Your job contains 1 sequence.
>041166
LTLIEFYSTKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQV
LPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA
AYFADKTSVVDAD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041166
(133 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 122 3.5e-07 1
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 122 4.1e-07 1
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 122 4.1e-07 1
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 115 1.0e-06 1
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 116 1.7e-06 1
TIGR_CMR|CPS_3649 - symbol:CPS_3649 "tRNA pseudouridine s... 115 2.1e-06 1
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 113 3.9e-06 1
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 113 4.4e-06 1
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 109 4.4e-06 1
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 112 9.3e-06 1
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 112 1.3e-05 1
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 108 1.4e-05 1
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 108 1.4e-05 1
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 108 1.5e-05 1
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 108 1.6e-05 1
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 107 1.8e-05 1
UNIPROTKB|G4MYD1 - symbol:MGG_08117 "DRAP deaminase" spec... 108 2.7e-05 1
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 104 3.7e-05 1
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 104 3.7e-05 1
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 104 3.8e-05 1
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 106 4.3e-05 1
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 107 4.5e-05 1
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 98 7.5e-05 1
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 101 8.2e-05 1
SGD|S000003401 - symbol:PUS6 "tRNA:pseudouridine synthase... 102 9.1e-05 1
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 105 9.5e-05 1
CGD|CAL0004292 - symbol:orf19.2788 species:5476 "Candida ... 100 0.00015 1
UNIPROTKB|Q59PV5 - symbol:CaO19.2788 "Putative uncharacte... 100 0.00015 1
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 96 0.00017 1
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 96 0.00017 1
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 98 0.00019 1
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 93 0.00036 1
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 93 0.00036 1
UNIPROTKB|F1PK69 - symbol:RPUSD2 "Uncharacterized protein... 98 0.00038 1
RGD|1306147 - symbol:Rpusd2 "RNA pseudouridylate synthase... 98 0.00038 1
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 94 0.00079 1
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 122 (48.0 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 32/96 (33%), Positives = 48/96 (50%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXX 91
K D+P LE+ ++D DL+ +NKP GL V P T++ +
Sbjct: 72 KAEDIP--LEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVL--ALEPEMEDFDDPL 127
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHRL + TSG+LL AK + A ++A F ++T
Sbjct: 128 RPGIVHRLDKDTSGLLLVAKNREALANLSAQFKERT 163
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 122 (48.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXX 90
W+ D+P L + YEDDD+I +NKP V PG +TVL L +
Sbjct: 77 WEAQDLP--LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGI 134
Query: 91 XHPVPVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 -----VHRLDKDTTGLMVVAKTVPAQT 156
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 122 (48.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXX 90
W+ D+P L + YEDDD+I +NKP V PG +TVL L +
Sbjct: 77 WEAQDLP--LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGI 134
Query: 91 XHPVPVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 -----VHRLDKDTTGLMVVAKTVPAQT 156
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 115 (45.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 35/107 (32%), Positives = 51/107 (47%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRX 79
A + +Y LP P PYL ++ Y+DDD++ LNK SG+ +PG L + + L+ R
Sbjct: 3 ANPDFIY--LP---PMSPYL-DIIYQDDDIVVLNKASGILSVPGRLPEHQDCLQNRVQRV 56
Query: 80 XXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL TSGI++ A K A I+ F +
Sbjct: 57 LPTATI----------VHRLDMATSGIMIMALNKPAHVAISRQFEQR 93
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXX 91
K ++P L++ YED+DL+ +NK +G+ V P T++ L +
Sbjct: 76 KPEEIP--LDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQNLSGIGGVL-- 131
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHRL + TSG+L+ AK LA +A +K +V
Sbjct: 132 RPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAV 169
>TIGR_CMR|CPS_3649 [details] [associations]
symbol:CPS_3649 "tRNA pseudouridine synthase C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 HOGENOM:HOG000275920
KO:K06175 RefSeq:YP_270317.1 ProteinModelPortal:Q47Y03
STRING:Q47Y03 GeneID:3523321 KEGG:cps:CPS_3649 PATRIC:21470223
OMA:EIANAVC BioCyc:CPSY167879:GI48-3671-MONOMER Uniprot:Q47Y03
Length = 304
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 32/96 (33%), Positives = 53/96 (55%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXH 92
EP+ P +L++ Y+D+ ++A++KP+GL F R+ + + + +
Sbjct: 15 EPEKP-VLDILYQDEYMVAVDKPAGL-------FVHRSYMDKDEI-YFALQLVRDQVGQY 65
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
PVHRL R TSG+LL A TK T ++ FA+K+S
Sbjct: 66 VYPVHRLDRPTSGVLLFALTKDVATKLSEAFANKSS 101
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 113 (44.8 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXX 90
W D+ L++ YEDDD++ +NKP+GL V P T+L L
Sbjct: 76 WIAQDIE--LDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHIPDIINVPRAGI 133
Query: 91 XHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL + T+G+++ AKT A+T + A ++
Sbjct: 134 -----VHRLDKDTTGLMVVAKTIQAQTQLVAQLQSRS 165
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 113 (44.8 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRL 99
L V YEDDDLI ++KP+G+ V P T++ L P VHR+
Sbjct: 85 LVVVYEDDDLIVIDKPAGMVVHPAPGTPSGTLVNALL-AHCGDNLSGVGGVKRPGIVHRI 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFA 124
+ TSG+L+ AK+ A +AA FA
Sbjct: 144 DKDTSGLLVVAKSDAAHHGLAAQFA 168
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 109 (43.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR-TVLKQLQWRXXXXXXXXXXX 89
+ P P+L+ + Y+DD ++ +NKPSGL +PG L + + +V+ ++Q R
Sbjct: 6 YNPPQEPWLV-ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-RDYPQAES---- 59
Query: 90 XXHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL TSG+++ A TK A+ + F ++
Sbjct: 60 ------VHRLDMATSGVIVVALTKAAERELKRQFRER 90
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 112 (44.5 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXX 81
+L+ H++ EP V ++V +EDD+++ ++KPSG+ V P G ++ T+ K LQ
Sbjct: 170 DLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQNNLGF 229
Query: 82 XXXXXXXXXXHPVPVHRLGRGTSGILLCAKT 112
P +RL R TSG++ AKT
Sbjct: 230 VVN----------PCNRLDRLTSGLMFLAKT 250
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXX 81
+L+ H++ EP V +++ +ED+D++ ++KPS + V P G ++ T+ K L+ +
Sbjct: 143 DLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLERQLGY 202
Query: 82 XXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKL 114
HP +RL + TSG++ AKT L
Sbjct: 203 SV--------HPC--NRLDKPTSGLMFLAKTPL 225
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 37/120 (30%), Positives = 53/120 (44%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K KN + A +L P E D + ++V YED+DL+ LNKPS L V +
Sbjct: 47 SFKLKNGDIISIASLKLCNEIKPQFEVD--FDIDVLYEDEDLLVLNKPSNLVVHGASSVK 104
Query: 68 QRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
T++ L + V HRL + TSG +L AK ++ ADK+
Sbjct: 105 NATLVDWLIEKKYTLSNLGGEIRAGLV--HRLDKDTSGSILIAKNNFTHQKLSEQLADKS 162
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXX 90
W +P L+V YED+ L+ +NKP GL V PG + +T++ L
Sbjct: 82 WVPQPIP--LDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGI 139
Query: 91 XHPVPVHRLGRGTSGILLCAKT 112
+HRL + TSG+LL A+T
Sbjct: 140 -----IHRLDKDTSGLLLIART 156
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 108 (43.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRL 99
L+V YEDD L+ + KP+GL V PG +++T++ L+ P VHRL
Sbjct: 79 LDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILE-HHYPTEKLSSLDSSRPGIVHRL 137
Query: 100 GRGTSGILLCAKTKLA 115
+ T+G L+ AKT A
Sbjct: 138 DKDTAGFLIVAKTNPA 153
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/87 (35%), Positives = 43/87 (49%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRLGR 101
V + DDD+I LNKP+GL V GG Q R V +P VHRL +
Sbjct: 93 VLHRDDDIIVLNKPAGLAV-QGGSGQTRHV-------DGLSEALRFGNDENPRLVHRLDK 144
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKTS 128
TSG+L+ A+T+ A + A F + +
Sbjct: 145 DTSGVLVLARTREAAARLTAAFRHRNT 171
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 107 (42.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXX 91
EP D+P L++ YED+D+I +NKP L V PG TVL L
Sbjct: 78 EPQDIP--LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI- 134
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 ----VHRLDKDTTGLMVVAKTVPAQT 156
>UNIPROTKB|G4MYD1 [details] [associations]
symbol:MGG_08117 "DRAP deaminase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CM001232 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 KO:K15454 RefSeq:XP_003715073.1
ProteinModelPortal:G4MYD1 EnsemblFungi:MGG_08117T0 GeneID:2678399
KEGG:mgr:MGG_08117 Uniprot:G4MYD1
Length = 487
Score = 108 (43.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 23 ELVYHRLPWKEPDVPY-LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXX 81
EL+ H EP ++V +EDD++I +NKPSG+ V P G + +V++ ++
Sbjct: 134 ELIAHICHRHEPPCTADPVQVLHEDDEMIVINKPSGMPVHPAGRYNFNSVVEVMR----- 188
Query: 82 XXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLA 115
P +RL R TSGI+ AKT A
Sbjct: 189 ---SERSRDFKAYPCNRLDRLTSGIMFIAKTPQA 219
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 104 (41.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 35/88 (39%), Positives = 44/88 (50%)
Query: 42 VFYEDDDLIALNKPSGLQVLPG-GL-FQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRL 99
+ YEDD L+ LNKPSG V G GL F L+ L+ + VHR+
Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLEL-----------VHRI 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
R TSGILL AK + A + A F +KT
Sbjct: 146 DRDTSGILLVAKKRSALRHLQAQFREKT 173
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 104 (41.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 35/88 (39%), Positives = 44/88 (50%)
Query: 42 VFYEDDDLIALNKPSGLQVLPG-GL-FQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRL 99
+ YEDD L+ LNKPSG V G GL F L+ L+ + VHR+
Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLEL-----------VHRI 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
R TSGILL AK + A + A F +KT
Sbjct: 146 DRDTSGILLVAKKRSALRHLQAQFREKT 173
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 104 (41.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 33/111 (29%), Positives = 50/111 (45%)
Query: 21 GSELVYHRLPWKEPDVPYLLE----VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
G E V +P P VP E V +ED D++ ++KP+G+ V P T++ L
Sbjct: 61 GGERVVVTVPPPAPAVPEAEEIPLVVLHEDGDVVVVDKPAGMVVHPAAGNPGGTLVNALL 120
Query: 77 WRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ + TSG+L+ AK+ A ++ F D T
Sbjct: 121 --AHCTDLSGIGGEIRPGIVHRIDKDTSGVLVVAKSDRAHESLSRQFHDHT 169
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 106 (42.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 42 VFYEDDDLIALNKPSGLQVLPG-GLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRLG 100
V Y+D +I LNKP GL V G G+ +T + +L P VHRL
Sbjct: 185 VLYKDPAIIVLNKPHGLAVQGGSGI---KTSIDEL-----AASCLKFDKSESPRLVHRLD 236
Query: 101 RGTSGILLCAKTKLAKTCIAAYFADKTSVVDA 132
R SG+L+ A+T+ A T + + F +KT+ A
Sbjct: 237 RDCSGLLVLARTQTAATVLHSIFREKTTGASA 268
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 107 (42.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXX 81
+L+ HR +EP V +++ +EDDDL+ ++KP G+ V P G ++ TV K +
Sbjct: 153 DLISHRSYRREPPVSSRDIKIVFEDDDLLVIDKPGGIPVHPTGRYRYNTVTKIFEHEKGK 212
Query: 82 XXXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
HP +RL R TSG++ K+ + + D+
Sbjct: 213 IV--------HPC--NRLDRLTSGLMFLGKSSKGANNMMSQIRDR 247
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 98 (39.6 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPG-GLFQQRTVLKQLQWRXXXXXXXXXXX 89
+ P P L+V +ED +LI LNKP+GL +PG G +L ++Q
Sbjct: 5 YNPPQDP--LDVLHEDAELIVLNKPAGLLSVPGRGAHLADCLLSRVQ-----------AA 51
Query: 90 XXHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ VHRL R TSG+++ A+T A+ + F ++
Sbjct: 52 FPGALLVHRLDRDTSGVMVFAQTPHAQRNLGRQFEER 88
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 101 (40.6 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRL 99
L + YEDD ++ +NKP+GL V PG T+L L VHRL
Sbjct: 84 LNIVYEDDYILVINKPAGLVVHPGAGNPDGTLLNALLHHYPALNVVPRAGI-----VHRL 138
Query: 100 GRGTSGILLCAKTKLAKT 117
+ T+G+++ AKT A+T
Sbjct: 139 DKDTTGLMVVAKTIAAQT 156
>SGD|S000003401 [details] [associations]
symbol:PUS6 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
SGD:S000003401 GO:GO:0005739 EMBL:BK006941 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 RefSeq:NP_011690.3 GeneID:853085
KEGG:sce:YGR174C RefSeq:NP_011685.3 GeneID:853079 KEGG:sce:YGR169C
KO:K15453 GO:GO:0031119 eggNOG:COG0564 EMBL:Z72954 PIR:S64480
ProteinModelPortal:P53294 SMR:P53294 DIP:DIP-5429N MINT:MINT-544439
STRING:P53294 PaxDb:P53294 PeptideAtlas:P53294 EnsemblFungi:YGR169C
CYGD:YGR169c GeneTree:ENSGT00510000048339 HOGENOM:HOG000167783
OMA:KWYLARV OrthoDB:EOG40CMS0 BioCyc:MetaCyc:MONOMER-16704
NextBio:973044 Genevestigator:P53294 GermOnline:YGR169C
Uniprot:P53294
Length = 404
Score = 102 (41.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 30/105 (28%), Positives = 51/105 (48%)
Query: 8 STKHKNSAPL-QGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLF 66
+T HK+ P+ Q E+ LP + + +ED+ ++ ++KPSG+ V P G F
Sbjct: 90 TTTHKHEPPVKQWCSQEVEAEDLPGRIAG----FNIVFEDESILVIDKPSGIPVHPTGQF 145
Query: 67 QQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAK 111
Q T+ + L+ +P +RL + TSG+L+ AK
Sbjct: 146 YQNTITELLKLHGVDA-----------LPCYRLDKITSGLLILAK 179
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 105 (42.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 35/101 (34%), Positives = 52/101 (51%)
Query: 26 YHRLPWKEPDVPYLLE-VFYEDDDLIALNKPSGLQVLPG-GLFQQRTV-LKQLQWRXXXX 82
Y RL + ++ + E V Y+D+ +I LNKP GL V G GL + + L L++
Sbjct: 415 YARL--SDQEIKEIRESVLYKDEHIIVLNKPQGLSVQGGTGLNKHLDMMLSHLRFEKDE- 471
Query: 83 XXXXXXXXXHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+P VHRL R TSGIL+ ++KLA + + F
Sbjct: 472 ---------NPKLVHRLDRNTSGILILGRSKLAASAMTKKF 503
>CGD|CAL0004292 [details] [associations]
symbol:orf19.2788 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 23 ELVYHRLPWKEPDVPY---LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRX 79
+++ H EP +P+ +++ YEDD+++ ++KPSG+ P G + ++ + ++ +
Sbjct: 87 DIICHTKHRHEPPIPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQL 146
Query: 80 XXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTK 113
HRL + TSG+L+ AKTK
Sbjct: 147 NMDSIWT---------CHRLDKVTSGVLVLAKTK 171
>UNIPROTKB|Q59PV5 [details] [associations]
symbol:CaO19.2788 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 23 ELVYHRLPWKEPDVPY---LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRX 79
+++ H EP +P+ +++ YEDD+++ ++KPSG+ P G + ++ + ++ +
Sbjct: 87 DIICHTKHRHEPPIPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQL 146
Query: 80 XXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKTK 113
HRL + TSG+L+ AKTK
Sbjct: 147 NMDSIWT---------CHRLDKVTSGVLVLAKTK 171
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 96 (38.9 bits), Expect = 0.00017, P = 0.00017
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHR 98
+LE+ Y+D+ L+A+NKP+G+ V L + T R H P+HR
Sbjct: 1 MLEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQ--------HVFPLHR 52
Query: 99 LGRGTSGILLCAKTKLAKTCIAAYFAD 125
L R TSG+L+ A + + + FA+
Sbjct: 53 LDRPTSGVLVFALSSQIASEVMPMFAN 79
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 96 (38.9 bits), Expect = 0.00017, P = 0.00017
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHR 98
+LE+ Y+D+ L+A+NKP+G+ V L + T R H P+HR
Sbjct: 1 MLEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQ--------HVFPLHR 52
Query: 99 LGRGTSGILLCAKTKLAKTCIAAYFAD 125
L R TSG+L+ A + + + FA+
Sbjct: 53 LDRPTSGVLVFALSSQIASEVMPMFAN 79
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 98 (39.6 bits), Expect = 0.00019, P = 0.00019
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRL 99
+ V YED D+I +NK G+ V PG T++ L P +HRL
Sbjct: 96 ISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALV-AHYGNSLSHVGKATRPGIIHRL 154
Query: 100 GRGTSGILLCAKTK 113
+ TSG+++ AK +
Sbjct: 155 DKDTSGLMVIAKNE 168
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 93 (37.8 bits), Expect = 0.00036, P = 0.00036
Identities = 29/93 (31%), Positives = 43/93 (46%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXX 90
+ P P++ +V YED+ +IA NKPSGL +PG + + W
Sbjct: 6 YNPPKDPWI-DVIYEDEHIIAANKPSGLLSVPGRPVEHYDSM----WARLVDYCPDVKV- 59
Query: 91 XHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
VHRL TSG++L AK K ++ + F
Sbjct: 60 -----VHRLDMSTSGLILFAKGKHMESALKKQF 87
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 93 (37.8 bits), Expect = 0.00036, P = 0.00036
Identities = 29/93 (31%), Positives = 43/93 (46%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXX 90
+ P P++ +V YED+ +IA NKPSGL +PG + + W
Sbjct: 6 YNPPKDPWI-DVIYEDEHIIAANKPSGLLSVPGRPVEHYDSM----WARLVDYCPDVKV- 59
Query: 91 XHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
VHRL TSG++L AK K ++ + F
Sbjct: 60 -----VHRLDMSTSGLILFAKGKHMESALKKQF 87
>UNIPROTKB|F1PK69 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AAEX03016068
Ensembl:ENSCAFT00000014582 Uniprot:F1PK69
Length = 552
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 33/108 (30%), Positives = 53/108 (49%)
Query: 11 HKNSAPLQGAG-----SELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGG 64
H N P+Q ++ + +R+ EP V + + E++D++ ++KPS + V P G
Sbjct: 195 HLNEEPVQDLSIMLKDNDFLRNRVHRHEPPVTAEPVRLLAENEDVVVVDKPSSIPVHPCG 254
Query: 65 LFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKT 112
F+ TV+ L HP+ HRL R TSG+L+ AKT
Sbjct: 255 RFRHNTVIFIL-------GKEHQLKELHPL--HRLDRLTSGVLMFAKT 293
>RGD|1306147 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain containing 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
RGD:1306147 GO:GO:0003723 EMBL:CH473949 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
CTD:27079 OMA:HLNEEPV OrthoDB:EOG4DV5KW IPI:IPI00914730
RefSeq:NP_001129317.1 RefSeq:XP_003749602.1 UniGene:Rn.23750
Ensembl:ENSRNOT00000014129 GeneID:100911166 GeneID:311326
KEGG:rno:100911166 KEGG:rno:311326 UCSC:RGD:1306147 NextBio:663325
Uniprot:D4ACD4
Length = 553
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 33/108 (30%), Positives = 52/108 (48%)
Query: 11 HKNSAPLQGAG-----SELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGG 64
H N P+Q ++ + + + EP V + + E+DD++ ++KPS + V P G
Sbjct: 201 HLNEEPVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENDDVVVIDKPSSIPVHPCG 260
Query: 65 LFQQRTVLKQLQWRXXXXXXXXXXXXXHPVPVHRLGRGTSGILLCAKT 112
F+ TV+ L HP+ HRL R TSG+L+ AKT
Sbjct: 261 RFRHNTVIFIL-------GKEHQLKELHPL--HRLDRLTSGVLMFAKT 299
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 94 (38.1 bits), Expect = 0.00079, P = 0.00079
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 33 EPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRXXXXXXXXXXXXX 91
EP V +++ E+D+++ ++KPS L V P G F+ TV+ L
Sbjct: 126 EPPVTAQPIQILVENDEVVVVDKPSSLPVHPCGRFRHNTVIFIL-------GKEHNLKEL 178
Query: 92 HPVPVHRLGRGTSGILLCAKT 112
H + HRL R TSG+L+ AKT
Sbjct: 179 HTI--HRLDRMTSGVLMFAKT 197
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 133 120 0.00091 102 3 11 22 0.36 31
29 0.48 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 581 (62 KB)
Total size of DFA: 131 KB (2082 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 10.41u 0.06s 10.47t Elapsed: 00:00:12
Total cpu time: 10.41u 0.06s 10.47t Elapsed: 00:00:15
Start: Fri May 10 01:01:17 2013 End: Fri May 10 01:01:32 2013