11
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 140 EIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 140 ~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
...+.++|++.+++.|++|.+...
T Consensus 240 -------------------~~~I~~~a~~~~~dLlV~G~~~~~ 263 (294)
T 3loq_A 240 -------------------HKAILAKREEINATTIFMGSRGAG 263 (294)
T ss_dssp -------------------HHHHHHHHHHTTCSEEEEECCCCS
T ss_pred -------------------HHHHHHHHHhcCcCEEEEeCCCCC
Confidence 123567889999999999987643
No 50
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=95.04 E-value=0.29 Score=39.90 Aligned_cols=96 Identities=11% Similarity=-0.000 Sum_probs=63.1
Q ss_pred CEEEEEecC-ChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChh-------hHHHHHHHHHHhCCCeEEEeeccc
Q 041164 62 ERIAIGASG-GKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDD-------SLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 62 ~kvlVa~SG-G~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~-------~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
++|||++.| ...|..++.++..+.... +-+++++|+-.......+. .++.+.+.+...|+++.+...- .
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v-~ 101 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLV-R 101 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-S
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEe-c
Confidence 589999999 999999998888775543 6789999996543221111 1233444556678877653211 1
Q ss_pred cCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 134 YGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 134 ~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
.|.. ...+.++|++.+++.|++|.+..
T Consensus 102 ~G~~---------------------~~~I~~~a~~~~~DLIV~G~~g~ 128 (155)
T 3dlo_A 102 GKEP---------------------PDDIVDFADEVDAIAIVIGIRKR 128 (155)
T ss_dssp SSCH---------------------HHHHHHHHHHTTCSEEEEECCEE
T ss_pred CCCH---------------------HHHHHHHHHHcCCCEEEECCCCC
Confidence 1211 12366789999999999998753
No 51
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=95.02 E-value=0.12 Score=40.77 Aligned_cols=40 Identities=8% Similarity=0.133 Sum_probs=33.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHh-hhCCCCeeEEEEEecCCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELN-RRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~-~~~~~g~~v~av~id~g~ 103 (357)
++|||++.|...|..++.++..+. +. .+-+++++|+-...
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~ 42 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEF 42 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCC
Confidence 479999999999999999998886 54 37899999997654
No 52
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=94.91 E-value=0.29 Score=38.88 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=31.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
++|||++.|...|..++.++..+.... +-+++++|+-..
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~ 44 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH--QANLTALYVVDD 44 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEEC
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecC
Confidence 589999999999999998888765543 678999998543
No 53
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=94.79 E-value=0.28 Score=40.39 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=60.6
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEE--EecCCCC---C-----------CCh---hhHHHHHHHHH
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLL--SIDEGIS---G-----------YRD---DSLQTVKRNEI 119 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av--~id~g~~---~-----------~~~---~~~~~v~~~~~ 119 (357)
....+|||++.|...|..++.++.++.. . +-+++++ |+-.... + ..+ +.++.+.+.+.
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC--------------------CCTHHHHHHHHHHHHH
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999988888765 3 6788898 7632110 0 001 11233334445
Q ss_pred HhCCC-eEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 120 QYGLP-LKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 120 ~lgi~-~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
..|++ +...-. .|.. ...+.++|++.+++.|++|.+...
T Consensus 92 ~~gv~~v~~~v~---~G~~---------------------~~~I~~~a~~~~~DLIV~G~~g~~ 131 (163)
T 1tq8_A 92 NAGAKNVEERPI---VGAP---------------------VDALVNLADEEKADLLVVGNVGLS 131 (163)
T ss_dssp TTTCCEEEEEEE---CSSH---------------------HHHHHHHHHHTTCSEEEEECCCCC
T ss_pred HcCCCeEEEEEe---cCCH---------------------HHHHHHHHHhcCCCEEEECCCCCC
Confidence 56777 544322 2211 123567899999999999988644
No 54
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=94.63 E-value=0.31 Score=39.98 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=31.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEec
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSID 100 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id 100 (357)
-++|||++.|..+|..++.++..+... .+-+++++|+-
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~ 42 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKM--EVGEVILLHVI 42 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCS--CCSEEEEEEEE
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHh--cCCEEEEEEEe
Confidence 368999999999999999888887544 36789999874
No 55
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=93.99 E-value=0.43 Score=38.68 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=31.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEec
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSID 100 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id 100 (357)
-.+|||++.|...|..++.++.++... .+-+++++|+-
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~ 42 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVI 42 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhh--cCCeEEEEEEe
Confidence 368999999999999999888887543 36789999884
No 56
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=93.50 E-value=0.6 Score=37.60 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=59.0
Q ss_pred CCEEEEEec--CChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC-----CCh-----------hhHHHHHHHHHHhC
Q 041164 61 GERIAIGAS--GGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG-----YRD-----------DSLQTVKRNEIQYG 122 (357)
Q Consensus 61 ~~kvlVa~S--GG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~-----~~~-----------~~~~~v~~~~~~lg 122 (357)
-++|||++. |...|..++.++..+.+.. +-+++++|+-..... ..+ +.++.+.+.++..|
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 92 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRG 92 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 468999999 9999999998888765543 678999998543211 111 11222333355668
Q ss_pred CC-eEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHH-HHHCCCCEEEcCCChh
Q 041164 123 LP-LKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRG-ASLLKVDKIATGHNAD 181 (357)
Q Consensus 123 i~-~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~-A~~~g~~~I~tGh~~d 181 (357)
++ +...-.. .|... ..+.++ |++.+++.|++|.+..
T Consensus 93 ~~~~~~~v~~--~g~~~---------------------~~I~~~~a~~~~~DlIV~G~~g~ 130 (156)
T 3fg9_A 93 VNQVEPLVYE--GGDVD---------------------DVILEQVIPEFKPDLLVTGADTE 130 (156)
T ss_dssp CSSEEEEEEE--CSCHH---------------------HHHHHTHHHHHCCSEEEEETTCC
T ss_pred CCceEEEEEe--CCCHH---------------------HHHHHHHHHhcCCCEEEECCCCC
Confidence 74 4433221 02111 224566 8899999999998753
No 57
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=93.23 E-value=0.35 Score=43.55 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=61.6
Q ss_pred CCCEEEEEecCChh-------HHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC------------ChhhHHHHHHHHHH
Q 041164 60 AGERIAIGASGGKD-------STVLAFVLSELNRRHNYGLDLFLLSIDEGISGY------------RDDSLQTVKRNEIQ 120 (357)
Q Consensus 60 ~~~kvlVa~SGG~D-------S~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~------------~~~~~~~v~~~~~~ 120 (357)
+.++|+|++.|+.. |.-++..+..+.+.. +-+++++|+....... ..+..+.+.++++.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA--KATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAE 210 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc--CCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999998 888888887765553 6799999996542110 01123455667788
Q ss_pred hCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 121 YGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 121 lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
+|++.....+. .|. . ...+.++|++.+++.|++|.+..
T Consensus 211 ~g~~~~~~~v~--~g~----~-----------------~~~I~~~a~~~~~dLiVmG~~g~ 248 (290)
T 3mt0_A 211 YGFSDEQLHIE--EGP----A-----------------DVLIPRTAQKLDAVVTVIGTVAR 248 (290)
T ss_dssp HTCCTTTEEEE--ESC----H-----------------HHHHHHHHHHHTCSEEEEECCSS
T ss_pred cCCCcceEEEe--ccC----H-----------------HHHHHHHHHhcCCCEEEECCCCC
Confidence 88742111111 121 1 12356788999999999998753
No 58
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=92.76 E-value=0.77 Score=41.24 Aligned_cols=96 Identities=11% Similarity=-0.014 Sum_probs=66.3
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCH
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTM 138 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i 138 (357)
..-++|||++.|+..|..++.+...+.+.. +.+++++|+... ....+.++.+.+.+...|+++...-.. .|..
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~--~g~~- 77 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEKR--RDHSAALNDLAQELREEGYSVSTNQAW--KDSL- 77 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECSS--SCCHHHHHHHHHHHHHTTCCEEEEEEC--SSSH-
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeCc--HHHHHHHHHHHHHHhhCCCeEEEEEEe--CCCH-
Confidence 344699999999999999988888765543 678999999763 223444555555566778887665331 1111
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 139 DEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 139 ~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
...+.+.|++.+++.|++|.+..
T Consensus 78 --------------------~~~i~~~a~~~~~dliV~G~~~~ 100 (290)
T 3mt0_A 78 --------------------HQTIIAEQQAEGCGLIIKQHFPD 100 (290)
T ss_dssp --------------------HHHHHHHHHHHTCSEEEEECCCS
T ss_pred --------------------HHHHHHHHHhcCCCEEEEecccC
Confidence 12255678889999999998764
No 59
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=92.63 E-value=0.36 Score=37.39 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=46.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC-----C-----Ch---hhHHHHHHHHHHhCCCeEE
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG-----Y-----RD---DSLQTVKRNEIQYGLPLKI 127 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~-----~-----~~---~~~~~v~~~~~~lgi~~~i 127 (357)
.-+|++..+||..|+.|..-+++..+.. |+++.+.....+.-. + .+ -..+.+++.+..+|+|+.+
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~--gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~v 83 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLT--EVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVA 83 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHH--TCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEE
Confidence 4489999999999999988888776554 455554443332211 0 11 1256778888889999999
Q ss_pred Eeec
Q 041164 128 VSYK 131 (357)
Q Consensus 128 v~~~ 131 (357)
++..
T Consensus 84 I~~~ 87 (108)
T 3nbm_A 84 TRGM 87 (108)
T ss_dssp CCHH
T ss_pred eCHH
Confidence 8764
No 60
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=91.65 E-value=1 Score=35.28 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=31.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEec
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSID 100 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id 100 (357)
++|||++.|...|..++.++..+.+. .+-+++++|+-
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~ 41 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVL 41 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEEC
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEe
Confidence 58999999999999988888877554 37789999985
No 61
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=91.16 E-value=1.3 Score=36.31 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=29.7
Q ss_pred CEEEEEecCCh---------hHHHHHHHHHHHh-hhCCCCeeEEEEEec
Q 041164 62 ERIAIGASGGK---------DSTVLAFVLSELN-RRHNYGLDLFLLSID 100 (357)
Q Consensus 62 ~kvlVa~SGG~---------DS~~LL~ll~~~~-~~~~~g~~v~av~id 100 (357)
.+|||++.|.. .|..++.++..+. +....+-+++++|+.
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~ 54 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQ 54 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEE
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEe
Confidence 58999999999 8888888887753 221136789999984
No 62
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=90.61 E-value=0.91 Score=41.18 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=61.2
Q ss_pred CCCEEEEEecCChh-------HHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC--------Ch---------hhHHHHH
Q 041164 60 AGERIAIGASGGKD-------STVLAFVLSELNRRHNYGLDLFLLSIDEGISGY--------RD---------DSLQTVK 115 (357)
Q Consensus 60 ~~~kvlVa~SGG~D-------S~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~--------~~---------~~~~~v~ 115 (357)
...+|+|++.|+.+ |.-++..+..+.....++.+++++|+....... .. +..+.+.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMK 234 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHH
Confidence 45799999999994 577777776664442125689999986432111 10 1134566
Q ss_pred HHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 116 RNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 116 ~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
++++.+|++.....+. .|.. ...+.++|++.+++.|++|.+..
T Consensus 235 ~~~~~~~~~~~~~~v~--~g~~---------------------~~~I~~~a~~~~~dLiV~G~~g~ 277 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVK--EGLP---------------------EQVIPQVCEELNAGIVVLGILGR 277 (319)
T ss_dssp HHHHHTTCCGGGEEEE--ESCH---------------------HHHHHHHHHHTTEEEEEEECCSC
T ss_pred HHHHHhCCCcccEEEe--cCCc---------------------HHHHHHHHHHhCCCEEEEeccCc
Confidence 6778888752111111 1211 23366789999999999998754
No 63
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=85.19 E-value=18 Score=32.76 Aligned_cols=107 Identities=7% Similarity=-0.002 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCC------CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHH
Q 041164 42 EVFEEEIHQVIVGNQL------FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVK 115 (357)
Q Consensus 42 ~~~~~kv~~~i~k~~l------~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~ 115 (357)
..++..|...-.++.| .....||+|.+||+- +.|-.++...... .++.++.+|.-|+.- +.
T Consensus 65 ~~L~~~f~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~g-~l~~~i~~Visn~~~----------~~ 131 (286)
T 3n0v_A 65 AGFRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKAD--HCLNDLLYRQRIG-QLGMDVVAVVSNHPD----------LE 131 (286)
T ss_dssp HHHHHHHHHHHGGGTCEEEEECTTCCCEEEEEESSCC--HHHHHHHHHHHTT-SSCCEEEEEEESSST----------TH
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCCcEEEEEEeCCC--CCHHHHHHHHHCC-CCCcEEEEEEeCcHH----------HH
Confidence 4455555444444443 123458999999983 5666666654322 245788888777642 24
Q ss_pred HHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 116 RNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 116 ~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
.+|+++|||++.++.... +-.+. -..+.+..++.+.+.|++...+.
T Consensus 132 ~~A~~~gIp~~~~~~~~~---~r~~~-----------------~~~~~~~l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 132 PLAHWHKIPYYHFALDPK---DKPGQ-----------------ERKVLQVIEETGAELVILARYMQ 177 (286)
T ss_dssp HHHHHTTCCEEECCCBTT---BHHHH-----------------HHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHHcCCCEEEeCCCcC---CHHHH-----------------HHHHHHHHHhcCCCEEEeccccc
Confidence 569999999998765321 10111 11244555677999999887764
No 64
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=84.27 E-value=11 Score=34.45 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=56.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
..||+|.+||+ .+.|..++...... .++.++.+|.-|+.- ++.+|+++|||++.++..... -++
T Consensus 105 ~~ri~vl~Sg~--g~nl~~ll~~~~~g-~l~~~I~~Visn~~~----------~~~~A~~~gIp~~~~~~~~~~---r~~ 168 (302)
T 3o1l_A 105 KKRVVLMASRE--SHCLADLLHRWHSD-ELDCDIACVISNHQD----------LRSMVEWHDIPYYHVPVDPKD---KEP 168 (302)
T ss_dssp CCEEEEEECSC--CHHHHHHHHHHHTT-CSCSEEEEEEESSST----------THHHHHTTTCCEEECCCCSSC---CHH
T ss_pred CcEEEEEEeCC--chhHHHHHHHHHCC-CCCcEEEEEEECcHH----------HHHHHHHcCCCEEEcCCCcCC---HHH
Confidence 45899999998 34666667655332 246788888777632 345799999999988653211 011
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
. -..+.+..++.+.+.|++.-.+.
T Consensus 169 ~-----------------~~~~~~~l~~~~~DliVlagym~ 192 (302)
T 3o1l_A 169 A-----------------FAEVSRLVGHHQADVVVLARYMQ 192 (302)
T ss_dssp H-----------------HHHHHHHHHHTTCSEEEESSCCS
T ss_pred H-----------------HHHHHHHHHHhCCCEEEHhHhhh
Confidence 1 11244556778999999887653
No 65
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=84.19 E-value=1.9 Score=38.59 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=60.8
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC------CC-Ch-----------hhHHHHHHHHHH
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS------GY-RD-----------DSLQTVKRNEIQ 120 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~------~~-~~-----------~~~~~v~~~~~~ 120 (357)
..-++|||++.|...|..++.++..+.+.. +-++.++|+-.... +. .+ +.++.+.+.+..
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKKVG--VEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA 97 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHHTT--CCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999999988888776553 77899998843221 00 00 112233344555
Q ss_pred hCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHH
Q 041164 121 YGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDI 183 (357)
Q Consensus 121 lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ 183 (357)
.|+++..+.+.. .| ... ..+ ++++.+++.|++|.+....
T Consensus 98 ~g~~~~~~~v~~-~g----~~~-----------------~~I--~a~~~~~DliV~G~~g~~~ 136 (294)
T 3loq_A 98 AGIKAEVIKPFP-AG----DPV-----------------VEI--IKASENYSFIAMGSRGASK 136 (294)
T ss_dssp TTCEEEECSSCC-EE----CHH-----------------HHH--HHHHTTSSEEEEECCCCCH
T ss_pred cCCCcceeEeec-cC----Chh-----------------Hhe--eeccCCCCEEEEcCCCCcc
Confidence 677766511110 11 111 113 7889999999999876543
No 66
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=83.15 E-value=22 Score=32.28 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=56.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
..||+|.+||.- +.|..++...... .++.++.+|.-|+.- +..+|+++|||++.++.... +-.+
T Consensus 95 ~~ri~vl~Sg~g--~~l~~ll~~~~~g-~l~~~i~~Visn~~~----------~~~~A~~~gIp~~~~~~~~~---~r~~ 158 (292)
T 3lou_A 95 RPKVLIMVSKLE--HCLADLLFRWKMG-ELKMDIVGIVSNHPD----------FAPLAAQHGLPFRHFPITAD---TKAQ 158 (292)
T ss_dssp CCEEEEEECSCC--HHHHHHHHHHHHT-SSCCEEEEEEESSST----------THHHHHHTTCCEEECCCCSS---CHHH
T ss_pred CCEEEEEEcCCC--cCHHHHHHHHHcC-CCCcEEEEEEeCcHH----------HHHHHHHcCCCEEEeCCCcC---CHHH
Confidence 458999999983 4666666654332 245788888777642 23569999999998765321 1011
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
. -..+.+..++.+.+.|++...+.
T Consensus 159 ~-----------------~~~~~~~l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 159 Q-----------------EAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp H-----------------HHHHHHHHHHHTCSEEEESSCCS
T ss_pred H-----------------HHHHHHHHHHhCCCEEEecCchh
Confidence 1 12244555677999999987764
No 67
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=82.25 E-value=9.7 Score=34.04 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCC---hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGG---KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRN 117 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG---~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~ 117 (357)
.+.+++++...+.+. ++-.-+-=.-|+ .|...|-.++..+.++ | .+++|.+..+.+ .+.++
T Consensus 109 ~~ei~~~l~~al~~v----P~a~GvnNHmGS~~T~~~~~M~~vm~~L~~~---g----L~FlDS~Ts~~S-----~a~~~ 172 (261)
T 2qv5_A 109 AKVNIDRLHRSMAKI----TNYTGVMNYLGGRFLAEQSALEPVMRDIGKR---G----LLFLDDGSSAQS-----LSGGI 172 (261)
T ss_dssp HHHHHHHHHHHHTTC----CCCSEEEEEECTTGGGCHHHHHHHHHHHHHT---T----CEEEECSCCTTC-----CHHHH
T ss_pred HHHHHHHHHHHHHHC----CCcEEEecccccchhcCHHHHHHHHHHHHHC---C----CEEEcCCCCccc-----HHHHH
Confidence 355677777777653 222223333344 4667777777777543 3 467898875432 35678
Q ss_pred HHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHH
Q 041164 118 EIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVL 188 (357)
Q Consensus 118 ~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l 188 (357)
|+++|+|+...++--....+.+.+. -....+..+|++.| .+|++||-..+.++.+.
T Consensus 173 A~~~gvp~~~rdvFLD~~~~~~~I~--------------~qL~~a~~~Ar~~G-~AIaIGhp~p~Ti~aL~ 228 (261)
T 2qv5_A 173 AKAISAPQGFADVLLDGEVTEASIL--------------RKLDDLERIARRNG-QAIGVASAFDESIAAIS 228 (261)
T ss_dssp HHHHTCCEEECSEETTSSCSHHHHH--------------HHHHHHHHHHHHHS-EEEEEEECCHHHHHHHH
T ss_pred HHHcCCCeEEeeeecCCCCCHHHHH--------------HHHHHHHHHHHhcC-cEEEEeCCCHHHHHHHH
Confidence 9999999988554211223333333 22455778899988 68999999887654433
No 68
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=82.20 E-value=7.4 Score=34.95 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
.++|+|++.|+..|..++.++..+.... +.+++++|+...
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~ 210 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASRR--NVDLVALHAWSD 210 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHHT--TCCEEEEEESCS
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhc--CCEEEEEEEeec
Confidence 4689999999999998888888775543 678999999643
No 69
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=81.21 E-value=5.5 Score=35.83 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=58.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC----CCC-Chh------------hHHHHHHHH---HH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI----SGY-RDD------------SLQTVKRNE---IQ 120 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~----~~~-~~~------------~~~~v~~~~---~~ 120 (357)
-++|||++.|...|..++.+...+.+.. +.+++++|+-... ..+ ... ..+.++++. ..
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE 84 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999988888777765543 6789999984321 110 000 011223333 33
Q ss_pred hCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 121 YGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 121 lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
.|+++...-.. .|.. ...+.+.|++.+++.|++|.+...
T Consensus 85 ~~v~~~~~~~~--~g~~---------------------~~~i~~~a~~~~~DLiV~G~~g~~ 123 (319)
T 3olq_A 85 AGIQIDIKVIW--HNRP---------------------YEAIIEEVITDKHDLLIKMAHQHD 123 (319)
T ss_dssp TTCCEEEEEEE--CSCH---------------------HHHHHHHHHHHTCSEEEEEEBCC-
T ss_pred cCCeEEEEEEe--cCCh---------------------HHHHHHHHHhcCCCEEEEecCcCc
Confidence 47776654330 1111 123556788889999999988643
No 70
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=79.79 E-value=7.3 Score=34.50 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCEEEEEecCC---hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHH
Q 041164 41 YEVFEEEIHQVIVGNQLFKAGERIAIGASGG---KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRN 117 (357)
Q Consensus 41 ~~~~~~kv~~~i~k~~l~~~~~kvlVa~SGG---~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~ 117 (357)
.+.+++++...+...- +-.-+--.=|+ .|..++-.++..+.++ | .+++|.+..+.+ .+.+.
T Consensus 82 ~~ei~~~l~~al~~vP----~a~GvnNHmGS~~T~~~~~m~~vm~~l~~~---g----L~fvDS~Ts~~S-----~a~~~ 145 (245)
T 2nly_A 82 VGEVKSRVRKAFDDIP----YAVGLNNHMGSKIVENEKIMRAILEVVKEK---N----AFIIDSGTSPHS-----LIPQL 145 (245)
T ss_dssp HHHHHHHHHHHHHHST----TCCEEEEEECTTGGGCHHHHHHHHHHHHHT---T----CEEEECCCCSSC-----SHHHH
T ss_pred HHHHHHHHHHHHHHCC----CcEEEecccccchhcCHHHHHHHHHHHHHC---C----CEEEcCCCCccc-----HHHHH
Confidence 3567778888877642 21222222233 3666777777777543 4 578898875432 35678
Q ss_pred HHHhCCCeEEEeecccc-CCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhH
Q 041164 118 EIQYGLPLKIVSYKDLY-GWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182 (357)
Q Consensus 118 ~~~lgi~~~iv~~~~~~-~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD 182 (357)
|+++|+|+...++--.. ..+.+.+.+ ....+..+|++.| .+|++||-..+
T Consensus 146 A~~~gvp~~~rdvFLD~~~~~~~~I~~--------------ql~~a~~~A~~~G-~aIaIGhp~p~ 196 (245)
T 2nly_A 146 AEELEVPYATRSIFLDNTHSSRKEVIK--------------NMRKLAKKAKQGS-EPIGIGHVGVR 196 (245)
T ss_dssp HHHTTCCEEECCEESCCTTCCHHHHHH--------------HHHHHHHHHHTTS-CCEEEEECSTT
T ss_pred HHHcCCCeEEeeEECCCCCCCHHHHHH--------------HHHHHHHHHhhcC-cEEEEECCCCC
Confidence 99999999885542122 233344332 2344778898887 57999998765
No 71
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=78.17 E-value=4.6 Score=35.35 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=43.6
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
+.++|+|++.|+.+|..++..+..+.... +.+++++|+..... ...+..+.+.+.....|++..+.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~--~a~l~ll~v~~~~~-~~~~~l~~~~~~l~~~~~~~~~~ 218 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARAL--GLGVRVVSVHEDPA-RAEAWALEAEAYLRDHGVEASAL 218 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHH--TCCEEEEEECSSHH-HHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcC--CCEEEEEEEcCcHH-HHHHHHHHHHHHHHHcCCceEEE
Confidence 34689999999999988887776654332 66899999965320 01223444555566678876553
No 72
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=76.24 E-value=2.2 Score=28.63 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=21.7
Q ss_pred CcccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 13 GRLCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
...|..|+. +-.++.. -+..+|+-||-+..
T Consensus 17 ~nrC~~cGr-~rg~iRk-fgl~lcR~cFRe~A 46 (55)
T 2xzm_N 17 SKECRVCGA-RQGLITK-YEMMTCRRCFREQA 46 (55)
T ss_dssp GCCCTTTCC-SSTTCCC-SSSCCCHHHHHHHH
T ss_pred ceEeecCCC-CcchHHH-hCCchhhHHHHHHH
Confidence 346999996 5445443 47889999997654
No 73
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=75.90 E-value=2.7 Score=28.26 Aligned_cols=29 Identities=38% Similarity=0.739 Sum_probs=21.8
Q ss_pred cccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
..|..|+. +--++..+ +..+|+.||-+..
T Consensus 19 ~rC~vcGr-~~g~iRkf-Gl~lcR~cfRe~A 47 (56)
T 3u5c_d 19 RQCRVCSS-HTGLIRKY-GLNICRQCFREKA 47 (56)
T ss_dssp CCCTTTCC-CSSEECGG-GCCEEHHHHHHHH
T ss_pred ceeecCCC-Cccccccc-CcchhHHHHHHHH
Confidence 46999996 65555544 7789999997654
No 74
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=75.44 E-value=4.6 Score=34.91 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=30.6
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
++.+|+|++|||.-..-...++..+.+. |.+|+++.
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~---g~eV~vv~ 38 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQE---EREVHFLI 38 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 3478999999999999999999988664 78888874
No 75
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=75.18 E-value=15 Score=32.74 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
..+|||++.|...|..++.+...+.+.. +.+++++|+-.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~ 57 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVS 57 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEec
Confidence 4689999999999998888777665443 67899999854
No 76
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=74.67 E-value=9.4 Score=33.29 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=29.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEec
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSID 100 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id 100 (357)
.+|||++.|...|..++.+...+.+.. +-+++++|+-
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~ 37 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVV 37 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEe
Confidence 379999999999999888887765543 6788888873
No 77
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.95 E-value=3.6 Score=27.69 Aligned_cols=29 Identities=38% Similarity=0.698 Sum_probs=21.3
Q ss_pred cccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
..|..|+. +--++.. -|..+|+.||-+..
T Consensus 19 ~rC~vcGr-~~g~iRk-fGL~~cR~cfRe~A 47 (56)
T 3j20_P 19 RRCIRCGQ-YGPIIRI-QGLMLCRHCFREVA 47 (56)
T ss_dssp CCCSSSCC-SSSCCCT-TTCCCCHHHHHHHH
T ss_pred eEeecCCC-Ccccccc-cCChHHHHHHHHHH
Confidence 46999996 5555544 47777999997654
No 78
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=72.54 E-value=33 Score=29.57 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=54.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
.||+|.+||+-. .|-.++..... ..+.++.+|.-|+. ..+.+.|+++|||++..+.+. +. +-+++
T Consensus 13 ~ri~vl~SG~gs--nl~all~~~~~--~~~~eI~~Vis~~~---------a~~~~~A~~~gIp~~~~~~~~-~~-~r~~~ 77 (215)
T 3da8_A 13 ARLVVLASGTGS--LLRSLLDAAVG--DYPARVVAVGVDRE---------CRAAEIAAEASVPVFTVRLAD-HP-SRDAW 77 (215)
T ss_dssp EEEEEEESSCCH--HHHHHHHHSST--TCSEEEEEEEESSC---------CHHHHHHHHTTCCEEECCGGG-SS-SHHHH
T ss_pred cEEEEEEeCChH--HHHHHHHHHhc--cCCCeEEEEEeCCc---------hHHHHHHHHcCCCEEEeCccc-cc-chhhh
Confidence 379999999843 44445554422 24678888766543 135778999999999986542 11 11111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
-..+.+..++.+.+.|++.....
T Consensus 78 -----------------d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 78 -----------------DVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp -----------------HHHHHHHHHTTCCSEEEEEECCS
T ss_pred -----------------hHHHHHHHHhhCCCEEEEcCchh
Confidence 12244566778999998876653
No 79
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=71.89 E-value=47 Score=28.40 Aligned_cols=89 Identities=20% Similarity=0.164 Sum_probs=54.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||.|.+||+.+ .+..++..+... .++.++.+|.-|..- ..+.+.|+++|||+.+++.... . +-+++.
T Consensus 5 ki~vl~sG~g~--~~~~~l~~l~~~-~l~~~I~~Vit~~~~--------~~v~~~A~~~gIp~~~~~~~~~-~-~~~~~~ 71 (212)
T 3av3_A 5 RLAVFASGSGT--NFQAIVDAAKRG-DLPARVALLVCDRPG--------AKVIERAARENVPAFVFSPKDY-P-SKAAFE 71 (212)
T ss_dssp EEEEECCSSCH--HHHHHHHHHHTT-CCCEEEEEEEESSTT--------CHHHHHHHHTTCCEEECCGGGS-S-SHHHHH
T ss_pred EEEEEEECCcH--HHHHHHHHHHhC-CCCCeEEEEEeCCCC--------cHHHHHHHHcCCCEEEeCcccc-c-chhhhH
Confidence 79999999865 344455554322 135788777665321 1477889999999988654321 1 111111
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
..+.+..++.+.+.|++.....
T Consensus 72 -----------------~~~~~~l~~~~~Dliv~a~y~~ 93 (212)
T 3av3_A 72 -----------------SEILRELKGRQIDWIALAGYMR 93 (212)
T ss_dssp -----------------HHHHHHHHHTTCCEEEESSCCS
T ss_pred -----------------HHHHHHHHhcCCCEEEEchhhh
Confidence 1233445678999998877653
No 80
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=70.92 E-value=45 Score=28.70 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=54.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
.||+|.+||+- +.|-.++...... .+.++.+|.-|..- ....+.|+++|||+++++.... . +-++.
T Consensus 6 ~riavl~SG~G--snl~all~~~~~~--~~~eI~~Vis~~~~--------a~~~~~A~~~gIp~~~~~~~~~-~-~r~~~ 71 (215)
T 3tqr_A 6 LPIVVLISGNG--TNLQAIIGAIQKG--LAIEIRAVISNRAD--------AYGLKRAQQADIPTHIIPHEEF-P-SRTDF 71 (215)
T ss_dssp EEEEEEESSCC--HHHHHHHHHHHTT--CSEEEEEEEESCTT--------CHHHHHHHHTTCCEEECCGGGS-S-SHHHH
T ss_pred cEEEEEEeCCc--HHHHHHHHHHHcC--CCCEEEEEEeCCcc--------hHHHHHHHHcCCCEEEeCcccc-C-chhHh
Confidence 47999999973 3444445444322 36788888766431 1235789999999998765321 0 00111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
-..+.+..++.+.+.|++.....
T Consensus 72 -----------------d~~~~~~l~~~~~Dliv~agy~~ 94 (215)
T 3tqr_A 72 -----------------ESTLQKTIDHYDPKLIVLAGFMR 94 (215)
T ss_dssp -----------------HHHHHHHHHTTCCSEEEESSCCS
T ss_pred -----------------HHHHHHHHHhcCCCEEEEccchh
Confidence 12345566788999999877653
No 81
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=70.37 E-value=48 Score=28.41 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=55.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
.||+|.+||+- +-|-.++...... .+..++.+|.-|... ..+.+.|+++|||+.+++..... +-++.
T Consensus 3 ~riavl~Sg~G--snl~ali~~~~~~-~l~~eI~~Visn~~~--------a~v~~~A~~~gIp~~~~~~~~~~--~r~~~ 69 (211)
T 3p9x_A 3 KRVAIFASGSG--TNAEAIIQSQKAG-QLPCEVALLITDKPG--------AKVVERVKVHEIPVCALDPKTYP--SKEAY 69 (211)
T ss_dssp CEEEEECCTTC--HHHHHHHHHHHTT-CCSSEEEEEEESCSS--------SHHHHHHHTTTCCEEECCGGGSS--SHHHH
T ss_pred CEEEEEEeCCc--hHHHHHHHHHHcC-CCCcEEEEEEECCCC--------cHHHHHHHHcCCCEEEeChhhcC--chhhh
Confidence 37999999973 4455555544222 235688887766431 24788999999999887643211 10111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
-..+.+..++.+.+.|++.....
T Consensus 70 -----------------d~~~~~~l~~~~~Dliv~agy~~ 92 (211)
T 3p9x_A 70 -----------------EIEVVQQLKEKQIDFVVLAGYMR 92 (211)
T ss_dssp -----------------HHHHHHHHHHTTCCEEEESSCCS
T ss_pred -----------------HHHHHHHHHhcCCCEEEEeCchh
Confidence 12244556778999998877654
No 82
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=70.24 E-value=24 Score=31.14 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=42.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecC--CCCCCChhh--HHHHHHHHHHhCCCeEEEee
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDE--GISGYRDDS--LQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~--g~~~~~~~~--~~~v~~~~~~lgi~~~iv~~ 130 (357)
+....|++|||.-=..++..|.+.....+.. -++.++.+|+ |.....+++ ....+.++++++++...+..
T Consensus 32 ~~~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~i~~ 106 (266)
T 1fs5_A 32 DRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINL 106 (266)
T ss_dssp SSCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCGGGEEC
T ss_pred cCceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEEeCeeccCCCCCCHHHHHHHHHHHhhccCCCCHHHEEe
Confidence 3467899999987677777666532111112 2688999996 665433332 22345677778887655544
No 83
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=69.91 E-value=21 Score=30.92 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=41.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCC-eeEEEEEecC--CCCCCChhh--HHHHHHHHHHhCCCeEEEee
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYG-LDLFLLSIDE--GISGYRDDS--LQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g-~~v~av~id~--g~~~~~~~~--~~~v~~~~~~lgi~~~iv~~ 130 (357)
+...|++|||.-=..++..|.+.....+.. -++.++.+|. |.....+++ ....+.++++++++...+..
T Consensus 28 ~~~~i~lsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~lder~gv~~~~~~sn~~~~~~~l~~~~~~~~~~i~~ 101 (242)
T 2bkx_A 28 PDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSRHFI 101 (242)
T ss_dssp TTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHHHTGGGSCCCGGGEEC
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhhccCCChhheEEEeCccccCCCCCchHHHHHHHHHHHhccCCCCHHHEEc
Confidence 346799999977666776665431111112 2688899998 775433332 22355677778876554443
No 84
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=69.02 E-value=43 Score=30.13 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecC--CCCCCChhh-HHHHHH-HHHHhCCCeE
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDE--GISGYRDDS-LQTVKR-NEIQYGLPLK 126 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~--g~~~~~~~~-~~~v~~-~~~~lgi~~~ 126 (357)
+.+..|++|||.-=..+...|.+.-+..+..+ +++++++|+ |.....+++ ...+++ +....+++-.
T Consensus 53 ~~~~~l~LsgGsTP~~~y~~L~~~~~~~~idw~~v~~f~~DEr~gvp~~~~~Sn~~~~~~~Ll~~v~i~~~ 123 (289)
T 3hn6_A 53 ENPFILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKE 123 (289)
T ss_dssp TBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCGG
T ss_pred CCcEEEEECCCccHHHHHHHHHHhHhhcCCCchheEEEeCcceecCCCCcHHHHHHHHHHHhhccCCCCHH
Confidence 34689999999888778777776432222233 689999998 555444443 233333 4455666543
No 85
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=68.87 E-value=7.9 Score=29.44 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=28.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
.+|+++.++|.-|+.++.-+.+..+.. |+++.+-+++.+
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~--gi~~~i~a~~~~ 42 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKY--EVPVIIEAFPET 42 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHS--CCSEEEEEECSS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHC--CCCeEEEEecHH
Confidence 379999999999998888777766554 555555555444
No 86
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=68.13 E-value=4.8 Score=27.59 Aligned_cols=28 Identities=25% Similarity=0.586 Sum_probs=20.5
Q ss_pred cccccccCCCceeeccCCCccchHHHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFYEVFE 45 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~~ 45 (357)
..|..|+. +-.++..+ .+|+-||-+...
T Consensus 22 nRC~~~GR-~rg~iRkf---glcR~~FRe~A~ 49 (61)
T 2vqe_N 22 TRCVRCGR-ARSVYRFF---GLCRICLRELAH 49 (61)
T ss_dssp CCCTTTCC-CTTCCTTT---SSCHHHHHHHHH
T ss_pred eeeecCCC-CceeeccC---ceeHHHHHHHHh
Confidence 46999996 65566555 399999976543
No 87
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=67.16 E-value=26 Score=31.68 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=54.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHH
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDE 140 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~ 140 (357)
..||+|.+||+- +.|-.++...... .++.++.+|.-|+. +. +.++|+++|||++.++.... +-++
T Consensus 89 ~~ri~vl~Sg~g--~nl~~ll~~~~~g-~l~~~i~~Visn~p-----~~----~~~~A~~~gIp~~~~~~~~~---~r~~ 153 (288)
T 3obi_A 89 RRKVMLLVSQSD--HCLADILYRWRVG-DLHMIPTAIVSNHP-----RE----TFSGFDFGDIPFYHFPVNKD---TRRQ 153 (288)
T ss_dssp CEEEEEEECSCC--HHHHHHHHHHHTT-SSCEEEEEEEESSC-----GG----GSCCTTTTTCCEEECCCCTT---THHH
T ss_pred CcEEEEEEcCCC--CCHHHHHHHHHCC-CCCeEEEEEEcCCC-----hh----HHHHHHHcCCCEEEeCCCcc---cHHH
Confidence 357999999983 4555566554322 24568888776661 11 23568899999998765321 0011
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 141 IVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 141 ~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
. -..+.+..++.+.+.|++...+.
T Consensus 154 ~-----------------~~~~~~~l~~~~~Dlivlagy~~ 177 (288)
T 3obi_A 154 Q-----------------EAAITALIAQTHTDLVVLARYMQ 177 (288)
T ss_dssp H-----------------HHHHHHHHHHHTCCEEEESSCCS
T ss_pred H-----------------HHHHHHHHHhcCCCEEEhhhhhh
Confidence 1 12244555677999999887764
No 88
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=66.15 E-value=9.3 Score=32.36 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=28.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
.+|+|++|||....-...++..+.+. |.++.++.
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~---g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL---DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 48999999999998888888888654 78888774
No 89
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=65.94 E-value=63 Score=27.61 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=51.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+|.+||..+ .+..++..+.+. ....++.+|.-|..- ..+.+.|+++|||+.+++.... . +-+++.
T Consensus 3 rI~vl~SG~g~--~~~~~l~~l~~~-~~~~~i~~Vvs~~~~--------~~~~~~A~~~gIp~~~~~~~~~-~-~r~~~~ 69 (216)
T 2ywr_A 3 KIGVLVSGRGS--NLQAIIDAIESG-KVNASIELVISDNPK--------AYAIERCKKHNVECKVIQRKEF-P-SKKEFE 69 (216)
T ss_dssp EEEEEECSCCH--HHHHHHHHHHTT-SSCEEEEEEEESCTT--------CHHHHHHHHHTCCEEECCGGGS-S-SHHHHH
T ss_pred EEEEEEeCCcH--HHHHHHHHHHhC-CCCCeEEEEEeCCCC--------hHHHHHHHHcCCCEEEeCcccc-c-chhhhh
Confidence 79999999764 344444444322 123477777655321 1367889999999988654321 1 111111
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
..+.+..++.+.+.|++....
T Consensus 70 -----------------~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 70 -----------------ERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp -----------------HHHHHHHHHTTCCEEEESSCC
T ss_pred -----------------HHHHHHHHhcCCCEEEEeCch
Confidence 123344567899999887664
No 90
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=65.75 E-value=3.9 Score=27.53 Aligned_cols=28 Identities=32% Similarity=0.678 Sum_probs=20.3
Q ss_pred cccccccCCCceeeccCCCccchHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~cf~~~ 43 (357)
..|..|+. +--++.. -+..+|+.||-+.
T Consensus 19 ~rC~vcGr-~~g~iRk-fGL~~cR~cfRe~ 46 (56)
T 3iz6_N 19 RVCRVCGN-SHGLIRK-YGLMCCRQCFRSD 46 (56)
T ss_dssp CCCSSCCC-SCCCTTT-TSCTTHHHHHHTT
T ss_pred ceeecCCC-Ccccccc-cCCcHHHHHHHHH
Confidence 46999996 5555544 4777799999653
No 91
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=64.94 E-value=6.5 Score=33.70 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCCEEEEEecCChhHH-HHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 60 AGERIAIGASGGKDST-VLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~-~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
.+.+|+|++|||.-.. -.+.++..+.+. |++|+++.=+.+.
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~---g~eV~vv~T~~A~ 47 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVEL---GAKVTPFVTHTVQ 47 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHT---TCEEEEECSSCSC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhC---CCEEEEEEChhHH
Confidence 4679999999997766 677788877553 8898888655544
No 92
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=64.48 E-value=17 Score=27.49 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=39.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC-----CCC--------ChhhHHHHHHHHHHhCCCeEEE
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI-----SGY--------RDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~-----~~~--------~~~~~~~v~~~~~~lgi~~~iv 128 (357)
-+|+++.++|.-|+.++.-+++..+.. |+++.+-+++... ..+ -....+.+++.+..+++|+.++
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~--gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSK--NINATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHH--TCSEEEEEECSTTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEEC
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHC--CCCeEEEEecHHHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEE
Confidence 479999999999997777776654443 4443333333221 000 0122455666667778888777
Q ss_pred ee
Q 041164 129 SY 130 (357)
Q Consensus 129 ~~ 130 (357)
+.
T Consensus 83 ~~ 84 (109)
T 2l2q_A 83 NT 84 (109)
T ss_dssp CH
T ss_pred Ch
Confidence 64
No 93
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=64.09 E-value=63 Score=27.98 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=54.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
.||+|.+||..+ .+..++..+.+. ..++++.+|.-|..- ..+.++|+++|||+.+++..... +-+++
T Consensus 23 ~rI~~l~SG~g~--~~~~~l~~l~~~-~~~~~I~~Vvt~~~~--------~~~~~~A~~~gIp~~~~~~~~~~--~r~~~ 89 (229)
T 3auf_A 23 IRIGVLISGSGT--NLQAILDGCREG-RIPGRVAVVISDRAD--------AYGLERARRAGVDALHMDPAAYP--SRTAF 89 (229)
T ss_dssp EEEEEEESSCCH--HHHHHHHHHHTT-SSSEEEEEEEESSTT--------CHHHHHHHHTTCEEEECCGGGSS--SHHHH
T ss_pred cEEEEEEeCCcH--HHHHHHHHHHhC-CCCCeEEEEEcCCCc--------hHHHHHHHHcCCCEEEECccccc--chhhc
Confidence 379999999854 344555554332 135788777665321 13578899999999886543211 11111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
. ..+.+..++.+.+.|++....-
T Consensus 90 ~-----------------~~~~~~l~~~~~Dliv~agy~~ 112 (229)
T 3auf_A 90 D-----------------AALAERLQAYGVDLVCLAGYMR 112 (229)
T ss_dssp H-----------------HHHHHHHHHTTCSEEEESSCCS
T ss_pred c-----------------HHHHHHHHhcCCCEEEEcChhH
Confidence 1 1233455678999999877653
No 94
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=63.68 E-value=8.7 Score=32.16 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=31.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
.+|+|++|||.-..-.+.+++.+.+. |.+|+++.=+.+.
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~~---g~~V~vv~T~~A~ 44 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKSK---FDEVNVIASTNGR 44 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTTT---CSEEEEEECTGGG
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHHC---CCEEEEEECcCHH
Confidence 68999999999999888888888653 7898888655443
No 95
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=63.68 E-value=35 Score=29.40 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=53.1
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHH
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMD 139 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~ 139 (357)
+..||+|.+||+-. .+..++...... .++.++.+|.-|..-. ...+.|+++|||+++++.... . +
T Consensus 7 ~~~ri~vl~SG~gs--nl~all~~~~~~-~~~~~I~~Vis~~~~a--------~~l~~A~~~gIp~~~~~~~~~-~---~ 71 (215)
T 3kcq_A 7 KELRVGVLISGRGS--NLEALAKAFSTE-ESSVVISCVISNNAEA--------RGLLIAQSYGIPTFVVKRKPL-D---I 71 (215)
T ss_dssp CCEEEEEEESSCCH--HHHHHHHHTCCC--CSEEEEEEEESCTTC--------THHHHHHHTTCCEEECCBTTB-C---H
T ss_pred CCCEEEEEEECCcH--HHHHHHHHHHcC-CCCcEEEEEEeCCcch--------HHHHHHHHcCCCEEEeCcccC-C---h
Confidence 34589999999743 344444444221 1357888887764321 125679999999998754321 0 0
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 140 EIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 140 ~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
..+.+..++.+.+.|++.....
T Consensus 72 --------------------~~~~~~L~~~~~Dlivlagy~~ 93 (215)
T 3kcq_A 72 --------------------EHISTVLREHDVDLVCLAGFMS 93 (215)
T ss_dssp --------------------HHHHHHHHHTTCSEEEESSCCS
T ss_pred --------------------HHHHHHHHHhCCCEEEEeCCce
Confidence 1233455678999999877654
No 96
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=63.47 E-value=31 Score=31.09 Aligned_cols=107 Identities=8% Similarity=0.049 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCC------CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHH
Q 041164 43 VFEEEIHQVIVGNQL------FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKR 116 (357)
Q Consensus 43 ~~~~kv~~~i~k~~l------~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~ 116 (357)
.++..|...-.++.| .....||+|.+||+- +.|-.++...... .++.++.+|.-|+.- . +.+
T Consensus 64 ~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g--~nl~~ll~~~~~g-~l~~~i~~Visn~~~-----a----~~~ 131 (287)
T 3nrb_A 64 DFNSAFGKVVEKYNAEWWFRPRTDRKKVVIMVSKFD--HCLGDLLYRHRLG-ELDMEVVGIISNHPR-----E----ALS 131 (287)
T ss_dssp HHHHHHHHHHGGGTCEEEEEETTCCCEEEEEECSCC--HHHHHHHHHHHHT-SSCCEEEEEEESSCG-----G----GCC
T ss_pred HHHHHHHHHHHHcCCeeEeeccCCCcEEEEEEeCCC--cCHHHHHHHHHCC-CCCeEEEEEEeCChH-----H----HHH
Confidence 455555444444443 123458999999983 4555666654332 245788888777642 1 455
Q ss_pred HHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 117 NEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 117 ~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
+|+++|||++.++..... -++. -..+.+..++.+.+.|++...+.
T Consensus 132 ~A~~~gIp~~~~~~~~~~---r~~~-----------------~~~~~~~l~~~~~Dlivlagym~ 176 (287)
T 3nrb_A 132 VSLVGDIPFHYLPVTPAT---KAAQ-----------------ESQIKNIVTQSQADLIVLARYMQ 176 (287)
T ss_dssp CCCCTTSCEEECCCCGGG---HHHH-----------------HHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHcCCCEEEEeccCcc---hhhH-----------------HHHHHHHHHHhCCCEEEhhhhhh
Confidence 688999999987653210 0111 12244555677999999987764
No 97
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=62.51 E-value=6.5 Score=33.84 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=30.3
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 60 AGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
.+.+|+|++|||....-...++..+.+. .|++|.++.=+.
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~~--~g~~V~vv~T~~ 57 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDI--PGLEVAVVTTER 57 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC-----CEEEEEEECTG
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhcc--cCCEEEEEECHh
Confidence 4568999999999998888888888541 278888885443
No 98
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=62.37 E-value=5.2 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=19.3
Q ss_pred ccccccccccccccccchhhH
Q 041164 290 EQGTCERCGYISSQKWCKACV 310 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~ 310 (357)
....|+.||..+..++|..|.
T Consensus 67 ~i~~C~~C~nlte~~~C~IC~ 87 (212)
T 3vdp_A 67 KLRYCKICFNITDKEVCDICS 87 (212)
T ss_dssp HCEECTTTCCEESSSSCHHHH
T ss_pred hCCcCCCCCCCCCCCcCCCCC
Confidence 467899999999999999998
No 99
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=61.68 E-value=61 Score=29.57 Aligned_cols=80 Identities=23% Similarity=0.182 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCCCC-CChhh-HHHHHHHHHH
Q 041164 44 FEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGISG-YRDDS-LQTVKRNEIQ 120 (357)
Q Consensus 44 ~~~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~~~-~~~~~-~~~v~~~~~~ 120 (357)
.-+.+.+.|.+...+..+.++.|++|||..=..+...|.... ..+..+ ++.++++|+-... ..+++ ...++.+...
T Consensus 42 aA~~i~~~I~~~~~~~~~~~~~l~LsgGsTP~~ly~~L~~~~-~~~idw~~V~~f~~DEr~vp~d~~~Sn~~~~~~l~~~ 120 (312)
T 3e15_A 42 SAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVK-DIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFES 120 (312)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEECCSHHHHHHHHHHTTCC-SSCCCGGGCEEEESEEECCTTCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhCCCEEEEEeCCCCHHHHHHHHHHhh-ccCCCccceEEEEeeeecCCCCChHHHHHHHHHHHhc
Confidence 334444444443334556688999999977666666665321 112233 5889999964321 12222 3345677888
Q ss_pred hCCC
Q 041164 121 YGLP 124 (357)
Q Consensus 121 lgi~ 124 (357)
++++
T Consensus 121 v~i~ 124 (312)
T 3e15_A 121 LKIN 124 (312)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8886
No 100
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=61.30 E-value=7.1 Score=32.87 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=31.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
.+|+|++|||....-...++..+.+. |.+|.++.=+.+.
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~~---g~~V~vv~T~~A~ 41 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQH---FDEVNILFSPSSK 41 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTTT---SSCEEEEECGGGG
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC---CCEEEEEEchhHH
Confidence 47999999999999999999988543 7888888655443
No 101
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=60.99 E-value=6.8 Score=33.40 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
+.+|+|++|||.-..-...++..+.+. |.+|.++.
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~~---g~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKSF---FKEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTTT---SSEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 568999999999999888888888542 78888874
No 102
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=60.57 E-value=10 Score=32.74 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~ 101 (357)
+.+|+|++|||....-.+.++..+.+. + +|.++.=+.
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~~---g-~V~vv~T~~ 55 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTEW---A-EVRAVVTKS 55 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHTT---S-EEEEEECTG
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhcC---C-CEEEEEcch
Confidence 568999999999988888888888653 6 888775443
No 103
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=59.96 E-value=9.1 Score=32.95 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=27.5
Q ss_pred CCCEEEEEecCChhHHH-HHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 60 AGERIAIGASGGKDSTV-LAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS~~-LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
.+.+|+|++|||.-..- .+.++..+.+. |.+|.++.=..+
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~---g~eV~vv~T~~A 44 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAE---GAEVRPVVSYTV 44 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHHT---TCEEEEEECC--
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHhC---CCEEEEEEehHH
Confidence 45799999999974332 56777777553 889888765444
No 104
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=59.33 E-value=92 Score=30.52 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChh-HHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHH--hC
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKD-STVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQ--YG 122 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~D-S~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~--lg 122 (357)
.++...+.+++..-.|.+|+|. |+.| ...|+.+|.++ |.+++.+...++ +++..+.+++..+. +|
T Consensus 349 ~r~~~~l~d~~~~l~GKrvaI~--gd~~~~~~la~fL~el------Gm~vv~v~~~~~----~~~~~~~~~~~l~~~~~~ 416 (523)
T 3u7q_B 349 GRLVDMMTDSHTWLHGKRFALW--GDPDFVMGLVKFLLEL------GCEPVHILCHNG----NKRWKKAVDAILAASPYG 416 (523)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE--CSHHHHHHHHHHHHHT------TCEEEEEEETTC----CHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEE--CCchHHHHHHHHHHHc------CCEEEEEEeCCC----CHHHHHHHHHHHhhccCC
Confidence 3444455554333457888776 6655 44455566554 999888876543 34445556666664 33
Q ss_pred CCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHH
Q 041164 123 LPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAE 185 (357)
Q Consensus 123 i~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~ae 185 (357)
....++.-.+ ..+ +.+.+++.+.+.|+.+.+...++.
T Consensus 417 ~~~~v~~~~D-----~~~---------------------l~~~i~~~~pDLlig~s~~k~~a~ 453 (523)
T 3u7q_B 417 KNATVYIGKD-----LWH---------------------LRSLVFTDKPDFMIGNSYGKFIQR 453 (523)
T ss_dssp TTCEEEESCC-----HHH---------------------HHHHHHHTCCSEEEECTTHHHHHH
T ss_pred CCcEEEECCC-----HHH---------------------HHHHHHhcCCCEEEECccHHHHHH
Confidence 3334442211 122 334556678888888877665443
No 105
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=57.74 E-value=89 Score=26.63 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=53.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHH
Q 041164 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 141 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~ 141 (357)
.||+|.+||+-. .+..++...... .++.++.+|.-|..-. ...+.|+++|||+++++.... . +-+++
T Consensus 8 ~ri~vl~SG~gs--nl~all~~~~~~-~l~~~I~~Visn~~~a--------~~l~~A~~~gIp~~~~~~~~~-~-~r~~~ 74 (209)
T 4ds3_A 8 NRVVIFISGGGS--NMEALIRAAQAP-GFPAEIVAVFSDKAEA--------GGLAKAEAAGIATQVFKRKDF-A-SKEAH 74 (209)
T ss_dssp EEEEEEESSCCH--HHHHHHHHHTST-TCSEEEEEEEESCTTC--------THHHHHHHTTCCEEECCGGGS-S-SHHHH
T ss_pred ccEEEEEECCcH--HHHHHHHHHHcC-CCCcEEEEEEECCccc--------HHHHHHHHcCCCEEEeCcccc-C-CHHHH
Confidence 379999999843 344445544221 1357888887764321 124689999999998765321 1 11111
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 142 VKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 142 ~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
-..+.+..++.+.+.|++.....
T Consensus 75 -----------------d~~~~~~l~~~~~Dliv~agy~~ 97 (209)
T 4ds3_A 75 -----------------EDAILAALDVLKPDIICLAGYMR 97 (209)
T ss_dssp -----------------HHHHHHHHHHHCCSEEEESSCCS
T ss_pred -----------------HHHHHHHHHhcCCCEEEEecccc
Confidence 12244555677999999877653
No 106
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=57.14 E-value=14 Score=26.84 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY 106 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~ 106 (357)
+.+ ++|+|-..+|.-|..++.+|.++ |++ +..++-|+.++
T Consensus 51 l~~-~~ivvyC~~g~rs~~a~~~L~~~------G~~--v~~l~GG~~~W 90 (94)
T 1wv9_A 51 LPR-RPLLLVCEKGLLSQVAALYLEAE------GYE--AMSLEGGLQAL 90 (94)
T ss_dssp CCS-SCEEEECSSSHHHHHHHHHHHHH------TCC--EEEETTGGGCC
T ss_pred CCC-CCEEEEcCCCChHHHHHHHHHHc------CCc--EEEEcccHHHH
Confidence 455 77888888899999999999887 888 56678887554
No 107
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=56.10 E-value=6.9 Score=34.11 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=19.4
Q ss_pred ccccccccccccccccchhhH
Q 041164 290 EQGTCERCGYISSQKWCKACV 310 (357)
Q Consensus 290 ~~~~C~~Cg~p~~~~~c~~c~ 310 (357)
....|+.||..|..++|..|.
T Consensus 53 ~i~~C~~C~nlte~~~C~IC~ 73 (228)
T 1vdd_A 53 DLHVCPICFNITDAEKCDVCA 73 (228)
T ss_dssp HCEECSSSCCEESSSSCHHHH
T ss_pred cCeEcCCCCCCcCCCcCCCCC
Confidence 467899999999999999997
No 108
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=55.23 E-value=5.8 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=21.5
Q ss_pred cCCcccccccCCCceeeccCCCccchHHH
Q 041164 11 AGGRLCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 11 ~~~~~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
...+.|..|+. ..++.-...+...|..|
T Consensus 9 l~~~~Cp~C~~-~~lv~D~~~ge~vC~~C 36 (58)
T 1dl6_A 9 LPRVTCPNHPD-AILVEDYRAGDMICPEC 36 (58)
T ss_dssp CSCCSBTTBSS-SCCEECSSSCCEECTTT
T ss_pred cccccCcCCCC-CceeEeCCCCeEEeCCC
Confidence 33457999996 45666667799999998
No 109
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=55.22 E-value=9.2 Score=26.02 Aligned_cols=32 Identities=22% Similarity=0.632 Sum_probs=20.0
Q ss_pred cccccccCCCceeeccCC---CccchHHHHHHHHH
Q 041164 14 RLCSTCNQRKAALKRPKT---LEQICRECFYEVFE 45 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~---~~~lC~~cf~~~~~ 45 (357)
+.|.+|+..|-.-.+... -...|+.||.+.+.
T Consensus 23 rpcvkckvaprdwkvknkhlriynmcktcfnnsid 57 (81)
T 2p09_A 23 RPCVKCKVAPRDWKVKNKHLRIYNMCKTCFNNSID 57 (81)
T ss_dssp SCCTTTSSSCCCEEEETTEEEEESSCHHHHHHHHH
T ss_pred ccceeeeecCccceeccceeeHHHHHHHHhcCcee
Confidence 369999864433333221 13579999987753
No 110
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=53.15 E-value=63 Score=28.85 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=41.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEec--CCCCCCChhh--HHHHHHHHHHhCCCeEEEee
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSID--EGISGYRDDS--LQTVKRNEIQYGLPLKIVSY 130 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id--~g~~~~~~~~--~~~v~~~~~~lgi~~~iv~~ 130 (357)
+....|++|||.-=..+...|.+.....+..+ ++.++.+| .|.....+++ ....+.+.+.++++...+..
T Consensus 32 ~~~~~lglsgGsTp~~~~~~L~~~~~~~~i~~~~v~v~~lDEr~gv~~~~~~Sn~~~~~~~l~~~~~~~~~~i~~ 106 (289)
T 1ne7_A 32 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHI 106 (289)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTTSTTSHHHHHHHHTGGGSCCCGGGEEC
T ss_pred CCCEEEEEcCCccHHHHHHHHHhhhhccCCCchheEEEeCceeecCCCCcHHHHHHHHHHHhhccCCCCHHHEec
Confidence 34488999999876667666664322111222 68899999 5554333332 22345567777876554443
No 111
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=51.65 E-value=11 Score=23.80 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=18.5
Q ss_pred ccccCCCceeeccCCCccchHHHHHH
Q 041164 17 STCNQRKAALKRPKTLEQICRECFYE 42 (357)
Q Consensus 17 ~~C~~~~a~~~~~~~~~~lC~~cf~~ 42 (357)
.+|....-..+...+..++|.+||..
T Consensus 12 vkCeTPnCpF~mSVnTQP~CHEC~er 37 (49)
T 2eqg_A 12 VKCETPNCPFFMSVNTQPLCHECSER 37 (49)
T ss_dssp SBCSSTTCCSBCCTTTTTSCHHHHHH
T ss_pred EeecCCCCCeEEEecCccchHHHHHH
Confidence 34665445566667889999999963
No 112
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=51.18 E-value=1.1e+02 Score=26.02 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=52.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+|.+||+--++-.| +...... ..++++.+|.-|..- ....+.|+++|||+.+++..... +-+++.
T Consensus 2 riaVl~SG~Gs~L~aL--i~~~~~~-~~~~~I~~Vvs~~~~--------~~~~~~A~~~gIp~~~~~~~~~~--~r~~~~ 68 (209)
T 1meo_A 2 RVAVLISGTGSNLQAL--IDSTREP-NSSAQIDIVISNKAA--------VAGLDKAERAGIPTRVINHKLYK--NRVEFD 68 (209)
T ss_dssp EEEEEESSSCTTHHHH--HHHHHST-TCSCEEEEEEESSTT--------CHHHHHHHHTTCCEEECCGGGSS--SHHHHH
T ss_pred eEEEEEECCchHHHHH--HHHHhcC-CCCcEEEEEEeCCCC--------hHHHHHHHHcCCCEEEECccccC--chhhhh
Confidence 7999999988654433 3332211 236788888765421 12467899999999887653211 111111
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCCh
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~ 180 (357)
..+.+..++.+.+.|++....
T Consensus 69 -----------------~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 69 -----------------SAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp -----------------HHHHHHHHHTTCCEEEEESCC
T ss_pred -----------------HHHHHHHHhcCCCEEEEcchh
Confidence 113345567789998876654
No 113
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.74 E-value=8.5 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.541 Sum_probs=19.7
Q ss_pred ccccccCCC-ceeeccCCCccchHHHHHHHHH
Q 041164 15 LCSTCNQRK-AALKRPKTLEQICRECFYEVFE 45 (357)
Q Consensus 15 ~C~~C~~~~-a~~~~~~~~~~lC~~cf~~~~~ 45 (357)
+|..|+..- ......+++..||+.||.+.+.
T Consensus 35 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 35 VCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp BCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 577787531 1112345788999999976553
No 114
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.57 E-value=7.1 Score=26.77 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=19.0
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..-. ......++..||+.||.+.+
T Consensus 33 ~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 33 RCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp BCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred EeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 5778875311 11223578999999997654
No 115
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=48.35 E-value=89 Score=24.03 Aligned_cols=66 Identities=8% Similarity=-0.017 Sum_probs=41.0
Q ss_pred CCEEEEEecCC--hhHHH-HHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGG--KDSTV-LAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG--~DS~~-LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
|+.++|-|.+. ..+.. ++..+.++.++++ .++.++.|.+|.+- ..+++.+.++++++++++++.++
T Consensus 30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 99 (160)
T 3lor_A 30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEH--HDVMTPEALKVFIDEFGIKFPVA 99 (160)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC--GGGSCHHHHHHHHHHTTCCSCEE
T ss_pred CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccc--cccCCHHHHHHHHHHcCCCCcEE
Confidence 45677777655 33333 3455666655554 35777777776322 22345677889999999887654
No 116
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=46.99 E-value=26 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=27.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEE
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~ 98 (357)
+|+|++|||.-..-...++..+.+. .|.+|+++.
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~--~g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREM--PNVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTC--TTCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhc--cCCEEEEEE
Confidence 7999999999998888888888542 268888774
No 117
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=46.43 E-value=8.5 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=17.4
Q ss_pred ccccccCCCc---eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA---ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a---~~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|+..-. .-...+++..||+.||.+.
T Consensus 90 ~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 90 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121 (123)
T ss_dssp BCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHH
T ss_pred CcCcCCCcccccCCceEEECCEEeCHHHhhhh
Confidence 4666664321 1233456788999998654
No 118
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=45.05 E-value=15 Score=23.23 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=14.2
Q ss_pred eeccCCCccchHHHHHHHH
Q 041164 26 LKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 26 ~~~~~~~~~lC~~cf~~~~ 44 (357)
+.=...+..||--||+++-
T Consensus 25 fFGTpen~GFCTlCf~eyr 43 (48)
T 2eqe_A 25 YFGTPENKGFCTLCFIEYS 43 (48)
T ss_dssp SBCCTTTTTCCHHHHHHHH
T ss_pred cccCcccCceeeeehhhhh
Confidence 3334468899999999874
No 119
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.59 E-value=13 Score=25.28 Aligned_cols=30 Identities=17% Similarity=0.506 Sum_probs=19.0
Q ss_pred ccccccCCC-ceeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRK-AALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~-a~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..- ..-....++..||+.||.+.+
T Consensus 33 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 33 VCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp BCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred EECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 578887531 111223578899999996554
No 120
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=42.72 E-value=60 Score=27.70 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=53.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHH
Q 041164 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 63 kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~ 142 (357)
||+|.+||+-. .|-.++...... .+++++.+|.-|..- ..+.+.|+++|||+..++..... +-+++.
T Consensus 2 ri~vl~Sg~gs--nl~ali~~~~~~-~~~~~i~~Vis~~~~--------~~~~~~A~~~gIp~~~~~~~~~~--~r~~~~ 68 (212)
T 1jkx_A 2 NIVVLISGNGS--NLQAIIDACKTN-KIKGTVRAVFSNKAD--------AFGLERARQAGIATHTLIASAFD--SREAYD 68 (212)
T ss_dssp EEEEEESSCCH--HHHHHHHHHHTT-SSSSEEEEEEESCTT--------CHHHHHHHHTTCEEEECCGGGCS--SHHHHH
T ss_pred EEEEEEECCcH--HHHHHHHHHHcC-CCCceEEEEEeCCCc--------hHHHHHHHHcCCcEEEeCccccc--chhhcc
Confidence 78999999773 344444443322 235788877665421 13578899999999886543211 111111
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
..+.+..++.+.+.|++.....
T Consensus 69 -----------------~~~~~~l~~~~~Dliv~agy~~ 90 (212)
T 1jkx_A 69 -----------------RELIHEIDMYAPDVVVLAGFMR 90 (212)
T ss_dssp -----------------HHHHHHHGGGCCSEEEESSCCS
T ss_pred -----------------HHHHHHHHhcCCCEEEEeChhh
Confidence 1233455677999998876653
No 121
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=42.45 E-value=21 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++++|+|-..+|..|..++.+|.+. |+ .+..++-|+
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~------G~--~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQN------GV--NAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTT------TC--EEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHC------CC--CEEEecccH
Confidence 456778888889999999999988876 88 455667665
No 122
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.89 E-value=11 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=17.1
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..-. .-....++..||+.||.+.+
T Consensus 53 ~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 53 NCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp BCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred ccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 4566654211 11223568899999987543
No 123
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=41.49 E-value=24 Score=26.37 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY 106 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~ 106 (357)
+.++++|+|-..+|..|..++.+|.++ |++- ..++-|+.++
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~------G~~~--~~l~GG~~~W 93 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHEL------GYTP--YYLEGNVYDF 93 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHT------TCCC--EEEESCGGGT
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHC------CCCE--EEecCCHHHH
Confidence 345677888888899999999998886 7764 5677777543
No 124
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.98 E-value=6.8 Score=27.96 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=10.1
Q ss_pred CCCccchHHHHHHH
Q 041164 30 KTLEQICRECFYEV 43 (357)
Q Consensus 30 ~~~~~lC~~cf~~~ 43 (357)
+++..||+.||.+.
T Consensus 59 ~~g~~yC~~~y~~~ 72 (80)
T 2dj7_A 59 KDGVPYCESDYHAQ 72 (80)
T ss_dssp ETTEEECTTHHHHH
T ss_pred ECCEEECHHHHHHH
Confidence 45778888888654
No 125
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=40.84 E-value=19 Score=25.39 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=24.2
Q ss_pred cCCcccccccCCCceeecc--CCCccchHHHHHHHHHH
Q 041164 11 AGGRLCSTCNQRKAALKRP--KTLEQICRECFYEVFEE 46 (357)
Q Consensus 11 ~~~~~C~~C~~~~a~~~~~--~~~~~lC~~cf~~~~~~ 46 (357)
.....|..|+......-++ ...-.||..|.+.+-.+
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~ 43 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKY 43 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHh
Confidence 3456799999866666655 34448999998866443
No 126
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=40.41 E-value=11 Score=28.98 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=28.0
Q ss_pred CCC-CEEEEEe-cCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 59 KAG-ERIAIGA-SGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 59 ~~~-~kvlVa~-SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
.++ .+|+|-. .||..|..++.+|..+ |++ +..++-|+
T Consensus 86 ~~~~~~ivvyC~~~G~rs~~a~~~L~~~------G~~--v~~l~GG~ 124 (134)
T 3g5j_A 86 ALNYDNIVIYCARGGMRSGSIVNLLSSL------GVN--VYQLEGGY 124 (134)
T ss_dssp HTTCSEEEEECSSSSHHHHHHHHHHHHT------TCC--CEEETTHH
T ss_pred ccCCCeEEEEECCCChHHHHHHHHHHHc------CCc--eEEEeCcH
Confidence 345 6788777 5899999999999886 884 45567665
No 127
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=40.31 E-value=23 Score=25.98 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=29.3
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++++|+|-..+|..|..++.+|.++ |++ +..++-|+
T Consensus 53 l~~~~~iv~yC~~g~rs~~a~~~L~~~------G~~--v~~l~GG~ 90 (103)
T 3eme_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEAN------GID--AVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTT------TCE--EEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHC------CCC--eEEeCCCH
Confidence 456678888888899999999988876 884 45666665
No 128
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=39.82 E-value=90 Score=24.00 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=39.6
Q ss_pred EEEEEecCChhH----HHHHHHHHHHhhhCCCCeeE-EEEEecCCCC----C---CC--hhhHHHHHHHHHHhCCCeEEE
Q 041164 63 RIAIGASGGKDS----TVLAFVLSELNRRHNYGLDL-FLLSIDEGIS----G---YR--DDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 63 kvlVa~SGG~DS----~~LL~ll~~~~~~~~~g~~v-~av~id~g~~----~---~~--~~~~~~v~~~~~~lgi~~~iv 128 (357)
++++.+++|+.+ ...+.++..+... |.+| .+++++.|.. + .. ..-.+..+.+++.+|+++++-
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~---g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC 78 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEK---GHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVC 78 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHT---TCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhc---CCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEe
Confidence 678888988773 3444455544332 7789 7888876652 1 11 122344667778889988776
Q ss_pred e
Q 041164 129 S 129 (357)
Q Consensus 129 ~ 129 (357)
.
T Consensus 79 ~ 79 (130)
T 2hy5_A 79 V 79 (130)
T ss_dssp H
T ss_pred H
Confidence 4
No 129
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=39.34 E-value=2e+02 Score=25.27 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=42.4
Q ss_pred CCEEEEEecCChhHH-HHHHHHHHHhhhCCCCeeEEEEEec-CCCCCCChhh---HHHHHHHHHHhCCC--eEEEee
Q 041164 61 GERIAIGASGGKDST-VLAFVLSELNRRHNYGLDLFLLSID-EGISGYRDDS---LQTVKRNEIQYGLP--LKIVSY 130 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~-~LL~ll~~~~~~~~~g~~v~av~id-~g~~~~~~~~---~~~v~~~~~~lgi~--~~iv~~ 130 (357)
|-.++-.+||+.|.. -++.++.+. +..++++|.| .|.....++. .+...+.+.+.||+ -.++|-
T Consensus 91 Ga~iINdvs~~~d~~~~~~~~~a~~------~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDP 161 (262)
T 1f6y_A 91 NRAMINSTNAEREKVEKLFPLAVEH------GAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDP 161 (262)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEEC
T ss_pred CCCEEEECCCCcccHHHHHHHHHHh------CCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeC
Confidence 667888999998765 677777775 8899999986 4543211222 23344457789997 455553
No 130
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=38.53 E-value=91 Score=24.19 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=25.7
Q ss_pred CEEE-EEecC--ChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC
Q 041164 62 ERIA-IGASG--GKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104 (357)
Q Consensus 62 ~kvl-Va~SG--G~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~ 104 (357)
+|++ |..|| |.|....+..+...... .|.+|.+++.+.|..
T Consensus 16 ~kl~ii~~sgP~~~~~~~~al~lA~~A~a--~g~eV~vFf~~dGV~ 59 (134)
T 3mc3_A 16 XXILIVVTHGPEDLDRTYAPLFMASISAS--MEYETSVFFMIXGPX 59 (134)
T ss_dssp CEEEEEECCCGGGTHHHHHHHHHHHHHHH--TTCEEEEEECTTGGG
T ss_pred ceEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEEeCcHH
Confidence 4554 55555 56666666655543222 288999888888874
No 131
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.52 E-value=10 Score=25.58 Aligned_cols=29 Identities=10% Similarity=0.354 Sum_probs=18.5
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~ 43 (357)
.|..|+..-. ......++..||+.||.+.
T Consensus 33 ~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 33 VCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp BCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred EECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 5888875311 1122357889999999654
No 132
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=38.09 E-value=1.3e+02 Score=22.94 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=40.6
Q ss_pred CCEEEEEecCC--hhHHHH-HHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGG--KDSTVL-AFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG--~DS~~L-L~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
|+.++|-|.+. ..+... +-.|.++.++++ .++.++.|++|..- ...++.+.++++++++|+++.++
T Consensus 28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (158)
T 3eyt_A 28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEH--HEAMTPISLKAFLHEYRIKFPVG 97 (158)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSC--GGGSCHHHHHHHHHHTTCCSCEE
T ss_pred CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccc--cccCCHHHHHHHHHHcCCCceEE
Confidence 55677766554 334442 556666666554 46777777776321 12345677889999999887654
No 133
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=37.97 E-value=11 Score=25.71 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=17.5
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~ 43 (357)
.|..|+..-. ......++..+|+.||...
T Consensus 41 ~C~~C~~~L~~~~~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 41 VCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (72)
T ss_dssp SCTTTCCCCGGGCCEEETTEEECHHHHHHH
T ss_pred cccCCCCCCCCCCeEeECCeEeCHHHHHHh
Confidence 4777775311 1122356888999998653
No 134
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.71 E-value=12 Score=26.41 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=16.1
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..-. .-....++..||+.||.+.+
T Consensus 43 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 43 VCTDCGTNLKQKGHFFVEDQIYCEKHARERV 73 (79)
T ss_dssp SCSSSCCCHHHHCCEESSSCEECHHHHHHHH
T ss_pred eeCCCCCCCCCCCeEeECCEEECHHHHHHHh
Confidence 4666664211 01123467788888886543
No 135
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.51 E-value=14 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.571 Sum_probs=18.2
Q ss_pred ccccccCCC-ceeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRK-AALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~-a~~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|+..- .......++..||+.||.+.
T Consensus 33 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 33 VCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp BCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred ccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 578887531 11122357889999999654
No 136
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=37.31 E-value=1.9e+02 Score=24.46 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=37.2
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecC--CCCCCChhh--HHHHHHHHHHhCCCeEEE
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE--GISGYRDDS--LQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~--g~~~~~~~~--~~~v~~~~~~lgi~~~iv 128 (357)
.|++|||.-=..++..|... ..+ --++.++.+|+ |.....+++ ....+.++++++++...+
T Consensus 31 ~i~ls~G~T~~~~~~~L~~~--~~~-~~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~~ 95 (234)
T 2ri0_A 31 TLGLATGSTPLELYKEIRES--HLD-FSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYL 95 (234)
T ss_dssp EEEECCSSTTHHHHHHHHTS--CCC-CTTCEEEESEEETTCCTTSTTSHHHHHHHHTTTTSCCSEEEC
T ss_pred EEEEcCCCCHHHHHHHHHhc--CCC-hhheEEEeCeeecCCCCCChHHHHHHHHHHHhccCCCcHhhc
Confidence 79999998766666666531 111 12678888884 564332322 223456677788887733
No 137
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=36.51 E-value=34 Score=23.63 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=23.2
Q ss_pred CcccccccCCCceeec-cCCCccchHHHHHHHHHH
Q 041164 13 GRLCSTCNQRKAALKR-PKTLEQICRECFYEVFEE 46 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~-~~~~~~lC~~cf~~~~~~ 46 (357)
...|..|+......-+ -.+|..||..|.+.+-.+
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~ 43 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 43 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHc
Confidence 4579999975444332 245778999999866443
No 138
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=36.22 E-value=1.5e+02 Score=22.94 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=43.3
Q ss_pred CCCEEEEEecCC--hhHHHHHHHHHHHhhhCCCCeeEEEEEecC-------C---CCCCChhhHHHHHHHHHHhCC-CeE
Q 041164 60 AGERIAIGASGG--KDSTVLAFVLSELNRRHNYGLDLFLLSIDE-------G---ISGYRDDSLQTVKRNEIQYGL-PLK 126 (357)
Q Consensus 60 ~~~kvlVa~SGG--~DS~~LL~ll~~~~~~~~~g~~v~av~id~-------g---~~~~~~~~~~~v~~~~~~lgi-~~~ 126 (357)
.++.++|-|.+. ..+...+-.+.++.++++ ++.++.|.+|. | .......+.+.++++.+++|+ ++.
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI 114 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence 355677766654 456666677777777765 77777777762 0 011122446778899999998 665
Q ss_pred EE
Q 041164 127 IV 128 (357)
Q Consensus 127 iv 128 (357)
++
T Consensus 115 ~~ 116 (165)
T 3ha9_A 115 MV 116 (165)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 139
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=36.03 E-value=35 Score=25.35 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++.+|+|-..+|..|..++.+|.++ |+ .+..++-|+
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~------G~--~v~~l~GG~ 89 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQL------GL--NIVDVEGGI 89 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTT------TC--CEEEETTHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHc------CC--CEEEEcCcH
Confidence 456677888888999999998888876 88 455566665
No 140
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=35.99 E-value=2e+02 Score=27.40 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChh-HHHHHHHHHHHhhhCCCCeeEEEEEecCC
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKD-STVLAFVLSELNRRHNYGLDLFLLSIDEG 102 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~D-S~~LL~ll~~~~~~~~~g~~v~av~id~g 102 (357)
++...+.+++..-.|.||+| -||.| ...++.+|.++ |.+++.+.....
T Consensus 299 r~~~~~~d~~~~l~Gkrv~i--~~~~~~~~~l~~~L~el------Gm~vv~~~~~~~ 347 (458)
T 3pdi_B 299 QLQDAMLDTHFMLSSARTAI--AADPDLLLGFDALLRSM------GAHTVAAVVPAR 347 (458)
T ss_dssp HHHHHHHHHHHHHTTCEEEE--ECCHHHHHHHHHHHHTT------TCEEEEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEE--ECCcHHHHHHHHHHHHC------CCEEEEEEECCC
Confidence 34444544433335788877 34443 22344455444 999988877554
No 141
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=35.30 E-value=1.1e+02 Score=23.35 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=30.3
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCC
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~ 104 (357)
.++.+|+|-...|.-|..++.+|.++ ||+ .+.++.-|+.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~------G~~-~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALN------GFK-SAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHH------TCS-EEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHc------CCc-ceEEecCCcc
Confidence 45678888888888999999999887 775 3456778874
No 142
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.30 E-value=15 Score=25.15 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=18.0
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~ 43 (357)
.|..|+..-. ......++..||+.||.+.
T Consensus 35 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 35 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp CCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred cccccCCccCCCccCccCCeEECHHHHhHH
Confidence 5777875311 1122356889999999654
No 143
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=34.81 E-value=38 Score=23.20 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=24.6
Q ss_pred CcccccccCCCceeecc-CCCccchHHHHHHHHHHHH
Q 041164 13 GRLCSTCNQRKAALKRP-KTLEQICRECFYEVFEEEI 48 (357)
Q Consensus 13 ~~~C~~C~~~~a~~~~~-~~~~~lC~~cf~~~~~~kv 48 (357)
+..|..|+......-++ -.|..||..|.+.+-.+..
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 45799999754433332 3467899999987766543
No 144
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.33 E-value=15 Score=25.03 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=18.0
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~ 43 (357)
.|..|+..-. .-....++..||+.||...
T Consensus 35 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 35 LCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp BCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred eECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 5777875311 1122347889999999654
No 145
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.30 E-value=19 Score=27.15 Aligned_cols=39 Identities=21% Similarity=0.514 Sum_probs=29.7
Q ss_pred ccccccccc-cccc--cccchhhHHHHHhhcCCCCc-ceeccc
Q 041164 290 EQGTCERCG-YISS--QKWCKACVLLEGLNRGLPKM-GIVRSR 328 (357)
Q Consensus 290 ~~~~C~~Cg-~p~~--~~~c~~c~~~~~~~~~~~~~-~~~~~~ 328 (357)
...+|.+|| .|.. .=.|..|..+++-+.+-|++ ||.+++
T Consensus 56 ~~~rCIiCg~~~g~~dAYYC~eC~~lEKDRDGCPriiN~Gs~k 98 (109)
T 2k0a_A 56 QAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNR 98 (109)
T ss_dssp TTSBCTTTSSSBCCEECEECHHHHHHTSTTSCCCCBCSCSSCS
T ss_pred cCCceEEcCCCCCcccceehHhhhhhhccccCCCeeEecCcch
Confidence 357899999 6643 44899999999999999984 454444
No 146
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=34.07 E-value=75 Score=23.84 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=19.8
Q ss_pred CEEEEEecCChhHHHHHH-HHHHHhhh
Q 041164 62 ERIAIGASGGKDSTVLAF-VLSELNRR 87 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~LL~-ll~~~~~~ 87 (357)
.+|+|+.++|.-|+.|+. -+++..++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~ 45 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQ 45 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHH
Confidence 479999999999988887 56555433
No 147
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.24 E-value=20 Score=25.05 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=18.7
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|+..-. ......++..||+.||.+.
T Consensus 43 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 43 VCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp BCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred CcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 5788875311 1223457889999999654
No 148
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=33.02 E-value=1.9e+02 Score=27.57 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=36.3
Q ss_pred EEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEE
Q 041164 65 AIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKI 127 (357)
Q Consensus 65 lVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~i 127 (357)
+++.+|-==|+++..++..+.++ |.++.++..|.. ++...+.++.+++..|+|++.
T Consensus 105 ivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~----R~aa~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 105 MVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTW----RPGAYHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCS----STHHHHHHHHHHGGGTCEEEC
T ss_pred EECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCc----chhHHHHHHHHHHhcCCcEEe
Confidence 34554444456666666666443 788888877753 345566777788888887654
No 149
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.99 E-value=14 Score=26.64 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=16.0
Q ss_pred ccccccCCCc--eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA--ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a--~~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|+..-. .+. ..++..||+.||.+.
T Consensus 53 ~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~ 82 (89)
T 1x64_A 53 VCADCNLNLKQKGYF-FVEGELYCETHARAR 82 (89)
T ss_dssp CCSSSCCCTTTSCCE-EETTEEECHHHHHHH
T ss_pred EecCCCCCCCCCCeE-eECCEEECHHHHHHH
Confidence 4666654311 122 236788999998654
No 150
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.80 E-value=23 Score=24.68 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=19.0
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..-. .-....++..+|+.||.+.+
T Consensus 43 ~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 43 VCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp BCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred ChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 5777875311 11223578899999997643
No 151
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=32.61 E-value=13 Score=24.39 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=17.9
Q ss_pred cccccccCCCceeecc--CCCccchHHHHH
Q 041164 14 RLCSTCNQRKAALKRP--KTLEQICRECFY 41 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~--~~~~~lC~~cf~ 41 (357)
..|+.|++.+..+... -.+...|.+|-.
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~ 41 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVD 41 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHH
Confidence 4799999754322221 235689999964
No 152
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.59 E-value=20 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=20.8
Q ss_pred ccccccCCCc---eeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKA---ALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a---~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..-+ .....+++..||+.||.+.+
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f 66 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHH
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHc
Confidence 6888886432 22345678999999997654
No 153
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.49 E-value=27 Score=24.47 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=18.7
Q ss_pred ccccccCCC--ceeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRK--AALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~--a~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..- ..+....++..||+.||.+.+
T Consensus 43 ~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 43 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp BCSSSCCBCTTSCEECCTTCCCEEHHHHHHHT
T ss_pred CcccCCCccCCCeeEECCCCEEECHHHHHHHh
Confidence 578887531 223333357899999996543
No 154
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.44 E-value=16 Score=24.95 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=17.2
Q ss_pred ccccccCCC-ceeeccCCCccchHHHHHH
Q 041164 15 LCSTCNQRK-AALKRPKTLEQICRECFYE 42 (357)
Q Consensus 15 ~C~~C~~~~-a~~~~~~~~~~lC~~cf~~ 42 (357)
+|..|+..- ......+++..||+.||.+
T Consensus 37 ~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 37 NCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp BCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred EeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 577777531 1112235788999999853
No 155
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=32.26 E-value=1.7e+02 Score=28.53 Aligned_cols=127 Identities=9% Similarity=0.081 Sum_probs=68.7
Q ss_pred CCCCCEEEEE------ecCChhHH--------H----HHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHH
Q 041164 58 FKAGERIAIG------ASGGKDST--------V----LAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEI 119 (357)
Q Consensus 58 ~~~~~kvlVa------~SGG~DS~--------~----LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~ 119 (357)
+.|.--|+|| +-||..-. + +..+.+....-.++|+.++ |.||. +....+++++.++++|+
T Consensus 309 l~P~avVlVATvRALK~hGG~~~~~l~~enl~al~~G~~NL~kHIen~~~fGvpvV-VaiN~-F~tDT~aEi~~v~~~~~ 386 (543)
T 3do6_A 309 FYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLPVV-VALNR-FSTDTEKEIAYVVKECE 386 (543)
T ss_dssp CCCSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEE-EEEEC-CTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeE-EEEeC-CCCCCHHHHHHHHHHHH
Confidence 5576678888 57775331 1 1233333221112476643 44664 34457888999999999
Q ss_pred HhCCCeEEEeeccccCCCHHHHHHH----hC--CCCCchhHHHHHHHHHHHHHHH-CCCCEEEcCCChhHHHHH
Q 041164 120 QYGLPLKIVSYKDLYGWTMDEIVKV----IG--LKNNCTFCGVFRRQALDRGASL-LKVDKIATGHNADDIAET 186 (357)
Q Consensus 120 ~lgi~~~iv~~~~~~~~~i~~~~~~----~~--~~~~c~~c~~~r~~~l~~~A~~-~g~~~I~tGh~~dD~aet 186 (357)
++|++..+-+.-..-|..-.++++. .. ...+.+.-..-...-+..+|++ +|++-|.+-..+..+.+.
T Consensus 387 ~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~ 460 (543)
T 3do6_A 387 KLGVRVAVSEVFKKGSEGGVELAKAVAEAAKDVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKF 460 (543)
T ss_dssp TTTCEEEEECHHHHGGGGSHHHHHHHHHHCCCCCCCCSSCTTSCHHHHHHHHHHHTSCCSEEEECHHHHHHHHH
T ss_pred HcCCCEEEechhhccchhHHHHHHHHHHHhcCCCcccccCCCCCHHHHHHHHHHHHcCCCeEEECHHHHHHHHH
Confidence 9999875544322223332333221 11 1111111122234557788876 799988886655554443
No 156
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=32.06 E-value=47 Score=25.28 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=28.3
Q ss_pred CCCCCEEEEEecCChh--HHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKD--STVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~D--S~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++.+|+|-..+|.. |..++.+|.+. |++ +..++-|+
T Consensus 68 l~~~~~ivvyC~~g~r~~s~~a~~~L~~~------G~~--v~~l~GG~ 107 (124)
T 3flh_A 68 LDPAKTYVVYDWTGGTTLGKTALLVLLSA------GFE--AYELAGAL 107 (124)
T ss_dssp SCTTSEEEEECSSSSCSHHHHHHHHHHHH------TCE--EEEETTHH
T ss_pred CCCCCeEEEEeCCCCchHHHHHHHHHHHc------CCe--EEEeCCcH
Confidence 4567788888888887 77888888887 887 55566665
No 157
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=31.98 E-value=1.6e+02 Score=21.88 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=37.5
Q ss_pred CCCEEEEEecCC--hhHHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 60 AGERIAIGASGG--KDSTVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 60 ~~~kvlVa~SGG--~DS~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
.++.++|-|.+. ..+...+..+.++.++++ .++.+..|.+|.. +.+.+.++++.+.+++++.++
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~-----~~~~~~~~~~~~~~~~~~~~~ 99 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNS-----EQNQQVVEDFIKANKLTFPIV 99 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGG-----SSCHHHHHHHHHHTTCCSCEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCC-----cCCHHHHHHHHHHcCCceeEE
Confidence 455666666543 344555555666655554 3566666666542 123556777888888876654
No 158
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.78 E-value=66 Score=20.98 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcccccccCCC-ceeeccCCCccchHHHHHHHHH
Q 041164 13 GRLCSTCNQRK-AALKRPKTLEQICRECFYEVFE 45 (357)
Q Consensus 13 ~~~C~~C~~~~-a~~~~~~~~~~lC~~cf~~~~~ 45 (357)
...|..|.... ..+.. .=|-.||..|....+.
T Consensus 20 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHH
Confidence 44799998642 22333 3466799999987765
No 159
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=31.74 E-value=1.5e+02 Score=25.36 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=34.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHhhhCCCCe-eEEEEEecCCC-CCCChhh-HHH-HHHHHHHhCCCe
Q 041164 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGL-DLFLLSIDEGI-SGYRDDS-LQT-VKRNEIQYGLPL 125 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~-~v~av~id~g~-~~~~~~~-~~~-v~~~~~~lgi~~ 125 (357)
+....|++|||.-=..+...|.+........+ +++++++|+-. ...++++ ..+ .+.+.++++++.
T Consensus 28 ~~~~~l~lsgGstp~~~~~~L~~~~~~~~~~w~~v~~f~~DEr~vp~~~~~Sn~~~~~~~l~~~~~~~~ 96 (238)
T 1y89_A 28 GQPVHISLSGGSTPKMLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDAESNYGEANALLFSKINMPA 96 (238)
T ss_dssp SSCEEEEECCSHHHHHHHHHHTSTTHHHHSCGGGEEEEESEEESSCTTSTTCHHHHHHHHTGGGSCCCG
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhhccCCChhHeEEEeceecCCCCCCHHHHHHHHHHHhhccCCCCH
Confidence 44688999999766666666643211000122 68888888543 2222222 222 233455566654
No 160
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=31.51 E-value=48 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=28.3
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCC
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGY 106 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~ 106 (357)
.++.+|+|-..+|..|..++.+|.++ |++ .+..++-|+.++
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~------G~~-~v~~l~GG~~~w 118 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEA------GIT-PAYNVLDGFEGH 118 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHT------TCC-SEEEETTTTTCC
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHc------CCc-ceEEEcCChhhh
Confidence 45567888888888898888888886 774 234568887554
No 161
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=31.51 E-value=48 Score=21.10 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=21.8
Q ss_pred cccccccccccc---------cccchhhHHHHHhhcCCC
Q 041164 291 QGTCERCGYISS---------QKWCKACVLLEGLNRGLP 320 (357)
Q Consensus 291 ~~~C~~Cg~p~~---------~~~c~~c~~~~~~~~~~~ 320 (357)
...|..||...+ ..+|.+|-|..+......
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~R 42 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNR 42 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCC
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCC
Confidence 456888887644 469999999888665543
No 162
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=31.09 E-value=13 Score=25.88 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=17.9
Q ss_pred cccccccCCCceeecc--CCCccchHHHHH
Q 041164 14 RLCSTCNQRKAALKRP--KTLEQICRECFY 41 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~--~~~~~lC~~cf~ 41 (357)
..|+.|++.+..+... -.+...|.+|-.
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~ 48 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVD 48 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHH
Confidence 4799999754322221 235689999954
No 163
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.00 E-value=14 Score=25.68 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=17.3
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|+..-. .-...+++..||+.||.+.
T Consensus 41 ~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 41 VCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp CCTTTCCCCGGGCSEEETTEEECHHHHHHH
T ss_pred eECCCCCCCCCCCeEeECCeEeCHHHHHHH
Confidence 4777765311 1122356888999998654
No 164
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.88 E-value=29 Score=26.24 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=21.2
Q ss_pred ccccccCCCc---eeeccCCCccchHHHHHHHHH
Q 041164 15 LCSTCNQRKA---ALKRPKTLEQICRECFYEVFE 45 (357)
Q Consensus 15 ~C~~C~~~~a---~~~~~~~~~~lC~~cf~~~~~ 45 (357)
+|..|+..-+ .....+++..||+.||.+.|.
T Consensus 32 ~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred cccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 6888886422 133456789999999976543
No 165
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=30.65 E-value=1.5e+02 Score=23.95 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEE--EEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLF--LLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKD 132 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~--av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~ 132 (357)
=|.||..||.-..++-+.. ||++. -++|--..+-..+...+.-+.+++-+|++...++++.
T Consensus 69 kga~S~~lL~~~~~~~~~~--G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKA 131 (152)
T 1iv3_A 69 RGERSEVFLREAMRLVEAR--GAKLLQASLVLTLDRPKLGPHRKALVDSLSRLMRLPQDRIGLTF 131 (152)
T ss_dssp TTCCHHHHHHHHHHHHHHT--TCCEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEEEEEEEEEEecCCcCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 3679999998777654443 55432 1122111111234444556778999999876666653
No 166
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=30.48 E-value=3.6e+02 Score=25.57 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhC-CC
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG-LP 124 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lg-i~ 124 (357)
.++...+.+++..-.|.+|+|... +--...++.+|.++ |.++..+..... .++..+.++++.+.++ ..
T Consensus 297 ~~~~~~~~d~~~~l~gkrv~i~~~-~~~~~~l~~~L~el------G~~vv~v~~~~~----~~~~~~~~~~ll~~~~~~~ 365 (458)
T 1mio_B 297 GQLIDLMIDAQQYLQGKKVALLGD-PDEIIALSKFIIEL------GAIPKYVVTGTP----GMKFQKEIDAMLAEAGIEG 365 (458)
T ss_dssp HHHHHHHHHTHHHHTTCEEEEEEC-HHHHHHHHHHHHTT------TCEEEEEEESSC----CHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcC-chHHHHHHHHHHHC------CCEEEEEEeCCC----CHHHHHHHHHHHHhcCCCC
Confidence 344455555433335777765532 23333344455444 999888877653 3455566777777776 44
Q ss_pred eEEE
Q 041164 125 LKIV 128 (357)
Q Consensus 125 ~~iv 128 (357)
..++
T Consensus 366 ~~v~ 369 (458)
T 1mio_B 366 SKVK 369 (458)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 3343
No 167
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=30.43 E-value=1.1e+02 Score=22.26 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCee-EEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLD-LFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~-v~av~id~g~ 103 (357)
+.++.+|+|-..+|..|..++.+|.+. |++ +. .++-|+
T Consensus 55 l~~~~~ivvyc~~g~rs~~a~~~L~~~------G~~~v~--~l~GG~ 93 (108)
T 1gmx_A 55 NDFDTPVMVMCYHGNSSKGAAQYLLQQ------GYDVVY--SIDGGF 93 (108)
T ss_dssp SCTTSCEEEECSSSSHHHHHHHHHHHH------TCSSEE--EETTHH
T ss_pred cCCCCCEEEEcCCCchHHHHHHHHHHc------CCceEE--EecCCH
Confidence 355667888777888999999999887 774 43 455554
No 168
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=29.54 E-value=1.7e+02 Score=23.38 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=39.4
Q ss_pred CCCEEEEEecCChhH--HHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 60 AGERIAIGASGGKDS--TVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 60 ~~~kvlVa~SGG~DS--~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
.|..++|-|.+.--. ...+-.|.++.++++ .++.+++|.+|.-.. ..+.+.+.++++++++++++.++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~-~~~~~~~~~~~~~~~~~~~~p~~ 118 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGK-QEPGSNEEIKEFAAGYNVKFDMF 118 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTT-CCCSCHHHHHHHHHHTTCCSEEB
T ss_pred CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCC-CCCCCHHHHHHHHHHcCCCCeee
Confidence 355677777654333 333444444433322 368888888875111 11223466788999999987765
No 169
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.40 E-value=21 Score=25.07 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=17.6
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~ 43 (357)
.|..|+..-. .-....++..+|+.||.+.
T Consensus 45 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 45 TCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp CCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred chhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 5777775311 1122346889999998654
No 170
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=29.23 E-value=17 Score=23.35 Aligned_cols=25 Identities=24% Similarity=0.813 Sum_probs=19.2
Q ss_pred cccccccCCCceeeccCCCccchHHH
Q 041164 14 RLCSTCNQRKAALKRPKTLEQICREC 39 (357)
Q Consensus 14 ~~C~~C~~~~a~~~~~~~~~~lC~~c 39 (357)
..|..|+. ...+.-...+...|..|
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKC 30 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSS
T ss_pred EeCcCCCC-cceEEcCCCCeEECccc
Confidence 46999985 46666666788999888
No 171
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.94 E-value=23 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=19.1
Q ss_pred Ccccccccccccc-cccccchhhHH
Q 041164 288 MPEQGTCERCGYI-SSQKWCKACVL 311 (357)
Q Consensus 288 ~~~~~~C~~Cg~p-~~~~~c~~c~~ 311 (357)
...+..|+.||++ -+.-+|..|-.
T Consensus 27 ~p~l~~c~~cGe~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 27 PPTLVPCPECKAMKPPHTVCPECGY 51 (60)
T ss_dssp CCCCEECTTTCCEECTTSCCTTTCE
T ss_pred CCceeECCCCCCeecceEEcCCCCc
Confidence 4578899999999 45778988863
No 172
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=28.64 E-value=1.4e+02 Score=23.01 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCEEEEEecCC---hhHHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGG---KDSTVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG---~DS~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
|+.++|.|-.| ......+-.|.++.++++ .|+.+++|.+| +.+.++++++++++++.++
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d---------~~~~~~~~~~~~~~~~~~~ 97 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD---------SVKSHDNFCAKQGFAFPLV 97 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS---------CHHHHHHHHHHHCCSSCEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC---------CHHHHHHHHHHhCCCceEE
Confidence 34555555433 333333334444433221 37888888775 2355677888888887765
No 173
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=28.54 E-value=69 Score=23.65 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++.+|+|-..+|.-|..++.+|.+. ||+. ++++-|+
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~------G~~~--~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEAN------GIDA--VNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTT------TCEE--EEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHc------CCCE--EEecChH
Confidence 456778888888888899888888876 8865 4666665
No 174
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=28.34 E-value=1.3e+02 Score=23.13 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=38.2
Q ss_pred CCEEEEEecCC--hh-HHHHHHHHHHHhhhCC-----CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 61 GERIAIGASGG--KD-STVLAFVLSELNRRHN-----YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 61 ~~kvlVa~SGG--~D-S~~LL~ll~~~~~~~~-----~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
|..++|-|.+. .+ ....+..|.++.++++ .++.++.|.+|... +..+.++++++++|+++..+.
T Consensus 23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~-----d~~~~~~~~~~~~~~~~~~l~ 94 (164)
T 2ggt_A 23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPER-----DTKEAIANYVKEFSPKLVGLT 94 (164)
T ss_dssp TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTT-----CCHHHHHHHHHTTCSSCEEEE
T ss_pred CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCC-----CCHHHHHHHHHHcCCCeEEEe
Confidence 55677766554 33 4444555555443321 26777777776431 224567888999998887653
No 175
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.16 E-value=29 Score=23.97 Aligned_cols=28 Identities=32% Similarity=0.680 Sum_probs=20.5
Q ss_pred ccccccCCCceeecc-CCCccchHHHHHHH
Q 041164 15 LCSTCNQRKAALKRP-KTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~-~~~~~lC~~cf~~~ 43 (357)
-|..|.. .|.+.-. =++..||..||.+.
T Consensus 10 WC~ICne-DAtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 10 WCCICNE-DATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCTTTCS-CCCEEETTTTSEEECSSHHHHH
T ss_pred eeEEeCC-CCeEEecCCCCceehHHHHHHH
Confidence 3999996 5665543 34789999999754
No 176
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=28.13 E-value=2.5e+02 Score=27.02 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=52.5
Q ss_pred EEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHh-CCCeEEEeeccccCCCHHHHH
Q 041164 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY-GLPLKIVSYKDLYGWTMDEIV 142 (357)
Q Consensus 64 vlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~l-gi~~~iv~~~~~~~~~i~~~~ 142 (357)
|.+++.++.|..-.+..+.+. |.++..++..+|. +....+.++++.+.+ ++++..-+.. +.+.
T Consensus 220 v~aavG~~~~~~~~a~~l~~a------G~d~I~id~a~g~---~~~~~~~v~~i~~~~p~~~Vi~g~v~-----t~e~-- 283 (490)
T 4avf_A 220 VGAAVGTGADTGERVAALVAA------GVDVVVVDTAHGH---SKGVIERVRWVKQTFPDVQVIGGNIA-----TAEA-- 283 (490)
T ss_dssp CEEEECSSTTHHHHHHHHHHT------TCSEEEEECSCCS---BHHHHHHHHHHHHHCTTSEEEEEEEC-----SHHH--
T ss_pred eeeeeccccchHHHHHHHhhc------ccceEEecccCCc---chhHHHHHHHHHHHCCCceEEEeeeC-----cHHH--
Confidence 445666667888887777776 7777776665653 566678888888888 6776654331 1222
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcC
Q 041164 143 KVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATG 177 (357)
Q Consensus 143 ~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tG 177 (357)
.+.+.+.|++.|.+|
T Consensus 284 --------------------a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 284 --------------------AKALAEAGADAVKVG 298 (490)
T ss_dssp --------------------HHHHHHTTCSEEEEC
T ss_pred --------------------HHHHHHcCCCEEEEC
Confidence 134567899999986
No 177
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.80 E-value=26 Score=23.74 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=19.5
Q ss_pred cCcccccccccccc-cccccchhhHH
Q 041164 287 KMPEQGTCERCGYI-SSQKWCKACVL 311 (357)
Q Consensus 287 ~~~~~~~C~~Cg~p-~~~~~c~~c~~ 311 (357)
....+..|+.||++ -+.-+|..|-.
T Consensus 26 ~~p~l~~c~~cG~~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKLSHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCEECTTBCCTTTCB
T ss_pred cCCCceECCCCCCEeCCceEcCCCCc
Confidence 34578899999999 45789988863
No 178
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=27.40 E-value=15 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=15.2
Q ss_pred CcccccccCCC-ceeeccCCCccchHHHH
Q 041164 13 GRLCSTCNQRK-AALKRPKTLEQICRECF 40 (357)
Q Consensus 13 ~~~C~~C~~~~-a~~~~~~~~~~lC~~cf 40 (357)
.-+|.+|++.- +.-.+...|..+-+.||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 34699999630 11233344555666665
No 179
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=27.33 E-value=1.5e+02 Score=24.14 Aligned_cols=62 Identities=6% Similarity=-0.046 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEEE--EEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLFL--LSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~a--v~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
-|.||..||.-..++-+.. ||++.= ++|--..+-..+.-.+.-+.+++.+|++...++++..
T Consensus 75 kga~S~~lL~~~~~~v~~~--G~~i~NvD~tii~q~PKl~p~~~~m~~~la~~L~~~~~~V~vKAt 138 (162)
T 3re3_A 75 KNIDSKFFLAEIKKMLDKK--QYSISNIDCTIIAQAPKMLPHIEKMRACLANILEIQISQINIKAT 138 (162)
T ss_dssp CCSCHHHHHHHHHHHHHHT--TCEEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEEEEEEEEEEcCCCcchhHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 4699999998777654433 554421 1221111112344445566789999999776766543
No 180
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.12 E-value=25 Score=25.35 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=16.7
Q ss_pred ccccccCCCce-eeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRKAA-LKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~a~-~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|+..-.. .....++..||+.||.+.
T Consensus 44 ~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 44 RCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp BCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred eeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 46666642111 123456788999998654
No 181
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=27.02 E-value=1.6e+02 Score=23.99 Aligned_cols=62 Identities=18% Similarity=-0.022 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEEE--EEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLFL--LSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~a--v~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
=|.||..||.-..++-+.. ||++.= ++|--..+-..+.-.+.-+.+++-+|++...++++..
T Consensus 70 kga~S~~lL~~~~~~v~~~--G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAt 133 (160)
T 1gx1_A 70 KGADSRELLREAWRRIQAK--GYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKAT 133 (160)
T ss_dssp TTCCHHHHHHHHHHHHHHT--TCEEEEEEEEEECSSSCCGGGHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEEEEEEEEEEcCCCcchHHHHHHHHHHHHHhCCCCceEEEEEc
Confidence 3679999998777654443 554421 1121111122344445567789999998777776543
No 182
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=27.01 E-value=2.8e+02 Score=23.33 Aligned_cols=17 Identities=0% Similarity=-0.107 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHhCCCeE
Q 041164 110 SLQTVKRNEIQYGLPLK 126 (357)
Q Consensus 110 ~~~~v~~~~~~lgi~~~ 126 (357)
..+.+++.+++.|+++.
T Consensus 62 ~~~~~~~~l~~~gl~i~ 78 (257)
T 3lmz_A 62 QIRAFHDKCAAHKVTGY 78 (257)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 33444444444444443
No 183
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.96 E-value=12 Score=26.49 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=16.2
Q ss_pred ccccccCCC-ceeeccCCCccchHHHHHH
Q 041164 15 LCSTCNQRK-AALKRPKTLEQICRECFYE 42 (357)
Q Consensus 15 ~C~~C~~~~-a~~~~~~~~~~lC~~cf~~ 42 (357)
.|..|+..- .... .+++..||..||.+
T Consensus 43 ~C~~C~~~L~~~~f-~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 43 NCANCGKELTADAR-ELKGELYCLPCHDK 70 (79)
T ss_dssp BCSSSCCBCCTTCE-EETTEEECHHHHHT
T ss_pred EeCCCCCccCCCCE-eECCEEeCHHHHHH
Confidence 577776431 1112 34688899999854
No 184
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.76 E-value=26 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=16.5
Q ss_pred ccccccCCCc-eeeccCCCccchHHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQICRECFY 41 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC~~cf~ 41 (357)
+|..|+..-. ......++..+|+.||.
T Consensus 48 ~C~~C~~~L~~~~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 48 HCKKCSVNLANKRFVFHQEQVYCPDCAK 75 (77)
T ss_dssp BCSSSCCBCTTSCCCEETTEECCHHHHH
T ss_pred EehhcCCCCCCCccEeECCEEEChHHhc
Confidence 5777775311 11224567889999984
No 185
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.32 E-value=48 Score=23.07 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=19.0
Q ss_pred ccccccCCC---ceeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRK---AALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~---a~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..- ..+.+..++..+|+.||.+.+
T Consensus 43 ~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 43 ACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp BCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 577787532 122223578899999996554
No 186
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=26.31 E-value=3.3e+02 Score=26.15 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEe
Q 041164 46 EEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSI 99 (357)
Q Consensus 46 ~kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~i 99 (357)
.++...+.++.-.-.|.||+|. -|+--+..++.+|.++ |.+++.+..
T Consensus 317 ~~~~~al~~~~~~l~GKrv~i~-~~~~~~~~l~~~L~El------Gmevv~~gt 363 (483)
T 3pdi_A 317 AKVRAALEPWRARLEGKRVLLY-TGGVKSWSVVSALQDL------GMKVVATGT 363 (483)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE-CSSSCHHHHHHHHHHH------TCEEEEECB
T ss_pred HHHHHHHHHHHHHhcCCEEEEE-CCCchHHHHHHHHHHC------CCEEEEEec
Confidence 3444555555433457888773 3343455566677777 998876533
No 187
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=26.17 E-value=58 Score=20.35 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=19.7
Q ss_pred ccccccccc---------ccccchhhHHHHHhhcCCCCc
Q 041164 293 TCERCGYIS---------SQKWCKACVLLEGLNRGLPKM 322 (357)
Q Consensus 293 ~C~~Cg~p~---------~~~~c~~c~~~~~~~~~~~~~ 322 (357)
.|..|+... ...+|.+|-+..+.......+
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~ 41 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 41 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCC
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCC
Confidence 466666542 236899999987776655443
No 188
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=25.90 E-value=3.3e+02 Score=24.36 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=44.1
Q ss_pred CeeEEEEEecCCCCCCChhh---HHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHH
Q 041164 91 GLDLFLLSIDEGISGYRDDS---LQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGAS 167 (357)
Q Consensus 91 g~~v~av~id~g~~~~~~~~---~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~ 167 (357)
|.+.+.++++.|.. ...+. ...+.+.|.++|+++.+.+.. |..+. .. ...+ ....++|.
T Consensus 138 GAdaV~~~i~~Gs~-~~~~~l~~i~~v~~~a~~~GlpvIie~~~---G~~~~--------~d----~e~i--~~aariA~ 199 (295)
T 3glc_A 138 NSCAVAAQVYIGSE-YEHQSIKNIIQLVDAGMKVGMPTMAVTGV---GKDMV--------RD----QRYF--SLATRIAA 199 (295)
T ss_dssp TCSEEEEEECTTST-THHHHHHHHHHHHHHHHTTTCCEEEEECC-------C--------CS----HHHH--HHHHHHHH
T ss_pred CCCEEEEEEECCCC-cHHHHHHHHHHHHHHHHHcCCEEEEECCC---CCccC--------CC----HHHH--HHHHHHHH
Confidence 88889999998843 22223 345667788899998775421 11000 00 0001 23567899
Q ss_pred HCCCCEEEcCCCh
Q 041164 168 LLKVDKIATGHNA 180 (357)
Q Consensus 168 ~~g~~~I~tGh~~ 180 (357)
+.|++.|-|+-+.
T Consensus 200 elGAD~VKt~~t~ 212 (295)
T 3glc_A 200 EMGAQIIKTYYVE 212 (295)
T ss_dssp HTTCSEEEEECCT
T ss_pred HhCCCEEEeCCCH
Confidence 9999999998664
No 189
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=25.83 E-value=26 Score=24.60 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=17.0
Q ss_pred cCChhHHHHHHHHHHHhhhC
Q 041164 69 SGGKDSTVLAFVLSELNRRH 88 (357)
Q Consensus 69 SGG~DS~~LL~ll~~~~~~~ 88 (357)
.||.||+.++.++..+.+.+
T Consensus 33 ~g~lDSl~~velv~~lE~~f 52 (80)
T 1dv5_A 33 TGLLDSMGTVQLLLELQSQF 52 (80)
T ss_dssp TSSCCSHHHHHHHHHHTTTS
T ss_pred ccCcChHHHHHHHHHHHHHh
Confidence 46799999999999987654
No 190
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=25.52 E-value=3.9e+02 Score=24.68 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=45.9
Q ss_pred CCEEEEEecCC-hhHH--------------HHHHHHHHHhhhCCCCeeEEEEEecCCCCCCC---hhhHHHHHHHHHH--
Q 041164 61 GERIAIGASGG-KDST--------------VLAFVLSELNRRHNYGLDLFLLSIDEGISGYR---DDSLQTVKRNEIQ-- 120 (357)
Q Consensus 61 ~~kvlVa~SGG-~DS~--------------~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~---~~~~~~v~~~~~~-- 120 (357)
+..|+|.+|-| ..-. .++.+++.+.+.+ ++ .+++|.|||....- +.-++..++.+.+
T Consensus 56 ~sPvIlq~s~g~~~~~~g~~~~~~~~~ga~~~a~~v~~~A~~~--~V-PVaLHlDHg~~~~~~~i~~~i~a~~~~~~~~~ 132 (357)
T 3qm3_A 56 NSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAY--GV-PVILHTDHAARKLLPWIDGLIEANAQYKKTHG 132 (357)
T ss_dssp TSCEEEEECHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHH--TC-EEEEEECCCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEcChhHHhhccCccchhhHHHHHHHHHHHHHHHHHHC--CC-cEEEECCCCCccchHHHHHHHHHhHHHHhhhc
Confidence 35799999843 2221 2233344443332 33 46999999963100 0111222222332
Q ss_pred -hCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCE
Q 041164 121 -YGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDK 173 (357)
Q Consensus 121 -lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~ 173 (357)
.|+.-+-+|.+.. .+++-. -+.+-+.++|...|..+
T Consensus 133 ~~GFtSVMiDgS~l---p~eENI--------------~~Tk~vv~~ah~~gvsV 169 (357)
T 3qm3_A 133 QALFSSHMLDLSEE---SLEENL--------------STCEVYLQKLDALGVAL 169 (357)
T ss_dssp SCSCSEEECCCTTS---CHHHHH--------------HHHHHHHHHHHHHTCEE
T ss_pred CCCCCEEEEeCCCC---CHHHHH--------------HHHHHHHHHHHHcCCeE
Confidence 3666666665432 333332 33455667777766543
No 191
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=24.96 E-value=1.5e+02 Score=25.38 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC--CChhhHHHHHHHHHHh
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG--YRDDSLQTVKRNEIQY 121 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~--~~~~~~~~v~~~~~~l 121 (357)
++.+.++++ |-++.|++.-+-+--.+-.++.. .+ -+.+.+++.|+.| +.+...+.++++.+..
T Consensus 103 ~~i~~i~~~-----G~k~gval~p~t~~e~l~~~l~~------~D-~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~ 167 (228)
T 3ovp_A 103 ALIKDIREN-----GMKVGLAIKPGTSVEYLAPWANQ------ID-MALVMTVEPGFGGQKFMEDMMPKVHWLRTQF 167 (228)
T ss_dssp HHHHHHHHT-----TCEEEEEECTTSCGGGTGGGGGG------CS-EEEEESSCTTTCSCCCCGGGHHHHHHHHHHC
T ss_pred HHHHHHHHc-----CCCEEEEEcCCCCHHHHHHHhcc------CC-eEEEeeecCCCCCcccCHHHHHHHHHHHHhc
Confidence 344455554 44788888765543232233321 12 2456677888866 4566677777776654
No 192
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=24.92 E-value=74 Score=24.30 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCee-EEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLD-LFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~-v~av~id~g~ 103 (357)
+.++.+|+|-..+|..|..++.+|.++ ||+ +. .++-|+
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~------G~~~v~--~l~GG~ 117 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHA------GFTGVK--DIVGGY 117 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHH------HCCSEE--EEECCH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHc------CCCCeE--EeCCcH
Confidence 456677888888889999999999887 664 43 356665
No 193
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=24.77 E-value=1.5e+02 Score=24.07 Aligned_cols=63 Identities=17% Similarity=0.076 Sum_probs=36.6
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEEEE--EecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLFLL--SIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~av--~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
=|.||..||.-..++-+.. ||++.=+ +|--..+-..+.-.+.-+.+++-+|++...++++...
T Consensus 71 kga~S~~lL~~~~~~v~~~--G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT 135 (159)
T 1t0a_A 71 KGADSRVLLRHCYALAKAK--GFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADVADINVKATT 135 (159)
T ss_dssp TTCCHHHHHHHHHHHHHHT--TEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHTTCCGGGEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEEEEEEEEEEcCCCcChHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 3679999998776654433 6654221 1111111123444455677899999997777765443
No 194
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=24.41 E-value=3.2e+02 Score=25.31 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhCCCCeeEEEEEecCCCCC---CChhhHHHHHHHHHHhC---CCeEEEeeccccCCCHHHHHHHhCCCCC
Q 041164 77 LAFVLSELNRRHNYGLDLFLLSIDEGISG---YRDDSLQTVKRNEIQYG---LPLKIVSYKDLYGWTMDEIVKVIGLKNN 150 (357)
Q Consensus 77 LL~ll~~~~~~~~~g~~v~av~id~g~~~---~~~~~~~~v~~~~~~lg---i~~~iv~~~~~~~~~i~~~~~~~~~~~~ 150 (357)
++.+++.+.+.+ ++ .+++|.|||... +-+..++..+++++..| +.-+-+|.+. ..+++-.
T Consensus 89 ~~~~v~~~A~~~--~V-PVaLHlDHg~~~~~~~i~~~i~a~~~~~~~~~~~gFtSVMiDgS~---~p~eENI-------- 154 (358)
T 1dos_A 89 GAHHVHQMAEHY--GV-PVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE---ESLQENI-------- 154 (358)
T ss_dssp HHHHHHHHHHHH--TC-EEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTT---SCHHHHH--------
T ss_pred HHHHHHHHHHHC--CC-CEEEECCCCCCccHHHHHHHHHHHHHHHHhcccCCCceEeecCCC---CCHHHHH--------
Confidence 455666554442 43 479999999741 01111233344555555 6667776653 2344332
Q ss_pred chhHHHHHHHHHHHHHHHCCCC
Q 041164 151 CTFCGVFRRQALDRGASLLKVD 172 (357)
Q Consensus 151 c~~c~~~r~~~l~~~A~~~g~~ 172 (357)
-..+-+.++|...|..
T Consensus 155 ------~~Tkevv~~ah~~gvs 170 (358)
T 1dos_A 155 ------EICSKYLERMSKIGMT 170 (358)
T ss_dssp ------HHHHHHHHHHHHTTCE
T ss_pred ------HHHHHHHHHHHHcCCE
Confidence 2335566778877664
No 195
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=24.28 E-value=2.2e+02 Score=22.58 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=39.6
Q ss_pred CCEEEEEecCCh--hHHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGGK--DSTVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG~--DS~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
|+.++|-|.+.- .+...+-.|.++.++++ .++.+++|.+|..... .+++.+.++++++++++++.++
T Consensus 47 gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~-e~~~~~~~~~~~~~~~~~~p~~ 116 (183)
T 2obi_A 47 GFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ-EPGSNEEIKEFAAGYNVKFDMF 116 (183)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTC-CCSCHHHHHHHHHTTTCCSEEB
T ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCC-CCCCHHHHHHHHHHcCCCceEE
Confidence 556777776543 33334444555443332 2678888877742111 1233566788899999988775
No 196
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.22 E-value=21 Score=24.64 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=17.7
Q ss_pred ccccccCCCc--eeeccCCCccchHHHHHH
Q 041164 15 LCSTCNQRKA--ALKRPKTLEQICRECFYE 42 (357)
Q Consensus 15 ~C~~C~~~~a--~~~~~~~~~~lC~~cf~~ 42 (357)
.|..|+..-+ ......++..||..|+..
T Consensus 33 ~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 33 LCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp CCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred EeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 5888875322 122234678999999853
No 197
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=23.70 E-value=3.1e+02 Score=25.14 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=54.8
Q ss_pred cccccccCC------CceeeccCC----CccchHHHHHHHH----------HHHHHHHHhhcCCCCCCCEEEEEecCChh
Q 041164 14 RLCSTCNQR------KAALKRPKT----LEQICRECFYEVF----------EEEIHQVIVGNQLFKAGERIAIGASGGKD 73 (357)
Q Consensus 14 ~~C~~C~~~------~a~~~~~~~----~~~lC~~cf~~~~----------~~kv~~~i~k~~l~~~~~kvlVa~SGG~D 73 (357)
.+|.-||.. ...-+++.. +..+|.-||.-.- ..+|+++++.+ .+..+-+++.++..-.
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~~~~~~~~C~Rc~~l~hy~~~~~v~~~~e~f~~~l~~i--~~~~~~il~VvD~~d~ 82 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPASSLEKEQVICQRCFRLKHYNEIQDVSLTDDDFLRILNGI--GKSDALVVKIVDIFDF 82 (368)
T ss_dssp ---------------------------------------------------CHHHHHHHHHH--HHSCCEEEEEEETTSH
T ss_pred ceeCCCcceeEcCCCCCCCCCChHHccCCCcEEhhhhhhhccCccccCCCCHHHHHHHHHHH--hccCcEEEEEEECCCC
Confidence 469999742 122222222 4689999985211 13455555543 2334467777776421
Q ss_pred HHHHHHHHHHHhhhCCCCeeEEEEE--ecCCCCCCC-hhhHHHHHHHHHHhCCC-eEEEeeccccCCCHHHHHHHhCCCC
Q 041164 74 STVLAFVLSELNRRHNYGLDLFLLS--IDEGISGYR-DDSLQTVKRNEIQYGLP-LKIVSYKDLYGWTMDEIVKVIGLKN 149 (357)
Q Consensus 74 S~~LL~ll~~~~~~~~~g~~v~av~--id~g~~~~~-~~~~~~v~~~~~~lgi~-~~iv~~~~~~~~~i~~~~~~~~~~~ 149 (357)
-......+.++.. +..+.+|. +|.-..... +...+.+++.++..|++ ..++.++...|.+++++...
T Consensus 83 ~~~~~~~l~~~~~----~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~----- 153 (368)
T 3h2y_A 83 NGSWLPGLHRFVG----NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADA----- 153 (368)
T ss_dssp HHHCCTTHHHHSS----SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHH-----
T ss_pred cccHHHHHHHHhC----CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhh-----
Confidence 1111122333211 22222221 232111111 12234456667888883 23444455556677776542
Q ss_pred CchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHcc
Q 041164 150 NCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRG 194 (357)
Q Consensus 150 ~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG 194 (357)
+.++. .+.+.++.|...- -.+.|.|.+.|
T Consensus 154 ------------l~~~~--~~~~i~~vG~~nv--GKStliN~L~~ 182 (368)
T 3h2y_A 154 ------------IEYYR--GGKDVYVVGCTNV--GKSTFINRMIK 182 (368)
T ss_dssp ------------HHHHH--TTSCEEEEEBTTS--SHHHHHHHHHH
T ss_pred ------------hhhhc--ccceEEEecCCCC--ChhHHHHHHHh
Confidence 11111 3567788887652 23344454444
No 198
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=23.70 E-value=1.6e+02 Score=24.53 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEEEEEecC---CC-CCCChhhHHHHHHHHHHhCCCeEEEeeccc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE---GI-SGYRDDSLQTVKRNEIQYGLPLKIVSYKDL 133 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~av~id~---g~-~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~ 133 (357)
-|.||..||.-..++-+.. ||++. +||- .+ +-..+...+.-+.+++.+|++...|+++..
T Consensus 92 kgadS~~lL~~~~~lv~~~--G~~I~--NvD~tIiaq~PKl~p~~~~mr~~la~~L~i~~~~VnVKAT 155 (183)
T 3f0d_A 92 KGADSRALLRECASRVAQA--GFAIR--NVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAK 155 (183)
T ss_dssp TTCCHHHHHHHHHHHHHHT--TEEEE--EEEEEEECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEEE--EEEEEEEcCCCcchhHHHHHHHHHHHHHCCCcceEEEEEe
Confidence 5789999998777654433 66542 2221 11 112344345566789999999777766543
No 199
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=23.67 E-value=1.1e+02 Score=24.00 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCCCCEEEEEecCC--hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGG--KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG--~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++.+|+|-..+| ..|..++.+|..+ |++ +..++-|+
T Consensus 69 l~~~~~ivvyC~~g~~~rs~~aa~~L~~~------G~~--v~~l~GG~ 108 (144)
T 3nhv_A 69 LSKEKVIITYCWGPACNGATKAAAKFAQL------GFR--VKELIGGI 108 (144)
T ss_dssp CCTTSEEEEECSCTTCCHHHHHHHHHHHT------TCE--EEEEESHH
T ss_pred CCCCCeEEEEECCCCccHHHHHHHHHHHC------CCe--EEEeCCcH
Confidence 44566777766666 7899989888886 886 45556665
No 200
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=23.60 E-value=27 Score=23.40 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=16.8
Q ss_pred ccccccCCCc-eeeccCCCccch-HHHHH
Q 041164 15 LCSTCNQRKA-ALKRPKTLEQIC-RECFY 41 (357)
Q Consensus 15 ~C~~C~~~~a-~~~~~~~~~~lC-~~cf~ 41 (357)
.|..|+..-. .-....++..|| ++||.
T Consensus 34 ~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 34 LCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp BCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred ECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 5888875311 112234688999 99984
No 201
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=23.39 E-value=2.1e+02 Score=22.08 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=38.4
Q ss_pred CCEEEEEecCC--hh-HHHHHHHHHHHhhhCC-----CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 61 GERIAIGASGG--KD-STVLAFVLSELNRRHN-----YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 61 ~~kvlVa~SGG--~D-S~~LL~ll~~~~~~~~-----~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
|..++|-|.+. .+ ....+..|.++.++++ .++.++.|.+|... ++.+.++++++++++++..+.
T Consensus 26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~-----d~~~~~~~~~~~~~~~~~~l~ 97 (171)
T 2rli_A 26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPER-----DDVEAMARYVQDFHPRLLGLT 97 (171)
T ss_dssp TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTT-----CCHHHHHHHHHTTCTTCCEEE
T ss_pred CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCC-----CCHHHHHHHHHHcCCCeEEEe
Confidence 45666666554 33 4555555665544331 36777777776421 234567888999998876653
No 202
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.12 E-value=39 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=19.2
Q ss_pred ccccccCCCceeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKAALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..-+.-...+++..||+.||.+.+
T Consensus 35 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f 64 (169)
T 2rgt_A 35 KCSDCHVPLAERCFSRGESVYCKDDFFKRF 64 (169)
T ss_dssp BCTTTCCBCCSCCEESSSCEECHHHHHHHH
T ss_pred ccCCCCCcCCCCCcccCCeeeecccccccc
Confidence 578887542111123589999999997643
No 203
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=23.08 E-value=3.1e+02 Score=25.22 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=40.5
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC--CChhhHHHHHHHHHHhCCCeEE
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG--YRDDSLQTVKRNEIQYGLPLKI 127 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~--~~~~~~~~v~~~~~~lgi~~~i 127 (357)
..+++|+| +-||.-.+=++..|.+. |.+|.+++-...+-. ..++..+.+.+..++.|++++.
T Consensus 143 ~~~~~vvV-iGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 206 (408)
T 2gqw_A 143 RPQSRLLI-VGGGVIGLELAATARTA------GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRF 206 (408)
T ss_dssp CTTCEEEE-ECCSHHHHHHHHHHHHT------TCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hcCCeEEE-ECCCHHHHHHHHHHHhC------CCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEe
Confidence 44567655 56777666677666665 788888876554322 3344456777788888987653
No 204
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=23.00 E-value=2.2e+02 Score=23.56 Aligned_cols=67 Identities=10% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCE-EEEEecCChh--HHHHHHHHHHHhhhCC-CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GER-IAIGASGGKD--STVLAFVLSELNRRHN-YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~k-vlVa~SGG~D--S~~LL~ll~~~~~~~~-~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
|++ ++|-|.+.-- +...+-.|.++.++++ .++.+++|.+|..-. ...++.+.++++++++++++.++
T Consensus 58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~-~~~d~~~~~~~~~~~~~~~~~~l 128 (218)
T 3u5r_E 58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQA-FPEETLERVGAEVKAYGYGFPYL 128 (218)
T ss_dssp TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTT-CGGGSHHHHHHHHHHHTCCSCEE
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccc-cccCCHHHHHHHHHHhCCCccEE
Confidence 444 6776665422 2333444555544432 367777777764321 22355778899999999887765
No 205
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=22.98 E-value=1.5e+02 Score=22.32 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=24.1
Q ss_pred CEEEEEecCChhHHHH-HHHHHHHhhhCCCCeeEEEEEec
Q 041164 62 ERIAIGASGGKDSTVL-AFVLSELNRRHNYGLDLFLLSID 100 (357)
Q Consensus 62 ~kvlVa~SGG~DS~~L-L~ll~~~~~~~~~g~~v~av~id 100 (357)
.+|+++.+.|.-|+.| ..-+.+..+.. |+++.+-+.+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~--gi~~~V~~~~ 59 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQCR 59 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEec
Confidence 4799999999998885 45565554443 5554444443
No 206
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.81 E-value=17 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.557 Sum_probs=17.1
Q ss_pred ccccccCCC-ceeeccCCCccchHHHHHHH
Q 041164 15 LCSTCNQRK-AALKRPKTLEQICRECFYEV 43 (357)
Q Consensus 15 ~C~~C~~~~-a~~~~~~~~~~lC~~cf~~~ 43 (357)
+|..|+..- ..-....++..||+.||.+.
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKSCYGKK 65 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSHHHHHH
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHHHHHHH
Confidence 477777421 11112346889999999643
No 207
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=22.80 E-value=3e+02 Score=22.32 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=39.7
Q ss_pred CCEEEEEecCChhHHH-HHHHHHHHhhhCCCCeeEEEEEecCC---------CCCCC----------hhhHHHHHHHHHH
Q 041164 61 GERIAIGASGGKDSTV-LAFVLSELNRRHNYGLDLFLLSIDEG---------ISGYR----------DDSLQTVKRNEIQ 120 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~-LL~ll~~~~~~~~~g~~v~av~id~g---------~~~~~----------~~~~~~v~~~~~~ 120 (357)
..+++|.+|-|.+..- +...+..+.. .++.+.+|.|-.. ..++. ..+.+.++++|+.
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~---~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~ 187 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAE---KGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKD 187 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHT---TTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHh---cCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHh
Confidence 4578888888876532 3344444432 2788888877431 10010 2335678888988
Q ss_pred hCCCeEEEe
Q 041164 121 YGLPLKIVS 129 (357)
Q Consensus 121 lgi~~~iv~ 129 (357)
-|-.++.+.
T Consensus 188 ~gG~~~~~~ 196 (218)
T 3ibs_A 188 GKGIYVRVD 196 (218)
T ss_dssp TEEEEEEEC
T ss_pred cCCEEEECC
Confidence 887666654
No 208
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.78 E-value=76 Score=21.26 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=21.1
Q ss_pred CcccccccCCCc-eeeccCCCccchHHHHHHHHH
Q 041164 13 GRLCSTCNQRKA-ALKRPKTLEQICRECFYEVFE 45 (357)
Q Consensus 13 ~~~C~~C~~~~a-~~~~~~~~~~lC~~cf~~~~~ 45 (357)
...|..|..... .+.. .=+-.||..|+..++.
T Consensus 20 ~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccCCeEEc-CCCChhhHHHHHHHHH
Confidence 457999986422 2333 4466799999876653
No 209
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=22.58 E-value=2.6e+02 Score=21.43 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=40.3
Q ss_pred CCCEEEEEecCCh--h-HHHHHHHHHHHhhhCC----CCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEe
Q 041164 60 AGERIAIGASGGK--D-STVLAFVLSELNRRHN----YGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS 129 (357)
Q Consensus 60 ~~~kvlVa~SGG~--D-S~~LL~ll~~~~~~~~----~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~ 129 (357)
.|..++|-|.+.- + +...+..+.++.++++ .++.++.|.+|.. .+..+.++++++++++++.++.
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~-----~d~~~~~~~~~~~~~~~~~~l~ 105 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPE-----RDPPEVADRYAKAFHPSFLGLS 105 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTT-----TCCHHHHHHHHHHHCTTEEEEC
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCC-----CCCHHHHHHHHHHhCCCcEEEe
Confidence 3556777665543 3 4555666666655543 1467777766642 1234567888999998887763
No 210
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.58 E-value=81 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.748 Sum_probs=16.8
Q ss_pred cccccccccccccc---cccchhhHH
Q 041164 289 PEQGTCERCGYISS---QKWCKACVL 311 (357)
Q Consensus 289 ~~~~~C~~Cg~p~~---~~~c~~c~~ 311 (357)
.....|..||+... .+.|..|.-
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~ 161 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGA 161 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCC
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCC
Confidence 35678999999743 358988863
No 211
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=22.17 E-value=4.8e+02 Score=24.24 Aligned_cols=135 Identities=13% Similarity=0.012 Sum_probs=73.8
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCC
Q 041164 61 GERIAIGASGGK---DSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWT 137 (357)
Q Consensus 61 ~~kvlVa~SGG~---DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~ 137 (357)
.++.=|.++|.. +..-++.++.+. |..|++-..-+++ ... .+ ...
T Consensus 255 ~~~~Ril~~G~p~~~~~~~l~~~le~~------G~~vV~~~~~~~~------------------~~~-----~~---~~~ 302 (408)
T 3o3m_A 255 EEKYRIMMEGIPCWPYIGYKMKTLAKF------GVNMTGSVYPHAW------------------ALQ-----YE---VND 302 (408)
T ss_dssp CCCEEEEEESCCCGGGHHHHHHHHHHH------TEEEEECSGGGTT------------------TCC-----CC---TTC
T ss_pred CCCceEEEECCCCcccHHHHHHHHHhC------CCEEEEEEccchh------------------hcc-----CC---chh
Confidence 455566777874 777777777775 6665542111111 110 00 011
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChhHHHHHHHHHHHccCccccccccccccCCCCCccccc
Q 041164 138 MDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCK 217 (357)
Q Consensus 138 i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~dD~aet~l~~l~rG~~~~l~~~~~~~~~~~~~i~~ir 217 (357)
++.+++.-- ..+|......|...+.+++++.+++-|+.-.+.. ..
T Consensus 303 l~~lA~~y~-~~~~~~~~~~r~~~i~~~~~~~~~DGvI~~~~~~----------------------------------C~ 347 (408)
T 3o3m_A 303 LDGMAVAYS-TMFNNVNLDRMTKYRVDSLVEGKCDGAFYHMNRS----------------------------------CK 347 (408)
T ss_dssp HHHHHHHHH-TSGGGBCHHHHHHHHHHHHHHTTCSEEEEEEESS----------------------------------CH
T ss_pred HHHHHHHHH-hcCccCChHHHHHHHHHHHHHcCCCEEEEecCCC----------------------------------Cc
Confidence 344443311 2345544557778888899999998776422110 11
Q ss_pred cCCcCCHHHHHHHH-HHHcCCcccccCCCC------CChhhHHHHHHHHHHHHH
Q 041164 218 PFKYTYEKEIMFTY-AYFKRLDYFSTECIY------SPNAYRGFAREFIKDLER 264 (357)
Q Consensus 218 PL~~~~k~EI~~~y-a~~~~i~~~~~~~~~------~~~~~r~~ir~~l~~Le~ 264 (357)
|.. +....+.. . .+..|||+..-+..+ +..-++.++..|+..|++
T Consensus 348 ~~~-~~~~~~~~-~~~~~~gIP~l~ie~D~~~~r~~~~~q~~TRieAF~Eml~~ 399 (408)
T 3o3m_A 348 LMS-LIQYEMQR-RAAEETGLPYAGFDGDQADPRAFTNAQFETRIQGLVEVMEE 399 (408)
T ss_dssp HHH-TTHHHHHH-HHHHHHCCCEEEEEECSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHH-HHHHhcCCCEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 111 23334453 3 367899986644333 444677778889988865
No 212
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=22.15 E-value=1.2e+02 Score=26.40 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCC--CChhhHHHHHH---HHHHh
Q 041164 47 EIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG--YRDDSLQTVKR---NEIQY 121 (357)
Q Consensus 47 kv~~~i~k~~l~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~--~~~~~~~~v~~---~~~~l 121 (357)
+..+.|+++ |-++.|++.-+-+=..+..++... + -|.+.+|+.|+.| +.+...+.+++ +..+.
T Consensus 125 ~~i~~ir~~-----G~k~Gvalnp~Tp~e~l~~~l~~v------D-~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~ 192 (246)
T 3inp_A 125 RSLQLIKSF-----GIQAGLALNPATGIDCLKYVESNI------D-RVLIMSVNPGFGGQKFIPAMLDKAKEISKWISST 192 (246)
T ss_dssp HHHHHHHTT-----TSEEEEEECTTCCSGGGTTTGGGC------S-EEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCeEEEEecCCCCHHHHHHHHhcC------C-EEEEeeecCCCCCcccchHHHHHHHHHHHHHHhc
Confidence 344445544 458888888664433333444321 3 2556688988865 33444554444 44455
Q ss_pred CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCC
Q 041164 122 GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGH 178 (357)
Q Consensus 122 gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh 178 (357)
|.++.+. -..|.+.+.+. .+.+.|++.++.|-
T Consensus 193 ~~~~~I~---VDGGI~~~ti~----------------------~~~~aGAD~~V~GS 224 (246)
T 3inp_A 193 DRDILLE---IDGGVNPYNIA----------------------EIAVCGVNAFVAGS 224 (246)
T ss_dssp TSCCEEE---EESSCCTTTHH----------------------HHHTTTCCEEEESH
T ss_pred CCCeeEE---EECCcCHHHHH----------------------HHHHcCCCEEEEeh
Confidence 6554331 12344433322 34567999999993
No 213
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=22.05 E-value=94 Score=21.51 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCCCEEEEEecCChhHHHHHHHHHHH
Q 041164 59 KAGERIAIGASGGKDSTVLAFVLSEL 84 (357)
Q Consensus 59 ~~~~kvlVa~SGG~DS~~LL~ll~~~ 84 (357)
.++++|+|-..+|..|..++.+|.++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~ 64 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEM 64 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHc
Confidence 45678888888899999999999886
No 214
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.02 E-value=43 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=19.6
Q ss_pred ccccccCCC-c-eeeccCCCccchHHHHHHHHH
Q 041164 15 LCSTCNQRK-A-ALKRPKTLEQICRECFYEVFE 45 (357)
Q Consensus 15 ~C~~C~~~~-a-~~~~~~~~~~lC~~cf~~~~~ 45 (357)
.|..|+..- . .-....++..||..||.+.+.
T Consensus 38 ~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 38 KCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp BCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 577887532 1 122345789999999965543
No 215
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=21.84 E-value=2.5e+02 Score=20.76 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=34.4
Q ss_pred CCEEEEEecCC--hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEE
Q 041164 61 GERIAIGASGG--KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIV 128 (357)
Q Consensus 61 ~~kvlVa~SGG--~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv 128 (357)
+..++|.|.+. ..+...+..+.++.+.++..+.+..+.+|..-. ..+.+.++++.+++++++.++
T Consensus 29 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 95 (148)
T 2b5x_A 29 EKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSED---DLDPGKIKETAAEHDITQPIF 95 (148)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTT---TSSHHHHHHHHHHTTCCSCEE
T ss_pred CCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCcc---ccCHHHHHHHHHHcCCCcceE
Confidence 34566665543 223334444445444433226666666654421 223556777888888776543
No 216
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=21.69 E-value=1.5e+02 Score=24.20 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHHHHhhhCCCCeeEEEE--EecCCCCCCChhhHHHHHHHHHHhCCCeEEEeecccc
Q 041164 70 GGKDSTVLAFVLSELNRRHNYGLDLFLL--SIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY 134 (357)
Q Consensus 70 GG~DS~~LL~ll~~~~~~~~~g~~v~av--~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~ 134 (357)
-|.||..||.-..++-+.. ||++.=+ +|--..+-..+.-.+.-+.+++-+|++...++++...
T Consensus 72 kga~S~~lL~~~~~~v~~~--G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT 136 (160)
T 2pmp_A 72 KGAASSVFIKEAVRLMDEA--GYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKT 136 (160)
T ss_dssp SSCCHHHHHHHHHHHHHHH--TEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHc--CCEEEEEEEEEEecCCcCHHHHHHHHHHHHHHHCCCcceEEEEEec
Confidence 3689999997666543322 6654222 1111111123444455677899999997777765443
No 217
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.47 E-value=1.9e+02 Score=26.42 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=37.1
Q ss_pred HHHHHHHHHHh-CCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCCCCEEEcCCChh
Q 041164 111 LQTVKRNEIQY-GLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNAD 181 (357)
Q Consensus 111 ~~~v~~~~~~l-gi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g~~~I~tGh~~d 181 (357)
...++++.+.. |+.+.++|.=..... ..... +...- . ....+.|..+|+++++..|+++|--.
T Consensus 144 ~~~ir~l~~~~gg~~lIVIDyLqlm~~--~~~~~--~r~~e--i--~~isr~LK~lAkel~vpVi~lsQl~R 207 (338)
T 4a1f_A 144 RLQLRKLKSQHKELGIAFIDYLQLMSG--SKATK--ERHEQ--I--AEISRELKTLARELEIPIIALVQLNR 207 (338)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEEECCCT--HHHHH--HCCCC--H--HHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred HHHHHHHHHhcCCCCEEEEechHHhcC--CCCCC--ChHHH--H--HHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 34566666777 889998885333211 11111 00000 0 02235688999999999999999654
No 218
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=21.22 E-value=1.2e+02 Score=23.16 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=27.9
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++.+|+|-..+|..|..++.+|.++ |++ .+..++-|+
T Consensus 83 ~~~~~~ivvyC~~G~rs~~a~~~L~~~------G~~-~v~~l~GG~ 121 (139)
T 2hhg_A 83 FQEDKKFVFYCAGGLRSALAAKTAQDM------GLK-PVAHIEGGF 121 (139)
T ss_dssp GGSSSEEEEECSSSHHHHHHHHHHHHH------TCC-SEEEETTHH
T ss_pred CCCCCeEEEECCCChHHHHHHHHHHHc------CCC-CeEEecCCH
Confidence 355678888888889999988888887 774 133445554
No 219
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=21.11 E-value=30 Score=22.95 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=21.4
Q ss_pred cccccccccCCcccccccCCCceeeccCCCccchHHHH
Q 041164 3 VAESKSKKAGGRLCSTCNQRKAALKRPKTLEQICRECF 40 (357)
Q Consensus 3 ~~~~~~~~~~~~~C~~C~~~~a~~~~~~~~~~lC~~cf 40 (357)
|+++++... ...|.+|+. ...+. .+.+...|..|=
T Consensus 9 v~~gki~~~-~~fCPkCG~-~~~ma-~~~dr~~C~kCg 43 (55)
T 2k4x_A 9 IADGKLVRK-HRFCPRCGP-GVFLA-EHADRYSCGRCG 43 (55)
T ss_dssp CCCCCCCCS-SCCCTTTTT-TCCCE-ECSSEEECTTTC
T ss_pred EcCCEEEEc-cccCcCCCC-ceeEe-ccCCEEECCCCC
Confidence 455555543 456999995 33322 345688898883
No 220
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=20.86 E-value=44 Score=33.90 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCcccccccCCCceeec----------cCCCccchHHHHHHHHHHHHHHHH
Q 041164 12 GGRLCSTCNQRKAALKR----------PKTLEQICRECFYEVFEEEIHQVI 52 (357)
Q Consensus 12 ~~~~C~~C~~~~a~~~~----------~~~~~~lC~~cf~~~~~~kv~~~i 52 (357)
.+.+|..||+..++... -+++..||.-|+.+.+..++.+..
T Consensus 266 ~g~kc~lcGE~~~~~~~~~~~~~~~~~~k~~E~Lc~~c~~KR~~p~~~~~~ 316 (693)
T 3ung_C 266 KGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIKRYYPVWIRSK 316 (693)
T ss_dssp -CCBCSSSSSSBCTTTTTSCHHHHHHHBGGGCCCCHHHHHHHHHHHHHHHH
T ss_pred CCceeeccCcccccccchhhhhhhhhhcccccccchhHHHHHhhHHHHHhh
Confidence 35689999986554211 136889999999988888765543
No 221
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=20.77 E-value=1.2e+02 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHHHHhhhCCCCeeEEEEEecCCC
Q 041164 58 FKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 103 (357)
Q Consensus 58 ~~~~~kvlVa~SGG~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~ 103 (357)
+.++.+|+|-..+|.-|..++.+|.++ |++ .+..++-|+
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~------G~~-~v~~l~GG~ 117 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREY------GFK-TIYNSEGGM 117 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHH------TCS-CEEEESSCH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHc------CCc-ceEEEcCcH
Confidence 455667888778888898888888887 774 133456665
No 222
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=20.72 E-value=1.7e+02 Score=23.36 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=37.5
Q ss_pred CeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCC
Q 041164 91 GLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLK 170 (357)
Q Consensus 91 g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g 170 (357)
|+.+.+++=+. ...++.+++.+|++ ++.-.. -+-..+..++++.|
T Consensus 55 g~~~~i~T~~~---------~~~~~~~~~~lgi~--~~~~~~------------------------~k~~~l~~~~~~~~ 99 (176)
T 3mmz_A 55 GLTMLILSTEQ---------NPVVAARARKLKIP--VLHGID------------------------RKDLALKQWCEEQG 99 (176)
T ss_dssp TCEEEEEESSC---------CHHHHHHHHHHTCC--EEESCS------------------------CHHHHHHHHHHHHT
T ss_pred CCeEEEEECcC---------hHHHHHHHHHcCCe--eEeCCC------------------------ChHHHHHHHHHHcC
Confidence 88887775221 24577889999998 322110 12233455556665
Q ss_pred ---CCEEEcCCChhHHH
Q 041164 171 ---VDKIATGHNADDIA 184 (357)
Q Consensus 171 ---~~~I~tGh~~dD~a 184 (357)
...+++|++.+|..
T Consensus 100 ~~~~~~~~vGD~~nD~~ 116 (176)
T 3mmz_A 100 IAPERVLYVGNDVNDLP 116 (176)
T ss_dssp CCGGGEEEEECSGGGHH
T ss_pred CCHHHEEEEcCCHHHHH
Confidence 45899999999975
No 223
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=20.69 E-value=1.2e+02 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCEEEEEecCChhHHHHH-HHHHHHhhhCCCCe-eEEEEEec
Q 041164 61 GERIAIGASGGKDSTVLA-FVLSELNRRHNYGL-DLFLLSID 100 (357)
Q Consensus 61 ~~kvlVa~SGG~DS~~LL-~ll~~~~~~~~~g~-~v~av~id 100 (357)
-.+|+|+.+.|.-|+.|+ .-+++..+.. ++ ++.+-+.+
T Consensus 13 ~kkIlvVC~sGmgTS~ml~~klkk~~~e~--gi~~~~V~~~~ 52 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSAMGAGVLRKKIQDA--GLSQISVTNSA 52 (125)
T ss_dssp CCEEEECCSSSSHHHHHHHHHHHHHHHHT--TCTTSEEEECC
T ss_pred ccEEEEECCCcHHHHHHHHHHHHHHHHHC--CCceEEEEEee
Confidence 358999999999999997 4666654443 44 43333443
No 224
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.60 E-value=3.6e+02 Score=24.04 Aligned_cols=76 Identities=16% Similarity=0.017 Sum_probs=45.2
Q ss_pred CEEEEEecCC--hhHHHHHHHHHHHhhhCCCCeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccC--CC
Q 041164 62 ERIAIGASGG--KDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYG--WT 137 (357)
Q Consensus 62 ~kvlVa~SGG--~DS~~LL~ll~~~~~~~~~g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~--~~ 137 (357)
-+|++++++. .|+.-++..+.++ |.+-..+.--+-.....+.-.++.+.+++..++|+.+.++....| .+
T Consensus 85 vpviaGvg~~~t~~ai~la~~a~~~------Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~ 158 (304)
T 3l21_A 85 ARVIAGAGTYDTAHSIRLAKACAAE------GAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIE 158 (304)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHH------TCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCC
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHc------CCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 4677776432 3333333444443 776655554443333233446778889999999999999876554 44
Q ss_pred HHHHHH
Q 041164 138 MDEIVK 143 (357)
Q Consensus 138 i~~~~~ 143 (357)
.+.+.+
T Consensus 159 ~~~~~~ 164 (304)
T 3l21_A 159 PDTIRA 164 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455544
No 225
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.32 E-value=48 Score=25.49 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=20.5
Q ss_pred ccccccCCCc---eeeccCCCccchHHHHHHHH
Q 041164 15 LCSTCNQRKA---ALKRPKTLEQICRECFYEVF 44 (357)
Q Consensus 15 ~C~~C~~~~a---~~~~~~~~~~lC~~cf~~~~ 44 (357)
+|..|+..-. .....+++..||+.||.+.+
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~ 63 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECHHHHHHHH
T ss_pred ccCcCCCccccCCCeEEEECCEEeecCchhhhC
Confidence 6888886421 12334689999999997654
No 226
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=20.28 E-value=2e+02 Score=23.20 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=38.8
Q ss_pred CeeEEEEEecCCCCCCChhhHHHHHHHHHHhCCCeEEEeeccccCCCHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHCC
Q 041164 91 GLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLK 170 (357)
Q Consensus 91 g~~v~av~id~g~~~~~~~~~~~v~~~~~~lgi~~~iv~~~~~~~~~i~~~~~~~~~~~~c~~c~~~r~~~l~~~A~~~g 170 (357)
|+++.+++=+ ....++.+++.+|+..+..... -+-..+..+++++|
T Consensus 62 g~~~~i~T~~---------~~~~~~~~~~~lgl~~~f~~~~-------------------------~K~~~~~~~~~~~g 107 (189)
T 3mn1_A 62 GVTTAIISGR---------KTAIVERRAKSLGIEHLFQGRE-------------------------DKLVVLDKLLAELQ 107 (189)
T ss_dssp TCEEEEECSS---------CCHHHHHHHHHHTCSEEECSCS-------------------------CHHHHHHHHHHHHT
T ss_pred CCEEEEEECc---------ChHHHHHHHHHcCCHHHhcCcC-------------------------ChHHHHHHHHHHcC
Confidence 8887776421 1245778889999876553220 11244556666666
Q ss_pred C---CEEEcCCChhHHH
Q 041164 171 V---DKIATGHNADDIA 184 (357)
Q Consensus 171 ~---~~I~tGh~~dD~a 184 (357)
. ..+++|++.+|..
T Consensus 108 ~~~~~~~~vGD~~nDi~ 124 (189)
T 3mn1_A 108 LGYEQVAYLGDDLPDLP 124 (189)
T ss_dssp CCGGGEEEEECSGGGHH
T ss_pred CChhHEEEECCCHHHHH
Confidence 4 5899999999975
Done!