Query 041165
Match_columns 85
No_of_seqs 136 out of 1079
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 4.4E-30 1.5E-34 160.5 8.9 81 4-85 17-97 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.3E-30 2.2E-34 155.0 8.6 74 11-85 1-74 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1E-29 3.5E-34 154.8 9.1 71 14-85 1-71 (107)
4 2dim_A Cell division cycle 5-l 100.0 3.8E-30 1.3E-34 146.5 5.2 67 8-75 3-69 (70)
5 3osg_A MYB21; transcription-DN 100.0 2E-29 6.9E-34 157.4 8.5 76 8-85 5-80 (126)
6 3zqc_A MYB3; transcription-DNA 100.0 4.2E-29 1.4E-33 156.8 9.0 71 14-85 2-72 (131)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 9.1E-28 3.1E-32 154.6 7.5 78 7-85 51-128 (159)
8 1h89_C C-MYB, MYB proto-oncoge 99.9 1.8E-27 6E-32 153.2 3.7 74 11-85 3-76 (159)
9 2d9a_A B-MYB, MYB-related prot 99.9 1.8E-24 6.2E-29 119.6 6.7 57 9-66 3-59 (60)
10 1gvd_A MYB proto-oncogene prot 99.9 4.5E-24 1.6E-28 114.9 5.9 52 12-64 1-52 (52)
11 1guu_A C-MYB, MYB proto-oncoge 99.9 8.5E-24 2.9E-28 113.8 5.8 52 12-64 1-52 (52)
12 1ity_A TRF1; helix-turn-helix, 99.9 1.2E-23 4.1E-28 119.2 6.4 63 8-71 4-68 (69)
13 1x41_A Transcriptional adaptor 99.9 2.6E-22 8.7E-27 111.0 6.7 55 9-64 3-57 (60)
14 2roh_A RTBP1, telomere binding 99.9 4.2E-22 1.4E-26 123.8 8.4 75 9-84 26-110 (122)
15 3sjm_A Telomeric repeat-bindin 99.9 1.5E-22 5E-27 113.5 5.6 57 10-66 7-64 (64)
16 2juh_A Telomere binding protei 99.9 3.6E-22 1.2E-26 123.9 7.7 76 8-84 11-96 (121)
17 2din_A Cell division cycle 5-l 99.9 9E-23 3.1E-27 114.7 3.7 60 7-69 2-61 (66)
18 1w0t_A Telomeric repeat bindin 99.9 9.2E-22 3.1E-26 106.3 5.8 49 13-62 1-51 (53)
19 2yum_A ZZZ3 protein, zinc fing 99.8 1.4E-21 5E-26 112.1 5.3 61 8-69 2-67 (75)
20 2elk_A SPCC24B10.08C protein; 99.8 3.5E-21 1.2E-25 105.9 6.6 53 9-61 4-56 (58)
21 2cu7_A KIAA1915 protein; nucle 99.8 2.6E-21 8.7E-26 110.4 5.2 59 7-67 2-60 (72)
22 2llk_A Cyclin-D-binding MYB-li 99.8 1.3E-20 4.5E-25 107.9 6.8 60 3-66 12-71 (73)
23 3zqc_A MYB3; transcription-DNA 99.8 9.8E-21 3.3E-25 118.5 2.7 65 7-73 47-111 (131)
24 2ckx_A NGTRF1, telomere bindin 99.8 5.8E-19 2E-23 103.3 7.9 68 15-83 1-78 (83)
25 1ign_A Protein (RAP1); RAP1,ye 99.8 2.3E-19 7.8E-24 121.8 6.6 75 9-84 3-111 (246)
26 2aje_A Telomere repeat-binding 99.8 7.1E-19 2.4E-23 106.8 6.8 76 7-83 6-91 (105)
27 1gv2_A C-MYB, MYB proto-oncoge 99.8 1.6E-18 5.5E-23 104.6 6.2 56 7-64 49-104 (105)
28 2yus_A SWI/SNF-related matrix- 99.7 2.3E-18 8E-23 99.9 5.9 52 7-60 11-62 (79)
29 2cqr_A RSGI RUH-043, DNAJ homo 99.7 4.6E-18 1.6E-22 97.3 6.0 56 7-63 11-69 (73)
30 2k9n_A MYB24; R2R3 domain, DNA 99.7 6.5E-18 2.2E-22 102.4 6.4 55 7-63 46-100 (107)
31 2ltp_A Nuclear receptor corepr 99.6 3.1E-19 1.1E-23 105.6 0.0 55 7-63 9-63 (89)
32 1h8a_C AMV V-MYB, MYB transfor 99.7 1E-17 3.5E-22 104.3 6.5 55 7-63 72-126 (128)
33 3osg_A MYB21; transcription-DN 99.7 4.4E-18 1.5E-22 105.8 3.7 55 7-63 55-109 (126)
34 2cjj_A Radialis; plant develop 99.6 3.1E-15 1.1E-19 89.0 4.9 49 12-61 6-57 (93)
35 1x58_A Hypothetical protein 49 99.5 5.7E-14 1.9E-18 77.7 5.3 50 12-63 6-58 (62)
36 2eqr_A N-COR1, N-COR, nuclear 99.4 7.7E-13 2.6E-17 73.0 6.3 52 8-61 6-57 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 99.4 1.1E-12 3.9E-17 74.6 5.5 52 10-63 4-58 (72)
38 1fex_A TRF2-interacting telome 99.2 3E-11 1E-15 66.2 4.3 48 14-62 2-58 (59)
39 2iw5_B Protein corest, REST co 99.2 5.8E-11 2E-15 80.1 6.4 50 12-63 131-180 (235)
40 1wgx_A KIAA1903 protein; MYB D 99.1 1.7E-10 5.7E-15 65.7 5.9 49 14-63 8-59 (73)
41 2llk_A Cyclin-D-binding MYB-li 98.9 6.2E-10 2.1E-14 63.4 2.7 32 54-85 10-41 (73)
42 3hm5_A DNA methyltransferase 1 98.8 1.2E-08 4.2E-13 60.4 5.5 50 12-62 28-81 (93)
43 2yqk_A Arginine-glutamic acid 98.7 3E-08 1E-12 54.7 5.8 51 8-60 3-54 (63)
44 1ug2_A 2610100B20RIK gene prod 98.7 6.6E-08 2.3E-12 56.8 7.2 45 16-61 35-81 (95)
45 4eef_G F-HB80.4, designed hema 98.7 5.3E-09 1.8E-13 59.4 1.5 44 14-58 20-66 (74)
46 2xag_B REST corepressor 1; ami 98.6 4.6E-08 1.6E-12 72.1 6.3 48 12-61 378-425 (482)
47 2din_A Cell division cycle 5-l 98.5 1.2E-07 4.1E-12 52.4 3.1 26 60-85 2-27 (66)
48 2ebi_A DNA binding protein GT- 98.4 1.3E-07 4.6E-12 54.7 3.1 49 13-61 3-63 (86)
49 2lr8_A CAsp8-associated protei 97.8 3.4E-08 1.2E-12 55.2 0.0 46 15-62 15-62 (70)
50 2crg_A Metastasis associated p 98.3 7.8E-07 2.7E-11 49.9 4.9 46 13-60 7-53 (70)
51 4a69_C Nuclear receptor corepr 98.3 7.4E-07 2.5E-11 52.7 4.7 45 14-60 43-87 (94)
52 2d9a_A B-MYB, MYB-related prot 98.2 1.2E-06 4E-11 47.5 3.5 24 62-85 3-26 (60)
53 2cu7_A KIAA1915 protein; nucle 98.1 2.7E-06 9.2E-11 47.7 3.5 25 61-85 3-27 (72)
54 1x41_A Transcriptional adaptor 98.0 5E-06 1.7E-10 45.1 3.5 24 62-85 3-26 (60)
55 4iej_A DNA methyltransferase 1 98.0 1.3E-05 4.6E-10 47.2 5.6 50 12-62 28-81 (93)
56 1gvd_A MYB proto-oncogene prot 98.0 4.5E-06 1.5E-10 43.9 2.4 21 65-85 1-21 (52)
57 2dim_A Cell division cycle 5-l 98.0 7.8E-06 2.7E-10 45.5 3.5 24 62-85 4-27 (70)
58 1guu_A C-MYB, MYB proto-oncoge 97.9 4.5E-06 1.6E-10 43.8 2.2 21 65-85 1-21 (52)
59 2yum_A ZZZ3 protein, zinc fing 97.9 1E-05 3.5E-10 45.5 3.5 24 62-85 3-26 (75)
60 1ofc_X ISWI protein; nuclear p 97.9 4.2E-05 1.4E-09 53.6 7.1 40 15-55 111-150 (304)
61 1w0t_A Telomeric repeat bindin 97.8 8.2E-06 2.8E-10 43.1 2.3 20 66-85 1-20 (53)
62 2elk_A SPCC24B10.08C protein; 97.8 1.9E-05 6.4E-10 42.5 3.6 24 62-85 4-27 (58)
63 1ity_A TRF1; helix-turn-helix, 97.8 1.3E-05 4.5E-10 44.4 2.8 25 61-85 4-28 (69)
64 3sjm_A Telomeric repeat-bindin 97.8 1.4E-05 4.7E-10 44.0 2.3 21 65-85 9-29 (64)
65 2ltp_A Nuclear receptor corepr 96.7 1.3E-05 4.5E-10 46.7 0.0 27 59-85 8-34 (89)
66 1ign_A Protein (RAP1); RAP1,ye 97.5 0.0002 6.8E-09 48.7 5.5 26 36-62 173-198 (246)
67 3hm5_A DNA methyltransferase 1 97.4 0.00015 5.1E-09 42.7 3.3 31 51-85 18-48 (93)
68 4b4c_A Chromodomain-helicase-D 97.3 0.00033 1.1E-08 45.9 4.9 37 7-43 127-163 (211)
69 2yus_A SWI/SNF-related matrix- 97.3 0.00027 9.3E-09 40.3 3.5 22 64-85 15-36 (79)
70 2cqr_A RSGI RUH-043, DNAJ homo 97.2 0.00033 1.1E-08 39.4 3.4 23 63-85 14-36 (73)
71 1x58_A Hypothetical protein 49 97.2 0.00021 7.3E-09 39.1 2.2 21 65-85 6-26 (62)
72 1irz_A ARR10-B; helix-turn-hel 97.1 0.0021 7.2E-08 35.3 6.2 50 11-60 4-56 (64)
73 2juh_A Telomere binding protei 97.1 0.00032 1.1E-08 43.1 2.9 25 61-85 11-35 (121)
74 2aje_A Telomere repeat-binding 97.0 0.00038 1.3E-08 41.8 2.7 24 62-85 8-31 (105)
75 2xb0_X Chromo domain-containin 96.8 0.00093 3.2E-08 46.0 3.2 29 15-43 169-197 (270)
76 2roh_A RTBP1, telomere binding 96.7 0.0011 3.7E-08 40.8 2.9 22 64-85 28-49 (122)
77 1ofc_X ISWI protein; nuclear p 96.4 0.0063 2.1E-07 42.6 5.2 48 13-61 211-273 (304)
78 1fex_A TRF2-interacting telome 96.3 0.0033 1.1E-07 33.8 2.9 19 67-85 2-20 (59)
79 2cqq_A RSGI RUH-037, DNAJ homo 96.2 0.0057 2E-07 34.1 3.6 22 64-85 5-26 (72)
80 4b4c_A Chromodomain-helicase-D 96.1 0.017 5.9E-07 37.6 6.1 44 11-55 4-51 (211)
81 2y9y_A Imitation switch protei 96.1 0.017 5.9E-07 41.4 6.4 40 15-54 124-163 (374)
82 2xag_B REST corepressor 1; ami 95.7 0.0018 6.2E-08 47.8 0.0 43 15-59 190-232 (482)
83 2eqr_A N-COR1, N-COR, nuclear 95.3 0.015 5.2E-07 31.1 2.9 20 66-85 11-30 (61)
84 2y9y_A Imitation switch protei 93.9 0.12 4E-06 37.1 5.4 48 13-61 227-289 (374)
85 2rq5_A Protein jumonji; develo 92.9 0.095 3.2E-06 31.9 3.2 57 24-83 46-113 (121)
86 4iej_A DNA methyltransferase 1 92.4 0.15 5.3E-06 29.7 3.5 27 55-85 22-48 (93)
87 2yqk_A Arginine-glutamic acid 92.2 0.18 6.1E-06 27.0 3.4 23 63-85 5-27 (63)
88 1wgx_A KIAA1903 protein; MYB D 92.2 0.19 6.3E-06 28.1 3.5 20 66-85 7-26 (73)
89 2li6_A SWI/SNF chromatin-remod 91.9 0.19 6.6E-06 30.0 3.7 39 24-63 53-98 (116)
90 1ig6_A MRF-2, modulator recogn 90.5 0.33 1.1E-05 28.4 3.7 41 23-63 36-87 (107)
91 2jrz_A Histone demethylase jar 88.8 0.71 2.4E-05 27.6 4.3 40 24-63 44-93 (117)
92 2kk0_A AT-rich interactive dom 88.8 0.74 2.5E-05 28.5 4.5 56 24-79 68-136 (145)
93 2lm1_A Lysine-specific demethy 88.7 0.42 1.4E-05 27.9 3.2 41 23-63 47-97 (107)
94 1c20_A DEAD ringer protein; DN 88.6 0.79 2.7E-05 27.7 4.4 40 24-63 56-106 (128)
95 3i4p_A Transcriptional regulat 88.3 0.65 2.2E-05 28.7 4.0 44 20-65 3-46 (162)
96 2cxy_A BAF250B subunit, HBAF25 87.0 1.1 3.8E-05 26.9 4.4 40 24-63 55-104 (125)
97 2eqy_A RBP2 like, jumonji, at 85.3 1.3 4.5E-05 26.6 4.1 40 24-63 46-95 (122)
98 1kkx_A Transcription regulator 85.3 0.32 1.1E-05 29.5 1.3 39 24-63 52-97 (123)
99 2iw5_B Protein corest, REST co 84.7 0.53 1.8E-05 31.7 2.2 19 67-85 133-151 (235)
100 4eef_G F-HB80.4, designed hema 84.3 0.31 1.1E-05 27.3 0.8 19 67-85 20-38 (74)
101 2jxj_A Histone demethylase jar 83.7 0.85 2.9E-05 26.0 2.6 40 24-63 40-89 (96)
102 2p1m_A SKP1-like protein 1A; F 82.0 1.8 6.3E-05 26.9 3.9 35 38-80 119-153 (160)
103 2xb0_X Chromo domain-containin 81.7 2.7 9.1E-05 28.8 4.9 49 13-62 2-54 (270)
104 3v7d_A Suppressor of kinetocho 81.5 2.1 7.3E-05 26.9 4.1 34 38-79 127-160 (169)
105 2e1c_A Putative HTH-type trans 80.8 3.4 0.00012 25.7 4.9 45 19-65 26-70 (171)
106 2o8x_A Probable RNA polymerase 78.3 3.8 0.00013 21.0 3.9 41 17-61 16-56 (70)
107 2dbb_A Putative HTH-type trans 74.6 6.1 0.00021 23.6 4.6 41 20-62 9-49 (151)
108 1ku3_A Sigma factor SIGA; heli 74.5 5.3 0.00018 21.0 3.9 40 18-61 12-55 (73)
109 2ast_A S-phase kinase-associat 73.8 3 0.0001 25.8 3.0 56 17-80 94-154 (159)
110 2cyy_A Putative HTH-type trans 73.0 7.2 0.00025 23.3 4.6 42 20-63 7-48 (151)
111 2ia0_A Putative HTH-type trans 71.0 6.2 0.00021 24.5 4.1 43 19-63 16-58 (171)
112 2cg4_A Regulatory protein ASNC 70.3 7.7 0.00026 23.2 4.3 40 20-61 8-47 (152)
113 2p5v_A Transcriptional regulat 70.2 8 0.00027 23.4 4.4 42 20-63 10-51 (162)
114 2of5_H Leucine-rich repeat and 68.0 5.2 0.00018 23.6 3.1 24 22-46 13-36 (118)
115 2pn6_A ST1022, 150AA long hypo 67.0 7.4 0.00025 23.1 3.7 42 21-64 4-45 (150)
116 2yqf_A Ankyrin-1; death domain 65.2 11 0.00038 21.8 4.2 27 18-45 14-40 (111)
117 2cfx_A HTH-type transcriptiona 64.8 10 0.00035 22.5 4.1 42 20-63 5-46 (144)
118 2p7v_B Sigma-70, RNA polymeras 64.8 8.1 0.00028 19.9 3.2 25 35-61 26-50 (68)
119 1i1g_A Transcriptional regulat 64.1 12 0.00042 21.8 4.3 40 21-62 5-44 (141)
120 2o71_A Death domain-containing 64.0 8.1 0.00028 22.8 3.4 22 23-45 25-46 (115)
121 3cz6_A DNA-binding protein RAP 62.5 5.3 0.00018 25.5 2.4 17 10-26 110-126 (168)
122 3e7l_A Transcriptional regulat 62.4 14 0.00049 18.9 4.4 30 20-50 19-48 (63)
123 2of5_A Death domain-containing 61.2 7.8 0.00027 22.9 2.9 22 23-45 25-46 (114)
124 1wxp_A THO complex subunit 1; 56.1 13 0.00045 21.5 3.3 24 22-46 18-41 (110)
125 1ntc_A Protein (nitrogen regul 55.7 24 0.00082 19.4 4.6 30 20-50 51-80 (91)
126 3hug_A RNA polymerase sigma fa 55.3 20 0.00067 19.5 3.9 28 31-61 51-78 (92)
127 3cz6_A DNA-binding protein RAP 54.2 39 0.0013 21.5 6.0 56 23-79 65-126 (168)
128 2w25_A Probable transcriptiona 53.2 22 0.00074 21.1 4.1 41 21-63 8-48 (150)
129 1qgp_A Protein (double strande 52.3 26 0.00087 18.9 3.9 40 18-59 12-54 (77)
130 2k0m_A Uncharacterized protein 52.0 13 0.00045 21.7 2.8 36 48-83 15-50 (104)
131 1tty_A Sigma-A, RNA polymerase 50.5 26 0.0009 18.9 3.9 25 35-61 39-63 (87)
132 3h8k_B Autocrine motility fact 49.7 11 0.00038 16.9 1.8 10 17-26 1-10 (28)
133 2q1z_A RPOE, ECF SIGE; ECF sig 49.0 18 0.00063 21.6 3.3 25 35-61 152-176 (184)
134 1ich_A TNF-1, tumor necrosis f 48.5 18 0.00061 21.5 3.0 24 22-45 13-36 (112)
135 3eyi_A Z-DNA-binding protein 1 48.3 19 0.00065 19.8 2.9 38 17-55 7-44 (72)
136 1or7_A Sigma-24, RNA polymeras 46.1 29 0.001 20.8 4.0 25 35-61 157-181 (194)
137 1g2h_A Transcriptional regulat 45.9 20 0.00068 18.3 2.7 33 16-50 17-49 (61)
138 2hzd_A Transcriptional enhance 43.4 43 0.0015 18.8 5.0 28 13-40 5-32 (82)
139 1ngr_A P75 low affinity neurot 40.7 11 0.00037 21.0 1.1 22 19-46 12-33 (85)
140 1qbj_A Protein (double-strande 39.9 46 0.0016 18.2 4.5 41 18-60 8-51 (81)
141 2ib1_A Death domain containing 39.9 6.5 0.00022 22.3 0.1 26 19-46 5-30 (91)
142 3mzy_A RNA polymerase sigma-H 39.7 41 0.0014 19.3 3.8 25 35-61 125-149 (164)
143 1xsv_A Hypothetical UPF0122 pr 39.1 46 0.0016 19.1 3.8 35 23-60 31-65 (113)
144 1fad_A Protein (FADD protein); 38.4 18 0.00062 20.2 1.9 28 23-53 15-42 (99)
145 2lkq_A Immunoglobulin lambda-l 37.7 1.9 6.5E-05 18.7 -1.8 17 52-71 4-20 (26)
146 1rp3_A RNA polymerase sigma fa 37.4 44 0.0015 20.6 3.9 25 35-61 204-228 (239)
147 1x3u_A Transcriptional regulat 35.5 47 0.0016 17.0 3.8 41 17-62 17-57 (79)
148 3r8n_M 30S ribosomal protein S 35.3 37 0.0013 20.1 3.0 36 48-85 27-62 (114)
149 3b73_A PHIH1 repressor-like pr 34.7 68 0.0023 18.6 4.4 46 15-62 8-55 (111)
150 1dw9_A Cyanate lyase; cyanate 34.3 85 0.0029 19.6 5.1 49 23-81 16-64 (156)
151 1eto_A FIS, factor for inversi 34.1 65 0.0022 18.2 4.4 30 20-50 58-87 (98)
152 2jvw_A Uncharacterized protein 32.9 34 0.0011 19.5 2.4 50 22-79 18-69 (88)
153 1k78_A Paired box protein PAX5 32.7 75 0.0026 18.4 8.9 66 14-83 30-104 (149)
154 3c57_A Two component transcrip 31.2 68 0.0023 17.5 4.1 41 16-61 27-67 (95)
155 1s7o_A Hypothetical UPF0122 pr 30.9 78 0.0027 18.1 4.3 41 17-61 23-63 (113)
156 4ayb_F DNA-directed RNA polyme 30.1 57 0.002 19.0 3.2 64 15-85 45-110 (113)
157 1fse_A GERE; helix-turn-helix 28.5 62 0.0021 16.2 4.6 43 14-61 9-51 (74)
158 4d8o_A Ankyrin-2; ZU5, UPA, de 28.1 33 0.0011 25.9 2.3 24 22-46 498-521 (581)
159 1tc3_C Protein (TC3 transposas 28.0 48 0.0016 14.8 5.5 37 16-56 5-41 (51)
160 1u78_A TC3 transposase, transp 27.7 87 0.003 17.6 8.2 63 15-81 5-72 (141)
161 3ulq_B Transcriptional regulat 27.5 81 0.0028 17.2 4.6 46 12-62 25-70 (90)
162 1xn7_A Hypothetical protein YH 27.3 73 0.0025 17.2 3.2 31 23-55 5-35 (78)
163 2fm8_C Cell invasion protein S 27.1 27 0.00093 23.1 1.5 32 11-42 113-154 (240)
164 1pdn_C Protein (PRD paired); p 27.1 83 0.0028 17.2 6.2 65 15-83 16-89 (128)
165 1je8_A Nitrate/nitrite respons 26.1 80 0.0027 16.7 3.8 42 16-62 21-62 (82)
166 2ba3_A NIKA; dimer, bacterial 25.8 62 0.0021 15.6 2.5 20 15-34 20-39 (51)
167 2dn0_A Zinc fingers and homeob 24.9 83 0.0029 16.5 6.7 52 6-59 4-58 (76)
168 2gf5_A FADD protein; death dom 24.6 64 0.0022 20.3 2.9 26 20-46 96-121 (191)
169 1umq_A Photosynthetic apparatu 24.4 95 0.0032 16.9 5.6 32 18-50 39-70 (81)
170 2jn6_A Protein CGL2762, transp 24.3 92 0.0031 16.7 6.0 45 14-62 3-48 (97)
171 2guk_A Hypothetical protein PG 24.0 36 0.0012 20.5 1.5 27 52-80 73-100 (120)
172 3ezq_B Protein FADD; apoptosis 24.0 60 0.002 19.2 2.6 16 30-46 14-29 (122)
173 1hlv_A CENP-B, major centromer 23.8 1.1E+02 0.0036 17.3 8.1 34 13-46 4-37 (131)
174 2rnj_A Response regulator prot 23.6 94 0.0032 16.6 3.8 42 16-62 29-70 (91)
175 3bm3_A PSPGI restriction endon 21.4 13 0.00046 25.3 -0.8 12 51-62 161-172 (272)
176 2k27_A Paired box protein PAX- 21.3 1.3E+02 0.0046 17.5 7.8 64 15-83 24-97 (159)
177 1c4z_A E6AP, ubiquitin-protein 21.2 84 0.0029 21.8 3.2 60 16-82 232-292 (358)
178 1ojl_A Transcriptional regulat 21.0 54 0.0019 21.8 2.1 30 20-50 268-297 (304)
179 1wmg_A Netrin receptor UNC5H2; 20.5 33 0.0011 19.6 0.9 14 32-46 30-43 (103)
180 1bw5_A ISL-1HD, insulin gene e 20.3 98 0.0034 15.6 6.0 50 9-60 2-54 (66)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=4.4e-30 Score=160.53 Aligned_cols=81 Identities=36% Similarity=0.635 Sum_probs=73.1
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHH
Q 041165 4 QPCCDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHS 83 (85)
Q Consensus 4 ~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~ 83 (85)
.....+|++++|+||+|||++|+++|+.||.++|..||..|++ ||+.||++||.++|+|.+++++||+|||.+|+++|+
T Consensus 17 w~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~ 95 (128)
T 1h8a_C 17 WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 95 (128)
T ss_dssp -----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHH
Confidence 3445779999999999999999999999998789999999994 999999999999999999999999999999999998
Q ss_pred hC
Q 041165 84 LL 85 (85)
Q Consensus 84 ~~ 85 (85)
+|
T Consensus 96 ~~ 97 (128)
T 1h8a_C 96 RL 97 (128)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.96 E-value=6.3e-30 Score=154.97 Aligned_cols=74 Identities=39% Similarity=0.759 Sum_probs=70.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 11 GLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.+++|+||+|||++|+.+|..||..+|..||..|++ ||+.||++||.++|+|.+++++||+|||.+|+++|++|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~ 74 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 74 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999998799999999984 99999999999999999999999999999999999864
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.96 E-value=1e-29 Score=154.81 Aligned_cols=71 Identities=28% Similarity=0.510 Sum_probs=68.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
||+||+|||++|+.+|..||..+|..||..|++ ||+.||++||.++|+|.+++++||+|||.+|+++|.+|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~ 71 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEY 71 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHh
Confidence 689999999999999999998899999999994 99999999999999999999999999999999999876
No 4
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=3.8e-30 Score=146.46 Aligned_cols=67 Identities=24% Similarity=0.550 Sum_probs=64.3
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHH
Q 041165 8 DKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEE 75 (85)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd 75 (85)
..|.+++|+||+|||++|+++|..||.++|..||..|+ +||+.||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 56889999999999999999999999889999999999 49999999999999999999999999997
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.96 E-value=2e-29 Score=157.40 Aligned_cols=76 Identities=28% Similarity=0.500 Sum_probs=71.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 8 DKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.++..++|+||+|||++|+.+|..||. +|..||..|++ ||+.||++||.++|+|.+++++||+|||.+|+++|++|
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY 80 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999995 99999999984 99999999999999999999999999999999999875
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.96 E-value=4.2e-29 Score=156.78 Aligned_cols=71 Identities=31% Similarity=0.602 Sum_probs=68.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
||+||+|||++|+.+|..||.++|..||..|++ ||+.||++||.++|+|.+++++||+|||.+|+++|.+|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~ 72 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKL 72 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999998899999999984 99999999999999999999999999999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=9.1e-28 Score=154.59 Aligned_cols=78 Identities=37% Similarity=0.699 Sum_probs=74.0
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
..+|.+++|+||+|||+.|+.+|+.||..+|..||..|++ ||+.||++||.++|+|.+++++||++||.+|+++|++|
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 4679999999999999999999999997789999999984 99999999999999999999999999999999999864
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.93 E-value=1.8e-27 Score=153.24 Aligned_cols=74 Identities=31% Similarity=0.657 Sum_probs=32.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 11 GLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.+++++||+|||++|+.+|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||..|+++|++|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~ 76 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKY 76 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHh
Confidence 37899999999999999999999889999999998 499999999999999999999999999999999999864
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=1.8e-24 Score=119.56 Aligned_cols=57 Identities=23% Similarity=0.463 Sum_probs=54.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCC
Q 041165 9 KVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLK 66 (85)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~ 66 (85)
.|.+++++||+|||++|+++|.+||.++|..||..|++ ||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 58899999999999999999999998799999999995 9999999999999999875
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.90 E-value=4.5e-24 Score=114.94 Aligned_cols=52 Identities=42% Similarity=0.862 Sum_probs=49.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCC
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPD 64 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~ 64 (85)
+++|+||+|||+.|+++|..||..+|..||..|++ ||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999997789999999984 99999999999999984
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.89 E-value=8.5e-24 Score=113.82 Aligned_cols=52 Identities=33% Similarity=0.694 Sum_probs=47.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCC
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPD 64 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~ 64 (85)
+++|+||+|||++|+++|..||..+|..||..|++ ||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999997799999999994 99999999999999984
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.89 E-value=1.2e-23 Score=119.24 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=58.5
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhC--CCCchhhHHHHHHhhhCCCCCCCCCC
Q 041165 8 DKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAG--LLRCGKSCRLRWINYLRPDLKRGAFT 71 (85)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rt~~qcr~Rw~~~l~~~~~~~~wt 71 (85)
.++..++++||+|||+.|+++|..||.++|..||..|+ + ||+.||++||.++|+|.+.+++.+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46788999999999999999999999889999999998 6 999999999999999999987754
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=2.6e-22 Score=111.05 Aligned_cols=55 Identities=16% Similarity=0.421 Sum_probs=51.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCC
Q 041165 9 KVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPD 64 (85)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~ 64 (85)
.+.+.+++||+|||++|+++|..||.++|..||..|++ ||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 47899999999999999999999998899999999995 99999999999999864
No 14
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.87 E-value=4.2e-22 Score=123.81 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=68.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhh----CCCCchhhHHHHHHhhh-----CCCCCCCCCCHHH-HHHH
Q 041165 9 KVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLA----GLLRCGKSCRLRWINYL-----RPDLKRGAFTEDE-EDQI 78 (85)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~~~~~~~~wt~eE-d~~L 78 (85)
+...++++||+|||+.|+++|++||.++|..|+..+ + +||+.||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 356779999999999999999999988999999974 5 499999999999999 8999999999999 7888
Q ss_pred HHHHHh
Q 041165 79 IQLHSL 84 (85)
Q Consensus 79 ~~~v~~ 84 (85)
+++++.
T Consensus 105 ~~~h~~ 110 (122)
T 2roh_A 105 LAAQAY 110 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.87 E-value=1.5e-22 Score=113.48 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=49.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhC-CCCchhhHHHHHHhhhCCCCC
Q 041165 10 VGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAG-LLRCGKSCRLRWINYLRPDLK 66 (85)
Q Consensus 10 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~~Rt~~qcr~Rw~~~l~~~~~ 66 (85)
...+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 346899999999999999999999889999999854 139999999999999998764
No 16
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.87 E-value=3.6e-22 Score=123.92 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=69.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhh----CCCCchhhHHHHHHhhhC-----CCCCCC-CCCHHHHHH
Q 041165 8 DKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLA----GLLRCGKSCRLRWINYLR-----PDLKRG-AFTEDEEDQ 77 (85)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l~-----~~~~~~-~wt~eEd~~ 77 (85)
.++..++++||+|||+.|+++|.+||.++|..|+..+ + +||+.||++||++++. |.++++ +|+++|+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4578889999999999999999999988999999985 5 4999999999999998 999998 999999999
Q ss_pred HHHHHHh
Q 041165 78 IIQLHSL 84 (85)
Q Consensus 78 L~~~v~~ 84 (85)
|+.+++.
T Consensus 90 v~~~h~~ 96 (121)
T 2juh_A 90 VLAAHAY 96 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9e-23 Score=114.66 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=53.8
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGA 69 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~ 69 (85)
+..|.+++++||+|||++|+++|..+| .+|..||.++| ||+.||++||.++|+|.+++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~~~g--Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhcccC--cCHHHHHHHHHHHhChHhcCCC
Confidence 468999999999999999999999999 59999999444 9999999999999998766543
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.85 E-value=9.2e-22 Score=106.30 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=46.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhC--CCCchhhHHHHHHhhhC
Q 041165 13 KRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAG--LLRCGKSCRLRWINYLR 62 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~--~~Rt~~qcr~Rw~~~l~ 62 (85)
++|+||+|||+.|+++|..||.++|..||..|+ + ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999998 6 999999999999975
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=112.08 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=55.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCC
Q 041165 8 DKVGLKRGPWTIEEDHKLMSFILNNGI-----HCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGA 69 (85)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~ 69 (85)
.+|.+.+++||+|||++|+++|..||. .+|..||..|++ ||+.||++||+++|.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 368999999999999999999999996 789999999995 9999999999999998776653
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.5e-21 Score=105.87 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=48.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 9 KVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
...+.+++||+|||++|+++|.+||.++|..||..|+++||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 34577899999999999999999998899999999993499999999999875
No 21
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.84 E-value=2.6e-21 Score=110.42 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=53.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKR 67 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~ 67 (85)
+..|.+++++||+|||++|+++|..|| .+|..||..|++ ||+.||++||+++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999 599999999995 99999999999999776554
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=107.93 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCC
Q 041165 3 RQPCCDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLK 66 (85)
Q Consensus 3 r~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~ 66 (85)
|......|++++|+||+|||++|+++|.++| .+|+.||+.| + ||+.||++||+. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-G-RSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence 3345678999999999999999999999999 6799999999 4 999999999985 444443
No 23
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.80 E-value=9.8e-21 Score=118.54 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=60.1
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHH
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTED 73 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~e 73 (85)
...|.+++|+||+|||+.|+++|..|| .+|..||..|++ ||+.||++||+++|++.+..++|+.+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 467999999999999999999999999 799999999995 99999999999999999988887753
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.78 E-value=5.8e-19 Score=103.29 Aligned_cols=68 Identities=22% Similarity=0.398 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhh----hCCCCchhhHHHHHHhhh-----CCCCCC-CCCCHHHHHHHHHHHH
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKL----AGLLRCGKSCRLRWINYL-----RPDLKR-GAFTEDEEDQIIQLHS 83 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qcr~Rw~~~l-----~~~~~~-~~wt~eEd~~L~~~v~ 83 (85)
++||+|||+.|+++|.+||.++|+.|+.. ++ +||+.||++||++++ +|.+++ .|.+++....++.+++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998899999996 67 499999999999988 676665 4788888888888875
No 25
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=2.3e-19 Score=121.79 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=64.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCC-----CchhhhhhhCCCCchhhHHHHHHhhhCCCCC-----------------
Q 041165 9 KVGLKRGPWTIEEDHKLMSFILNNGIH-----CWRMVPKLAGLLRCGKSCRLRWINYLRPDLK----------------- 66 (85)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~-----~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~----------------- 66 (85)
.+.+++++||+|||+.|+++|.++|.. .|..||.+|+| ||+.|||+||+++|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 457889999999999999999999853 29999999995 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHh
Q 041165 67 ------------RGAFTEDEEDQIIQLHSL 84 (85)
Q Consensus 67 ------------~~~wt~eEd~~L~~~v~~ 84 (85)
+..||.+||..|+..+.+
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred CceeeeccCccccCccchhccHHHHHHHHH
Confidence 789999999999998865
No 26
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.77 E-value=7.1e-19 Score=106.83 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=64.1
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhh----CCCCchhhHHHHHHhhh-----CCCCCCCCCCHHHHHH
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLA----GLLRCGKSCRLRWINYL-----RPDLKRGAFTEDEEDQ 77 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rt~~qcr~Rw~~~l-----~~~~~~~~wt~eEd~~ 77 (85)
..++..++++||+|||+.|+++|.+||.++|..|+..+ + +||+.||++||++++ +|.++++.-+++|-..
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 35578899999999999999999999988999999975 5 499999999999999 7899988877777655
Q ss_pred -HHHHHH
Q 041165 78 -IIQLHS 83 (85)
Q Consensus 78 -L~~~v~ 83 (85)
+++|++
T Consensus 85 rv~~~~~ 91 (105)
T 2aje_A 85 RVLNAHG 91 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 666654
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.75 E-value=1.6e-18 Score=104.56 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=50.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPD 64 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~ 64 (85)
...|.+++|+||+|||+.|+.+|..|| .+|..||..|++ ||+.||++||+.++...
T Consensus 49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 49 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPG-RTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTT-CCHHHHHHHHHHHTC--
T ss_pred ccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHHHhcc
Confidence 467999999999999999999999999 799999999995 99999999999988753
No 28
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=99.87 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=48.5
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhh
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINY 60 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 60 (85)
+.++...+++||+|||++|+++|..|| ++|..||.+||+ ||+.||++||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 456677899999999999999999999 899999999994 9999999999997
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.73 E-value=4.6e-18 Score=97.32 Aligned_cols=56 Identities=14% Similarity=0.348 Sum_probs=50.6
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNG---IHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
..++.+.+++||++||++|+.++..|| ..+|..||.+||| ||..||++||.+++..
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVSG 69 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHSS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHHc
Confidence 466788999999999999999999999 4689999999995 9999999999998763
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.73 E-value=6.5e-18 Score=102.44 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=51.0
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
...|.+++|+||+|||+.|+.+|..|| .+|..||..|++ ||+.||++||..++.+
T Consensus 46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 46 YINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKN-RSDNNIRNRWMMIARH 100 (107)
T ss_dssp HSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHH
T ss_pred HHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCC-CCHHHHHHHHHHHHhh
Confidence 467999999999999999999999999 699999999995 9999999999998764
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-19 Score=105.56 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=51.0
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
...|.+.+|+||+|||++|+++|..|| .+|..||..|++ ||+.||++||+++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 466899999999999999999999999 589999999995 9999999999999864
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.72 E-value=1e-17 Score=104.29 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=51.3
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
...|.+++|+||+|||+.|+++|.+|| .+|..||..|+| ||+.||++||..++..
T Consensus 72 ~l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 72 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPG-RTDNAVKNHWNSTMRR 126 (128)
T ss_dssp TTCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTT-CCHHHHHHHHHTTTTC
T ss_pred hcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCC-CCHHHHHHHHHHHHhc
Confidence 467999999999999999999999999 799999999985 9999999999998865
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.71 E-value=4.4e-18 Score=105.84 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=50.8
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
...|.+++|+||+|||++|+.+|.+|| .+|..||..|++ ||+.||++||..+++.
T Consensus 55 ~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 55 YLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPG-RTDIHIKNRWVTISNK 109 (126)
T ss_dssp HTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTT-CCHHHHHHHHHHHHHH
T ss_pred hcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999 799999999995 9999999999998753
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.56 E-value=3.1e-15 Score=89.05 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=43.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhC---CCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 12 LKRGPWTIEEDHKLMSFILNNG---IHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
..+++||+|||++|..++..|| .+.|..||..|+| ||..||++||.+++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3468999999999999999997 4679999999995 99999999999975
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=5.7e-14 Score=77.67 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=44.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhh---hhCCCCchhhHHHHHHhhhCC
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPK---LAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~---~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
-.+.+||+|||+.|++.|++||. +|..|+. ++. +||..++++||++....
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 47889999999999999999995 9999994 566 49999999999998753
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=7.7e-13 Score=72.97 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=45.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 8 DKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
.+..-..++||+||++++.+++..|| .+|..||.+|++ ||..||..+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 44455678999999999999999999 799999999995 99999999997654
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=1.1e-12 Score=74.62 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=46.0
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhC---CCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 10 VGLKRGPWTIEEDHKLMSFILNNG---IHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 10 ~~~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
++.+.+.||.|||++|..++..|+ .+.|..||..+| ||..||+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence 456788999999999999999997 357999999996 9999999999987654
No 38
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=99.17 E-value=3e-11 Score=66.25 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCchhhhh-hhCCCCchhhHHHHHHhhhC
Q 041165 14 RGPWTIEEDHKLMSFILNN--------GIHCWRMVPK-LAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
|.+||+|||+.|++.|..+ |..-|+.+++ .++ ++|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6799999999999999999 4445999999 688 5999999999999875
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.16 E-value=5.8e-11 Score=80.09 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=45.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
-..++||.||+..+++++..|| ++|..||+.+| +||..||+++|+++...
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4577999999999999999999 79999999999 49999999999988753
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.12 E-value=1.7e-10 Score=65.71 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=43.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 14 RGPWTIEEDHKLMSFILNNGI---HCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
...||.+|+++|..++..|+. ..|..||..+|+ ||..+|+.||..++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhc
Confidence 467999999999999999974 469999999996 9999999999987643
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.90 E-value=6.2e-10 Score=63.37 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 54 RLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 54 r~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
--||.++|+|.+++++||+|||++|+++|++|
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~ 41 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKH 41 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHH
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999864
No 42
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.78 E-value=1.2e-08 Score=60.39 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=44.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhC----CCCchhhHHHHHHhhhC
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAG----LLRCGKSCRLRWINYLR 62 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l~ 62 (85)
+..++||.||+..|++++.+|+ -.|..|+..+. .+||..++++||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 3448999999999999999999 79999999983 24999999999998754
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3e-08 Score=54.70 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=45.3
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhh-hhCCCCchhhHHHHHHhh
Q 041165 8 DKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPK-LAGLLRCGKSCRLRWINY 60 (85)
Q Consensus 8 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~ 60 (85)
..|.+...+||+||-++..+++..|| .+|..|+. .++ +||..||..-|..-
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence 45788889999999999999999999 79999998 588 59999999888653
No 44
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.72 E-value=6.6e-08 Score=56.82 Aligned_cols=45 Identities=18% Similarity=0.412 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 16 PWTIEEDHKLMSFILNNGI--HCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
-||.|||..++..+++.|. .-|..||..++ ||++.|+++||+.++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 4999999999999999985 46999999999 699999999999865
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.67 E-value=5.3e-09 Score=59.36 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCchhhhhhhCCCCchhhHHHHHH
Q 041165 14 RGPWTIEEDHKLMSFILNNGI---HCWRMVPKLAGLLRCGKSCRLRWI 58 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rt~~qcr~Rw~ 58 (85)
.++||.+|++.|..++..|+. ..|.+||..+|| ||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 567999999999999999974 369999999995 99999999884
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.65 E-value=4.6e-08 Score=72.05 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=43.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
....+||.+|-..+++++.+|| .+|..||..+| +||..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3467999999999999999999 79999999999 599999999998764
No 47
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=24.4
Q ss_pred hhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 60 YLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 60 ~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+|+|.+++++||+|||.+|+++|++|
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~ 27 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLM 27 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 69999999999999999999999875
No 48
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=98.43 E-value=1.3e-07 Score=54.68 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=40.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCchhhhhhh---CCCCchhhHHHHHHhhh
Q 041165 13 KRGPWTIEEDHKLMSFILNNGI---------HCWRMVPKLA---GLLRCGKSCRLRWINYL 61 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~---~~~Rt~~qcr~Rw~~~l 61 (85)
+...||.+|...|+.+...... .-|..||..| |.+||+.||+++|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999976321 2599999984 56799999999999875
No 49
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.77 E-value=3.4e-08 Score=55.18 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 15 GPWTIEEDHKLMSFILNNGI--HCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
-.||.|||..++..+++.|. .-|..||..++ ||+.|+.+||..++.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK 62 (70)
Confidence 35999999999999999985 36999999995 999999999998764
No 50
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.35 E-value=7.8e-07 Score=49.94 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=40.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCchhhhh-hhCCCCchhhHHHHHHhh
Q 041165 13 KRGPWTIEEDHKLMSFILNNGIHCWRMVPK-LAGLLRCGKSCRLRWINY 60 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qcr~Rw~~~ 60 (85)
...+||++|-++..+++..|| .+|..|+. .++ +||..||..-|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHhh
Confidence 346899999999999999999 79999999 589 59999999888753
No 51
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.34 E-value=7.4e-07 Score=52.70 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=40.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhh
Q 041165 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINY 60 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 60 (85)
...||+||.+.+.++...|| .+|..||..++ +||..||-.-|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhcc
Confidence 46799999999999999999 89999999999 59999999988643
No 52
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=1.2e-06 Score=47.47 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 62 RPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+|.+++++||+|||.+|+++|++|
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~ 26 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQF 26 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh
Confidence 578899999999999999999876
No 53
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.10 E-value=2.7e-06 Score=47.68 Aligned_cols=25 Identities=12% Similarity=-0.062 Sum_probs=23.1
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 61 LRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 61 l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.+|.+++++||+|||.+|+++|.+|
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~ 27 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKF 27 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 54
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.02 E-value=5e-06 Score=45.06 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 62 RPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.+.+.+++||+|||.+|+++|++|
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~ 26 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDC 26 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999876
No 55
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.02 E-value=1.3e-05 Score=47.22 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=43.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhC----CCCchhhHHHHHHhhhC
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAG----LLRCGKSCRLRWINYLR 62 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rt~~qcr~Rw~~~l~ 62 (85)
++...||.||...|+++|+.|. -.|..|+.... .+||-.+.++||..+..
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 4457899999999999999999 69999998853 25999999999998754
No 56
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.95 E-value=4.5e-06 Score=43.85 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhC
Q 041165 65 LKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 65 ~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+++++||+|||.+|+++|++|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~ 21 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKY 21 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999864
No 57
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=7.8e-06 Score=45.45 Aligned_cols=24 Identities=13% Similarity=0.136 Sum_probs=21.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 62 RPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.|.+++++||+|||.+|+++|.+|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~ 27 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKY 27 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999876
No 58
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.93 E-value=4.5e-06 Score=43.79 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhC
Q 041165 65 LKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 65 ~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+++++||+|||.+|+++|++|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~ 21 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQN 21 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999874
No 59
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1e-05 Score=45.46 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 62 RPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+|.+.+++||+|||.+|+++|.+|
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~ 26 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKY 26 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh
Confidence 578889999999999999999876
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.89 E-value=4.2e-05 Score=53.57 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHH
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRL 55 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~ 55 (85)
+.||..+...++.++..||..+|..||..|++ +|...++.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~ 150 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIE 150 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHH
Confidence 46999999999999999999999999999984 88887753
No 61
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.85 E-value=8.2e-06 Score=43.05 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHHHHHHHHhC
Q 041165 66 KRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~ 85 (85)
++++||+|||..|+++|++|
T Consensus 1 kr~~WT~eEd~~L~~~v~~~ 20 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKY 20 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999875
No 62
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.83 E-value=1.9e-05 Score=42.52 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=20.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 62 RPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+..+.+++||++||.+|+++|++|
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~ 27 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETL 27 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999876
No 63
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.80 E-value=1.3e-05 Score=44.43 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=21.8
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 61 LRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 61 l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.++...+++||+|||..|+++|++|
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~ 28 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKY 28 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567789999999999999999875
No 64
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.76 E-value=1.4e-05 Score=44.02 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=18.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhC
Q 041165 65 LKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 65 ~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.++++||+|||++|+++|++|
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~ 29 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKY 29 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcc
Confidence 468899999999999999875
No 65
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.66 E-value=1.3e-05 Score=46.71 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=24.0
Q ss_pred hhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 59 NYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 59 ~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
..++|.+.+++||+|||.+|+++|.+|
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~ 34 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEH 34 (89)
Confidence 356789999999999999999999875
No 66
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.50 E-value=0.0002 Score=48.70 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=23.7
Q ss_pred CchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 36 CWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 36 ~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
-|+.||+.++ +||..+.|+||..+|.
T Consensus 173 ~fk~ia~~~P-~HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 173 FFKHFAEEHA-AHTENAWRDRFRKFLL 198 (246)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHTHH
T ss_pred HHHHHHHHCC-CCChhhHHHHHHHHHh
Confidence 5999999999 5999999999998874
No 67
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.37 E-value=0.00015 Score=42.74 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=27.2
Q ss_pred hhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 51 KSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 51 ~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.=+.++|.++|.+ ++||.||+..|++|+.+|
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~f 48 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRF 48 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHh
Confidence 3467999999976 899999999999999876
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.32 E-value=0.00033 Score=45.89 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCchhhhhh
Q 041165 7 CDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKL 43 (85)
Q Consensus 7 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 43 (85)
..++.-....||.+||..|+..|.+||.++|..|-.-
T Consensus 127 ~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 127 HTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3344444557999999999999999999999988764
No 69
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.26 E-value=0.00027 Score=40.28 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhC
Q 041165 64 DLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 64 ~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
...+++||+|||.+|+++|++|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~ 36 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMY 36 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHS
T ss_pred cccCCCcCHHHHHHHHHHHHHh
Confidence 3457899999999999999876
No 70
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.20 E-value=0.00033 Score=39.41 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=20.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhC
Q 041165 63 PDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 63 ~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+.+.+++||.+||.+|+++++.|
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~ 36 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQY 36 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHc
Confidence 35678899999999999999876
No 71
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.16 E-value=0.00021 Score=39.12 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhC
Q 041165 65 LKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 65 ~~~~~wt~eEd~~L~~~v~~~ 85 (85)
-++.+||+|||..|++.|++|
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~ 26 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTM 26 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999875
No 72
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.15 E-value=0.0021 Score=35.32 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=40.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC--chhhhhhhCC-CCchhhHHHHHHhh
Q 041165 11 GLKRGPWTIEEDHKLMSFILNNGIHC--WRMVPKLAGL-LRCGKSCRLRWINY 60 (85)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~~~-~Rt~~qcr~Rw~~~ 60 (85)
.-.+-.||+|..+..+++|...|... ++.|.+.|+. +-|..+++.+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44577899999999999999999422 7899998773 26899998887765
No 73
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.11 E-value=0.00032 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 61 LRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 61 l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+.+...+++||+|||..|+++|++|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~ 35 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHL 35 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4556788999999999999999875
No 74
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.04 E-value=0.00038 Score=41.77 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 62 RPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 62 ~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
.+..++++||+|||..|++.|++|
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~ 31 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKL 31 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999999875
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.77 E-value=0.00093 Score=46.04 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhh
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKL 43 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 43 (85)
..|+.+||..|+..|.+||.++|..|-.-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45999999999999999999999999754
No 76
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.72 E-value=0.0011 Score=40.77 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhC
Q 041165 64 DLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 64 ~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
...+++||+|||+.|+++|++|
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~ 49 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHL 49 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999875
No 77
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.35 E-value=0.0063 Score=42.57 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=40.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCchhhhhh------------hCCCCchhhHHHHHHhhh
Q 041165 13 KRGPWTIEEDHKLMSFILNNGI---HCWRMVPKL------------AGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~------------~~~~Rt~~qcr~Rw~~~l 61 (85)
+...||.+||..|+-++.+||. ++|..|... +- .||+.++..|=..++
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~k-SRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIK-SRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHh-cCCHHHHHHHHHHHH
Confidence 5668999999999999999999 999999632 34 499999988866655
No 78
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.32 E-value=0.0033 Score=33.84 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 041165 67 RGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 67 ~~~wt~eEd~~L~~~v~~~ 85 (85)
+.+||+|||+.|++.|.+|
T Consensus 2 R~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999865
No 79
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.20 E-value=0.0057 Score=34.15 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=18.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhC
Q 041165 64 DLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 64 ~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
....++||.||+++|.++++.|
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~ 26 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKF 26 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHC
Confidence 3457899999999999999876
No 80
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.10 E-value=0.017 Score=37.56 Aligned_cols=44 Identities=7% Similarity=-0.027 Sum_probs=31.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhC--CCCchhhhhh--hCCCCchhhHHH
Q 041165 11 GLKRGPWTIEEDHKLMSFILNNG--IHCWRMVPKL--AGLLRCGKSCRL 55 (85)
Q Consensus 11 ~~~kg~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--~~~~Rt~~qcr~ 55 (85)
.-....||..|-..|+.++.+|| ...|..|+.. +. ++|...++.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~ 51 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRR 51 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHH
Confidence 34457899999999999999999 4679999865 44 266665543
No 81
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.07 E-value=0.017 Score=41.40 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHH
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCR 54 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr 54 (85)
+.||.-+=..++.++..||..+-..||..|+++.|...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~ 163 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR 163 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH
Confidence 4699999999999999999989999999997338877776
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.69 E-value=0.0018 Score=47.81 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHh
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWIN 59 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~ 59 (85)
-.||++|...+.+.+..|| .+|..|+.+++ +|+..+|-..|+.
T Consensus 190 d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp-~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHG-KTFHRIQQMLP-DKSIASLVKFYYS 232 (482)
T ss_dssp ---------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcC-ccHHHHHHHcC-CCCHHHHHHHhcc
Confidence 4799999999999999999 89999999999 5999999876543
No 83
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.28 E-value=0.015 Score=31.13 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHHHHHHhC
Q 041165 66 KRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~ 85 (85)
..++||++|+.++++++..|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~ 30 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQH 30 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 35799999999999999875
No 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.87 E-value=0.12 Score=37.14 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=39.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCchhhhhh------------hCCCCchhhHHHHHHhhh
Q 041165 13 KRGPWTIEEDHKLMSFILNNGI---HCWRMVPKL------------AGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~------------~~~~Rt~~qcr~Rw~~~l 61 (85)
++..||.+||..|+-++.+||. ++|..|-.. +- .||+..+..|=..++
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~k-SRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFR-SRTPVELARRGNTLL 289 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHh-cCCHHHHHHHHHHHH
Confidence 4557999999999999999999 899999443 23 499999888866554
No 85
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=92.93 E-value=0.095 Score=31.88 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCCc----hhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHH
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLRC----GKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHS 83 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~ 83 (85)
+|..+|...|- +.|..||..||...+ +...+..|.++|.| ....+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHHHHHH
Confidence 44555555552 469999999875432 35779999999875 23488888888877654
No 86
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.37 E-value=0.15 Score=29.73 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.1
Q ss_pred HHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 55 LRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 55 ~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+.|..+|.. ..||.||...|++++++|
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~f 48 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRF 48 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHc
Confidence 557777753 689999999999999875
No 87
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.23 E-value=0.18 Score=27.04 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhC
Q 041165 63 PDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 63 ~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
|.+...+||+||-.+..+++..|
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~y 27 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQY 27 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHT
T ss_pred CCcCCCCcCHHHHHHHHHHHHHh
Confidence 56777899999999999988765
No 88
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.16 E-value=0.19 Score=28.08 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHhC
Q 041165 66 KRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 66 ~~~~wt~eEd~~L~~~v~~~ 85 (85)
...+||.+|+++|.++...|
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~ 26 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASL 26 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHC
Confidence 35689999999999988754
No 89
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.19 Score=30.02 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
.|..+|...|. +.|..||..||. -.+.+++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 56777777763 479999999996 5588999999999865
No 90
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=90.49 E-value=0.33 Score=28.44 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCC-------CCchhhhhhhCCCC----chhhHHHHHHhhhCC
Q 041165 23 HKLMSFILNNGI-------HCWRMVPKLAGLLR----CGKSCRLRWINYLRP 63 (85)
Q Consensus 23 ~~L~~~v~~~g~-------~~W~~Ia~~~~~~R----t~~qcr~Rw~~~l~~ 63 (85)
-.|..+|...|. +.|..||..||... .+.+++..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 356677776652 47999999988533 246889999999875
No 91
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=88.83 E-value=0.71 Score=27.55 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCCc---hhhHHHHHHhhhCC
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLRC---GKSCRLRWINYLRP 63 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 63 (85)
+|..+|...|. +.|..||..||...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777763 479999999885332 56788889888754
No 92
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=88.75 E-value=0.74 Score=28.54 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=38.2
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCC----chhhHHHHHHhhhCC--CCCCCCCCHHHHHHHH
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLR----CGKSCRLRWINYLRP--DLKRGAFTEDEEDQII 79 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~R----t~~qcr~Rw~~~l~~--~~~~~~wt~eEd~~L~ 79 (85)
+|..+|...|. +.|..||..||... .+.+++..|.++|.| ...++.=+++|-+.-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 46666766653 47999999988533 246789999999987 3345666666654433
No 93
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=88.72 E-value=0.42 Score=27.93 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCC-------CCchhhhhhhCCCCc---hhhHHHHHHhhhCC
Q 041165 23 HKLMSFILNNGI-------HCWRMVPKLAGLLRC---GKSCRLRWINYLRP 63 (85)
Q Consensus 23 ~~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 63 (85)
-.|..+|...|. +.|..||..||...+ +.+.+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 356777777763 469999999985332 46788889888754
No 94
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=88.56 E-value=0.79 Score=27.71 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCCc----hhhHHHHHHhhhCC
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLRC----GKSCRLRWINYLRP 63 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt----~~qcr~Rw~~~l~~ 63 (85)
.|..+|...|. +.|..||..||...+ +.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 479999999885332 46789999999866
No 95
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=88.29 E-value=0.65 Score=28.69 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCC
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDL 65 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~ 65 (85)
+-|.+|+.+.+..|.-.+..||+.+| -|...|+.|........+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 45889999999999889999999999 899999999988765443
No 96
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=86.96 E-value=1.1 Score=26.94 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCCc---hhhHHHHHHhhhCC
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLRC---GKSCRLRWINYLRP 63 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 63 (85)
+|..+|...|- +.|..||..||...+ +.+++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777663 479999999985432 45788889888754
No 97
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.35 E-value=1.3 Score=26.56 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCCc---hhhHHHHHHhhhCC
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLRC---GKSCRLRWINYLRP 63 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt---~~qcr~Rw~~~l~~ 63 (85)
+|..+|...|. +.|..|+..||...+ +.+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777763 479999999885332 35778888888744
No 98
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=85.32 E-value=0.32 Score=29.50 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
+|..+|...|- +.|..||..||. -.+.+.+..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCC-ChHHHHHHHHHHHHHH
Confidence 45666665552 469999999996 4488899999998854
No 99
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=84.73 E-value=0.53 Score=31.73 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 041165 67 RGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 67 ~~~wt~eEd~~L~~~v~~~ 85 (85)
.++||+||+.++++++..|
T Consensus 133 s~~WTeEE~~lFleAl~kY 151 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKY 151 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 5689999999999998865
No 100
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=84.28 E-value=0.31 Score=27.30 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 041165 67 RGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 67 ~~~wt~eEd~~L~~~v~~~ 85 (85)
.++||.+|+++|..+...|
T Consensus 20 s~~WT~eE~K~FE~ALa~y 38 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFT 38 (74)
T ss_dssp --CCCTTHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHHHHHHC
Confidence 4589999999999987765
No 101
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=83.73 E-value=0.85 Score=26.05 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHHHHHHhCC-------CCchhhhhhhCCCC---chhhHHHHHHhhhCC
Q 041165 24 KLMSFILNNGI-------HCWRMVPKLAGLLR---CGKSCRLRWINYLRP 63 (85)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Ia~~~~~~R---t~~qcr~Rw~~~l~~ 63 (85)
.|..+|...|- +.|..|+..||... .+.+++..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666666642 47999999988533 245778888887753
No 102
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=82.02 E-value=1.8 Score=26.87 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=26.6
Q ss_pred hhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHH
Q 041165 38 RMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQ 80 (85)
Q Consensus 38 ~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~ 80 (85)
..||..+.| +|+.+||.-|. + ...||+||+..|.+
T Consensus 119 ~~vA~~ikg-kt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKG-KTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTT-CCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 577888875 99999998762 2 23599999987754
No 103
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.69 E-value=2.7 Score=28.76 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=39.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC--CCchhhhhh--hCCCCchhhHHHHHHhhhC
Q 041165 13 KRGPWTIEEDHKLMSFILNNGI--HCWRMVPKL--AGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~--~~W~~Ia~~--~~~~Rt~~qcr~Rw~~~l~ 62 (85)
.+++||.-|-..|++++.+||. ..|..|+.. +. .++...++.-+..+++
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~-~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGTLP-VKSFEKYGETYDEMME 54 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSC-CCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc-cCCHHHHHHHHHHHHH
Confidence 4789999999999999999995 469999766 55 4888877777766553
No 104
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=81.48 E-value=2.1 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.6
Q ss_pred hhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHH
Q 041165 38 RMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQII 79 (85)
Q Consensus 38 ~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~ 79 (85)
..||..+.| +|+.++|.-|. +. ..||+||+..+.
T Consensus 127 ~~vA~~ikg-ktpeeiR~~f~------I~-nd~t~eEe~~ir 160 (169)
T 3v7d_A 127 KVVAEMIRG-RSPEEIRRTFN------IV-NDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHTT-CCHHHHHHHHT------CC-CCCCHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------CC-CCCCHHHHHHHH
Confidence 778888875 99999999873 22 349999998875
No 105
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=80.75 E-value=3.4 Score=25.74 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCC
Q 041165 19 IEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDL 65 (85)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~ 65 (85)
.+-|..|+.+++..|...+..||+.+| -|...|+.|........+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 456778889988888889999999999 799999999888765543
No 106
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.28 E-value=3.8 Score=20.96 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 17 WTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
.++.+ ..++.+.-..| .....||..+| -|...++.+....+
T Consensus 16 L~~~~-r~il~l~~~~g-~s~~eIA~~lg--is~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LTTDQ-REALLLTQLLG-LSYADAAAVCG--CPVGTIRSRVARAR 56 (70)
T ss_dssp SCHHH-HHHHHHHHTSC-CCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcC-CCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 44444 45555555667 68999999999 67777777665543
No 107
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.61 E-value=6.1 Score=23.58 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
+-|..|+.+++..|.-.+..||+.+| -|...|+.|......
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILN--TTRQRIARRIDKLKK 49 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 45678888888888889999999999 788889888877543
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=74.47 E-value=5.3 Score=20.95 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHH----hCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 18 TIEEDHKLMSFILN----NGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 18 T~eED~~L~~~v~~----~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
++.| ..++.+.-. .| ..+..||..+| -|...++.+....+
T Consensus 12 ~~~e-r~il~l~~~l~~~~~-~s~~eIA~~l~--is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 12 SERE-AMVLKMRKGLIDGRE-HTLEEVGAYFG--VTRERIRQIENKAL 55 (73)
T ss_dssp CHHH-HHHHHHHHTTTTSSC-CCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHhcccCCC-CCHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 4444 455555443 45 68999999999 77777777665543
No 109
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=73.78 E-value=3 Score=25.75 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCc-----hhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHH
Q 041165 17 WTIEEDHKLMSFILNNGIHCW-----RMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQ 80 (85)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W-----~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~ 80 (85)
.+.+.=..|+.+.+-.....- ..+|..+.| +|+.+||..|. + ...+|+||+..+.+
T Consensus 94 id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~g-kt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 94 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG-KTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSS-CCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 345555555666665554322 567788885 99999999873 2 23599999887654
No 110
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.97 E-value=7.2 Score=23.34 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
+-|..|+.+....|...+..||+.+| -|...|+.|.......
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 44677888888888889999999999 7888999988776543
No 111
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=70.97 E-value=6.2 Score=24.47 Aligned_cols=43 Identities=5% Similarity=0.048 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 19 IEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
.+-|..|+.+.+..|...+..||+.+| -|...|+.|.......
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQLK--KPESTIHFRIKKLQER 58 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 345678888888888889999999999 7888999988776543
No 112
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=70.26 E-value=7.7 Score=23.19 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
+-|..|+.+....|......||+.+| -|...|+.|.....
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFG--VSPETIHVRVEKMK 47 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 34678888888888889999999999 78888988877654
No 113
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=70.19 E-value=8 Score=23.42 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
+-|..|+.++...|.-.+..||+.+| -|...|+.|.......
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVA--LSPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 45677888888888889999999999 7888899888776543
No 114
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=67.96 E-value=5.2 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCCchhhhhhhCC
Q 041165 22 DHKLMSFILNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (85)
|..|..++...| .+|..+|..+|-
T Consensus 13 ~~~l~~ia~~lg-~dWk~LAr~Lg~ 36 (118)
T 2of5_H 13 QSNLLSVAGRLG-LDWPAVALHLGV 36 (118)
T ss_dssp HHHHHHHHHTCC-TTHHHHHHHTTC
T ss_pred HHHHHHHHHHHh-hHHHHHHHHcCC
Confidence 467778888888 699999999983
No 115
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=66.98 E-value=7.4 Score=23.13 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCC
Q 041165 21 EDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPD 64 (85)
Q Consensus 21 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~ 64 (85)
-|..|+.++...|.-.+..||+.+| -+...|..|........
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg--~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIR--IPKATLSYRIKKLEKDG 45 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHT--SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 4667888888888789999999999 78889999988776544
No 116
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=65.22 E-value=11 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhhhC
Q 041165 18 TIEEDHKLMSFILNNGIHCWRMVPKLAG 45 (85)
Q Consensus 18 T~eED~~L~~~v~~~g~~~W~~Ia~~~~ 45 (85)
|..=+..|..++...| .+|..+|..+|
T Consensus 14 ~~~~~~~~~~ia~~lg-~~Wk~LAr~Lg 40 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLG-LSWAELARELQ 40 (111)
T ss_dssp SHHHHHHHHHHHHHHT-TTHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHh-hhHHHHHHHcC
Confidence 6666778888888888 79999999998
No 117
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=64.84 E-value=10 Score=22.48 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
+-|..|+.++...+......||+.+| -|...|+.|-....+.
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIK--LSPPSVTERVRQLESF 46 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHT--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 34677888888888889999999999 7888898887766543
No 118
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=64.83 E-value=8.1 Score=19.89 Aligned_cols=25 Identities=16% Similarity=-0.120 Sum_probs=20.8
Q ss_pred CCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 35 HCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
..+..||..+| -|...++.+....+
T Consensus 26 ~s~~eIA~~lg--is~~tV~~~~~ra~ 50 (68)
T 2p7v_B 26 YTLEEVGKQFD--VTRERIRQIEAKAL 50 (68)
T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 68999999999 78888888777654
No 119
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=64.09 E-value=12 Score=21.76 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 21 EDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 21 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
-|..++.+....|...+..||+.+| -|...++.+......
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~lg--~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKLG--ISETAVRKRVKALEE 44 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 4667778888778789999999998 788889888776543
No 120
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=63.99 E-value=8.1 Score=22.84 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCchhhhhhhC
Q 041165 23 HKLMSFILNNGIHCWRMVPKLAG 45 (85)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~ 45 (85)
+.|..++...| .+|+.+|..+|
T Consensus 25 ~~l~~Ia~~LG-~~Wk~LAR~LG 46 (115)
T 2o71_A 25 RQINQLAQRLG-PEWEPMVLSLG 46 (115)
T ss_dssp HHHHHHHHHCC-TTHHHHHHHTT
T ss_pred HHHHHHHHHHh-hhHHHHHHHcC
Confidence 35667778888 79999999998
No 121
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=62.48 E-value=5.3 Score=25.51 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.5
Q ss_pred CCCCcCCCCHHHHHHHH
Q 041165 10 VGLKRGPWTIEEDHKLM 26 (85)
Q Consensus 10 ~~~~kg~WT~eED~~L~ 26 (85)
|.-..|-||++.|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 55678999999999885
No 122
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=62.35 E-value=14 Score=18.93 Aligned_cols=30 Identities=7% Similarity=-0.118 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCch
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCG 50 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~ 50 (85)
-|.+.|..+...++ ++....|+.+|.+|+.
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGisr~t 48 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGIDLSN 48 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHHH
Confidence 46777888888888 7999999999954443
No 123
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=61.22 E-value=7.8 Score=22.89 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCchhhhhhhC
Q 041165 23 HKLMSFILNNGIHCWRMVPKLAG 45 (85)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~ 45 (85)
+.|..++...| .+|..+|..+|
T Consensus 25 ~~l~~Ia~~lG-~~Wk~LAR~LG 46 (114)
T 2of5_A 25 RQINQLAQRLG-PEWEPMVLSLG 46 (114)
T ss_dssp HHHHHHHHTCC-STHHHHHHTTT
T ss_pred HHHHHHHHHHh-hhHHHHHHHcC
Confidence 35667777788 89999999988
No 124
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=56.10 E-value=13 Score=21.47 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCchhhhhhhCC
Q 041165 22 DHKLMSFILNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (85)
+..|..++...| .+|..+|..+|-
T Consensus 18 ~~~~~~ia~~lg-~~Wk~LAr~Lg~ 41 (110)
T 1wxp_A 18 GEQIEVFANKLG-EQWKILAPYLEM 41 (110)
T ss_dssp HHHHHHHHHHHT-TTHHHHTTTTTC
T ss_pred HHHHHHHHHHHh-hhHHHHHHHhCC
Confidence 455666777778 799999999983
No 125
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=55.70 E-value=24 Score=19.44 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCch
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCG 50 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~ 50 (85)
-|...|..+...++ ++....|+.+|.+|+.
T Consensus 51 ~E~~~i~~aL~~~~-gn~~~aA~~LGIsr~t 80 (91)
T 1ntc_A 51 LERTLLTTALRHTQ-GHKQEAARLLGWGAAT 80 (91)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHHH
Confidence 36677777888888 7999999999965543
No 126
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.32 E-value=20 Score=19.50 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=21.0
Q ss_pred HhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 31 NNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 31 ~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
..| -.-..||..+| -+...++.+..+.+
T Consensus 51 ~~g-~s~~eIA~~lg--is~~tV~~~l~ra~ 78 (92)
T 3hug_A 51 YRG-WSTAQIATDLG--IAEGTVKSRLHYAV 78 (92)
T ss_dssp TSC-CCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred HcC-CCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 335 57899999999 78888887766644
No 127
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=54.18 E-value=39 Score=21.48 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCC-c-hhhhhhhCCCCc---hhhHHHHHHhhhC-CCCCCCCCCHHHHHHHH
Q 041165 23 HKLMSFILNNGIHC-W-RMVPKLAGLLRC---GKSCRLRWINYLR-PDLKRGAFTEDEEDQII 79 (85)
Q Consensus 23 ~~L~~~v~~~g~~~-W-~~Ia~~~~~~Rt---~~qcr~Rw~~~l~-~~~~~~~wt~eEd~~L~ 79 (85)
.++..++...|..+ . ..|-..+.+ .+ +.++-+.|..-.. |....|-||.++|+.|.
T Consensus 65 ~Lv~~l~~e~Gi~~~fs~~Ii~ALs~-tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 65 KLVQDLCDETGIRKNFSTSILTCLSG-DLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHCBCHHHHHHHHHHTTT-CGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHhCcccccHHHHHHHhcC-CcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 33444556667532 1 222223332 22 2356666666555 45668999999999885
No 128
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=53.22 E-value=22 Score=21.07 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCC
Q 041165 21 EDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRP 63 (85)
Q Consensus 21 ED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~ 63 (85)
-|..++.++...|......||+.+| -+...|..+-......
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAG--LSVSAVQSRVRRLESR 48 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 3567777888888789999999999 7888888887765543
No 129
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=52.27 E-value=26 Score=18.88 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhC---CCCchhhhhhhCCCCchhhHHHHHHh
Q 041165 18 TIEEDHKLMSFILNNG---IHCWRMVPKLAGLLRCGKSCRLRWIN 59 (85)
Q Consensus 18 T~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~ 59 (85)
|++-|..++.+....| .-.=..||+.+| -+...+..+-.+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~~ 54 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHH
Confidence 5677888999999998 456689999999 455555555433
No 130
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=52.03 E-value=13 Score=21.75 Aligned_cols=36 Identities=3% Similarity=-0.155 Sum_probs=28.8
Q ss_pred CchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHH
Q 041165 48 RCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHS 83 (85)
Q Consensus 48 Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~ 83 (85)
.|..++.+.+...|..--...+.+++|...|..|..
T Consensus 15 ~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~ 50 (104)
T 2k0m_A 15 ARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALK 50 (104)
T ss_dssp SSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Confidence 577788999999998655567899998888888765
No 131
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=50.45 E-value=26 Score=18.86 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=19.9
Q ss_pred CCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 35 HCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
..+..||..+| -|...++.+-.+.+
T Consensus 39 ~s~~EIA~~lg--is~~tV~~~~~ra~ 63 (87)
T 1tty_A 39 KTLEEVGQYFN--VTRERIRQIEVKAL 63 (87)
T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 68999999999 77777777666544
No 132
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=49.65 E-value=11 Score=16.95 Aligned_cols=10 Identities=20% Similarity=1.013 Sum_probs=7.8
Q ss_pred CCHHHHHHHH
Q 041165 17 WTIEEDHKLM 26 (85)
Q Consensus 17 WT~eED~~L~ 26 (85)
||++|-+..+
T Consensus 1 ~s~~eRq~~L 10 (28)
T 3h8k_B 1 WSADERQRML 10 (28)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8888887765
No 133
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=49.02 E-value=18 Score=21.62 Aligned_cols=25 Identities=16% Similarity=-0.063 Sum_probs=19.9
Q ss_pred CCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 35 HCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
-+...||..+| -|...++.+..+.+
T Consensus 152 ~s~~eIA~~lg--is~~tV~~~l~ra~ 176 (184)
T 2q1z_A 152 LTHRELAAETG--LPLGTIKSRIRLAL 176 (184)
T ss_dssp CSSCCSTTTCC--CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 57899999999 78888888776643
No 134
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=48.50 E-value=18 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCchhhhhhhC
Q 041165 22 DHKLMSFILNNGIHCWRMVPKLAG 45 (85)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~ 45 (85)
=..|..++...+..+|+.++..+|
T Consensus 13 ~~~l~~i~d~v~~~~WK~~aRkLG 36 (112)
T 1ich_A 13 PATLYAVVENVPPLRWKEFVKRLG 36 (112)
T ss_dssp CHHHHHHHHHSCSTTHHHHHHHHT
T ss_pred hHHHHHHHHhCCHHHHHHHHHHcC
Confidence 367788888889889999999998
No 135
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=48.26 E-value=19 Score=19.77 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHH
Q 041165 17 WTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRL 55 (85)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~ 55 (85)
.|...+++++......|+..=-.||+.+|- ||++++--
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LGl-ktAK~VNp 44 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALGM-RTAKDVNR 44 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTTC-CSGGGTHH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhCc-chhhhcCH
Confidence 455556778888899998888899999995 99998843
No 136
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=46.08 E-value=29 Score=20.81 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=19.5
Q ss_pred CCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 35 HCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
-+...||..+| -|...++.+....+
T Consensus 157 ~s~~EIA~~lg--is~~tV~~~l~ra~ 181 (194)
T 1or7_A 157 LSYEEIAAIMD--CPVGTVRSRIFRAR 181 (194)
T ss_dssp CCHHHHHHHTT--SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 57899999999 77888877766543
No 137
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=45.95 E-value=20 Score=18.31 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCch
Q 041165 16 PWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCG 50 (85)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~ 50 (85)
....-|.+.|..+...+ ++-...|+.+|.+|+.
T Consensus 17 ~l~~~Er~~I~~aL~~~--gn~~~aA~~LGIsr~t 49 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--PSTRKLAQRLGVSHTA 49 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--CSHHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHHHHHhCCCHHH
Confidence 34566778888888887 4888999999965554
No 138
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=43.39 E-value=43 Score=18.78 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=21.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCchhh
Q 041165 13 KRGPWTIEEDHKLMSFILNNGIHCWRMV 40 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~W~~I 40 (85)
..+.|+++=++.++++...|.+..-.+|
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~ 32 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKI 32 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCC
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccce
Confidence 4678999999999999999976444333
No 139
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=40.66 E-value=11 Score=21.02 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhhhCC
Q 041165 19 IEEDHKLMSFILNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (85)
.+|-.+|+. | .+|..+|..+|-
T Consensus 12 r~~l~~lL~-----g-~dW~~LA~~Lg~ 33 (85)
T 1ngr_A 12 REEVEKLLN-----G-DTWRHLAGELGY 33 (85)
T ss_dssp THHHHHHSC-----T-THHHHHHHHTTC
T ss_pred HHHHHHHhC-----c-CCHHHHHHHcCC
Confidence 455566666 7 899999999994
No 140
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=39.91 E-value=46 Score=18.15 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHhC---CCCchhhhhhhCCCCchhhHHHHHHhh
Q 041165 18 TIEEDHKLMSFILNNG---IHCWRMVPKLAGLLRCGKSCRLRWINY 60 (85)
Q Consensus 18 T~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 60 (85)
+.+-|+.|+.++...| .-.=..||+.+| -+...++.+-...
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--vsr~tV~~~L~~L 51 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 3456788889999998 456789999999 4555666665544
No 141
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=39.88 E-value=6.5 Score=22.30 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhhhCC
Q 041165 19 IEEDHKLMSFILNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (85)
.+|-+.|+. .+..| .+|..+|..+|-
T Consensus 5 r~~v~~ll~-~~~~G-~dW~~LA~~Lg~ 30 (91)
T 2ib1_A 5 QEEVQRLLM-MGEPA-KGWQELAGHLGY 30 (91)
T ss_dssp HHTTHHHHT-TTCCS-STHHHHHHHHTC
T ss_pred HHHHHHHhc-CCCCC-ccHHHHHHHcCC
Confidence 355566777 34336 799999999983
No 142
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.67 E-value=41 Score=19.34 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=19.8
Q ss_pred CCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 35 HCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
-+...||..+| -|...++.+....+
T Consensus 125 ~s~~EIA~~lg--is~~tV~~~~~ra~ 149 (164)
T 3mzy_A 125 YSYREIATILS--KNLKSIDNTIQRIR 149 (164)
T ss_dssp CCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 57899999999 78888887776643
No 143
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=39.14 E-value=46 Score=19.06 Aligned_cols=35 Identities=0% Similarity=-0.097 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhh
Q 041165 23 HKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINY 60 (85)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~ 60 (85)
..++.++...| -+-..||..+| -|...++.+..+.
T Consensus 31 r~vl~l~~~~g-~s~~EIA~~lg--iS~~tV~~~l~ra 65 (113)
T 1xsv_A 31 RNYLELFYLED-YSLSEIADTFN--VSRQAVYDNIRRT 65 (113)
T ss_dssp HHHHHHHHTSC-CCHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 33444444446 58899999999 6777776665554
No 144
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=38.40 E-value=18 Score=20.22 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCchhhhhhhCCCCchhhH
Q 041165 23 HKLMSFILNNGIHCWRMVPKLAGLLRCGKSC 53 (85)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc 53 (85)
..+..++...| .+|..+|..+| =+..++
T Consensus 15 ~~~~~ia~~lg-~~Wk~Lar~Lg--~~~~~I 42 (99)
T 1fad_A 15 VAFDIVCDNVG-RDWKRLARELK--VSEAKM 42 (99)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHTT--CCHHHH
T ss_pred HHHHHHHHHHh-hhHHHHHHHcC--CCHHHH
Confidence 44555666667 89999999998 344443
No 145
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=37.73 E-value=1.9 Score=18.75 Aligned_cols=17 Identities=53% Similarity=1.001 Sum_probs=10.9
Q ss_pred hHHHHHHhhhCCCCCCCCCC
Q 041165 52 SCRLRWINYLRPDLKRGAFT 71 (85)
Q Consensus 52 qcr~Rw~~~l~~~~~~~~wt 71 (85)
..|.||-.+| +.+|.||
T Consensus 4 slrsrwgrfl---lqrgswt 20 (26)
T 2lkq_A 4 SLRSRWGRFL---LQRGSWT 20 (26)
T ss_dssp TTTTHHHHHT---HHHHTCC
T ss_pred hHHHHHHHHH---HHcCCcc
Confidence 4567787775 3466665
No 146
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.39 E-value=44 Score=20.58 Aligned_cols=25 Identities=12% Similarity=-0.122 Sum_probs=19.2
Q ss_pred CCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 35 HCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 35 ~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
-....||..+| -|...++.+..+.+
T Consensus 204 ~s~~EIA~~lg--is~~~V~~~~~ra~ 228 (239)
T 1rp3_A 204 LPAKEVAKILE--TSVSRVSQLKAKAL 228 (239)
T ss_dssp CCHHHHHHHTT--SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 57899999999 77777777765543
No 147
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.46 E-value=47 Score=16.99 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 17 WTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
.|+.|-+.| .++ ..| ..-..||..+| -+...++.+..+.+.
T Consensus 17 L~~~e~~vl-~l~-~~g-~s~~eIA~~l~--is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAG-LPNKSIAYDLD--ISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHH-HHH-TTT-CCHHHHHHHTT--SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcC-CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 455554444 444 455 58899999999 788888877766554
No 148
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=35.33 E-value=37 Score=20.07 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=26.8
Q ss_pred CchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 48 RCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 48 Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
+++.++..+. -++|+..-+..|++|-..|.+.++.|
T Consensus 27 ~~A~~I~~~~--gid~~~r~~~Lt~~ei~~l~~~i~~~ 62 (114)
T 3r8n_M 27 TRSKAILAAA--GIAEDVKISELSEGQIDTLRDEVAKF 62 (114)
T ss_dssp HHHHHHHHHT--TCCTTCCSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHc--CcCcccCcccCCHHHHHHHHHHHHHh
Confidence 5555555443 47888888999999999999887654
No 149
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=34.74 E-value=68 Score=18.56 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhh--CCCCchhhHHHHHHhhhC
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKLA--GLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~--~~~Rt~~qcr~Rw~~~l~ 62 (85)
..|-..=|..++.+....|...-..||..+ | -|...++.|-...-.
T Consensus 8 ~~~md~~d~~IL~~L~~~g~~s~~eLA~~l~~g--iS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEGNGSPKELEDRDEIR--ISKSSVSRRLKKLAD 55 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHSCBCHHHHHTSTTCC--SCHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHcCCCCHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 467777788888999888988999999999 6 788888888666543
No 150
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=34.26 E-value=85 Score=19.58 Aligned_cols=49 Identities=6% Similarity=0.019 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHH
Q 041165 23 HKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQL 81 (85)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~ 81 (85)
+.|+.+-..-| -.|..||+.+| +|..-+-.-.. -..+.+.++-.+|.++
T Consensus 16 ~~I~~AK~~KG-LTwe~IAe~iG--~S~v~vtaa~l-------GQ~~ls~e~A~kLa~~ 64 (156)
T 1dw9_A 16 DAILLSKAKKD-LSFAEIADGTG--LAEAFVTAALL-------GQQALPADAARLVGAK 64 (156)
T ss_dssp HHHHHHHHHTT-CCHHHHHTTSS--SCHHHHHHHHT-------TSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHhC--cCHHHHHHHHc-------CCCCCCHHHHHHHHHH
Confidence 55666666667 69999999999 77763332221 1234556665555554
No 151
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=34.14 E-value=65 Score=18.17 Aligned_cols=30 Identities=13% Similarity=-0.049 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCch
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCG 50 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~ 50 (85)
-|...|..+...++ ++-...|+.+|.+|+.
T Consensus 58 ~Er~~I~~aL~~~~-gn~~~AA~~LGIsR~T 87 (98)
T 1eto_A 58 VEQPLLDMVMQYTL-GNQTRAALMMGINRGT 87 (98)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHhCCCHHH
Confidence 46666777778888 7899999999965543
No 152
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=32.90 E-value=34 Score=19.47 Aligned_cols=50 Identities=12% Similarity=0.362 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCchhhhhhhCCC--CchhhHHHHHHhhhCCCCCCCCCCHHHHHHHH
Q 041165 22 DHKLMSFILNNGIHCWRMVPKLAGLL--RCGKSCRLRWINYLRPDLKRGAFTEDEEDQII 79 (85)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~~--Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~ 79 (85)
+..|.++|..|| |..++..+..+ .+.-+++.-- .+ +++.||..+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF~~~PSikSSL-KF----LRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCFKKDPSIKSSL-KF----LRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSSTTSSCCHHHHH-HH----HHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccCCCCCchHHHH-HH----HhcCHhHHHHHHHHH
Confidence 478899999998 99999887642 2222222211 11 235688877766654
No 153
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.68 E-value=75 Score=18.43 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHH---HHHHhh--hCCCCC----CCCCCHHHHHHHHHHHH
Q 041165 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCR---LRWINY--LRPDLK----RGAFTEDEEDQIIQLHS 83 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr---~Rw~~~--l~~~~~----~~~wt~eEd~~L~~~v~ 83 (85)
....|.++-..++.++. .| ..-..||..+| .+...++ .+|... +.+... ....|++....|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689998888888874 56 57899999999 5555544 333321 222211 22478887888877764
No 154
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.20 E-value=68 Score=17.49 Aligned_cols=41 Identities=15% Similarity=0.003 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 16 PWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
..|+.|-+.|.- + ..| ..-..||..+| -|...++.+..+.+
T Consensus 27 ~Lt~~e~~vl~l-~-~~g-~s~~eIA~~l~--is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEG-LTNKQIADRMF--LAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHH-H-HTT-CCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcC-CCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 467777655554 4 566 57899999999 78888877766654
No 155
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.85 E-value=78 Score=18.10 Aligned_cols=41 Identities=5% Similarity=-0.060 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 17 WTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 17 WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
.|+.+ ..++.++...| .+-..||..+| -|...++.+..+.+
T Consensus 23 L~~~~-r~vl~l~y~~g-~s~~EIA~~lg--iS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADD-YSLAEIADEFG--VSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHH-HHHHHHHHHTC-CCHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcC-CCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 45554 44455555567 58899999999 67777776655543
No 156
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=30.10 E-value=57 Score=19.00 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC--chhhhhhhCCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHhC
Q 041165 15 GPWTIEEDHKLMSFILNNGIHC--WRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLHSLL 85 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~--W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v~~~ 85 (85)
..+++++-..|.......+... -..|+..++ .+....| .|=|...+...+++|-+.|+..+++|
T Consensus 45 sk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P--~~~dElr-----ali~s~e~~~~~deeL~~IL~~l~ky 110 (113)
T 4ayb_F 45 EKCDAESAQKVVEELSSIISREDVRAVLASICP--ITPDEVR-----SILIMDSNRTYTSEDIQKIIDIIRKY 110 (113)
T ss_dssp CSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCC--CSSCCCC-----TTTTTTCCCCCCCTHHHHHHHHC---
T ss_pred cCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCHHHHH-----HHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 3568888777777766655332 355666677 4444322 23344455668999999999998876
No 157
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=28.49 E-value=62 Score=16.17 Aligned_cols=43 Identities=12% Similarity=-0.024 Sum_probs=30.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh
Q 041165 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l 61 (85)
-...|+.|-+.|.- + ..| ..-..||..+| -|...++.+..+.+
T Consensus 9 ~~~L~~~e~~il~~-~-~~g-~s~~eIA~~l~--is~~tV~~~~~~~~ 51 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQD-KTTKEIASELF--ISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTT-CCHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-H-HcC-CCHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 34577877666655 4 456 58899999999 78888877776654
No 158
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=28.13 E-value=33 Score=25.91 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCchhhhhhhCC
Q 041165 22 DHKLMSFILNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 22 D~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (85)
|..|..+.+..| .+|..+|..||-
T Consensus 498 d~~L~~Ia~~LG-~DWk~LAr~LG~ 521 (581)
T 4d8o_A 498 EERLAYIADHLG-FSWTELARELDF 521 (581)
T ss_dssp CHHHHHHHHHHT-THHHHHHHHTTC
T ss_pred hhHHHHHHHhcc-cCHHHHHHHcCC
Confidence 567888888889 799999999983
No 159
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=27.99 E-value=48 Score=14.75 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHH
Q 041165 16 PWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLR 56 (85)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~R 56 (85)
.-++++-..++.++ ..| ..-..||+.+| -+...++..
T Consensus 5 ~l~~~~~~~i~~~~-~~g-~s~~~IA~~lg--is~~Tv~~~ 41 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLN-VSLHEMSRKIS--RSRHCIRVY 41 (51)
T ss_dssp CCCHHHHHHHHHHH-HTT-CCHHHHHHHHT--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcC-CCHHHHHHHHC--cCHHHHHHH
Confidence 45677766666665 346 57899999999 565555543
No 160
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=27.71 E-value=87 Score=17.62 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhCCC-----CCCCCCCHHHHHHHHHH
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPD-----LKRGAFTEDEEDQIIQL 81 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~~~-----~~~~~wt~eEd~~L~~~ 81 (85)
...|.++-..++.++ ..| .+-..||..+| .+...++.-...+.... -.....|++++..|+.+
T Consensus 5 ~~~s~~~r~~i~~~~-~~G-~s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~ 72 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLN-VSLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA 72 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTT-CCHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH-HcC-CCHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH
Confidence 357788877777776 346 57899999999 66666653322222111 11234788888777765
No 161
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.47 E-value=81 Score=17.18 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=33.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 12 LKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 12 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
......|+.|-+.|.-++ .| ..-..||..+| -+...++.+..+.+.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~--~G-~s~~eIA~~L~--iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE--KG-FTNQEIADALH--LSKRSIEYSLTSIFN 70 (90)
T ss_dssp ----CCCHHHHHHHHHHH--TT-CCHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH--cC-CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 344568888877665554 67 58899999999 788888888877654
No 162
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.29 E-value=73 Score=17.21 Aligned_cols=31 Identities=3% Similarity=-0.104 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCCchhhhhhhCCCCchhhHHH
Q 041165 23 HKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRL 55 (85)
Q Consensus 23 ~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~ 55 (85)
+.++++++.+|.-.=..+|+.|+ =|...+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~--VS~~TIRr 35 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLN--TPQPMINA 35 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTT--CCHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHC--cCHHHHHH
Confidence 35788888999888999999998 66666653
No 163
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=27.08 E-value=27 Score=23.09 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=18.4
Q ss_pred CCCcCCCCHHHHH----------HHHHHHHHhCCCCchhhhh
Q 041165 11 GLKRGPWTIEEDH----------KLMSFILNNGIHCWRMVPK 42 (85)
Q Consensus 11 ~~~kg~WT~eED~----------~L~~~v~~~g~~~W~~Ia~ 42 (85)
...=||||++-|+ +|..+++.+-.++=..++.
T Consensus 113 kSAFGPWt~~tkK~~~~~e~le~kL~~i~k~~t~Gd~~~L~~ 154 (240)
T 2fm8_C 113 KSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGELSKLST 154 (240)
T ss_dssp SCSSSTTSCCSHHHHHHHHHHHHHHHHHHHHC---CCCHHHH
T ss_pred cccCCCCCccchHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3446999998664 4666777665455444443
No 164
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=27.05 E-value=83 Score=17.18 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHH---HHHHhh--hCCCC----CCCCCCHHHHHHHHHHHH
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCR---LRWINY--LRPDL----KRGAFTEDEEDQIIQLHS 83 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr---~Rw~~~--l~~~~----~~~~wt~eEd~~L~~~v~ 83 (85)
...|.++-..++.++. .| ..-..||..+| .+...++ .+|... +.+.. .....++++...|.+++.
T Consensus 16 ~~~s~~~r~~i~~~~~-~g-~s~~~ia~~lg--is~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~ 89 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DG-IRPCVISRQLR--VSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKR 89 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHH
Confidence 3688888888888874 56 57789999999 5554443 344321 22211 122467766666666543
No 165
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=26.08 E-value=80 Score=16.66 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 16 PWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
..|+.|-+.|.- + ..| ..-..||..+| -+...++.+..+.+.
T Consensus 21 ~Lt~~e~~vl~l-~-~~g-~s~~eIA~~l~--is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQG-LPNKMIARRLD--ITESTVKVHVKHMLK 62 (82)
T ss_dssp GSCHHHHHHHHH-H-TTT-CCHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcC-CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 477777665554 4 456 58899999999 788888887776553
No 166
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=25.81 E-value=62 Score=15.60 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 041165 15 GPWTIEEDHKLMSFILNNGI 34 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~ 34 (85)
-..|++|-+.|...+...|.
T Consensus 20 vRlt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 20 LRFSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp EEECHHHHHHHHHHHHHHTC
T ss_pred EEECHHHHHHHHHHHHHhCC
Confidence 35899999999999999994
No 167
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.86 E-value=83 Score=16.45 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=38.5
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCC---chhhhhhhCCCCchhhHHHHHHh
Q 041165 6 CCDKVGLKRGPWTIEEDHKLMSFILNNGIHC---WRMVPKLAGLLRCGKSCRLRWIN 59 (85)
Q Consensus 6 ~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~~Rt~~qcr~Rw~~ 59 (85)
....|...+..+|++.-..|..........+ =..||..+| =+..|+..=|.|
T Consensus 4 ~~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~--l~~~qV~~WFqN 58 (76)
T 2dn0_A 4 GSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTG--LSTREVRKWFSD 58 (76)
T ss_dssp SCSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC--CChHHhhHHhHH
Confidence 3456777899999999999998887765433 356777788 677787765554
No 168
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=24.59 E-value=64 Score=20.27 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCC
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (85)
+=+..+..++...| .+|..+|..+|-
T Consensus 96 d~~~~~~~ia~~lg-~~Wk~Lar~Lgl 121 (191)
T 2gf5_A 96 DLCAAFNVICDNVG-KDWRRLARQLKV 121 (191)
T ss_dssp HHHHHHHHHHHSCC-TTHHHHHHHTTC
T ss_pred cHHHHHHHHHHccc-hhHHHHHHHcCC
Confidence 33445555666667 899999999873
No 169
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=24.40 E-value=95 Score=16.93 Aligned_cols=32 Identities=3% Similarity=-0.170 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhhhCCCCch
Q 041165 18 TIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCG 50 (85)
Q Consensus 18 T~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~ 50 (85)
..-|.+.|.++...++ +|....|+.+|.+|+.
T Consensus 39 ~~~Er~~I~~aL~~~~-GN~s~AA~~LGISR~T 70 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCD-RNVSETARRLNMHRRT 70 (81)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHhC-CCHHHHHHHhCCCHHH
Confidence 3456677778888888 7999999999965543
No 170
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.31 E-value=92 Score=16.73 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=30.2
Q ss_pred cCCCCHHHHHHHHHHHHHh-CCCCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 14 RGPWTIEEDHKLMSFILNN-GIHCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 14 kg~WT~eED~~L~~~v~~~-g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
+..+|++.-..++.++... | ..-..||..+|. +. +.-.||.....
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g-~s~~~ia~~~gI--s~-~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG-ASLQQIANDLGI--NR-VTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG-SCHHHHHHHHTS--CH-HHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHHCc--CH-HHHHHHHHHHh
Confidence 4578998877666666443 5 567899999994 44 44556765443
No 171
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=24.03 E-value=36 Score=20.50 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=16.1
Q ss_pred hHHHHHHhhhC-CCCCCCCCCHHHHHHHHH
Q 041165 52 SCRLRWINYLR-PDLKRGAFTEDEEDQIIQ 80 (85)
Q Consensus 52 qcr~Rw~~~l~-~~~~~~~wt~eEd~~L~~ 80 (85)
.|-+-=+.... ..+ ..+|+|||.+|=.
T Consensus 73 ~Ci~vir~~~~~~pL--~~lTpEEDFILG~ 100 (120)
T 2guk_A 73 ECMEAIRLFVSGRSL--NSLTPEEDFIIGA 100 (120)
T ss_dssp HHHHHHHHHHTTSCG--GGCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCch--hhCCcHHHHHHHH
Confidence 45554444443 222 3599999998743
No 172
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=24.00 E-value=60 Score=19.18 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=12.5
Q ss_pred HHhCCCCchhhhhhhCC
Q 041165 30 LNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 30 ~~~g~~~W~~Ia~~~~~ 46 (85)
...| .+|+.+|..+|-
T Consensus 14 ~~lG-~~Wk~LAR~LGl 29 (122)
T 3ezq_B 14 DNVG-KDWRRLARQLKV 29 (122)
T ss_dssp TTCC-TTHHHHHHHTTC
T ss_pred Hhhh-hhHHHHHHHhCC
Confidence 3446 899999999883
No 173
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=23.81 E-value=1.1e+02 Score=17.28 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=25.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCchhhhhhhCC
Q 041165 13 KRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGL 46 (85)
Q Consensus 13 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~ 46 (85)
++...|.|+-..++.++...|...=..||+.+|.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gv 37 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNI 37 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTC
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCC
Confidence 4678999999999998876673222379999984
No 174
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.56 E-value=94 Score=16.58 Aligned_cols=42 Identities=19% Similarity=0.077 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhhC
Q 041165 16 PWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLR 62 (85)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l~ 62 (85)
..|+.|-+.|.- + ..| ..-..||..+| -+...++.+..+.+.
T Consensus 29 ~Lt~~e~~vl~l-~-~~g-~s~~eIA~~l~--is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKG-YSNQEIASASH--ITIKTVKTHVSNILS 70 (91)
T ss_dssp GCCSHHHHHHHH-H-HTT-CCTTHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcC-CCHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 467777655544 4 456 68899999999 788888887776654
No 175
>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex, restriction enzyme, PSPGI, base FL hydrolase-DNA complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP}
Probab=21.40 E-value=13 Score=25.30 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.9
Q ss_pred hhHHHHHHhhhC
Q 041165 51 KSCRLRWINYLR 62 (85)
Q Consensus 51 ~qcr~Rw~~~l~ 62 (85)
..||+||+.+|+
T Consensus 161 TTcKDRWRQVl~ 172 (272)
T 3bm3_A 161 RKVRERWREAVG 172 (272)
T ss_dssp SSCTTTHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 479999999874
No 176
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.32 E-value=1.3e+02 Score=17.55 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhhCCCCchhhHHHHHHhhh------CCCCC----CCCCCHHHHHHHHHHHH
Q 041165 15 GPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL------RPDLK----RGAFTEDEEDQIIQLHS 83 (85)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~~qcr~Rw~~~l------~~~~~----~~~wt~eEd~~L~~~v~ 83 (85)
...|.++-..++.++. .| ..-..||..+| .+...++ ||.+.. .+... ....|+++...|.+++.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3688888888888874 56 57899999999 5554443 454432 22111 22467777777777654
No 177
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=21.21 E-value=84 Score=21.85 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhhhhh-CCCCchhhHHHHHHhhhCCCCCCCCCCHHHHHHHHHHH
Q 041165 16 PWTIEEDHKLMSFILNNGIHCWRMVPKLA-GLLRCGKSCRLRWINYLRPDLKRGAFTEDEEDQIIQLH 82 (85)
Q Consensus 16 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~-~~~Rt~~qcr~Rw~~~l~~~~~~~~wt~eEd~~L~~~v 82 (85)
-++++|=+.|+.........+|......- |.+.+..+++.=|.- +. .+|.+|-..|++.|
T Consensus 232 lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~v-v~------~~~~eer~~fL~Fv 292 (358)
T 1c4z_A 232 LFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEI-VH------SFTDEQKRLFLQFT 292 (358)
T ss_dssp CSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHH-HH------TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHH-HH------hCCHHHHHHHHHHH
Confidence 58999998888766555555677766665 334555667766654 32 59999999999876
No 178
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=21.01 E-value=54 Score=21.80 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhhCCCCch
Q 041165 20 EEDHKLMSFILNNGIHCWRMVPKLAGLLRCG 50 (85)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rt~ 50 (85)
-|.+.|..+...++ +|-...|+.+|.+|+.
T Consensus 268 ~e~~~i~~~l~~~~-gn~~~aA~~Lgi~r~t 297 (304)
T 1ojl_A 268 VEKEVILAALEKTG-GNKTEAARQLGITRKT 297 (304)
T ss_dssp HHHHHHHHHHHTTT-TCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCcCHHH
Confidence 45667777888888 7889999999966654
No 179
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=20.47 E-value=33 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=11.7
Q ss_pred hCCCCchhhhhhhCC
Q 041165 32 NGIHCWRMVPKLAGL 46 (85)
Q Consensus 32 ~g~~~W~~Ia~~~~~ 46 (85)
.| ++|..+|..+|.
T Consensus 30 ~g-~dWr~LA~~Lg~ 43 (103)
T 1wmg_A 30 RG-NDWRLLAQKLSM 43 (103)
T ss_dssp TT-SSHHHHHHHTTC
T ss_pred Cc-cCHHHHHHHcCC
Confidence 35 799999999984
No 180
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=20.29 E-value=98 Score=15.58 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=36.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCC---chhhhhhhCCCCchhhHHHHHHhh
Q 041165 9 KVGLKRGPWTIEEDHKLMSFILNNGIHC---WRMVPKLAGLLRCGKSCRLRWINY 60 (85)
Q Consensus 9 k~~~~kg~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~~Rt~~qcr~Rw~~~ 60 (85)
++.-.+..+|++.-..|..........+ =..+|..+| =+..|+..=|.|.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~qV~~WFqNr 54 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTG--LSPRVIRVWFQNK 54 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHC--cCHHHHHHHhHHH
Confidence 4556788899999999999888765443 356777788 7888887655553
Done!