RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 041164
(357 letters)
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 89.2 bits (222), Expect = 2e-20
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 20/162 (12%)
Query: 39 CFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLS 98
++ + ++F R+ I SGG DS VL VL +L + ++ L
Sbjct: 2 NPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFS-LKEVALAH 60
Query: 99 IDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGV-- 156
+ + + + K + + + + + K + +
Sbjct: 61 FNHMLRESAERDEEFCKEFAKERNMKIFVGK------EDVRAFAKENRM-------SLEE 107
Query: 157 ----FRRQALDRGASLLKVDKIATGHNADDIAETVLLNILRG 194
R + L D IAT H+ +D+ ET LL RG
Sbjct: 108 AGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRG 149
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 86.3 bits (214), Expect = 8e-19
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGIS 104
+++ I +QL G + +G SGG DS L V L R + L + +D
Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL--RDEWKLQVIAAHVDHMFR 59
Query: 105 GYR-DDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGV------F 157
G ++ ++ VKR ++ + + + + GL G
Sbjct: 60 GRESEEEMEFVKRFCVERRILCETAQ------IDVPAFQRSAGL-------GAQEAARIC 106
Query: 158 RRQALDRGASLLKVDKIATGHNADDIAETVLLNILRG 194
R + + +A GH+ DD ET+L+ ++RG
Sbjct: 107 RYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRG 143
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 81.7 bits (202), Expect = 2e-17
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 26/149 (17%)
Query: 52 IVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSL 111
+ N+ +I + SGG DSTVL L + R N G+ L + + G+S D +
Sbjct: 4 LTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQW-RTENPGVALRAIHVHHGLSANADAWV 62
Query: 112 QTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGV------FRRQALDRG 165
+ Q+ +PL + V++ G+ R QA R
Sbjct: 63 THCENVCQQWQVPLVVER------------VQLAQEGL-----GIEAQARQARYQAFAR- 104
Query: 166 ASLLKVDKIATGHNADDIAETVLLNILRG 194
+LL + + T + DD ET LL + RG
Sbjct: 105 -TLLPGEVLVTAQHLDDQCETFLLALKRG 132
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 67.9 bits (166), Expect = 1e-13
Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 45/188 (23%)
Query: 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122
+ + SGGKDS++ A +L + G + L++I+ G+ S + + G
Sbjct: 8 DVHVLFSGGKDSSLSAVILKK------LGYNPHLITINFGVI----PSYKLAEETAKILG 57
Query: 123 LPLKIVSYKDLYGWTMDEIVKVI---GLKNNCTFCGVFRRQALDRGASLLKVDKIATGHN 179
K+++ +++ +I + L+ A + +A G
Sbjct: 58 FKHKVITLDRKI---VEKAADMIIEHKYPGPA--IQYVHKTVLEILAD--EYSILADGTR 110
Query: 180 ADDIAETV-------------------LLNILRGDIARLSRCTL-ITTGEDGPIPRCKPF 219
DD + L+ + L+ + + G
Sbjct: 111 RDDRVPKLSYSEIQSLEMRKNIQYITPLMGFGYKTLRHLASEFFILEEIKSGTKL----- 165
Query: 220 KYTYEKEI 227
YE EI
Sbjct: 166 SSDYEAEI 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 38/204 (18%), Positives = 60/204 (29%), Gaps = 68/204 (33%)
Query: 170 KVDKIATGHNADDIAETVLL----NILRG-DI----ARL---SRCTLITTGE-------- 209
V+ G D + L L G DI A+L + TL+ T E
Sbjct: 71 LVEPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 210 ----DGPIPRCKP---FKYTYEKEIMFTYAYF----KRLDYFSTEC--IYSPNAYRGFAR 256
P + F+ E A F DYF E +Y Y
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDDYFE-ELRDLY--QTYHVLVG 185
Query: 257 EFIK--------------DLERLRPRAILDIIK--------SGENFRISTSTKMPEQGTC 294
+ IK D E++ + L+I++ +++ +S P G
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 295 ERCGYISSQKWCKACVLLEGLNRG 318
+ Y+ + K G G
Sbjct: 245 QLAHYVVT---AKLL----GFTPG 261
Score = 37.3 bits (86), Expect = 0.009
Identities = 46/260 (17%), Positives = 78/260 (30%), Gaps = 75/260 (28%)
Query: 130 YKDLYGWTMDEIVKVIGLKNNCT-----FCGVFRRQALDRGASLLKVDKIATGHNA---- 180
+KD YG+++ +IV NN F G + + + S + + I G
Sbjct: 1653 FKDTYGFSILDIV-----INNPVNLTIHFGGE-KGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 181 -DDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFT--YAYFKRL 237
+I E R + LS T T P + A F+ L
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSA-TQFTQ------PA------------LTLMEKAAFEDL 1747
Query: 238 ---------DYF---ST-ECIYSPNAYRGFAREF-IKDLERL---RPRAILDIIKSGENF 280
F S E Y+ A A I+ L + R + + E
Sbjct: 1748 KSKGLIPADATFAGHSLGE--YA--ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 281 RISTSTKM----PEQGTCERCGYISSQKWCKAC-----VLLEGLNRGLPKMGIVRSRGQN 331
R ++ M P + + Q + L+E +N + V + G
Sbjct: 1804 R--SNYGMIAINPGR-VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA-GDL 1859
Query: 332 ---NERTKDMKQNKGTKNIE 348
+ T + K + I+
Sbjct: 1860 RALDTVTNVLNFIK-LQKID 1878
Score = 31.9 bits (72), Expect = 0.44
Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 56/202 (27%)
Query: 36 CRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLS----ELNRRHNYG 91
E ++ +++ N AG+++ I G + V+S L YG
Sbjct: 341 ISNLTQEQVQDYVNKT---NSHLPAGKQVEISLVNGAKN----LVVSGPPQSL-----YG 388
Query: 92 LDLFL--LSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVS--YKDLYGWTMDEIVKVIG- 146
L+L L G+ R + + ++ LP V+ + + +I
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LP---VASPFHSHL---LVPASDLINK 441
Query: 147 --LKNNCTFCGVFRRQALDRGASL-LKVDKIATGHNADDIAETVLLNILRGDIARLSRCT 203
+KNN +F + + V G + ++ ++ I+
Sbjct: 442 DLVKNNVSF----------NAKDIQIPVYDTFDGSDLRVLSGSISERIVD---------- 481
Query: 204 LITTGEDGPI--PRCKPFKYTY 223
I P+ FK T+
Sbjct: 482 CIIR---LPVKWETTTQFKATH 500
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding
protein, RNA binding protein, tRNA modification,
4-thiouridine synthase; HET: AMP; 2.5A {Bacillus
anthracis} SCOP: c.26.2.6 d.308.1.1
Length = 413
Score = 39.5 bits (92), Expect = 0.001
Identities = 26/195 (13%), Positives = 56/195 (28%), Gaps = 17/195 (8%)
Query: 8 SKKAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVI-----VGNQLFKAGE 62
+ GG + + P E+ + + G G
Sbjct: 135 LPEIGGHILENTEDITVDVHNPD------VNVRVEIRSGYSYIMCDERMGAGGLPVGVGG 188
Query: 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122
++ + SGG DS V A++ +R G+ + + + + +
Sbjct: 189 KVMVLLSGGIDSPVAAYLTM---KR---GVSVEAVHFHSPPFTSERAKQKVIDLAQELTK 242
Query: 123 LPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182
++ + + I K I + T + +R A I TG +
Sbjct: 243 YCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQ 302
Query: 183 IAETVLLNILRGDIA 197
+A L ++ +
Sbjct: 303 VASQTLDSMHTINEV 317
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.5 bits (76), Expect = 0.058
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 1 MEVAESKSKKAGGR--------LCSTCNQRKAAL-KRPKTLEQICRECFYEVFEEEI 48
M ES K+AG R C C + +R + +C C V +++
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL-VLSDKL 56
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat
methyltransferase; alpha-beta, beta barrel, structural
genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus
pneumoniae}
Length = 376
Score = 33.7 bits (78), Expect = 0.072
Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 37/138 (26%)
Query: 62 ERIAIGASGGKDSTVLAFVLSELNRRHNY---GLDLFLLSIDEGISGY--RDDSLQTVKR 116
R+ +G SGG DS+V A +L + Y G+ + + +G + + V
Sbjct: 10 TRVVVGMSGGVDSSVTALLL----KEQGYDVIGIFMKNWDDTDE-NGVCTATEDYKDVVA 64
Query: 117 NEIQYGLPLKIVSYKDLYGWTMDEIVKVIG--LK--------NNCTFC------GVFRRQ 160
Q G+P V+++ Y W +V L N C F
Sbjct: 65 VADQIGIPYYSVNFEKEY-WD-----RVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDY 118
Query: 161 ALDRGASLLKVDKIATGH 178
A+ GA D +ATGH
Sbjct: 119 AITLGA-----DYVATGH 131
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 33.7 bits (78), Expect = 0.091
Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 36/141 (25%)
Query: 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNY---GLDLFLLSIDEGISGY--RDDSLQT 113
+ +++ +G SGG DS+V A++L ++ Y GL + D+G Y L
Sbjct: 15 ETAKKVIVGMSGGVDSSVSAWLL----QQQGYQVEGLFMKNWEEDDG-EEYCTAAADLAD 69
Query: 114 VKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIG--LK--------NNCTFC------GVF 157
+ + G+ L V++ Y W V L N C F
Sbjct: 70 AQAVCDKLGIELHTVNFAAEY-WD-----NVFELFLAEYKAGRTPNPDILCNKEIKFKAF 123
Query: 158 RRQALDRGASLLKVDKIATGH 178
L+ A L D IATGH
Sbjct: 124 ----LEFAAEDLGADYIATGH 140
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC;
1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A*
2zyn_A* 2dfz_A*
Length = 397
Score = 30.5 bits (69), Expect = 0.97
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 100 DEGISGYRDDSLQTVKRNEIQYGLPLKIVSY-----KDLY---GWTMDEIVKV 144
+ + + D +++ + YGLP I S K L T DE+ +
Sbjct: 101 NSVKNQFDDVAMKALTYGGKLYGLPKAIESVALIYNKKLMGQVPATYDELFQY 153
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 29.6 bits (67), Expect = 1.1
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 34/133 (25%)
Query: 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYR-DDSLQTVKRN 117
+ +S G + V L + + + L D +GY ++ + +
Sbjct: 42 NLPGEYVLSSSFGIQAAVSL----HLVNQIRPDIPVILT--D---TGYLFPETYRFIDEL 92
Query: 118 EIQYGLPLKIVS-----------YKDLYGWTMD------EIVKVIGLKN-------NCTF 153
+ L LK+ Y L+ ++ +I KV + F
Sbjct: 93 TDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWF 152
Query: 154 CGVFRRQALDRGA 166
G+ R Q+ R
Sbjct: 153 AGLRREQSGSRAN 165
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle,
thermoacidophIle, hyperthermophIle, thermophIle; HET:
MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP:
c.94.1.1 PDB: 1urg_A* 1urd_A*
Length = 402
Score = 30.1 bits (68), Expect = 1.1
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 96 LLSIDEGI---SGYRDDSLQTVKRNEIQYGLPLKIVSY-----KDLY---GWTMDEIVKV 144
+ + G+ Y +++ +K N Y +P+ + K L T E VK
Sbjct: 106 MAPVPSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVKD 165
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio
cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A*
1kit_A 2w68_A*
Length = 781
Score = 30.5 bits (67), Expect = 1.1
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 13 GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERI-AIGASGG 71
G+L Q A+ + +I I G+ +F+ +RI +I AS
Sbjct: 174 GKLIRDNIQPTASKQNMIVWGNGSSNTDGVAAYRDIKFEIQGDVIFRGPDRIPSIVASSV 233
Query: 72 KDSTVLAF 79
V AF
Sbjct: 234 TPGVVTAF 241
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 29.8 bits (68), Expect = 1.2
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 36/131 (27%)
Query: 221 YTYEKEIMFTYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERLRP----RAILDIIKS 276
Y + +F +F P + FA+E I + + +P + + +
Sbjct: 40 YKKYSQNVFDIDFFYS----------HPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEK 89
Query: 277 GENFRIST-----------STKMPE------QGTCERCGYISSQKWCKACVLLEGLNR-- 317
G + T S K+ E + C RC + + + +
Sbjct: 90 GLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCD 149
Query: 318 ---GLPKMGIV 325
L + IV
Sbjct: 150 DCNSLIRPNIV 160
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 29.7 bits (67), Expect = 1.5
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 61 GERIAIGASGGKDSTV------LAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTV 114
E+IA G G D+ + F LD +++ ID G+ G ++ V
Sbjct: 135 AEQIAHGKPSGIDTQTIVSGKPVWFQKGHAETLKTLSLDGYMVVIDTGVKGSTRQAVHDV 194
Query: 115 KR 116
+
Sbjct: 195 HK 196
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic
binding protein, pectin degradation, trigalacturonic
acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB:
2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Length = 408
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 92 LDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPL----KIVSY-KDL-------YGWTMD 139
+LF + ++ + LQ N G+P+ +I + Y T D
Sbjct: 83 YNLFSVKEQLDLAQFDPKELQQTTVNGKLNGIPISVTARIFYFNDATWAKAGLEYPKTWD 142
Query: 140 EIVKV 144
E++
Sbjct: 143 ELLAA 147
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein,
thermoph protein, periplasmic binding protein, sugar
binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Length = 386
Score = 28.9 bits (65), Expect = 2.6
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 100 DEGISGYRDDSLQTVKRNEIQYGLPLKIVSY-----KDLY---GWTMDEIVKV 144
++ + +++ GLP S K T +E + +
Sbjct: 85 QAYLADLQGVAVEAFTFGGRLMGLPAFAESVALIYNKKYVKEPPRTWEEFLAL 137
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose
binding protein, MBP fold, ABC transporter fold,
thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus
furiosus} SCOP: c.94.1.1
Length = 381
Score = 28.9 bits (65), Expect = 2.6
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 100 DEGISGYRDDSLQTVKRNEIQYGLPLKIVSY-----KDLYG---WTMDEIVKV 144
++ ++ + + ++ Y LP + K++ T DE+ +
Sbjct: 88 EDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMKAI 140
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein;
periplasmic binding protein, MBP, maltotriose; HET: MLR;
1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 28.9 bits (65), Expect = 2.6
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 96 LLSIDEGI--SGYRDDSLQTVKRNEIQYGLPLKIVSY-----KDLY---GWTMDEIVKV 144
+ I + + +L YG+P + + KD TMDE++++
Sbjct: 75 IEPIPNFSDLKNFYETALNAFSYGGKLYGIPYAMEAIALIYNKDYVPEPPKTMDELIEI 133
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo
sapiens} PDB: 3tjn_A 3nwu_A
Length = 231
Score = 28.4 bits (64), Expect = 3.1
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQT 113
+AIG+ +TV ++S R + G+ D +QT
Sbjct: 141 VAIGSPFSLQNTVTTGIVSTTQRG----------GKELGLRNSDMDYIQT 180
>3osr_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia
coli}
Length = 653
Score = 28.4 bits (63), Expect = 3.7
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 100 DEGISGYRDDSLQTVKRNEIQYGLPLKIVSY-----KDLY---GWTMDEIVKV 144
+ V+ N P+ + + KDL T +EI +
Sbjct: 119 KAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPAL 171
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch
domain, heterodimer, pyrophosphate, G protein; HET: GDP
AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 28.6 bits (63), Expect = 3.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 45 EEEIHQVIVGNQLFKAGERIAIGASGGKDSTVL 77
E IH + ++ + + S GKDS V+
Sbjct: 33 AESIH---IIREVAAEFDNPVMLYSIGKDSAVM 62
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 28.2 bits (63), Expect = 3.8
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 34/133 (25%)
Query: 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYR-DDSLQTVKRN 117
+ +S G + V L + + + L D +GY ++ + +
Sbjct: 43 NLPGEYVLSSSFGIQAAVSL----HLVNQIRPDIPVILT--D---TGYLFPETYRFIDEL 93
Query: 118 EIQYGLPLKIVS-----------YKDLYGWTMD------EIVKV-------IGLKNNCTF 153
+ L LK+ Y L+ ++ +I KV L F
Sbjct: 94 TDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWF 153
Query: 154 CGVFRRQALDRGA 166
G+ R Q+ R
Sbjct: 154 AGLRREQSGSRAN 166
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 28.3 bits (63), Expect = 4.1
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 20/115 (17%)
Query: 44 FEEEIH---QVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSID 100
FE++ V ++L E+ A+ G ++ + GL L I
Sbjct: 28 FEKDTGIKVTVEHPDKLE---EKFPQVAATGDGPDIIFWAHDRFGGYAQSGL---LAEIT 81
Query: 101 EGI---SGYRDDSLQTVKRNEIQYGLPLKIVSY-----KDLY---GWTMDEIVKV 144
+ V+ N P+ + + KDL T +EI +
Sbjct: 82 PAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPAL 136
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 28.0 bits (63), Expect = 4.6
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQT 113
+AIG+ +TV ++S R + G+ D +QT
Sbjct: 124 VAIGSPFSLQNTVTTGIVSTTQRG----------GKELGLRNSDMDYIQT 163
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine
nucleotide alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 27.9 bits (63), Expect = 4.9
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 46 EEIHQVIVG---NQLFKAG-ERIAIGASGGKDSTVLA 78
+E Q +V + E IG SGG DS V A
Sbjct: 10 KEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAA 46
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET:
AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB:
1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 27.7 bits (62), Expect = 6.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 46 EEIHQVIVG---NQLFKAG--ERIAIGASGGKDSTVLA 78
EE + V + L + + +G SGG+DST+
Sbjct: 20 EEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAG 57
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 27.9 bits (63), Expect = 6.5
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 45 EEEIHQV--IVGNQLFKAGERIAIGASGGKDSTVLAFVLSE 83
E E+ + + + SGG DSTV A +
Sbjct: 243 ELELKNIEKYKHD------HYVIAAMSGGIDSTVAAAYTHK 277
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center
for structural genomics of infec diseases, NADE, CSGI;
2.74A {Campylobacter jejuni}
Length = 249
Score = 27.5 bits (62), Expect = 6.8
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 46 EEIHQVIVG---NQLFKAG-ERIAIGASGGKDSTVLAFVLSE 83
++I + + ++ + + + +G SGG DS ++A +
Sbjct: 7 QKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKR 48
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI,
protein structure initiative; 2.20A {Burkholderia
pseudomallei}
Length = 285
Score = 27.3 bits (61), Expect = 6.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 46 EEIHQVIVG---NQLFKAG-ERIAIGASGGKDSTVLA 78
+ + +G + L AG +G SGG DS+
Sbjct: 27 RDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAG 63
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 27.3 bits (60), Expect = 7.5
Identities = 19/109 (17%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 59 KAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYR-DDSLQTVKRN 117
G+ + I SG +D VL ++ + N + +F S+D +G ++ + + +
Sbjct: 52 HFGDELWISFSGAEDV-----VLVDMAWKLNRNVKVF--SLD---TGRLHPETYRFIDQV 101
Query: 118 EIQYGLPLKIVSYKDLYGWTMDEIVKVIGL--KNNCTFCGVFRRQALDR 164
YG+ + ++S + + + + CG+ + + L R
Sbjct: 102 REHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKR 150
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_2
Length = 208
Score = 27.0 bits (59), Expect = 8.4
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 6 SKSKKAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIV--GNQLFKA 60
K + GGR+ +R RP ++ ++ + + I V V G+ F+A
Sbjct: 9 HKRRATGGRMPVHRKKRAFEKGRPISMTKLTTQSTTITEKRRIRPVRVRGGHLKFRA 65
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 27.2 bits (61), Expect = 9.3
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 46 EEIHQVIVG---NQLFKAG-ERIAIGASGGKDSTVLA 78
++ + V + K G + +G SGG+DST+
Sbjct: 19 KQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAG 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,469,187
Number of extensions: 335310
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 50
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)