RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 041164
(357 letters)
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 78.6 bits (192), Expect = 1e-17
Identities = 45/228 (19%), Positives = 76/228 (33%), Gaps = 17/228 (7%)
Query: 55 NQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTV 114
N+ +I + SGG DSTVL L + R N G+ L + + G+S D +
Sbjct: 7 NRQLLTSRQILVAFSGGLDSTVLLHQLVQW-RTENPGVALRAIHVHHGLSANADAWVTHC 65
Query: 115 KRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKI 174
+ Q+ +PL + + E + + +LL + +
Sbjct: 66 ENVCQQWQVPLVVERVQLAQEGLGIE-------------AQARQARYQAFARTLLPGEVL 112
Query: 175 ATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYF 234
T + DD ET LL + RG + E +P E + +A
Sbjct: 113 VTAQHLDDQCETFLLALKRGSGPA-GLSAMAEVSEFAGTRLIRPLLARTRGE-LVQWARQ 170
Query: 235 KRLDYFSTECIYSPNAYRGFAR-EFIKDLERLRPRAILDIIKSGENFR 281
L + E + R F R + L++ P +S
Sbjct: 171 YDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCA 218
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 66.2 bits (160), Expect = 2e-13
Identities = 48/222 (21%), Positives = 79/222 (35%), Gaps = 17/222 (7%)
Query: 46 EEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISG 105
++ + ++F R+ I SGG DS VL VL +L + ++ L + +
Sbjct: 9 RKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLK-EVALAHFNHMLRE 67
Query: 106 YRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRR-QALDR 164
+ + K + ++ D + + G F R + L
Sbjct: 68 SAERDEEFCKEFAKER--------NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKE 119
Query: 165 GASLLKVDKIATGHNADDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYE 224
D IAT H+ +D+ ET LL RG + + +P Y
Sbjct: 120 ILESEGFDCIATAHHLNDLLETSLLFFTRG-----TGLDGLIGFLPKEEVIRRPLYYVKR 174
Query: 225 KEIMFTYAYFKRLDYFSTECIYSPNAYRGFAR-EFIKDLERL 265
EI YA FK L + E Y + R R I +L+R+
Sbjct: 175 SEIE-EYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRI 215
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 65.3 bits (158), Expect = 6e-13
Identities = 33/233 (14%), Positives = 66/233 (28%), Gaps = 29/233 (12%)
Query: 61 GERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQ 120
G ++ + SGG DS V A++ G+ + + + + +
Sbjct: 4 GGKVMVLLSGGIDSPVAAYLT------MKRGVSVEAVHFHSPPFTSERAKQKVIDLAQEL 57
Query: 121 YGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNA 180
++ + + I K I + T + +R A I TG +
Sbjct: 58 TKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESL 117
Query: 181 DDIAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIMFTYAYFKRLDYF 240
+A L ++ T E P +P + EI+ A
Sbjct: 118 GQVASQTL-------------DSMHTINEVTNYPVIRPLITMDKLEII-KIAEEIGTYDI 163
Query: 241 ST----ECIYSPNAYRGFAREFIKDLERLRPR-----AILDIIKSGENFRIST 284
S +C + + R + I + + + E + T
Sbjct: 164 SIRPYEDCCTVFTPASPATKPKREKANRFEAKYDFTPLIDEAVANKETMVLQT 216
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 40.8 bits (94), Expect = 1e-04
Identities = 25/204 (12%), Positives = 50/204 (24%), Gaps = 14/204 (6%)
Query: 42 EVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDE 101
+ E E +I ++ + + S GKDS V+ + + + +
Sbjct: 9 KQLEAESIHII--REVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 66
Query: 102 GISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQA 161
+ + + + GL L D ++ + ++ A
Sbjct: 67 ----KFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQ-A 121
Query: 162 LDRGASLLKVDKIATGHNADDIAETVLLNILRGDI------ARLSRCTLITTGEDGPIPR 215
LD+ E V G R
Sbjct: 122 LDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIR 181
Query: 216 CKPFKYTYEKEIMFTYAYFKRLDY 239
P E +I + Y Y + +
Sbjct: 182 VFPLSNWTELDI-WQYIYLEGIPI 204
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 39.7 bits (91), Expect = 1e-04
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 13/166 (7%)
Query: 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122
+I + SGG D++++ L E R + +E + + ++ +
Sbjct: 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEE----VEEAREKALRTGASKAI 57
Query: 123 LPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGASLLKVDKIATGHNADD 182
+ + + M ++ R + +IA A+
Sbjct: 58 ALDLKEEFVRDFVFPMMRA-------GAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEA 110
Query: 183 IAETVLLNILRGDIARLSRCTLITTGEDGPIPRCKPFKYTYEKEIM 228
IA D R + I + + + KE++
Sbjct: 111 IAHGATGK--GNDQVRFELTAYALKPDIKVIAPWREWSFQGRKEMI 154
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 35.1 bits (79), Expect = 0.006
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 62 ERIAIGASGGKDSTVLAFVLSELN 85
E++ + SGG D++V+ L E
Sbjct: 2 EKVVLAYSGGLDTSVILKWLCEKG 25
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 31.9 bits (71), Expect = 0.080
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 58 FKAGERIAIGASGGKDSTVLAFVLSE 83
G+RI I SGG D++ + +
Sbjct: 7 LPVGQRIGIAFSGGLDTSAALLWMRQ 32
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 28.9 bits (63), Expect = 0.76
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 62 ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQY 121
+++ +G SGG DS+V A +L ++ + + +++ Q + +
Sbjct: 21 DKVILGLSGGVDSSVTAMLLHRAIGKNLTCVF------VDNGLLRLNEAEQVLDMFGDHF 74
Query: 122 GLPLKIVSYKDLY 134
GL + V +D +
Sbjct: 75 GLNIVHVPAEDRF 87
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase
{Pectobacterium carotovorum [TaxId: 554]}
Length = 296
Score = 28.8 bits (63), Expect = 1.0
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 37 RECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHN 89
RE + + ++ + L + + I SGG DS+++ + S ++ N
Sbjct: 11 REPLLALIDRYLNAPL--EDLAPRFDTVGIPLSGGLDSSLVTALASRHFKKLN 61
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 26.2 bits (57), Expect = 1.2
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 9 KKAGGRLCSTCNQRKAALKRPKTLEQICRECF 40
++ G C+ C+ + A K ++C CF
Sbjct: 28 RQCGNIFCAECSAKNALTPSSKKPVRVCDACF 59
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 27.6 bits (60), Expect = 2.2
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 55 NQLFKAG-ERIAIGASGGKDSTVLAFVLSELNRRHNYGLDL 94
++ K G +++ G SGG DS V+ + ++ + + + L +
Sbjct: 16 KEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLM 56
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 27.2 bits (60), Expect = 3.9
Identities = 17/113 (15%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 42 EVFEEEIHQVI--VGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSI 99
E F +E+ + G +L G+ + + + + L + +N+ + L + L
Sbjct: 56 EEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKL---IPVINKIKDVDLVIVFLEE 112
Query: 100 DEGISGYRDDSL-QTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNC 151
+ Y+ L VKR ++ +P +++ + L + ++ + +
Sbjct: 113 YPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVAEQVLA 165
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate
reductase), N-terminal domain {Shewanella oneidensis
[TaxId: 70863]}
Length = 90
Score = 25.5 bits (55), Expect = 4.2
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 16 CSTCNQRKAALKRPKTLEQICRECFY 41
C +C++ C+ C
Sbjct: 14 CESCHKDGTPSADGAFEFAQCQSCHG 39
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 26.5 bits (58), Expect = 4.4
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122
+A+ SGGKDS A + + L + ++S +E Y +++ G
Sbjct: 5 DVAVLYSGGKDSN-YALYWALKSGLRVRYL-VSMVSENEESYMYHTPNVELTSLQARALG 62
Query: 123 LPLKIVSYKDLYGWTMDEIVKVI 145
+P+ K ++++ V+
Sbjct: 63 IPIIKGFTKGEKEKEVEDLKNVL 85
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 26.5 bits (57), Expect = 5.3
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 63 RIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEG 102
R + SGG+DST D+ ++ D G
Sbjct: 3 RAVVVFSGGQDSTTCLIQA------LQDYDDVHCITFDYG 36
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 26.2 bits (57), Expect = 6.1
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 64 IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYG 122
I+I S + A VL L R + L++ D + + + + G
Sbjct: 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD---GFLHPNQVLKERGLMKKKG 138
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 115
Score = 25.1 bits (55), Expect = 7.0
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 251 YRGFAREFIKDLERLRPRAILDIIKSGENF 280
Y F E +K+ R R ++D+ K
Sbjct: 40 YGSF-LETVKNARRWTRRTVIDVAKGEVRK 68
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.6 bits (55), Expect = 9.3
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 45 EEEIHQVIVG--NQLFKAG--ERIAIGASGGKDSTVLAFV 80
EEEI + + + L + + +G SGG+DST+ +
Sbjct: 19 EEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKL 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,341,667
Number of extensions: 65387
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 22
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)