BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041166
(133 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225449104|ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [Vitis vinifera]
Length = 348
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/158 (68%), Positives = 121/158 (76%), Gaps = 25/158 (15%)
Query: 1 LTLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPD 35
LTLI++YS+KHKNSAPLQG AGS+LVYHRLPW+EPD
Sbjct: 29 LTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGTVVTEPKTILRAGSKLVYHRLPWQEPD 88
Query: 36 VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP 95
PYLLE+ YEDDD+IALNKPSGLQVLPGGLFQQRTVL QLQWRA+KQ+S + Q SH VP
Sbjct: 89 APYLLEILYEDDDVIALNKPSGLQVLPGGLFQQRTVLTQLQWRANKQNSLPACQESHSVP 148
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVDAD 133
VHRLGRGTSGILLCAKTKLAKT +AAYFAD TSVV +
Sbjct: 149 VHRLGRGTSGILLCAKTKLAKTRLAAYFADGTSVVGGN 186
>gi|296086047|emb|CBI31488.3| unnamed protein product [Vitis vinifera]
Length = 347
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/162 (69%), Positives = 123/162 (75%), Gaps = 29/162 (17%)
Query: 1 LTLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPD 35
LTLI++YS+KHKNSAPLQG AGS+LVYHRLPW+EPD
Sbjct: 29 LTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGTVVTEPKTILRAGSKLVYHRLPWQEPD 88
Query: 36 VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP 95
PYLLE+ YEDDD+IALNKPSGLQVLPGGLFQQRTVL QLQWRA+KQ+S + Q SH VP
Sbjct: 89 APYLLEILYEDDDVIALNKPSGLQVLPGGLFQQRTVLTQLQWRANKQNSLPACQESHSVP 148
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV----DAD 133
VHRLGRGTSGILLCAKTKLAKT +AAYFAD TSVV DAD
Sbjct: 149 VHRLGRGTSGILLCAKTKLAKTRLAAYFADGTSVVGGNRDAD 190
>gi|224100817|ref|XP_002312025.1| predicted protein [Populus trichocarpa]
gi|222851845|gb|EEE89392.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 118/155 (76%), Gaps = 25/155 (16%)
Query: 1 LTLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPD 35
LTLI FYS+K+KNSAPLQG G ELVYHRLPW+EPD
Sbjct: 39 LTLIHFYSSKYKNSAPLQGWLQRIHNGQITIDGEVVKEPKAILRDGMELVYHRLPWREPD 98
Query: 36 VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP 95
PYLL+V YEDDD++ALNKP GLQVLPGGLFQQRTVL QLQWRASK SSSL+ Q SHPVP
Sbjct: 99 APYLLQVLYEDDDMVALNKPPGLQVLPGGLFQQRTVLMQLQWRASKGSSSLAIQGSHPVP 158
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
VHRLGRGTSGILLCAKTK+AKT +AAYFAD TS++
Sbjct: 159 VHRLGRGTSGILLCAKTKVAKTSLAAYFADGTSLI 193
>gi|357443349|ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
gi|358349060|ref|XP_003638558.1| RNA pseudourine synthase [Medicago truncatula]
gi|355481000|gb|AES62203.1| RNA pseudourine synthase [Medicago truncatula]
gi|355504493|gb|AES85696.1| RNA pseudourine synthase [Medicago truncatula]
Length = 371
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 114/157 (72%), Gaps = 25/157 (15%)
Query: 1 LTLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPD 35
LTLIEFYSTK+K+SAPLQG GS+LVYHR+PWKEPD
Sbjct: 31 LTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPD 90
Query: 36 VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP 95
P+ +EV YEDDD+IALNKPSGLQVLPGGLFQQRTVL QLQW + +S+ + Q HPVP
Sbjct: 91 APHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVP 150
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVDA 132
VHRLGRGTSGILLCAKTKLA+ +A+YFAD TS ++
Sbjct: 151 VHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEG 187
>gi|356576201|ref|XP_003556222.1| PREDICTED: RNA pseudourine synthase 5-like [Glycine max]
Length = 371
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 112/154 (72%), Gaps = 25/154 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYSTK+K+SAPLQG GS+L+YHRLPWKEPD
Sbjct: 32 TLIEFYSTKYKSSAPLQGWLQRIKSGQITVDGGVVTDSNTVLRVGSKLIYHRLPWKEPDA 91
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P++++V YEDDD+IALNKPSGLQVLPGGL+QQRT+L QLQW A+ Q + + HPVPV
Sbjct: 92 PHMIDVLYEDDDMIALNKPSGLQVLPGGLYQQRTILTQLQWEANNQGTCEMHKRLHPVPV 151
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
HRLGRGTSGILLCAKTKLA+ +A++FAD TS V
Sbjct: 152 HRLGRGTSGILLCAKTKLARARLASHFADGTSHV 185
>gi|22331748|ref|NP_190794.2| RNA pseudourine synthase 5 [Arabidopsis thaliana]
gi|56744228|gb|AAW28554.1| At3g52260 [Arabidopsis thaliana]
gi|332645401|gb|AEE78922.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
Length = 294
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 112/157 (71%), Gaps = 26/157 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
T+ EFY TK+K+SAPL G +GS+LVY RLPWKEPD
Sbjct: 34 TVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDT 93
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS-HPVP 95
PY LEV YEDDDLIALNKPSGLQVLPGGLFQQRTVL QLQW K S + S+ S HPVP
Sbjct: 94 PYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVP 153
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVDA 132
VHRLGRGTSGILLCAKTKLAKT +AAYFA+ TS+V +
Sbjct: 154 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGS 190
>gi|449452164|ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
Length = 371
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 113/154 (73%), Gaps = 26/154 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
+LI FYS K+K+SAPL+G GS+LVY RLPWKEPD
Sbjct: 35 SLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKEPDT 94
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
PYLLE+ YED+++IALNKPSGLQVLPGG+FQQRTVL QLQW +SKQS S+S + HPVPV
Sbjct: 95 PYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEEL-HPVPV 153
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
HRLGRGTSGILLCAKTKLA+T AAYFA+ TS V
Sbjct: 154 HRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSV 187
>gi|449485927|ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
Length = 371
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 113/154 (73%), Gaps = 26/154 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
+LI FYS K+K+SAPL+G GS+LVY RLPWKEPD
Sbjct: 35 SLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKEPDT 94
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
PYLLE+ YED+++IALNKPSGLQVLPGG+FQQRTVL QLQW +SKQS S+S + HPVPV
Sbjct: 95 PYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEEL-HPVPV 153
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
HRLGRGTSGILLCAKTKLA+T AAYFA+ TS V
Sbjct: 154 HRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSV 187
>gi|17978940|gb|AAL47436.1| AT3g52260/T25B15_30 [Arabidopsis thaliana]
Length = 294
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 112/157 (71%), Gaps = 26/157 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
T+ EFY TK+K+SAPL G +GS+LVY RLPWKEPD
Sbjct: 34 TVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDT 93
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS-HPVP 95
PY LEV YEDDDLIALNKPSGLQVLPGGLFQQRTVL QLQW K S + S+ S HPVP
Sbjct: 94 PYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVP 153
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVDA 132
VHRLGRGTSGILLCAKTKLAKT +AAYFA+ TS+V +
Sbjct: 154 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGS 190
>gi|10045559|emb|CAC07917.1| putative protein [Arabidopsis thaliana]
Length = 376
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 111/155 (71%), Gaps = 26/155 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
T+ EFY TK+K+SAPL G +GS+LVY RLPWKEPD
Sbjct: 34 TVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDT 93
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS-HPVP 95
PY LEV YEDDDLIALNKPSGLQVLPGGLFQQRTVL QLQW K S + S+ S HPVP
Sbjct: 94 PYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVP 153
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
VHRLGRGTSGILLCAKTKLAKT +AAYFA+ TS+V
Sbjct: 154 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLV 188
>gi|42572641|ref|NP_974416.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
gi|229891781|sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA
pseudouridylate synthase 5; AltName: Full=RNA-uridine
isomerase 5
gi|332645400|gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
Length = 369
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 111/155 (71%), Gaps = 26/155 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
T+ EFY TK+K+SAPL G +GS+LVY RLPWKEPD
Sbjct: 34 TVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDT 93
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS-HPVP 95
PY LEV YEDDDLIALNKPSGLQVLPGGLFQQRTVL QLQW K S + S+ S HPVP
Sbjct: 94 PYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVP 153
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
VHRLGRGTSGILLCAKTKLAKT +AAYFA+ TS+V
Sbjct: 154 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLV 188
>gi|297819936|ref|XP_002877851.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323689|gb|EFH54110.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 387
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 111/155 (71%), Gaps = 26/155 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
T+ +FY TK+K+SAPL G +GS+LVYHRLPWKEPD
Sbjct: 37 TVSDFYFTKYKSSAPLLGWIQRIQNGQIQIDGEVVKDPNTLLRSGSKLVYHRLPWKEPDT 96
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS-HPVP 95
PY L+V YEDDDLIALNKPSGLQVLPGGLFQQRTVL QLQW K S S+ S HPVP
Sbjct: 97 PYSLQVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFRKNDSYTGSRESPHPVP 156
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
VHRLGRGTSGILLCAKTKLAKT +AAYFA+ TS+V
Sbjct: 157 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLV 191
>gi|334185927|ref|NP_001190071.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
gi|332645402|gb|AEE78923.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
Length = 416
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 12 KNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 71
K+ L +GS+LVY RLPWKEPD PY LEV YEDDDLIALNKPSGLQVLPGGLFQQRTV
Sbjct: 99 KDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTV 158
Query: 72 LKQLQWRASKQSSSLSSQAS-HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
L QLQW K S + S+ S HPVPVHRLGRGTSGILLCAKTKLAKT +AAYFA+ TS+V
Sbjct: 159 LTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLV 218
>gi|414866264|tpg|DAA44821.1| TPA: RNA binding protein [Zea mays]
Length = 243
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 105/153 (68%), Gaps = 29/153 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYST HK+SAPL G GS+LVYHR PW+EP
Sbjct: 50 TLIEFYSTNHKSSAPLPGWIKRIRNGQITVDGEVVTDPDMTLVDGSKLVYHRFPWQEPFA 109
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ----ASH 92
PYLLEV YEDDD++ALNKPSGLQVLP GLFQQRTVL QLQ + K +SS + SH
Sbjct: 110 PYLLEVLYEDDDMVALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMASSCRFKRKDVQSH 169
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
PVPVHRLGRGTSG+LLCAKTK+AK +A+YFA+
Sbjct: 170 PVPVHRLGRGTSGLLLCAKTKVAKVRLASYFAE 202
>gi|226724701|sp|Q0DST9.2|PUS5_ORYSJ RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA
pseudouridylate synthase 5; AltName: Full=RNA-uridine
isomerase 5
Length = 397
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 106/153 (69%), Gaps = 29/153 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYST +K+SAPL G GS+LVYHRLPW+EP
Sbjct: 51 TLIEFYSTSYKSSAPLPGWIKRIRDGQITVDGEVATDPDMILREGSKLVYHRLPWQEPFA 110
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ----ASH 92
P+LL+V YEDDD+IALNKPSGLQVLP GLFQQRTVL QLQ + K SS S+ SH
Sbjct: 111 PHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMPSSFCSKRKDAQSH 170
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
PVPVHRLGRGTSG+LLCAKTKLAK +AAYFA+
Sbjct: 171 PVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAE 203
>gi|218192587|gb|EEC75014.1| hypothetical protein OsI_11092 [Oryza sativa Indica Group]
Length = 461
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 107/156 (68%), Gaps = 29/156 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYST +K+SAPL G GS+LVYHRLPW+EP
Sbjct: 54 TLIEFYSTSYKSSAPLPGWIKRIRDGQITVCGEVATDPDIILREGSKLVYHRLPWQEPCA 113
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ----ASH 92
P+LL+V YEDDD+IALNKPSGLQVLP GLFQQRTVL QLQ + K SS S+ SH
Sbjct: 114 PHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMPSSFCSKRKDAQSH 173
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
PVPVHRLGRGTSG+LLCAKTKLAK +AAYFA+ +
Sbjct: 174 PVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAEGAT 209
>gi|222624713|gb|EEE58845.1| hypothetical protein OsJ_10432 [Oryza sativa Japonica Group]
Length = 458
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 107/156 (68%), Gaps = 29/156 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYST +K+SAPL G GS+LVYHRLPW+EP
Sbjct: 51 TLIEFYSTSYKSSAPLPGWIKRIRDGQITVDGEVATDPDMILREGSKLVYHRLPWQEPFA 110
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ----ASH 92
P+LL+V YEDDD+IALNKPSGLQVLP GLFQQRTVL QLQ + K SS S+ SH
Sbjct: 111 PHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMPSSFCSKRKDAQSH 170
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
PVPVHRLGRGTSG+LLCAKTKLAK +AAYFA+ +
Sbjct: 171 PVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAEGAT 206
>gi|195621906|gb|ACG32783.1| RNA binding protein [Zea mays]
Length = 379
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 105/153 (68%), Gaps = 29/153 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYST HK+SAPL G GS+LVYHR PW+EP
Sbjct: 41 TLIEFYSTNHKSSAPLPGWIKRIRNGQITVDGEVVTDPDMTLVDGSKLVYHRFPWQEPFA 100
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ----ASH 92
PYLLEV YEDDD++ALNKPSGLQVLP GLFQQRTVL QLQ + K +SS + SH
Sbjct: 101 PYLLEVLYEDDDMVALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMASSCRFKRKDVQSH 160
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
PVPVHRLGRGTSG+LLCAKTK+AK +A+YFA+
Sbjct: 161 PVPVHRLGRGTSGLLLCAKTKVAKVRLASYFAE 193
>gi|357120041|ref|XP_003561739.1| PREDICTED: RNA pseudourine synthase 5-like [Brachypodium
distachyon]
Length = 390
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 105/155 (67%), Gaps = 29/155 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYS +K+SAPL G GS+LVYHRL W+EP
Sbjct: 46 TLIEFYSDNYKSSAPLPGWIHRIRNGQITVDGQVVIDPEMILREGSKLVYHRLAWQEPLA 105
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ----ASH 92
P++L+V YEDDD++ALNKPSGLQVLP GLFQQRTVL QLQW+ K S S+ SH
Sbjct: 106 PHMLQVLYEDDDIVALNKPSGLQVLPKGLFQQRTVLAQLQWKEWKMPLSSCSKRKNVQSH 165
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
PVPVHRLGRGTSG+LLCAKTKLAK +A+YFA+ T
Sbjct: 166 PVPVHRLGRGTSGLLLCAKTKLAKVRLASYFAEGT 200
>gi|326499976|dbj|BAJ90823.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504092|dbj|BAK02832.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 389
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 103/153 (67%), Gaps = 29/153 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLI+FYS +K+SAPL G GS+LVYHRL WKEP
Sbjct: 45 TLIDFYSENYKSSAPLPGWIHRIRNGQITVDGQVVTDPDIILSEGSKLVYHRLSWKEPFA 104
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS----H 92
PYLL+V YEDDD++ALNKPSGLQVLP GLFQQRTVL QLQW+ K S S+ H
Sbjct: 105 PYLLQVLYEDDDMLALNKPSGLQVLPKGLFQQRTVLAQLQWKEWKMPPSSCSKKKNVQLH 164
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
PVPVHRLGRGTSG+LLCAKTKLAK +A+YFA+
Sbjct: 165 PVPVHRLGRGTSGLLLCAKTKLAKVQLASYFAE 197
>gi|108707582|gb|ABF95377.1| pseudouridine synthase family protein, putative, expressed [Oryza
sativa Japonica Group]
Length = 208
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/109 (73%), Positives = 90/109 (82%), Gaps = 4/109 (3%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
GS+LVYHRLPW+EP P+LL+V YEDDD+IALNKPSGLQVLP GLFQQRTVL QLQ +
Sbjct: 6 GSKLVYHRLPWQEPFAPHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDW 65
Query: 81 KQSSSLSSQ----ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
K SS S+ SHPVPVHRLGRGTSG+LLCAKTKLAK +AAYFA+
Sbjct: 66 KMPSSFCSKRKDAQSHPVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAE 114
>gi|294461273|gb|ADE76199.1| unknown [Picea sitchensis]
Length = 386
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 106/162 (65%), Gaps = 33/162 (20%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLI+FYS+++++SAP +G G +LVYHRL W+EP
Sbjct: 28 TLIDFYSSRYESSAPRKGWLQRIHNGQITVDGKTVNEPDTVLRIGPKLVYHRLSWREPIA 87
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS-------- 88
P L V +EDD L+A+NKPSGLQVLPGGLFQQRTVL QL+W+AS+ S S
Sbjct: 88 PCKLYVLFEDDHLLAVNKPSGLQVLPGGLFQQRTVLTQLKWKASQSSKYRSVAGKAVADF 147
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
Q S PVPVHRLGRGTSGILLCAK+++AK+ +AA FAD TS +
Sbjct: 148 QESQPVPVHRLGRGTSGILLCAKSEIAKSQLAADFADGTSFI 189
>gi|168061155|ref|XP_001782556.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665963|gb|EDQ52631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 100/165 (60%), Gaps = 37/165 (22%)
Query: 2 TLIEFYSTKHKNSAPLQG--------------------------AGSELVYHRLPWKEPD 35
+L+++YS K+K SA +G G LVY RLPW+EP+
Sbjct: 34 SLLDYYSAKYKESASEKGWLQRIQNGQQIRVDGNVITDPGFLLRDGVTLVYQRLPWREPE 93
Query: 36 VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ-----------SS 84
VPY L V YEDD L+A+NKPSGLQVLPGGLFQQRTVLKQL+W ++ SS
Sbjct: 94 VPYRLGVLYEDDHLVAINKPSGLQVLPGGLFQQRTVLKQLEWDNEEKEKHLQACLASVSS 153
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
S ++ P PVHRLGRGTSGILLCAK+ AK+ +AA A TSV
Sbjct: 154 SDETRLWKPAPVHRLGRGTSGILLCAKSPAAKSKLAADLAAGTSV 198
>gi|108707581|gb|ABF95376.1| pseudouridine synthase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|215694528|dbj|BAG89521.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 133
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 84/124 (67%), Gaps = 15/124 (12%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
GS+LVYHRLPW+EP P+LL+V YEDDD+IALNKPSGLQVLP GLFQQRTVL QLQ +
Sbjct: 6 GSKLVYHRLPWQEPFAPHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDW 65
Query: 81 KQSSSLSSQ----ASHPVPVHRLGRGTSGILLC-----------AKTKLAKTCIAAYFAD 125
K SS S+ SHPVPVHRLGRGTSG+ LC T+L+ + F D
Sbjct: 66 KMPSSFCSKRKDAQSHPVPVHRLGRGTSGLFLCFCSVHAQKPWSIDTQLSSSGCKFLFTD 125
Query: 126 KTSV 129
SV
Sbjct: 126 HQSV 129
>gi|115452369|ref|NP_001049785.1| Os03g0288500 [Oryza sativa Japonica Group]
gi|113548256|dbj|BAF11699.1| Os03g0288500, partial [Oryza sativa Japonica Group]
Length = 162
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 84/124 (67%), Gaps = 15/124 (12%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
GS+LVYHRLPW+EP P+LL+V YEDDD+IALNKPSGLQVLP GLFQQRTVL QLQ +
Sbjct: 35 GSKLVYHRLPWQEPFAPHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDW 94
Query: 81 KQSSSLSSQ----ASHPVPVHRLGRGTSGILLC-----------AKTKLAKTCIAAYFAD 125
K SS S+ SHPVPVHRLGRGTSG+ LC T+L+ + F D
Sbjct: 95 KMPSSFCSKRKDAQSHPVPVHRLGRGTSGLFLCFCSVHAQKPWSIDTQLSSSGCKFLFTD 154
Query: 126 KTSV 129
SV
Sbjct: 155 HQSV 158
>gi|302765707|ref|XP_002966274.1| hypothetical protein SELMODRAFT_168290 [Selaginella moellendorffii]
gi|300165694|gb|EFJ32301.1| hypothetical protein SELMODRAFT_168290 [Selaginella moellendorffii]
Length = 359
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 92/146 (63%), Gaps = 33/146 (22%)
Query: 3 LIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDVP 37
++E+Y++++++SA +G + LVYHR PW+EP P
Sbjct: 32 VLEYYASRYQSSASREGWLRRILKGQIEINGEVVTSPDALIRNNASLVYHRFPWEEPSAP 91
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
++LE+ YED+ L+A+NKPSGLQVLPGGLFQQRTVL QLQWR + Q + +HP PVH
Sbjct: 92 FMLEILYEDEHLLAINKPSGLQVLPGGLFQQRTVLSQLQWRVTDQ-----VERNHPTPVH 146
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYF 123
RLGRGTSG+ +C T L KT + YF
Sbjct: 147 RLGRGTSGVYVCG-TSLTKTFV--YF 169
>gi|255588073|ref|XP_002534494.1| hypothetical protein RCOM_0257760 [Ricinus communis]
gi|223525186|gb|EEF27888.1| hypothetical protein RCOM_0257760 [Ricinus communis]
Length = 104
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 63/74 (85%)
Query: 60 VLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
VLPGGLFQQRTVL QLQW A KQ+SSL+SQ S PVPVHRLGRGTSGILLCAK+K AK +
Sbjct: 10 VLPGGLFQQRTVLTQLQWLARKQTSSLASQGSQPVPVHRLGRGTSGILLCAKSKPAKAHL 69
Query: 120 AAYFADKTSVVDAD 133
AAYFAD TS++ D
Sbjct: 70 AAYFADGTSLIGED 83
>gi|158334165|ref|YP_001515337.1| RluA family pseudouridine synthase [Acaryochloris marina MBIC11017]
gi|158304406|gb|ABW26023.1| pseudouridine synthase, RluA family [Acaryochloris marina
MBIC11017]
Length = 306
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 32/149 (21%)
Query: 1 LTLIEFYSTKHKNSAPLQ-----------------------GAGSELVYHRLPWKEPDVP 37
LTL+EFY+ ++++S+ + G L YHR PW+EP VP
Sbjct: 18 LTLLEFYAQRYRHSSGTEWQVRIETGQVTIDGRQATPDTVLKQGQNLAYHRPPWQEPTVP 77
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
+V YED D++A++KPSGLQVLPGG F + T+L Q+Q R + + P P+H
Sbjct: 78 LTFDVLYEDADVLAIHKPSGLQVLPGGGFLEHTLLHQVQQRFPQGT---------PFPIH 128
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADK 126
RLGRGTSG++L A+++ A+ ++ ++
Sbjct: 129 RLGRGTSGVVLMARSQQARAALSQQMRNR 157
>gi|376004347|ref|ZP_09782061.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
gi|376004460|ref|ZP_09782157.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
gi|375327160|emb|CCE17910.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
gi|375327239|emb|CCE17814.1| pseudouridine synthase, RluA family [Arthrospira sp. PCC 8005]
Length = 309
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 9/98 (9%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG +L YHR PW EPDVP +V YED D++ + KPSGL V+PGG F + T+L+QLQ R
Sbjct: 61 AGQQLAYHRPPWSEPDVPLSFQVIYEDADILVIAKPSGLPVIPGGGFLEHTLLRQLQ-RE 119
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
Q + P+P+HRLGRGTSG++L A++ LA++
Sbjct: 120 YPQDT--------PIPIHRLGRGTSGLVLLARSTLARS 149
>gi|67924151|ref|ZP_00517595.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
gi|67854003|gb|EAM49318.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
Length = 302
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 34/141 (24%)
Query: 1 LTLIEFYSTKHKNSAPLQ------------------------GAGSELVYHRLPWKEPDV 36
LTLIE+Y TKH + + Q G L YHR PW+EP+V
Sbjct: 18 LTLIEYY-TKHYHHSNYQQWLERIISGQVLVDEQTVDPQTVLKTGQRLSYHRPPWQEPEV 76
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P E+ YEDD+L+ +NKPSGL VLPGG F + T+L W+ KQ + P+P+
Sbjct: 77 PLSFEIIYEDDNLLIVNKPSGLPVLPGGGFLEHTLL----WQLKKQYPQ-----NEPIPI 127
Query: 97 HRLGRGTSGILLCAKTKLAKT 117
HRLGRGTSG++L K+ +A++
Sbjct: 128 HRLGRGTSGLMLMGKSAIARS 148
>gi|416401986|ref|ZP_11687314.1| putative pseudouridine synthase [Crocosphaera watsonii WH 0003]
gi|357261969|gb|EHJ11175.1| putative pseudouridine synthase [Crocosphaera watsonii WH 0003]
Length = 302
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 34/141 (24%)
Query: 1 LTLIEFYSTKHKNSAPLQ------------------------GAGSELVYHRLPWKEPDV 36
LTLIE+Y TKH + + Q G L YHR PW+EP+V
Sbjct: 18 LTLIEYY-TKHYHHSNYQQWLERIISGQVLVDEQTVDPQTVLKTGQRLSYHRPPWQEPEV 76
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P E+ YEDD+L+ +NKPSGL VLPGG F + T+L W+ KQ + P+P+
Sbjct: 77 PLSFEIIYEDDNLLIVNKPSGLPVLPGGGFLEHTLL----WQLKKQYPQ-----NEPIPI 127
Query: 97 HRLGRGTSGILLCAKTKLAKT 117
HRLGRGTSG++L K+ +A++
Sbjct: 128 HRLGRGTSGLMLMGKSAIARS 148
>gi|443329468|ref|ZP_21058053.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
gi|442790806|gb|ELS00308.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
Length = 311
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 69/100 (69%), Gaps = 9/100 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L YHRLPW EP VP EV YED DL+A+ KP+GL VLPGG F Q T+L Q++ +
Sbjct: 63 GQKLAYHRLPWLEPTVPLDFEVIYEDPDLLAIAKPAGLPVLPGGGFLQNTLLWQIK-KIY 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
Q++ PVP+HRLGRGTSG+LL AK+ L K+ ++
Sbjct: 122 PQNT--------PVPIHRLGRGTSGLLLLAKSALGKSSLS 153
>gi|209523615|ref|ZP_03272169.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|423065904|ref|ZP_17054694.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
gi|209496020|gb|EDZ96321.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|406712662|gb|EKD07846.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
Length = 309
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 9/98 (9%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG +L YHR PW EPDVP +V YED D++ + KPSGL V+PGG F + T+L+QLQ R
Sbjct: 61 AGQQLAYHRPPWSEPDVPLSFQVIYEDADILVVAKPSGLPVIPGGGFLEHTLLRQLQ-RE 119
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
Q + P+P+HRLGRGTSG++L A++ L ++
Sbjct: 120 YPQDT--------PIPIHRLGRGTSGLVLLARSTLGRS 149
>gi|307154171|ref|YP_003889555.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7822]
gi|306984399|gb|ADN16280.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7822]
Length = 302
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 32/139 (23%)
Query: 1 LTLIEFYSTKHKNSAP-----------------------LQGAGSELVYHRLPWKEPDVP 37
LTLIE+Y+ K+ +S P L G +L YHR PW+EP+VP
Sbjct: 18 LTLIEYYTQKYSHSGPSEWLERIQSGQILIDGCSQDPQTLLQPGQKLTYHRPPWEEPEVP 77
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
EVFYEDD+++ + KPS L VLPGG F + T+L LQ + +++ P+PVH
Sbjct: 78 LSFEVFYEDDEVLVVAKPSLLPVLPGGGFLEHTLLSLLQQQYPQRT---------PIPVH 128
Query: 98 RLGRGTSGILLCAKTKLAK 116
RLGRGTSG++L A++ A+
Sbjct: 129 RLGRGTSGLVLLARSPHAR 147
>gi|409991924|ref|ZP_11275147.1| pseudouridine synthase [Arthrospira platensis str. Paraca]
gi|291570540|dbj|BAI92812.1| probable pseudouridine synthase [Arthrospira platensis NIES-39]
gi|409937215|gb|EKN78656.1| pseudouridine synthase [Arthrospira platensis str. Paraca]
Length = 309
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 9/98 (9%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG +L YHR PW EPDVP +V YED D++ + KPSGL V+PGG F + T+L+QLQ +
Sbjct: 61 AGQQLAYHRPPWNEPDVPLSFQVIYEDADILVVAKPSGLPVIPGGGFLEHTLLRQLQRKY 120
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
+ + P+P+HRLGRGTSG++L A++ + ++
Sbjct: 121 PQDT---------PIPIHRLGRGTSGLVLLARSTVGRS 149
>gi|220908619|ref|YP_002483930.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7425]
gi|219865230|gb|ACL45569.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425]
Length = 303
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 32/149 (21%)
Query: 1 LTLIEFYSTKHKNSAP-------------LQG----------AGSELVYHRLPWKEPDVP 37
LTL+++YS ++++++ L G AG +L YHR PW EP+VP
Sbjct: 19 LTLLDYYSQRYRHTSSAEWQTRIELGQIHLNGQPAPPTTRLQAGQQLTYHRPPWPEPEVP 78
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
E Y D DL+ ++KP+GL VLPGG F + T+L QLQ + +++ PVP+H
Sbjct: 79 LKFETIYSDADLLIISKPAGLPVLPGGGFLEHTLLWQLQQQYPQET---------PVPIH 129
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADK 126
RLGRGTSG+++ A + LAK+ ++ D+
Sbjct: 130 RLGRGTSGLMILAISGLAKSALSQQMRDQ 158
>gi|428225214|ref|YP_007109311.1| RluA family pseudouridine synthase [Geitlerinema sp. PCC 7407]
gi|427985115|gb|AFY66259.1| pseudouridine synthase, RluA family [Geitlerinema sp. PCC 7407]
Length = 318
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G L YHR PW EP VP V +ED+DL ++KPSGL VLPGG F + T+L QLQ R
Sbjct: 76 GQRLAYHRPPWVEPPVPLDFAVLHEDEDLWVVSKPSGLPVLPGGGFLEHTLLWQLQVRCP 135
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + PVP+HRLGRGTSG++L A++ LAK ++ D+
Sbjct: 136 RPT---------PVPIHRLGRGTSGLMLLARSPLAKAHLSQQMRDR 172
>gi|126657910|ref|ZP_01729063.1| probable pseudouridine synthase [Cyanothece sp. CCY0110]
gi|126620850|gb|EAZ91566.1| probable pseudouridine synthase [Cyanothece sp. CCY0110]
Length = 299
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 9/97 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G L YHR PWKEPDVP ++ YEDDDL+ +NKPSGL VLPGG F + T+L QL+ +
Sbjct: 61 GQWLSYHRTPWKEPDVPLNFDIIYEDDDLLVINKPSGLPVLPGGGFLEHTLLWQLKKQYP 120
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
K P+HRLGRGTSG+++ K+ +A++
Sbjct: 121 KDKV---------FPIHRLGRGTSGLMVMGKSAIARS 148
>gi|359463161|ref|ZP_09251724.1| pseudouridine synthase [Acaryochloris sp. CCMEE 5410]
Length = 306
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 32/143 (22%)
Query: 1 LTLIEFYSTKHKNSAPLQ-----------------------GAGSELVYHRLPWKEPDVP 37
LTL+EFY+ ++++S+ + G L YHR PW+EP VP
Sbjct: 18 LTLLEFYAQRYRHSSGTEWQARIETGQVTIDGRQATPDTVLKQGQNLAYHRPPWQEPTVP 77
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
+V YED D++A++KPSGL VLPGG F + T+L Q+Q + Q + P P+H
Sbjct: 78 LTFDVLYEDADVLAIHKPSGLPVLPGGGFLEHTLLHQVQ-QCFPQGT--------PFPIH 128
Query: 98 RLGRGTSGILLCAKTKLAKTCIA 120
RLGRGTSG++L A+++ A+ ++
Sbjct: 129 RLGRGTSGVVLMARSQQARAALS 151
>gi|302840927|ref|XP_002952009.1| pseudouridine synthase [Volvox carteri f. nagariensis]
gi|300262595|gb|EFJ46800.1| pseudouridine synthase [Volvox carteri f. nagariensis]
Length = 367
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G + Y R PW+EP P ++V YEDDD++AL KP+GLQVLP + QRTVL LQ
Sbjct: 77 GDVVSYTRRPWREPPSPSYVDVLYEDDDVVALCKPAGLQVLPAAMLHQRTVLTLLQHHYG 136
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + A PVHRLGRGTSG+LLCA+T A+ + + K
Sbjct: 137 NPPGTRACVAV--APVHRLGRGTSGLLLCARTTHARQRLTELMSGK 180
>gi|427417782|ref|ZP_18907965.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 7375]
gi|425760495|gb|EKV01348.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 7375]
Length = 347
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 66/101 (65%), Gaps = 11/101 (10%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG L YHR PW+EP VP + YEDD L+ +NKPSGL VLPGG F Q T+L QL
Sbjct: 112 AGQRLSYHRPPWQEPPVPLDIATIYEDDLLLVINKPSGLPVLPGGNFLQHTLLWQL---- 167
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+Q + ++ P+HRLGRGTSGILL AKTK A+ ++
Sbjct: 168 -RQHNPTAA------PIHRLGRGTSGILLIAKTKAARAHLS 201
>gi|218248702|ref|YP_002374073.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 8801]
gi|218169180|gb|ACK67917.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8801]
Length = 306
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 10/106 (9%)
Query: 15 APLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
PLQ G L YHR PW+EPDVP EV YED D++ + KPSGL VLPGG F + T+L Q
Sbjct: 57 TPLQ-PGQCLSYHRPPWQEPDVPLAFEVLYEDVDVLVVAKPSGLPVLPGGGFLEHTLLGQ 115
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
L+ +++ P P+HRLGRGTSG++L A++ LA + ++
Sbjct: 116 LKRLYPQET---------PTPIHRLGRGTSGLMLLARSPLAASHLS 152
>gi|257061765|ref|YP_003139653.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 8802]
gi|256591931|gb|ACV02818.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8802]
Length = 306
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 10/106 (9%)
Query: 15 APLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
PLQ G L YHR PW+EPDVP EV YED D++ + KPSGL VLPGG F + T+L Q
Sbjct: 57 TPLQ-PGQCLSYHRPPWQEPDVPLAFEVLYEDVDVLVVAKPSGLPVLPGGGFLEHTLLGQ 115
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
L+ +++ P P+HRLGRGTSG++L A++ LA + ++
Sbjct: 116 LKRLYPQET---------PTPIHRLGRGTSGLMLLARSPLAASHLS 152
>gi|254423098|ref|ZP_05036816.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7335]
gi|196190587|gb|EDX85551.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7335]
Length = 328
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 9/113 (7%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G L Y R PW+EP VP +V YED+DL +NKP+GL VLP G F + T+L QL+ R
Sbjct: 62 GQILSYARSPWEEPAVPLDFDVLYEDEDLWVINKPAGLPVLPSGGFLEHTLLYQLRVRYR 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVDAD 133
S+ PVHRLGRGTSG +L AK+ +AK ++ F +++ + ++
Sbjct: 122 DCQSA---------PVHRLGRGTSGAMLIAKSHIAKVQLSEQFRKRSANLSSN 165
>gi|172038568|ref|YP_001805069.1| pseudouridine synthase [Cyanothece sp. ATCC 51142]
gi|171700022|gb|ACB53003.1| probable pseudouridine synthase [Cyanothece sp. ATCC 51142]
Length = 304
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 9/98 (9%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
G L YHR PWKE DVP ++ YED ++ +NKPSGL VLPGG F + T+L QL+ +
Sbjct: 63 TGQWLSYHRPPWKEADVPLDFDLIYEDHHILVINKPSGLPVLPGGGFLEHTLLGQLKKQY 122
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
K+ P+HRLGRGTSG++L KT +A++
Sbjct: 123 PKEKV---------FPIHRLGRGTSGLMLMGKTAIARS 151
>gi|427723487|ref|YP_007070764.1| RluA family pseudouridine synthase [Leptolyngbya sp. PCC 7376]
gi|427355207|gb|AFY37930.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 7376]
Length = 303
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 9/97 (9%)
Query: 24 LVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS 83
L YHR PW EPD P E+ +E+ D + ++KPSGL VLPGG F + T+L QL+ ++
Sbjct: 65 LEYHRAPWDEPDAPLDYEILHEEADFLIIDKPSGLPVLPGGFFLENTLLHQLRKNFPDET 124
Query: 84 SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
P+P+HRLGRGTSG+++ A++ +AK ++
Sbjct: 125 ---------PIPIHRLGRGTSGLMILARSPVAKKNLS 152
>gi|354554091|ref|ZP_08973396.1| pseudouridine synthase, RluA family [Cyanothece sp. ATCC 51472]
gi|353553770|gb|EHC23161.1| pseudouridine synthase, RluA family [Cyanothece sp. ATCC 51472]
Length = 301
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 9/98 (9%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
G L YHR PWKE DVP ++ YED ++ +NKPSGL VLPGG F + T+L QL+ +
Sbjct: 60 TGQWLSYHRPPWKEADVPLDFDLIYEDHHILVINKPSGLPVLPGGGFLEHTLLGQLKKQY 119
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
K+ P+HRLGRGTSG++L KT +A++
Sbjct: 120 PKEKV---------FPIHRLGRGTSGLMLMGKTAIARS 148
>gi|318040646|ref|ZP_07972602.1| pseudouridine synthase [Synechococcus sp. CB0101]
Length = 349
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 14/118 (11%)
Query: 15 APLQGAGSELVYHRLPWKEPDVPYLLE--VFYEDDDLIALNKPSGLQVLPGGLFQQRTVL 72
APL AG LV+HR PW EP VP L E V ++D DL+ LNKPSGL VLP G F + T+L
Sbjct: 69 APLS-AGDRLVWHRPPWLEPAVPVLNEASVVFDDGDLLVLNKPSGLPVLPAGGFLEHTLL 127
Query: 73 KQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
QLQ A + PVHRLGR TSG+L+CA+ ++ ++A + T+
Sbjct: 128 AQLQGWAPEAR-----------PVHRLGRFTSGLLVCARRAESRAWLSAQLRESTAAA 174
>gi|254431229|ref|ZP_05044932.1| ribosomal large subunit pseudouridine synthase D [Cyanobium sp. PCC
7001]
gi|197625682|gb|EDY38241.1| ribosomal large subunit pseudouridine synthase D [Cyanobium sp. PCC
7001]
Length = 350
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +LV+HR PW EP VP L ++D DL+ L KP+GL VLP G + + TVL+ L+ +
Sbjct: 65 GDQLVWHRPPWLEPAVPDLPGPLFDDGDLLVLAKPAGLPVLPAGGYLEHTVLRLLERQV- 123
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
++ L + P PVHRLGR TSG+L+CA+ + ++ ++A D T+
Sbjct: 124 -RAGRLDGRFGLPRPVHRLGRFTSGLLVCARRRASRAWLSALLRDGTA 170
>gi|218442079|ref|YP_002380408.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
gi|218174807|gb|ACK73540.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7424]
Length = 308
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 32/139 (23%)
Query: 1 LTLIEFYSTKHKNSAPLQG-----------------------AGSELVYHRLPWKEPDVP 37
LT++++YS K+ +S P Q G +L YHR PW+EP P
Sbjct: 23 LTVLDYYSQKYPHSTPCQWFERITSGQVLLDGHSCNPHTRLITGQKLAYHRPPWEEPSAP 82
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
++ Y D D++ + KP+GL +LPGG F + T+L QL+ + + P P+H
Sbjct: 83 LNFDLLYSDSDVLVVAKPAGLPILPGGGFVEHTLLGQLKQHYPEDT---------PFPIH 133
Query: 98 RLGRGTSGILLCAKTKLAK 116
RLGRGTSG++L A++ A+
Sbjct: 134 RLGRGTSGLVLLARSSFAR 152
>gi|226357282|ref|YP_002787022.1| RNA pseudouridine synthase [Deinococcus deserti VCD115]
gi|226319272|gb|ACO47268.1| putative RNA pseudouridine synthase [Deinococcus deserti VCD115]
Length = 298
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 34/149 (22%)
Query: 1 LTLIEFYSTKHKNSAP------------------LQG-----AGSELVYHRLPWKEPDVP 37
+++++F ST++++SAP +QG AG LV+HR PW+E VP
Sbjct: 18 VSVLDFLSTRYRHSAPEVWAARLAQGEVQVDGLTVQGHERLRAGQTLVWHRPPWQEESVP 77
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
EV +ED L+A++KPSGL LPGG F + T+L + RA +S P+H
Sbjct: 78 LHFEVLHEDASLLAVHKPSGLPTLPGGGFLEHTLLTVV--RAQFPGAS---------PLH 126
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADK 126
RLGRGTSG++L A+T A + +A + ++
Sbjct: 127 RLGRGTSGVVLFARTGAAGSALARAWREQ 155
>gi|317968138|ref|ZP_07969528.1| pseudouridine synthase [Synechococcus sp. CB0205]
Length = 318
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 13/116 (11%)
Query: 20 AGSELVYHRLPWKEPDVPYLLE--VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
AG +L++HR PW+E VP L + V ++D DL+ LNKPSGL VLP G F + T+L QLQ
Sbjct: 67 AGDQLIWHRPPWEEAAVPVLSQRAVVFDDGDLLVLNKPSGLPVLPAGGFLEHTLLTQLQ- 125
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVDAD 133
+ A PVHRLGR TSG+L+CA+ + + ++A + T+ A
Sbjct: 126 ----------TWAPEARPVHRLGRFTSGLLVCARQRETRGQLSAQLRESTAASAAS 171
>gi|440756180|ref|ZP_20935381.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
TAIHU98]
gi|440173402|gb|ELP52860.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
TAIHU98]
Length = 303
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 9/97 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ + +
Sbjct: 62 GQQLTYQRPPWTEPDVPLFFEVLYEDTEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYA 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
+ + P P+HRLGRGTSGI+L AK+K A+
Sbjct: 122 EVT---------PYPIHRLGRGTSGIVLMAKSKPARA 149
>gi|159482266|ref|XP_001699192.1| pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158273039|gb|EDO98832.1| pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 303
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 65/129 (50%), Gaps = 34/129 (26%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFY++ H SA L G + Y RLPW EP
Sbjct: 33 TLIEFYTSVHPASANLSQWEVRIRNGQVAVNDVEAVEPTRVLRVGDVVSYRRLPWVEPPS 92
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P ++V YED D++AL+KPSGLQVLP +F QRTVL L+ R P PV
Sbjct: 93 PCHVDVVYEDADMVALSKPSGLQVLPAAMFHQRTVLSLLRRRQYLDV---------PAPV 143
Query: 97 HRLGRGTSG 105
HRLGRGTSG
Sbjct: 144 HRLGRGTSG 152
>gi|443668743|ref|ZP_21134235.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
DIANCHI905]
gi|159029331|emb|CAO90197.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330705|gb|ELS45400.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
DIANCHI905]
Length = 302
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 9/97 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ + +
Sbjct: 62 GQQLTYQRPPWTEPDVPLFFEVLYEDTEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYA 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
+ P P+HRLGRGTSGI+L AK+K A++
Sbjct: 122 DVT---------PYPIHRLGRGTSGIVLMAKSKPARS 149
>gi|124024405|ref|YP_001018712.1| pseudouridine synthase [Prochlorococcus marinus str. MIT 9303]
gi|123964691|gb|ABM79447.1| Pseudouridine synthase [Prochlorococcus marinus str. MIT 9303]
Length = 338
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 17 LQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
L +G ++ + R PW E VP EV ++D DL+ +NKPSGL V+PGG F T+ LQ
Sbjct: 73 LLASGDQVCWQRPPWLEAAVPASWEVIFDDGDLLVVNKPSGLPVIPGGGFLDHTLTGLLQ 132
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
R L ++ P PVHRLGR TSG+L+CA+ + + ++A F T+
Sbjct: 133 RRC-----QLDGESRLPRPVHRLGRFTSGLLICARQRETRAKLSAMFRRATA 179
>gi|425452940|ref|ZP_18832755.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|389765089|emb|CCI08978.1| putative enzyme [Microcystis aeruginosa PCC 7941]
Length = 302
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 9/96 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ + +
Sbjct: 62 GQQLTYQRPPWTEPDVPLFFEVLYEDTEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYA 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
+ + P P+HRLGRGTSGI+L AK+K A+
Sbjct: 122 EVT---------PYPIHRLGRGTSGIVLMAKSKPAR 148
>gi|425458962|ref|ZP_18838448.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389823449|emb|CCI28349.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 329
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 32/139 (23%)
Query: 1 LTLIEFYSTKHKNSAP-------LQGA----------------GSELVYHRLPWKEPDVP 37
L+L+ +Y+ K+ +S+P L A G +L Y R PW EPDVP
Sbjct: 45 LSLLAYYTGKYPHSSPEEWLDRILSAAILVNGRPAYPDTVLEIGQQLTYQRPPWTEPDVP 104
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
EV YED +++ + KPSGL VL GG F + T++ + + + P P+H
Sbjct: 105 LFFEVLYEDTEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYADVT---------PYPIH 155
Query: 98 RLGRGTSGILLCAKTKLAK 116
RLGRGTSGI+L AK+K A+
Sbjct: 156 RLGRGTSGIVLMAKSKPAR 174
>gi|33864307|ref|NP_895867.1| pseudouridine synthase [Prochlorococcus marinus str. MIT 9313]
gi|33641087|emb|CAE22216.1| Pseudouridine synthase [Prochlorococcus marinus str. MIT 9313]
Length = 338
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 17 LQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
L +G ++ + R PW E VP EV ++D DL+ +NKPSGL V+PGG F T+ LQ
Sbjct: 73 LLASGDQVCWQRPPWLEAAVPASWEVIFDDGDLLVVNKPSGLPVIPGGGFLDHTLTGLLQ 132
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
R L ++ P PVHRLGR TSG+L+CA+ + + ++A F T+
Sbjct: 133 RRC-----QLDGESRLPRPVHRLGRFTSGLLICARQRETRAKLSAMFRRATA 179
>gi|425434930|ref|ZP_18815394.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389675407|emb|CCH95464.1| putative enzyme [Microcystis aeruginosa PCC 9432]
Length = 308
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 9/96 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ + +
Sbjct: 62 GQQLTYQRPPWTEPDVPLFFEVLYEDTEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYA 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
+ + P P+HRLGRGTSGI+L AK+K A+
Sbjct: 122 EVT---------PYPIHRLGRGTSGIVLMAKSKPAR 148
>gi|16329580|ref|NP_440308.1| hypothetical protein slr1592 [Synechocystis sp. PCC 6803]
gi|383321321|ref|YP_005382174.1| hypothetical protein SYNGTI_0412 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383324491|ref|YP_005385344.1| hypothetical protein SYNPCCP_0412 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383490375|ref|YP_005408051.1| hypothetical protein SYNPCCN_0412 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384435641|ref|YP_005650365.1| hypothetical protein SYNGTS_0412 [Synechocystis sp. PCC 6803]
gi|451813739|ref|YP_007450191.1| hypothetical protein MYO_14170 [Synechocystis sp. PCC 6803]
gi|3915463|sp|P72970.1|Y1592_SYNY3 RecName: Full=Uncharacterized RNA pseudouridine synthase slr1592;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|1652063|dbj|BAA16988.1| slr1592 [Synechocystis sp. PCC 6803]
gi|339272673|dbj|BAK49160.1| hypothetical protein SYNGTS_0412 [Synechocystis sp. PCC 6803]
gi|359270640|dbj|BAL28159.1| hypothetical protein SYNGTI_0412 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359273811|dbj|BAL31329.1| hypothetical protein SYNPCCN_0412 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359276981|dbj|BAL34498.1| hypothetical protein SYNPCCP_0412 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|451779708|gb|AGF50677.1| hypothetical protein MYO_14170 [Synechocystis sp. PCC 6803]
Length = 291
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 10/112 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+ PLQ AG L Y R PW EP+VP L V + D+DL A++KPSGL VLPGG F TVL+
Sbjct: 36 TYPLQ-AGQTLTYWRSPWVEPEVPLQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLE 94
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
QL+ + ++S P+HRLG GTSG+LL ++ L + ++ F +
Sbjct: 95 QLKIQYPQESL---------FPLHRLGTGTSGLLLLGRSTLGRRELSRQFRE 137
>gi|407957461|dbj|BAM50701.1| hypothetical protein BEST7613_1770 [Synechocystis sp. PCC 6803]
Length = 317
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 10/110 (9%)
Query: 16 PLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
PLQ AG L Y R PW EP+VP L V + D+DL A++KPSGL VLPGG F TVL+QL
Sbjct: 64 PLQ-AGQTLTYWRSPWVEPEVPLQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQL 122
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ + ++S P+HRLG GTSG+LL ++ L + ++ F +
Sbjct: 123 KIQYPQESL---------FPLHRLGTGTSGLLLLGRSTLGRRELSRQFRE 163
>gi|285808641|gb|ADC36159.1| RluA family pseudouridine synthase [uncultured bacterium 162]
Length = 326
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
+G LV++R PW EPD P E+ ++D L+A+NKPSGL LPGG F + T+L+ +Q
Sbjct: 89 SGQTLVWNRPPWVEPDAPQHFEMLFDDPYLLAVNKPSGLPTLPGGGFMENTLLRLVQ--- 145
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+Q PVHRLGRGTSGI+L AKT A + A +
Sbjct: 146 --------NQCPSANPVHRLGRGTSGIVLFAKTPKAAAELCANW 181
>gi|116624899|ref|YP_827055.1| RluA family pseudouridine synthase [Candidatus Solibacter usitatus
Ellin6076]
gi|116228061|gb|ABJ86770.1| pseudouridine synthase, RluA family [Candidatus Solibacter usitatus
Ellin6076]
Length = 304
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 11/102 (10%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
+G L+++R PW EPDVP EV +ED L+A+NKPSGL LPGG F + T+L+ +Q
Sbjct: 61 SGQILIWNRPPWIEPDVPKHFEVLFEDPHLLAVNKPSGLPTLPGGGFLENTLLRLVQKHT 120
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
+ PVHRLGR TSGI+L A+T A + + A
Sbjct: 121 PNAN-----------PVHRLGRATSGIVLFARTPQAASNLFA 151
>gi|390440701|ref|ZP_10228912.1| putative enzyme [Microcystis sp. T1-4]
gi|389835989|emb|CCI33038.1| putative enzyme [Microcystis sp. T1-4]
Length = 303
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 9/100 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ + +
Sbjct: 62 GQQLSYQRPPWTEPDVPLFFEVLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYA 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+ + P P+HRLGRGTSGI+L AK+K A+ ++
Sbjct: 122 EVT---------PYPIHRLGRGTSGIVLMAKSKPARAKLS 152
>gi|427704069|ref|YP_007047291.1| 23S RNA-specific pseudouridylate synthase [Cyanobium gracile PCC
6307]
gi|427347237|gb|AFY29950.1| 23S RNA-specific pseudouridylate synthase [Cyanobium gracile PCC
6307]
Length = 352
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 11/122 (9%)
Query: 12 KNSAPLQG----AGSE-LVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLF 66
+N PL+ AG++ LV+ R PW EP VP V ++D DL+ ++KPSGL VLP G F
Sbjct: 70 RNGVPLRADAILAGADRLVWQRPPWPEPAVPAHWGVIHDDGDLLVIDKPSGLPVLPAGGF 129
Query: 67 QQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TVL+ L+ R + P PVHRLGR TSG+L+CA+ ++ ++A +
Sbjct: 130 LEHTVLRLLERRHGGDPGGV------PRPVHRLGRFTSGLLVCARRPASRAWLSAQLRES 183
Query: 127 TS 128
T
Sbjct: 184 TG 185
>gi|422302269|ref|ZP_16389632.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389788563|emb|CCI15712.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 303
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 9/96 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ + +
Sbjct: 62 GQQLTYQRPPWTEPDVPLFFEVLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYA 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
+ + P P+HRLGRGTSG++L AK+K A+
Sbjct: 122 EVT---------PYPIHRLGRGTSGLVLMAKSKPAR 148
>gi|425469485|ref|ZP_18848418.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389880753|emb|CCI38571.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 308
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 9/97 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ +
Sbjct: 62 GQQLTYQRPPWTEPDVPLFFEVLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYV 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
+ + P P+HRLGRGTSGI+L AK+K A+
Sbjct: 122 EVT---------PYPIHRLGRGTSGIVLMAKSKPARA 149
>gi|425440281|ref|ZP_18820586.1| Pseudouridine synthase [Microcystis aeruginosa PCC 9717]
gi|389719310|emb|CCH96824.1| Pseudouridine synthase [Microcystis aeruginosa PCC 9717]
Length = 352
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 32/139 (23%)
Query: 1 LTLIEFYSTKHKNSAP-------LQGA----------------GSELVYHRLPWKEPDVP 37
L+L+ +Y+ K+ +S+P L A G +L Y R PW EPDVP
Sbjct: 19 LSLLAYYAGKYPHSSPEEWLDRILSAAILVNGRPACPDTVLEIGQQLTYQRPPWTEPDVP 78
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
EV YED +++ + KPSGL VL GG F + T++ + + P P+H
Sbjct: 79 LFFEVLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYPDVT---------PYPIH 129
Query: 98 RLGRGTSGILLCAKTKLAK 116
RLGRGTSGI+L AK+K A+
Sbjct: 130 RLGRGTSGIVLMAKSKPAR 148
>gi|425467198|ref|ZP_18846482.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389830079|emb|CCI28148.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 299
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ +
Sbjct: 62 GQQLTYQRPPWTEPDVPLFFEVLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYP 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
+ P P+HRLGRGTSGI+L AK+K A+
Sbjct: 122 DVT---------PYPIHRLGRGTSGIVLMAKSKPAR 148
>gi|166364334|ref|YP_001656607.1| pseudouridine synthase [Microcystis aeruginosa NIES-843]
gi|166086707|dbj|BAG01415.1| pseudouridine synthase [Microcystis aeruginosa NIES-843]
Length = 299
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 9/96 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EP+VP EV YED +++ + KPSGL VL GG F + T++ + +
Sbjct: 62 GQQLTYQRPPWTEPEVPLFFEVLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYA 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
+ + P P+HRLGRGTSGI+L AK+K A+
Sbjct: 122 EVT---------PYPIHRLGRGTSGIVLMAKSKPAR 148
>gi|225872530|ref|YP_002753985.1| RluA family pseudouridine synthase [Acidobacterium capsulatum ATCC
51196]
gi|225792126|gb|ACO32216.1| pseudouridine synthase, RluA family [Acidobacterium capsulatum ATCC
51196]
Length = 301
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG LV++ PW EPD P +V +EDD+LIA+NKPSGL LPG F + T+L+ ++
Sbjct: 61 AGQVLVWNCPPWTEPDAPLHFDVLFEDDELIAVNKPSGLPTLPGSGFLENTLLRLVR--- 117
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
A H PVHRLGR TSGI+L +KT + A +
Sbjct: 118 --------RYAPHASPVHRLGRATSGIVLFSKTAQGAALLEAIW 153
>gi|374312271|ref|YP_005058701.1| RluA family pseudouridine synthase [Granulicella mallensis
MP5ACTX8]
gi|358754281|gb|AEU37671.1| pseudouridine synthase, RluA family [Granulicella mallensis
MP5ACTX8]
Length = 298
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 64/103 (62%), Gaps = 11/103 (10%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G LV+ R PW EPD P EV +D L+A+NKPSGL LPGG F + T+L+ +Q
Sbjct: 62 GQTLVWERPPWIEPDSPQHFEVLLDDSHLLAVNKPSGLPTLPGGGFMENTLLRLVQ---- 117
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
KQ+ + + PVHRLGR T+GI+L AKT A + ++A +
Sbjct: 118 KQNPNAN-------PVHRLGRATTGIVLFAKTPQAASQLSANW 153
>gi|425454272|ref|ZP_18834018.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389805109|emb|CCI15333.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 302
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 9/100 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G +L Y R PW EPDVP EV YED +++ + KPSGL VL GG F + T++ +
Sbjct: 62 GQQLTYQRPPWIEPDVPLFFEVLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYP 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+ + P P+HRLGRGTSG++L AK+K A+ ++
Sbjct: 122 EVT---------PYPIHRLGRGTSGLVLMAKSKPARAKLS 152
>gi|15806687|ref|NP_295407.1| pseudouridine synthase [Deinococcus radiodurans R1]
gi|6459452|gb|AAF11241.1|AE002010_4 pseudouridine synthase, putative [Deinococcus radiodurans R1]
Length = 321
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 11/99 (11%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G LV+ R PW EPD P +V YED DL+A++KPSGL +PGG F + T+L Q++ R
Sbjct: 84 GQMLVWQRPPWAEPDAPLHFDVIYEDADLLAVSKPSGLPTMPGGGFLEHTLLHQVRGRWP 143
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
S P+HRLGRGTSG++L + T A +
Sbjct: 144 DAS-----------PLHRLGRGTSGLVLFSLTSQAGAAL 171
>gi|116073981|ref|ZP_01471243.1| probable pseudouridine synthase [Synechococcus sp. RS9916]
gi|116069286|gb|EAU75038.1| probable pseudouridine synthase [Synechococcus sp. RS9916]
Length = 333
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G + +HR PW E VP + ++D DL+ +NKPSGL V+PGG F T+ L+ R+
Sbjct: 77 GERISWHRPPWLEAAVPDQWQTIHDDGDLLVINKPSGLPVMPGGGFLLHTLTALLEQRSR 136
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
++ SL+ P PVHRLGR TSG+ +CA+ + ++A+F
Sbjct: 137 ERGESLA-----PKPVHRLGRFTSGLQVCARRPETRAALSAHF 174
>gi|425448439|ref|ZP_18828397.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389730767|emb|CCI05077.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 299
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 32/140 (22%)
Query: 1 LTLIEFYSTKHKNSAP-------------LQGA----------GSELVYHRLPWKEPDVP 37
L+L+ +Y+ K+ +S+P + G+ G +L Y R PW EPDVP
Sbjct: 19 LSLLAYYAGKYPHSSPEEWLDRILSAAILVNGSPAGPDTVLEIGQQLTYQRPPWTEPDVP 78
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
E YED +++ + KPSGL VL GG F + T++ + + + P P+H
Sbjct: 79 LFFERLYEDAEVLVVAKPSGLPVLAGGGFLEHTLIHLVHQHYPEVT---------PYPIH 129
Query: 98 RLGRGTSGILLCAKTKLAKT 117
RLGRGTSG++L AK+K A+
Sbjct: 130 RLGRGTSGLVLMAKSKPARA 149
>gi|386857499|ref|YP_006261676.1| Pseudouridine synthase, RluA family [Deinococcus gobiensis I-0]
gi|380001028|gb|AFD26218.1| Pseudouridine synthase, RluA family [Deinococcus gobiensis I-0]
Length = 300
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 11/91 (12%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G E+V+HR PW+EPD P V +ED L+A+ KP+GL LPGG F + T+L+++ RA
Sbjct: 61 GQEVVWHRPPWEEPDAPLEFGVLFEDASLLAVTKPAGLPTLPGGGFYEHTLLRRV--RAQ 118
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAK 111
+S P+HRLGRGTSG++L A+
Sbjct: 119 FPGAS---------PLHRLGRGTSGLVLFAR 140
>gi|170078760|ref|YP_001735398.1| putative pseudouridine synthase [Synechococcus sp. PCC 7002]
gi|169886429|gb|ACB00143.1| putative pseudouridine synthase [Synechococcus sp. PCC 7002]
Length = 282
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 60/97 (61%), Gaps = 9/97 (9%)
Query: 23 ELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
L YHR PW+EPDVP ++ ++D ++KP+GL VLP G F + T+L QL+ + +
Sbjct: 43 RLEYHRPPWEEPDVPLNFQILHQDPHFWIIDKPAGLPVLPAGNFLENTLLAQLKRQFPDE 102
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
+ PVP+HRLGRGTSG+++ ++ L + +
Sbjct: 103 T---------PVPIHRLGRGTSGLMILGRSPLGRQSL 130
>gi|87300869|ref|ZP_01083711.1| Pseudouridine synthase [Synechococcus sp. WH 5701]
gi|87284740|gb|EAQ76692.1| Pseudouridine synthase [Synechococcus sp. WH 5701]
Length = 328
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 8/109 (7%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG L + R PW+E VP V ++D DL ++KPSGL VLP G F + T+L+ L+
Sbjct: 66 AGDRLQWQRPPWREEAVPARWRVIHDDGDLYVIDKPSGLPVLPAGGFLEHTLLRLLE--- 122
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
S ++QA P PVHRLGR TSG+L+CA+ ++ ++A + T+
Sbjct: 123 ----RSCAAQAL-PRPVHRLGRHTSGLLVCARRPQSRAWLSARLRESTA 166
>gi|116750307|ref|YP_846994.1| RluA family pseudouridine synthase [Syntrophobacter fumaroxidans
MPOB]
gi|116699371|gb|ABK18559.1| pseudouridine synthase, RluA family [Syntrophobacter fumaroxidans
MPOB]
Length = 300
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 11/101 (10%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G L + R PW+EPDVP V + D+DL+A+ KP GL +P G F T+L ++ RA
Sbjct: 63 GQWLAWRRPPWEEPDVPLAYAVLHADEDLLAVAKPRGLPTVPAGGFLDNTLLALVR-RAC 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
+++ PVHRLGRGTSGI+L A+T A++ +AA
Sbjct: 122 PEAT----------PVHRLGRGTSGIVLLARTARARSVLAA 152
>gi|87123579|ref|ZP_01079430.1| probable pseudouridine synthase [Synechococcus sp. RS9917]
gi|86169299|gb|EAQ70555.1| probable pseudouridine synthase [Synechococcus sp. RS9917]
Length = 314
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG + + R PW EP +P + ++D D++ +NKPSGL V+P G F T+ QL +
Sbjct: 50 AGDRIRWQRPPWVEPAIPEHWQTLHDDGDVLVINKPSGLPVMPAGGFLVHTLSHQLVLWS 109
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+Q L+ P PVHRLGR TSG+L+CA+ ++ ++ D T+
Sbjct: 110 REQGEPLA-----PKPVHRLGRFTSGLLVCARRPESRAWLSRLLRDSTA 153
>gi|443318893|ref|ZP_21048135.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
gi|442781531|gb|ELR91629.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
Length = 309
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 32/143 (22%)
Query: 1 LTLIEFYSTKHKNSAP------LQGA--------GSE---------LVYHRLPWKEPDVP 37
LTL+++YS ++ +S+ +Q GSE L YHR PW+EP P
Sbjct: 18 LTLLDYYSQRYPHSSRGEWCDRIQSGQVEVDGRQGSEEAILKPRQRLAYHRPPWEEPPAP 77
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
V YED DL+ ++KP+GL VLPGG F T+L QL+ +++ PVP+H
Sbjct: 78 LNFGVLYEDGDLLVVDKPAGLPVLPGGGFLNHTLLHQLRQHYPQET---------PVPIH 128
Query: 98 RLGRGTSGILLCAKTKLAKTCIA 120
RLGRGTSG+LL ++ LAK+ ++
Sbjct: 129 RLGRGTSGLLLLGRSSLAKSVLS 151
>gi|429218354|ref|YP_007179998.1| RluA family pseudouridine synthase [Deinococcus peraridilitoris DSM
19664]
gi|429129217|gb|AFZ66232.1| pseudouridine synthase, RluA family [Deinococcus peraridilitoris
DSM 19664]
Length = 302
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 11/108 (10%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG LV+HR PW+E P EV +EDD L+A+NKP GL LPG + + T+L+ ++ R
Sbjct: 62 AGQILVWHRPPWQEHKAPRHYEVLFEDDVLLAVNKPGGLPTLPGAGYLENTLLQLVRAR- 120
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
H P+HRLGR TSG++L A+T A ++ + D+
Sbjct: 121 ----------TPHAAPLHRLGRATSGLVLFARTPQAAAQLSRAWRDRA 158
>gi|148240644|ref|YP_001226031.1| pseudouridylate synthase [Synechococcus sp. WH 7803]
gi|147849183|emb|CAK24734.1| Pseudouridylate synthase [Synechococcus sp. WH 7803]
Length = 314
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 12 KNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 71
+N P+ G+ + + R PW EP +P V Y+D D++ +NKPSGL V+PGG F Q T+
Sbjct: 61 QNDVPV-GSKDVVQWRRPPWLEPAIPDRWSVVYDDGDVLVINKPSGLPVMPGGGFLQHTL 119
Query: 72 LKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
L ++S L+ + P PVHRLGR TSG+ +CA+ + ++ F
Sbjct: 120 SALLM-----ETSRLAGSSQAPKPVHRLGRFTSGLQVCARRPQTRARLSRQF 166
>gi|325282268|ref|YP_004254809.1| pseudouridine synthase, RluA family [Deinococcus proteolyticus MRP]
gi|324314077|gb|ADY25192.1| pseudouridine synthase, RluA family [Deinococcus proteolyticus MRP]
Length = 305
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 15/103 (14%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL--QWR 78
G L +HR PW E VP V YED ++A++KPSGL LP G F T+L L QW
Sbjct: 67 GDRLAWHRPPWAEEAVPLHFSVLYEDAHILAVHKPSGLPTLPAGGFLDHTLLALLRRQWP 126
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
A+ P+HRLGRGTSG++LC+ T A + + A
Sbjct: 127 AA-------------TPLHRLGRGTSGLVLCSLTPAAGSRLTA 156
>gi|322435857|ref|YP_004218069.1| pseudouridine synthase [Granulicella tundricola MP5ACTX9]
gi|321163584|gb|ADW69289.1| pseudouridine synthase, RluA family [Granulicella tundricola
MP5ACTX9]
Length = 297
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 11/105 (10%)
Query: 17 LQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
L +G LV+ R W EPD P EV ++D L+A+NKPSGL LPGG F + T+L+ +
Sbjct: 58 LLSSGQILVWKRPAWIEPDAPQHFEVLFDDLHLLAVNKPSGLPTLPGGGFLENTLLRLVH 117
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
+ S S + PVHRLGR T+GI++ AKT A + A
Sbjct: 118 ----RHSPSAN-------PVHRLGRATTGIVMFAKTAQAAAGLTA 151
>gi|88809883|ref|ZP_01125389.1| probable pseudouridine synthase [Synechococcus sp. WH 7805]
gi|88786267|gb|EAR17428.1| probable pseudouridine synthase [Synechococcus sp. WH 7805]
Length = 298
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 12 KNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 71
+N P+ G+ + + R PW EP +P V Y+D D++ +NKPSGL V+PGG F Q T
Sbjct: 35 QNDVPV-GSRDVVQWRRPPWLEPAIPDQWSVVYDDGDVLVINKPSGLPVMPGGGFLQHT- 92
Query: 72 LKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
L L AS+ S+ +SQ P PVHRLGR TSG+ +CA+ + ++ F
Sbjct: 93 LSALLMEASR--SAGASQV--PKPVHRLGRFTSGLQVCARRPQTRAELSRQF 140
>gi|352095526|ref|ZP_08956540.1| pseudouridine synthase [Synechococcus sp. WH 8016]
gi|351678668|gb|EHA61813.1| pseudouridine synthase [Synechococcus sp. WH 8016]
Length = 327
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G + + R PW E VP EV ++D DL+ +NKPSGL V+PGG F T+ L+ R+
Sbjct: 72 GDWIRWQRPPWVEAAVPDQWEVIHDDGDLLVVNKPSGLPVMPGGGFLAHTLTSLLERRSR 131
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
SL P P+HRLGR TSG+ +CA+ + ++ F
Sbjct: 132 SVGESLV-----PKPIHRLGRFTSGLQVCARRPETRAALSKQF 169
>gi|108762448|ref|YP_633384.1| RluA family pseudouridine synthase [Myxococcus xanthus DK 1622]
gi|108466328|gb|ABF91513.1| pseudouridine synthase, RluA family [Myxococcus xanthus DK 1622]
Length = 303
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 13 NSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVL 72
S PL+ G L +HR PW+E D P E+ YED +L+ + KPSGL LP G F + T+L
Sbjct: 57 GSEPLR-PGQWLCWHRPPWEEADTPQSFELVYEDAELVVVVKPSGLPTLPSGGFLKNTLL 115
Query: 73 KQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
+Q R + VP+HRLGR TSG++L +T+ A +A+
Sbjct: 116 SFVQARWPEA-----------VPMHRLGRATSGLVLFTRTRDAAARLAS 153
>gi|373485937|ref|ZP_09576617.1| pseudouridine synthase, RluA family [Holophaga foetida DSM 6591]
gi|372012775|gb|EHP13337.1| pseudouridine synthase, RluA family [Holophaga foetida DSM 6591]
Length = 293
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 11/100 (11%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G L + R PW+EP+VP V YED DL+A+ KPSGL LPG F + T+L Q++ R
Sbjct: 62 GQILTWSRPPWEEPEVPLDYGVIYEDADLVAVAKPSGLPTLPGAGFLEHTLLHQVRLRFP 121
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
P+HRLGR TSGI++ A++ A+ ++
Sbjct: 122 GAD-----------PIHRLGRTTSGIVVFARSPGARKSLS 150
>gi|113955599|ref|YP_731829.1| pseudouridine synthase [Synechococcus sp. CC9311]
gi|113882950|gb|ABI47908.1| Pseudouridine synthase [Synechococcus sp. CC9311]
Length = 327
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG + + R PW E VP LEV ++D D++ +NKPSGL V+PGG F T+ L+
Sbjct: 71 AGDWIRWARPPWVEAAVPDQLEVIHDDGDVLVVNKPSGLPVMPGGGFLVHTLTSLLE--- 127
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+SS + P P+HRLGR TSG+ +CA+ + ++ F
Sbjct: 128 --RSSRSVGEVLVPKPIHRLGRFTSGLQVCARRPETRAALSKQF 169
>gi|405368746|ref|ZP_11026567.1| ribosomal large subunit pseudouridine synthase D [Chondromyces
apiculatus DSM 436]
gi|397089459|gb|EJJ20376.1| ribosomal large subunit pseudouridine synthase D [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 301
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 13 NSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVL 72
S PL+ G L +HR PW+E D P E YED +L+ + KPSGL LP G F + T+L
Sbjct: 55 GSEPLR-PGQWLCWHRPPWEEADTPQSFERVYEDAELVVVVKPSGLPTLPSGGFLKNTLL 113
Query: 73 KQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
+Q R + VP+HRLGR TSG++L +T+ A +A+
Sbjct: 114 SFVQERWPEA-----------VPMHRLGRATSGLVLFTRTRDAAARLAS 151
>gi|338536438|ref|YP_004669772.1| pseudouridine synthase [Myxococcus fulvus HW-1]
gi|337262534|gb|AEI68694.1| pseudouridine synthase [Myxococcus fulvus HW-1]
Length = 301
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 13 NSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVL 72
S PL+ G L +HR PW+E D P E+ YED +L+ + KPSGL LP G F + T+L
Sbjct: 55 GSEPLR-PGQWLCWHRPPWEEEDTPRSFELVYEDAELVVVVKPSGLPTLPSGGFLKNTLL 113
Query: 73 KQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+Q R + VP HRLGR TSG++L +T+ A +A
Sbjct: 114 SFVQARWPEA-----------VPRHRLGRATSGLVLFTRTREAAARLA 150
>gi|148243361|ref|YP_001228518.1| pseudouridylate synthases, 23S RNA-specific [Synechococcus sp.
RCC307]
gi|147851671|emb|CAK29165.1| Pseudouridylate synthases, 23S RNA-specific [Synechococcus sp.
RCC307]
Length = 323
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 18/104 (17%)
Query: 13 NSAPLQGA-----GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
N AP+Q EL++ R PW EP +P E +D DL+ +NKPSGL V+PGG F
Sbjct: 56 NGAPVQAEQVLQRDDELLWQRPPWLEPAIPDQWETIVDDGDLLVINKPSGLPVMPGGGFL 115
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAK 111
Q T+ L+ +K PVHRLGR TSG+ +CA+
Sbjct: 116 QHTLTALLEPTGAK-------------PVHRLGRFTSGLQVCAR 146
>gi|94986325|ref|YP_605689.1| pseudouridine synthase [Deinococcus geothermalis DSM 11300]
gi|94556606|gb|ABF46520.1| Pseudouridine synthase, RluD [Deinococcus geothermalis DSM 11300]
Length = 301
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G L +HR PW+E D P V Y D L+A+ KPSGL LPGG F + T+L Q++
Sbjct: 63 GQVLEWHRPPWEEEDAPLDFAVVYRDAALLAVAKPSGLPTLPGGGFLKHTLLAQVR---- 118
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+ P+HRLGRGTSG++L A+T A +A
Sbjct: 119 -------TDFPEARPLHRLGRGTSGLVLFARTHEAGAILA 151
>gi|116072039|ref|ZP_01469307.1| probable pseudouridine synthase [Synechococcus sp. BL107]
gi|116065662|gb|EAU71420.1| probable pseudouridine synthase [Synechococcus sp. BL107]
Length = 315
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 18/118 (15%)
Query: 11 HKNSAPLQG-----AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGL 65
H+N PL+G +G E+ + R PW E +P + ++D DL+ +NKPSGL V+PGG
Sbjct: 62 HRNGEPLRGDTQLASGDEIRWQRPPWLEEAIPDQWDTIHDDGDLLVINKPSGLPVMPGGG 121
Query: 66 FQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
F + T+ L +K PVHRLGR TSG+ +CA+T + ++ F
Sbjct: 122 FLEHTLTALLASTGAK-------------PVHRLGRFTSGLQVCARTAATRAALSKQF 166
>gi|78185673|ref|YP_378107.1| pseudouridine synthase [Synechococcus sp. CC9902]
gi|78169967|gb|ABB27064.1| probable pseudouridine synthase [Synechococcus sp. CC9902]
Length = 315
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 11 HKNSAPLQG-----AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGL 65
H+N PL G +G ++ + R PW E +P + ++D DL+ +NKPSGL V+PGG
Sbjct: 62 HRNGEPLAGDMQLTSGDDICWQRPPWLEEAIPDQWDTIHDDGDLLVINKPSGLPVMPGGG 121
Query: 66 FQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
F + T+ L +K PVHRLGR TSG+ +CA+T + ++ F
Sbjct: 122 FLEHTLTALLASTGAK-------------PVHRLGRFTSGLQVCARTAATRAALSKQF 166
>gi|260434982|ref|ZP_05788952.1| pseudouridylate synthase, 23S RNA-specific [Synechococcus sp. WH
8109]
gi|260412856|gb|EEX06152.1| pseudouridylate synthase, 23S RNA-specific [Synechococcus sp. WH
8109]
Length = 248
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
G L + R PW E +P E ++D DL+ +NKPSGL V+PGG F + T+ L
Sbjct: 69 GGETLFWRRPPWLEQAIPDQWETIHDDGDLLVINKPSGLPVMPGGGFLRHTLTALL---- 124
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+ + +PVHRLGR TSG+ +CA+T + + F
Sbjct: 125 ---------EHAGALPVHRLGRFTSGLQVCARTPQTRALWSKQF 159
>gi|33866818|ref|NP_898377.1| pseudouridine synthase [Synechococcus sp. WH 8102]
gi|33639419|emb|CAE08803.1| probable pseudouridine synthase [Synechococcus sp. WH 8102]
Length = 315
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
G +++ R PW E +P E ++D DL+ +NKPSGL V+PGG F T+ L+
Sbjct: 65 GGEAVLWRRPPWLEEAIPDQWETIHDDGDLLVINKPSGLPVMPGGGFLLHTLTALLEPTG 124
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
++ PVHRLGR TSG+ +CA+ + + ++ F + S
Sbjct: 125 AR-------------PVHRLGRFTSGLQVCARDPMTRAALSKQFRPEGS 160
>gi|383457934|ref|YP_005371923.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
gi|380734159|gb|AFE10161.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
Length = 308
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A EL +HR PW+E + P E+ YED L+A+ KPSGL LP G F + T+L ++ R
Sbjct: 69 AHQELCWHRPPWRERETPDSFELVYEDASLLAVIKPSGLPTLPSGGFLKNTLLSFVRLRW 128
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ S+ +HRLGR TSG++L ++T+ A ++ + +
Sbjct: 129 PEASA-----------LHRLGRATSGLVLFSRTQEAAAKLSGNWRE 163
>gi|78213934|ref|YP_382713.1| pseudouridine synthase [Synechococcus sp. CC9605]
gi|78198393|gb|ABB36158.1| probable pseudouridine synthase [Synechococcus sp. CC9605]
Length = 315
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 17 LQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
LQG G L + R PW E +P + ++D DL+ +NKPSGL V+PGG F + T++ L+
Sbjct: 63 LQG-GEALCWRRPPWLEEAIPDQWDTIHDDGDLLVINKPSGLPVMPGGGFLRHTLMALLE 121
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
++ PVHRLGR TSG+ +CA T + + F
Sbjct: 122 PTGAR-------------PVHRLGRFTSGLQVCACTPQTRALWSKQF 155
>gi|320332730|ref|YP_004169441.1| RluA family pseudouridine synthase [Deinococcus maricopensis DSM
21211]
gi|319754019|gb|ADV65776.1| pseudouridine synthase, RluA family [Deinococcus maricopensis DSM
21211]
Length = 318
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 16/110 (14%)
Query: 13 NSAPLQG-----AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
+ AP+ G AG LV++R PW E P ++ Y DD L+A+ KPSGL + GG F
Sbjct: 68 DGAPIDGHEILQAGQVLVWNRPPWDEEATPRTFDIAYLDDALLAVIKPSGLPTMHGGGFL 127
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
+ T+L S + +Q P+HRLGR TSG++L A+T A +
Sbjct: 128 ENTLL-----------SLVRAQHPEATPLHRLGRATSGLVLFARTHAAAS 166
>gi|115375687|ref|ZP_01462942.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|310821153|ref|YP_003953511.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|115367335|gb|EAU66315.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|309394225|gb|ADO71684.1| Pseudouridine synthase, RluA family [Stigmatella aurantiaca
DW4/3-1]
Length = 298
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G LV++R PW+E + P + Y D+ ++A++KP GL +PGG F T+L ++ R
Sbjct: 63 GQRLVWNRPPWEEKETPRDYTLVYADEAILAVDKPGGLPTMPGGGFLVNTLLHVVRERFP 122
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKT 112
+ S P+HRLGRGTSG++L A+T
Sbjct: 123 EVS-----------PLHRLGRGTSGLVLFART 143
>gi|444915168|ref|ZP_21235304.1| Ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
gi|444713750|gb|ELW54642.1| Ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
Length = 298
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 11/93 (11%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG LV++R PW+E + P + +ED+ L+A+ KP GL +PGG F T+L ++ R
Sbjct: 62 AGQWLVWNRPPWEEKETPRDYSLVHEDEALLAVIKPGGLPTVPGGGFLVNTLLFLVRERF 121
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKT 112
+ S P+HRLGRGTSG++L A+T
Sbjct: 122 PEAS-----------PLHRLGRGTSGLVLFART 143
>gi|424744240|ref|ZP_18172538.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-141]
gi|422942979|gb|EKU38010.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-141]
Length = 292
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 15 APLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
+P QG + + Y+R EP VP+ + +E+DDL+ ++KP L + P G + Q T+L +
Sbjct: 58 SPYQG-NTHIFYYRFLAYEPHVPFEHRILFENDDLLVVDKPHFLTISPTGQYVQETLLVR 116
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L+ + S +S + P+HRL R T+G++L K ++ FA++
Sbjct: 117 LKKQTSNESLT---------PIHRLDRETAGVVLFCKRVESRGVYQQLFAER 159
>gi|320109289|ref|YP_004184879.1| RluA family pseudouridine synthase [Terriglobus saanensis SP1PR4]
gi|319927810|gb|ADV84885.1| pseudouridine synthase, RluA family [Terriglobus saanensis SP1PR4]
Length = 298
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 11/102 (10%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
+G LV++R PW EPD P EV +D L+A+NKP GL LPGG F + T+L+ +Q
Sbjct: 61 SGQMLVWNRPPWIEPDAPQHFEVLLDDPHLLAVNKPGGLPTLPGGGFMENTLLRLVQ--- 117
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
KQS + PVHRLGR T+GI+L AKT A + + A
Sbjct: 118 -KQSPDAN-------PVHRLGRATTGIVLFAKTPQAASNLTA 151
>gi|339021492|ref|ZP_08645543.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter tropicalis NBRC 101654]
gi|338751473|dbj|GAA08847.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter tropicalis NBRC 101654]
Length = 436
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 20 AGSELVYHRLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
AG ELV H +P P VP E+FYEDDDLI LNKP+GL V P + T++ L
Sbjct: 168 AGMELVLH-IPPATPAVPQGEAVPFEIFYEDDDLIVLNKPAGLVVHPAPGNETGTLVNGL 226
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + + P VHRL + TSG+++ AKT+ A ++ FA +
Sbjct: 227 IAHCGESLKGIGGE-RRPGIVHRLDKDTSGLMVAAKTEKAHLALSDDFAAR 276
>gi|452910377|ref|ZP_21959058.1| ribosomal large subunit pseudouridine synthase D type protein
[Kocuria palustris PEL]
gi|452834624|gb|EME37424.1| ribosomal large subunit pseudouridine synthase D type protein
[Kocuria palustris PEL]
Length = 309
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 18 QGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
Q AG + YHR EP++P+ + V YED+ L+A++KP GL P G F +T L L+
Sbjct: 69 QCAGQRVWYHRELPVEPELPHDMPVLYEDEWLLAVDKPHGLPSTPRGGFIAQTALSVLRR 128
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
R + VP HRL R T+G+LL + A+ + F D+ +
Sbjct: 129 RRGEDDL---------VPAHRLDRDTAGVLLLIRDPRARGAVQRQFQDRRT 170
>gi|333377526|ref|ZP_08469260.1| hypothetical protein HMPREF9456_00855 [Dysgonomonas mossii DSM
22836]
gi|332884260|gb|EGK04528.1| hypothetical protein HMPREF9456_00855 [Dysgonomonas mossii DSM
22836]
Length = 355
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YED+DL+ +NKP GL V PG Q T++ + +R K + S+
Sbjct: 103 DIP--LDVVYEDEDLMVINKPPGLVVHPGFGNYQGTMVNAIAYRL-KDTPEYDSKDPRLG 159
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG++L AK AKT ++A F +KT+
Sbjct: 160 IVHRIDKDTSGLILVAKNAYAKTHLSAQFFNKTT 193
>gi|282859073|ref|ZP_06268205.1| pseudouridine synthase, RluA family [Prevotella bivia JCVIHMP010]
gi|424899807|ref|ZP_18323349.1| pseudouridine synthase, RluA family [Prevotella bivia DSM 20514]
gi|282588153|gb|EFB93326.1| pseudouridine synthase, RluA family [Prevotella bivia JCVIHMP010]
gi|388592007|gb|EIM32246.1| pseudouridine synthase, RluA family [Prevotella bivia DSM 20514]
Length = 364
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L+V YEDDDL+ + KP+GL V PG T++ + W K +S +
Sbjct: 103 EPEDIP--LDVIYEDDDLMVIMKPAGLVVHPGAGNFHGTLINAIAWHL-KDLASFDANDP 159
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+LL AKT AKT + F +KT+
Sbjct: 160 EVGLVHRIDKDTSGLLLIAKTPEAKTKLGKQFFNKTT 196
>gi|78776982|ref|YP_393297.1| pseudouridine synthase RluD [Sulfurimonas denitrificans DSM 1251]
gi|78497522|gb|ABB44062.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
denitrificans DSM 1251]
Length = 323
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+ + +E+ YEDDD++ +NKP+GL V P ++ T++ L+ + + SSLS + H +
Sbjct: 73 DIDFDVEILYEDDDILVINKPTGLTVHPAPSVKEATLVDWLKHKGMRL-SSLSGEERHGI 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL +GTSG ++ AK ++ DK+
Sbjct: 132 -VHRLDKGTSGAMVIAKNNSTHEFLSDQLQDKS 163
>gi|162451431|ref|YP_001613798.1| pseudouridylate synthase/ribosomal large subunit pseudouridine
synthase D [Sorangium cellulosum So ce56]
gi|161162013|emb|CAN93318.1| Pseudouridylate synthase/ribosomal large subunit pseudouridine
synthase D [Sorangium cellulosum So ce56]
Length = 350
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 28 RLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
R PW E PD P + V +EDD L+A++KP+GL V P + + TV+K ++ A++
Sbjct: 96 REPWDEQAPDTP--IPVLHEDDALLAIDKPAGLPVHPTARYHKSTVIKMME--AARPGER 151
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
L HRL R TSG+LL +T A + A F ++T VV
Sbjct: 152 L-------FLAHRLDRETSGVLLLCRTPEADRTVKAQFEERTGVV 189
>gi|307720729|ref|YP_003891869.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
autotrophica DSM 16294]
gi|306978822|gb|ADN08857.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
autotrophica DSM 16294]
Length = 324
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
DV + +E+ YEDDD++ +NKPSG+ V P ++ T++ L+ + + S++S + H +
Sbjct: 73 DVNFDVEILYEDDDVLVINKPSGVTVHPAPSVKEATLVDWLKHKGIRL-STISGEERHGI 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL +GTSG ++ AK A ++ DK+
Sbjct: 132 -VHRLDKGTSGTMVVAKNNEAHEFLSKQLQDKS 163
>gi|254459281|ref|ZP_05072702.1| ribosomal large subunit pseudouridine synthase, RluA family
[Sulfurimonas gotlandica GD1]
gi|373866526|ref|ZP_09602924.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
gotlandica GD1]
gi|207083894|gb|EDZ61185.1| ribosomal large subunit pseudouridine synthase, RluA family
[Sulfurimonas gotlandica GD1]
gi|372468627|gb|EHP28831.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
gotlandica GD1]
Length = 325
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+ + +E+ YEDDD++ +NKPSG+ V P ++ T++ L+ + + S++S + H +
Sbjct: 73 DIDFNVEILYEDDDVLVINKPSGVTVHPAPSVKEATLVDWLKHKGIRL-SNISGEERHGI 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL +GTSG ++ AK A ++ DK+
Sbjct: 132 -VHRLDKGTSGTMVVAKNNEAHEFLSEQLQDKS 163
>gi|443672083|ref|ZP_21137177.1| putative pseudouridine synthase [Rhodococcus sp. AW25M09]
gi|443415336|emb|CCQ15515.1| putative pseudouridine synthase [Rhodococcus sp. AW25M09]
Length = 291
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
GS++ ++R+P +E VP+ + + YEDDDL+ ++KP L +P G R V + R
Sbjct: 63 GSQVYFYRVPAQEVPVPFEIGILYEDDDLLVVDKPHFLATIPRG----RHVTETATVRLR 118
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
KQ P HRL R T+G+LL KTK A+ F+ ++
Sbjct: 119 KQFDCPDL-----TPAHRLDRATAGVLLFTKTKPARRPYQELFSSRS 160
>gi|154148379|ref|YP_001406840.1| RluA family pseudouridine synthase [Campylobacter hominis ATCC
BAA-381]
gi|153804388|gb|ABS51395.1| pseudouridine synthase, RluA family [Campylobacter hominis ATCC
BAA-381]
Length = 357
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 1 LTLIE----FYSTKHKNSAPLQGAGSELVYHRLPWKEPD------VPYLLEVFYEDDDLI 50
L LIE F + +N A + ++V P K+ + + +E+ YEDDDL+
Sbjct: 41 LNLIEENHIFVNNSVQNKASFKLKNDDIVGINFPLKKENENLKQNANFDIEILYEDDDLL 100
Query: 51 ALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS--SSLSSQASHPVPVHRLGRGTSGILL 108
LNKPSG+ V P ++ T+ +W K+ SS++ + VHRL + TSG +L
Sbjct: 101 VLNKPSGVVVHPAKSVKEPTL---AEWLKQKKYMLSSINGDERAGI-VHRLDKQTSGAIL 156
Query: 109 CAKTKLAKTCIAAYFADKT 127
AKT A +AA DK+
Sbjct: 157 VAKTDFAHVKLAAQLKDKS 175
>gi|444313109|ref|ZP_21148668.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
gi|443483547|gb|ELT46390.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
Length = 334
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 65 LPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 124
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK L+ ++ FAD D
Sbjct: 125 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDLSHRHLSEQFADHGRTGD 170
>gi|227543293|ref|ZP_03973342.1| ribosomal pseudouridine synthase [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227180906|gb|EEI61878.1| ribosomal pseudouridine synthase [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 294
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 15 APLQ--GAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVL 72
AP Q AG ++ ++R+P EP VP+ +E YED ++ +NKP L +P G T +
Sbjct: 68 APEQILAAGVDIFFYRMPAPEPHVPFSIETVYEDSRVLVVNKPPFLATVPKGAHITETAV 127
Query: 73 KQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ + S P HRL R TSG+LL K++ + FA +
Sbjct: 128 VRLRRATGNEELS---------PAHRLDRHTSGLLLFTKSREFRGAYQEMFARR 172
>gi|319898406|ref|YP_004158499.1| ribosomal large subunit pseudouridine synthase D [Bartonella
clarridgeiae 73]
gi|319402370|emb|CBI75909.1| ribosomal large subunit pseudouridine synthase D [Bartonella
clarridgeiae 73]
Length = 335
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++F+EDD +I +NKP+GL V PG T++ L + S S + P VHRL
Sbjct: 82 LDIFFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCSDSLSGIGG-IKRPGIVHRL 140
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK +A + A FAD +TS +D
Sbjct: 141 DKDTSGVMVIAKNDIAHRNLNAQFADHGRTSALD 174
>gi|227489029|ref|ZP_03919345.1| 23S RNA-specific pseudouridylate synthase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227090974|gb|EEI26286.1| 23S RNA-specific pseudouridylate synthase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 294
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 19 GAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
AG ++ ++R+P EP VP+ +E YED ++ +NKP L +P G T + +L+
Sbjct: 74 AAGVDIFFYRMPAPEPHVPFSIETVYEDSRVLVVNKPPFLATVPKGAHITETAVVRLRRA 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ S P HRL R TSG+LL K++ + FA +
Sbjct: 134 TGNEELS---------PAHRLDRHTSGLLLFTKSREFRGAYQEMFARR 172
>gi|163755786|ref|ZP_02162904.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
gi|161324307|gb|EDP95638.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
Length = 346
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P +++ YEDDDL+ +NKP+G+ V PG T++ L + + + + P
Sbjct: 94 DIP--IDIVYEDDDLLVVNKPAGMVVHPGHGNYSGTLINALIYHFDNLPKNSNER---PG 148
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T +A F DKTS
Sbjct: 149 LVHRIDKDTSGLLVVAKTEEAMTHLAKQFFDKTS 182
>gi|411119450|ref|ZP_11391830.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
gi|410711313|gb|EKQ68820.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
Length = 322
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 22 SELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
+L+ ++P EP ++P L++ YEDD+L+ +NKP+G+ V P Q T++ L
Sbjct: 62 GDLIRVQIPDAEPLDIQPENIP--LDILYEDDELLIINKPAGMVVHPSPGHSQGTLVNAL 119
Query: 76 QW--RASKQSSSLS--SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
W R + S+LS P VHRL + T+G + AKT LA + F DKT+ D
Sbjct: 120 LWHCRTTNGESTLSGIGGVQRPGIVHRLDKDTTGAICVAKTDLAHLHLQQQFHDKTARRD 179
>gi|325280294|ref|YP_004252836.1| pseudouridine synthase, RluA family [Odoribacter splanchnicus DSM
20712]
gi|324312103|gb|ADY32656.1| pseudouridine synthase, RluA family [Odoribacter splanchnicus DSM
20712]
Length = 353
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDDL+ +NKP+G+ V P T++ L W + P VHR+
Sbjct: 103 LNIVYEDDDLMVVNKPAGMVVHPSYGHYTGTLVNALAWHLKGNPLFKDNNDPRPGLVHRI 162
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ AKT + F +KTS
Sbjct: 163 DKDTSGLLVIAKTEKAKTHLGLQFFNKTS 191
>gi|371776249|ref|ZP_09482571.1| ribosomal large subunit pseudouridine synthase D [Anaerophaga sp.
HS1]
Length = 361
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +ED++LI +NKP G+ V PG T++ L W K S+ P VHR+
Sbjct: 111 LDIVFEDNELIVVNKPPGMVVHPGYGNYTGTLVNALAWHL-KDHPWFQSKDPRPGLVHRI 169
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ AKT +A F +KT+
Sbjct: 170 DKDTSGLLVVAKTENAKTHLAQQFFNKTT 198
>gi|395791384|ref|ZP_10470842.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
gi|395408747|gb|EJF75357.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
Length = 334
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHR 98
+L++ +EDD +I +NKP+GL V PG T++ L + K S + P VHR
Sbjct: 80 VLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGKSLSGIGG-VRRPGIVHR 138
Query: 99 LGRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
L + TSG+++ AK A ++A F+D +TS +D
Sbjct: 139 LDKNTSGVMIVAKNDFAHKSLSAQFSDHGRTSALD 173
>gi|420245965|ref|ZP_14749488.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398044520|gb|EJL37336.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 340
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P LEV YEDDDLI + KP+GL V PG T++ L + S +
Sbjct: 84 KGEDIP--LEVLYEDDDLIVIAKPAGLVVHPGAGNWTGTLVNALIYHCGASLSGIGG-VK 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK +A +A FAD
Sbjct: 141 RPGIVHRLDKDTSGVMVAAKNDIAHRHLADQFAD 174
>gi|67478945|ref|XP_654854.1| RNA pseudouridylate synthase [Entamoeba histolytica HM-1:IMSS]
gi|56471941|gb|EAL49468.1| RNA pseudouridylate synthase, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 389
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
H LP VPYLL + YED+D+I +NKPSG+ GG + + TV++ L+
Sbjct: 131 HELP-----VPYLLPIIYEDNDVIVVNKPSGIPTHSGGRYTENTVIRILE---------- 175
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ VHRL R TSG+LL AK+ I +F +
Sbjct: 176 KERNIKLFGVHRLDRLTSGVLLIAKSSEIANEIQRHFIN 214
>gi|449701801|gb|EMD42551.1| ribosomal pseudouridine synthase, putative [Entamoeba histolytica
KU27]
Length = 389
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
H LP VPYLL + YED+D+I +NKPSG+ GG + + TV++ L+
Sbjct: 131 HELP-----VPYLLPIIYEDNDVIVVNKPSGIPTHSGGRYTENTVIRILE---------- 175
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ VHRL R TSG+LL AK+ I +F +
Sbjct: 176 KERNIKLFGVHRLDRLTSGVLLIAKSSEIANEIQRHFIN 214
>gi|384516624|ref|YP_005711716.1| hypothetical protein CULC809_02095 [Corynebacterium ulcerans 809]
gi|334697825|gb|AEG82622.1| hypothetical protein CULC809_02095 [Corynebacterium ulcerans 809]
Length = 335
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YEDD+L+ +NKP L +P G + T +Q R
Sbjct: 96 ANEDIWFYRTPAPETPVPYSCETVYEDDNLLVVNKPPFLATMPRG--KHITQTATVQMRR 153
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 154 ATGNGELS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 193
>gi|194696406|gb|ACF82287.1| unknown [Zea mays]
Length = 242
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 33/35 (94%)
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
SHPVPVHRLGRGTSG+LLCAKTK+AK +A+YFA+
Sbjct: 14 SHPVPVHRLGRGTSGLLLCAKTKVAKVRLASYFAE 48
>gi|392401493|ref|YP_006438093.1| ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis Cp162]
gi|390532571|gb|AFM08300.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis Cp162]
Length = 327
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YEDD+L+ +NKP L +P G + T +Q R
Sbjct: 88 ANEDIWFYRTPAPEIPVPYSCETIYEDDNLLVVNKPPFLATMPRG--KHITQTATVQMRR 145
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 146 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 185
>gi|384505600|ref|YP_005682270.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 1002]
gi|385808488|ref|YP_005844885.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 267]
gi|387137517|ref|YP_005693497.1| ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|302331676|gb|ADL21870.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 1002]
gi|348607962|gb|AEP71235.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|383805881|gb|AFH52960.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 267]
Length = 325
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YEDD+L+ +NKP L +P G + T +Q R
Sbjct: 86 ANEDIWFYRTPAPEIPVPYSCETIYEDDNLLVVNKPPFLATMPRG--KHITQTATVQMRR 143
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 144 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 183
>gi|337291855|ref|YP_004630876.1| hypothetical protein CULC22_02252 [Corynebacterium ulcerans
BR-AD22]
gi|334700161|gb|AEG84957.1| hypothetical protein CULC22_02252 [Corynebacterium ulcerans
BR-AD22]
Length = 335
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YEDD+L+ +NKP L +P G + T +Q R
Sbjct: 96 ANEDIWFYRTPAPETPVPYSCETVYEDDNLLVVNKPPFLATMPRG--KHITQTATVQMRR 153
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 154 ATGNGELS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 193
>gi|300859437|ref|YP_003784420.1| hypothetical protein cpfrc_02020 [Corynebacterium
pseudotuberculosis FRC41]
gi|375289627|ref|YP_005124168.1| ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383315182|ref|YP_005376037.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis P54B96]
gi|384507691|ref|YP_005684360.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis C231]
gi|384509786|ref|YP_005686454.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis I19]
gi|384511868|ref|YP_005691446.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis PAT10]
gi|300686891|gb|ADK29813.1| hypothetical protein cpfrc_02020 [Corynebacterium
pseudotuberculosis FRC41]
gi|302207115|gb|ADL11457.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis C231]
gi|341825807|gb|AEK93328.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis PAT10]
gi|354460616|gb|AER24525.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis I19]
gi|371576916|gb|AEX40519.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380870683|gb|AFF23157.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis P54B96]
Length = 327
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YEDD+L+ +NKP L +P G + T +Q R
Sbjct: 88 ANEDIWFYRTPAPEIPVPYSCETIYEDDNLLVVNKPPFLATMPRG--KHITQTATVQMRR 145
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 146 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 185
>gi|224536385|ref|ZP_03676924.1| hypothetical protein BACCELL_01259 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521998|gb|EEF91103.1| hypothetical protein BACCELL_01259 [Bacteroides cellulosilyticus
DSM 14838]
Length = 357
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG Q T++ + W K + + H
Sbjct: 105 DIP--LNIIYEDKYLMVVNKPAGLVVHPGHGNYQGTLVNAIAWHM-KDNPDYDANDPHVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVIAKTPDAKTNLGMQFFNKTT 195
>gi|410995626|gb|AFV97091.1| ribosomal large subunit pseudouridine synthase d [uncultured
Sulfuricurvum sp. RIFRC-1]
Length = 325
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 22 SELVYHRLPWKEP----DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
S+ V+ R P ++ +V + +EV +ED+D++ +NKPS L V P ++ T++ L+
Sbjct: 57 SQNVHIRFPEQKSTPALEVDFEVEVLFEDNDILVINKPSSLTVHPAPSVKEATLVDWLKH 116
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ S+LS + H + VHRL RGTSG ++ AK A ++ DKT
Sbjct: 117 KGIAL-STLSGEERHGI-VHRLDRGTSGAMVIAKNNEAHEALSLQLQDKT 164
>gi|210622438|ref|ZP_03293170.1| hypothetical protein CLOHIR_01118 [Clostridium hiranonis DSM 13275]
gi|210154254|gb|EEA85260.1| hypothetical protein CLOHIR_01118 [Clostridium hiranonis DSM 13275]
Length = 309
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P +E+ YEDDD+I +NKP G+ V P + T++ + + SS++ P
Sbjct: 83 DIP--IEIVYEDDDIIIVNKPQGMVVHPAPGNYEGTLVNAILYHCKGNLSSING-VIRPG 139
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSGIL+ AK A C+A D +
Sbjct: 140 IVHRIDKDTSGILMIAKNNNAHNCLAEQLKDHS 172
>gi|363580341|ref|ZP_09313151.1| RluA family pseudouridine synthase [Flavobacteriaceae bacterium
HQM9]
Length = 355
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
++V YEDDDL+ +NK +G+ V PG + T++ L + ++ S++ P VHR+
Sbjct: 105 IDVVYEDDDLLVVNKQAGMVVHPGHGNYEGTLINALIYHFENLPNNSSNR---PGLVHRI 161
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T +A F DKTS
Sbjct: 162 DKDTSGLLVVAKTEAAMTHLAKQFFDKTS 190
>gi|397654991|ref|YP_006495674.1| hypothetical protein CULC0102_2242 [Corynebacterium ulcerans 0102]
gi|393403947|dbj|BAM28439.1| hypothetical protein CULC0102_2242 [Corynebacterium ulcerans 0102]
Length = 291
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YEDD+L+ +NKP L +P G + T +Q R
Sbjct: 52 ANEDIWFYRTPAPETPVPYSCETVYEDDNLLVVNKPPFLATMPRG--KHITQTATVQMRR 109
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + FA++
Sbjct: 110 ATGNGELS-------PAHRLDRLTSGILVFTKNRKVRGAYQTLFAER 149
>gi|402494315|ref|ZP_10841057.1| RluA family pseudouridine synthase [Aquimarina agarilytica ZC1]
Length = 352
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
++V YEDDDL+ +NK +G+ V PG + T++ L + ++ S + P VHR+
Sbjct: 103 IDVVYEDDDLLVVNKEAGMVVHPGHGNYEGTLINALIYHFENLPNNSSDR---PGLVHRI 159
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T +A F DKTS
Sbjct: 160 DKDTSGLLVVAKTEAAMTHLAKQFFDKTS 188
>gi|395790169|ref|ZP_10469663.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
gi|395426820|gb|EJF92938.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
Length = 334
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWSGTLVNALVYHCGESLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +TS +D
Sbjct: 140 DKNTSGVMVVAKNDLAHKSLSAQFSDHGRTSALD 173
>gi|306841397|ref|ZP_07474100.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
gi|306288582|gb|EFM59931.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
Length = 294
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 25 LPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 84
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK A ++ FAD D
Sbjct: 85 GIGG-IRRPGIVHRLDKDTSGVMVVAKNNRAHRHLSEQFADHGRTGD 130
>gi|375147652|ref|YP_005010093.1| ribosomal large subunit pseudouridine synthase D [Niastella
koreensis GR20-10]
gi|361061698|gb|AEW00690.1| ribosomal large subunit pseudouridine synthase D [Niastella
koreensis GR20-10]
Length = 358
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 16/111 (14%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G E++ ++P L + +EDDD++ +NKP GL V P + T++ + W
Sbjct: 96 GEEIIPEQMP---------LNIVFEDDDILIINKPVGLVVHPASGNPRGTLINGVAWYLQ 146
Query: 81 KQSSSLSSQASHPVP----VHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+Q+S++S+ +P VHR+ + TSG+++ AKT+ A T +A F D T
Sbjct: 147 QQNSNISADN---LPRFGLVHRIDKNTSGLMVLAKTEKAVTSLAKEFFDHT 194
>gi|423223714|ref|ZP_17210183.1| RluA family pseudouridine synthase [Bacteroides cellulosilyticus
CL02T12C19]
gi|392638089|gb|EIY31942.1| RluA family pseudouridine synthase [Bacteroides cellulosilyticus
CL02T12C19]
Length = 357
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG Q T++ + W K + + H
Sbjct: 105 DIP--LNIVYEDKYLMVVNKPAGLVVHPGHGNYQGTLVNAIAWHM-KDNPDYDANDPHVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVIAKTPDAKTNLGMQFFNKTT 195
>gi|17986660|ref|NP_539294.1| ribosomal large subunit pseudouridine synthase D [Brucella
melitensis bv. 1 str. 16M]
gi|225853117|ref|YP_002733350.1| pseudouridine synthase [Brucella melitensis ATCC 23457]
gi|384445674|ref|YP_005604393.1| RluA family pseudouridine synthase [Brucella melitensis NI]
gi|17982277|gb|AAL51558.1| ribosomal large subunit pseudouridine synthase d [Brucella
melitensis bv. 1 str. 16M]
gi|225641482|gb|ACO01396.1| pseudouridine synthase, RluA family protein [Brucella melitensis
ATCC 23457]
gi|349743663|gb|AEQ09206.1| pseudouridine synthase, RluA family [Brucella melitensis NI]
Length = 347
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L ++ S
Sbjct: 78 LPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYQCGDSLS 137
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK A ++ FAD D
Sbjct: 138 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 183
>gi|296272938|ref|YP_003655569.1| pseudouridine synthase [Arcobacter nitrofigilis DSM 7299]
gi|296097112|gb|ADG93062.1| pseudouridine synthase, RluA family [Arcobacter nitrofigilis DSM
7299]
Length = 320
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS--SLSSQASH 92
DV + +E+ YED+ ++ +NKP L V P ++ T++ W +K S ++S + H
Sbjct: 71 DVDFDVEIIYEDEHILVINKPYNLVVHPAASVKEPTLV---DWLKTKDISLSTISGEERH 127
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ VHRL +GTSG+++ AKT A ++ DKT
Sbjct: 128 GI-VHRLDKGTSGVMVVAKTNEAHVALSKQLEDKT 161
>gi|256263395|ref|ZP_05465927.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 2 str. 63/9]
gi|260565840|ref|ZP_05836323.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 1 str. 16M]
gi|265991692|ref|ZP_06104249.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995529|ref|ZP_06108086.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|384212006|ref|YP_005601089.1| RluA family pseudouridine synthase [Brucella melitensis M5-90]
gi|384409116|ref|YP_005597737.1| pseudouridine synthase [Brucella melitensis M28]
gi|260151213|gb|EEW86308.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 1 str. 16M]
gi|262766813|gb|EEZ12431.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|263002648|gb|EEZ15051.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|263093392|gb|EEZ17461.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 2 str. 63/9]
gi|326409663|gb|ADZ66728.1| pseudouridine synthase [Brucella melitensis M28]
gi|326539370|gb|ADZ87585.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M5-90]
Length = 334
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L ++ S
Sbjct: 65 LPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYQCGDSLS 124
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK A ++ FAD D
Sbjct: 125 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 170
>gi|313147717|ref|ZP_07809910.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis 3_1_12]
gi|313136484|gb|EFR53844.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis 3_1_12]
Length = 357
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K +S + H
Sbjct: 104 DIP--LNIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHL-KDNSDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT 194
>gi|288803980|ref|ZP_06409402.1| ribosomal large subunit pseudouridine synthase D [Prevotella
melaninogenica D18]
gi|288333550|gb|EFC72003.1| ribosomal large subunit pseudouridine synthase D [Prevotella
melaninogenica D18]
Length = 365
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YEDD L+ +NKP+GL V PG T++ + W K S
Sbjct: 108 DIP--LDVVYEDDILMVVNKPAGLVVHPGAGNFHGTLINAIAWHL-KDMPSFDPNDPEVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLVIAKTPDAKTALGKQFFNKTT 198
>gi|52430462|ref|YP_089634.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|161619586|ref|YP_001593473.1| RluA family pseudouridine synthase [Brucella canis ATCC 23365]
gi|163845235|ref|YP_001622890.1| RluA family pseudouridine synthase [Brucella suis ATCC 23445]
gi|237816033|ref|ZP_04595029.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|256370063|ref|YP_003107574.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella microti CCM 4915]
gi|294850907|ref|ZP_06791583.1| ribosomal large subunit pseudouridine synthase D [Brucella sp. NVSL
07-0026]
gi|297248929|ref|ZP_06932637.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 5 str. B3196]
gi|376281305|ref|YP_005155311.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
VBI22]
gi|384225297|ref|YP_005616461.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|423169261|ref|ZP_17155962.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|423172590|ref|ZP_17159263.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|423175726|ref|ZP_17162394.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|423178716|ref|ZP_17165359.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|423181848|ref|ZP_17168487.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|423185151|ref|ZP_17171786.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|423188305|ref|ZP_17174917.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|423191444|ref|ZP_17178051.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|47524301|gb|AAT34906.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella suis 1330]
gi|161336397|gb|ABX62702.1| pseudouridine synthase, RluA family [Brucella canis ATCC 23365]
gi|163675958|gb|ABY40068.1| pseudouridine synthase, RluA family [Brucella suis ATCC 23445]
gi|237788696|gb|EEP62908.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|256000226|gb|ACU48625.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella microti CCM 4915]
gi|294821550|gb|EFG38546.1| ribosomal large subunit pseudouridine synthase D [Brucella sp. NVSL
07-0026]
gi|297174062|gb|EFH33419.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 5 str. B3196]
gi|343383477|gb|AEM18969.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|358258904|gb|AEU06639.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
VBI22]
gi|374535160|gb|EHR06687.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|374535353|gb|EHR06879.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|374535447|gb|EHR06969.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|374544603|gb|EHR16072.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|374544770|gb|EHR16235.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|374545128|gb|EHR16592.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|374552956|gb|EHR24378.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|374553149|gb|EHR24570.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
Length = 347
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 78 LPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 137
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK A ++ FAD D
Sbjct: 138 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 183
>gi|62290527|ref|YP_222320.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 1 str. 9-941]
gi|82700443|ref|YP_415017.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
biovar Abortus 2308]
gi|148558837|ref|YP_001259509.1| ribosomal large subunit pseudouridine synthase D [Brucella ovis
ATCC 25840]
gi|189024749|ref|YP_001935517.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Brucella abortus S19]
gi|260547225|ref|ZP_05822963.1| ribosomal large subunit pseudouridine synthase [Brucella abortus
NCTC 8038]
gi|260568746|ref|ZP_05839214.1| ribosomal large subunit pseudouridine synthase [Brucella suis bv. 4
str. 40]
gi|260755356|ref|ZP_05867704.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260758578|ref|ZP_05870926.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260762410|ref|ZP_05874747.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260884372|ref|ZP_05895986.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|261214623|ref|ZP_05928904.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261315976|ref|ZP_05955173.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261325700|ref|ZP_05964897.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261750812|ref|ZP_05994521.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261754066|ref|ZP_05997775.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|376272620|ref|YP_005151198.1| pseudouridine synthase [Brucella abortus A13334]
gi|376275741|ref|YP_005116180.1| pseudouridine synthase [Brucella canis HSK A52141]
gi|62196659|gb|AAX74959.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella abortus bv. 1 str. 9-941]
gi|82616544|emb|CAJ11622.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
synthase [Brucella melitensis biovar Abortus 2308]
gi|148370094|gb|ABQ60073.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella ovis ATCC 25840]
gi|189020321|gb|ACD73043.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella abortus S19]
gi|260095590|gb|EEW79468.1| ribosomal large subunit pseudouridine synthase [Brucella abortus
NCTC 8038]
gi|260154130|gb|EEW89212.1| ribosomal large subunit pseudouridine synthase [Brucella suis bv. 4
str. 40]
gi|260668896|gb|EEX55836.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260672836|gb|EEX59657.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675464|gb|EEX62285.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260873900|gb|EEX80969.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|260916230|gb|EEX83091.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261301680|gb|EEY05177.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261305002|gb|EEY08499.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261740565|gb|EEY28491.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261743819|gb|EEY31745.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|363400226|gb|AEW17196.1| pseudouridine synthase [Brucella abortus A13334]
gi|363404308|gb|AEW14603.1| pseudouridine synthase [Brucella canis HSK A52141]
Length = 334
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 65 LPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 124
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK A ++ FAD D
Sbjct: 125 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 170
>gi|302345911|ref|YP_003814264.1| pseudouridine synthase, RluA family [Prevotella melaninogenica ATCC
25845]
gi|302150113|gb|ADK96375.1| pseudouridine synthase, RluA family [Prevotella melaninogenica ATCC
25845]
Length = 365
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YEDD L+ +NKP+GL V PG T++ + W K S
Sbjct: 108 DIP--LDVVYEDDVLMVVNKPAGLVVHPGAGNFHGTLINAIAWHL-KDMPSFDPNDPEVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLVIAKTPDAKTALGKQFFNKTT 198
>gi|163786072|ref|ZP_02180520.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriales
bacterium ALC-1]
gi|159877932|gb|EDP71988.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriales
bacterium ALC-1]
Length = 343
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P ++V YEDDDL+ +NKP+G+ V PG T++ L + ++ S + P
Sbjct: 92 DIP--IDVVYEDDDLLVVNKPAGMVVHPGHGNYSGTLINALIFHFENLPNNSSDR---PG 146
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A ++ FA KTS
Sbjct: 147 LVHRIDKDTSGLLVVAKTEQAMAHLSNQFAKKTS 180
>gi|198277498|ref|ZP_03210029.1| hypothetical protein BACPLE_03720 [Bacteroides plebeius DSM 17135]
gi|198269996|gb|EDY94266.1| pseudouridine synthase, RluA family [Bacteroides plebeius DSM
17135]
Length = 356
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YEDDDL+ +NKP+GL V PG T++ + W + + +
Sbjct: 105 DIP--LNIVYEDDDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-RDVPTYNPNDPQVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVVAKTPDAKTSLGLQFYNKTT 195
>gi|306844672|ref|ZP_07477257.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|306274844|gb|EFM56614.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
Length = 334
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 65 LPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 124
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK A ++ FAD D
Sbjct: 125 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 170
>gi|13473214|ref|NP_104781.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
gi|14023962|dbj|BAB50567.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
Length = 329
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPG 63
TK K SA E V +P EP P L+V YEDD LI +NKP+GL V PG
Sbjct: 48 ETKRKMSA------GESVSIAMPEPEPAAPQGEAIALDVLYEDDALIVINKPAGLVVHPG 101
Query: 64 GLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
T++ L S + P VHRL + TSG+++ AKT A ++ F
Sbjct: 102 AGNWTGTLVNALIHHCGDSLSGIGG-VRRPGIVHRLDKETSGVMVVAKTDRAHKALSEAF 160
Query: 124 ADKTSVVD 131
AD D
Sbjct: 161 ADHGRTGD 168
>gi|265984699|ref|ZP_06097434.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306840039|ref|ZP_07472826.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
gi|264663291|gb|EEZ33552.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306404853|gb|EFM61145.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
Length = 334
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 65 LPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 124
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK A ++ FAD D
Sbjct: 125 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 170
>gi|407044333|gb|EKE42524.1| RNA pseudouridylate synthase, putative [Entamoeba nuttalli P19]
Length = 389
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
H LP VPYLL + +ED+D+I +NKPSG+ GG + + TV++ L+
Sbjct: 131 HELP-----VPYLLPIIFEDNDVIVVNKPSGIPTHSGGRYTENTVIRILE---------- 175
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ VHRL R TSG+LL AK+ I +F +
Sbjct: 176 KERNIKLFGVHRLDRLTSGVLLIAKSSEIANEIQRHFIN 214
>gi|304383942|ref|ZP_07366399.1| ribosomal large subunit pseudouridine synthase D [Prevotella
marshii DSM 16973]
gi|304335020|gb|EFM01293.1| ribosomal large subunit pseudouridine synthase D [Prevotella
marshii DSM 16973]
Length = 357
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV YED+DL+ +NKP+GL V PG T++ L W K + VHR+
Sbjct: 103 LEVVYEDNDLMVINKPAGLVVHPGAGNFHGTLVNALAWYL-KDLDTYDPNDPEVGLVHRI 161
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+LL AKT AK+ + F +KT+
Sbjct: 162 DKDTSGLLLIAKTPEAKSKLGVQFLNKTT 190
>gi|325298577|ref|YP_004258494.1| RluA family pseudouridine synthase [Bacteroides salanitronis DSM
18170]
gi|324318130|gb|ADY36021.1| pseudouridine synthase, RluA family [Bacteroides salanitronis DSM
18170]
Length = 360
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDL+ +NKP+GL V PG T++ + W + +
Sbjct: 107 DIP--LDIVYEDDDLMVVNKPAGLVVHPGCGNYHGTLVNAIAWHL-RNVPTYDPNDPQVG 163
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 164 LVHRIDKDTSGLLVIAKTPDAKTHLGMQFYNKTT 197
>gi|189462984|ref|ZP_03011769.1| hypothetical protein BACCOP_03686 [Bacteroides coprocola DSM 17136]
gi|189430266|gb|EDU99250.1| pseudouridine synthase, RluA family [Bacteroides coprocola DSM
17136]
Length = 355
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W + S
Sbjct: 103 DIP--LDIVYEDNDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-RDVPSYDPNDPQVG 159
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 160 LVHRIDKDTSGLLVVAKTPDAKTSLGMQFYNKTT 193
>gi|163867809|ref|YP_001609013.1| ribosomal large subunit pseudouridine synthase D [Bartonella
tribocorum CIP 105476]
gi|161017460|emb|CAK01018.1| ribosomal large subunit pseudouridine synthase D [Bartonella
tribocorum CIP 105476]
Length = 334
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGG-VKRPGVVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +T +D
Sbjct: 140 DKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALD 173
>gi|294674881|ref|YP_003575497.1| ribosomal large subunit pseudouridine synthase, RluA family
[Prevotella ruminicola 23]
gi|294472042|gb|ADE81431.1| ribosomal large subunit pseudouridine synthase, RluA family
[Prevotella ruminicola 23]
Length = 347
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P LEV YED DL+ +NKP+G+ V PG T++ + W K +S
Sbjct: 92 EPEDIP--LEVVYEDADLMVINKPAGMVVHPGCGNFNGTLVNAIAWHL-KDLASYDPNDP 148
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 149 EVGLVHRIDKDTSGLLVVAKTPDAKTSLGKQFFNKTT 185
>gi|402820828|ref|ZP_10870391.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
gi|402510331|gb|EJW20597.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
Length = 329
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 37 PYLLE-----VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
P+L E V YED D+IALNKPSGL V G + W L+++
Sbjct: 83 PHLQEMILKTVIYEDADVIALNKPSGLAVQGG---------SKTDWHVDALLDVLANKGE 133
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHRL R TSG+LL AK + A + + FAD+ +
Sbjct: 134 RPRLVHRLDRDTSGVLLLAKHRKAASTLTKAFADRET 170
>gi|383808587|ref|ZP_09964126.1| RNA pseudouridine synthase [Rothia aeria F0474]
gi|383448693|gb|EID51651.1| RNA pseudouridine synthase [Rothia aeria F0474]
Length = 366
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
Y LP +EP +P L V YED+ ++A++KP L P G F +T L +L+ R + +
Sbjct: 98 YRELP-EEPQLPDDLPVLYEDEHVLAVDKPHFLPTTPRGAFVAQTALTKLRVR---EGNP 153
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L VPVHRL R T+G+LL AKT A+ FA +
Sbjct: 154 LL------VPVHRLDRATAGVLLFAKTVPARGLFQTMFARR 188
>gi|153008568|ref|YP_001369783.1| RluA family pseudouridine synthase [Ochrobactrum anthropi ATCC
49188]
gi|151560456|gb|ABS13954.1| pseudouridine synthase, RluA family [Ochrobactrum anthropi ATCC
49188]
Length = 334
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 65 LPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 124
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK + ++ FAD D
Sbjct: 125 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRSHRHLSEQFADHGRTGD 170
>gi|404320463|ref|ZP_10968396.1| RluA family pseudouridine synthase [Ochrobactrum anthropi CTS-325]
Length = 334
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 29 LPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 65 LPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 124
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ P VHRL + TSG+++ AK + ++ FAD D
Sbjct: 125 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDRSHRHLSEQFADHGRTGD 170
>gi|445450523|ref|ZP_21444516.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-A-92]
gi|444755834|gb|ELW80402.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-A-92]
Length = 302
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVIDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|126642162|ref|YP_001085146.1| pseudouridylate synthase [Acinetobacter baumannii ATCC 17978]
Length = 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 15 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 74
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 75 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 112
>gi|429726269|ref|ZP_19261071.1| pseudouridine synthase, RluA family [Prevotella sp. oral taxon 473
str. F0040]
gi|429146925|gb|EKX89960.1| pseudouridine synthase, RluA family [Prevotella sp. oral taxon 473
str. F0040]
Length = 370
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YEDD LI +NKP+GL V PG T++ L W + + + VHR+
Sbjct: 118 LEIVYEDDQLIVINKPAGLVVHPGCGNYSGTLVNGLAWHLRDNPDYDPNDPTVGL-VHRI 176
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + A F KT+
Sbjct: 177 DKDTSGLLVVAKTPEAKTSLCAQFFHKTT 205
>gi|395766553|ref|ZP_10447093.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
gi|395415887|gb|EJF82311.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
Length = 333
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 80 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGG-IKRPGIVHRL 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +TS +D
Sbjct: 139 DKNTSGVMVVAKNDLAHKSLSAQFSDHGRTSALD 172
>gi|319900222|ref|YP_004159950.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
helcogenes P 36-108]
gi|319415253|gb|ADV42364.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
helcogenes P 36-108]
Length = 355
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 103 DIP--LNIVYEDKHLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDNPDYDANDPHVG 159
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 160 LVHRIDKDTSGLLVIAKTPDAKTNLGNQFFNKTT 193
>gi|88799662|ref|ZP_01115237.1| putative RNA pseudouridylate synthase [Reinekea blandensis MED297]
gi|88777556|gb|EAR08756.1| putative RNA pseudouridylate synthase [Reinekea sp. MED297]
Length = 309
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G Y R EPD+P+ ++ YED+ ++ ++KP L P G F + TV +L+ R
Sbjct: 75 GQRFWYFRENPNEPDIPFDADILYEDEQILVVDKPHFLSTTPVGQFMKHTVTTRLRNRTG 134
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+ + P HRL R T+G+LL K + + + F
Sbjct: 135 NMAIT---------PAHRLDRATAGVLLLTKQRAVREAYQSLF 168
>gi|421623811|ref|ZP_16064690.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC098]
gi|408702977|gb|EKL48383.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC098]
Length = 302
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVILFCKRPQSRGIYQQLFADR 169
>gi|379716294|ref|YP_005304631.1| ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 316]
gi|377655000|gb|AFB73349.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 316]
Length = 327
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YED++L+ +NKP L +P G +T +Q R
Sbjct: 88 ANEDIWFYRTPAPEIPVPYSCETIYEDNNLLVVNKPPFLATMPRGKHITKTA--TVQMRR 145
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 146 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 185
>gi|421786828|ref|ZP_16223212.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-82]
gi|410410620|gb|EKP62520.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-82]
Length = 302
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVILFCKRPQSRGIYQQLFADR 169
>gi|325265762|ref|ZP_08132449.1| RNA pseudouridine synthase [Kingella denitrificans ATCC 33394]
gi|324982745|gb|EGC18370.1| RNA pseudouridine synthase [Kingella denitrificans ATCC 33394]
Length = 309
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ + + D LI ++KP L V+P G F + T+L +L+ R
Sbjct: 76 GETIFYYRETSRESEPRIPFDEHILHIDQHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 135
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
A Q +++ PVHRL + T+G++L + ++ FA+KT
Sbjct: 136 ADLQHLNVADIT----PVHRLDKDTAGVMLLSHNPASRAAYQQMFAEKT 180
>gi|325293793|ref|YP_004279657.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
H13-3]
gi|418407474|ref|ZP_12980792.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens 5A]
gi|325061646|gb|ADY65337.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
H13-3]
gi|358006618|gb|EHJ98942.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens 5A]
Length = 340
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L+V YEDDDLI L KP+GL V PG T++ L + S +
Sbjct: 84 KGEDIP--LDVEYEDDDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGG-VK 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A +AA FAD
Sbjct: 141 RPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFAD 174
>gi|160888049|ref|ZP_02069052.1| hypothetical protein BACUNI_00457 [Bacteroides uniformis ATCC 8492]
gi|270295585|ref|ZP_06201786.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|156862548|gb|EDO55979.1| pseudouridine synthase, RluA family [Bacteroides uniformis ATCC
8492]
gi|270274832|gb|EFA20693.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 356
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LDIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGNQFFNKTT 194
>gi|417563003|ref|ZP_12213882.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC137]
gi|421200016|ref|ZP_15657176.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC109]
gi|421633663|ref|ZP_16074292.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-13]
gi|421804207|ref|ZP_16240117.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-A-694]
gi|395525585|gb|EJG13674.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC137]
gi|395563617|gb|EJG25269.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC109]
gi|408706193|gb|EKL51517.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-13]
gi|410411578|gb|EKP63447.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-A-694]
Length = 292
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 62 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 121
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 122 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 159
>gi|423304925|ref|ZP_17282924.1| RluA family pseudouridine synthase [Bacteroides uniformis
CL03T00C23]
gi|423309960|ref|ZP_17287944.1| RluA family pseudouridine synthase [Bacteroides uniformis
CL03T12C37]
gi|392682888|gb|EIY76227.1| RluA family pseudouridine synthase [Bacteroides uniformis
CL03T00C23]
gi|392683250|gb|EIY76587.1| RluA family pseudouridine synthase [Bacteroides uniformis
CL03T12C37]
Length = 356
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LDIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGNQFFNKTT 194
>gi|424059498|ref|ZP_17796989.1| RluA family pseudouridine synthase [Acinetobacter baumannii
Ab33333]
gi|404670236|gb|EKB38128.1| RluA family pseudouridine synthase [Acinetobacter baumannii
Ab33333]
Length = 302
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|395765671|ref|ZP_10446265.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
gi|395411225|gb|EJF77759.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
Length = 334
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWSGTLVNALIYHCGESLSGIGG-IKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ T+G+++ AK LA ++A F+D +TS +D
Sbjct: 140 DKNTTGVMVVAKNDLAHKSLSAQFSDHGRTSALD 173
>gi|359427686|ref|ZP_09218733.1| putative pseudouridine synthase [Acinetobacter sp. NBRC 100985]
gi|358236909|dbj|GAB00272.1| putative pseudouridine synthase [Acinetobacter sp. NBRC 100985]
Length = 321
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
+ + Y+R E VP+ E+ +E+DDLI ++KP L + P G + Q T+L +L+
Sbjct: 76 NTHIFYYRFLAHEIHVPFQHEILFENDDLIVVDKPHFLTMSPTGQYVQETLLVRLK---- 131
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
KQ+ + P+HRL R T+GI+L +K ++ FA++
Sbjct: 132 KQTGYVDL-----TPIHRLDRETAGIVLFSKRPASRGVYQQLFAER 172
>gi|387141546|ref|YP_005697524.1| ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355393337|gb|AER70002.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 1/06-A]
Length = 325
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YED++L+ +NKP L +P G + T +Q R
Sbjct: 86 ANEDIWFYRTPAPEIPVPYSCETIYEDNNLLVVNKPPFLATMPRG--KHITQTATVQMRR 143
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 144 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 183
>gi|416147728|ref|ZP_11601965.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
AB210]
gi|417569518|ref|ZP_12220376.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC189]
gi|417578116|ref|ZP_12228953.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-17]
gi|421629751|ref|ZP_16070466.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC180]
gi|421686381|ref|ZP_16126136.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-143]
gi|425751234|ref|ZP_18869182.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-113]
gi|445483656|ref|ZP_21456426.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-78]
gi|333365323|gb|EGK47337.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
AB210]
gi|395553741|gb|EJG19747.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC189]
gi|395568813|gb|EJG29483.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-17]
gi|404568983|gb|EKA74078.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-143]
gi|408699100|gb|EKL44580.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC180]
gi|425500177|gb|EKU66202.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-113]
gi|444768224|gb|ELW92441.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-78]
Length = 292
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 62 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 121
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 122 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 159
>gi|433772820|ref|YP_007303287.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433664835|gb|AGB43911.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 351
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
+P EP P L+V YEDD+LI +NKP+GL V PG T++ L S
Sbjct: 85 MPEPEPAQPQGENIALDVLYEDDELIVINKPAGLVVHPGAGNWTGTLVNALIHHCGDSLS 144
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ P VHRL + TSG+++ AKT A ++ FAD
Sbjct: 145 GIGG-VRRPGIVHRLDKETSGVMVVAKTDRAHKALSEAFAD 184
>gi|317478569|ref|ZP_07937726.1| RluA family pseudouridine synthase [Bacteroides sp. 4_1_36]
gi|316905210|gb|EFV27007.1| RluA family pseudouridine synthase [Bacteroides sp. 4_1_36]
Length = 356
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LDIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGNQFFNKTT 194
>gi|389851352|ref|YP_006353587.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 258]
gi|388248658|gb|AFK17649.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 258]
Length = 327
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YED++L+ +NKP L +P G + T +Q R
Sbjct: 88 ANEDIWFYRTPAPEIPVPYSCETIYEDNNLLVVNKPPFLATMPRG--KHITQTATVQMRR 145
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 146 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 185
>gi|366088576|ref|ZP_09455049.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
acidipiscis KCTC 13900]
Length = 300
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 22 SELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA-- 79
+E H+L D+P L++ YEDDD++ +NKP+G+ V P +T++ L +
Sbjct: 60 NEPEVHKLDLVAQDIP--LDIVYEDDDVLVVNKPAGMVVHPAPGHPDQTLVNALLYHCPL 117
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
SK + +L P VHR+ R TSG+L+ AK A +A DKT++
Sbjct: 118 SKINGTLR-----PGIVHRIDRDTSGLLMVAKNDHAHHSLAQQLKDKTTI 162
>gi|417552075|ref|ZP_12203145.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-81]
gi|421457263|ref|ZP_15906600.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-123]
gi|400206987|gb|EJO37958.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-123]
gi|400392334|gb|EJP59380.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-81]
Length = 302
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|260554620|ref|ZP_05826841.1| pseudouridylate synthase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|260411162|gb|EEX04459.1| pseudouridylate synthase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|452956016|gb|EME61410.1| pseudouridylate synthase [Acinetobacter baumannii MSP4-16]
Length = 302
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|386741319|ref|YP_006214499.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 31]
gi|384478013|gb|AFH91809.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis 31]
Length = 328
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YED++L+ +NKP L +P G + T +Q R
Sbjct: 88 ANEDIWFYRTPAPEIPVPYSCETIYEDNNLLVVNKPPFLATMPRG--KHITQTATVQMRR 145
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 146 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 185
>gi|319781137|ref|YP_004140613.1| RluA family pseudouridine synthase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167025|gb|ADV10563.1| pseudouridine synthase, RluA family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 346
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 20 AGSELVYHRLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
A E V +P EP P L+V YEDD+LI +NKP+GL V PG T++ L
Sbjct: 71 APGESVSVTMPEPEPAEPQGENIALDVLYEDDELIVINKPAGLVVHPGAGNWTGTLVNAL 130
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
S + P VHRL + TSG+++ AKT A ++ FAD
Sbjct: 131 IHHCGDSLSGIGG-VRRPGIVHRLDKETSGVMVVAKTDRAHKSLSEAFAD 179
>gi|260549352|ref|ZP_05823571.1| pseudouridylate synthase [Acinetobacter sp. RUH2624]
gi|424055175|ref|ZP_17792698.1| RluA family pseudouridine synthase [Acinetobacter nosocomialis
Ab22222]
gi|425740145|ref|ZP_18858320.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-487]
gi|260407461|gb|EEX00935.1| pseudouridylate synthase [Acinetobacter sp. RUH2624]
gi|407439100|gb|EKF45642.1| RluA family pseudouridine synthase [Acinetobacter nosocomialis
Ab22222]
gi|425495297|gb|EKU61484.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-487]
Length = 302
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|421651713|ref|ZP_16092080.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC0162]
gi|425749799|ref|ZP_18867766.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-348]
gi|445460456|ref|ZP_21448365.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC047]
gi|408507646|gb|EKK09340.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC0162]
gi|425487201|gb|EKU53559.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-348]
gi|444773691|gb|ELW97787.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC047]
Length = 302
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|193077696|gb|ABO12544.2| putative pseudouridylate synthase [Acinetobacter baumannii ATCC
17978]
Length = 302
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|85816530|gb|EAQ37717.1| pseudouridine synthase, RluA family [Dokdonia donghaensis MED134]
Length = 347
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDL+ +NKP+G+ V PG T++ L ++ S + P
Sbjct: 94 DIP--LDIIYEDDDLLVVNKPAGMVVHPGHGNYSGTLINALIHHIDNLPNNSSER---PG 148
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T ++ F +KT+
Sbjct: 149 LVHRIDKDTSGLLVVAKTEHAMTHLSKQFFNKTT 182
>gi|265755351|ref|ZP_06090121.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
3_1_33FAA]
gi|263234493|gb|EEZ20083.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
3_1_33FAA]
Length = 358
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 105 DIP--LDIVYEDNDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPRYDPNDPQVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 195
>gi|398831174|ref|ZP_10589353.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
gi|398212742|gb|EJM99344.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
Length = 350
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED DL+ +NKP+GL V PG T++ L S + P
Sbjct: 93 DIP--LDILYEDTDLVVINKPAGLVVHPGNGNWTGTLVNALIHHCGDTLSGIGG-VKRPG 149
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
VHRL + TSG+++ AK LA ++A FAD D
Sbjct: 150 IVHRLDKETSGVIVVAKNDLAHRHLSAQFADHGRTGD 186
>gi|228471651|ref|ZP_04056425.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
gingivalis ATCC 33624]
gi|228277070|gb|EEK15756.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
gingivalis ATCC 33624]
Length = 343
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L++ YED++LI +NKP+GL V PG Q T++ L + Q ++S + P V
Sbjct: 90 PIPLDIVYEDEELIIINKPAGLVVHPGHGNYQGTLINGLIYHF--QHLPMNS-SDRPGLV 146
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
HR+ + TSG+L+ AKT+ A +A F +KTS
Sbjct: 147 HRIDKDTSGLLVVAKTEEAMNHLAKQFFNKTS 178
>gi|169795560|ref|YP_001713353.1| pseudouridylate synthase [Acinetobacter baumannii AYE]
gi|213158499|ref|YP_002319797.1| RNA pseudouridine synthase family protein [Acinetobacter baumannii
AB0057]
gi|215483047|ref|YP_002325252.1| RNA pseudouridylate synthase family protein [Acinetobacter
baumannii AB307-0294]
gi|239501495|ref|ZP_04660805.1| RNA pseudouridylate synthase family protein [Acinetobacter
baumannii AB900]
gi|301347863|ref|ZP_07228604.1| putative pseudouridylate synthase [Acinetobacter baumannii AB056]
gi|301510578|ref|ZP_07235815.1| putative pseudouridylate synthase [Acinetobacter baumannii AB058]
gi|301596370|ref|ZP_07241378.1| putative pseudouridylate synthase [Acinetobacter baumannii AB059]
gi|332850622|ref|ZP_08432869.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
6013150]
gi|332867097|ref|ZP_08437394.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
6013113]
gi|417574482|ref|ZP_12225336.1| pseudouridine synthase, RluA family [Acinetobacter baumannii Canada
BC-5]
gi|421622941|ref|ZP_16063833.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC074]
gi|421644378|ref|ZP_16084862.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-235]
gi|421646001|ref|ZP_16086456.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-251]
gi|421660085|ref|ZP_16100293.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-83]
gi|421679642|ref|ZP_16119511.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC111]
gi|421698989|ref|ZP_16138528.1| pseudouridine synthase, RluA family [Acinetobacter baumannii IS-58]
gi|421796723|ref|ZP_16232780.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-21]
gi|421802438|ref|ZP_16238391.1| pseudouridine synthase, RluA family [Acinetobacter baumannii Canada
BC1]
gi|445492387|ref|ZP_21460334.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
AA-014]
gi|169148487|emb|CAM86353.1| putative pseudouridylate synthase [Acinetobacter baumannii AYE]
gi|213057659|gb|ACJ42561.1| RNA pseudouridine synthase family protein [Acinetobacter baumannii
AB0057]
gi|213989079|gb|ACJ59378.1| RNA pseudouridylate synthase family protein [Acinetobacter
baumannii AB307-0294]
gi|332730459|gb|EGJ61775.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
6013150]
gi|332734290|gb|EGJ65419.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
6013113]
gi|400210050|gb|EJO41020.1| pseudouridine synthase, RluA family [Acinetobacter baumannii Canada
BC-5]
gi|404572308|gb|EKA77353.1| pseudouridine synthase, RluA family [Acinetobacter baumannii IS-58]
gi|408505703|gb|EKK07423.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-235]
gi|408517994|gb|EKK19529.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-251]
gi|408694067|gb|EKL39655.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC074]
gi|408706478|gb|EKL51796.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-83]
gi|410390818|gb|EKP43198.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC111]
gi|410398556|gb|EKP50771.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-21]
gi|410404235|gb|EKP56308.1| pseudouridine synthase, RluA family [Acinetobacter baumannii Canada
BC1]
gi|444763626|gb|ELW87962.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
AA-014]
Length = 302
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|423231221|ref|ZP_17217624.1| RluA family pseudouridine synthase [Bacteroides dorei CL02T00C15]
gi|423246891|ref|ZP_17227943.1| RluA family pseudouridine synthase [Bacteroides dorei CL02T12C06]
gi|392628898|gb|EIY22922.1| RluA family pseudouridine synthase [Bacteroides dorei CL02T00C15]
gi|392634120|gb|EIY28047.1| RluA family pseudouridine synthase [Bacteroides dorei CL02T12C06]
Length = 357
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 104 DIP--LDIVYEDNDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPRYDPNDPQVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 194
>gi|344203445|ref|YP_004788588.1| RluA family pseudouridine synthase [Muricauda ruestringensis DSM
13258]
gi|343955367|gb|AEM71166.1| pseudouridine synthase, RluA family [Muricauda ruestringensis DSM
13258]
Length = 343
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+G+ V PG T++ L + ++ S + P
Sbjct: 93 DIP--LDIVYEDDVLLVVNKPAGMVVHPGHGNYSGTLINALVYHFENLPNNSSDR---PG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T +A F DK+S
Sbjct: 148 LVHRIDKDTSGLLVIAKTESAMTHLAQQFFDKSS 181
>gi|212691724|ref|ZP_03299852.1| hypothetical protein BACDOR_01219 [Bacteroides dorei DSM 17855]
gi|212665729|gb|EEB26301.1| pseudouridine synthase, RluA family [Bacteroides dorei DSM 17855]
Length = 358
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 105 DIP--LDIVYEDNDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPRYDPNDPQVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 195
>gi|184158634|ref|YP_001846973.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
ACICU]
gi|332874330|ref|ZP_08442242.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
6014059]
gi|384131382|ref|YP_005513994.1| Pseudouridine synthase [Acinetobacter baumannii 1656-2]
gi|384143715|ref|YP_005526425.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
MDR-ZJ06]
gi|385238052|ref|YP_005799391.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
TCDC-AB0715]
gi|387123450|ref|YP_006289332.1| 23S RNA-specific pseudouridylate synthase [Acinetobacter baumannii
MDR-TJ]
gi|407933242|ref|YP_006848885.1| 23S RNA-specific pseudouridylate synthase [Acinetobacter baumannii
TYTH-1]
gi|417873911|ref|ZP_12518773.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH2]
gi|417879217|ref|ZP_12523792.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH3]
gi|417882790|ref|ZP_12527068.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH4]
gi|421202716|ref|ZP_15659863.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
AC12]
gi|421536159|ref|ZP_15982410.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
AC30]
gi|421664016|ref|ZP_16104156.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC110]
gi|421695172|ref|ZP_16134786.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-692]
gi|421704142|ref|ZP_16143589.1| pseudouridylate synthase [Acinetobacter baumannii ZWS1122]
gi|421707791|ref|ZP_16147175.1| pseudouridylate synthase [Acinetobacter baumannii ZWS1219]
gi|421792905|ref|ZP_16229050.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-2]
gi|424051860|ref|ZP_17789392.1| RluA family pseudouridine synthase [Acinetobacter baumannii
Ab11111]
gi|424063408|ref|ZP_17800893.1| RluA family pseudouridine synthase [Acinetobacter baumannii
Ab44444]
gi|445471150|ref|ZP_21451903.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC338]
gi|183210228|gb|ACC57626.1| Pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
ACICU]
gi|322507602|gb|ADX03056.1| Pseudouridine synthase [Acinetobacter baumannii 1656-2]
gi|323518552|gb|ADX92933.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
TCDC-AB0715]
gi|332737458|gb|EGJ68373.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
6014059]
gi|342229354|gb|EGT94222.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH3]
gi|342230233|gb|EGT95074.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH2]
gi|342237067|gb|EGU01559.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH4]
gi|347594208|gb|AEP06929.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
MDR-ZJ06]
gi|385877942|gb|AFI95037.1| 23S RNA-specific pseudouridylate synthase [Acinetobacter baumannii
MDR-TJ]
gi|398327844|gb|EJN43975.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
AC12]
gi|404566740|gb|EKA71882.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-692]
gi|404665416|gb|EKB33379.1| RluA family pseudouridine synthase [Acinetobacter baumannii
Ab11111]
gi|404674585|gb|EKB42329.1| RluA family pseudouridine synthase [Acinetobacter baumannii
Ab44444]
gi|407190536|gb|EKE61752.1| pseudouridylate synthase [Acinetobacter baumannii ZWS1122]
gi|407191291|gb|EKE62493.1| pseudouridylate synthase [Acinetobacter baumannii ZWS1219]
gi|407901823|gb|AFU38654.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
TYTH-1]
gi|408712313|gb|EKL57496.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC110]
gi|409985969|gb|EKO42171.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter baumannii
AC30]
gi|410398996|gb|EKP51199.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-2]
gi|444771890|gb|ELW96014.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC338]
Length = 302
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|417549121|ref|ZP_12200201.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-18]
gi|417567501|ref|ZP_12218373.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC143]
gi|395553173|gb|EJG19181.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC143]
gi|400387089|gb|EJP50162.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-18]
Length = 302
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|417547314|ref|ZP_12198400.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC032]
gi|421668047|ref|ZP_16108089.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC087]
gi|421671254|ref|ZP_16111230.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC099]
gi|421675480|ref|ZP_16115401.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC065]
gi|421691713|ref|ZP_16131372.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-116]
gi|421806921|ref|ZP_16242783.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC035]
gi|400385202|gb|EJP43880.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC032]
gi|404562322|gb|EKA67546.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
IS-116]
gi|410381024|gb|EKP33598.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC087]
gi|410382411|gb|EKP34965.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC065]
gi|410382571|gb|EKP35116.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC099]
gi|410417464|gb|EKP69234.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC035]
Length = 302
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|423242400|ref|ZP_17223508.1| RluA family pseudouridine synthase [Bacteroides dorei CL03T12C01]
gi|392639193|gb|EIY33019.1| RluA family pseudouridine synthase [Bacteroides dorei CL03T12C01]
Length = 357
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 104 DIP--LDIVYEDNDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPRYDPNDPQVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 194
>gi|345513614|ref|ZP_08793133.1| ribosomal large subunit pseudouridine synthase D [Bacteroides dorei
5_1_36/D4]
gi|229437505|gb|EEO47582.1| ribosomal large subunit pseudouridine synthase D [Bacteroides dorei
5_1_36/D4]
Length = 357
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 104 DIP--LDIVYEDNDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPRYDPNDPQVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 194
>gi|395787283|ref|ZP_10466884.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
gi|395411707|gb|EJF78228.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
Length = 334
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHR 98
+L++ +ED+D+I +NKP+GL V PG T++ L S + P VHR
Sbjct: 80 ILDILFEDNDVIVINKPAGLVVHPGNGNWTGTLVNALIHHCGNSLSGIGG-VKRPGIVHR 138
Query: 99 LGRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
L + TSG+++ AK A ++A F+D +TS +D
Sbjct: 139 LDKNTSGVMVVAKNDFAHKSLSAQFSDHGRTSALD 173
>gi|86144060|ref|ZP_01062398.1| ribosomal large subunit pseudouridine synthase D [Leeuwenhoekiella
blandensis MED217]
gi|85829520|gb|EAQ47984.1| ribosomal large subunit pseudouridine synthase D [Leeuwenhoekiella
blandensis MED217]
Length = 344
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDD L+ +NKP+G+ V PG T++ L + + S + P
Sbjct: 94 DIP--LDIVFEDDTLLVVNKPAGMVVHPGHGNYSGTLINALIYHFDNLPENSSGR---PG 148
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T +A F DKTS
Sbjct: 149 LVHRIDKDTSGLLVVAKTEEAMTHLAKQFFDKTS 182
>gi|423711105|ref|ZP_17685425.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
gi|395415019|gb|EJF81454.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
Length = 334
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCHDSLSGIGG-IKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +TS +D
Sbjct: 140 DKNTSGVMVVAKNDLAHQSLSAQFSDHGRTSALD 173
>gi|259046729|ref|ZP_05737130.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
adiacens ATCC 49175]
gi|259036625|gb|EEW37880.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
adiacens ATCC 49175]
Length = 308
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 23/124 (18%)
Query: 32 KEPDVPYL------LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
KE DV + L++ +EDD LI +NKPSG+ V P T++ L + ++ S S
Sbjct: 66 KEEDVITIQPENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDS 125
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAK--------------TKLAKTCIA---AYFADKTS 128
S + P VHR+ + TSG+L+ AK K+ + IA +FA +T
Sbjct: 126 TSEEIYRPGLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETG 185
Query: 129 VVDA 132
VVDA
Sbjct: 186 VVDA 189
>gi|126738738|ref|ZP_01754434.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
SK209-2-6]
gi|126719919|gb|EBA16626.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
SK209-2-6]
Length = 344
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LEV YEDDDLI +NKP+G+ V P T++ L ++ S + P
Sbjct: 82 DIP--LEVIYEDDDLIVINKPAGMVVHPAPGTPSGTLVNALLHHCGEKLSGVGG-VKRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AKT A +AA F T
Sbjct: 139 IVHRIDKETSGLLVVAKTDAAHQGLAAQFEKHT 171
>gi|402831096|ref|ZP_10879789.1| pseudouridine synthase, RluA family [Capnocytophaga sp. CM59]
gi|402283145|gb|EJU31667.1| pseudouridine synthase, RluA family [Capnocytophaga sp. CM59]
Length = 342
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L++ YED++LI +NKP+GL V PG Q T++ L + Q ++S + P V
Sbjct: 90 PIPLDIVYEDEELIIINKPAGLVVHPGHGNYQGTLINGLIYHF--QHLPMNS-SDRPGLV 146
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
HR+ + TSG+L+ AKT+ A +A F +KTS
Sbjct: 147 HRIDKDTSGLLVVAKTEEAMNHLAKQFFNKTS 178
>gi|237708677|ref|ZP_04539158.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
9_1_42FAA]
gi|229457377|gb|EEO63098.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
9_1_42FAA]
Length = 357
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 104 DIP--LDIVYEDNDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPRYDPNDPQVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 194
>gi|387139583|ref|YP_005695562.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|349736061|gb|AEQ07539.1| Ribosomal pseudouridine synthase [Corynebacterium
pseudotuberculosis CIP 52.97]
Length = 342
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A ++ ++R P E VPY E YED++L+ +NKP L +P G + T +Q R
Sbjct: 88 ANEDIWFYRTPAPEIPVPYSCETIYEDNNLLVVNKPPFLATMPRG--KHITQTATVQMRR 145
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + LS P HRL R TSGIL+ K + + + FA++
Sbjct: 146 ATGNGDLS-------PAHRLDRLTSGILVFTKNRKVRGAYQSLFAER 185
>gi|329120090|ref|ZP_08248760.1| RNA pseudouridine synthase [Neisseria bacilliformis ATCC BAA-1200]
gi|327463621|gb|EGF09939.1| RNA pseudouridine synthase [Neisseria bacilliformis ATCC BAA-1200]
Length = 377
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 21 GSELVYHR--LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G L Y+R + + EP++P+ E+ Y D L+A++KP L V+PGG F + T+L +L+
Sbjct: 143 GGRLFYYREAVAFDEPEIPFREEILYADKHLLAVDKPHFLPVVPGGRFLRETLLTRLRLH 202
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
Q + A P+HR+ + T+G++L + + ++ F
Sbjct: 203 PELQDADPDGLA----PLHRIDKDTAGVVLFCRRRESRRAYQMLF 243
>gi|313682856|ref|YP_004060594.1| ribosomal large subunit pseudouridine synthase d [Sulfuricurvum
kujiense DSM 16994]
gi|313155716|gb|ADR34394.1| ribosomal large subunit pseudouridine synthase D [Sulfuricurvum
kujiense DSM 16994]
Length = 325
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 22 SELVYHRLPWKEP----DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
S+ V R P ++ ++ + +++ +EDDD++ +NKPS L V P ++ T++ L+
Sbjct: 57 SQTVIIRFPEQKSTPAQEIDFDVDILFEDDDILVINKPSSLTVHPAPSVKEPTLVDWLKH 116
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ S+LS + H + VHRL RGTSG ++ AK A ++ DKT
Sbjct: 117 KGIAL-STLSGEERHGI-VHRLDRGTSGAMVIAKNNEAHEALSLQLQDKT 164
>gi|445430119|ref|ZP_21438447.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC021]
gi|444760846|gb|ELW85276.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
OIFC021]
Length = 302
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|37519752|ref|NP_923129.1| pseudouridine synthase [Gloeobacter violaceus PCC 7421]
gi|35210743|dbj|BAC88124.1| gll0183 [Gloeobacter violaceus PCC 7421]
Length = 314
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 8/97 (8%)
Query: 24 LVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS 83
L Y R PW+EP VP + + Y D+ ++ + KP GL VLPGG F + T+L Q++ R + +
Sbjct: 80 LTYCRPPWQEPSVPLDIVIIYADEQVLVVAKPGGLPVLPGGGFLEHTLLWQVRRRFAGEE 139
Query: 84 SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
PVP+HRLGRGTSG++L A+T ++ ++
Sbjct: 140 P--------PVPIHRLGRGTSGLVLLARTHSSRAALS 168
>gi|417868953|ref|ZP_12513948.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH1]
gi|342231360|gb|EGT96169.1| putative pseudouridylate synthase [Acinetobacter baumannii ABNIH1]
Length = 256
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 26 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 85
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 86 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 123
>gi|126664287|ref|ZP_01735278.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BAL38]
gi|126623707|gb|EAZ94404.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BAL38]
Length = 346
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+G+ V PG T++ L + + S + P VHR+
Sbjct: 95 LDIVYEDDQLLVINKPAGMVVHPGHGNYSGTLVNALAYHFENLPMNSSER---PGLVHRI 151
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ T+G+L+ AKT+LA ++ FA+KTS
Sbjct: 152 DKDTTGLLVVAKTELAMAYLSKQFAEKTS 180
>gi|395780276|ref|ZP_10460743.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
gi|395419543|gb|EJF85843.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
Length = 337
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCHDSLSGIGG-IKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +TS +D
Sbjct: 140 DKNTSGVMVVAKNDLAHQSLSAQFSDHGRTSALD 173
>gi|240850017|ref|YP_002971410.1| ribosomal large subunit pseudouridine synthase D [Bartonella
grahamii as4aup]
gi|240267140|gb|ACS50728.1| ribosomal large subunit pseudouridine synthase D [Bartonella
grahamii as4aup]
Length = 334
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHIIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +T +D
Sbjct: 140 DKNTSGVMIVAKNDLAHKSLSAQFSDHGRTCALD 173
>gi|225628223|ref|ZP_03786257.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|261757311|ref|ZP_06001020.1| ribosomal large subunit pseudouridine synthase [Brucella sp. F5/99]
gi|225616069|gb|EEH13117.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|261737295|gb|EEY25291.1| ribosomal large subunit pseudouridine synthase [Brucella sp. F5/99]
Length = 334
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 80 LDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLSGIGG-IRRPGIVHRL 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ TSG+++ AK A ++ FAD D
Sbjct: 139 DKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 170
>gi|345518014|ref|ZP_08797473.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
4_3_47FAA]
gi|423313681|ref|ZP_17291617.1| RluA family pseudouridine synthase [Bacteroides vulgatus
CL09T03C04]
gi|345457550|gb|EET15517.2| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
4_3_47FAA]
gi|392684616|gb|EIY77940.1| RluA family pseudouridine synthase [Bacteroides vulgatus
CL09T03C04]
Length = 357
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 104 DIP--LDIVYEDNDLMVVNKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPKYDPNDPQVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 194
>gi|261219246|ref|ZP_05933527.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261316161|ref|ZP_05955358.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261322307|ref|ZP_05961504.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|265987225|ref|ZP_06099782.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|265998740|ref|ZP_06111297.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|260924335|gb|EEX90903.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261294997|gb|EEX98493.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261295384|gb|EEX98880.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|262553429|gb|EEZ09198.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|264659422|gb|EEZ29683.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
Length = 334
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 80 LDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLSGIGG-IRRPGIVHRL 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ TSG+++ AK A ++ FAD D
Sbjct: 139 DKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 170
>gi|169633282|ref|YP_001707018.1| pseudouridylate synthase [Acinetobacter baumannii SDF]
gi|169152074|emb|CAP00961.1| putative pseudouridylate synthase [Acinetobacter baumannii]
Length = 302
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNKFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|150003134|ref|YP_001297878.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
vulgatus ATCC 8482]
gi|294778333|ref|ZP_06743757.1| pseudouridine synthase, RluA family [Bacteroides vulgatus PC510]
gi|319640483|ref|ZP_07995205.1| pseudouridine synthase [Bacteroides sp. 3_1_40A]
gi|149931558|gb|ABR38256.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
vulgatus ATCC 8482]
gi|294447809|gb|EFG16385.1| pseudouridine synthase, RluA family [Bacteroides vulgatus PC510]
gi|317387970|gb|EFV68827.1| pseudouridine synthase [Bacteroides sp. 3_1_40A]
Length = 358
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+GL V PG T++ + W K +
Sbjct: 105 DIP--LDIVYEDNDLMVVNKPAGLVVHPGCGNYHGTLVNAIAWHL-KDNPKYDPNDPQVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVVAKTPDAKTHLGLQFYNKTT 195
>gi|296114958|ref|ZP_06833603.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295978476|gb|EFG85209.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 323
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 28 RLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS 83
R+P P P L+V +ED DLI L+KP+GL V P + T++ L
Sbjct: 69 RVPAAAPATPQGQDIALDVLFEDRDLIVLDKPAGLVVHPAPGNEDGTLVNALLGHCGDSL 128
Query: 84 SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + + P VHRL + TSG+++ AKT+LA ++A FA +
Sbjct: 129 TGIGGE-RRPGIVHRLDKDTSGVMVAAKTELAHHALSAAFASR 170
>gi|261222782|ref|ZP_05937063.1| ribosomal large subunit pseudouridine synthase D [Brucella ceti
B1/94]
gi|340791252|ref|YP_004756717.1| RluA family pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|260921366|gb|EEX88019.1| ribosomal large subunit pseudouridine synthase D [Brucella ceti
B1/94]
gi|340559711|gb|AEK54949.1| RluA family pseudouridine synthase [Brucella pinnipedialis B2/94]
Length = 347
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 93 LDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLSGIGG-IRRPGIVHRL 151
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ TSG+++ AK A ++ FAD D
Sbjct: 152 DKDTSGVMVVAKNDRAHRHLSEQFADHGRTGD 183
>gi|239832765|ref|ZP_04681094.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|239825032|gb|EEQ96600.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
Length = 402
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 29 LPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
LP EP P L++ YEDDDLI +NKP+GL V PG T++ L + S
Sbjct: 133 LPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVNALIYHCGDSLS 192
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ P VHRL + TSG+++ AK L+ ++ FAD
Sbjct: 193 GIGG-IRRPGIVHRLDKDTSGVMVVAKNDLSHRHLSEQFAD 232
>gi|150024746|ref|YP_001295572.1| 23S rRNA pseudouridine synthase [Flavobacterium psychrophilum
JIP02/86]
gi|149771287|emb|CAL42756.1| Probable 23S rRNA pseudouridine synthase [Flavobacterium
psychrophilum JIP02/86]
Length = 347
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+GL V PG T++ L + Q+ L+S + P
Sbjct: 93 DIP--LDIVYEDDALLLINKPAGLVVHPGHGNYTGTLVNALAFHF--QNLPLNS-SERPG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + T+G+L+ AKT+ A T +A F +KTS
Sbjct: 148 LVHRIDKDTTGLLVIAKTEQAMTHLAKQFENKTS 181
>gi|397676419|ref|YP_006517957.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397108|gb|AFN56435.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 317
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 28 RLPWKEP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
R EP D+P LE+ +ED+ L+ +NKP+G+ V P T++ L + + + S +
Sbjct: 71 RPAHNEPQDIP--LEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGI 128
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
A P VHR+ + TSG+L+ AKT A +AA FAD +
Sbjct: 129 GGVAR-PGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHS 168
>gi|326335706|ref|ZP_08201892.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
sp. oral taxon 338 str. F0234]
gi|325692135|gb|EGD34088.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
sp. oral taxon 338 str. F0234]
Length = 345
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 36 VPYL--LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHP 93
VP L L + YED++LI +NKP+GL V PG Q T++ L + + + S + P
Sbjct: 92 VPELIPLNIVYEDEELIIINKPAGLVVHPGHGNYQGTLINGLIYHFEQLPKNSSDR---P 148
Query: 94 VPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A +A F +KTS
Sbjct: 149 GLVHRIDKDTSGLLVVAKTEEAMNHLAKQFFNKTS 183
>gi|224024580|ref|ZP_03642946.1| hypothetical protein BACCOPRO_01306 [Bacteroides coprophilus DSM
18228]
gi|224017802|gb|EEF75814.1| hypothetical protein BACCOPRO_01306 [Bacteroides coprophilus DSM
18228]
Length = 354
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YED+DL+ +NKP+GL V PG T++ + W + + +
Sbjct: 103 DIP--LDVVYEDEDLMVINKPAGLVVHPGCGNYHGTLVNAIAWHL-RDVPTYNPNDPQVG 159
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 160 LVHRIDKDTSGLLVIAKTPDAKTNLGLQFYNKTT 193
>gi|445424386|ref|ZP_21436867.1| RNA pseudouridine synthase [Acinetobacter sp. WC-743]
gi|444754437|gb|ELW79051.1| RNA pseudouridine synthase [Acinetobacter sp. WC-743]
Length = 311
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
+ + Y+R E VP+ ++ YE+DDL+ ++KP L + P G + Q T+L +L + +
Sbjct: 83 NTHIYYYRFLNHEIQVPFQEKILYENDDLLVVDKPHFLTISPSGQYIQETLLVRL--KKT 140
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
++ L+ P+HRL R T+G++L +K + FAD+
Sbjct: 141 TNNADLT-------PIHRLDRETAGVVLFSKRPQTRGIYQQMFADR 179
>gi|254441292|ref|ZP_05054785.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
gi|198251370|gb|EDY75685.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
Length = 344
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 16 PLQGAGSELV------YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 69
P++G E++ YH LP D+P L+V +EDDDLI +NKP+G+ V P
Sbjct: 60 PVEGDAVEILVEIADDYHVLPE---DIP--LDVVFEDDDLIVINKPTGMVVHPAPGTPGG 114
Query: 70 TVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
T++ L S + + P VHR+ + TSG+L+ AKT A +AA F T
Sbjct: 115 TLVNALLHHCGDALSGVGGE-KRPGIVHRIDKETSGLLVVAKTDRAHHGLAAQFEAHT 171
>gi|445373337|ref|ZP_21426283.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
gi|445388250|ref|ZP_21428000.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750805|gb|ELW75594.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750959|gb|ELW75739.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
Length = 296
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDTDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|56551646|ref|YP_162485.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260752766|ref|YP_003225659.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411467|ref|YP_005620832.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|59803028|sp|P50513.2|RLUD_ZYMMO RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|56543220|gb|AAV89374.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552129|gb|ACV75075.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335931841|gb|AEH62381.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 317
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 28 RLPWKEP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
R EP D+P LE+ +ED+ L+ +NKP+G+ V P T++ L + + + S +
Sbjct: 71 RPAHNEPQDIP--LEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGI 128
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
A P VHR+ + TSG+L+ AKT A +AA FAD +
Sbjct: 129 GGVAR-PGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHS 168
>gi|49475182|ref|YP_033223.1| ribosomal large subunit pseudouridine synthase D [Bartonella
henselae str. Houston-1]
gi|49237987|emb|CAF27192.1| Ribosomal large subunit pseudouridine synthase D [Bartonella
henselae str. Houston-1]
Length = 334
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L K S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCGKSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F D +TS +D
Sbjct: 140 DKNTSGVMVVAKNDLAHKSLSAQFFDHGRTSALD 173
>gi|333029726|ref|ZP_08457787.1| pseudouridine synthase, RluA family [Bacteroides coprosuis DSM
18011]
gi|332740323|gb|EGJ70805.1| pseudouridine synthase, RluA family [Bacteroides coprosuis DSM
18011]
Length = 355
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
H + D+P L + YEDD L+ +NKP+GL V PG + T++ + W K +S
Sbjct: 95 HEIEIIPEDIP--LNIVYEDDYLMVVNKPAGLVVHPGHGNYRGTLVNAIAWHM-KNNSCY 151
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ VHR+ + TSG+L+ AKT AK+ + F +KT+
Sbjct: 152 DANDPRVGLVHRIDKDTSGLLVIAKTPEAKSKLGIQFFNKTT 193
>gi|443242482|ref|YP_007375707.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442799881|gb|AGC75686.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 346
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+G+ V PG T++ L ++ S++ P
Sbjct: 93 DIP--LDIVYEDDHLVVVNKPAGMVVHPGHGNYSGTLINALIHHFENLPNNSSNR---PG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A ++A FA KTS
Sbjct: 148 LVHRIDKDTSGLLVVAKTEEAMAYLSAQFAAKTS 181
>gi|1143378|dbj|BAA09443.1| ORFX [Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023]
Length = 317
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 28 RLPWKEP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
R EP D+P LE+ +ED+ L+ +NKP+G+ V P T++ L + + + S +
Sbjct: 71 RPAHNEPQDIP--LEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGI 128
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
A P VHR+ + TSG+L+ AKT A +AA FAD +
Sbjct: 129 GGVAR-PGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHS 168
>gi|404476489|ref|YP_006707920.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli B2904]
gi|404437978|gb|AFR71172.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli B2904]
Length = 330
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G E+ Y+ KEP+V +E+ Y+D DLI +NKP+ L V+P G + T+ +Q R
Sbjct: 76 GDEISYYFKDMKEPEVNKDIEIIYDDGDLIIVNKPANLPVIPSGKYYYNTLHTIMQERL- 134
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
H ++R+ R TSG ++ ++ L + A A+K S
Sbjct: 135 ---------GCHLNMINRIDRETSGCVILSRGSLVASKFCAMLANKNS 173
>gi|330814384|ref|YP_004358623.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Pelagibacter sp. IMCC9063]
gi|327487479|gb|AEA81884.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Pelagibacter sp. IMCC9063]
Length = 327
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YEDDDL+ +NKP G+ V PG T++ L + S ++ + P VHR+
Sbjct: 83 LDVVYEDDDLLVINKPIGMVVHPGAGNPDGTLVNALLHHCKENLSGINGEL-RPGIVHRI 141
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK +A +A F D
Sbjct: 142 DKDTSGLLVVAKNDIAHNVLAKQFED 167
>gi|89891672|ref|ZP_01203175.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BBFL7]
gi|89516007|gb|EAS18671.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BBFL7]
Length = 349
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+G+ V PG T++ L ++ S++ P
Sbjct: 96 DIP--LDIVYEDDTLVVVNKPAGMVVHPGHGNYSGTLINALIHHFDNLPNNSSNR---PG 150
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A + ++A FA KTS
Sbjct: 151 LVHRIDKDTSGLLVVAKTEHAMSYLSAQFAAKTS 184
>gi|421653897|ref|ZP_16094228.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-72]
gi|445405201|ref|ZP_21431178.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-57]
gi|408511747|gb|EKK13394.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-72]
gi|444781951|gb|ELX05862.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
Naval-57]
Length = 302
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E +P+ ++ +E+DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHIPFEHQILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|402306254|ref|ZP_10825305.1| pseudouridine synthase, RluA family [Prevotella sp. MSX73]
gi|400380021|gb|EJP32850.1| pseudouridine synthase, RluA family [Prevotella sp. MSX73]
Length = 367
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YEDD L+ +NKP+G+ V PG T++ + + K + + +
Sbjct: 109 DIP--LAVVYEDDGLMVINKPAGMVVHPGAGNFTGTLINAVAYYL-KDLPTFDANSPEVG 165
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKTC+ F +KT+
Sbjct: 166 LVHRIDKDTSGLLVVAKTPEAKTCLGKQFFNKTT 199
>gi|149200603|ref|ZP_01877608.1| 23S rRNA/tRNA pseudouridine synthase [Lentisphaera araneosa
HTCC2155]
gi|149136305|gb|EDM24753.1| 23S rRNA/tRNA pseudouridine synthase [Lentisphaera araneosa
HTCC2155]
Length = 323
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 23 ELVYHRLPWKEPDVPYL-----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
+ V++++P + + L L++ YEDDD++ +NKP+G+ V PG T++ L
Sbjct: 68 DFVHYKMPEEADESTLLPEDIELDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLG 127
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
R S++ +S P VHRL + TSG+++ AK+ ++ FA
Sbjct: 128 RDLDTFSAMDDGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSFA 174
>gi|423248426|ref|ZP_17229442.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
gi|423253374|ref|ZP_17234305.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|392657274|gb|EIY50911.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|392659639|gb|EIY53257.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
Length = 357
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LHIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHL-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGVQFFNKTT 194
>gi|403053921|ref|ZP_10908405.1| pseudouridylate synthase [Acinetobacter bereziniae LMG 1003]
Length = 311
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 22 SELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+ + Y+R E VP+ ++ YE+DDL+ ++KP L + P G + Q T+L +L + +
Sbjct: 84 THIYYYRFLNHEVQVPFQEKILYENDDLLVVDKPHFLTISPSGQYIQETLLVRL--KKTT 141
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
++ L+ P+HRL R T+G++L +K + FAD+
Sbjct: 142 NNADLT-------PIHRLDRETAGVVLFSKRPQTRGIYQQMFADR 179
>gi|372221138|ref|ZP_09499559.1| ribosomal large subunit pseudouridine synthase A [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 551
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ +ED L+ +NKPSG+ +PG K +Q + SL A+ P+ VHRL
Sbjct: 346 LEILFEDQHLVVVNKPSGMLSVPG---------KTIQDSVKTRILSLYPNATGPITVHRL 396
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSGILL A TK A + F D+T
Sbjct: 397 DQDTSGILLVALTKEAHKLLQRQFLDRT 424
>gi|315607390|ref|ZP_07882389.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
ATCC 33574]
gi|315250947|gb|EFU30937.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
ATCC 33574]
Length = 367
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YEDD L+ +NKP+G+ V PG T++ + + K + + +
Sbjct: 109 DIP--LAVVYEDDGLMVINKPAGMVVHPGAGNFTGTLINAVAYYL-KDLPTFDANSPEVG 165
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKTC+ F +KT+
Sbjct: 166 LVHRIDKDTSGLLVVAKTPEAKTCLGKQFFNKTT 199
>gi|288925171|ref|ZP_06419106.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
D17]
gi|288337936|gb|EFC76287.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
D17]
Length = 358
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YEDD L+ +NKP+G+ V PG T++ + + K + + +
Sbjct: 100 DIP--LAVVYEDDGLMVINKPAGMVVHPGAGNFTGTLINAVAYYL-KDLPTFDANSPEVG 156
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKTC+ F +KT+
Sbjct: 157 LVHRIDKDTSGLLVVAKTPEAKTCLGKQFFNKTT 190
>gi|53711780|ref|YP_097772.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis YCH46]
gi|60680012|ref|YP_210156.1| ribosomal large subunit pseudouridine synthase [Bacteroides
fragilis NCTC 9343]
gi|265765162|ref|ZP_06093437.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_1_16]
gi|336407959|ref|ZP_08588455.1| hypothetical protein HMPREF1018_00470 [Bacteroides sp. 2_1_56FAA]
gi|423259189|ref|ZP_17240112.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|423263840|ref|ZP_17242843.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|423269582|ref|ZP_17248554.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|423272859|ref|ZP_17251806.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
gi|423282250|ref|ZP_17261135.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
gi|52214645|dbj|BAD47238.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
fragilis YCH46]
gi|60491446|emb|CAH06196.1| ribosomal large subunit pseudouridine synthase [Bacteroides
fragilis NCTC 9343]
gi|263254546|gb|EEZ25980.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_1_16]
gi|335945038|gb|EGN06855.1| hypothetical protein HMPREF1018_00470 [Bacteroides sp. 2_1_56FAA]
gi|387776769|gb|EIK38869.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|392700428|gb|EIY93590.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|392706106|gb|EIY99229.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|392708423|gb|EIZ01530.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
gi|404581818|gb|EKA86513.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
Length = 357
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LHIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHL-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGVQFFNKTT 194
>gi|406037665|ref|ZP_11045029.1| pseudouridylate synthase [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 302
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
S + Y+R E VP+ E+ +E+++L+ ++KP L + P G + Q T+L +L+ + +
Sbjct: 73 NSHIFYYRFLAHEIHVPFQHEILFENENLLVVDKPHFLSMTPTGQYVQETLLVRLKRQTT 132
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
Q + P+HRL R T+G++L +K ++ FA++
Sbjct: 133 NQDLT---------PIHRLDRETAGVVLFSKKTESRGIYQQLFAER 169
>gi|118475501|ref|YP_892378.1| ribosomal pseudouridine synthase [Campylobacter fetus subsp. fetus
82-40]
gi|118414727|gb|ABK83147.1| ribosomal pseudouridine synthase [Campylobacter fetus subsp. fetus
82-40]
Length = 323
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP---V 96
+E+ YEDDD++ LNKPS L V P ++ T+++ L KQ+ + S + + V
Sbjct: 76 VEILYEDDDILVLNKPSNLTVHPAPSVKEATLVEWL-----KQNGYMLSTLNGDIRAGIV 130
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
HRL +GTSG+++ AK + + +AA +DK+
Sbjct: 131 HRLDKGTSGVIVVAKNNASHSALAAQLSDKS 161
>gi|375135221|ref|YP_004995871.1| putative pseudouridylate synthase [Acinetobacter calcoaceticus
PHEA-2]
gi|325122666|gb|ADY82189.1| putative pseudouridylate synthase [Acinetobacter calcoaceticus
PHEA-2]
Length = 292
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
++P G+ + + Y+R EP VP+ + +E+DDL+ ++KP L + P G + Q T+L
Sbjct: 57 TSPYVGS-THIFYYRFLAYEPHVPFEHHILFENDDLLVVDKPHFLTISPTGQYVQETLLV 115
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ + + + P+HRL R T+G++L K ++ FA++
Sbjct: 116 RLKKQTGNEFLT---------PIHRLDRETAGVVLFCKRVESRGIYQQLFAER 159
>gi|322372447|ref|ZP_08046983.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
gi|321277489|gb|EFX54558.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
Length = 297
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKNDKAHNALAAELKDKKSL 161
>gi|255692432|ref|ZP_05416107.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
finegoldii DSM 17565]
gi|423301415|ref|ZP_17279439.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
gi|260621900|gb|EEX44771.1| pseudouridine synthase, RluA family [Bacteroides finegoldii DSM
17565]
gi|408472016|gb|EKJ90545.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
Length = 357
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ L W K + + H
Sbjct: 104 DIP--LTIVYEDPYLMVVNKPAGLVVHPGHGNYHGTLVNALAWHM-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGNQFFNKTT 194
>gi|146338456|ref|YP_001203504.1| pseudouridine synthase [Bradyrhizobium sp. ORS 278]
gi|146191262|emb|CAL75267.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 278]
Length = 384
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I ++KPSGL V P + T++ L S + P VHRL
Sbjct: 136 LQIIYEDDDIIVIDKPSGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VKRPGIVHRL 194
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK +A ++A FAD
Sbjct: 195 DKDTTGLMVVAKNDMAHASLSAQFAD 220
>gi|424821021|ref|ZP_18246059.1| ribosomal pseudouridine synthase [Campylobacter fetus subsp.
venerealis NCTC 10354]
gi|342327800|gb|EGU24284.1| ribosomal pseudouridine synthase [Campylobacter fetus subsp.
venerealis NCTC 10354]
Length = 323
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP---V 96
+E+ YEDDD++ LNKPS L V P ++ T+++ L KQ+ + S + + V
Sbjct: 76 VEILYEDDDILVLNKPSNLTVHPAPSVKEATLVEWL-----KQNGYMLSTLNGDIRAGIV 130
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
HRL +GTSG+++ AK + + +AA +DK+
Sbjct: 131 HRLDKGTSGVIVVAKNNASHSALAAQLSDKS 161
>gi|393786331|ref|ZP_10374467.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
gi|392659960|gb|EIY53577.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
Length = 358
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP GL V PG T++ L W K + + H
Sbjct: 105 DIP--LNIVYEDKYLMVVNKPPGLVVHPGHGNYHGTLVNALAWHM-KDNPDYDANDPHVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT 195
>gi|419707197|ref|ZP_14234692.1| Pseudouridine synthase [Streptococcus salivarius PS4]
gi|383283078|gb|EIC81047.1| Pseudouridine synthase [Streptococcus salivarius PS4]
Length = 297
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LDYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKNDKAHNALAAELKDKKSL 161
>gi|427426556|ref|ZP_18916608.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-136]
gi|425696713|gb|EKU66417.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-136]
Length = 292
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
++P G + + Y+R EP VP+ + +E+DDL+ ++KP L + P G + Q T+L
Sbjct: 57 TSPYVG-NTHIFYYRFLAYEPHVPFKHHILFENDDLLVVDKPHFLTISPTGQYVQETLLV 115
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ + + + P+HRL R T+G++L K ++ FA++
Sbjct: 116 RLKKQTGNEFLT---------PIHRLDRETAGVVLFCKQVESRGIYQQLFAER 159
>gi|418018315|ref|ZP_12657871.1| pseudouridine synthase [Streptococcus salivarius M18]
gi|345527164|gb|EGX30475.1| pseudouridine synthase [Streptococcus salivarius M18]
Length = 296
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|257453802|ref|ZP_05619080.1| YabO/YceC/SfhB family protein [Enhydrobacter aerosaccus SK60]
gi|257448729|gb|EEV23694.1| YabO/YceC/SfhB family protein [Enhydrobacter aerosaccus SK60]
Length = 285
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG ++Y+R EP +P+ + + D L+ ++KP L V P G + +T+L +L+
Sbjct: 46 AGQTILYYRQVENEPIIPFEPNILHLDGHLLVVDKPHFLPVTPSGRYVSQTLLAKLRNHP 105
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
Q +++ + P+HRL + T+G++L + ++ C A FAD+
Sbjct: 106 DLQQLAVNDIS----PLHRLDKDTAGVMLLSVNPSSRACYHALFADR 148
>gi|395782121|ref|ZP_10462526.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
gi|395419611|gb|EJF85909.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
Length = 332
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +T +D
Sbjct: 140 DKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALD 173
>gi|319405172|emb|CBI78777.1| ribosomal large subunit pseudouridine synthase D [Bartonella sp. AR
15-3]
Length = 333
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +ED+ +I +NKP+GL V PG T++ L + S S + P VHRL
Sbjct: 80 LDILFEDNHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCSDSLSGIGG-IKRPGIVHRL 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA + A FAD +TS +D
Sbjct: 139 DKDTSGVMVIAKNDLAHRNLNAQFADHGRTSALD 172
>gi|228478264|ref|ZP_04062872.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|340399333|ref|YP_004728358.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|421451886|ref|ZP_15901247.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
gi|228249943|gb|EEK09213.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|338743326|emb|CCB93834.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|400182317|gb|EJO16579.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
Length = 296
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|55820603|ref|YP_139045.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|386086213|ref|YP_006002087.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|55736588|gb|AAV60230.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|312277926|gb|ADQ62583.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
Length = 296
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|312864274|ref|ZP_07724508.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322517241|ref|ZP_08070120.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
gi|311100275|gb|EFQ58484.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322124147|gb|EFX95681.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
Length = 296
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|387783586|ref|YP_006069669.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
gi|338744468|emb|CCB94834.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
Length = 296
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|410451821|ref|ZP_11305821.1| S4 domain protein [Leptospira sp. Fiocruz LV3954]
gi|410014326|gb|EKO76458.1| S4 domain protein [Leptospira sp. Fiocruz LV3954]
Length = 366
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G +VY + KEP V E+ YED+ +A+NKP L V P G ++
Sbjct: 53 SGKKVKSGILLKEGETIVYQPVGRKEPPVRKDYEILYEDEFFVAVNKPGDLPVHPAGKYR 112
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 113 KGNLLTLLKG---------SGRFENLFTVHRLDRETSGVVLFAKDSETASILSGFFS 160
>gi|409197089|ref|ZP_11225752.1| ribosomal large subunit pseudouridine synthase D [Marinilabilia
salmonicolor JCM 21150]
Length = 361
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YEDD LI +NK G+ V PG T++ L W K S P
Sbjct: 108 DIP--LNIVYEDDALIVVNKQPGMVVHPGFGNYTGTLVNALAWHL-KDHPWFQSNDPRPG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ AKT +A F KT+
Sbjct: 165 LVHRIDKDTSGLLVIAKTEEAKTILARQFFYKTT 198
>gi|423280335|ref|ZP_17259248.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 610]
gi|404584174|gb|EKA88844.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 610]
Length = 357
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LNIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHL-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT 194
>gi|424666073|ref|ZP_18103109.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 616]
gi|404574326|gb|EKA79077.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 616]
Length = 357
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LNIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHL-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT 194
>gi|333382376|ref|ZP_08474046.1| hypothetical protein HMPREF9455_02212 [Dysgonomonas gadei ATCC
BAA-286]
gi|332828687|gb|EGK01379.1| hypothetical protein HMPREF9455_02212 [Dysgonomonas gadei ATCC
BAA-286]
Length = 242
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YEDDDL+ +NKP GL V PG Q T++ + + K + ++
Sbjct: 104 DIP--LDVVYEDDDLMVINKPPGLVVHPGFGNYQGTLVNAVAYLL-KDTPEYDAKDPRLG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+++ AK AK ++A F +KT+
Sbjct: 161 IVHRIDKDTSGLIVVAKNAYAKAHLSAQFFNKTT 194
>gi|427384400|ref|ZP_18880905.1| RluA family pseudouridine synthase [Bacteroides oleiciplenus YIT
12058]
gi|425727661|gb|EKU90520.1| RluA family pseudouridine synthase [Bacteroides oleiciplenus YIT
12058]
Length = 357
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 105 DIP--LNIVYEDKYLMIVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDNPDYDANDPHVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT 195
>gi|189464334|ref|ZP_03013119.1| hypothetical protein BACINT_00675 [Bacteroides intestinalis DSM
17393]
gi|189438124|gb|EDV07109.1| pseudouridine synthase, RluA family [Bacteroides intestinalis DSM
17393]
Length = 357
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 105 DIP--LNIVYEDKYLMIVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDNPDYDANDPHVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT 195
>gi|386344155|ref|YP_006040319.1| pseudouridine synthase [Streptococcus thermophilus JIM 8232]
gi|387909307|ref|YP_006339613.1| pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
gi|339277616|emb|CCC19364.1| pseudouridine synthase [Streptococcus thermophilus JIM 8232]
gi|387574242|gb|AFJ82948.1| pseudouridine synthase [Streptococcus thermophilus MN-ZLW-002]
Length = 296
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGIVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|403677095|ref|ZP_10938916.1| pseudouridylate synthase [Acinetobacter sp. NCTC 10304]
Length = 302
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +E DDL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLANEVHVPFEHQILFESDDLLVVDKPHFLTISPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K ++ FAD+
Sbjct: 132 GNEFLT---------PIHRLDRETAGVVLFCKRPQSRGIYQQLFADR 169
>gi|325285479|ref|YP_004261269.1| RluA family pseudouridine synthase [Cellulophaga lytica DSM 7489]
gi|324320933|gb|ADY28398.1| pseudouridine synthase, RluA family [Cellulophaga lytica DSM 7489]
Length = 344
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+G+ V PG T++ L + SS P
Sbjct: 92 DIP--LDIVYEDDVLLVVNKPAGMVVHPGHGNYSGTLINALLHHCKVDLPNNSS--DRPG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T ++ F DKTS
Sbjct: 148 LVHRIDKDTSGLLVVAKTEAAMTFLSKQFFDKTS 181
>gi|262279505|ref|ZP_06057290.1| RNA pseudouridine synthase [Acinetobacter calcoaceticus RUH2202]
gi|262259856|gb|EEY78589.1| RNA pseudouridine synthase [Acinetobacter calcoaceticus RUH2202]
Length = 302
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 15 APLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
+P Q + + + Y+R EP VP+ + +E+DDL+ ++KP L + P G + Q T+L +
Sbjct: 68 SPYQ-SNTHIFYYRFLAYEPHVPFEHRILFENDDLLVVDKPHFLTISPTGQYVQETLLVR 126
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L+ + + + P+HRL R T+G++L K ++ FA++
Sbjct: 127 LKKQTGNEFLT---------PIHRLDRETAGVVLFCKRVESRGIYQQLFAER 169
>gi|116627406|ref|YP_820025.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMD-9]
gi|116100683|gb|ABJ65829.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMD-9]
Length = 296
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGIVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|387761789|ref|YP_006068766.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
gi|339292556|gb|AEJ53903.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
Length = 296
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|293609404|ref|ZP_06691706.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827856|gb|EFF86219.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 302
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
++P G + + Y+R EP VP+ + +E+DDL+ ++KP L + P G + Q T+L
Sbjct: 67 TSPYVG-NTHIFYYRFLAYEPHVPFKHHILFENDDLLVVDKPHFLTISPTGQYVQETLLV 125
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ + + + P+HRL R T+G++L K ++ FA++
Sbjct: 126 RLKKQTGNEFLT---------PIHRLDRETAGVVLFCKQVESRGIYQQLFAER 169
>gi|255531126|ref|YP_003091498.1| RluA family pseudouridine synthase [Pedobacter heparinus DSM 2366]
gi|255344110|gb|ACU03436.1| pseudouridine synthase, RluA family [Pedobacter heparinus DSM 2366]
Length = 342
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+G+ V PG T++ L + +Q L P
Sbjct: 93 DIP--LDIVYEDNDLLVVNKPAGMVVHPGYNNYTGTLVNALAFHF-EQLPQLPGNEGRPG 149
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+LL +K ++ T +A F D T
Sbjct: 150 LVHRIDKDTSGLLLISKNEITMTRLAKQFFDHT 182
>gi|298208169|ref|YP_003716348.1| ribosomal large subunit pseudouridine synthase D [Croceibacter
atlanticus HTCC2559]
gi|83848090|gb|EAP85960.1| ribosomal large subunit pseudouridine synthase D [Croceibacter
atlanticus HTCC2559]
Length = 356
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + +EDDD++ +NKP+G+ V PG T++ L + ++ S++ P
Sbjct: 103 DIP--LNIVHEDDDVLVVNKPAGMVVHPGHGNYSGTLINALVFHFDNLPNNSSNR---PG 157
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T ++ F +KTS
Sbjct: 158 LVHRIDKDTSGLLVVAKTEHAMTHLSKQFFNKTS 191
>gi|389693906|ref|ZP_10182000.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
gi|388587292|gb|EIM27585.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
Length = 332
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDD+I ++KP+GL V P T++ L + S + P VHRL
Sbjct: 84 LAIVYEDDDVIVIDKPAGLVVHPAAGHDSGTLVNALIAHCGESLSGIGG-VKRPGIVHRL 142
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA +AA FAD
Sbjct: 143 DKDTSGLLVVAKNDLAHQGLAAQFAD 168
>gi|121601705|ref|YP_988611.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760423|ref|ZP_16197240.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
gi|120613882|gb|ABM44483.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411175707|gb|EKS45732.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
Length = 336
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 80 LHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGIGG-VRRPGIVHRL 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +T V+D
Sbjct: 139 DKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLD 172
>gi|423133444|ref|ZP_17121091.1| RluA family pseudouridine synthase [Myroides odoratimimus CIP
101113]
gi|371648708|gb|EHO14195.1| RluA family pseudouridine synthase [Myroides odoratimimus CIP
101113]
Length = 351
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+GL V PG T++ L + ++ L+S + P VHR+
Sbjct: 97 LDIVYEDDSLLVVNKPAGLVVHPGHGNYTGTLVNALAYHF--ENLPLNS-SERPGLVHRI 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T + FA+KTS
Sbjct: 154 DKDTSGLLVVAKTEWAMTELQKQFAEKTS 182
>gi|373108543|ref|ZP_09522825.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
10230]
gi|423129788|ref|ZP_17117463.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
12901]
gi|371646660|gb|EHO12171.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
10230]
gi|371647811|gb|EHO13306.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
12901]
Length = 351
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+GL V PG T++ L + ++ L+S + P VHR+
Sbjct: 97 LDIVYEDDSLLVVNKPAGLVVHPGHGNYTGTLVNALAYHF--ENLPLNS-SERPGLVHRI 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T + FA+KTS
Sbjct: 154 DKDTSGLLVVAKTEWAMTELQKQFAEKTS 182
>gi|305664420|ref|YP_003860707.1| ribosomal large subunit pseudouridine synthase D [Maribacter sp.
HTCC2170]
gi|88708437|gb|EAR00673.1| ribosomal large subunit pseudouridine synthase D [Maribacter sp.
HTCC2170]
Length = 341
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+G+ V PG T++ L + + + + + P VHR+
Sbjct: 95 LDIVYEDDVLLVVNKPAGMVVHPGHGNYTGTLINALLYHSKDLPVNSNDR---PGLVHRI 151
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T +A F DKTS
Sbjct: 152 DKDTSGLLVVAKTEAAMTHLAKQFFDKTS 180
>gi|393782090|ref|ZP_10370279.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
gi|392674124|gb|EIY67573.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
Length = 358
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED ++ +NKP GL V PG T++ L W K + + H
Sbjct: 105 DIP--LDIVYEDKYVMVVNKPPGLVVHPGHGNYHGTLVNALAWHM-KDNPDYDANDPHVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTT 195
>gi|423329049|ref|ZP_17306856.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
3837]
gi|404603449|gb|EKB03103.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
3837]
Length = 351
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+GL V PG T++ L + ++ L+S + P VHR+
Sbjct: 97 LDIVYEDDSLLVVNKPAGLVVHPGHGNYTGTLVNALAYHF--ENLPLNS-SERPGLVHRI 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T + FA+KTS
Sbjct: 154 DKDTSGLLVVAKTEWAMTELQKQFAEKTS 182
>gi|418744398|ref|ZP_13300754.1| RNA pseudouridine synthase [Leptospira santarosai str. CBC379]
gi|418752156|ref|ZP_13308428.1| RNA pseudouridine synthase [Leptospira santarosai str. MOR084]
gi|409967885|gb|EKO35710.1| RNA pseudouridine synthase [Leptospira santarosai str. MOR084]
gi|410794849|gb|EKR92749.1| RNA pseudouridine synthase [Leptospira santarosai str. CBC379]
Length = 366
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G +VY + KEP V E+ YED+ +A+NKP L V P G ++
Sbjct: 53 SGKKIKSGILLREGETIVYQPVGRKEPPVRKDYEILYEDEFFVAVNKPGDLPVHPAGKYR 112
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 113 KGNLLTLLKG---------SGRFENLFTVHRLDRETSGVVLFAKDSETASILSGFFS 160
>gi|400753763|ref|YP_006562131.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis 2.10]
gi|398652916|gb|AFO86886.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis 2.10]
Length = 344
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LEV YEDDDLI +NKP+G+ V P T++ L S + P
Sbjct: 82 DIP--LEVIYEDDDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCGDNLSGVGG-VKRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK+ +A +AA F T
Sbjct: 139 IVHRIDKETSGLLVVAKSDVAHQGLAAQFEKHT 171
>gi|157826322|ref|YP_001494042.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Rickettsia akari str. Hartford]
gi|157800280|gb|ABV75534.1| Ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Rickettsia akari str. Hartford]
Length = 329
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 29 LPWKEPD------VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
+KEP+ V L++ YEDDDLI +NK +G+ V PG T++ L + +K
Sbjct: 62 FAFKEPEELKIAAVNIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYH-TKN 120
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
S + S A+ P VHRL + T+G+++ AK A +A
Sbjct: 121 LSDIGS-AARPGIVHRLDKDTTGLMVVAKNNKAHMLLA 157
>gi|429731693|ref|ZP_19266317.1| RNA pseudouridine synthase [Corynebacterium durum F0235]
gi|429144912|gb|EKX88012.1| RNA pseudouridine synthase [Corynebacterium durum F0235]
Length = 301
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G+++ ++R+P EP VPY YED+ L+ ++KP L LP G T L +L+ +
Sbjct: 42 GADVWFYRIPAPEPMVPYDCPTLYEDERLLVVDKPPFLSTLPRGRHITETALVRLRRQTG 101
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
S P HRL R TSG+L+ KT + FA + +
Sbjct: 102 NHELS---------PAHRLDRLTSGVLIFTKTPGVRRAYQELFATRQT 140
>gi|55822493|ref|YP_140934.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
gi|55738478|gb|AAV62119.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
Length = 292
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNALMYHV-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|337265946|ref|YP_004610001.1| RluA family pseudouridine synthase [Mesorhizobium opportunistum
WSM2075]
gi|336026256|gb|AEH85907.1| pseudouridine synthase, RluA family [Mesorhizobium opportunistum
WSM2075]
Length = 334
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
+P EP P L+V YEDD LI +NKP+GL V PG T++ L S
Sbjct: 68 MPEPEPAEPQGENIALDVLYEDDALIVINKPAGLVVHPGAGNWTGTLVNALIHHCGDSLS 127
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ P VHRL + TSG+++ AKT A ++ FAD
Sbjct: 128 GIGG-VRRPGIVHRLDKETSGVMVVAKTDRAHKALSEAFAD 167
>gi|399992104|ref|YP_006572344.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398656659|gb|AFO90625.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 344
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LEV YEDDDLI +NKP+G+ V P T++ L S + P
Sbjct: 82 DIP--LEVIYEDDDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCGDNLSGVGG-VKRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK+ +A +AA F T
Sbjct: 139 IVHRIDKETSGLLVVAKSDVAHQGLAAQFEKHT 171
>gi|167764292|ref|ZP_02436419.1| hypothetical protein BACSTE_02677 [Bacteroides stercoris ATCC
43183]
gi|167698408|gb|EDS14987.1| pseudouridine synthase, RluA family [Bacteroides stercoris ATCC
43183]
Length = 356
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED L+ +NKP+GL V PG + T++ + W K + H
Sbjct: 104 DIP--LDIVYEDKYLMVVNKPAGLVVHPGHGNYRGTLVNAIAWHM-KDIPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTT 194
>gi|340351676|ref|ZP_08674581.1| ribosomal large subunit pseudouridine synthase D [Prevotella
pallens ATCC 700821]
gi|339617092|gb|EGQ21721.1| ribosomal large subunit pseudouridine synthase D [Prevotella
pallens ATCC 700821]
Length = 362
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED++++ +NKP+GL V PG T++ + W + S
Sbjct: 107 DIP--LNVVYEDNEIMVINKPAGLVVHPGAGNFHGTLINAIAWHL-RDLKSFDPNDPAVG 163
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+LL AKT AKT + F +KT+
Sbjct: 164 LVHRIDKDTSGLLLIAKTPDAKTNLGKQFFNKTT 197
>gi|268686227|ref|ZP_06153089.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|268626511|gb|EEZ58911.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae SK-93-1035]
Length = 307
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPW--KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ R
Sbjct: 74 GKTMFYYRETGCESEPRIPFEEKILFVDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PIHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|329964664|ref|ZP_08301718.1| pseudouridine synthase, RluA family [Bacteroides fluxus YIT 12057]
gi|328525064|gb|EGF52116.1| pseudouridine synthase, RluA family [Bacteroides fluxus YIT 12057]
Length = 356
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + + H
Sbjct: 104 DIP--LNIVYEDRCLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDNPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTHLGNQFFNKTT 194
>gi|303236145|ref|ZP_07322746.1| pseudouridine synthase, RluA family [Prevotella disiens FB035-09AN]
gi|302483651|gb|EFL46645.1| pseudouridine synthase, RluA family [Prevotella disiens FB035-09AN]
Length = 360
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD+++ +NKP+GL V PG T++ + W K VHR+
Sbjct: 110 LDIVYEDDEIMVINKPAGLVVHPGAGNFHGTLINAIAWHL-KDLKDFDPNDPAVGLVHRI 168
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+LL AKT AKT + F +KT+
Sbjct: 169 DKDTSGLLLIAKTPDAKTFLGKQFFNKTT 197
>gi|329956079|ref|ZP_08296850.1| pseudouridine synthase, RluA family [Bacteroides clarus YIT 12056]
gi|328524838|gb|EGF51892.1| pseudouridine synthase, RluA family [Bacteroides clarus YIT 12056]
Length = 356
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED L+ +NKP+GL V PG T++ + W K + H
Sbjct: 104 DIP--LDIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDIPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTT 194
>gi|456874693|gb|EMF89965.1| RNA pseudouridine synthase [Leptospira santarosai str. ST188]
Length = 366
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G +VY + KEP V E+ YED+ +A+NKP L V P G ++
Sbjct: 53 SGKKIKSGILLREGETIVYQPVGRKEPPVRKDYEILYEDEFFVAVNKPGDLPVHPAGKYR 112
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 113 KGNLLTLLKE---------SGRFENLFTVHRLDRETSGVVLFAKDSETASILSGFFS 160
>gi|268681754|ref|ZP_06148616.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae PID332]
gi|291044222|ref|ZP_06569931.1| pseudouridine synthase [Neisseria gonorrhoeae DGI2]
gi|268622038|gb|EEZ54438.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae PID332]
gi|291011116|gb|EFE03112.1| pseudouridine synthase [Neisseria gonorrhoeae DGI2]
Length = 307
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPW--KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ R
Sbjct: 74 GKTMFYYRETGCESEPRIPFEEKILFVDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PIHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040287|gb|ACT57083.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+L + ++P L++ YEDDD+I +NKP+GL V P T++ L + SS++
Sbjct: 80 KLNIAQENIP--LDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSIN 137
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + T+G+++ AK LA ++ F D
Sbjct: 138 G-VKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVD 174
>gi|59800875|ref|YP_207587.1| hypothetical protein NGO0433 [Neisseria gonorrhoeae FA 1090]
gi|194098179|ref|YP_002001227.1| pseudouridine synthase [Neisseria gonorrhoeae NCCP11945]
gi|240016189|ref|ZP_04722729.1| Pseudouridine synthase [Neisseria gonorrhoeae FA6140]
gi|268600964|ref|ZP_06135131.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae PID18]
gi|268603274|ref|ZP_06137441.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae PID1]
gi|59717770|gb|AAW89175.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193933469|gb|ACF29293.1| Pseudouridine synthase [Neisseria gonorrhoeae NCCP11945]
gi|268585095|gb|EEZ49771.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae PID18]
gi|268587405|gb|EEZ52081.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae PID1]
Length = 307
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPW--KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ R
Sbjct: 74 GKTMFYYRETGCESEPRIPFEEKILFVDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PIHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|451941575|ref|YP_007462212.1| ribosomal large subunit pseudouridine synthase D [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
gi|451900962|gb|AGF75424.1| ribosomal large subunit pseudouridine synthase D [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
Length = 332
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +T +D
Sbjct: 140 DKNTSGVMVVAKNDLAHKNLSAQFSDHGRTCALD 173
>gi|372223509|ref|ZP_09501930.1| RluA family pseudouridine synthase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 342
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+G+ V PG T++ L + ++ S + P VHR+
Sbjct: 95 LDIVYEDDHLMVVNKPAGMVVHPGHGNYSGTLVNALVYHFESLPNNSSGR---PGLVHRI 151
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T +A F +KTS
Sbjct: 152 DKDTSGLLVIAKTEEAMTHLANQFFEKTS 180
>gi|336397892|ref|ZP_08578692.1| ribosomal large subunit pseudouridine synthase D [Prevotella
multisaccharivorax DSM 17128]
gi|336067628|gb|EGN56262.1| ribosomal large subunit pseudouridine synthase D [Prevotella
multisaccharivorax DSM 17128]
Length = 356
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD++ +NKP+G+ V PG T++ + W + + +
Sbjct: 102 DIP--LDIVYEDDDVLVVNKPAGMVVHPGAGNFSGTLINAVAWHL-RNLKTFDANDPAVG 158
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F KT+
Sbjct: 159 LVHRIDKDTSGLLVVAKTADAKTSLGKQFFHKTT 192
>gi|283458768|ref|YP_003363408.1| pseudouridylate synthase [Rothia mucilaginosa DY-18]
gi|283134823|dbj|BAI65588.1| pseudouridylate synthase [Rothia mucilaginosa DY-18]
Length = 377
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G + Y R EP++P + V YED+ ++A++KP L P G + +T L +L R
Sbjct: 116 GERIWYFRELADEPELPSDMPVLYEDEHVLAIDKPHFLPTTPRGAYIAQTALTKL--RVR 173
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+Q+ L +P+HRL R T+G+LL AKT A+ F +
Sbjct: 174 EQNPLL-------IPIHRLDRPTAGVLLFAKTVEARRPFQMMFQHR 212
>gi|296536195|ref|ZP_06898317.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
gi|296263477|gb|EFH09980.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
Length = 343
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + +ED LI L+KP+GL V P Q T++ L A ++ + + + P
Sbjct: 99 DIP--LTILFEDRHLIVLDKPAGLVVHPAPGNQDGTLVNALLAHAGEELTGIGGE-KRPG 155
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL + TSG+++ AK+++A T ++A FA +
Sbjct: 156 IVHRLDKDTSGVMVVAKSEVAHTALSAAFASR 187
>gi|398822585|ref|ZP_10580964.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
gi|398226816|gb|EJN13059.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
Length = 326
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDDD+I +NKP GL V P + T++ L S + P VHRL
Sbjct: 78 LDIVFEDDDIIVINKPKGLVVHPAAGHETGTLVNALIAHCGATLSGIGG-VRRPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK LA ++A FAD
Sbjct: 137 DKDTTGLMVVAKNDLAHASLSAQFAD 162
>gi|359727837|ref|ZP_09266533.1| pseudouridylate synthase [Leptospira weilii str. 2006001855]
gi|417778956|ref|ZP_12426754.1| RNA pseudouridine synthase [Leptospira weilii str. 2006001853]
gi|410780953|gb|EKR65534.1| RNA pseudouridine synthase [Leptospira weilii str. 2006001853]
Length = 385
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G+ +VY + KEP + EV YED+ +A+NKP L V P G ++
Sbjct: 59 SGKKVKSGILLREGNTVVYQPVGRKEPPIRTDYEVLYEDEFFVAVNKPGDLPVHPAGKYR 118
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 119 KGNLLTLLKE---------SGKFENLFTVHRLDRETSGVVLFAKDSKTASLLSGFFS 166
>gi|373854379|ref|ZP_09597177.1| pseudouridine synthase, RluA family [Opitutaceae bacterium TAV5]
gi|372472246|gb|EHP32258.1| pseudouridine synthase, RluA family [Opitutaceae bacterium TAV5]
Length = 341
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS-------LS 87
D+P L++ YED+ L+A+NKPSG+ V PG + T++ L ++Q++
Sbjct: 97 DIP--LDILYEDEHLLAVNKPSGMVVHPGSGTGEDTLVHALLGHCARQATEGGGGGLSGV 154
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P VHRL R T+G+++ AKT A +A FA +
Sbjct: 155 GGVERPGIVHRLDRETTGVIVVAKTDAAHRGLAEQFAGR 193
>gi|258543199|ref|YP_003188632.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01]
gi|384043121|ref|YP_005481865.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-12]
gi|384051638|ref|YP_005478701.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-03]
gi|384054745|ref|YP_005487839.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-07]
gi|384057980|ref|YP_005490647.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-22]
gi|384060621|ref|YP_005499749.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-26]
gi|384063913|ref|YP_005484555.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-32]
gi|384119922|ref|YP_005502546.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634277|dbj|BAI00253.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01]
gi|256637337|dbj|BAI03306.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-03]
gi|256640389|dbj|BAI06351.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-07]
gi|256643446|dbj|BAI09401.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-22]
gi|256646501|dbj|BAI12449.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-26]
gi|256649554|dbj|BAI15495.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-32]
gi|256652540|dbj|BAI18474.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655598|dbj|BAI21525.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-12]
Length = 337
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 12 KNSAPLQGAGSELVYHRLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
+ A + AG E+V +P P VP V YEDDDLI L+KP+GL V P +
Sbjct: 65 REPAAIARAGMEVVL-TIPPAAPAVPQGEDISFTVLYEDDDLIVLDKPAGLVVHPAPGNE 123
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
T++ L + + + P VHRL + TSG+++ AKT++A ++ FA +
Sbjct: 124 TGTLVNGLIAHCGESLKGIGGE-RRPGIVHRLDKDTSGVMVAAKTEMAHQALSEDFAAR 181
>gi|317504079|ref|ZP_07962082.1| ribosomal large subunit pseudouridine synthase D [Prevotella
salivae DSM 15606]
gi|315664821|gb|EFV04485.1| ribosomal large subunit pseudouridine synthase D [Prevotella
salivae DSM 15606]
Length = 355
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+G+ V PG T++ + W K +
Sbjct: 97 DIP--LDIVYEDDVLMVVNKPAGMVVHPGAGNFTGTLINAVAWHL-KDLKGFDANDPEVG 153
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 154 LVHRIDKDTSGLLVVAKTPEAKTVLGKQFFNKTT 187
>gi|375356872|ref|YP_005109644.1| ribosomal large subunit pseudouridine synthase [Bacteroides
fragilis 638R]
gi|383116783|ref|ZP_09937531.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|251947927|gb|EES88209.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|301161553|emb|CBW21093.1| ribosomal large subunit pseudouridine synthase [Bacteroides
fragilis 638R]
Length = 357
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + H
Sbjct: 104 DIP--LHIVYEDKYLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHL-KDDPVYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGVQFFNKTT 194
>gi|421597794|ref|ZP_16041336.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
gi|404270096|gb|EJZ34234.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
Length = 326
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDDD+I +NKP GL V P + T++ L S + P VHRL
Sbjct: 78 LDIVFEDDDIIVINKPKGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VRRPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK LA ++A FAD
Sbjct: 137 DKDTTGLMVVAKNDLAHASLSAQFAD 162
>gi|294650008|ref|ZP_06727396.1| RNA pseudouridine synthase [Acinetobacter haemolyticus ATCC 19194]
gi|292824101|gb|EFF82916.1| RNA pseudouridine synthase [Acinetobacter haemolyticus ATCC 19194]
Length = 302
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ E+ +E++DL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLAHEVHVPFQHEILFENEDLLVVDKPHFLTMSPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K A+ FA++
Sbjct: 132 GYKELT---------PIHRLDRETAGVVLFCKKASARGIYQQLFAER 169
>gi|75676616|ref|YP_319037.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74421486|gb|ABA05685.1| ribosomal large subunit pseudouridine synthase D [Nitrobacter
winogradskyi Nb-255]
Length = 351
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NKP GL V P T++ L + S + P VHRL
Sbjct: 103 LDIIYEDDDLIVINKPKGLVVHPAAGHHTGTLVNALIAHCGETLSGIGG-VCRPGIVHRL 161
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A + A FAD
Sbjct: 162 DKDTTGLMVAAKNDAAHKSLGAQFAD 187
>gi|317474426|ref|ZP_07933700.1| RluA family pseudouridine synthase [Bacteroides eggerthii
1_2_48FAA]
gi|316909107|gb|EFV30787.1| RluA family pseudouridine synthase [Bacteroides eggerthii
1_2_48FAA]
Length = 356
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K ++ H
Sbjct: 104 DIP--LNIVYEDKFLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDIPDYNANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTT 194
>gi|421849802|ref|ZP_16282776.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus NBRC 101655]
gi|421852654|ref|ZP_16285340.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371459419|dbj|GAB27979.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus NBRC 101655]
gi|371479158|dbj|GAB30543.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 334
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 12 KNSAPLQGAGSELVYHRLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
+ A + AG E+V +P P VP V YEDDDLI L+KP+GL V P +
Sbjct: 62 REPAAIARAGMEVVL-TIPPAAPAVPQGEDISFTVLYEDDDLIVLDKPAGLVVHPAPGNE 120
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
T++ L + + + P VHRL + TSG+++ AKT++A ++ FA +
Sbjct: 121 TGTLVNGLIAHCGESLKGIGGE-RRPGIVHRLDKDTSGVMVAAKTEMAHQALSEDFAAR 178
>gi|260593408|ref|ZP_05858866.1| ribosomal large subunit pseudouridine synthase D [Prevotella
veroralis F0319]
gi|260534684|gb|EEX17301.1| ribosomal large subunit pseudouridine synthase D [Prevotella
veroralis F0319]
Length = 366
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ L+ +NKP+GL V PG T++ + W K S
Sbjct: 109 DIP--LDIVYEDNALMVVNKPAGLVVHPGAGNFHGTLINAIAWHL-KDLPSFDPNDPEVG 165
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 166 LVHRIDKDTSGLLVIAKTPDAKTILGKQFFNKTT 199
>gi|51598281|ref|YP_072469.1| hypothetical protein BG0018 [Borrelia garinii PBi]
gi|51572852|gb|AAU06877.1| conserved hypothetical protein [Borrelia garinii PBi]
Length = 327
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + + P VHRL
Sbjct: 85 ITIIYEDSNIIVLNKPQGILSHPGISHWDDTVVNFLLYHIKRLKINFNEEKVRPGIVHRL 144
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK + +A F DK +
Sbjct: 145 DKDTSGVLICAKNINTLSFLAQQFKDKRT 173
>gi|328542559|ref|YP_004302668.1| RNA-pseudouridylate synthase, ribosomal large subunit D
[Polymorphum gilvum SL003B-26A1]
gi|326412305|gb|ADZ69368.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Polymorphum gilvum SL003B-26A1]
Length = 346
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L V YEDDDLI ++KP+GL V PG T++ L R S S
Sbjct: 92 KGEDIP--LVVVYEDDDLIVIDKPAGLVVHPGAGNWTGTLVNAL-IRHCGDSLSGIGGVR 148
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+L+ AKT A ++ FAD
Sbjct: 149 RPGIVHRLDKETSGLLVVAKTDAAHKGLSEQFAD 182
>gi|288929438|ref|ZP_06423283.1| ribosomal large subunit pseudouridine synthase D [Prevotella sp.
oral taxon 317 str. F0108]
gi|288329540|gb|EFC68126.1| ribosomal large subunit pseudouridine synthase D [Prevotella sp.
oral taxon 317 str. F0108]
Length = 349
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
+H + D+P L+V YEDD L+ +NKP+G+ V PG T++ + W + S
Sbjct: 87 HHDTTIEAEDIP--LDVVYEDDALMVINKPAGMVVHPGAGNFHGTLINAVAWHL-RNMPS 143
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ VHR+ + TSG+L+ AKT AK + F +KT+
Sbjct: 144 FDANDPEVGLVHRIDKDTSGLLVVAKTPEAKRKLGLQFFNKTT 186
>gi|383810375|ref|ZP_09965871.1| pseudouridine synthase, RluA family [Prevotella sp. oral taxon 306
str. F0472]
gi|383357120|gb|EID34608.1| pseudouridine synthase, RluA family [Prevotella sp. oral taxon 306
str. F0472]
Length = 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ L+ +NKP+GL V PG T++ + W K S
Sbjct: 108 DIP--LDIVYEDNALMVVNKPAGLVVHPGAGNFHGTLINAIAWHL-KDLPSFDPNDPEVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLVIAKTPDAKTILGKQFFNKTT 198
>gi|383774169|ref|YP_005453236.1| pseudouridine synthase-like protein [Bradyrhizobium sp. S23321]
gi|381362294|dbj|BAL79124.1| pseudouridine synthase-like protein [Bradyrhizobium sp. S23321]
Length = 335
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDDD++ LNKP GL V P + T++ L S + P VHRL
Sbjct: 87 LDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHCGTSLSGIGG-VRRPGIVHRL 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK LA + A FAD
Sbjct: 146 DKDTTGLMVVAKNDLAHASLTAQFAD 171
>gi|27382447|ref|NP_773976.1| pseudouridine synthase [Bradyrhizobium japonicum USDA 110]
gi|27355618|dbj|BAC52601.1| blr7336 [Bradyrhizobium japonicum USDA 110]
Length = 335
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDDD+I +NKP GL V P + T++ L S + P VHRL
Sbjct: 87 LDIVFEDDDIIVINKPRGLVVHPAAGHETGTLVNALIAHCGSTLSGIGG-VRRPGIVHRL 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK LA ++A FAD
Sbjct: 146 DKDTTGLMVVAKNDLAHASLSAQFAD 171
>gi|386398266|ref|ZP_10083044.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
gi|385738892|gb|EIG59088.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
Length = 335
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDDD++ LNKP GL V P + T++ L S + P VHRL
Sbjct: 87 LDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHCGSSLSGIGG-VRRPGIVHRL 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK LA + A FAD
Sbjct: 146 DKDTTGLMVVAKNDLAHASLTAQFAD 171
>gi|327312694|ref|YP_004328131.1| RluA family pseudouridine synthase [Prevotella denticola F0289]
gi|326946223|gb|AEA22108.1| pseudouridine synthase, RluA family [Prevotella denticola F0289]
Length = 361
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+GL V PG T++ + W K +
Sbjct: 105 DIP--LDIVYEDDVLMVINKPAGLVVHPGAGNFHGTLINAVAWHL-KDMPAFDPNDPEVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVVAKTPDAKTDLGRQFFNKTT 195
>gi|325860234|ref|ZP_08173359.1| pseudouridine synthase, RluA family [Prevotella denticola CRIS
18C-A]
gi|325482321|gb|EGC85329.1| pseudouridine synthase, RluA family [Prevotella denticola CRIS
18C-A]
Length = 361
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+GL V PG T++ + W K +
Sbjct: 105 DIP--LDIVYEDDVLMVINKPAGLVVHPGAGNFHGTLINAVAWHL-KDMPAFDPNDPEVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVVAKTPDAKTDLGRQFFNKTT 195
>gi|229496851|ref|ZP_04390560.1| ribosomal large subunit pseudouridine synthase D [Porphyromonas
endodontalis ATCC 35406]
gi|229316262|gb|EEN82186.1| ribosomal large subunit pseudouridine synthase D [Porphyromonas
endodontalis ATCC 35406]
Length = 359
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LEV YED+DL+ +NKP+G+ V PG T++ L + + + +
Sbjct: 107 DIP--LEVVYEDNDLLVVNKPAGMVVHPGNGNYTGTLVNALAY-YFRDDPKYDANDPNVG 163
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK AKT + F +KTS
Sbjct: 164 LVHRIDKDTSGLLVVAKRPEAKTALGKQFFEKTS 197
>gi|374577862|ref|ZP_09650958.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
gi|374426183|gb|EHR05716.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
Length = 335
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDDD++ LNKP GL V P + T++ L S + P VHRL
Sbjct: 87 LDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHCGSSLSGIGG-VRRPGIVHRL 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK LA + A FAD
Sbjct: 146 DKDTTGLMVVAKNDLAHASLTAQFAD 171
>gi|85714567|ref|ZP_01045554.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
gi|85698452|gb|EAQ36322.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
Length = 351
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+DLI +NKP GL V PG Q T++ L S + P VHRL
Sbjct: 103 LDIVYEDNDLIVINKPKGLVVHPGAGHQAGTLVNALIAHCGGSLSGIGG-VCRPGIVHRL 161
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++ FAD
Sbjct: 162 DKDTTGLMVAAKNDAAHKSLSTQFAD 187
>gi|219684788|ref|ZP_03539730.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia garinii PBr]
gi|219685395|ref|ZP_03540214.1| ribosomal large subunit pseudouridine synthase D [Borrelia garinii
Far04]
gi|219671733|gb|EED28788.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia garinii PBr]
gi|219673168|gb|EED30188.1| ribosomal large subunit pseudouridine synthase D [Borrelia garinii
Far04]
Length = 326
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + + P VHRL
Sbjct: 84 IAIIYEDSNIIVLNKPQGILSHPGISHWDDTVVNFLLYHIKRLKINFNEEKVRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK + +A F DK +
Sbjct: 144 DKDTSGVLICAKNINTLSFLAQQFKDKKT 172
>gi|417810294|ref|ZP_12456973.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius GJ-24]
gi|335349090|gb|EGM50590.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius GJ-24]
Length = 298
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + + S
Sbjct: 67 KLSLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHS---PLSTI 121
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ P VHR+ + TSG+L+ AK +A +A DKT++
Sbjct: 122 NGTYRPGIVHRIDKDTSGLLMVAKNDMAHQSLAKQLKDKTNI 163
>gi|336172856|ref|YP_004579994.1| RluA family pseudouridine synthase [Lacinutrix sp. 5H-3-7-4]
gi|334727428|gb|AEH01566.1| pseudouridine synthase, RluA family [Lacinutrix sp. 5H-3-7-4]
Length = 345
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP+G+ V PG T++ L + + S + P
Sbjct: 93 DLP--LDIVYEDDTLLVVNKPAGMVVHPGHGNYSGTLINALIYHFDNLPKNSSDR---PG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A ++ F DKTS
Sbjct: 148 LVHRIDKDTSGLLVVAKTEHAMAHLSKQFKDKTS 181
>gi|225010881|ref|ZP_03701348.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-3C]
gi|225004928|gb|EEG42883.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-3C]
Length = 379
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YED DL+ +NKP G+ V PG T++ L + + + P
Sbjct: 129 DIP--LDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVKDLPLNADER---PG 183
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT A T +A F DKTS
Sbjct: 184 LVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTS 217
>gi|386853428|ref|YP_006202713.1| hypothetical protein KK9_0018 [Borrelia garinii BgVir]
gi|408670651|ref|YP_006870722.1| hypothetical protein BgCN_0018 [Borrelia garinii NMJW1]
gi|365193462|gb|AEW68360.1| Hypothetical protein KK9_0018 [Borrelia garinii BgVir]
gi|407240473|gb|AFT83356.1| hypothetical protein BgCN_0018 [Borrelia garinii NMJW1]
Length = 326
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + + P VHRL
Sbjct: 84 IAIIYEDSNIIVLNKPQGILSHPGISHWDDTVVNFLLYHIKRLKINFNEEKVRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK + +A F DK +
Sbjct: 144 DKDTSGVLICAKNINTLSFLAQQFKDKRT 172
>gi|160938833|ref|ZP_02086184.1| hypothetical protein CLOBOL_03727 [Clostridium bolteae ATCC
BAA-613]
gi|158437796|gb|EDP15556.1| hypothetical protein CLOBOL_03727 [Clostridium bolteae ATCC
BAA-613]
Length = 294
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 33 EPDV---PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
EP++ P L++ YED DLI +NKP G+ V P T++ L + Q S ++
Sbjct: 60 EPEIDAEPMDLDILYEDQDLILINKPKGMVVHPAAGHYSHTLVNGLMYHCKDQLSGING- 118
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ T+G+++ K +A + IAA + +
Sbjct: 119 VMRPGIVHRIDMDTTGVIIACKNDMAHSSIAAQLKEHS 156
>gi|288800657|ref|ZP_06406114.1| ribosomal large subunit pseudouridine synthase D [Prevotella sp.
oral taxon 299 str. F0039]
gi|288332118|gb|EFC70599.1| ribosomal large subunit pseudouridine synthase D [Prevotella sp.
oral taxon 299 str. F0039]
Length = 358
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED +L+ +NKP+GL V PG T++ + W K + + + VHR+
Sbjct: 103 LDIVYEDAELLVVNKPAGLVVHPGVGNFHGTLINAVAWHM-KDDKNFDANSPEVGLVHRI 161
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + F +KT+
Sbjct: 162 DKDTSGLLVVAKTPNAKTKLGVQFFNKTT 190
>gi|319403704|emb|CBI77289.1| ribosomal large subunit pseudouridine synthase D [Bartonella
rochalimae ATCC BAA-1498]
Length = 333
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHR 98
+L++ +ED+ +I +NKP+GL V PG T++ L + S + P VHR
Sbjct: 79 VLDILFEDNHIIVINKPAGLVVHPGNGNWTGTLVNGLIYHCRDSLSGIGG-IKRPGIVHR 137
Query: 99 LGRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
L + TSG+++ AK LA + A FAD +TS +D
Sbjct: 138 LDKDTSGVMVIAKNDLAHRNLNAQFADHGRTSALD 172
>gi|421111024|ref|ZP_15571505.1| RNA pseudouridine synthase [Leptospira santarosai str. JET]
gi|410803457|gb|EKS09594.1| RNA pseudouridine synthase [Leptospira santarosai str. JET]
Length = 366
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G +VY + KEP V E+ YED+ +A+NKP L V P G ++
Sbjct: 53 SGKKIKSGILLREGETIVYQPVGRKEPPVRKDYEILYEDEFFVAVNKPGDLPVHPAGKYR 112
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 113 KGNLLILLKE---------SGRFENLFTVHRLDRETSGVVLFAKDSETASILSGFFS 160
>gi|395240816|ref|ZP_10417840.1| Pseudouridine synthase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475598|emb|CCI87817.1| Pseudouridine synthase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 311
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + +S S + P VHR+
Sbjct: 88 LDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNALLYHTKDLAS--SPEGFRPGIVHRI 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT A+ + A+K +
Sbjct: 146 DKDTSGLLMIAKTPTARESLEYQLANKIN 174
>gi|359788929|ref|ZP_09291894.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255234|gb|EHK58162.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 331
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDD LI LNKP GL V PG T++ L S + P
Sbjct: 77 DIP--LDILFEDDQLIVLNKPPGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VRRPG 133
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
VHRL + TSG+++ AKT A ++ FAD D
Sbjct: 134 IVHRLDKDTSGVMVVAKTDRAHQALSEAFADHGRASD 170
>gi|422004733|ref|ZP_16351946.1| pseudouridylate synthase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|417256570|gb|EKT85988.1| pseudouridylate synthase [Leptospira santarosai serovar Shermani
str. LT 821]
Length = 366
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G +VY + KEP V E+ YED+ +A+NKP L V P G ++
Sbjct: 53 SGKKIKSGILLREGETIVYQPVGRKEPPVRKDYEILYEDEFFVAVNKPGDLPVHPAGKYR 112
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 113 KGNLLILLKE---------SGRFENLFTVHRLDRETSGVVLFAKDSETASILSGFFS 160
>gi|384215677|ref|YP_005606843.1| hypothetical protein BJ6T_19750 [Bradyrhizobium japonicum USDA 6]
gi|354954576|dbj|BAL07255.1| hypothetical protein BJ6T_19750 [Bradyrhizobium japonicum USDA 6]
Length = 335
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDDD++ LNKP GL V P + T++ L S + P VHRL
Sbjct: 87 LDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLVNALIAHCGGSLSGIGG-VRRPGIVHRL 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK LA + A FAD
Sbjct: 146 DKDTTGLMVVAKNDLAHASLTAQFAD 171
>gi|15889714|ref|NP_355395.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Agrobacterium fabrum str. C58]
gi|15157624|gb|AAK88180.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Agrobacterium fabrum str. C58]
Length = 340
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YED+DLI L KP+GL V PG T++ L + S + P
Sbjct: 87 DIP--LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGG-VKRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + TSG+++ AK A +AA FAD
Sbjct: 144 IVHRLDKETSGVMVVAKNDNAHRHLAAQFAD 174
>gi|335036873|ref|ZP_08530188.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
ATCC 31749]
gi|333791697|gb|EGL63079.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
ATCC 31749]
Length = 340
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YED+DLI L KP+GL V PG T++ L + S + P
Sbjct: 87 DIP--LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGG-VKRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + TSG+++ AK A +AA FAD
Sbjct: 144 IVHRLDKETSGVMVVAKNDNAHRHLAAQFAD 174
>gi|153808958|ref|ZP_01961626.1| hypothetical protein BACCAC_03259 [Bacteroides caccae ATCC 43185]
gi|423220205|ref|ZP_17206700.1| RluA family pseudouridine synthase [Bacteroides caccae CL03T12C61]
gi|149128291|gb|EDM19510.1| pseudouridine synthase, RluA family [Bacteroides caccae ATCC 43185]
gi|392623282|gb|EIY17385.1| RluA family pseudouridine synthase [Bacteroides caccae CL03T12C61]
Length = 357
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED ++ +NKP+GL V PG T++ L W K + H
Sbjct: 104 DIP--LNIVYEDKYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHM-KDVPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTT 194
>gi|395778620|ref|ZP_10459132.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|423715067|ref|ZP_17689291.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
gi|395417828|gb|EJF84165.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|395430551|gb|EJF96593.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
Length = 334
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA +++ F+D +T +D
Sbjct: 140 DKNTSGVMVVAKNDLAHKSLSSQFSDHGRTCALD 173
>gi|357044193|ref|ZP_09105877.1| hypothetical protein HMPREF9138_02349 [Prevotella histicola F0411]
gi|355367743|gb|EHG15171.1| hypothetical protein HMPREF9138_02349 [Prevotella histicola F0411]
Length = 363
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ L+ +NKP+GL V PG T++ + W K +
Sbjct: 107 DIP--LDIVYEDEVLMVINKPAGLVVHPGAGNFHGTLINAIAWHL-KDIPEFDANDPEVG 163
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 164 LVHRIDKDTSGLLVIAKTPDAKTSLGKQFFNKTT 197
>gi|295132692|ref|YP_003583368.1| ribosomal large subunit pseudouridine synthase D [Zunongwangia
profunda SM-A87]
gi|294980707|gb|ADF51172.1| ribosomal large subunit pseudouridine synthase D [Zunongwangia
profunda SM-A87]
Length = 352
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+G+ V PG T++ L + ++ S + P VHR+
Sbjct: 100 LDIVYEDDTLLVVNKPAGMVVHPGHGNYSGTLINALVYHFENLPNNSSDR---PGLVHRI 156
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A ++ F DKTS
Sbjct: 157 DKDTSGLLVIAKTEHAMAHLSKQFFDKTS 185
>gi|218131974|ref|ZP_03460778.1| hypothetical protein BACEGG_03597 [Bacteroides eggerthii DSM 20697]
gi|217985850|gb|EEC52190.1| pseudouridine synthase, RluA family [Bacteroides eggerthii DSM
20697]
Length = 357
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ +NKP+GL V PG T++ + W K + H
Sbjct: 105 DIP--LNIVYEDKFLMVVNKPAGLVVHPGHGNYHGTLVNAIAWHM-KDIPDYDANDPHVG 161
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 162 LVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTT 195
>gi|373115711|ref|ZP_09529878.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670098|gb|EHO35186.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
7_1_58FAA]
Length = 304
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 18 QGAGSELVYHRLPWKEP-DV---PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+ A +++ RLP EP DV L+V YED D+I +NKP GL V P T++
Sbjct: 52 KAAAGDVLEVRLPEPEPVDVLPQAIPLDVAYEDADVIVVNKPVGLVVHPAAGHPDGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
L + + S ++ A P VHR+ R TSG+L+ AK A +AA D +
Sbjct: 112 ALLYHCGELLSGING-ALRPGIVHRIDRDTSGLLIAAKNDFAHQALAAQLQDHS 164
>gi|374333001|ref|YP_005083185.1| RluA family pseudouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359345788|gb|AEV39162.1| pseudouridine synthase, RluA family [Pseudovibrio sp. FO-BEG1]
Length = 349
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED+DLI ++KP+GL V PG T++ L S + P
Sbjct: 98 DIP--LTIVYEDEDLIVIDKPAGLVVHPGAGNPTGTLVNALIHHCGSSLSGIGG-VKRPG 154
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHR+ + T+G+L+ AK +A +AA FAD
Sbjct: 155 IVHRIDKDTTGLLVVAKNDMAHQGLAAQFAD 185
>gi|429218229|ref|YP_007179873.1| RluA family pseudouridine synthase [Deinococcus peraridilitoris DSM
19664]
gi|429129092|gb|AFZ66107.1| pseudouridine synthase, RluA family [Deinococcus peraridilitoris
DSM 19664]
Length = 319
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS--KQSSSLSSQASHPVPVH 97
L+V YEDD LIA+NKP G+ P T++ L R + +Q + + P VH
Sbjct: 80 LDVLYEDDQLIAVNKPPGMVTHPAPGVYSGTLVNALLGRGTLPEQDGARGPEGYRPGIVH 139
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
RL + TSG+++ AKT A +AA F ++ +
Sbjct: 140 RLDKDTSGVIVVAKTVGAHAVLAAAFKERET 170
>gi|409351550|ref|ZP_11234218.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
gi|407876703|emb|CCK86276.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
Length = 302
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 20 AGSELVYHRLPWK----EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
AG ++ + LP + EP ++P L++ YEDDD+I +NKP G+ V P T++
Sbjct: 55 AGDQIEVNILPLEPLDLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPAAGHPNHTLVNA 112
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L + + S + P VHR+ + TSG+L+ AK A+ + A A K++
Sbjct: 113 LLYHTRDLAD--SPEGFRPGIVHRIDKDTSGLLMVAKNAKARESLEAQLAQKSN 164
>gi|326386900|ref|ZP_08208514.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208580|gb|EGD59383.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
nitrogenifigens DSM 19370]
Length = 314
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED DLI ++KP+G+ V P T++ L Q S + A P
Sbjct: 79 DIP--LTVVYEDADLIVVDKPAGMVVHPAAGNPDGTLVNALLHHCRGQLSGIGGVAR-PG 135
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AKT +A +A FAD + V
Sbjct: 136 IVHRIDKDTSGLLVVAKTDVAHEGLARQFADHSIV 170
>gi|408411254|ref|ZP_11182423.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|407874547|emb|CCK84229.1| Pseudouridine synthase [Lactobacillus sp. 66c]
Length = 302
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 20 AGSELVYHRLPWK----EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
AG ++ + LP + EP ++P L++ YEDDD+I +NKP G+ V P T++
Sbjct: 55 AGDQIEVNILPLEPLDLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPAAGHPNHTLVNA 112
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L + + S + P VHR+ + TSG+L+ AK A+ + A A K++
Sbjct: 113 LLYHTRDLAD--SPEGFRPGIVHRIDKDTSGLLMVAKNAKARESLEAQLAQKSN 164
>gi|149280326|ref|ZP_01886447.1| pseudouridylate synthase, 23S RNA-specific [Pedobacter sp. BAL39]
gi|149228875|gb|EDM34273.1| pseudouridylate synthase, 23S RNA-specific [Pedobacter sp. BAL39]
Length = 343
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ +NKP+G+ V PG T++ L + +Q L P
Sbjct: 93 DIP--LDIVYEDNDLLVVNKPAGMVVHPGYNNYTGTLVNALAFHF-EQLPQLPGNEGRPG 149
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+LL +K ++ T +A F D +
Sbjct: 150 LVHRIDKDTSGLLLISKNEITMTKLAKQFFDHS 182
>gi|395786921|ref|ZP_10466648.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|423718160|ref|ZP_17692350.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
gi|395423219|gb|EJF89415.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|395426593|gb|EJF92720.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
Length = 341
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 88 LDILYEDNDIIVVNKPAGLVVHPGNGNTTGTMVNALIFHCGHSLSGIGG-VKRPGIVHRL 146
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+++ AK A ++ FAD
Sbjct: 147 DKDTSGVMVVAKNDNAHKNLSEQFAD 172
>gi|254473085|ref|ZP_05086483.1| ribosomal large subunit pseudouridine synthase D [Pseudovibrio sp.
JE062]
gi|211957806|gb|EEA93008.1| ribosomal large subunit pseudouridine synthase D [Pseudovibrio sp.
JE062]
Length = 349
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED+DLI ++KP+GL V PG T++ L S + P
Sbjct: 98 DIP--LTIVYEDEDLIVIDKPAGLVVHPGAGNPTGTLVNALIHHCGSSLSGIGG-VKRPG 154
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHR+ + T+G+L+ AK +A +AA FAD
Sbjct: 155 IVHRIDKDTTGLLVIAKNDMAHQGLAAQFAD 185
>gi|298368460|ref|ZP_06979778.1| RNA pseudouridine synthase [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282463|gb|EFI23950.1| RNA pseudouridine synthase [Neisseria sp. oral taxon 014 str.
F0314]
Length = 306
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 20 AGSELVYHRLPWK--EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
AG + Y+R + EP +P+ ++ + D+ LI ++KP L V P G F T+L +L+
Sbjct: 73 AGEVMYYYRETSRDSEPRIPFDEKILHVDEHLIVVDKPHFLPVTPSGRFLHETLLTRLRL 132
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
R Q ++ PVHRL + T+G++L + + A F DK
Sbjct: 133 RPELQHLNVGDIT----PVHRLDKDTAGVMLLSHNPAVRRHYQAMFQDK 177
>gi|422016625|ref|ZP_16363206.1| 23S rRNA pseudouridine synthase D [Providencia burhodogranariea DSM
19968]
gi|414092610|gb|EKT54285.1| 23S rRNA pseudouridine synthase D [Providencia burhodogranariea DSM
19968]
Length = 325
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W+ D+P L+V YEDDD++ +NKP GL V PG +T+L L +R + +
Sbjct: 77 WEPQDIP--LDVIYEDDDILVINKPRGLVVHPGAGNPDKTILNALLYRYPEIVDVPRAGI 134
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
VHRL + T+G+++ AKT A+T +
Sbjct: 135 -----VHRLDKDTTGLMVVAKTVPAQTRLV 159
>gi|218961736|ref|YP_001741511.1| Pseudouridylate synthase, 23S RNA-specific [Candidatus Cloacamonas
acidaminovorans]
gi|167730393|emb|CAO81305.1| Pseudouridylate synthase, 23S RNA-specific [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 351
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 17 LQGAGSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRT 70
L G E++ + LP EP D+P L+V YED+ L +NK +G+ V PG + T
Sbjct: 63 LLKEGDEVIIN-LPEPEPMNVLPQDIP--LDVVYEDEYLAIINKKAGMIVHPGFGNPEGT 119
Query: 71 VLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
++ + +R + SS + + P VHRL RGTSG+++ AK L ++ FA +
Sbjct: 120 LVNAILYRFGENLSS-GKEFNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARR 174
>gi|38234813|ref|NP_940580.1| hypothetical protein DIP2277 [Corynebacterium diphtheriae NCTC
13129]
gi|38201077|emb|CAE50801.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 349
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P EP +PY V YEDD L+ +KP L +P G + T +Q R S
Sbjct: 113 FYRIPAPEPTIPYSCTVVYEDDTLLVADKPPFLATMPRG--KHITNSATVQLRRSTGIDE 170
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 171 LS-------PAHRLDRLTSGLLLFTKRKRVRGAYQTLFSER 204
>gi|375291879|ref|YP_005126419.1| hypothetical protein CD241_2165 [Corynebacterium diphtheriae 241]
gi|376246715|ref|YP_005136954.1| hypothetical protein CDHC01_2165 [Corynebacterium diphtheriae HC01]
gi|371581550|gb|AEX45217.1| hypothetical protein CD241_2165 [Corynebacterium diphtheriae 241]
gi|372109345|gb|AEX75406.1| hypothetical protein CDHC01_2165 [Corynebacterium diphtheriae HC01]
Length = 349
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P EP +PY V YEDD L+ +KP L +P G + T +Q R S
Sbjct: 113 FYRIPAPEPTIPYSCTVVYEDDTLLVADKPPFLATMPRG--KHITNSATVQLRRSTGIDE 170
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 171 LS-------PAHRLDRLTSGLLLFTKRKRVRGAYQTLFSER 204
>gi|255327672|ref|ZP_05368738.1| pseudouridylate synthase [Rothia mucilaginosa ATCC 25296]
gi|255295346|gb|EET74697.1| pseudouridylate synthase [Rothia mucilaginosa ATCC 25296]
Length = 383
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G + Y R EP +P + V YED+ ++A++KP L P G + +T L +L R
Sbjct: 122 GERIWYFRELADEPQLPSDMPVLYEDEHVLAIDKPHFLPTTPRGAYIAQTALTKL--RVR 179
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+Q+ L +P+HRL R T+G+LL AKT A+ F +
Sbjct: 180 EQNPLL-------IPIHRLDRPTAGVLLFAKTVEARRPFQMMFQHR 218
>gi|94984711|ref|YP_604075.1| pseudouridine synthase [Deinococcus geothermalis DSM 11300]
gi|94554992|gb|ABF44906.1| Pseudouridine synthase, RluD [Deinococcus geothermalis DSM 11300]
Length = 341
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS--KQSSSLSSQASHPVPVH 97
L+V YED+ LIA+NKP G+ P T++ L R + +Q ++ P VH
Sbjct: 97 LDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYRPGIVH 156
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
RL + TSG+++ AKT A +AA F D+++
Sbjct: 157 RLDKDTSGVIVVAKTVEAHARLAAAFKDRST 187
>gi|365844925|ref|ZP_09385734.1| pseudouridine synthase, RluA family [Flavonifractor plautii ATCC
29863]
gi|364562519|gb|EHM40359.1| pseudouridine synthase, RluA family [Flavonifractor plautii ATCC
29863]
Length = 304
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 18 QGAGSELVYHRLPWKEP-DV---PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+ A +++ RLP EP DV L+V YED D+I +NKP GL V P T++
Sbjct: 52 KAAEGDVLEVRLPEPEPVDVLPQAIPLDVAYEDADVIVVNKPVGLVVHPAAGHPDGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
L + + S ++ A P VHR+ R TSG+L+ AK A +AA D +
Sbjct: 112 ALLYHCGESLSGING-ALRPGIVHRIDRDTSGLLIAAKNDFAHQALAAQLQDHS 164
>gi|225011533|ref|ZP_03701971.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-2A]
gi|225004036|gb|EEG42008.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-2A]
Length = 346
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDD L+ +NKP G+ V PG T+L L + + + + + P
Sbjct: 96 DMP--LDIVFEDDILVVVNKPPGMVVHPGHGNYSGTLLNGLLYHFDQLPKNSNER---PG 150
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T +A F DKTS
Sbjct: 151 LVHRIDKDTSGLLVIAKTEQAMTHLAKQFFDKTS 184
>gi|345884894|ref|ZP_08836290.1| hypothetical protein HMPREF0666_02466 [Prevotella sp. C561]
gi|345042243|gb|EGW46348.1| hypothetical protein HMPREF0666_02466 [Prevotella sp. C561]
Length = 366
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ L+ +NKP+GL V PG T++ + W + S
Sbjct: 108 DIP--LDIVYEDNVLMVVNKPAGLVVHPGAGNFHGTLINAVAWHL-RDMPSFDPNDPEVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLVIAKTPDAKTALGKQFFNKTT 198
>gi|283780614|ref|YP_003371369.1| RluA family pseudouridine synthase [Pirellula staleyi DSM 6068]
gi|283439067|gb|ADB17509.1| pseudouridine synthase, RluA family [Pirellula staleyi DSM 6068]
Length = 355
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +ED+ LIA+NKP G+ V P T+ L + +Q S++ Q P VHRL
Sbjct: 115 LDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHF-QQLSTVGGQ-HRPGIVHRL 172
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
R TSG+++ AKT +AA FAD+T+
Sbjct: 173 DRDTSGVIIVAKTDPVHFSLAAQFADRTT 201
>gi|83859151|ref|ZP_00952672.1| ribosomal large subunit pseudouridine synthase d [Oceanicaulis sp.
HTCC2633]
gi|83852598|gb|EAP90451.1| ribosomal large subunit pseudouridine synthase d [Oceanicaulis
alexandrii HTCC2633]
Length = 310
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P LEV +EDD LI +NKP+G+ V P T++ L + + S +
Sbjct: 54 KPEDIP--LEVLFEDDHLIVINKPAGMAVHPAAGNWTGTLVHALLFHCAGSLSGIGG-VE 110
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHRL + TSG+++ AKT A ++A FA T
Sbjct: 111 RPGIVHRLDKDTSGVMVAAKTDKAHQGLSAQFAAHT 146
>gi|239623975|ref|ZP_04667006.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522006|gb|EEQ61872.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 314
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 33 EPDV---PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
EP++ P L++ YED D+I +NKP G+ V P T++ L + Q S ++
Sbjct: 80 EPEIEAEPMDLDILYEDQDIILVNKPKGMVVHPAAGHYSHTLVNGLMYHCKNQLSGING- 138
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ T+G+L+ K +A IAA + +
Sbjct: 139 VMRPGIVHRIDMDTTGVLIVCKNDMAHNSIAAQLKEHS 176
>gi|58337436|ref|YP_194021.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
gi|58254753|gb|AAV42990.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
Length = 302
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + Q + S + P VHR+
Sbjct: 79 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--QDLAQSPEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A+KT+
Sbjct: 137 DKDTSGLLMIAKNATARESLEQQLANKTN 165
>gi|218661228|ref|ZP_03517158.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli IE4771]
Length = 260
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++F+EDDD+I ++KP+GL V PG T++ L + S + P
Sbjct: 6 DIP--LDIFHEDDDIIVISKPAGLVVHPGPGNWTGTLVNALIYHCGDTLSGIGG-VRRPG 62
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 63 IVHRLDKDTTGVMVVAKNDVAHRHLSLQFAD 93
>gi|323343928|ref|ZP_08084155.1| ribosomal large subunit pseudouridine synthase D [Prevotella oralis
ATCC 33269]
gi|323095747|gb|EFZ38321.1| ribosomal large subunit pseudouridine synthase D [Prevotella oralis
ATCC 33269]
Length = 355
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +ED +L+ +NKP+GL V PG T++ + W K S
Sbjct: 97 DIP--LDIVFEDSELMVINKPAGLVVHPGVGNFHGTLVNAIAWHL-KDLKSFDPNDPEVG 153
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT +AKT + F +KT+
Sbjct: 154 LVHRIDKDTSGLLVIAKTPMAKTKLGLQFFNKTT 187
>gi|347536599|ref|YP_004844024.1| putative 23S rRNA pseudouridine synthase [Flavobacterium
branchiophilum FL-15]
gi|345529757|emb|CCB69787.1| Probable 23S rRNA pseudouridine synthase [Flavobacterium
branchiophilum FL-15]
Length = 346
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ L+ +NKP+GL V PG T++ L + Q+ ++S + P
Sbjct: 92 DIP--LDIVYEDEALLLINKPAGLVVHPGHGNYTGTLVNALAFHF--QNLPMNS-SERPG 146
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T +A F KTS
Sbjct: 147 LVHRIDKDTSGLLVIAKTEAAMTHLAKQFEQKTS 180
>gi|315283354|ref|ZP_07871565.1| ribosomal large subunit pseudouridine synthase D [Listeria marthii
FSL S4-120]
gi|313613002|gb|EFR86933.1| ribosomal large subunit pseudouridine synthase D [Listeria marthii
FSL S4-120]
Length = 289
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP G++ P +++ T +Q+ K + Q +
Sbjct: 70 KIPVYAYDLEIIYEDDFLLVVNKPVGMKTHPNDSYERDTCANAVQYYLEK-----TGQEA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|227904070|ref|ZP_04021875.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
gi|227868089|gb|EEJ75510.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
Length = 305
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + Q + S + P VHR+
Sbjct: 82 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--QDLAQSPEGFRPGIVHRI 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A+KT+
Sbjct: 140 DKDTSGLLMIAKNATARESLEQQLANKTN 168
>gi|376252318|ref|YP_005139199.1| hypothetical protein CDHC03_2156 [Corynebacterium diphtheriae HC03]
gi|372113822|gb|AEX79881.1| hypothetical protein CDHC03_2156 [Corynebacterium diphtheriae HC03]
Length = 349
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
++ ++R+P EP +PY V YEDD L+ +KP L +P G + T +Q R S
Sbjct: 108 NDDVWFYRIPAPEPTIPYSCTVVYEDDTLLVADKPPFLATMPRG--KHITNSATVQLRRS 165
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 166 TGIDELS-------PAHRLDRLTSGLLLFTKRKRVRGAYQTLFSER 204
>gi|347549632|ref|YP_004855960.1| putative ribosomal large subunit pseudouridine synthase [Listeria
ivanovii subsp. ivanovii PAM 55]
gi|346982703|emb|CBW86722.1| Putative ribosomal large subunit pseudouridine synthase [Listeria
ivanovii subsp. ivanovii PAM 55]
Length = 289
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP G++ P ++ T +Q+ K ++Q +
Sbjct: 70 KIPVYDYDLEIIYEDDFLLVVNKPVGMKTHPNDSYETDTCANAVQYYLEK-----TNQEA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|374385236|ref|ZP_09642744.1| RluA family pseudouridine synthase [Odoribacter laneus YIT 12061]
gi|373226441|gb|EHP48767.1| RluA family pseudouridine synthase [Odoribacter laneus YIT 12061]
Length = 352
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+ ++ +NKP+G+ V P T++ L W K + ++ P VHR+
Sbjct: 105 LDIVYEDEQVMVINKPAGMVVHPAFGHFSGTLVNALVWHL-KDNPLFTTNDIRPGLVHRI 163
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ AK +A F +KTS
Sbjct: 164 DKDTSGLLVIAKTEQAKAHLALQFFNKTS 192
>gi|92118358|ref|YP_578087.1| pseudouridine synthase RluD [Nitrobacter hamburgensis X14]
gi|91801252|gb|ABE63627.1| ribosomal large subunit pseudouridine synthase D [Nitrobacter
hamburgensis X14]
Length = 264
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NKP GL V P + T++ L S + P VHRL
Sbjct: 16 LDIVYEDDDLIVVNKPKGLVVHPAAGHEAGTLVNALIAHCGGSLSGIGG-VCRPGIVHRL 74
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 75 DKDTTGLMVAAKNDAAHKSLSAQFAD 100
>gi|395792031|ref|ZP_10471470.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714079|ref|ZP_17688338.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421226|gb|EJF87482.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432950|gb|EJF98924.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 332
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NKP+GL V PG T++ L S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCGNSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK LA ++A F+D +T +D
Sbjct: 140 DKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALD 173
>gi|49473932|ref|YP_031974.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
gi|49239435|emb|CAF25784.1| Ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
Length = 334
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NK +GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNALIYHCGDSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSGI++ AK LA ++A F+D +TS +D
Sbjct: 140 DKNTSGIMVVAKNDLAHKNLSAQFSDHGRTSALD 173
>gi|422325444|ref|ZP_16406479.1| hypothetical protein HMPREF0737_01589 [Rothia mucilaginosa M508]
gi|353343161|gb|EHB87480.1| hypothetical protein HMPREF0737_01589 [Rothia mucilaginosa M508]
Length = 381
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G + Y R EP +P + V YED+ ++A++KP L P G + +T L +L R
Sbjct: 117 GERIWYFRELADEPQLPSDMPVLYEDEHVLAIDKPHFLPTTPRGSYIAQTALTKL--RVR 174
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+Q+ L +P+HRL R T+G+LL AKT A+ F +
Sbjct: 175 EQNPLL-------IPIHRLDRPTAGVLLFAKTVEARRPFQMMFQHR 213
>gi|336064535|ref|YP_004559394.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pasteurianus ATCC 43144]
gi|334282735|dbj|BAK30308.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
pasteurianus ATCC 43144]
Length = 298
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YEDDD+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYTAENIP--LDIIYEDDDVAVVNKPQGMVVHPSVGHTSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VIRPGIVHRIDKDTSGLLMIAKNDTAHNALAAELKDKKSL 161
>gi|445116113|ref|ZP_21378444.1| RluA family pseudouridine synthase [Prevotella nigrescens F0103]
gi|444840203|gb|ELX67241.1| RluA family pseudouridine synthase [Prevotella nigrescens F0103]
Length = 363
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED++++ +NKP+GL V PG + T++ + W + +
Sbjct: 108 DMP--LNVVYEDNEIMVINKPAGLVVHPGAGNFRGTLINAIAWHL-RDLKNFDPNDPAVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+LL AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLLIAKTPDAKTFLGKQFFNKTT 198
>gi|357055398|ref|ZP_09116466.1| hypothetical protein HMPREF9467_03438 [Clostridium clostridioforme
2_1_49FAA]
gi|355382517|gb|EHG29614.1| hypothetical protein HMPREF9467_03438 [Clostridium clostridioforme
2_1_49FAA]
Length = 303
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 33 EPDV---PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
EP++ P L++ YED D+I +NKP G+ V P T++ L + Q S +S
Sbjct: 69 EPEIDAEPMDLDILYEDQDVILINKPKGMVVHPAAGHYSHTLVNGLMYHCRDQLSGISG- 127
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ T+G+++ K +A + IAA + +
Sbjct: 128 VIRPGIVHRIDMDTTGVIIACKNDMAHSSIAAQLKEHS 165
>gi|373495389|ref|ZP_09585974.1| hypothetical protein HMPREF0380_01612 [Eubacterium infirmum F0142]
gi|371964867|gb|EHO82371.1| hypothetical protein HMPREF0380_01612 [Eubacterium infirmum F0142]
Length = 315
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED+D+I ++KP G+ V PG T++ L + L +A P VHR+
Sbjct: 86 LNIIYEDEDIIVIDKPRGMVVHPGAGNYNSTLVNALLHHVGEDLREL-GEADRPGIVHRI 144
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFA 124
+ TSGIL+ AK+KLA + F+
Sbjct: 145 DKDTSGILVVAKSKLAFDSLKEQFS 169
>gi|365888371|ref|ZP_09427141.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3809]
gi|365335954|emb|CCD99672.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3809]
Length = 331
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I ++KPSGL V P + T++ L S + P VHRL
Sbjct: 83 LDIVYEDDDIIVIDKPSGLVVHPAAGHESGTLVNALIAHCGASLSGIGG-VRRPGIVHRL 141
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 142 DKDTTGLMVVAKNDHAHASLSAQFAD 167
>gi|340350317|ref|ZP_08673311.1| ribosomal large subunit pseudouridine synthase D [Prevotella
nigrescens ATCC 33563]
gi|339608627|gb|EGQ13516.1| ribosomal large subunit pseudouridine synthase D [Prevotella
nigrescens ATCC 33563]
Length = 363
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED++++ +NKP+GL V PG + T++ + W + +
Sbjct: 108 DMP--LNVVYEDNEIMVINKPAGLVVHPGAGNFRGTLINAIAWHL-RDLKNFDPNDPAVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+LL AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLLIAKTPDAKTFLGKQFFNKTT 198
>gi|340616685|ref|YP_004735138.1| ribosomal large subunit pseudouridine synthase D [Zobellia
galactanivorans]
gi|339731482|emb|CAZ94747.1| Ribosomal large subunit pseudouridine synthase D [Zobellia
galactanivorans]
Length = 342
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P +++ YEDD L+ +NKP+G+ V PG T++ L + + + P
Sbjct: 92 DIP--IDIVYEDDVLLVVNKPAGMVVHPGHGNYSGTLINALLHHIKDLPVNSNER---PG 146
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T +A F DKTS
Sbjct: 147 LVHRIDKDTSGLLVVAKTEAAMTHLAKQFFDKTS 180
>gi|282879373|ref|ZP_06288116.1| pseudouridine synthase, RluA family [Prevotella buccalis ATCC
35310]
gi|281298486|gb|EFA90912.1| pseudouridine synthase, RluA family [Prevotella buccalis ATCC
35310]
Length = 355
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED DL+ +NK G+ V PG T++ + W K +S +
Sbjct: 97 DIP--LDIVYEDSDLMVVNKAPGMVVHPGAGNFHGTLINAVAWHL-KDLTSFDANDPAVG 153
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT +AKT + F +KT+
Sbjct: 154 LVHRIDKDTSGLLVIAKTPVAKTKLGLQFFNKTT 187
>gi|49066398|gb|AAT49291.1| putative bacteriocin [Prevotella nigrescens]
gi|242332477|tpg|DAA06525.1| TPA_exp: NigA [Prevotella nigrescens]
Length = 363
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED++++ +NKP+GL V PG + T++ + W + +
Sbjct: 108 DMP--LNVVYEDNEIMVINKPAGLVVHPGAGNFRGTLINAIAWHL-RDLKNFDPNDPAVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+LL AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLLIAKTPDAKTFLGKQFFNKTT 198
>gi|317131689|ref|YP_004091003.1| RluA family pseudouridine synthase [Ethanoligenens harbinense
YUAN-3]
gi|315469668|gb|ADU26272.1| pseudouridine synthase, RluA family [Ethanoligenens harbinense
YUAN-3]
Length = 302
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 20 AGSELVYH-----RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
AG E+V L K D+P +EV YEDDDL+ +NKP G+ V PG T++
Sbjct: 57 AGDEIVVEFPDPVPLEAKAQDIP--IEVVYEDDDLLVVNKPQGMVVHPGAGNPDGTLVNA 114
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
L + S + P VHR+ + TSG+L+ AK A +AA
Sbjct: 115 LLFHCGDSLSGIGG-VLRPGIVHRIDKDTSGLLMVAKNDRAHQSLAA 160
>gi|425746282|ref|ZP_18864312.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-323]
gi|425486159|gb|EKU52531.1| pseudouridine synthase, RluA family [Acinetobacter baumannii
WC-323]
Length = 299
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
+ + Y+R E VP+ E+ +E++DL+ ++KP L + P G + Q T+L +L+ +
Sbjct: 70 NTHIFYYRFLANEIHVPFQHEILFENEDLLVVDKPHFLTMTPTGQYVQETLLVRLKKQTG 129
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ P+HRL R T+G++L KT + FA++
Sbjct: 130 YAELT---------PIHRLDRETAGVVLFCKTPATRGIYQQLFAER 166
>gi|383501144|ref|YP_005414503.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Rickettsia australis str. Cutlack]
gi|378932155|gb|AFC70660.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Rickettsia australis str. Cutlack]
Length = 329
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 29 LPWKEPD------VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
+KEP+ L++ YEDDDLI +NK +G+ V PG T++ L + +K
Sbjct: 62 FSFKEPEELKIAAANIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYH-TKN 120
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
S + S A+ P VHRL + T+G+++ AK A +A
Sbjct: 121 LSDIGS-AARPGIVHRLDKDTTGLMVVAKNNKAHMLLA 157
>gi|332654861|ref|ZP_08420603.1| ribosomal large subunit pseudouridine synthase D [Ruminococcaceae
bacterium D16]
gi|332516204|gb|EGJ45812.1| ribosomal large subunit pseudouridine synthase D [Ruminococcaceae
bacterium D16]
Length = 301
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YEDDD+I +NKP GL V P T++ L + S ++ + P VHR+
Sbjct: 78 LDVVYEDDDVIVVNKPVGLVVHPAPGHPDGTLVNALLYHCGDSLSGINGELR-PGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
R TSG+++ AK A +AA D T
Sbjct: 137 DRDTSGLIIAAKNDRAHLALAAQLQDHT 164
>gi|400288724|ref|ZP_10790756.1| pseudouridine synthase RluD [Psychrobacter sp. PAMC 21119]
Length = 446
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP---- 95
++V YEDDD++ +NKP G+ V PG Q T++ L + +Q H +P
Sbjct: 207 IDVVYEDDDVLVINKPVGMVVHPGAGNQTGTLVNALLYHYPQQ---------HHLPRAGL 257
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+LL KTK A+ + DK+
Sbjct: 258 VHRIDKDTSGLLLIGKTKPAQMALMDQLKDKS 289
>gi|392964574|ref|ZP_10329995.1| pseudouridine synthase, RluA family [Fibrisoma limi BUZ 3]
gi|387847469|emb|CCH52039.1| pseudouridine synthase, RluA family [Fibrisoma limi BUZ 3]
Length = 363
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDD+L+ LNKP+G+ V P TV+ L + ++ + A P VHR+
Sbjct: 117 LNIIYEDDELLVLNKPAGMVVHPAYGNWNGTVVNALVYHFQNLPTTQNGVAR-PGLVHRI 175
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+++ AKT+ A T +A F D T
Sbjct: 176 DKDTSGLMVIAKTEYAMTHLARQFYDHT 203
>gi|116873677|ref|YP_850458.1| ribosomal large subunit pseudouridine synthase D [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|116742555|emb|CAK21679.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 289
Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP G++ P ++ T +Q+ K + Q +
Sbjct: 70 KIPVYEYDLEIIYEDDFLLVVNKPVGMKTHPNDSYETDTCANAVQYYLEK-----TDQEA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|257460774|ref|ZP_05625875.1| ribosomal large subunit pseudouridine synthase D [Campylobacter
gracilis RM3268]
gi|257442105|gb|EEV17247.1| ribosomal large subunit pseudouridine synthase D [Campylobacter
gracilis RM3268]
Length = 495
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 1 LTLIEFYSTKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQV 60
L+ E + SAP Q + L + +E+ YEDDDL+ +NKP+GL V
Sbjct: 50 LSAGELVRIDYPASAPQQTSAERLNFD------------VEILYEDDDLLVVNKPAGLTV 97
Query: 61 LPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
P ++ T++ L+ R S+L + + VHRL + TSG LL AK A ++
Sbjct: 98 HPAASVKEPTLVDWLKSRGY-LLSTLGGELRAGI-VHRLDKLTSGALLVAKNNAAHAALS 155
Query: 121 AYFADKT 127
A +DK+
Sbjct: 156 AQLSDKS 162
>gi|376255330|ref|YP_005143789.1| hypothetical protein CDPW8_2241 [Corynebacterium diphtheriae PW8]
gi|372118414|gb|AEX70884.1| hypothetical protein CDPW8_2241 [Corynebacterium diphtheriae PW8]
Length = 349
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
++ ++R+P EP +PY V YEDD L+ +KP L +P G + T +Q R S
Sbjct: 108 NDDVWFYRIPAPEPTIPYSCTVVYEDDTLLVADKPPFLATMPRG--KHITNSATVQLRRS 165
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 166 TGIDELS-------PAHRLDRLTSGLLLFTKHKWVRGAYQTLFSER 204
>gi|288905537|ref|YP_003430759.1| ribosomal large subunit pseudouridine synthase [Streptococcus
gallolyticus UCN34]
gi|386337983|ref|YP_006034152.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732263|emb|CBI13830.1| putative ribosomal large subunit pseudouridine synthase
[Streptococcus gallolyticus UCN34]
gi|334280619|dbj|BAK28193.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 298
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YEDDD+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYTAENIP--LDIIYEDDDVAVVNKPQGMVVHPSVGHMSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VIRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|254461389|ref|ZP_05074805.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium HTCC2083]
gi|206677978|gb|EDZ42465.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium HTCC2083]
Length = 341
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L+V YEDDDLI +NKP+G+ V P T++ L + + S + +
Sbjct: 79 EPEDIP--LDVMYEDDDLIVVNKPAGMVVHPAPGTPSGTLVNALLHHFAGKLSGVGG-SK 135
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHR+ + T+G+L+ AK+ A +AA FA T+
Sbjct: 136 RPGVVHRIDKETTGLLVVAKSDAAHHGLAAQFAAHTA 172
>gi|389876793|ref|YP_006370358.1| Pseudouridylate synthase, 23S RNA-specific [Tistrella mobilis
KA081020-065]
gi|388527577|gb|AFK52774.1| Pseudouridylate synthase, 23S RNA-specific [Tistrella mobilis
KA081020-065]
Length = 405
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP+ P L++ YED+ LI ++KP+GL V PG + T++ L + SS+ + +
Sbjct: 154 EPE-PMALDIVYEDEWLIVVDKPAGLVVHPGAGNDRGTLVSGLLAHGDGRLSSIGA-PTR 211
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ + TSG+++ AKT A +A FAD T
Sbjct: 212 PGVVHRIDKDTSGLIVFAKTDAAHLALARQFADHT 246
>gi|374851289|dbj|BAL54254.1| ribosomal large subunit pseudouridine synthase D [uncultured
candidate division OP1 bacterium]
gi|374857430|dbj|BAL60283.1| ribosomal large subunit pseudouridine synthase D [uncultured
candidate division OP1 bacterium]
Length = 337
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 22 SELVYHRLPWKEPDV-----PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
++L+ LP K P P+ L V YED +IA++KPSG+ V P TV+ QL
Sbjct: 59 NDLIEIELPDKPPHTTVEPEPFTLPVLYEDSHIIAIDKPSGMVVYPAAGHPNGTVINQLL 118
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ S + P VHRL GTSG+LL AK+ A + F ++
Sbjct: 119 SHCALASFGAPQR---PGIVHRLDEGTSGVLLVAKSDAAYLRLVEQFKNR 165
>gi|254804732|ref|YP_003082953.1| pseudouridylate synthase [Neisseria meningitidis alpha14]
gi|254668274|emb|CBA05164.1| pseudouridylate synthase [Neisseria meningitidis alpha14]
Length = 307
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|86747580|ref|YP_484076.1| pseudouridine synthase RluD [Rhodopseudomonas palustris HaA2]
gi|86570608|gb|ABD05165.1| ribosomal large subunit pseudouridine synthase D [Rhodopseudomonas
palustris HaA2]
Length = 324
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ +EDDD+I +NKP GL V P + T++ L + S + P VHRL
Sbjct: 76 LEIVHEDDDIIVINKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGG-VRRPGIVHRL 134
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 135 DKDTTGLMVAAKNDRAHQSLSAQFAD 160
>gi|330993274|ref|ZP_08317210.1| Ribosomal large subunit pseudouridine synthase D [Gluconacetobacter
sp. SXCC-1]
gi|329759676|gb|EGG76184.1| Ribosomal large subunit pseudouridine synthase D [Gluconacetobacter
sp. SXCC-1]
Length = 323
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED DLI L+KP+G+ V P + T++ L + + + + P VHRL
Sbjct: 85 LDILYEDRDLIVLDKPAGMVVHPAPGNEDGTLVNALLAHCGESLTGIGGE-KRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSGI++ AKT+LA ++ FA++
Sbjct: 144 DKDTSGIMVAAKTELAHQALSLAFAER 170
>gi|365904068|ref|ZP_09441827.1| pseudouridine synthase [Lactobacillus versmoldensis KCTC 3814]
Length = 297
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD++ +NKP G+ V P + T++ + + + L P
Sbjct: 75 DIP--LDIVYEDDDVLVVNKPQGMVVHPAAGHRDGTLVNAILYHSKINDDDLIR----PG 128
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AK LAK + +K+++
Sbjct: 129 IVHRIDKDTSGLLMVAKNNLAKQSLMNQLKEKSNL 163
>gi|409386178|ref|ZP_11238635.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
raffinolactis 4877]
gi|399206541|emb|CCK19550.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
raffinolactis 4877]
Length = 299
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YEDDD+ +NKP G+ V P Q T++ L + + SS + P VHR+
Sbjct: 76 LEIVYEDDDVAVINKPQGMVVHPSAGHQTGTLVNALMYHMTNLSS--INGVIRPGIVHRI 133
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A +A + TS
Sbjct: 134 DKDTSGLLMVAKNDQAHEFLATQLKEHTS 162
>gi|149371695|ref|ZP_01891111.1| ribosomal large subunit pseudouridine synthase D [unidentified
eubacterium SCB49]
gi|149355322|gb|EDM43882.1| ribosomal large subunit pseudouridine synthase D [unidentified
eubacterium SCB49]
Length = 348
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+++ YEDDDL+ +NK G+ V PG T++ L ++ S++ P VHR+
Sbjct: 98 IDIVYEDDDLLVVNKQPGMVVHPGHGNYSGTLINALIHHIDNLPNNSSNR---PGLVHRI 154
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T +A F DKT+
Sbjct: 155 DKDTSGLLVVAKTEEAMTHLAKQFFDKTT 183
>gi|414163774|ref|ZP_11420021.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410881554|gb|EKS29394.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 343
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDL+ LNKP GL V P + T++ L S + P VHRL
Sbjct: 95 LDIVYEDDDLLVLNKPKGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VRRPGIVHRL 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A + A FAD
Sbjct: 154 DKDTTGLMVVAKNDRAHQSLTAQFAD 179
>gi|227890823|ref|ZP_04008628.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius ATCC 11741]
gi|227867232|gb|EEJ74653.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius ATCC 11741]
Length = 301
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + + S
Sbjct: 70 KLSLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHS---PLSTI 124
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ P VHR+ + TSG+L+ AK +A +A DKT+
Sbjct: 125 NGTYRPGIVHRIDKDTSGLLMVAKNDMAHQSLAKQLKDKTN 165
>gi|392989594|ref|YP_006488187.1| 23S rRNA pseudouridine synthase D [Enterococcus hirae ATCC 9790]
gi|392337014|gb|AFM71296.1| 23S rRNA pseudouridine synthase D [Enterococcus hirae ATCC 9790]
Length = 303
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + D+P LE+ YED+ + +NKP G+ V P T++ L + K SS++
Sbjct: 69 LSIEAEDIP--LEIVYEDEAVAVVNKPQGMVVHPSAGHPNGTMVNALMYHV-KDLSSING 125
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK LA +A DKTS+
Sbjct: 126 -VIRPGIVHRIDKDTSGLLMVAKNDLAHESLAKQLKDKTSL 165
>gi|375090784|ref|ZP_09737096.1| RluA family pseudouridine synthase [Facklamia languida CCUG 37842]
gi|374564946|gb|EHR36225.1| RluA family pseudouridine synthase [Facklamia languida CCUG 37842]
Length = 313
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YEDDDL+ +NKP+GL V P T++ L + Q SS SQA P VHR+
Sbjct: 84 LEIVYEDDDLLVVNKPAGLVVHPAKGHATGTLVNGLIYYLKGQLSS-GSQAYRPGIVHRI 142
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ TSG+L+ AK A ++
Sbjct: 143 DKDTSGLLVVAKNDAAHQALS 163
>gi|15672980|ref|NP_267154.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis Il1403]
gi|281491492|ref|YP_003353472.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|385830534|ref|YP_005868347.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|418038114|ref|ZP_12676463.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723945|gb|AAK05096.1|AE006334_2 pseudouridine synthase [Lactococcus lactis subsp. lactis Il1403]
gi|281375210|gb|ADA64723.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|326406542|gb|ADZ63613.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|354693792|gb|EHE93525.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374673048|dbj|BAL50939.1| pseudouridine synthase [Lactococcus lactis subsp. lactis IO-1]
Length = 301
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LE+ YED D+ +NKP G+ V P T++ + + K SS++ P
Sbjct: 74 DLP--LEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMYHI-KDLSSING-VIRPG 129
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +AA DKTS
Sbjct: 130 IVHRIDKDTSGLLMIAKNDKAHESLAAQLKDKTS 163
>gi|90961803|ref|YP_535719.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
gi|385840423|ref|YP_005863747.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
gi|90820997|gb|ABD99636.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
gi|300214544|gb|ADJ78960.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
Length = 298
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + + S
Sbjct: 67 KLSLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHS---PLSTI 121
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ P VHR+ + TSG+L+ AK +A +A DKT+
Sbjct: 122 NGTYRPGIVHRIDKDTSGLLMVAKNDMAHQSLAKQLKDKTN 162
>gi|89055892|ref|YP_511343.1| ribosomal large subunit pseudouridine synthase D [Jannaschia sp.
CCS1]
gi|88865441|gb|ABD56318.1| ribosomal large subunit pseudouridine synthase D [Jannaschia sp.
CCS1]
Length = 310
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDDDLI +NKP+G+ V P T++ L + S + + P
Sbjct: 57 DIP--LDIVHEDDDLIVVNKPAGMVVHPAPGSPSGTLVNALLHHFGGKLSGVGGE-KRPG 113
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK+ A +AA FAD +
Sbjct: 114 IVHRIDKDTSGLLVVAKSDRAHHGLAAQFADHS 146
>gi|357417148|ref|YP_004930168.1| pseudouridine synthase [Pseudoxanthomonas spadix BD-a59]
gi|355334726|gb|AER56127.1| pseudouridine synthase [Pseudoxanthomonas spadix BD-a59]
Length = 293
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG E+VY R EP +P+ + + D+ L+ +KP L V+P G F + T+L +LQ R
Sbjct: 65 AGQEIVYFREVAHEPAIPFSETILHHDEHLLVADKPHFLPVVPAGRFVRETLLARLQART 124
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
++L VP+HR+ R T+G++L + + A F ++
Sbjct: 125 G--CATL-------VPLHRIDRDTAGLVLFSTDPATRGAYQALFRER 162
>gi|160885528|ref|ZP_02066531.1| hypothetical protein BACOVA_03528 [Bacteroides ovatus ATCC 8483]
gi|293371714|ref|ZP_06618125.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CMC 3f]
gi|299147380|ref|ZP_07040445.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
3_1_23]
gi|336415268|ref|ZP_08595609.1| hypothetical protein HMPREF1017_02717 [Bacteroides ovatus
3_8_47FAA]
gi|383110761|ref|ZP_09931580.1| RluA family pseudouridine synthase [Bacteroides sp. D2]
gi|423290304|ref|ZP_17269153.1| RluA family pseudouridine synthase [Bacteroides ovatus CL02T12C04]
gi|423294392|ref|ZP_17272519.1| RluA family pseudouridine synthase [Bacteroides ovatus CL03T12C18]
gi|156109150|gb|EDO10895.1| pseudouridine synthase, RluA family [Bacteroides ovatus ATCC 8483]
gi|292633411|gb|EFF51981.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CMC 3f]
gi|298514658|gb|EFI38542.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
3_1_23]
gi|313694336|gb|EFS31171.1| RluA family pseudouridine synthase [Bacteroides sp. D2]
gi|335941301|gb|EGN03159.1| hypothetical protein HMPREF1017_02717 [Bacteroides ovatus
3_8_47FAA]
gi|392665691|gb|EIY59214.1| RluA family pseudouridine synthase [Bacteroides ovatus CL02T12C04]
gi|392675583|gb|EIY69024.1| RluA family pseudouridine synthase [Bacteroides ovatus CL03T12C18]
Length = 357
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED L+ +NKP+GL V PG T++ L W K + H VHR+
Sbjct: 107 LTIVYEDPYLMVVNKPAGLVVHPGHGNYHGTLVNALAWHM-KDIPDYDANDPHVGLVHRI 165
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + F +KT+
Sbjct: 166 DKDTSGLLVIAKTPDAKTNLGIQFFNKTT 194
>gi|395800791|ref|ZP_10480063.1| RluA family pseudouridine synthase [Flavobacterium sp. F52]
gi|395437199|gb|EJG03121.1| RluA family pseudouridine synthase [Flavobacterium sp. F52]
Length = 347
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NKP GL V PG T++ L + + S + P
Sbjct: 93 DIP--LDIVYEDDALLLINKPPGLVVHPGHGNYTGTLVNALAFHFENLPMNSSER---PG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T +A F KT+
Sbjct: 148 LVHRIDKDTSGLLVVAKTEAAMTHLAKQFEAKTT 181
>gi|390452025|ref|ZP_10237581.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
gi|389660237|gb|EIM71944.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
Length = 267
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 30 PWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
P EP P LEV YEDD LI +NKP+GL V P T++ L S
Sbjct: 1 PEAEPAEPKAEAIPLEVLYEDDALIVINKPAGLVVHPAPGNWSGTLVNALLHHCGASLSG 60
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ P VHRL R TSG+++ AKT A ++ FAD
Sbjct: 61 IGG-VRRPGIVHRLDRDTSGVMVVAKTDNAHRLLSETFAD 99
>gi|262046428|ref|ZP_06019390.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
gi|260573299|gb|EEX29857.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
Length = 303
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + ++ + S + P VHR+
Sbjct: 79 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHS--KALAQSPEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT A+ + A KT+
Sbjct: 137 DKDTSGLLMIAKTAKARESLEDQLAHKTN 165
>gi|306837150|ref|ZP_07470087.1| RNA pseudouridine synthase [Corynebacterium accolens ATCC 49726]
gi|304566998|gb|EFM42626.1| RNA pseudouridine synthase [Corynebacterium accolens ATCC 49726]
Length = 313
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 19 GAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G ++ ++R+P E VPY + + YEDD+++ +KP + +P T +L R
Sbjct: 68 GKDVDVFFYRIPAPETPVPYDIPIIYEDDNILVADKPPFMATMPRARHIVETATVRL--R 125
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
S ++ L VP HRL R TSG+LL K K + + FA+K
Sbjct: 126 RSTGNNEL-------VPAHRLDRLTSGLLLFTKHKDVRGAYQSLFAEK 166
>gi|391231624|ref|ZP_10267830.1| pseudouridine synthase, RluA family [Opitutaceae bacterium TAV1]
gi|391221285|gb|EIP99705.1| pseudouridine synthase, RluA family [Opitutaceae bacterium TAV1]
Length = 341
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS-------LS 87
D+P L++ YED+ L+A+NKPSG+ V PG + T++ L +++++
Sbjct: 97 DIP--LDILYEDEHLLAVNKPSGMVVHPGSGTGEDTLVHALLGHCARRATEGGGGGLSGV 154
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P VHRL R T+G+++ AKT A +A FA +
Sbjct: 155 GGVERPGIVHRLDRETTGVIVVAKTDAAHRGLAEQFAGR 193
>gi|426405639|ref|YP_007024610.1| pseudouridylate synthase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862307|gb|AFY03343.1| pseudouridylate synthase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 335
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 22 SELVYHRLPWKEPDV--PY--LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
++L+ +LP EP P+ L+V +ED+DLI +NKP+GL V P T++ L
Sbjct: 63 NDLIEIQLPEPEPSELQPFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIS 122
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
S + P VHRL + TSGI++ AK A + A F ++++
Sbjct: 123 HTDDLSMKFGEE--RPGIVHRLDKETSGIIVVAKNDKAHESLTAQFKERST 171
>gi|398355003|ref|YP_006400467.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii USDA 257]
gi|390130329|gb|AFL53710.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii USDA 257]
Length = 342
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L+V YEDDDLI L KP+GL V PG T++ L S +
Sbjct: 84 KGEDIP--LDVLYEDDDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VR 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A ++ FAD
Sbjct: 141 RPGIVHRLDKETSGVMVVAKNDTAHRHLSDQFAD 174
>gi|376258094|ref|YP_005145985.1| hypothetical protein CDVA01_2081 [Corynebacterium diphtheriae VA01]
gi|372120611|gb|AEX84345.1| hypothetical protein CDVA01_2081 [Corynebacterium diphtheriae VA01]
Length = 349
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
++ ++R+P EP +PY V YEDD ++ +KP L +P G + T +Q R S
Sbjct: 108 NDDVWFYRIPAPEPTIPYSCTVIYEDDTILVADKPPFLATMPRG--KHITNSATVQLRRS 165
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 166 TGIDELS-------PAHRLDRLTSGLLLFTKHKRVRGAYQTLFSER 204
>gi|376243847|ref|YP_005134699.1| hypothetical protein CDCE8392_2168 [Corynebacterium diphtheriae
CDCE 8392]
gi|376285782|ref|YP_005158992.1| hypothetical protein CD31A_2300 [Corynebacterium diphtheriae 31A]
gi|376288777|ref|YP_005161343.1| hypothetical protein CDBH8_2263 [Corynebacterium diphtheriae BH8]
gi|371579297|gb|AEX42965.1| hypothetical protein CD31A_2300 [Corynebacterium diphtheriae 31A]
gi|371586111|gb|AEX49776.1| hypothetical protein CDBH8_2263 [Corynebacterium diphtheriae BH8]
gi|372107089|gb|AEX73151.1| hypothetical protein CDCE8392_2168 [Corynebacterium diphtheriae
CDCE 8392]
Length = 349
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
++ ++R+P EP +PY V YEDD ++ +KP L +P G + T +Q R S
Sbjct: 108 NDDVWFYRIPAPEPTIPYSCTVIYEDDTILVADKPPFLATMPRG--KHITNSATVQLRRS 165
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 166 TGIDELS-------PAHRLDRLTSGLLLFTKHKRVRGAYQTLFSER 204
>gi|346992351|ref|ZP_08860423.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp.
TW15]
Length = 344
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LEV YEDDDLI +NKP+G+ V P T++ L + S + P
Sbjct: 82 DIP--LEVVYEDDDLIVINKPAGMVVHPAPGSPNGTLVNALLHHCGEDLSGVGG-VKRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
VHR+ + TSG+L+ AK+ A +AA F
Sbjct: 139 IVHRIDKETSGLLVVAKSDAAHHGLAAQF 167
>gi|456865891|gb|EMF84195.1| RNA pseudouridine synthase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 385
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G+ +VY + KEP V ++ YED+ +A+NKP L V P G ++
Sbjct: 59 SGKKVKSGILLREGNSVVYQPVGRKEPPVRRDYKILYEDEFFVAVNKPGDLPVHPAGKYR 118
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 119 KGNLLTLLKE---------SGKFENLFTVHRLDRETSGVVLFAKDSKTASLLSGFFS 166
>gi|418961352|ref|ZP_13513239.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
gi|380345019|gb|EIA33365.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
Length = 298
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + + S
Sbjct: 67 KLSLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHS---PLSTI 121
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ P VHR+ + TSG+L+ AK +A +A DKT+
Sbjct: 122 NGTYRPGIVHRIDKDTSGLLMVAKNDMAHQSLAKQLKDKTN 162
>gi|417788320|ref|ZP_12436003.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius NIAS840]
gi|334308497|gb|EGL99483.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius NIAS840]
Length = 298
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + + S
Sbjct: 67 KLSLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHS---PLSTI 121
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ P VHR+ + TSG+L+ AK +A +A DKT+
Sbjct: 122 NGTYRPGIVHRIDKDTSGLLMVAKNDMAHQSLAKQLKDKTN 162
>gi|301301197|ref|ZP_07207353.1| pseudouridine synthase, RluA family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851196|gb|EFK78924.1| pseudouridine synthase, RluA family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 298
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + + S
Sbjct: 67 KLSLEPENIP--LDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHS---PLSTI 121
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ P VHR+ + TSG+L+ AK +A +A DKT+
Sbjct: 122 NGTYRPGIVHRIDKDTSGLLMVAKNDMAHQSLAKQLKDKTN 162
>gi|116511823|ref|YP_809039.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris SK11]
gi|116107477|gb|ABJ72617.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris SK11]
Length = 301
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LE+ YED D+ +NKP G+ V P T++ + + K SS++ P
Sbjct: 74 DLP--LEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMYHI-KDLSSING-VIRPG 129
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +AA DKTS
Sbjct: 130 IVHRIDKDTSGLLMIAKNDKAHESLAAQLKDKTS 163
>gi|374600163|ref|ZP_09673165.1| pseudouridine synthase [Myroides odoratus DSM 2801]
gi|423325327|ref|ZP_17303168.1| RluA family pseudouridine synthase [Myroides odoratimimus CIP
103059]
gi|373911633|gb|EHQ43482.1| pseudouridine synthase [Myroides odoratus DSM 2801]
gi|404606609|gb|EKB06149.1| RluA family pseudouridine synthase [Myroides odoratimimus CIP
103059]
Length = 560
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 34 PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHP 93
P++ +E+ YED+D +NKP +PG ++ Q +V ++++ R K A+ P
Sbjct: 351 PELQRPIEIVYEDEDFAIVNKPEEFLSVPG-IYIQDSVYERMKIRYPK--------ATGP 401
Query: 94 VPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ VHRL TSGIL+ AK K A + + F KT
Sbjct: 402 IIVHRLDMATSGILIIAKNKEAHKALQSQFIKKT 435
>gi|357024379|ref|ZP_09086532.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
gi|355543733|gb|EHH12856.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
Length = 341
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 20 AGSELVYHRLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
A ++V +P EP P L++ YED +LI ++KP+GL V PG T++ L
Sbjct: 66 AAGDVVSVVMPEPEPATPQGEAIALDILYEDAELIVIDKPAGLVVHPGAGNWTGTLVNAL 125
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
S + P VHRL + TSG+++ AKT A ++ FAD D
Sbjct: 126 IHHCGDSLSGIGG-VKRPGIVHRLDKETSGVMVVAKTDRAHKALSEAFADHGRTGD 180
>gi|376294239|ref|YP_005165913.1| hypothetical protein CDHC02_2135 [Corynebacterium diphtheriae HC02]
gi|372111562|gb|AEX77622.1| hypothetical protein CDHC02_2135 [Corynebacterium diphtheriae HC02]
Length = 349
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
++ ++R+P EP +PY V YEDD ++ +KP L +P G + T +Q R S
Sbjct: 108 NDDVWFYRIPAPEPTIPYSCTVVYEDDTILVADKPPFLATMPRG--KHITNSATVQLRRS 165
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 166 TGIDELS-------PAHRLDRLTSGLLLFTKRKRVRGAYQTLFSER 204
>gi|219128013|ref|XP_002184218.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404449|gb|EEC44396.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 325
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
S P + SE++ LP L++ +ED+ +I +NK + + V P TV+
Sbjct: 56 SLPREEGASEIIAQDLP---------LDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVN 106
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L + + +S S+S + P VHRL +GT+G+L+ AKT ++ +FA +
Sbjct: 107 ALAYYLANRSESISFR---PGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAAR 156
>gi|93005955|ref|YP_580392.1| pseudouridine synthase RluD [Psychrobacter cryohalolentis K5]
gi|92393633|gb|ABE74908.1| ribosomal large subunit pseudouridine synthase D [Psychrobacter
cryohalolentis K5]
Length = 396
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP---- 95
++V YEDDD++ +NKP G+ V PG Q T++ L + +Q H +P
Sbjct: 157 IDVVYEDDDVLVINKPVGMVVHPGAGNQTGTLVNALLYHYPQQ---------HHLPRAGL 207
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+LL KTK A+ + DK+
Sbjct: 208 VHRIDKDTSGLLLIGKTKPAQLALMEQLKDKS 239
>gi|298375940|ref|ZP_06985896.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
3_1_19]
gi|298266977|gb|EFI08634.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
3_1_19]
Length = 545
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP G+ +PG +V ++L S L +A+ P+ VHRL
Sbjct: 339 LDILYEDDYLLVINKPEGMLSVPGK-GDADSVYQRL--------SILYPEATGPIIVHRL 389
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK A + A F ++T
Sbjct: 390 DMATSGLLLAAKTKEAHQNLQAQFKNRT 417
>gi|125624328|ref|YP_001032811.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris MG1363]
gi|389854689|ref|YP_006356933.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris NZ9000]
gi|124493136|emb|CAL98100.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris MG1363]
gi|300071111|gb|ADJ60511.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris NZ9000]
Length = 301
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LE+ YED D+ +NKP G+ V P T++ + + K SS++ P
Sbjct: 74 DLP--LEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMYHI-KDLSSING-VIRPG 129
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +AA DKTS
Sbjct: 130 IVHRIDKDTSGLLMIAKNDKAHESLAAQLKDKTS 163
>gi|306831623|ref|ZP_07464781.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978527|ref|YP_004288243.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|304426408|gb|EFM29522.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178455|emb|CBZ48499.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 298
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YEDDD+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYTAENIP--LDIIYEDDDVAVVNKPQGMVVHPSVGHTSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VIRPGIVHRIDKDTSGLLMIAKNDKAHNALAAELKDKKSL 161
>gi|86135056|ref|ZP_01053638.1| ribosomal large subunit pseudouridine synthase A [Polaribacter sp.
MED152]
gi|85821919|gb|EAQ43066.1| ribosomal large subunit pseudouridine synthase A [Polaribacter sp.
MED152]
Length = 558
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 10 KHKNSAP-LQGAGSELVYHRLPWKEPDVPYLL---------EVFYEDDDLIALNKPSGLQ 59
KHKN P Q ++ H L E D LL E+ +EDDDLI +NKP+
Sbjct: 315 KHKNYYPACQSRCKPILGHMLQNIEMDSNSLLTNLSSEKNLEIIFEDDDLIVVNKPAEFL 374
Query: 60 VLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
+PG +T+ + R Q + A+ P+ VHRL TSGIL+ KTK A +
Sbjct: 375 SVPG-----KTIKDSMYTRIKNQYPN----ATGPLIVHRLDMSTSGILVLTKTKEANKIV 425
Query: 120 AAYFADKT 127
+ F ++T
Sbjct: 426 QSQFINRT 433
>gi|409123707|ref|ZP_11223102.1| RNA pseudouridylate synthase [Gillisia sp. CBA3202]
Length = 284
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV +EDD L +NKP+G G F +T+ + L + + S+L +P+PVHRL
Sbjct: 80 LEVIFEDDHLAVINKPAGYPT-SGNYF--KTIEQALPFNL--EPSTLPDALPYPIPVHRL 134
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
TSG+L+ AKTK A+ + F DK
Sbjct: 135 DNPTSGLLIVAKTKSAQLKLHQDFEDK 161
>gi|376249548|ref|YP_005141492.1| hypothetical protein CDHC04_2185 [Corynebacterium diphtheriae HC04]
gi|372116116|gb|AEX82174.1| hypothetical protein CDHC04_2185 [Corynebacterium diphtheriae HC04]
Length = 349
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P EP +PY V YEDD ++ +KP L +P G + T +Q R S
Sbjct: 113 FYRIPAPEPTIPYSCTVVYEDDTILVADKPPFLATMPRG--KHITNSATVQLRRSTGIDE 170
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 171 LS-------PAHRLDRLTSGLLLFTKHKRVRGAYQTLFSER 204
>gi|262405165|ref|ZP_06081715.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294643535|ref|ZP_06721341.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CC 2a]
gi|294807042|ref|ZP_06765861.1| pseudouridine synthase, RluA family [Bacteroides xylanisolvens SD
CC 1b]
gi|298482426|ref|ZP_07000612.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
D22]
gi|336406499|ref|ZP_08587150.1| hypothetical protein HMPREF0127_04463 [Bacteroides sp. 1_1_30]
gi|345508128|ref|ZP_08787765.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
D1]
gi|423215109|ref|ZP_17201637.1| RluA family pseudouridine synthase [Bacteroides xylanisolvens
CL03T12C04]
gi|229444633|gb|EEO50424.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
D1]
gi|262356040|gb|EEZ05130.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292641110|gb|EFF59322.1| pseudouridine synthase, RluA family [Bacteroides ovatus SD CC 2a]
gi|294445741|gb|EFG14389.1| pseudouridine synthase, RluA family [Bacteroides xylanisolvens SD
CC 1b]
gi|295088097|emb|CBK69620.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
xylanisolvens XB1A]
gi|298271405|gb|EFI12980.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
D22]
gi|335934401|gb|EGM96397.1| hypothetical protein HMPREF0127_04463 [Bacteroides sp. 1_1_30]
gi|392692372|gb|EIY85610.1| RluA family pseudouridine synthase [Bacteroides xylanisolvens
CL03T12C04]
Length = 357
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED ++ +NKP+GL V PG T++ L W K + H
Sbjct: 104 DIP--LTIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHM-KDIPDYDANDPHVG 160
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTT 194
>gi|222149596|ref|YP_002550553.1| ribosomal large subunit pseudouridine synthase RluD subfamily
[Agrobacterium vitis S4]
gi|221736578|gb|ACM37541.1| ribosomal large subunit pseudouridine synthase RluD subfamily
[Agrobacterium vitis S4]
Length = 342
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L V YED DLI L+KP+GL V PG T++ L S +
Sbjct: 84 KGEDIP--LTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VK 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK +A +A FAD
Sbjct: 141 RPGIVHRLDKETSGVMVVAKNDIAHRHLADQFAD 174
>gi|149202314|ref|ZP_01879287.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149144412|gb|EDM32443.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 342
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV YEDDDLI +NKP+G+ V P + T++ L S + A P VHR+
Sbjct: 85 LEVVYEDDDLIVVNKPAGMVVHPAPGSPEGTLVNALLHHCGDSLSGVGG-AKRPGIVHRI 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYF 123
+ TSG+L+ AK+ A +AA F
Sbjct: 144 DKETSGLLVVAKSDAAHQGLAAQF 167
>gi|241206033|ref|YP_002977129.1| RluA family pseudouridine synthase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859923|gb|ACS57590.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 341
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDDD+I ++KPSGL V PG T++ L S S + P
Sbjct: 87 DIP--LDILHEDDDVIVISKPSGLVVHPGAGNWTGTLVNALIHHCSNTLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|218528997|ref|YP_002419813.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218521300|gb|ACK81885.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
CM4]
Length = 343
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V +ED+DLI ++KP+GL V P + T++ +L S + P VHRL
Sbjct: 99 LAVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGASLSGIGG-VRRPGIVHRL 157
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA ++A FAD
Sbjct: 158 DKDTSGLLVVAKNDLAHQGLSAQFAD 183
>gi|440227628|ref|YP_007334719.1| ribosomal large subunit pseudouridine synthase D [Rhizobium tropici
CIAT 899]
gi|440039139|gb|AGB72173.1| ribosomal large subunit pseudouridine synthase D [Rhizobium tropici
CIAT 899]
Length = 341
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YEDDD+I ++KP+GL V PG T++ L S + P
Sbjct: 87 DIP--LDVLYEDDDVIVISKPAGLVVHPGAGNWSGTLVNALIHHCGNSLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDVAHRHLSLQFAD 174
>gi|383790847|ref|YP_005475421.1| RluA family pseudouridine synthase [Spirochaeta africana DSM 8902]
gi|383107381|gb|AFG37714.1| pseudouridine synthase, RluA family [Spirochaeta africana DSM 8902]
Length = 350
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 1 LTLIEFYSTKHKNSAPLQGAGSELVYHRLPWKEPDV---PYLLEVFYEDDDLIALNKPSG 57
L IE K SA + AG + P +PD P E+ YEDDD++ +NKP G
Sbjct: 40 LRRIELNGNPAKLSAQVS-AGDRVSGVVEPPVQPDCIPEPLRAEILYEDDDVVVVNKPPG 98
Query: 58 LQVLPGGLFQQRTVLK---------QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILL 108
+ V P T+L Q +++ + + S A P VHRL + TSG+L+
Sbjct: 99 MVVHPAHGNPDHTLLNGLLGHVSGLQERFQQAGDGYAAESAAVRPGIVHRLDKDTSGVLI 158
Query: 109 CAKTKLAKTCIAAYFADK 126
AK A ++ FAD+
Sbjct: 159 AAKHPAAHALLSQQFADR 176
>gi|163850438|ref|YP_001638481.1| RluA family pseudouridine synthase [Methylobacterium extorquens
PA1]
gi|163662043|gb|ABY29410.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
PA1]
Length = 343
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V +ED+DLI ++KP+GL V P + T++ +L S + P VHRL
Sbjct: 99 LAVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGASLSGIGG-VRRPGIVHRL 157
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA ++A FAD
Sbjct: 158 DKDTSGLLVVAKNDLAHQGLSAQFAD 183
>gi|67459733|ref|YP_247357.1| ribosomal large subunit pseudouridine synthase D [Rickettsia felis
URRWXCal2]
gi|67005266|gb|AAY62192.1| Ribosomal large subunit pseudouridine synthases, RluD subfamily
[Rickettsia felis URRWXCal2]
Length = 385
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 31 WKEPD------VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
+KEP+ L++ YEDDDLI +NK +G+ V PG T++ L + +K S
Sbjct: 106 FKEPEELKIAAANIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYH-TKNLS 164
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+ S A P VHRL + T+G+++ AK A +A
Sbjct: 165 DIGS-AERPGIVHRLDKDTTGLMVVAKNNKAHMLLA 199
>gi|349699559|ref|ZP_08901188.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Gluconacetobacter europaeus LMG 18494]
Length = 323
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 12 KNSAPLQG------AGSELVYHRLPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVL 61
+N APL+ AG H +P P P L++ YED DLI L+KP+G+ V
Sbjct: 48 RNGAPLRDPAEPVRAGMCYEIH-IPPAIPTTPQGQDIALDILYEDRDLIVLDKPAGMVVH 106
Query: 62 PGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
P + T++ L + + + + P VHRL + TSGI++ AKT++A ++
Sbjct: 107 PAPGNEDGTLVNALLAHCGEGLTGIGGE-RRPGIVHRLDKDTSGIMVAAKTEMAHQALSL 165
Query: 122 YFADK 126
FA++
Sbjct: 166 AFAER 170
>gi|422871013|ref|ZP_16917506.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1087]
gi|328946167|gb|EGG40312.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1087]
Length = 298
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 22 SELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
+++Y+ LP E D+P LE+ Y+D+D+ +NKP G+ V P T++ L
Sbjct: 54 GDIIYYELPEPEVVEYVAEDIP--LEIVYQDEDVAVINKPQGMVVHPSAGHTSGTLVNAL 111
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ Q S + P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 112 MYHI--QDLSGINGVLRPGIVHRIDKDTSGLLMIAKNDQAHVALADELKDKKSL 163
>gi|345881439|ref|ZP_08832959.1| hypothetical protein HMPREF9431_01623 [Prevotella oulorum F0390]
gi|343919678|gb|EGV30422.1| hypothetical protein HMPREF9431_01623 [Prevotella oulorum F0390]
Length = 355
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDL+ +NK +G+ V PG T++ + W K ++ +
Sbjct: 97 DIP--LDIVYEDDDLMVVNKKAGMVVHPGAGNFTGTLINAVAWHL-KDLATFDANDPDVG 153
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+++ AKT AK+ + F +KT+
Sbjct: 154 LVHRIDKDTSGLIVVAKTADAKSKLGKQFFNKTT 187
>gi|262383706|ref|ZP_06076842.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_33B]
gi|262294604|gb|EEY82536.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_33B]
Length = 549
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP G+ +PG +V ++L S L +A+ P+ VHRL
Sbjct: 340 LDILYEDDYLLVINKPEGMLSVPGK-GDADSVYQRL--------SILYPEATGPIIVHRL 390
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK A + A F ++T
Sbjct: 391 DMATSGLLLAAKTKEAHQNLQAQFKNRT 418
>gi|237719675|ref|ZP_04550156.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_2_4]
gi|229450944|gb|EEO56735.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_2_4]
Length = 357
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED L+ +NKP+GL V PG T++ L W K + H VHR+
Sbjct: 107 LTIVYEDPYLMVVNKPAGLVVHPGHGNYHGTLVNALAWHM-KDIPDYDANDPHVGLVHRI 165
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + F +KT+
Sbjct: 166 DKDTSGLLVIAKTPDAKTNLGLQFFNKTT 194
>gi|126139263|ref|XP_001386154.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
gi|126093436|gb|ABN68125.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054]
Length = 585
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+L+ HR KEP V +++ YEDDDLIA++KPSG+ V P G ++ T+ K Q K
Sbjct: 149 DLISHRTYRKEPPVSSREIKIVYEDDDLIAIDKPSGIPVHPTGRYRYNTITKIFQHEMGK 208
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKT 112
H P +RL R TSG++ KT
Sbjct: 209 --------VVH--PCNRLDRLTSGLMFLGKT 229
>gi|380693484|ref|ZP_09858343.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
faecis MAJ27]
Length = 357
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED ++ +NKP+GL V PG T++ L W K + H VHR+
Sbjct: 107 LNIVYEDQYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHM-KDIPEYDANDPHVGLVHRI 165
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + F +KT+
Sbjct: 166 DKDTSGLLVIAKTPDAKTHLGIQFFNKTT 194
>gi|417857857|ref|ZP_12502914.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens F2]
gi|338823861|gb|EGP57828.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens F2]
Length = 340
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L+V YED+DLI L KP+GL V PG T++ L S +
Sbjct: 84 KGEDIP--LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VK 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A +AA FAD
Sbjct: 141 RPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFAD 174
>gi|375294074|ref|YP_005128614.1| hypothetical protein CDB402_2123 [Corynebacterium diphtheriae INCA
402]
gi|371583746|gb|AEX47412.1| hypothetical protein CDB402_2123 [Corynebacterium diphtheriae INCA
402]
Length = 349
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
++ ++R+P EP +PY V YEDD ++ +KP L +P G + T +Q R S
Sbjct: 108 NDDVWFYRIPAPEPTIPYSCTVVYEDDTILVADKPPFLATMPRG--KHITNSATVQLRRS 165
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 166 TGIDELS-------PAHRLDRLTSGLLLFTKHKRVRGAYQTLFSER 204
>gi|154496189|ref|ZP_02034885.1| hypothetical protein BACCAP_00473 [Bacteroides capillosus ATCC
29799]
gi|150274744|gb|EDN01808.1| pseudouridine synthase, RluA family [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 304
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YED D+I +NKP G+ V P T++ L + K S ++ + P
Sbjct: 75 DIP--LDVVYEDGDVIVINKPVGMVVHPAAGHPDGTLVNALLYHCGKSLSGINGELR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ R TSG+++ AK+ A +A D +
Sbjct: 132 IVHRIDRDTSGLIIAAKSDFAHLALAEQLQDHS 164
>gi|347525390|ref|YP_004832138.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
ruminis ATCC 27782]
gi|345284349|gb|AEN78202.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
ruminis ATCC 27782]
Length = 301
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + S +
Sbjct: 67 LELRPENIP--LDIVYEDDDVIVINKPQGMVVHPAPGHDEHTLVNALLYHC---PLSTIN 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +A DKT++
Sbjct: 122 GTFRPGIVHRIDKDTSGLLMVAKNDKAHRSLAKQLKDKTNI 162
>gi|111114840|ref|YP_709458.1| hypothetical protein BAPKO_0017 [Borrelia afzelii PKo]
gi|216263838|ref|ZP_03435832.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia afzelii ACA-1]
gi|384206521|ref|YP_005592242.1| RluA family pseudouridine synthase [Borrelia afzelii PKo]
gi|110890114|gb|ABH01282.1| conserved hypothetical protein [Borrelia afzelii PKo]
gi|215979882|gb|EEC20704.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia afzelii ACA-1]
gi|342856404|gb|AEL69252.1| pseudouridine synthase, RluA family protein [Borrelia afzelii PKo]
Length = 326
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+++ YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IDIIYEDSNIIVLNKPQGILSHPGISHWDNTVVNFLLYHIKGLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F D+ +
Sbjct: 144 DKDTSGVLICAKNISTVRFLAQQFKDRRT 172
>gi|418297020|ref|ZP_12908862.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens CCNWGS0286]
gi|355538118|gb|EHH07365.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens CCNWGS0286]
Length = 340
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L+V YED+DLI L KP+GL V PG T++ L S +
Sbjct: 84 KGEDIP--LDVEYEDEDLIVLIKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VK 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A +AA FAD
Sbjct: 141 RPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFAD 174
>gi|323339837|ref|ZP_08080106.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|417974093|ref|ZP_12614917.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|323092710|gb|EFZ35313.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|346329548|gb|EGX97843.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
Length = 301
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + S +
Sbjct: 67 LELRPENIP--LDIVYEDDDVIVINKPQGMVVHPAPGHDEHTLVNALLYHC---PLSTIN 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +A DKT++
Sbjct: 122 GTFRPGIVHRIDKDTSGLLMVAKNDKAHRSLAKQLKDKTNI 162
>gi|224369746|ref|YP_002603910.1| protein RluD2 [Desulfobacterium autotrophicum HRM2]
gi|223692463|gb|ACN15746.1| RluD2 [Desulfobacterium autotrophicum HRM2]
Length = 298
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 3 LIEFYSTKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLP 62
+I+ T S+PL GS+++Y+R EP +P+ E+ + +D LIA KP L V+P
Sbjct: 48 VIQEDKTPFNISSPLI-PGSKVLYYREVETEPLIPFKEEILFHNDHLIAACKPHFLPVVP 106
Query: 63 GGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122
G T+L +L+ R S VP+HRL R T+G++L + +
Sbjct: 107 SGPHVNETLLNRLKIRFSNPDI---------VPIHRLDRETAGVVLFSVEPETRGAFQHL 157
Query: 123 FADK 126
F +K
Sbjct: 158 FMEK 161
>gi|403530188|ref|YP_006664717.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
gi|403232260|gb|AFR26003.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
Length = 334
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD +I +NK +GL V PG T++ L + S + P VHRL
Sbjct: 81 LDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNALIYHCGDSLSGIGG-VKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ T+GI++ AK LA ++A F+D +TS +D
Sbjct: 140 DKNTTGIMVVAKNDLAHKNLSAQFSDHGRTSALD 173
>gi|150008790|ref|YP_001303533.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
distasonis ATCC 8503]
gi|149937214|gb|ABR43911.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
distasonis ATCC 8503]
Length = 549
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP G+ +PG +V ++L S L +A+ P+ VHRL
Sbjct: 340 LDILYEDDYLLVINKPEGMLSVPGK-GDADSVYQRL--------SILYPEATGPIIVHRL 390
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK A + A F ++T
Sbjct: 391 DMATSGLLLAAKTKEAHQNLQAQFKNRT 418
>gi|326800939|ref|YP_004318758.1| pseudouridine synthase [Sphingobacterium sp. 21]
gi|326551703|gb|ADZ80088.1| pseudouridine synthase, RluA family [Sphingobacterium sp. 21]
Length = 348
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDL+ +NKP+G+ V PG T++ L + + Q L P VHR+
Sbjct: 99 LDIRYEDDDLLIVNKPAGMVVHPGYNNYTGTLVNALVYHFN-QLPQLPGNDGRPGLVHRI 157
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK + T +A F D T
Sbjct: 158 DKDTSGLLVIAKNEWTITNLAKQFFDHT 185
>gi|227878615|ref|ZP_03996537.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256843219|ref|ZP_05548707.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256850423|ref|ZP_05555851.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|293380626|ref|ZP_06626679.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295692991|ref|YP_003601601.1| pseudouridine synthase [Lactobacillus crispatus ST1]
gi|312977447|ref|ZP_07789195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|423318686|ref|ZP_17296563.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
gi|227861792|gb|EEJ69389.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256614639|gb|EEU19840.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256712820|gb|EEU27813.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|290922813|gb|EFD99762.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295031097|emb|CBL50576.1| Pseudouridine synthase [Lactobacillus crispatus ST1]
gi|310895878|gb|EFQ44944.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|405593417|gb|EKB66865.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
Length = 303
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + ++ + S + P VHR+
Sbjct: 79 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--KALAQSPEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT A+ + A KT+
Sbjct: 137 DKDTSGLLMIAKTAKARESLEDQLAHKTN 165
>gi|406981013|gb|EKE02539.1| Pseudouridine synthase [uncultured bacterium]
Length = 310
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L K ++P L++ YED+++I +NKP+G+ P + ++ T++ L + S ++
Sbjct: 76 LELKPENIP--LDIRYEDENIIIVNKPTGMLTHPTAIEREHTLVNALLYHCDGNLSGING 133
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHRL R TSG+L+ AK A ++ +KT+
Sbjct: 134 -VMRPGIVHRLDRDTSGLLMVAKNDYAHQFLSEQIKNKTA 172
>gi|423321680|ref|ZP_17299551.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
gi|405591797|gb|EKB65265.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
Length = 303
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + ++ + S + P VHR+
Sbjct: 79 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--KALAQSPEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT A+ + A KT+
Sbjct: 137 DKDTSGLLMIAKTAKARESLEDQLAHKTN 165
>gi|381182085|ref|ZP_09890907.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Listeriaceae bacterium TTU M1-001]
gi|380318001|gb|EIA21298.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Listeriaceae bacterium TTU M1-001]
Length = 306
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+++YED D++ +NKP G+ V P T++ L + Q S + P
Sbjct: 76 DIP--LDIYYEDKDVLVVNKPQGMVVHPAAGHMSGTLVNALLYHC--QDLSGINGVIRPG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +++ DKTS
Sbjct: 132 IVHRIDKDTSGLLMVAKNDAAHVSLSSQLKDKTS 165
>gi|418939767|ref|ZP_13493154.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
gi|375053486|gb|EHS49878.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
Length = 341
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YED DLI + KP GL V PG T++ L + S + P VHRL
Sbjct: 90 LDVLYEDADLIVIAKPPGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGG-VKRPGIVHRL 148
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+++ AK LA +A FAD
Sbjct: 149 DKDTSGVMVVAKNDLAHRHLADQFAD 174
>gi|340347427|ref|ZP_08670536.1| ribosomal large subunit pseudouridine synthase D [Prevotella
dentalis DSM 3688]
gi|433651191|ref|YP_007277570.1| pseudouridine synthase, RluA family [Prevotella dentalis DSM 3688]
gi|339609519|gb|EGQ14391.1| ribosomal large subunit pseudouridine synthase D [Prevotella
dentalis DSM 3688]
gi|433301724|gb|AGB27540.1| pseudouridine synthase, RluA family [Prevotella dentalis DSM 3688]
Length = 367
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YEDDDL+ +NK +G+ V PG T++ + W + S VHR+
Sbjct: 112 LRVVYEDDDLMVVNKEAGMVVHPGAGNFSGTLINAVAWHL-RHLESFDPNDPEVGLVHRI 170
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + F +KT+
Sbjct: 171 DKDTSGLLVVAKTPEAKTGLGRQFFEKTT 199
>gi|335996600|ref|ZP_08562517.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis SPM0211]
gi|335351670|gb|EGM53161.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis SPM0211]
Length = 301
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YEDDD+I +NKP G+ V P + T++ L + S +
Sbjct: 67 LELRPENIP--LDIVYEDDDVIVINKPQGMVVHPAPGHDEHTLVNALLYHC---PLSTIN 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +A DKT++
Sbjct: 122 GTFRPGIVHRIDKDTSGLLMVAKNDKAHRSLAKQLKDKTNI 162
>gi|188580214|ref|YP_001923659.1| RluA family pseudouridine synthase [Methylobacterium populi BJ001]
gi|179343712|gb|ACB79124.1| pseudouridine synthase, RluA family [Methylobacterium populi BJ001]
Length = 345
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V +ED+DLI ++KP+GL V P + T++ +L S + P VHRL
Sbjct: 101 LAVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGASLSGIGG-VRRPGIVHRL 159
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA ++A FAD
Sbjct: 160 DKDTSGLLVVAKNDLAHQGLSAQFAD 185
>gi|403514918|ref|YP_006655738.1| pseudouridine synthase [Lactobacillus helveticus R0052]
gi|403080356|gb|AFR21934.1| Pseudouridine synthase [Lactobacillus helveticus R0052]
Length = 303
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP G+ V P T++ L + Q + SS+ P VHR+
Sbjct: 79 LDIVYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNTLLYHT--QDLAQSSEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A KT+
Sbjct: 137 DKDTSGLLMIAKNAKARESLEDQLAHKTN 165
>gi|116253506|ref|YP_769344.1| ribosomal large subunit pseudouridine synthase D [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258154|emb|CAK09255.1| putative ribosomal large subunit pseudouridine synthase D
[Rhizobium leguminosarum bv. viciae 3841]
Length = 341
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDDD+I ++KPSGL V PG T++ L S S + P
Sbjct: 87 DIP--LDILHEDDDVIVISKPSGLVVHPGAGNWTGTLVNALIHHCSDTLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|325954148|ref|YP_004237808.1| pseudouridine synthase [Weeksella virosa DSM 16922]
gi|323436766|gb|ADX67230.1| pseudouridine synthase, RluA family [Weeksella virosa DSM 16922]
Length = 362
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + +EDD ++ ++KP+G+ V PG T++ L++ S+S++ P
Sbjct: 94 DLP--LNIVFEDDQVLVIDKPAGMVVHPGHGNYSGTLVNALKFHFDN-LPSMSAELERPG 150
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AKT+ A +A FA+ T+
Sbjct: 151 LVHRIDKDTSGLLVIAKTEQAMNHLALQFANHTTT 185
>gi|424872040|ref|ZP_18295702.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167741|gb|EJC67788.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 341
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDDD+I ++KPSGL V PG T++ L S S + P
Sbjct: 87 DIP--LDILHEDDDVIVISKPSGLVVHPGAGNWTGTLVNALIHHCSDTLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|172057958|ref|YP_001814418.1| RluA family pseudouridine synthase [Exiguobacterium sibiricum
255-15]
gi|171990479|gb|ACB61401.1| pseudouridine synthase, RluA family [Exiguobacterium sibiricum
255-15]
Length = 307
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 20 AGSELVYHRLPWK------EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+G+E + R+P D+P L+V YED D+I +NKP G+ V P T++
Sbjct: 56 SGTEEILVRIPEAVELEVLPEDIP--LDVVYEDSDVIVINKPKGMVVHPAAGHVSGTLVN 113
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L Q S + P VHR+ + TSG+L+ AK LA +A DKT+
Sbjct: 114 ALLHHC--QDLSGINGVKRPGIVHRIDKDTSGLLMVAKNDLAHESLAQQLKDKTT 166
>gi|315924170|ref|ZP_07920396.1| ribosomal large subunit pseudouridine synthase D [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622572|gb|EFV02527.1| ribosomal large subunit pseudouridine synthase D [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 307
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED D+I +NKPSG+ V P Q T++ L A + S + + P VHR+
Sbjct: 80 LDIVYEDGDVIVVNKPSGMVVHPASGTQSGTLVNALM--AHTKDLSGINGVNRPGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSGIL+ AK LA +A A+ + V
Sbjct: 138 DKDTSGILVVAKNDLAHRHLARQLAEHSMV 167
>gi|302879313|ref|YP_003847877.1| RluA family pseudouridine synthase [Gallionella capsiferriformans
ES-2]
gi|302582102|gb|ADL56113.1| pseudouridine synthase, RluA family [Gallionella capsiferriformans
ES-2]
Length = 326
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Query: 30 PWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL--QWRASKQSSSLS 87
P++ D+P L++ YEDDDL+ +NKP GL V PG Q T+L L W +L
Sbjct: 83 PYQAEDIP--LDIVYEDDDLLVINKPVGLVVHPGSGNWQGTLLNALLHHW----PELALV 136
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+A VHRL + TSG+L+ AKT +++T + +++
Sbjct: 137 PRAG---IVHRLDKDTSGLLVVAKTLISQTNLVRQLQERS 173
>gi|239622355|ref|ZP_04665386.1| pseudouridine synthase [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|239514352|gb|EEQ54219.1| pseudouridine synthase [Bifidobacterium longum subsp. infantis CCUG
52486]
Length = 261
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
HR EP +P+ ++V YED+ +I ++KP L +P G++ ++T L +L+ R + +
Sbjct: 5 HRYVIDEPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDIT- 63
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P HRL R T+G+L+ + + F ++ +V
Sbjct: 64 --------PAHRLDRMTAGVLVFVRDSACRGAYQMLFQNRQAV 98
>gi|349686560|ref|ZP_08897702.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Gluconacetobacter oboediens 174Bp2]
Length = 323
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED DLI L+KP+G+ V P + T++ L + + + + P VHRL
Sbjct: 85 LDILYEDRDLIVLDKPAGMVVHPAPGNEDGTLVNALLAHCGEGLTGIGGE-RRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSGI++ AKT++A ++ FA++
Sbjct: 144 DKDTSGIMVAAKTEMAHQALSLAFAER 170
>gi|407787124|ref|ZP_11134266.1| ribosomal large subunit pseudouridine synthase D [Celeribacter
baekdonensis B30]
gi|407199950|gb|EKE69962.1| ribosomal large subunit pseudouridine synthase D [Celeribacter
baekdonensis B30]
Length = 339
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV YEDDDLI +NKP G+ V P T++ L + S + + P VHR+
Sbjct: 85 LEVIYEDDDLIVINKPVGMVVHPAPGSPSGTLVNALMYHFGDNLSGIGGE-KRPGIVHRI 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK+ A +A F T
Sbjct: 144 DKDTSGLLVVAKSDKAHQGLAKQFEKHT 171
>gi|385838116|ref|YP_005875746.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris A76]
gi|358749344|gb|AEU40323.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris A76]
Length = 301
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YED D+ +NKP G+ V P T++ + + K SS++ P VHR+
Sbjct: 77 LEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMYHI-KDLSSING-VIRPGIVHRI 134
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A +AA DKTS
Sbjct: 135 DKDTSGLLMIAKNDKAHESLAAQLKDKTS 163
>gi|340622695|ref|YP_004741147.1| RNA pseudouridylate synthase [Capnocytophaga canimorsus Cc5]
gi|339902961|gb|AEK24040.1| RNA pseudouridylate synthase [Capnocytophaga canimorsus Cc5]
Length = 343
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L+V YED+ L+ +NKP+G+ V PG T++ L + ++ S++ P V
Sbjct: 93 PIALDVVYEDEALLVVNKPAGMVVHPGHGNYSGTLINALIYHFENLPNNSSNR---PGLV 149
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
HR+ + TSG+L+ AKT+ A +A F KTS
Sbjct: 150 HRIDKDTSGLLVIAKTEAAMNHLALQFFHKTS 181
>gi|376291443|ref|YP_005163690.1| hypothetical protein CDC7B_2251 [Corynebacterium diphtheriae C7
(beta)]
gi|372104839|gb|AEX68436.1| hypothetical protein CDC7B_2251 [Corynebacterium diphtheriae C7
(beta)]
Length = 349
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
++ ++R+P EP +PY V YEDD ++ +KP L +P G + T +Q R S
Sbjct: 108 NDDVWFYRIPAPEPTIPYSCTVVYEDDTILVADKPPFLATMPRG--KHITNSATVQLRRS 165
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
LS P HRL R TSG+LL K K + F+++
Sbjct: 166 TGIDELS-------PAHRLDRLTSGLLLFTKHKRVRGAYQTLFSER 204
>gi|241758655|ref|ZP_04756769.1| YabO/YceC/SfhB family protein [Neisseria flavescens SK114]
gi|241321166|gb|EER57362.1| YabO/YceC/SfhB family protein [Neisseria flavescens SK114]
Length = 307
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKTMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 SELQHLNVEDIT----PIHRLDKDTAGVMLLSLNPATRRDYQTMFQEKT 178
>gi|424883104|ref|ZP_18306736.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519467|gb|EIW44199.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 341
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDDD+I ++KPSGL V PG T++ L S S + P
Sbjct: 87 DIP--LDILHEDDDVIVISKPSGLVVHPGAGNWTGTLVNALIHHCSDTLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|260893452|ref|YP_003239549.1| RluA family pseudouridine synthase [Ammonifex degensii KC4]
gi|260865593|gb|ACX52699.1| pseudouridine synthase, RluA family [Ammonifex degensii KC4]
Length = 331
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP+ P LE+ YED+DL+ +NKP G+ V PG ++ T++ L + +S S +
Sbjct: 75 EPE-PIPLEIIYEDEDLLVVNKPRGMVVHPGAGHKRGTLVNALLYHC--RSLSGINGVLR 131
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P VHRL + TSG+L+ AK A ++A ++
Sbjct: 132 PGIVHRLDKDTSGLLMVAKNDAAHLSLSAQLKER 165
>gi|408377786|ref|ZP_11175387.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Agrobacterium albertimagni AOL15]
gi|407748777|gb|EKF60292.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Agrobacterium albertimagni AOL15]
Length = 342
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YED DLI + KP GL V PG T++ L + S + P VHRL
Sbjct: 90 LDVLYEDKDLIVIAKPPGLVVHPGAGNWHGTLVNALIYHCGDTLSGIGG-VKRPGIVHRL 148
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+++ AK +A +A FAD
Sbjct: 149 DKDTSGVMVVAKNDIAHRHLADQFAD 174
>gi|456352961|dbj|BAM87406.1| pseudouridine synthase [Agromonas oligotrophica S58]
Length = 379
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDD+I ++KPSGL V P + T++ L S + P VHRL
Sbjct: 131 LTIVYEDDDIIVIDKPSGLVVHPAAGHESGTLVNALIAHCGASLSGIGG-VKRPGIVHRL 189
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 190 DKDTTGLMVVAKNDHAHASLSAQFAD 215
>gi|408790186|ref|ZP_11201816.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
florum 2F]
gi|408520526|gb|EKK20571.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
florum 2F]
Length = 291
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 6 FYSTKHKNSAPLQGAGSELVYHRLPWKEPDVPYL------LEVFYEDDDLIALNKPSGLQ 59
FY + + Q A + + P + PD P L LEV YED + +NKP+GL
Sbjct: 39 FYRNEQPITPAAQVAPGDQITVVFPPERPD-PQLASSLHPLEVIYEDAHWLVINKPAGLT 97
Query: 60 VLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
+PG + TV+ +++ R + S+ P V RL R TSGI+L AK +LA
Sbjct: 98 SVPGPSNRTDTVVNRVKGRLEQ----AGSENLRPHLVTRLDRFTSGIMLIAKDRLANNYA 153
Query: 120 AAYFADKT 127
AD+T
Sbjct: 154 TQQLADRT 161
>gi|299142141|ref|ZP_07035274.1| ribosomal large subunit pseudouridine synthase D [Prevotella oris
C735]
gi|298576230|gb|EFI48103.1| ribosomal large subunit pseudouridine synthase D [Prevotella oris
C735]
Length = 360
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NK +G+ V PG T++ + W K S +
Sbjct: 102 DIP--LDIVYEDDALMVINKQAGMVVHPGAGNFTGTLINAVAWHL-KDLESFDANDPEVG 158
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AK+ + F +KT+
Sbjct: 159 LVHRIDKDTSGLLVVAKTADAKSALGKQFFNKTT 192
>gi|299769556|ref|YP_003731582.1| putative pseudouridylate synthase [Acinetobacter oleivorans DR1]
gi|298699644|gb|ADI90209.1| putative pseudouridylate synthase [Acinetobacter oleivorans DR1]
Length = 302
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 17 LQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
L + + + Y+R E VP+ + +E+DDL+ ++KP L + P G + Q T+L +L+
Sbjct: 69 LYQSNTHIFYYRFLAYESHVPFEHRILFENDDLLVVDKPHFLTISPTGQYVQETLLVRLK 128
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + + P+HRL R T+G++L K ++ FA++
Sbjct: 129 KQTGNEFLT---------PIHRLDRETAGVVLFCKRVESRGIYQQLFAER 169
>gi|240137515|ref|YP_002961986.1| ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase) [Methylobacterium
extorquens AM1]
gi|240007483|gb|ACS38709.1| ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase) [Methylobacterium
extorquens AM1]
Length = 330
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V +ED+DLI ++KP+GL V P + T++ +L S + P VHRL
Sbjct: 86 LAVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGVSLSGIGG-VRRPGIVHRL 144
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA ++A FAD
Sbjct: 145 DKDTSGLLVVAKNDLAHQGLSAQFAD 170
>gi|29349120|ref|NP_812623.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
thetaiotaomicron VPI-5482]
gi|298386817|ref|ZP_06996372.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
1_1_14]
gi|383124267|ref|ZP_09944933.1| RluA family pseudouridine synthase [Bacteroides sp. 1_1_6]
gi|29341027|gb|AAO78817.1| ribosomal large subunit pseudouridine synthase D [Bacteroides
thetaiotaomicron VPI-5482]
gi|251839236|gb|EES67320.1| RluA family pseudouridine synthase [Bacteroides sp. 1_1_6]
gi|298260491|gb|EFI03360.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
1_1_14]
Length = 357
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED ++ +NKP+GL V PG T++ L W K + H VHR+
Sbjct: 107 LNIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHM-KDIPEYDANDPHVGLVHRI 165
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + F +KT+
Sbjct: 166 DKDTSGLLVIAKTPDAKTNLGIQFFNKTT 194
>gi|319408111|emb|CBI81764.1| ribosomal large subunit pseudouridine synthase D [Bartonella
schoenbuchensis R1]
Length = 340
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHR 98
+L++ +EDD +I +NKP+GL V PG T++ L S + P VHR
Sbjct: 79 VLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCGDSLSGIGG-VKRPGIVHR 137
Query: 99 LGRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
L + TSG+++ AK A ++A F+D +T +D
Sbjct: 138 LDKNTSGVMVVAKNDFAHKSLSAQFSDHGRTCALD 172
>gi|227501848|ref|ZP_03931897.1| ribosomal pseudouridine synthase [Corynebacterium accolens ATCC
49725]
gi|227077342|gb|EEI15305.1| ribosomal pseudouridine synthase [Corynebacterium accolens ATCC
49725]
Length = 327
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 19 GAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G ++ ++R+P E VPY + + YEDD+++ +KP + +P T +L R
Sbjct: 82 GKDVDVFFYRIPAPEIPVPYDIPIIYEDDNILVADKPPFMATMPRARHIVETATVRL--R 139
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
S ++ L VP HRL R TSG+LL K K + + FA+K
Sbjct: 140 RSTGNNEL-------VPAHRLDRLTSGLLLFTKHKDVRGAYQSLFAEK 180
>gi|254559695|ref|YP_003066790.1| ribosomal large subunit pseudouridine synthase D [Methylobacterium
extorquens DM4]
gi|254266973|emb|CAX22773.1| ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase) [Methylobacterium
extorquens DM4]
Length = 330
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V +ED+DLI ++KP+GL V P + T++ +L S + P VHRL
Sbjct: 86 LAVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGVSLSGIGG-VRRPGIVHRL 144
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA ++A FAD
Sbjct: 145 DKDTSGLLVVAKNDLAHQGLSAQFAD 170
>gi|86358939|ref|YP_470831.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
gi|86283041|gb|ABC92104.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
Length = 354
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P LE+ +EDDDLI ++KP+GL V PG T++ L S +
Sbjct: 97 KGEDIP--LEILHEDDDLIVISKPAGLVVHPGSGNWTGTLVNALIHHCGDTLSGIGG-VR 153
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + T+G+++ AK +A ++ FAD
Sbjct: 154 RPGIVHRLDKDTTGVMVVAKNDVAHRHLSLQFAD 187
>gi|299134311|ref|ZP_07027504.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
gi|298591058|gb|EFI51260.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
Length = 347
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDDL+ LNKP GL V P + T++ L S + P VHRL
Sbjct: 99 LNIVYEDDDLLVLNKPKGLVVHPAAGHETGTLVNALIAHCGTSLSGIGG-VKRPGIVHRL 157
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A + A FAD
Sbjct: 158 DKDTTGLMVVAKNDRAHQSLTAQFAD 183
>gi|298292656|ref|YP_003694595.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296929167|gb|ADH89976.1| pseudouridine synthase, RluA family [Starkeya novella DSM 506]
Length = 348
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDDDLI ++KP+GL V P T++ L + S + P
Sbjct: 91 DIP--LDIVFEDDDLIVIDKPAGLVVHPAPGNPDGTLVNALLFHCGASLSGIGG-VRRPG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + TSG+++ AK A +AA FAD
Sbjct: 148 IVHRLDKDTSGLMVVAKNDRAHQKLAAQFAD 178
>gi|254442724|ref|ZP_05056200.1| pseudouridine synthase, RluA family [Verrucomicrobiae bacterium
DG1235]
gi|198257032|gb|EDY81340.1| pseudouridine synthase, RluA family [Verrucomicrobiae bacterium
DG1235]
Length = 307
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV +ED+ ++ +NKP+GL V PG + T+ L Q S + P VHRL
Sbjct: 81 LEVIFEDEHMVVVNKPAGLVVHPGAGPDEPTLAHGLLHHCQGQLSGIGG-VERPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
R TSG+++ AKT +A ++ F ++ V
Sbjct: 140 DRETSGLIMAAKTDVAHRALSELFQSRSLV 169
>gi|365960430|ref|YP_004941997.1| 23S rRNA pseudouridine synthase [Flavobacterium columnare ATCC
49512]
gi|365737111|gb|AEW86204.1| 23S rRNA pseudouridine synthase [Flavobacterium columnare ATCC
49512]
Length = 345
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD LI +NKP GL V PG T+ L + + S++ P VHR+
Sbjct: 97 LDIIYEDDALIVINKPVGLVVHPGHGNYTGTLANALAFHFENLPMNSSNR---PGLVHRI 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A +A F +KT+
Sbjct: 154 DKDTSGLLVVAKTEQAMAHLAKQFEEKTT 182
>gi|254477672|ref|ZP_05091058.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp. R11]
gi|214031915|gb|EEB72750.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp. R11]
Length = 344
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LEV +EDDDLI +NKP+G+ V P T++ L S + P
Sbjct: 82 DIP--LEVIFEDDDLIVINKPAGMVVHPAPGTPSGTLVNALLHHCGDNLSGVGG-VKRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK+ A +AA F T
Sbjct: 139 IVHRIDKETSGLLVVAKSDAAHQGLAAQFEKHT 171
>gi|428186445|gb|EKX55295.1| hypothetical protein GUITHDRAFT_156769 [Guillardia theta CCMP2712]
Length = 337
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW----RASKQSSSLSSQA 90
D+P L V +ED+D+I +NK S L V P T++ L W R+S S + ++
Sbjct: 78 DIP--LAVIHEDEDVIVINKQSDLVVHPCPTAPNGTLVNALAWHFMHRSSGSLSQVGAEN 135
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ P VHRL R T+G+++ AKT+ A + FA +++
Sbjct: 136 ARPGIVHRLDRNTTGVMVAAKTEFAHWSLYEQFALRST 173
>gi|423330428|ref|ZP_17308212.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL03T12C09]
gi|409232044|gb|EKN24892.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL03T12C09]
Length = 545
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP G+ +PG +V ++L S L +A+ P+ VHRL
Sbjct: 339 LDILYEDDYLLVINKPEGMLSVPGK-GDVDSVYQRL--------SILYPEATGPIIVHRL 389
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK A + A F ++T
Sbjct: 390 DMATSGLLLAAKTKEAHQNLQAQFKNRT 417
>gi|395784617|ref|ZP_10464444.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
gi|395422191|gb|EJF88402.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
Length = 341
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHR 98
+L++ +EDD +I +NKP+GL V PG T++ L S + P VHR
Sbjct: 80 VLDILFEDDHIIVINKPAGLVVHPGNGNWTGTLVNALIHHCGYSLSGIGG-VKRPGIVHR 138
Query: 99 LGRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
L + TSG+++ AK A ++A F+D +T +D
Sbjct: 139 LDKNTSGVMVVAKNDFAHKSLSAQFSDHGRTCALD 173
>gi|387132419|ref|YP_006298391.1| RluA family pseudouridine synthase [Prevotella intermedia 17]
gi|386375267|gb|AFJ09642.1| pseudouridine synthase, RluA family [Prevotella intermedia 17]
Length = 362
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED +++ +NKP+GL V PG T++ + W +
Sbjct: 107 DIP--LNVVYEDSEIMVINKPAGLVVHPGAGNFHGTLINAIAWHL-RDLKDFDPNDPAVG 163
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+LL AKT AKT + F +KT+
Sbjct: 164 LVHRIDKDTSGLLLIAKTPDAKTFLGKQFFNKTT 197
>gi|347761723|ref|YP_004869284.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Gluconacetobacter xylinus NBRC 3288]
gi|347580693|dbj|BAK84914.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Gluconacetobacter xylinus NBRC 3288]
Length = 323
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED DLI L+KP+G+ V P + T++ L + + + P VHRL
Sbjct: 85 LDILYEDRDLIVLDKPAGMVVHPAPGNEDGTLVNALLAHCGDSLTGIGGE-RRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSGI++ AKT++A ++ FA++
Sbjct: 144 DKDTSGIMVAAKTEMAHQALSLAFAER 170
>gi|269101904|ref|ZP_06154601.1| ribosomal large subunit pseudouridine synthase D [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268161802|gb|EEZ40298.1| ribosomal large subunit pseudouridine synthase D [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 324
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W+ D+P L++ YEDDD+I +NKP V PG TVL L W SL+
Sbjct: 77 WEAQDIP--LDIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLW----HCPSLAEVP 130
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKT 117
+ VHRL + T+G+++ AKT A+T
Sbjct: 131 RAGI-VHRLDKDTTGLMVVAKTVQAQT 156
>gi|256841173|ref|ZP_05546680.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
sp. D13]
gi|256737016|gb|EEU50343.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
sp. D13]
Length = 548
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP G+ +PG +V ++L S L +A+ P+ VHRL
Sbjct: 339 LDILYEDDYLLVINKPEGMLSVPGK-GDVDSVYQRL--------SILYPEATGPIIVHRL 389
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK A + A F ++T
Sbjct: 390 DMATSGLLLAAKTKEAHQNLQAQFKNRT 417
>gi|430377235|ref|ZP_19431368.1| putative RNA pseudouridine synthase [Moraxella macacae 0408225]
gi|429540372|gb|ELA08401.1| putative RNA pseudouridine synthase [Moraxella macacae 0408225]
Length = 320
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+ P Q G L+Y+R +EP +P+ + D+ LI ++KP L V+P G F ++T+L
Sbjct: 67 NTPYQ-VGQTLLYYRDVGQEPAIPFKERILAVDEHLIVVDKPHFLPVIPTGRFVKQTLLA 125
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ Q + + + P+HRL + T+G++L + ++ FA K
Sbjct: 126 RLRSHPKLQHLDVMAIS----PIHRLDKDTAGVMLFSHNPTTRSNYQQLFAKK 174
>gi|418061568|ref|ZP_12699419.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
gi|373564871|gb|EHP90949.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
Length = 343
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V +ED+DLI ++KP+GL V P + T++ +L S + P VHRL
Sbjct: 99 LAVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGVSLSGIGG-VRRPGIVHRL 157
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA ++A FAD
Sbjct: 158 DKDTSGLLVVAKNDLAHQGLSAQFAD 183
>gi|218509234|ref|ZP_03507112.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli Brasil 5]
Length = 274
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDLI ++KP+GL V PG T++ L S + P
Sbjct: 68 DIP--LDILYEDDDLIVISKPAGLVVHPGSGNWTGTLVNALIHHCGATLSGIGG-VRRPG 124
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 125 IVHRLDKDTTGVMVVAKNDVAHRHLSLQFAD 155
>gi|373957356|ref|ZP_09617316.1| pseudouridine synthase, RluA family [Mucilaginibacter paludis DSM
18603]
gi|373893956|gb|EHQ29853.1| pseudouridine synthase, RluA family [Mucilaginibacter paludis DSM
18603]
Length = 347
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP+GL V PG T++ L + +Q +L P VHR+
Sbjct: 96 LDIVYEDDDVLVVNKPAGLVVHPGYNNYTGTLVNGLVYHF-QQLPTLPGNDGRPGLVHRI 154
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+LL +K + + T +A F + T
Sbjct: 155 DKDTSGLLLISKNERSMTWLARQFYEHT 182
>gi|378827321|ref|YP_005190053.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii HH103]
gi|365180373|emb|CCE97228.1| K06180 ribosomal large subunit pseudouridine synthase D
[Sinorhizobium fredii HH103]
Length = 390
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P ++V YEDDDLI L KP+GL V PG T++ L S +
Sbjct: 132 KGEDIP--IDVLYEDDDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VR 188
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A ++ FAD
Sbjct: 189 RPGIVHRLDKETSGVMVVAKNDTAHRHLSDQFAD 222
>gi|225419732|ref|ZP_03762035.1| hypothetical protein CLOSTASPAR_06070 [Clostridium asparagiforme
DSM 15981]
gi|225041622|gb|EEG51868.1| hypothetical protein CLOSTASPAR_06070 [Clostridium asparagiforme
DSM 15981]
Length = 303
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 33 EPDV---PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
EP++ P L+V YED+D+I +NKP G+ V P T++ L Q S ++
Sbjct: 68 EPEILAEPMDLDVLYEDEDIILINKPKGMVVHPAAGHYTHTLVNGLLDHCRGQLSGING- 126
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ T+G+++ K LA +C+A + +
Sbjct: 127 VMRPGIVHRIDMDTTGVIIACKNDLAHSCLAEQLKEHS 164
>gi|239948112|ref|ZP_04699865.1| ribosomal large subunit pseudouridine synthase, RluA family
[Rickettsia endosymbiont of Ixodes scapularis]
gi|239922388|gb|EER22412.1| ribosomal large subunit pseudouridine synthase, RluA family
[Rickettsia endosymbiont of Ixodes scapularis]
Length = 310
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 31 WKEPD------VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
+KEP+ L++ YEDDDLI +NK +G+ V PG T++ L + S
Sbjct: 64 FKEPEELKIAAANIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSD 123
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
SS+ P VHRL + T+G+++ AK A +A
Sbjct: 124 IGSSE--RPGIVHRLDKNTTGLMVVAKNNKAHMLLA 157
>gi|148257971|ref|YP_001242556.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
gi|146410144|gb|ABQ38650.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
Length = 326
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YEDDD++ L+KP+GL V P + T++ L S + P VHRL
Sbjct: 78 LHVVYEDDDIVVLDKPAGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VKRPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 137 DKDTTGLMVVAKNDHAHASLSAQFAD 162
>gi|421097263|ref|ZP_15557957.1| S4 domain protein [Leptospira borgpetersenii str. 200901122]
gi|410799754|gb|EKS01820.1| S4 domain protein [Leptospira borgpetersenii str. 200901122]
Length = 378
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ 67
S K S L G +VY + +EP V ++ YED+ +A+NKP L V P G ++
Sbjct: 53 SGKKVKSGILLREGDNVVYQPIEREEPPVRRDYKILYEDEFFVAVNKPGDLPVHPAGKYR 112
Query: 68 QRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ +L L+ S + + VHRL R TSG++L AK + ++ +F+
Sbjct: 113 KGNLLTLLKE---------SGKFENLFTVHRLDRETSGVVLFAKDSKTASLLSGFFS 160
>gi|395007664|ref|ZP_10391377.1| 23S RNA-specific pseudouridylate synthase [Acidovorax sp. CF316]
gi|394314300|gb|EJE51230.1| 23S RNA-specific pseudouridylate synthase [Acidovorax sp. CF316]
Length = 292
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+ P +G G + Y+R EP++P+ V Y+D L+ +KP + V P G + Q T+L
Sbjct: 56 ARPFEG-GLRVYYYRHLADEPEIPFTETVLYQDGHLLVADKPHFMPVTPSGRYLQHTLLV 114
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+L+ R S P+HR+ R T+G++L + + + A F D+T
Sbjct: 115 RLKRRLGLPELS---------PLHRIDRDTAGLVLFSVQQRTRGAYQALFRDRT 159
>gi|332292606|ref|YP_004431215.1| RluA family pseudouridine synthase [Krokinobacter sp. 4H-3-7-5]
gi|332170692|gb|AEE19947.1| pseudouridine synthase, RluA family [Krokinobacter sp. 4H-3-7-5]
Length = 347
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
++V YEDD L+ +NKP+G+ V PG T++ L ++ S + P VHR+
Sbjct: 97 IDVVYEDDQLMVVNKPAGMVVHPGHGNYSGTLINALIHHVDNLPNNSSDR---PGLVHRI 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T ++ F +KT+
Sbjct: 154 DKDTSGLLVVAKTEQAMTHLSKQFFNKTT 182
>gi|189423553|ref|YP_001950730.1| pseudouridine synthase [Geobacter lovleyi SZ]
gi|189419812|gb|ACD94210.1| pseudouridine synthase, RluA family [Geobacter lovleyi SZ]
Length = 326
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YED DLI +NK +G+ V PG T++ L + S P VHRL
Sbjct: 82 LDVLYEDHDLIVINKSAGMTVHPGAGVDSGTLVNALLGHCTDLSG--IGGEIRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFA 124
+GTSG+L+ AK +A +A FA
Sbjct: 140 DKGTSGVLVVAKNDIAHRGLAEQFA 164
>gi|347549239|ref|YP_004855567.1| hypothetical protein LIV_1819 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982310|emb|CBW86304.1| Conserved hypothetical protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 302
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+++YED D++ +NKP G+ V P T++ L + K S ++ + P
Sbjct: 76 DIP--LDIYYEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHC-KDLSGINGKIR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +A DKTS
Sbjct: 132 IVHRIDKDTSGLLMVAKNDHAHESLAKQLKDKTS 165
>gi|315038468|ref|YP_004032036.1| pseudouridine synthase [Lactobacillus amylovorus GRL 1112]
gi|325956884|ref|YP_004292296.1| pseudouridine synthase [Lactobacillus acidophilus 30SC]
gi|385817725|ref|YP_005854115.1| pseudouridine synthase [Lactobacillus amylovorus GRL1118]
gi|312276601|gb|ADQ59241.1| pseudouridine synthase [Lactobacillus amylovorus GRL 1112]
gi|325333449|gb|ADZ07357.1| pseudouridine synthase [Lactobacillus acidophilus 30SC]
gi|327183663|gb|AEA32110.1| pseudouridine synthase [Lactobacillus amylovorus GRL1118]
Length = 302
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD+I +NKP G+ V P T++ L + + + S + P
Sbjct: 76 DIP--LDIVYEDDDVIVVNKPQGMVVHPAPGHSDHTLVNALLYHT--KDLAKSPEGFRPG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A+ + A KT+
Sbjct: 132 IVHRIDKDTSGLLMIAKNAKARESLEDQLAHKTN 165
>gi|297183636|gb|ADI19762.1| hypothetical protein [uncultured gamma proteobacterium EB000_37F04]
Length = 322
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
R+ W +P L++ YED+ +I LNKP+GL V P Q T++ L A + S+
Sbjct: 78 RVEWAPEPLP--LDILYEDEHVIVLNKPAGLVVHPATGHQTGTLVNGLLAHAPEMSALPR 135
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL + TSG++L A++ +A + A AD++
Sbjct: 136 GGI-----VHRLDKDTSGVMLAARSAIAHKSLVAQLADRS 170
>gi|330836420|ref|YP_004411061.1| pseudouridine synthase [Sphaerochaeta coccoides DSM 17374]
gi|329748323|gb|AEC01679.1| pseudouridine synthase, RluA family [Sphaerochaeta coccoides DSM
17374]
Length = 329
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 22/117 (18%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ-SSSLSSQA 90
EP D+P L++ YEDDD++ ++KP G+ V PG TV+ L +R + Q
Sbjct: 73 EPQDIP--LDILYEDDDILFIDKPQGIVVHPGAGNPDGTVVNALVFRYGPDFIRAYGGQD 130
Query: 91 SH------------------PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
H P VHRL + TSG+++ A+T+LA +A F++ T+V
Sbjct: 131 EHEDAGDETDEAVDRTDFLRPGIVHRLDKDTSGVMVIARTRLAHGYMARQFSEHTAV 187
>gi|167624902|ref|YP_001675196.1| pseudouridine synthase [Shewanella halifaxensis HAW-EB4]
gi|167354924|gb|ABZ77537.1| pseudouridine synthase [Shewanella halifaxensis HAW-EB4]
Length = 279
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+EV +EDDD++A++KP+GL V R+ L + + R + H PVHRL
Sbjct: 25 IEVLFEDDDVVAIHKPAGLLV-------HRSYLARRE-RFFAMQLTRDKVGCHVFPVHRL 76
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
R TSGILL AK+ + FAD T
Sbjct: 77 DRPTSGILLFAKSSEMANALCGQFADHT 104
>gi|424911180|ref|ZP_18334557.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847211|gb|EJA99733.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 340
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L V YED+DLI L KP+GL V PG T++ L S +
Sbjct: 84 KGEDIP--LNVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VK 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A +AA FAD
Sbjct: 141 RPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFAD 174
>gi|256851102|ref|ZP_05556491.1| pseudouridylate synthase [Lactobacillus jensenii 27-2-CHN]
gi|260660526|ref|ZP_05861441.1| pseudouridylate synthase [Lactobacillus jensenii 115-3-CHN]
gi|297205967|ref|ZP_06923362.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii JV-V16]
gi|256616164|gb|EEU21352.1| pseudouridylate synthase [Lactobacillus jensenii 27-2-CHN]
gi|260548248|gb|EEX24223.1| pseudouridylate synthase [Lactobacillus jensenii 115-3-CHN]
gi|297149093|gb|EFH29391.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii JV-V16]
Length = 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L++ YED+D+I +NKP G+ V P T++ L ++ S +
Sbjct: 71 EPEDIP--LDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTLVNALMNHTKFLAA--SPEGF 126
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHR+ + TSG+L+ AK A+T + + A KT+
Sbjct: 127 RPGIVHRIDKDTSGLLMIAKNANARTSLESQLAHKTN 163
>gi|430004492|emb|CCF20287.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Rhizobium sp.]
Length = 328
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YED D+I + KP GL V PG T++ L + S + P
Sbjct: 74 DIP--LDVLYEDADVIVILKPPGLVVHPGAGNWTGTLVNALIHHCGESLSGIGG-VRRPG 130
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + TSG+L+ AK +A +AA FAD
Sbjct: 131 IVHRLDKDTSGVLVAAKNDIAHRHLAAQFAD 161
>gi|227823294|ref|YP_002827266.1| ribosomal large subunit pseudouridine synthase D [Sinorhizobium
fredii NGR234]
gi|227342295|gb|ACP26513.1| putative ribosomal large subunit pseudouridine synthase D
[Sinorhizobium fredii NGR234]
Length = 352
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P ++V YEDDDLI L KP+GL V PG T++ L S +
Sbjct: 94 KGEDIP--IDVLYEDDDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VR 150
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A ++ FAD
Sbjct: 151 RPGIVHRLDKETSGVMVVAKNDAAHRHLSDQFAD 184
>gi|451940248|ref|YP_007460886.1| ribosomal large subunit pseudouridine synthase D [Bartonella
australis Aust/NH1]
gi|451899635|gb|AGF74098.1| ribosomal large subunit pseudouridine synthase D [Bartonella
australis Aust/NH1]
Length = 334
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V +ED+ +I +NKP+GL V PG T++ L + S ++ P VHRL
Sbjct: 81 LDVLFEDEHIIVINKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGING-IKRPGIVHRL 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK A ++A FAD ++ V+D
Sbjct: 140 DKNTSGVMVIAKNDSAHKSLSAQFADHGRSGVLD 173
>gi|408789072|ref|ZP_11200781.1| ribosomal large subunit pseudouridine synthase D [Rhizobium lupini
HPC(L)]
gi|408485046|gb|EKJ93391.1| ribosomal large subunit pseudouridine synthase D [Rhizobium lupini
HPC(L)]
Length = 340
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L V YED+DLI L KP+GL V PG T++ L S +
Sbjct: 84 KGEDIP--LNVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VK 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + TSG+++ AK A +AA FAD
Sbjct: 141 RPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFAD 174
>gi|404378747|ref|ZP_10983831.1| RluA family pseudouridine synthase [Simonsiella muelleri ATCC
29453]
gi|294483870|gb|EFG31554.1| RluA family pseudouridine synthase [Simonsiella muelleri ATCC
29453]
Length = 306
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 14 SAPLQGAGSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 71
+ P Q AG + Y+R +E P + + + D+DLI ++KP L V+P G F + T+
Sbjct: 67 NTPFQ-AGERIFYYREISREDEPRISFDERILSVDNDLIVVDKPHFLPVIPSGRFLRETL 125
Query: 72 LKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
L +L+ R+ Q +++ P+HRL + T+G++L + + F +K
Sbjct: 126 LTRLRLRSDLQHLNVADIT----PIHRLDKDTAGVILLSHNPKTRAIYQQLFQEKN 177
>gi|85707640|ref|ZP_01038706.1| pseudouridine synthase D large subunit [Erythrobacter sp. NAP1]
gi|85689174|gb|EAQ29177.1| pseudouridine synthase D large subunit [Erythrobacter sp. NAP1]
Length = 317
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V +ED+DLI +NKP+G+ V P T++ L Q S + A P VHR+
Sbjct: 80 LDVAFEDEDLIVVNKPAGMVVHPAAGNPDGTLVNALLHHCRGQLSGIGGVA-RPGIVHRI 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK+ A +AA FA+ +
Sbjct: 139 DKDTSGLLVVAKSDAAHEGLAAQFAEHS 166
>gi|390957635|ref|YP_006421392.1| RluA family pseudouridine synthase [Terriglobus roseus DSM 18391]
gi|390412553|gb|AFL88057.1| pseudouridine synthase, RluA family [Terriglobus roseus DSM 18391]
Length = 298
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G LV+ R W E + P EV +ED L+A+NKP GL LPGG F + T+L+ +Q
Sbjct: 62 GQTLVWDRPTWIEAETPQHFEVLFEDPYLLAVNKPGGLPTLPGGGFMENTLLRLVQ---- 117
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
KQ S + PVHRLGR T+GI+L AKT ++A
Sbjct: 118 KQRPSAN-------PVHRLGRATTGIVLFAKTSKVAAHLSA 151
>gi|307564398|ref|ZP_07626939.1| pseudouridine synthase, RluA family [Prevotella amnii CRIS 21A-A]
gi|307346758|gb|EFN92054.1| pseudouridine synthase, RluA family [Prevotella amnii CRIS 21A-A]
Length = 361
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YEDD L+ + KP+GL V PG T++ + W + +S +
Sbjct: 103 DIP--LDVVYEDDSLMVVMKPAGLVVHPGAGNFHGTLINAIAWHL-RGLASFDANDPEVG 159
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+LL AKT AK+ + F KT+
Sbjct: 160 LVHRIDKDTSGLLLIAKTPEAKSSLGKQFFYKTT 193
>gi|390954680|ref|YP_006418438.1| ribosomal large subunit pseudouridine synthase D [Aequorivita
sublithincola DSM 14238]
gi|390420666|gb|AFL81423.1| ribosomal large subunit pseudouridine synthase D [Aequorivita
sublithincola DSM 14238]
Length = 348
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+++ YEDD ++ +NK +G+ V PG T++ L + ++ S++ P VHR+
Sbjct: 99 IDIVYEDDAVLVVNKAAGMVVHPGHGNYSGTLINALTYHFENHPNNSSNR---PGLVHRI 155
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A T +A F DK++
Sbjct: 156 DKDTSGLLVVAKTEEAMTHLAKQFFDKST 184
>gi|254294738|ref|YP_003060761.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
gi|254043269|gb|ACT60064.1| pseudouridine synthase, RluA family [Hirschia baltica ATCC 49814]
Length = 369
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V +ED+ LI LNKP+GL V P T++ L + Q + A P
Sbjct: 95 DIP--LDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAGQLPGIGGVAR-PG 151
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
VHRL + TSG+++ AKT+ A T +++ F
Sbjct: 152 IVHRLDKDTSGVMVAAKTEFAHTGLSSLF 180
>gi|184155639|ref|YP_001843979.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
gi|183226983|dbj|BAG27499.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
Length = 304
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP G+ V P T++ L + A SS++ + P VHR+
Sbjct: 81 LDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALMYHAP--LSSINGELR-PGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AKT A + A +K+++
Sbjct: 138 DKDTSGLLMVAKTDRAHRSLTAQLKEKSNL 167
>gi|260663035|ref|ZP_05863928.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
gi|260552656|gb|EEX25656.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
Length = 304
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP G+ V P T++ L + A SS++ + P VHR+
Sbjct: 81 LDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALMYHAP--LSSINGELR-PGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AKT A + A +K+++
Sbjct: 138 DKDTSGLLMVAKTDRAHRSLTAQLKEKSNL 167
>gi|190893167|ref|YP_001979709.1| RNA-pseudouridylate synthase, ribosomal large subunit D [Rhizobium
etli CIAT 652]
gi|190698446|gb|ACE92531.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli CIAT 652]
Length = 354
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDLI ++KP+GL V PG T++ L S + P
Sbjct: 100 DIP--LDILYEDDDLIVISKPAGLVVHPGSGNWTGTLVNALIHHCGATLSGIGG-VRRPG 156
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 157 IVHRLDKDTTGVMVVAKNDVAHRHLSLQFAD 187
>gi|238854437|ref|ZP_04644777.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|260664477|ref|ZP_05865329.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
gi|313472076|ref|ZP_07812568.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|238832930|gb|EEQ25227.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|239530107|gb|EEQ69108.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|260561542|gb|EEX27514.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
Length = 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L++ YED+D+I +NKP G+ V P T++ L + ++ S +
Sbjct: 71 EPEDIP--LDIVYEDNDVIVVNKPQGMVVHPSAGHPNHTLVNALMNHTKELAA--SPEGF 126
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHR+ + TSG+L+ AK A+ + + A KT+
Sbjct: 127 RPGIVHRIDKDTSGLLMIAKNTQARESLESQLAHKTN 163
>gi|440730269|ref|ZP_20910362.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens DAR61454]
gi|440379218|gb|ELQ15817.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens DAR61454]
Length = 335
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 23 ELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
E H LP D+P LEV YEDD +I LNKP+GL V PG T++ L +R
Sbjct: 82 ETQTHALPE---DIP--LEVLYEDDQVIVLNKPAGLVVHPGAGNPSGTLVNALLYR---- 132
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
SL+S + VHRL + TSG ++ A+T A T + A + +
Sbjct: 133 DPSLASLPRAGI-VHRLDKDTSGAMVVARTLPAHTSLVAQLSAR 175
>gi|373499706|ref|ZP_09590109.1| hypothetical protein HMPREF9140_00227 [Prevotella micans F0438]
gi|371956793|gb|EHO74573.1| hypothetical protein HMPREF9140_00227 [Prevotella micans F0438]
Length = 363
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YED DL+ +NK +G+ V PG T++ + W K S + VHR+
Sbjct: 110 LEIVYEDADLLVVNKHAGMVVHPGAGNFHGTLINAIAWHL-KDLESFNPNDPDVGLVHRI 168
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ T+G+L+ AKT AKT + F +KT+
Sbjct: 169 DKNTTGLLVIAKTPDAKTSLGKQFFNKTT 197
>gi|357058623|ref|ZP_09119471.1| hypothetical protein HMPREF9334_01188 [Selenomonas infelix ATCC
43532]
gi|355373579|gb|EHG20895.1| hypothetical protein HMPREF9334_01188 [Selenomonas infelix ATCC
43532]
Length = 303
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 8 STKHKNSAPLQGAGSELVYHRLPWKE-----PDVPYLLEVFYEDDDLIALNKPSGLQVLP 62
T K + L+G G E+V P +E D+P L++ YED D+I +NK G+ V P
Sbjct: 44 DTARKANYKLRG-GEEIVCTMPPAEEIEICAEDIP--LDILYEDADIIVVNKARGMVVHP 100
Query: 63 GGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122
T++ L W S + A P VHRL + TSG+++ AK +A +A
Sbjct: 101 AAGIYTGTLVNALLWHCHDLSG--INGALRPGIVHRLDKDTSGVMVAAKNDMAHHYLARQ 158
Query: 123 FADKTS 128
DK +
Sbjct: 159 IRDKDA 164
>gi|410678768|ref|YP_006931170.1| hypothetical protein BafHLJ01_0020 [Borrelia afzelii HLJ01]
gi|408536156|gb|AFU74287.1| hypothetical protein BafHLJ01_0020 [Borrelia afzelii HLJ01]
Length = 326
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+++ YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IDIIYEDSNIIVLNKPQGILSHPGISHWDDTVVNFLLYHIKGLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F D+ +
Sbjct: 144 DKDTSGVLICAKNISTVRFLAQQFKDRRT 172
>gi|349609245|ref|ZP_08888648.1| hypothetical protein HMPREF1028_00623 [Neisseria sp. GT4A_CT1]
gi|348612752|gb|EGY62365.1| hypothetical protein HMPREF1028_00623 [Neisseria sp. GT4A_CT1]
Length = 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + DD LI ++KP L V+P G F + T+L +L+ R Q +++
Sbjct: 88 EPVIPFEEKILHIDDHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVADIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
PVHRL + T+G++L + + F +K+
Sbjct: 146 --PVHRLDKDTAGVMLLSHNPATRRDYQTMFQEKS 178
>gi|323456553|gb|EGB12420.1| hypothetical protein AURANDRAFT_19938 [Aureococcus anophagefferens]
Length = 283
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVL-PGGLFQQRTVLKQLQWRASKQSS 84
Y + ++ P+ LEV YEDD L + KP+G+ PGG R L+ A K +
Sbjct: 30 YVQARFRSAKAPFDLEVAYEDDYLAVVVKPAGVPTYSPGGDHGGRANLRSCLPFALKPPA 89
Query: 85 SLSSQAS---HPVPVHRLGRGTSGILLCAKTKL 114
S + P PVHRL + TSG++LCAKTKL
Sbjct: 90 SCRAGDEVLRRPQPVHRLDKATSGLVLCAKTKL 122
>gi|110635475|ref|YP_675683.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
gi|110286459|gb|ABG64518.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
Length = 343
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ LI ++KP+GL V PG T++ L S + P
Sbjct: 88 DIP--LDILYEDEALIVIDKPAGLVVHPGPGNWTGTLVNALIHHCGDTLSGIGG-VRRPG 144
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL R TSG+++ AKT A +A FAD
Sbjct: 145 IVHRLDRDTSGVMVVAKTDQAHRVLAEAFAD 175
>gi|51474013|ref|YP_067770.1| pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|383752788|ref|YP_005427888.1| pseudouridine synthase [Rickettsia typhi str. TH1527]
gi|383843623|ref|YP_005424126.1| pseudouridine synthase [Rickettsia typhi str. B9991CWPP]
gi|51460325|gb|AAU04288.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|380759431|gb|AFE54666.1| pseudouridine synthase [Rickettsia typhi str. TH1527]
gi|380760270|gb|AFE55504.1| pseudouridine synthase [Rickettsia typhi str. B9991CWPP]
Length = 313
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 31 WKEPD------VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
+KEP+ L++ YEDDDLI +NK +G+ V PG T++ L +K S
Sbjct: 64 FKEPEELKITSANITLDIIYEDDDLIVINKAAGITVHPGAKHHDNTLVNAL-LHHTKNLS 122
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+ S A P VHRL + T+G+++ AK A +A
Sbjct: 123 DIGS-AERPGIVHRLDKETTGLMVVAKNNKAHMLLA 157
>gi|300780235|ref|ZP_07090091.1| probable ribosomal pseudouridine synthase [Corynebacterium
genitalium ATCC 33030]
gi|300534345|gb|EFK55404.1| probable ribosomal pseudouridine synthase [Corynebacterium
genitalium ATCC 33030]
Length = 339
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G+++ ++R P EP VP+ + V YEDD ++ +NKP L +P T ++ R S
Sbjct: 89 GTDVFFYRRPAPEPRVPFEVTVVYEDDAIMVVNKPPFLATMPRA--SHITESATVRLRRS 146
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ L+ P HRL R TSG+LL K + FA +
Sbjct: 147 TGNEELT-------PAHRLDRMTSGLLLFTKKASVRGAYQQLFASR 185
>gi|320590514|gb|EFX02957.1| drap deaminase [Grosmannia clavigera kw1407]
Length = 528
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
E + HR EP V + V +EDDD++ +NKP+G+ V P G +Q +V++ L +A +
Sbjct: 116 ERISHRTHRHEPPVTAEPIVVIHEDDDMVVINKPAGVPVHPAGRYQYNSVVEML--KAQR 173
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLA 115
+ + P P +RL R TSGI+ AK+ A
Sbjct: 174 EPGFM------PYPCNRLDRLTSGIMFLAKSPAA 201
>gi|383311915|ref|YP_005364716.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378930575|gb|AFC69084.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Rickettsia amblyommii str. GAT-30V]
Length = 313
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S A P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVYPGAGHHDDTLVNAL-LHHTKNLSDIGSSAR-PGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|350272994|ref|YP_004884302.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
gi|348597836|dbj|BAL01797.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
Length = 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 17 LQGAGSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRT 70
L+ G E V LP +P D+P L+V YED D+I +NKP GL V P T
Sbjct: 52 LRLTGGETVTVELPNPQPTEVRPEDIP--LDVVYEDGDVIVVNKPKGLVVHPAPGHPDGT 109
Query: 71 VLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
++ L S + P VHR+ R TSG+++ AK A +AA D T
Sbjct: 110 LVNALLHHCGSSLSGIGG-VLRPGIVHRIDRDTSGLIIAAKNDFAHQKLAAQLQDHT 165
>gi|227529323|ref|ZP_03959372.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
vaginalis ATCC 49540]
gi|227350751|gb|EEJ41042.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
vaginalis ATCC 49540]
Length = 305
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + S+++ + P VHR+
Sbjct: 80 LDIVYEDDDVIVVNKPQGMVVHPAPGHPNHTLVNALLYHSP--LSTINGEFR-PGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK LA +AA KT+
Sbjct: 137 DKDTSGLLMIAKNDLAHRSLAAQLKAKTN 165
>gi|254495420|ref|ZP_05108344.1| ribosomal large subunit pseudouridine synthase D [Polaribacter sp.
MED152]
gi|85819775|gb|EAQ40932.1| ribosomal large subunit pseudouridine synthase D [Polaribacter sp.
MED152]
Length = 345
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD +I +NKP+G+ V PG T++ L ++ + + P
Sbjct: 92 DIP--LDIIYEDDAVIVVNKPAGMVVHPGHGNYSGTLVNGLIHHIENLPTNSNER---PG 146
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A ++ F D+T+
Sbjct: 147 LVHRIDKDTSGLLVVAKTEFAMAHLSKQFFDRTT 180
>gi|406884880|gb|EKD32204.1| hypothetical protein ACD_77C00153G0003, partial [uncultured
bacterium]
Length = 318
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 29 LPWKE-------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
LP+K ++P LE+ +ED DL+ +NKP+GL V PG T++ L +
Sbjct: 88 LPYKRRGFEVGPENIP--LEIVFEDKDLLVINKPAGLVVHPGHGHFSGTLVNALAFHLGL 145
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
++ + VHR+ + TSG+LL AK ++ +A F D T
Sbjct: 146 SQGEDATDERMGILVHRIDKNTSGLLLVAKNDESQLFLAKQFFDHT 191
>gi|340362364|ref|ZP_08684753.1| RNA pseudouridine synthase [Neisseria macacae ATCC 33926]
gi|339887589|gb|EGQ77134.1| RNA pseudouridine synthase [Neisseria macacae ATCC 33926]
Length = 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + DD LI ++KP L V+P G F + T+L +L+ R Q +++
Sbjct: 88 EPVIPFEEKILHIDDHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVADIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
PVHRL + T+G++L + + F +K+
Sbjct: 146 --PVHRLDKDTAGVMLLSHNPATRRDYQTMFQEKS 178
>gi|433677831|ref|ZP_20509763.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. translucens DSM 18974]
gi|430817051|emb|CCP40193.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. translucens DSM 18974]
Length = 335
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 23 ELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
E H LP D+P LEV YEDD +I LNKP+GL V PG T++ L +R
Sbjct: 82 ETQTHALPE---DIP--LEVLYEDDQVIVLNKPAGLVVHPGAGNPSGTLVNALLYR---- 132
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
SL+S + VHRL + TSG ++ A+T A T + A + +
Sbjct: 133 DPSLASLPRAGI-VHRLDKDTSGAMVVARTLPAHTSLVAQLSAR 175
>gi|419797962|ref|ZP_14323411.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
gi|385696657|gb|EIG27129.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
Length = 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + DD LI ++KP L V+P G F + T+L +L+ R Q +++
Sbjct: 88 EPVIPFEEKILHIDDHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVADIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
PVHRL + T+G++L + + F +K+
Sbjct: 146 --PVHRLDKDTAGVMLLSHNPATRRDYQTMFQEKS 178
>gi|226952693|ref|ZP_03823157.1| 23S RNA-specific pseudouridylate synthase [Acinetobacter sp. ATCC
27244]
gi|226836561|gb|EEH68944.1| 23S RNA-specific pseudouridylate synthase [Acinetobacter sp. ATCC
27244]
Length = 302
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A + + Y+R E VP+ ++ +ED+ L+ ++KP L + P G + Q T+L +L+ +
Sbjct: 72 ANTHIFYYRFLAHEIHVPFEHQILFEDEHLLVVDKPHFLTMSPTGQYVQETLLVRLKKQT 131
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P+HRL R T+G++L K A+ FA++
Sbjct: 132 GYKELT---------PIHRLDRETAGVVLFCKKASARGIYQQLFAER 169
>gi|408401446|ref|YP_006859409.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|407967674|dbj|BAM60912.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
Length = 297
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L ++ D+P L + YED+ L +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYQAQDIP--LNIIYEDEALAIINKPQGMVVHPSAGHPSGTMVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ +GTSG+L+ AKT A +AA K S+
Sbjct: 122 -VVRPGIVHRIDKGTSGLLMVAKTDEAHQALAAELKAKKSL 161
>gi|313204538|ref|YP_004043195.1| ribosomal large subunit pseudouridine synthase d [Paludibacter
propionicigenes WB4]
gi|312443854|gb|ADQ80210.1| ribosomal large subunit pseudouridine synthase D [Paludibacter
propionicigenes WB4]
Length = 356
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P + + YEDDD+I +NK L V PG T+L + W K + S
Sbjct: 101 DIP--INIVYEDDDIILVNKQPNLVVHPGFGNFDGTLLNAIAWHL-KDHPEFDANDSRIG 157
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG++L AKT+ AK + F +KT+
Sbjct: 158 LVHRIDKDTSGLILIAKTEEAKAHLGKQFFNKTT 191
>gi|170744872|ref|YP_001773527.1| RluA family pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168199146|gb|ACA21093.1| pseudouridine synthase, RluA family [Methylobacterium sp. 4-46]
Length = 336
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 20 AGSELVYHRLPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
AG + V +P P P L + YEDDDLI ++KP+GL V P T++ L
Sbjct: 59 AGGQRVAVAVPQALPATPAAQARDLAIVYEDDDLIVIDKPAGLVVHPAPGHPDGTLVNAL 118
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
S + P VHRL + TSG+L+ AK LA ++ FAD
Sbjct: 119 IAHCGASLSGIGG-VRRPGIVHRLDKDTSGLLVVAKNDLAHAGLSLQFAD 167
>gi|224533917|ref|ZP_03674502.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi CA-11.2a]
gi|224512920|gb|EEF83286.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi CA-11.2a]
Length = 251
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 9 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 68
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 69 DKDTSGVLICAKNISTLRFLAQQFKDKRT 97
>gi|167971859|ref|ZP_02554136.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 6 str. ATCC 27818]
gi|168282520|ref|ZP_02690187.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 14 str. ATCC 33697]
gi|168308674|ref|ZP_02691349.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|170762382|ref|YP_001752395.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|168827959|gb|ACA33221.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|171902645|gb|EDT48934.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|182675832|gb|EDT87737.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 14 str. ATCC 33697]
gi|186700803|gb|EDU19085.1| pseudouridylate synthase, 23S RNA-specific [Ureaplasma parvum
serovar 6 str. ATCC 27818]
Length = 292
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
Y LE+ +ED DL+ +NKPSG+ V P +Q T+ L++ + ++ H
Sbjct: 70 YSLEIIFEDQDLLIVNKPSGMLVHPTSFHEQNTLANALKYYLKTDNFYIT---------H 120
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
RL + TSG+++ K ++A + F KT
Sbjct: 121 RLDKNTSGLIIICKNQIALNSLQQQFMQKT 150
>gi|13357873|ref|NP_078147.1| pseudouridine synthase [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|11279832|pir||H82907 pseudouridine synthase (uracil hydrolase) UU313 [imported] -
Ureaplasma urealyticum
gi|6899289|gb|AAF30722.1|AE002128_10 pseudouridine synthase (uracil hydrolase) [Ureaplasma parvum
serovar 3 str. ATCC 700970]
Length = 299
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
Y LE+ +ED DL+ +NKPSG+ V P +Q T+ L++ + ++ H
Sbjct: 77 YSLEIIFEDQDLLIVNKPSGMLVHPTSFHEQNTLANALKYYLKTDNFYIT---------H 127
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
RL + TSG+++ K ++A + F KT
Sbjct: 128 RLDKNTSGLIIICKNQIALNSLQQQFMQKT 157
>gi|23006096|ref|ZP_00048580.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 279
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V +ED+DLI ++KP+GL V P + T++ +L S + P VHRL
Sbjct: 76 LTVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGASLSGIGG-VRRPGIVHRL 134
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+L+ AK LA ++A FAD
Sbjct: 135 DKDTSGLLVVAKNDLAHQGLSAQFAD 160
>gi|115375226|ref|ZP_01462492.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|310818943|ref|YP_003951301.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|115367788|gb|EAU66757.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|309392015|gb|ADO69474.1| Pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
Length = 345
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP+ P L + Y+DD L+ L+KP+GL + P +Q+ T++ L+ R ++ +
Sbjct: 89 EPETPTELPIVYQDDWLLVLDKPAGLPIHPTARYQKGTLVSLLRERFGERFAE------- 141
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P HRL R TSG+++C +T A + F +
Sbjct: 142 --PAHRLDRETSGLVVCGRTTEACRVLGRLFLSR 173
>gi|441516553|ref|ZP_20998301.1| putative pseudouridine synthase [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441456606|dbj|GAC56262.1| putative pseudouridine synthase [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 339
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
Y LP +EP +P E+ Y DDDL+ ++KP L PGG + + + L +L+ R +
Sbjct: 75 YRELPAEEP-IPVTEEILYRDDDLVVVDKPHFLSTTPGGRYLRESALVRLRIRLDNPDLT 133
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P+HRL R T+G+++ + + + FA +
Sbjct: 134 ---------PIHRLDRATAGLVMFSARPQTRGAYQSLFAQR 165
>gi|268594485|ref|ZP_06128652.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae 35/02]
gi|385335358|ref|YP_005889305.1| hypothetical protein NGTW08_0470 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|268547874|gb|EEZ43292.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae 35/02]
gi|317163901|gb|ADV07442.1| hypothetical protein NGTW08_0470 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 307
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLHPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PIHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|358011935|ref|ZP_09143745.1| putative pseudouridylate synthase [Acinetobacter sp. P8-3-8]
Length = 303
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
++P Q + + Y+R E VP+ + +E++DL+ ++KP L + P G + Q T+L
Sbjct: 69 ASPFQ-QNTHIYYYRFLAHEIHVPFEENILFENNDLMVVDKPHFLTISPTGQYVQETLLV 127
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L + + + L+ P+HRL R T+GI+L +K + FA++
Sbjct: 128 RL--KKTTNNPDLT-------PIHRLDRETAGIVLISKQPATRGLYQQMFAER 171
>gi|240013751|ref|ZP_04720664.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae DGI18]
gi|240120819|ref|ZP_04733781.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae PID24-1]
Length = 307
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLHPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PIHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|392405476|ref|YP_006442088.1| ribosomal large subunit pseudouridine synthase D [Turneriella parva
DSM 21527]
gi|390613430|gb|AFM14582.1| ribosomal large subunit pseudouridine synthase D [Turneriella parva
DSM 21527]
Length = 328
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
V YED+ L ++KP+G+ V PG T++ L Q L+ A P VHRL R
Sbjct: 92 VLYEDEYLAIVHKPAGMTVHPGAATGNDTLVHAL----VGQIKKLAPHAERPGIVHRLDR 147
Query: 102 GTSGILLCAKTKLAKTCIAAYFADK 126
T G+++ AKT A+ +A FAD+
Sbjct: 148 ETEGLMVIAKTDKARAALAGLFADR 172
>gi|375084575|ref|ZP_09731438.1| RluA family pseudouridine synthase [Megamonas funiformis YIT 11815]
gi|374568023|gb|EHR39218.1| RluA family pseudouridine synthase [Megamonas funiformis YIT 11815]
Length = 304
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
+ K ++P L++ YED+D+I +NK G+ V P T++ L + + S ++
Sbjct: 69 IEVKPENIP--LDILYEDNDIIVINKARGMVVHPAAGVYSGTLVNALLYHCHDELSGING 126
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ P VHRL + TSG+++ AK A +A KT++
Sbjct: 127 KIR-PGIVHRLDKDTSGVMVVAKNDFAHNDLALQIGSKTAI 166
>gi|254493346|ref|ZP_05106517.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae 1291]
gi|226512386|gb|EEH61731.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae 1291]
Length = 307
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLHPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PIHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|381209825|ref|ZP_09916896.1| hypothetical protein LGrbi_07866 [Lentibacillus sp. Grbi]
Length = 302
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED DL+ +NKP G+ V P Q T++ L + S SL + P VHR+
Sbjct: 79 LSIIYEDSDLMVINKPKGMVVHPSAGHQHGTLVNALLYHCD--SLSLVNGEERPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+L+ AK T +A A K
Sbjct: 137 DKDTSGLLVVAKNDQTHTILAEQLAAK 163
>gi|296133340|ref|YP_003640587.1| RluA family pseudouridine synthase [Thermincola potens JR]
gi|296031918|gb|ADG82686.1| pseudouridine synthase, RluA family [Thermincola potens JR]
Length = 321
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 22 SELVYHRLPWKEP----DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
ELV +P+ E P LE+ YED D+I +NKP G+ V P T++ L W
Sbjct: 76 GELVRVEIPYTEELEVSAEPIPLEILYEDRDVIVINKPQGMVVHPAPGNYSGTLVNALLW 135
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
S + P VHRL + TSG+++ AK +A D+T
Sbjct: 136 HCKDLSG--INGVMRPGIVHRLDKDTSGVIMAAKNDETHASLAKQIKDRT 183
>gi|408356929|ref|YP_006845460.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
gi|407727700|dbj|BAM47698.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
Length = 304
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP G+ V P T++ L +KQ ++++ + P VHR+
Sbjct: 80 LDIIYEDDDILIVNKPKGMVVHPSVGHHSGTLVNAL-LHHTKQLTTINGE-DRPGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
R TSG+L+ AKT A +A D+ +
Sbjct: 138 DRDTSGLLIIAKTDQAYESLAQQLKDREA 166
>gi|323702053|ref|ZP_08113721.1| pseudouridine synthase, RluA family [Desulfotomaculum nigrificans
DSM 574]
gi|333923444|ref|YP_004497024.1| RluA family pseudouridine synthase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532935|gb|EGB22806.1| pseudouridine synthase, RluA family [Desulfotomaculum nigrificans
DSM 574]
gi|333749005|gb|AEF94112.1| pseudouridine synthase, RluA family [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 307
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L+++YED+D+I +NKP G+ V P T++ L + S + P V
Sbjct: 77 PIPLDIYYEDNDVIVVNKPRGMVVHPAEGNTSGTLVNALLYHCRDLSG--INGVLRPGIV 134
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
HRL + TSG+++ AK LA +A D+T
Sbjct: 135 HRLDKDTSGLIMVAKNDLAHNSLAQQLKDRT 165
>gi|422422957|ref|ZP_16499910.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria seeligeri FSL S4-171]
gi|313636721|gb|EFS02383.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria seeligeri FSL S4-171]
Length = 294
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
Y LEV YEDD L+ +NKP G++ P ++ T +Q+ + ++Q ++ + VH
Sbjct: 81 YDLEVIYEDDFLLVVNKPVGMKTHPNDSYETDTCANAVQYYLEQ-----TNQDANALAVH 135
Query: 98 RLGRGTSGILLCAKTKLA 115
RL + TSG++L AK KLA
Sbjct: 136 RLDQTTSGLVLFAKNKLA 153
>gi|319406711|emb|CBI80344.1| ribosomal large subunit pseudouridine synthase D [Bartonella sp.
1-1C]
Length = 333
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +ED+ +I +NKP+GL V PG T++ L + S + P VHRL
Sbjct: 80 LDILFEDNHIIVINKPAGLVVHPGNGNWTGTLVNGLIYHCRDSLSGIGG-IKRPGIVHRL 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD--KTSVVD 131
+ TSG+++ AK+ A + A FAD +TS +D
Sbjct: 139 DKDTSGVMVIAKSDFAHRNLNAQFADHGRTSPLD 172
>gi|115522842|ref|YP_779753.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
BisA53]
gi|115516789|gb|ABJ04773.1| ribosomal large subunit pseudouridine synthase D [Rhodopseudomonas
palustris BisA53]
Length = 327
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L++ +EDDD+I ++KP GL V P + T++ L S + P V
Sbjct: 76 PIALDIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VRRPGIV 134
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
HRL + T+G+++ AK A ++A FAD
Sbjct: 135 HRLDKDTTGLMVAAKNDRAHQSLSAQFAD 163
>gi|332981610|ref|YP_004463051.1| ribosomal large subunit pseudouridine synthase D [Mahella
australiensis 50-1 BON]
gi|332699288|gb|AEE96229.1| ribosomal large subunit pseudouridine synthase D [Mahella
australiensis 50-1 BON]
Length = 304
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED+D+I +NKP G+ V P T++ L K S ++ + P
Sbjct: 77 DIP--LNILYEDEDIIVINKPQGMVVHPAAGNYSATLVNAL-LAHCKDLSGINGEIR-PG 132
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AK +A +A +KT++
Sbjct: 133 IVHRIDKDTSGVLVVAKNDMAHVALAQQIKEKTAI 167
>gi|225076837|ref|ZP_03720036.1| hypothetical protein NEIFLAOT_01888 [Neisseria flavescens
NRL30031/H210]
gi|224951823|gb|EEG33032.1| hypothetical protein NEIFLAOT_01888 [Neisseria flavescens
NRL30031/H210]
Length = 307
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKTMFYYRETSRESEPRIPFKEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PIHRLDKDTAGVMLLSLNPATRRDYQTMFQEKT 178
>gi|444918132|ref|ZP_21238211.1| ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
gi|444710246|gb|ELW51233.1| ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
Length = 331
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EPD P + V +EDD L+ L+KP+GL + P + + T++ L+ R S+
Sbjct: 76 EPDTPTEVPVVFEDDWLLVLDKPAGLPLHPTARYHKGTLVSLLRERLGHASAE------- 128
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P HRL R TSG+++C +T A + F +
Sbjct: 129 --PAHRLDRETSGLVVCGRTTEACRVLGRLFISR 160
>gi|116751075|ref|YP_847762.1| RluA family pseudouridine synthase [Syntrophobacter fumaroxidans
MPOB]
gi|116700139|gb|ABK19327.1| ribosomal large subunit pseudouridine synthase D [Syntrophobacter
fumaroxidans MPOB]
Length = 344
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P LE+ +EDDD++ LNK G+ V PG ++ T++ L S+ +S + + P V
Sbjct: 84 PMPLEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSRLASRGAPR--RPGIV 141
Query: 97 HRLGRGTSGILLCAKTKLA 115
HRL RGTSG L+ AK++ A
Sbjct: 142 HRLDRGTSGALMVAKSERA 160
>gi|329114084|ref|ZP_08242848.1| Ribosomal large subunit pseudouridine synthase D [Acetobacter
pomorum DM001]
gi|326696623|gb|EGE48300.1| Ribosomal large subunit pseudouridine synthase D [Acetobacter
pomorum DM001]
Length = 337
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 29 LPWKEPDVP----YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
+P P VP V YEDDDLI L+KP+GL V P + T++ L +
Sbjct: 81 IPPAAPAVPQGEDISFTVLYEDDDLIVLDKPAGLVVHPAPGNETGTLVNGLIAHCGESLK 140
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + P VHRL + TSG+++ AKT++A ++ FA +
Sbjct: 141 GIGGE-RRPGIVHRLDKDTSGVMVAAKTEMAHQALSEDFAAR 181
>gi|226322067|ref|ZP_03797592.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi Bol26]
gi|3915840|sp|P70870.2|RLUD_BORBU RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|226232657|gb|EEH31411.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi Bol26]
Length = 326
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKRT 172
>gi|366053143|ref|ZP_09450865.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
suebicus KCTC 3549]
Length = 305
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + S+++ + P VHR+
Sbjct: 82 LDIVYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNALLYHSP--LSTINGEFR-PGIVHRI 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A +AA +KT+
Sbjct: 139 DKDTSGLLMVAKNDQAHRFLAAQLKNKTN 167
>gi|344304981|gb|EGW35213.1| DRAP deaminase and pseudouridylate synthase [Spathaspora
passalidarum NRRL Y-27907]
Length = 416
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 18 QGAGSELVYHRLPWKEPDVPYLLE-----VFYEDDDLIALNKPSGLQVLPGGLFQQRTVL 72
Q G +++YH+ EP VP++ E + Y+D DL+ +NKP+G+ G + +V+
Sbjct: 82 QVDGKDVIYHQKHKHEPSVPWVHESIGIAIIYQDSDLVVVNKPAGIPTHATGSYMYNSVV 141
Query: 73 KQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118
+ L+ + S P HRL + TSG+L+ AK+K A TC
Sbjct: 142 EILKEQLGTDSI---------WPCHRLDKVTSGVLILAKSKEA-TC 177
>gi|291533845|emb|CBL06958.1| ribosomal large subunit pseudouridine synthase D [Megamonas
hypermegale ART12/1]
Length = 304
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
+ K ++P L++ YED+D+I +NK G+ V P T++ L + + S ++
Sbjct: 69 IEVKPENIP--LDILYEDNDIIVINKARGMVVHPAAGVYSGTLVNALLYHCHDELSGING 126
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ P VHRL + TSG+++ AK A +A KT++
Sbjct: 127 KIR-PGIVHRLDKDTSGVMVVAKNDFAHNDLALQIGSKTAI 166
>gi|355677867|ref|ZP_09060634.1| hypothetical protein HMPREF9469_03671 [Clostridium citroniae
WAL-17108]
gi|354812953|gb|EHE97567.1| hypothetical protein HMPREF9469_03671 [Clostridium citroniae
WAL-17108]
Length = 303
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED D+I +NKP G+ V P T++ L + Q S ++ P VHR+
Sbjct: 79 LDILYEDQDIILINKPKGMVVHPAAGHYSHTLVNGLMYHCKDQLSGING-VMRPGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
T+G+L+ K +A IAA + +
Sbjct: 138 DMDTTGVLIACKNDMAHNSIAAQLKEHS 165
>gi|422848774|ref|ZP_16895450.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK115]
gi|325689795|gb|EGD31799.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK115]
Length = 298
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 22 SELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
+++Y+ LP E D+P LE+ Y+D+D+ +NKP G+ V P T++ L
Sbjct: 54 GDIIYYELPEPEVVEYVPEDIP--LEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNAL 111
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ K S ++ P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 112 MYHI-KDLSGING-VLRPGIVHRIDKDTSGLLMIAKNDQAHVALADELKDKKSL 163
>gi|357060716|ref|ZP_09121481.1| hypothetical protein HMPREF9332_01038 [Alloprevotella rava F0323]
gi|355375709|gb|EHG22991.1| hypothetical protein HMPREF9332_01038 [Alloprevotella rava F0323]
Length = 367
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L++ YED +L+ +NKP+GL V PG T++ + W ++ +
Sbjct: 112 EPEDIP--LDIIYEDSELMVVNKPAGLVVHPGWGNYTGTLVNAIGWHLRDDANYDPNDPG 169
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 170 VGL-VHRIDKDTSGLLVVAKTPDAKTKLGLQFFNKTT 205
>gi|225549251|ref|ZP_03770224.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi 94a]
gi|225370109|gb|EEG99549.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi 94a]
Length = 326
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKRT 172
>gi|221217384|ref|ZP_03588855.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia burgdorferi 72a]
gi|225549717|ref|ZP_03770682.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi 118a]
gi|221192662|gb|EEE18878.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia burgdorferi 72a]
gi|225369677|gb|EEG99125.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi 118a]
Length = 326
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKRT 172
>gi|365897522|ref|ZP_09435521.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3843]
gi|365421721|emb|CCE08063.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3843]
Length = 341
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED D+I ++KP+GL V P + T++ L S + P VHRL
Sbjct: 93 LQIVYEDADIIVIDKPAGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VKRPGIVHRL 151
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+++ AK +A ++A FAD
Sbjct: 152 DKDTSGLMVVAKNDMAHQSLSAQFAD 177
>gi|422854169|ref|ZP_16900833.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK160]
gi|325696405|gb|EGD38295.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK160]
Length = 298
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 22 SELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
+++Y+ LP E D+P LE+ Y+D+D+ +NKP G+ V P T++ L
Sbjct: 54 GDIIYYELPEPEVVEYVPEDIP--LEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNAL 111
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ K S ++ P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 112 MYHI-KDLSGING-VLRPGIVHRIDKDTSGLLMIAKNDQAHVALADELKDKKSL 163
>gi|289435585|ref|YP_003465457.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171829|emb|CBH28375.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 289
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
Y LEV YEDD L+ +NKP G++ P ++ T +Q+ + ++Q ++ + VH
Sbjct: 76 YDLEVIYEDDFLLVVNKPVGMKTHPNDSYETDTCANAVQYYLEQ-----TNQDANALAVH 130
Query: 98 RLGRGTSGILLCAKTKLA 115
RL + TSG++L AK KLA
Sbjct: 131 RLDQTTSGLVLFAKNKLA 148
>gi|157363528|ref|YP_001470295.1| RluA family pseudouridine synthase [Thermotoga lettingae TMO]
gi|157314132|gb|ABV33231.1| pseudouridine synthase, RluA family [Thermotoga lettingae TMO]
Length = 294
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 22 SELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
++L +R P +P L++ YEDD+L+ LNK +G+ + P + T+++ L + +K
Sbjct: 68 ADLAVYRQKKDLPSIPLKLDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQGLHFYGAK 127
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ P VHRL R TSG+L+ AK ++ F ++
Sbjct: 128 KGFK-------PHLVHRLDRDTSGVLVIAKNVKTARTLSHMFRNR 165
>gi|365882282|ref|ZP_09421535.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 375]
gi|365289416|emb|CCD94066.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 375]
Length = 326
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDD+I ++KP+GL V P + T++ L S + P VHRL
Sbjct: 78 LTIVYEDDDIIVIDKPAGLVVHPAAGHESGTLVNALIAHCGASLSGIGG-VKRPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 137 DKDTTGLMVVAKNDHAHASLSAQFAD 162
>gi|195941758|ref|ZP_03087140.1| hypothetical protein Bbur8_02614 [Borrelia burgdorferi 80a]
Length = 336
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 94 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 154 DKDTSGVLICAKNISTLRFLAQQFKDKRT 182
>gi|429737874|ref|ZP_19271714.1| pseudouridine synthase, RluA family [Prevotella saccharolytica
F0055]
gi|429161623|gb|EKY04006.1| pseudouridine synthase, RluA family [Prevotella saccharolytica
F0055]
Length = 347
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED++L+ ++KP+G+ V PG T++ + W K S +
Sbjct: 96 DIP--LDIVYEDNELLVIDKPAGMVVHPGAGNFHGTLINAVAWHL-KDLPSFDANDPEVG 152
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AK + F +KT+
Sbjct: 153 LVHRIDKDTSGLLVVAKTAEAKRKLGLQFFNKTT 186
>gi|261879908|ref|ZP_06006335.1| ribosomal large subunit pseudouridine synthase D [Prevotella
bergensis DSM 17361]
gi|270333420|gb|EFA44206.1| ribosomal large subunit pseudouridine synthase D [Prevotella
bergensis DSM 17361]
Length = 367
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED DL+ +NK +G+ V PG T++ + W + + +
Sbjct: 109 DIP--LDIVYEDRDLMVVNKKAGMVVHPGAGNFNGTLINAVAWHL-RDLDTFDPNDPNVG 165
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 166 LVHRIDKDTSGLLVVAKTADAKTALGKQFYNKTT 199
>gi|223889096|ref|ZP_03623685.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia burgdorferi 64b]
gi|223885345|gb|EEF56446.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia burgdorferi 64b]
Length = 322
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKRT 172
>gi|76787790|ref|YP_330006.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae A909]
gi|77408235|ref|ZP_00784979.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae COH1]
gi|77412105|ref|ZP_00788430.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae CJB111]
gi|406709758|ref|YP_006764484.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
gi|421148189|ref|ZP_15607855.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GB00112]
gi|421531897|ref|ZP_15978273.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae STIR-CD-17]
gi|424049180|ref|ZP_17786731.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae ZQ0910]
gi|76562847|gb|ABA45431.1| ribosomal large subunit pseudouridine synthase, RluA family
[Streptococcus agalactiae A909]
gi|77161861|gb|EAO72847.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae CJB111]
gi|77173176|gb|EAO76301.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae COH1]
gi|389649380|gb|EIM70862.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae ZQ0910]
gi|401685165|gb|EJS81179.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GB00112]
gi|403642920|gb|EJZ03723.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae STIR-CD-17]
gi|406650643|gb|AFS46044.1| ribosomal large subunit pseudouridine synthase A [Streptococcus
agalactiae GD201008-001]
Length = 296
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L ++ ++P L++ Y+DDD+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LDYQAENIP--LDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKNDRAHQVLAEELKDKKSL 161
>gi|434381666|ref|YP_006703449.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli WesB]
gi|404430315|emb|CCG56361.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli WesB]
Length = 330
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G E+ Y+ KEP+V +E+ Y+D DLI +NKP+ L V+P G + T+ +Q R
Sbjct: 76 GDEISYYFKDMKEPEVNKDIEIIYDDGDLIIVNKPANLPVIPSGKYYYNTLHTIMQERL- 134
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
H ++R+ R TSG ++ ++ L + A A
Sbjct: 135 ---------GCHLNMINRIDRETSGCVILSRGSLVASKFCAMLA 169
>gi|225552312|ref|ZP_03773252.1| ribosomal large subunit pseudouridine synthase D [Borrelia sp. SV1]
gi|225371310|gb|EEH00740.1| ribosomal large subunit pseudouridine synthase D [Borrelia sp. SV1]
Length = 326
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
+ YED ++I LNKP G+ PG TV+ L + + + + P VHRL +
Sbjct: 86 IIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRLDK 145
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKTS 128
TSG+L+CAK +A F DK +
Sbjct: 146 DTSGVLICAKNISTLRFLAQQFKDKRT 172
>gi|315304428|ref|ZP_07874717.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria ivanovii FSL F6-596]
gi|313627200|gb|EFR96044.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria ivanovii FSL F6-596]
Length = 289
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
Y LEV YEDD L+ +NKP G++ P ++ T +Q+ + ++Q ++ + VH
Sbjct: 76 YDLEVIYEDDFLLVVNKPVGMKTHPNDSYETDTCANAVQYYLEQ-----TNQDANALAVH 130
Query: 98 RLGRGTSGILLCAKTKLA 115
RL + TSG++L AK KLA
Sbjct: 131 RLDQTTSGLVLFAKNKLA 148
>gi|406672928|ref|ZP_11080153.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
gi|423316211|ref|ZP_17294116.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
gi|405584107|gb|EKB58029.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
gi|405587472|gb|EKB61200.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
Length = 352
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YEDDDLI ++KP+G+ V PG T++ L + Q + L +
Sbjct: 104 DIP--LTIVYEDDDLIVVDKPAGMVVHPGFGNWDGTLVNALAFHF--QKNGLKTDLDRVG 159
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK + A + +A F D+ +
Sbjct: 160 LVHRIDKDTSGLLVVAKNEYALSHLAKQFYDRKT 193
>gi|343127342|ref|YP_004777273.1| RluA family pseudouridine synthase [Borrelia bissettii DN127]
gi|342222030|gb|AEL18208.1| pseudouridine synthase, RluA family protein [Borrelia bissettii
DN127]
Length = 326
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + P VHRL
Sbjct: 84 ISIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKIDFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKMT 172
>gi|334141362|ref|YP_004534568.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. PP1Y]
gi|333939392|emb|CCA92750.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. PP1Y]
Length = 318
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V +ED+ LI ++KP+GL V P T++ L Q S + A P
Sbjct: 83 DIP--LNVVFEDEYLIVIDKPAGLVVHPAAGNLDGTLVNALLHHCRGQLSGIGGVAR-PG 139
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AKT A +AA FAD +
Sbjct: 140 IVHRIDKDTSGLLVVAKTDRAHEGLAAQFADHS 172
>gi|325268629|ref|ZP_08135259.1| ribosomal large subunit pseudouridine synthase D [Prevotella
multiformis DSM 16608]
gi|324989157|gb|EGC21110.1| ribosomal large subunit pseudouridine synthase D [Prevotella
multiformis DSM 16608]
Length = 364
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED L+ +NKP+GL V PG T++ + W + +
Sbjct: 108 DIP--LDIVYEDTVLMVINKPAGLVVHPGAGNFHGTLINAVAWHL-RDMPAFDPNDPEVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLVVAKTPDAKTALGKQFFNKTT 198
>gi|257416242|ref|ZP_05593236.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
gi|257158070|gb|EEU88030.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
Length = 301
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P T++
Sbjct: 55 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPNGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK+ A +A +KTS+
Sbjct: 112 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKSDQAHESLAKQLKEKTSL 165
>gi|224370646|ref|YP_002604810.1| protein TruC [Desulfobacterium autotrophicum HRM2]
gi|223693363|gb|ACN16646.1| TruC [Desulfobacterium autotrophicum HRM2]
Length = 260
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P LE+ Y+D+DL+A+NKP GL V RT L + R + Q +Q H PV
Sbjct: 10 PGTLEILYQDEDLVAVNKPPGLLV-------HRTALATHETRFALQMVRDQTQG-HVFPV 61
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYF 123
HRL R T G+LL A+ + T ++ F
Sbjct: 62 HRLDRPTQGVLLFARNRNMATRMSHLF 88
>gi|410594777|ref|YP_006951504.1| RNA pseudouridine synthase ylyB [Streptococcus agalactiae SA20-06]
gi|410518416|gb|AFV72560.1| RNA pseudouridine synthase ylyB [Streptococcus agalactiae SA20-06]
Length = 296
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L ++ ++P L++ Y+DDD+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LDYQAENIP--LDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKNDRAHQVLAEELKDKKSL 161
>gi|77406381|ref|ZP_00783442.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
gi|77175005|gb|EAO77813.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
Length = 296
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L ++ ++P L++ Y+DDD+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LDYQAENIP--LDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKNDRAHQVLAEELKDKKSL 161
>gi|300871600|ref|YP_003786473.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli 95/1000]
gi|300689301|gb|ADK31972.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli 95/1000]
Length = 330
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G E+ Y+ KEP+V +E+ Y+D DLI +NKP+ L V+P G + T+ +Q R
Sbjct: 76 GDEISYYFKDMKEPEVNKDIEIIYDDGDLIIVNKPANLPVIPSGKYYYNTLHTIMQERL- 134
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
H ++R+ R TSG ++ ++ L + A A
Sbjct: 135 ---------GCHLNMINRIDRETSGCVILSRGSLVASKFCAMLA 169
>gi|257082401|ref|ZP_05576762.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
gi|256990431|gb|EEU77733.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
Length = 301
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P + T++
Sbjct: 55 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 112 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 165
>gi|127513571|ref|YP_001094768.1| pseudouridylate synthase [Shewanella loihica PV-4]
gi|126638866|gb|ABO24509.1| tRNA pseudouridine synthase C [Shewanella loihica PV-4]
Length = 273
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+E+ YEDDDL+A++KP+GL L + + ++ ++ A + + L H PVHRL
Sbjct: 23 IEILYEDDDLVAIHKPAGL------LVHRSYLARREKYFAMQMTRDLV--GCHVFPVHRL 74
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
R TSG+LL AK+ + FA K+
Sbjct: 75 DRPTSGVLLFAKSSEMANQLCEQFASKS 102
>gi|433449188|ref|ZP_20412052.1| 23S rRNA-specific pseudouridylate synthase [Weissella ceti NC36]
gi|429538702|gb|ELA06740.1| 23S rRNA-specific pseudouridylate synthase [Weissella ceti NC36]
Length = 304
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
L K ++P LE+ YEDDD+I +NKP G+ V P T++ L + + SS++
Sbjct: 68 ELDVKPENIP--LEIVYEDDDVIVVNKPQGMVVHPALGHPSGTLVNALMYHTT--LSSIN 123
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A ++A DK ++
Sbjct: 124 G-VIRPGIVHRIDKDTSGLLMVAKNDAAHENLSAQLKDKKNL 164
>gi|407975175|ref|ZP_11156081.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
gi|407429260|gb|EKF41938.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
Length = 349
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L++ YED DL+ +NKP+GL V P T++ L S + P V
Sbjct: 94 PIPLDILYEDADLVVVNKPAGLVVHPAPGNWTGTLVNALLHHCGDTLSGIGG-VRRPGIV 152
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
HRL R TSG+++ AKT A ++ FAD
Sbjct: 153 HRLDRDTSGVMVVAKTDRAHRALSEAFAD 181
>gi|320546984|ref|ZP_08041285.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
equinus ATCC 9812]
gi|320448386|gb|EFW89128.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
equinus ATCC 9812]
Length = 298
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YED+D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYTAENIP--LDIIYEDEDVAVVNKPQGMVVHPSVGHTSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VIRPGIVHRIDKDTSGLLMIAKNDAAHNALAAELKDKKSL 161
>gi|422419871|ref|ZP_16496826.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria seeligeri FSL N1-067]
gi|313632225|gb|EFR99288.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria seeligeri FSL N1-067]
Length = 289
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
Y LEV YEDD L+ +NKP G++ P ++ T +Q+ + ++Q ++ + VH
Sbjct: 76 YDLEVIYEDDFLLVVNKPVGMKTHPNDSYETDTCANAVQYYLEQ-----TNQDANALAVH 130
Query: 98 RLGRGTSGILLCAKTKLA 115
RL + TSG++L AK KLA
Sbjct: 131 RLDQTTSGLVLFAKNKLA 148
>gi|22537512|ref|NP_688363.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
agalactiae 2603V/R]
gi|76797703|ref|ZP_00779971.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 18RS21]
gi|77414617|ref|ZP_00790757.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 515]
gi|22534392|gb|AAN00236.1|AE014254_16 ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 2603V/R]
gi|76586927|gb|EAO63417.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 18RS21]
gi|77159330|gb|EAO70501.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae 515]
Length = 296
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L ++ ++P L++ Y+DDD+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LDYQAENIP--LDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKNDRAHQVLAEELKDKKSL 161
>gi|256619215|ref|ZP_05476061.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256853277|ref|ZP_05558647.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300860210|ref|ZP_07106297.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|428767158|ref|YP_007153269.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
gi|256598742|gb|EEU17918.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256711736|gb|EEU26774.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300849249|gb|EFK76999.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|427185331|emb|CCO72555.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
Length = 301
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P + T++
Sbjct: 55 AGDEIVV-TIPEPEALDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 112 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 165
>gi|227553528|ref|ZP_03983577.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255972642|ref|ZP_05423228.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255975694|ref|ZP_05426280.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256762651|ref|ZP_05503231.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256961775|ref|ZP_05565946.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|257079163|ref|ZP_05573524.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|257085033|ref|ZP_05579394.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257419447|ref|ZP_05596441.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257422461|ref|ZP_05599451.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294779380|ref|ZP_06744781.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|384518748|ref|YP_005706053.1| RluA family pseudouridine synthase [Enterococcus faecalis 62]
gi|397700031|ref|YP_006537819.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|430361833|ref|ZP_19426910.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|430368433|ref|ZP_19428174.1| pseudouridylate synthase [Enterococcus faecalis M7]
gi|227177333|gb|EEI58305.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255963660|gb|EET96136.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255968566|gb|EET99188.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256683902|gb|EEU23597.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256952271|gb|EEU68903.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|256987193|gb|EEU74495.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|256993063|gb|EEU80365.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257161275|gb|EEU91235.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257164285|gb|EEU94245.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294453509|gb|EFG21910.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|323480881|gb|ADX80320.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
62]
gi|397336670|gb|AFO44342.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|429512386|gb|ELA01994.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|429516189|gb|ELA05683.1| pseudouridylate synthase [Enterococcus faecalis M7]
Length = 301
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P + T++
Sbjct: 55 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 112 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 165
>gi|163790406|ref|ZP_02184837.1| Pseudouridylate synthase, 23S rRNA-specific [Carnobacterium sp.
AT7]
gi|159874310|gb|EDP68383.1| Pseudouridylate synthase, 23S rRNA-specific [Carnobacterium sp.
AT7]
Length = 301
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P +E+ Y+D+D++ +NK G+ V P Q T++ L + K S ++ P
Sbjct: 76 DIP--IEIVYQDEDVVVVNKAQGMVVHPSAGHQTGTLVNALMYHI-KDLSGINGTIR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AK A +AA DKTS+
Sbjct: 132 IVHRIDKDTSGLLMVAKNDSAHEKLAAQLKDKTSL 166
>gi|406897300|gb|EKD41296.1| Pseudouridine synthase [uncultured bacterium]
Length = 310
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDDL+ +NK GL V PG T+++ L K SS + P VHRL
Sbjct: 83 LNIIYEDDDLLVINKQRGLVVHPGAGHATGTLIQALIHYCGKLSSIGGEE--RPGIVHRL 140
Query: 100 GRGTSGILLCAKTKLAKTCIAAYF 123
+GTSG+++ AK LA ++ F
Sbjct: 141 DKGTSGLMVIAKNDLAHIGLSEQF 164
>gi|390630849|ref|ZP_10258823.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
gi|390483904|emb|CCF31171.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
Length = 305
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 28 RLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLS 87
+ K D+P L++ YEDDDL+ +NKP G+ V P + T++ L + S
Sbjct: 68 EIDLKPEDIP--LDIVYEDDDLLVVNKPQGMVVHPALGHESGTLVNALMFHT---PLSTI 122
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ P VHR+ + TSG+L+ AK A ++A DK ++
Sbjct: 123 NGVVRPGIVHRIDKDTSGLLMVAKNDKAHEALSAQLKDKKNL 164
>gi|367474965|ref|ZP_09474453.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 285]
gi|365272745|emb|CCD86921.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 285]
Length = 384
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDD+I ++KP+GL V P + T++ L S + P VHRL
Sbjct: 136 LTIVYEDDDIIVIDKPAGLVVHPAAGHESGTLVNALIAHCGASLSGIGG-VKRPGIVHRL 194
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 195 DKDTTGLMVVAKNDHAHASLSAQFAD 220
>gi|327404084|ref|YP_004344922.1| ribosomal large subunit pseudouridine synthase D [Fluviicola
taffensis DSM 16823]
gi|327319592|gb|AEA44084.1| ribosomal large subunit pseudouridine synthase D [Fluviicola
taffensis DSM 16823]
Length = 342
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P +++ YEDD++I +NKP + V PG T++ L + P
Sbjct: 93 DIP--IDIVYEDDEVIVVNKPPNMVVHPGYGNYTGTLVNALVYHFDNLPERKLDYFGRPG 150
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHRL + T+G+++ AKT+ A T +A F D+T+
Sbjct: 151 LVHRLDKHTTGVMVVAKTEDALTNLAKQFYDRTT 184
>gi|42525117|ref|NP_970497.1| pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
gi|39577328|emb|CAE81151.1| Pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
Length = 319
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 22 SELVYHRLPWKEPDV--PY--LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
++L+ +LP EP P+ L+V +ED+DLI +NKP+GL V P T++ L
Sbjct: 47 NDLIEIQLPEPEPTELQPFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIH 106
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
S + P VHRL + TSGI++ AK A + + F ++++
Sbjct: 107 HTDDLSMKFGEE--RPGIVHRLDKETSGIIVIAKNDKAHESLTSQFKERST 155
>gi|387826944|ref|YP_005806226.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi N40]
gi|312149435|gb|ADQ29506.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi N40]
Length = 326
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+L+CAK +A F DK
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDK 170
>gi|296314658|ref|ZP_06864599.1| RNA pseudouridine synthase [Neisseria polysaccharea ATCC 43768]
gi|296838567|gb|EFH22505.1| RNA pseudouridine synthase [Neisseria polysaccharea ATCC 43768]
Length = 307
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L ++ + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSQNPATRGAYQTMFQNKT 178
>gi|224532575|ref|ZP_03673198.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi WI91-23]
gi|224512518|gb|EEF82896.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi WI91-23]
Length = 326
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+L+CAK +A F DK
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDK 170
>gi|86137869|ref|ZP_01056445.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
MED193]
gi|85825461|gb|EAQ45660.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
MED193]
Length = 346
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V +EDDDLI +NKPSG+ V P T++ L + S + P VHR+
Sbjct: 85 LDVIFEDDDLIVINKPSGMVVHPAPGTPSGTLVNALLHHCGENLSGVGG-VKRPGIVHRI 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK+ A +AA F T
Sbjct: 144 DKETSGLLVVAKSDAAHQGLAAQFEKHT 171
>gi|312869892|ref|ZP_07730031.1| pseudouridine synthase, RluA family [Lactobacillus oris PB013-T2-3]
gi|417884854|ref|ZP_12529015.1| pseudouridine synthase, RluA family [Lactobacillus oris F0423]
gi|311094477|gb|EFQ52782.1| pseudouridine synthase, RluA family [Lactobacillus oris PB013-T2-3]
gi|341596810|gb|EGS39396.1| pseudouridine synthase, RluA family [Lactobacillus oris F0423]
Length = 304
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + S+++ + P VHR+
Sbjct: 80 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHSP--LSTINGEFR-PGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK LA +AA KT+
Sbjct: 137 DKDTSGLLMVAKNDLAHRSLAAQLKAKTN 165
>gi|257090036|ref|ZP_05584397.1| pseudouridylate synthase [Enterococcus faecalis CH188]
gi|256998848|gb|EEU85368.1| pseudouridylate synthase [Enterococcus faecalis CH188]
Length = 301
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P + T++
Sbjct: 55 AGDEIVV-TIPEPEVLDMIAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 112 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 165
>gi|405377633|ref|ZP_11031573.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397325899|gb|EJJ30224.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 341
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P L++ YED+D+I ++KP+GL V PG T++ L + S +
Sbjct: 84 KGEDIP--LDILYEDEDVIVISKPAGLVVHPGPGNWTGTLVNALIYHCGDTLSGIGG-VR 140
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHRL + T+G+++ AK +A ++ FAD
Sbjct: 141 RPGIVHRLDKDTTGVMVVAKNDMAHRHLSLQFAD 174
>gi|255016964|ref|ZP_05289090.1| hypothetical protein LmonF_02463 [Listeria monocytogenes FSL
F2-515]
Length = 133
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 34 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDA 88
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVD 131
+ + VHRL + TSG++L AK KLA ++ +K+ D
Sbjct: 89 NALAVHRLDQTTSGLVLFAKNKLAIAGLSWQMENKSDSQD 128
>gi|218249610|ref|YP_002374552.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi ZS7]
gi|226321152|ref|ZP_03796693.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi 29805]
gi|218164798|gb|ACK74859.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia burgdorferi ZS7]
gi|226233444|gb|EEH32184.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi 29805]
Length = 326
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+L+CAK +A F DK
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDK 170
>gi|223939777|ref|ZP_03631648.1| pseudouridine synthase, RluA family [bacterium Ellin514]
gi|223891553|gb|EEF58043.1| pseudouridine synthase, RluA family [bacterium Ellin514]
Length = 318
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +ED DL+ LNK GL V P ++ T++ L Q S + A P
Sbjct: 80 DIP--LDIIFEDSDLLVLNKAPGLVVHPAAGHEEHTLVNALLHHCEGQLSGIGGVAR-PG 136
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL + TSG L+ AK A +A F+ +T
Sbjct: 137 IVHRLDKETSGCLVVAKNDAAHMALAEQFSGRT 169
>gi|409123029|ref|ZP_11222424.1| ribosomal large subunit pseudouridine synthase D [Gillisia sp.
CBA3202]
Length = 313
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YEDD L+ +NK +G+ V PG T++ L + ++ S + P
Sbjct: 57 DIP--LNIVYEDDSLMVINKEAGMVVHPGHGNYSGTLINALIFHIDNLPNNSSER---PG 111
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A T ++ F KTS
Sbjct: 112 LVHRIDKDTSGLLVIAKTEAAMTHLSKQFFKKTS 145
>gi|241896496|ref|ZP_04783792.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241870218|gb|EER73969.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 304
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDL+ +NKP G+ V P T++ L + + SS++ P VHR+
Sbjct: 78 LDIVYEDDDLLVVNKPQGMVVHPAAGHPNGTLVNALMYHT--ELSSING-VIRPGIVHRI 134
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AK A ++A DK ++
Sbjct: 135 DKDTSGLLMVAKNDQAHEALSADLKDKKNL 164
>gi|238927877|ref|ZP_04659637.1| pseudouridylate synthase [Selenomonas flueggei ATCC 43531]
gi|238884210|gb|EEQ47848.1| pseudouridylate synthase [Selenomonas flueggei ATCC 43531]
Length = 299
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 10/123 (8%)
Query: 12 KNSAPLQGAGSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGL 65
+ A + +G+E+V LP E D+P L++ YED D+I +NK G+ V P
Sbjct: 43 RRKANFKLSGAEMVVCTLPPAEETEICAEDIP--LDILYEDADIIVINKRRGMVVHPAAG 100
Query: 66 FQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
T++ L S S + A P VHRL + TSG+++ AK +A +A D
Sbjct: 101 VHTGTLVNALLHHCSDLSGI--NGALRPGIVHRLDKDTSGVMVAAKNDMAHHYLARQIRD 158
Query: 126 KTS 128
K +
Sbjct: 159 KEA 161
>gi|227514877|ref|ZP_03944926.1| pseudouridylate synthase [Lactobacillus fermentum ATCC 14931]
gi|227086724|gb|EEI22036.1| pseudouridylate synthase [Lactobacillus fermentum ATCC 14931]
Length = 291
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP G+ V P T++ L + A SS++ + P VHR+
Sbjct: 68 LDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTLVNALMYYAP--LSSINGELR-PGIVHRI 124
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AKT A + A +K+++
Sbjct: 125 DKDTSGLLMVAKTDRAHRSLTAQLKEKSNL 154
>gi|216264271|ref|ZP_03436263.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia burgdorferi 156a]
gi|215980744|gb|EEC21551.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia burgdorferi 156a]
Length = 326
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+L+CAK +A F DK
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDK 170
>gi|306823384|ref|ZP_07456759.1| possible pseudouridylate synthase [Bifidobacterium dentium ATCC
27679]
gi|309802642|ref|ZP_07696746.1| RNA pseudouridine synthase [Bifidobacterium dentium JCVIHMP022]
gi|304553091|gb|EFM41003.1| possible pseudouridylate synthase [Bifidobacterium dentium ATCC
27679]
gi|308220706|gb|EFO77014.1| RNA pseudouridine synthase [Bifidobacterium dentium JCVIHMP022]
Length = 264
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14 SAPLQGAGSELVY-----HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQ 68
S P + + E+V HR EP +P+ EV YEDD +I ++KP L P G++ +
Sbjct: 4 SEPDRASQEEVVLRQGRRHRYVIAEPHIPFEYEVLYEDDGIIVIDKPHFLATTPRGMWYR 63
Query: 69 RTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
T L +L+ R + VP HRL R T+G+++ + + F + +
Sbjct: 64 ETALIRLRERYGEPDI---------VPAHRLDRLTAGVVVFVRKPELRGAYQMLFQEHRT 114
Query: 129 V 129
V
Sbjct: 115 V 115
>gi|339478764|gb|ABE95222.1| Ribosomal large subunit pseudouridine synthase D [Bifidobacterium
breve UCC2003]
Length = 275
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
HR EP +P+ ++V YED+ +I ++KP L +P G++ + T L +L+ R + +
Sbjct: 19 HRYVIDEPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRETALIRLRERLGEPDIT- 77
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P HRL R T+G+L+ + + F +K +
Sbjct: 78 --------PAHRLDRMTAGVLVFVRDPACRGAYQMLFQNKQA 111
>gi|303278324|ref|XP_003058455.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459615|gb|EEH56910.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 417
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L E+ YED+ + + KP G+ + G + L +++ + S P
Sbjct: 167 DLPRL-EIAYEDNHMAVIVKPEGMPSVGDGAWNAERALPYYL----RETRRVEGALSRPR 221
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
PVHRL TSG+L+CAKT+LA T ++ FA +
Sbjct: 222 PVHRLDAATSGLLVCAKTRLAMTSLSVAFARR 253
>gi|85373063|ref|YP_457125.1| pseudouridine synthase D large subunit [Erythrobacter litoralis
HTCC2594]
gi|84786146|gb|ABC62328.1| pseudouridine synthase D large subunit [Erythrobacter litoralis
HTCC2594]
Length = 322
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V +ED+ L+ +NKP+G+ V P T++ L Q S ++ A P VHR+
Sbjct: 88 LDVVFEDEHLLVVNKPAGMVVHPAAGNPDGTLVNALLHHCRGQLSGINGVAR-PGIVHRI 146
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AKT A +AA FA+ T
Sbjct: 147 DKDTSGLLVVAKTDNAHEGLAAQFAEHT 174
>gi|398382437|ref|ZP_10540524.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
gi|397717523|gb|EJK78140.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
Length = 341
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V +EDDD+I ++KP+GL V PG T++ L S + P
Sbjct: 87 DIP--LDVLFEDDDVIVISKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|384197435|ref|YP_005583179.1| RNA pseudouridine synthase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333109353|gb|AEF26369.1| RNA pseudouridine synthase [Bifidobacterium breve ACS-071-V-Sch8b]
Length = 275
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
HR EP +P+ ++V YED+ +I ++KP L +P G++ + T L +L+ R + +
Sbjct: 19 HRYVIDEPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRETALIRLRERLGEPDIT- 77
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P HRL R T+G+L+ + + F +K +
Sbjct: 78 --------PAHRLDRMTAGVLVFVRDPACRGAYQMLFQNKQA 111
>gi|315303759|ref|ZP_07874262.1| ribosomal large subunit pseudouridine synthase D [Listeria ivanovii
FSL F6-596]
gi|313627868|gb|EFR96498.1| ribosomal large subunit pseudouridine synthase D [Listeria ivanovii
FSL F6-596]
Length = 302
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++++ED D++ +NKP G+ V P T++ L + K S ++ + P
Sbjct: 76 DIP--LDIYFEDKDMLVVNKPEGMVVHPSAGHASSTLVNALLFHC-KDLSGINGKIR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +A DKTS
Sbjct: 132 IVHRIDKDTSGLLMVAKNDHAHESLAKQLKDKTS 165
>gi|171741038|ref|ZP_02916845.1| hypothetical protein BIFDEN_00104 [Bifidobacterium dentium ATCC
27678]
gi|283455575|ref|YP_003360139.1| ribosomal large subunit pseudouridine synthase D [Bifidobacterium
dentium Bd1]
gi|171276652|gb|EDT44313.1| RNA pseudouridine synthase [Bifidobacterium dentium ATCC 27678]
gi|283102209|gb|ADB09315.1| Ribosomal large subunit pseudouridine synthase D [Bifidobacterium
dentium Bd1]
Length = 264
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14 SAPLQGAGSELVY-----HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQ 68
S P + + E+V HR EP +P+ EV YEDD +I ++KP L P G++ +
Sbjct: 4 SEPGRASQEEVVLRQERRHRYVIAEPHIPFEYEVLYEDDGIIVIDKPHFLATTPRGMWYR 63
Query: 69 RTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
T L +L+ R + VP HRL R T+G+++ + + F + +
Sbjct: 64 ETALIRLRERYGEPDI---------VPAHRLDRLTAGVVVFVRKPELRGAYQMLFQEHRT 114
Query: 129 V 129
V
Sbjct: 115 V 115
>gi|424780438|ref|ZP_18207311.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
gi|422842840|gb|EKU27287.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
Length = 301
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP G+ V P T++ L + Q S + P VHR+
Sbjct: 78 LDIIYEDEDVIVINKPQGMVVHPSPGHPDGTLVNGLLYHT--QLSEMEEGTIRPGIVHRI 135
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK + +A ++KTS
Sbjct: 136 DKDTSGLLMVAKNNQSHESLAKQLSEKTS 164
>gi|229545666|ref|ZP_04434391.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|307275817|ref|ZP_07556956.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|307291840|ref|ZP_07571711.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|422685833|ref|ZP_16744046.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|422720764|ref|ZP_16777373.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|422734158|ref|ZP_16790452.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
gi|422739157|ref|ZP_16794340.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|229309234|gb|EEN75221.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|306497106|gb|EFM66652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|306507509|gb|EFM76640.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|315029545|gb|EFT41477.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|315032018|gb|EFT43950.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|315144961|gb|EFT88977.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|315168880|gb|EFU12897.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
Length = 310
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P + T++
Sbjct: 64 AGDEIVV-TIPEPEALDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVN 120
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 121 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 174
>gi|419536489|ref|ZP_14075970.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 111-3]
gi|419540657|ref|ZP_14079891.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z163]
gi|419549014|ref|ZP_14087623.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2685]
gi|419550911|ref|ZP_14089390.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2688]
gi|419553213|ref|ZP_14091473.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2692]
gi|419554296|ref|ZP_14092440.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2698]
gi|419558219|ref|ZP_14096100.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 80352]
gi|419561083|ref|ZP_14098711.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 86119]
gi|419564301|ref|ZP_14101684.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1098]
gi|419568744|ref|ZP_14105876.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1417]
gi|419569920|ref|ZP_14106976.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 7--1]
gi|419572491|ref|ZP_14109404.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 132-6]
gi|419574881|ref|ZP_14111581.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1909]
gi|419577849|ref|ZP_14114393.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 59-2]
gi|419579268|ref|ZP_14115685.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1948]
gi|419580721|ref|ZP_14117041.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1957]
gi|419582802|ref|ZP_14118996.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1961]
gi|419585023|ref|ZP_14121086.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 202/04]
gi|419586665|ref|ZP_14122623.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 67-8]
gi|419590846|ref|ZP_14126209.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 37/05]
gi|419594888|ref|ZP_14130005.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23336]
gi|419597464|ref|ZP_14132439.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23341]
gi|419598023|ref|ZP_14132912.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23342]
gi|419602392|ref|ZP_14136971.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 151-9]
gi|419605113|ref|ZP_14139562.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9853]
gi|419606421|ref|ZP_14140787.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9860]
gi|419608035|ref|ZP_14142234.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H6]
gi|419610134|ref|ZP_14144206.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H8]
gi|419613642|ref|ZP_14147438.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H56]
gi|419616437|ref|ZP_14150085.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z156]
gi|380516423|gb|EIA42556.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z163]
gi|380518257|gb|EIA44356.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 111-3]
gi|380526757|gb|EIA52198.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2685]
gi|380529338|gb|EIA54504.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2692]
gi|380529451|gb|EIA54606.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2688]
gi|380533046|gb|EIA58006.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2698]
gi|380536357|gb|EIA60993.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 86119]
gi|380540006|gb|EIA64336.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 80352]
gi|380542908|gb|EIA67134.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1098]
gi|380545172|gb|EIA69166.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1417]
gi|380548735|gb|EIA72634.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 7--1]
gi|380550871|gb|EIA74502.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 132-6]
gi|380554546|gb|EIA78008.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1909]
gi|380556502|gb|EIA79753.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 59-2]
gi|380557837|gb|EIA81035.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1948]
gi|380560532|gb|EIA83609.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1957]
gi|380562931|gb|EIA85778.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 202/04]
gi|380564583|gb|EIA87387.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1961]
gi|380565718|gb|EIA88428.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 67-8]
gi|380569989|gb|EIA92421.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 37/05]
gi|380573564|gb|EIA95706.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23341]
gi|380574758|gb|EIA96851.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23336]
gi|380577662|gb|EIA99659.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23342]
gi|380578672|gb|EIB00503.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9853]
gi|380581382|gb|EIB03109.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 151-9]
gi|380586032|gb|EIB07349.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H6]
gi|380586940|gb|EIB08192.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9860]
gi|380590695|gb|EIB11699.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H8]
gi|380593921|gb|EIB14734.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H56]
gi|380595817|gb|EIB16541.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z156]
Length = 321
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEP-----DVPYLLEVFYEDDDLIALNKPSGLQVLPGG 64
++KNS L+ G +LV + LP E D+ + +E+ YED+DL+ LNKPS L V
Sbjct: 43 QNKNSFKLK-VGDKLVLN-LPLVEEAKPKFDIDFDIEILYEDEDLLVLNKPSNLVVHGAK 100
Query: 65 LFQQRTVLKQLQWRASKQS--SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122
+ T+ + W KQ S+L + + VHRL + TSG +L AK ++
Sbjct: 101 SVKSATL---VDWLIEKQYTLSTLGGEVRAGL-VHRLDKETSGAILIAKNNFTHQKLSEQ 156
Query: 123 FADKT 127
+DKT
Sbjct: 157 LSDKT 161
>gi|392531630|ref|ZP_10278767.1| pseudouridylate synthase [Carnobacterium maltaromaticum ATCC 35586]
gi|414083852|ref|YP_006992560.1| RluA family pseudouridine synthase [Carnobacterium maltaromaticum
LMA28]
gi|412997436|emb|CCO11245.1| pseudouridine synthase, RluA family protein [Carnobacterium
maltaromaticum LMA28]
Length = 304
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YED D++ +NKP G+ V P T++ L + K S ++ P VHR+
Sbjct: 81 LEIVYEDQDVLVVNKPQGMVVHPSVGHMTGTLVNALMYHI-KDLSGING-VVRPGIVHRI 138
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AK A +AA DKTS+
Sbjct: 139 DKDTSGLLMVAKNDQAHEKLAAQLKDKTSL 168
>gi|312903470|ref|ZP_07762650.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|422689213|ref|ZP_16747325.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
gi|310633346|gb|EFQ16629.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|315577834|gb|EFU90025.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
Length = 310
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P + T++
Sbjct: 64 AGDEIVV-TIPEPEVLDMIAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVN 120
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 121 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 174
>gi|256964973|ref|ZP_05569144.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|256955469|gb|EEU72101.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|295113102|emb|CBL31739.1| ribosomal large subunit pseudouridine synthase D [Enterococcus sp.
7L76]
Length = 301
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P T++
Sbjct: 55 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPNGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 112 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 165
>gi|420155633|ref|ZP_14662491.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
gi|394758862|gb|EJF41698.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
Length = 308
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDL+ +NKP G+ V P + +T++ L + S ++ P VHR+
Sbjct: 81 LDIVYEDDDLLVVNKPKGMVVHPAPGNRDKTLVNALLYHCGDSLSGING-VIRPGIVHRI 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK A +AA + +
Sbjct: 140 DKDTSGLLIVAKNDFAHQSLAAQIKEHS 167
>gi|365858615|ref|ZP_09398538.1| putative ribosomal large subunit pseudouridine synthase D
[Acetobacteraceae bacterium AT-5844]
gi|363713926|gb|EHL97486.1| putative ribosomal large subunit pseudouridine synthase D
[Acetobacteraceae bacterium AT-5844]
Length = 343
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V +ED LI L+KP+GL V P + T++ L A + + + + P
Sbjct: 98 DIP--LTVLFEDRQLIVLDKPAGLVVHPAPGNEDGTLVNALLAHAGDELAGIGGE-KRPG 154
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHRL + TSG+++ AKT+ A ++A FA + ++
Sbjct: 155 IVHRLDKDTSGVMVVAKTERAHQTLSATFASRENL 189
>gi|227544604|ref|ZP_03974653.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri CF48-3A]
gi|338204549|ref|YP_004650694.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
gi|227185411|gb|EEI65482.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri CF48-3A]
gi|336449789|gb|AEI58404.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
Length = 303
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD+I +NKP G+ V P T++ L + + S+++ + P
Sbjct: 77 DIP--LDIVYEDDDVIVVNKPQGMVVHPAPGHPNHTLVNALLYHSP--LSTINGEFR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK +A + A KT+
Sbjct: 132 IVHRIDKDTSGLLMVAKNDMAHRSLTAQLKAKTN 165
>gi|255280911|ref|ZP_05345466.1| ribosomal large subunit pseudouridine synthase D [Bryantella
formatexigens DSM 14469]
gi|255268359|gb|EET61564.1| pseudouridine synthase, RluA family [Marvinbryantia formatexigens
DSM 14469]
Length = 325
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDL+ +NKP G+ V PG T++ L + S ++ P
Sbjct: 97 DIP--LDILYEDDDLLVVNKPKGMVVHPGAGHYSHTLVNALMYHCRDNLSGING-VLRPG 153
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + T+G LL K + IA + +
Sbjct: 154 IVHRIDQNTTGSLLVCKNDFSHNFIAGQLKEHS 186
>gi|222086840|ref|YP_002545374.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221724288|gb|ACM27444.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 343
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V +EDDD+I ++KP+GL V PG T++ L S + P
Sbjct: 89 DIP--LDVLFEDDDVIVISKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VRRPG 145
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 146 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 176
>gi|1665844|emb|CAA70352.1| yfiI [Borrelia burgdorferi]
Length = 309
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+L+CAK +A F DK
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDK 170
>gi|453075849|ref|ZP_21978631.1| pseudouridine synthase [Rhodococcus triatomae BKS 15-14]
gi|452762154|gb|EME20451.1| pseudouridine synthase [Rhodococcus triatomae BKS 15-14]
Length = 306
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 26 YHR-LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
YHR LP +EP VP+ E+ + DDDLI ++KP L PGG + + + L +L+ R
Sbjct: 64 YHRDLPAEEP-VPFHEEILHVDDDLIVIDKPHFLPTTPGGRYLRESALVRLRLRLDNPDI 122
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+ P+HRL R T+G+++ + + + F
Sbjct: 123 T---------PIHRLDRATAGLVMFSARPATRGAYQSLF 152
>gi|424896721|ref|ZP_18320295.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180948|gb|EJC80987.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 341
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +ED+D+I ++KPSGL V PG T++ L + S + P
Sbjct: 87 DIP--LDILHEDEDVIVISKPSGLVVHPGAGNWTGTLVNALIYHCGDTLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|332877311|ref|ZP_08445059.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357044439|ref|ZP_09106090.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
gi|332684694|gb|EGJ57543.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355532689|gb|EHH02071.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
Length = 362
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ ++KP+GL V PG T++ + W K +
Sbjct: 108 DIP--LDIVYEDEDLMVVDKPAGLVVHPGCGNYTGTLVNAIAWHL-KDNPDYDPNDPTVG 164
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK AKT + F +KT+
Sbjct: 165 LVHRIDKDTSGLLVVAKNADAKTHLGKQFFNKTT 198
>gi|297624276|ref|YP_003705710.1| pseudouridine synthase [Truepera radiovictrix DSM 17093]
gi|297165456|gb|ADI15167.1| pseudouridine synthase, RluA family [Truepera radiovictrix DSM
17093]
Length = 312
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+G ELV LP P + P L++ YEDDDL A++KP G+ P ++ TV+
Sbjct: 53 SGRELVSVVLPPPRPLRVEPENTP--LDIIYEDDDLAAIDKPPGMTAHPTATVREGTVVN 110
Query: 74 QLQWRASKQSSSL---SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L R + L + P VHRL + TSG+++ AK A +A+ F +
Sbjct: 111 ALLGRMALAKEKLFDPEDEDYRPGIVHRLDKETSGVMVVAKNDAAHRELASAFKKR 166
>gi|311112905|ref|YP_003984127.1| RNA pseudouridine synthase [Rothia dentocariosa ATCC 17931]
gi|310944399|gb|ADP40693.1| RNA pseudouridine synthase [Rothia dentocariosa ATCC 17931]
Length = 365
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
V YED+ L+A++KP L V P G + +T L +L+ R K + L+ PVHRL R
Sbjct: 110 VLYEDEHLLAVDKPHYLPVTPRGAYIAQTALTKLRVR--KNNPLLT-------PVHRLDR 160
Query: 102 GTSGILLCAKTKLAKTCIAAYFADK 126
T+GILL AKT+ A+ F ++
Sbjct: 161 PTAGILLFAKTRDARGPFQTMFQNR 185
>gi|299821727|ref|ZP_07053615.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
gi|299817392|gb|EFI84628.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
Length = 302
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+++YED+DL+ +NKP G+ V P T++ L + K S ++ + P
Sbjct: 76 DIP--LDIYYEDEDLLVVNKPEGMVVHPSAGHYTGTLVNALLYHC-KDLSGINGKIR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +A+ KTS
Sbjct: 132 IVHRIDKDTSGLLMVAKNDAAHESLASQLKAKTS 165
>gi|224532212|ref|ZP_03672844.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia valaisiana VS116]
gi|224511677|gb|EEF82083.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) [Borrelia valaisiana VS116]
Length = 326
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + P VHRL
Sbjct: 84 IAIIYEDSNIIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKIDFNGEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFRDKRT 172
>gi|431807652|ref|YP_007234550.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli P43/6/78]
gi|430781011|gb|AGA66295.1| ribosomal large subunit pseudouridine synthase C [Brachyspira
pilosicoli P43/6/78]
Length = 330
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G E+ Y+ KEP+V +E+ Y+D DLI +NKP+ L V+P G + T+ +Q R
Sbjct: 76 GDEISYYFKDMKEPEVNKDIEIIYDDGDLIIVNKPANLPVIPSGKYYYNTLHTIMQERLR 135
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
H ++R+ R TSG ++ ++ L + A A
Sbjct: 136 ----------CHLNMINRIDRETSGCVILSRGSLVASKFCAMLA 169
>gi|419588372|ref|ZP_14124194.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 317/04]
gi|380570075|gb|EIA92505.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 317/04]
Length = 321
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEP-----DVPYLLEVFYEDDDLIALNKPSGLQVLPGG 64
++KNS L+ G +LV + LP E D+ + +E+ YED+DL+ LNKPS L V
Sbjct: 43 QNKNSFKLK-VGDKLVLN-LPLVEEAKPKFDIDFDIEILYEDEDLLVLNKPSNLVVHGAK 100
Query: 65 LFQQRTVLKQLQWRASKQS--SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122
+ T+ + W KQ S+L + + VHRL + TSG +L AK ++
Sbjct: 101 SVKSATL---VDWLIEKQYTLSTLGGEVRAGL-VHRLDKETSGAILIAKNNFTHQKLSEQ 156
Query: 123 FADKT 127
+DKT
Sbjct: 157 LSDKT 161
>gi|359397988|ref|ZP_09191012.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
pentaromativorans US6-1]
gi|357600406|gb|EHJ62101.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
pentaromativorans US6-1]
Length = 318
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V +ED+ LI ++KP+GL V P T++ L Q S + A P
Sbjct: 83 DIP--LNVVFEDEYLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCRGQLSGIGGVAR-PG 139
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AKT A +AA FAD +
Sbjct: 140 IVHRIDKDTSGLLVVAKTDRAHEGLAAQFADHS 172
>gi|227518911|ref|ZP_03948960.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229549858|ref|ZP_04438583.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|293383481|ref|ZP_06629394.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|293388864|ref|ZP_06633350.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|307269533|ref|ZP_07550872.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|307277912|ref|ZP_07558996.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|307289260|ref|ZP_07569216.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|312901873|ref|ZP_07761138.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|312907690|ref|ZP_07766681.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|312910308|ref|ZP_07769155.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|312951652|ref|ZP_07770547.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|384513397|ref|YP_005708490.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|422692868|ref|ZP_16750883.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|422699060|ref|ZP_16756933.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|422701912|ref|ZP_16759752.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|422704628|ref|ZP_16762438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|422706513|ref|ZP_16764211.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|422714465|ref|ZP_16771191.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|422715722|ref|ZP_16772438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|422727205|ref|ZP_16783648.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|422731593|ref|ZP_16787951.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|422869198|ref|ZP_16915718.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|424676609|ref|ZP_18113480.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|424681575|ref|ZP_18118362.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|424683765|ref|ZP_18120515.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|424686331|ref|ZP_18122999.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|424690397|ref|ZP_18126932.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|424695490|ref|ZP_18131873.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|424696771|ref|ZP_18133112.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|424699843|ref|ZP_18136054.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|424703143|ref|ZP_18139277.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|424707360|ref|ZP_18143344.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|424716980|ref|ZP_18146278.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|424720558|ref|ZP_18149659.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|424724107|ref|ZP_18153056.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|424733698|ref|ZP_18162253.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|424744003|ref|ZP_18172308.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|424750489|ref|ZP_18178553.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
gi|227073600|gb|EEI11563.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229305127|gb|EEN71123.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|291079272|gb|EFE16636.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|291081789|gb|EFE18752.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|306499969|gb|EFM69330.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|306505309|gb|EFM74495.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|306514153|gb|EFM82729.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|310626718|gb|EFQ10001.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|310630369|gb|EFQ13652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|311289581|gb|EFQ68137.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|311291066|gb|EFQ69622.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|315152327|gb|EFT96343.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|315156128|gb|EFU00145.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|315158230|gb|EFU02247.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|315162361|gb|EFU06378.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|315163874|gb|EFU07891.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|315169613|gb|EFU13630.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|315172438|gb|EFU16455.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|315576067|gb|EFU88258.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|315580642|gb|EFU92833.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|327535286|gb|AEA94120.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|329571882|gb|EGG53560.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|402350674|gb|EJU85572.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|402356621|gb|EJU91352.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|402364130|gb|EJU98573.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|402364240|gb|EJU98682.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|402367865|gb|EJV02202.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|402368185|gb|EJV02505.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|402375342|gb|EJV09329.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|402377100|gb|EJV11011.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|402384958|gb|EJV18499.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|402385148|gb|EJV18688.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|402386328|gb|EJV19834.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|402391311|gb|EJV24622.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|402393029|gb|EJV26259.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|402395918|gb|EJV28995.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|402399426|gb|EJV32298.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|402406788|gb|EJV39334.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
Length = 310
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P + T++
Sbjct: 64 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPKGTLVN 120
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 121 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 174
>gi|421542267|ref|ZP_15988377.1| pseudouridine synthase [Neisseria meningitidis NM255]
gi|402318203|gb|EJU53728.1| pseudouridine synthase [Neisseria meningitidis NM255]
Length = 307
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|424885737|ref|ZP_18309348.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393177499|gb|EJC77540.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 341
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +ED+D+I ++KPSGL V PG T++ L + S + P
Sbjct: 87 DIP--LDILHEDEDVIVISKPSGLVVHPGAGNWTGTLVNALIYHCGDTLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|254510211|ref|ZP_05122278.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium KLH11]
gi|221533922|gb|EEE36910.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium KLH11]
Length = 344
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L+V YEDDDLI +NKP+G+ V P T++ L S + P
Sbjct: 82 DIP--LDVVYEDDDLIVINKPAGMVVHPAPGSPNGTLVNALLHHCGDDLSGVGG-VKRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
VHR+ + TSG+L+ AK+ A +AA F
Sbjct: 139 IVHRIDKETSGLLVVAKSDAAHHGLAAQF 167
>gi|57167607|ref|ZP_00366747.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Campylobacter coli RM2228]
gi|305433113|ref|ZP_07402269.1| RluA family pseudouridine synthase [Campylobacter coli JV20]
gi|419541708|ref|ZP_14080846.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2548]
gi|419544211|ref|ZP_14083176.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2553]
gi|419546523|ref|ZP_14085276.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2680]
gi|419555612|ref|ZP_14093624.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 84-2]
gi|419561923|ref|ZP_14099451.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1091]
gi|419565957|ref|ZP_14103225.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1148]
gi|419573095|ref|ZP_14109906.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1891]
gi|419592545|ref|ZP_14127791.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9854]
gi|419599843|ref|ZP_14134622.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23344]
gi|57020729|gb|EAL57393.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Campylobacter coli RM2228]
gi|304443814|gb|EFM36471.1| RluA family pseudouridine synthase [Campylobacter coli JV20]
gi|380522199|gb|EIA47891.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2680]
gi|380524351|gb|EIA49963.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2548]
gi|380525533|gb|EIA51049.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2553]
gi|380535890|gb|EIA60561.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 84-2]
gi|380542564|gb|EIA66797.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1091]
gi|380547949|gb|EIA71863.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1148]
gi|380552367|gb|EIA75928.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1891]
gi|380571961|gb|EIA94308.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9854]
gi|380583821|gb|EIB05330.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23344]
Length = 321
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEP-----DVPYLLEVFYEDDDLIALNKPSGLQVLPGG 64
++KNS L+ G +LV + LP E D+ + +E+ YED+DL+ LNKPS L V
Sbjct: 43 QNKNSFKLK-VGDKLVLN-LPLVEEAKPKFDIDFDIEILYEDEDLLVLNKPSNLVVHGAK 100
Query: 65 LFQQRTVLKQLQWRASKQS--SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122
+ T+ + W KQ S+L + + VHRL + TSG +L AK ++
Sbjct: 101 SVRSATL---VDWLIEKQYTLSTLGGEVRAGL-VHRLDKETSGAILIAKNNFTHQKLSEQ 156
Query: 123 FADKT 127
+DKT
Sbjct: 157 LSDKT 161
>gi|402821994|ref|ZP_10871503.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
LH128]
gi|402264475|gb|EJU14329.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
LH128]
Length = 313
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED+ LI ++KP+GL V P T++ L Q S + A P
Sbjct: 78 DIP--LAVVYEDEHLIIVDKPAGLVVHPAAGNLDGTLVNALLHHCRGQLSGIGGVAR-PG 134
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AKT A +A FAD +
Sbjct: 135 IVHRIDKDTSGLLVVAKTDKAHEGLAVQFADHS 167
>gi|402566407|ref|YP_006615752.1| RluA family pseudouridine synthase [Burkholderia cepacia GG4]
gi|402247604|gb|AFQ48058.1| RluA family pseudouridine synthase [Burkholderia cepacia GG4]
Length = 401
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 2 TLIEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGL 58
L++ K + PL GA ELV LP + P+ P L+V YEDD L+ +NKP+GL
Sbjct: 96 VLVDGAPAKIRQPVPL-GARIELVPDLLPEQLAFTPE-PVPLDVIYEDDALVVINKPAGL 153
Query: 59 QVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118
V P T+L L R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 154 VVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQTD 209
Query: 119 IAAYFADKT 127
+ +T
Sbjct: 210 LVRQLQART 218
>gi|419611993|ref|ZP_14145879.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H9]
gi|380591298|gb|EIB12283.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H9]
Length = 321
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEP-----DVPYLLEVFYEDDDLIALNKPSGLQVLPGG 64
++KNS L+ G +LV + LP E D+ + +E+ YED+DL+ LNKPS L V
Sbjct: 43 QNKNSFKLK-VGDKLVLN-LPLVEEAKPKFDIDFDIEILYEDEDLLVLNKPSNLVVHGAK 100
Query: 65 LFQQRTVLKQLQWRASKQS--SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122
+ T+ + W KQ S+L + + VHRL + TSG +L AK ++
Sbjct: 101 SVKSATL---VDWLIEKQYTLSTLGGEVRAGL-VHRLDKETSGAILIAKNNFTHQKLSEQ 156
Query: 123 FADKT 127
+DKT
Sbjct: 157 LSDKT 161
>gi|416177710|ref|ZP_11610079.1| RNA pseudouridine synthase [Neisseria meningitidis M6190]
gi|416192582|ref|ZP_11616688.1| RNA pseudouridine synthase [Neisseria meningitidis ES14902]
gi|433492351|ref|ZP_20449445.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM586]
gi|433494424|ref|ZP_20451494.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM762]
gi|433502775|ref|ZP_20459740.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM126]
gi|325132280|gb|EGC54973.1| RNA pseudouridine synthase [Neisseria meningitidis M6190]
gi|325137749|gb|EGC60324.1| RNA pseudouridine synthase [Neisseria meningitidis ES14902]
gi|432229140|gb|ELK84833.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM586]
gi|432231098|gb|ELK86768.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM762]
gi|432240871|gb|ELK96402.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM126]
Length = 307
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|421554611|ref|ZP_16000552.1| pseudouridine synthase [Neisseria meningitidis 98008]
gi|402332571|gb|EJU67896.1| pseudouridine synthase [Neisseria meningitidis 98008]
Length = 307
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPHIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|416213847|ref|ZP_11622540.1| RNA pseudouridine synthase [Neisseria meningitidis M01-240013]
gi|325144100|gb|EGC66407.1| RNA pseudouridine synthase [Neisseria meningitidis M01-240013]
Length = 307
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRKTSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|416183637|ref|ZP_11612650.1| RNA pseudouridine synthase [Neisseria meningitidis M13399]
gi|421557076|ref|ZP_16002985.1| pseudouridine synthase [Neisseria meningitidis 80179]
gi|421565170|ref|ZP_16010954.1| pseudouridine synthase [Neisseria meningitidis NM3081]
gi|325133994|gb|EGC56649.1| RNA pseudouridine synthase [Neisseria meningitidis M13399]
gi|402335761|gb|EJU71025.1| pseudouridine synthase [Neisseria meningitidis 80179]
gi|402345299|gb|EJU80419.1| pseudouridine synthase [Neisseria meningitidis NM3081]
Length = 307
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|261379850|ref|ZP_05984423.1| RNA pseudouridine synthase [Neisseria subflava NJ9703]
gi|284797545|gb|EFC52892.1| RNA pseudouridine synthase [Neisseria subflava NJ9703]
Length = 307
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKTMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQYLNVEDIT----PIHRLDKDTAGVMLLSLNPATRCDYQTMFQEKT 178
>gi|171778236|ref|ZP_02919442.1| hypothetical protein STRINF_00281 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282936|gb|EDT48360.1| pseudouridine synthase, RluA family [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 298
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K ++P L++ YED+D+ + KP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAENIP--LDIVYEDEDVAVVYKPQGMVVHPSAGHTSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VIRPGIVHRIDKDTSGLLMIAKNDTAHNALAAELKDKKSL 161
>gi|254304341|ref|ZP_04971699.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324533|gb|EDK89783.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 316
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YE+DD I +NK G+ V P T++ L + + SS + P +HRL
Sbjct: 85 LDVVYENDDFIVINKNYGMVVHPAYGNYTGTLVNALLYYTNNLSSV--NGNIRPGIIHRL 142
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG++L AK A +A+ F DKT
Sbjct: 143 DKDTSGLILIAKNNFAHAKLASMFIDKT 170
>gi|392402939|ref|YP_006439551.1| pseudouridine synthase, RluA family [Turneriella parva DSM 21527]
gi|390610893|gb|AFM12045.1| pseudouridine synthase, RluA family [Turneriella parva DSM 21527]
Length = 316
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 23 ELVYHRLPWK-EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
E V R P + EP+V + ED++ + +NKP GL V P G+++++T+ L R
Sbjct: 61 EAVAFRYPLRDEPEVNAEIATIAEDENFLVVNKPPGLPVHPSGIYKEQTLTALLVKRGIL 120
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
++ P P+HRL R TSG+L+ AK + A
Sbjct: 121 ET---------PHPLHRLDRETSGVLIMAKNRKAAAVF 149
>gi|254455655|ref|ZP_05069084.1| pseudouridylate synthase [Candidatus Pelagibacter sp. HTCC7211]
gi|207082657|gb|EDZ60083.1| pseudouridylate synthase [Candidatus Pelagibacter sp. HTCC7211]
Length = 325
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
+ L++ YED+DL+ +NKP+G+ + PG +T++ L K S S P VH
Sbjct: 80 FKLDIIYEDEDLLVINKPAGIIMHPGAGNYDKTIVNAL-MNYDKDSLSNIGDELRPGIVH 138
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFAD 125
R+ + TSG+++ AK ++ F+D
Sbjct: 139 RIDKNTSGLVVVAKNNETHESLSKQFSD 166
>gi|50085467|ref|YP_046977.1| pseudouridylate synthase [Acinetobacter sp. ADP1]
gi|49531443|emb|CAG69155.1| putative pseudouridylate synthase [Acinetobacter sp. ADP1]
Length = 304
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
++P Q A + + Y+R E VP+ + +E+ DL+ ++KP L + P G + Q T+L
Sbjct: 69 NSPYQ-ANTHIFYYRFLAHEIHVPFEHSILFENHDLLVVDKPHFLTISPTGKYVQETLLV 127
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ + + + P+HRL R T+G++L K ++ FA +
Sbjct: 128 RLKQQTGNEDLT---------PIHRLDRETAGVVLFCKRPESRGIYQTLFAKR 171
>gi|307944601|ref|ZP_07659941.1| ribosomal large subunit pseudouridine synthase D [Roseibium sp.
TrichSKD4]
gi|307772350|gb|EFO31571.1| ribosomal large subunit pseudouridine synthase D [Roseibium sp.
TrichSKD4]
Length = 341
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K ++P L + YEDD LI ++KP+GL V PG T++ L S + S
Sbjct: 87 KGENIP--LSIIYEDDHLIVVDKPAGLVVHPGAGNLTGTLVNALIHHCGDSLSGIGS-VK 143
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHR+ + TSG+L+ AKT A ++ FAD
Sbjct: 144 RPGIVHRIDKDTSGLLVVAKTDQAHQGLSEQFAD 177
>gi|256831879|ref|YP_003160606.1| pseudouridine synthase [Jonesia denitrificans DSM 20603]
gi|256685410|gb|ACV08303.1| pseudouridine synthase [Jonesia denitrificans DSM 20603]
Length = 362
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G + +R P EP+VP+ +V +EDDDL ++KP L P G + T L +L R
Sbjct: 112 GGLIHLYRDPDPEPEVPFACDVLFEDDDLYVIDKPHFLASTPKGRYVTETALVRL--RKD 169
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ LS P HRL R T+G+L+ K + + FA +
Sbjct: 170 TGNPELS-------PAHRLDRLTAGVLVFTKRRELRGAYQELFAQR 208
>gi|218767979|ref|YP_002342491.1| hypothetical protein NMA1085 [Neisseria meningitidis Z2491]
gi|385328187|ref|YP_005882490.1| YabO/YceC/SfhB family protein [Neisseria meningitidis alpha710]
gi|385337815|ref|YP_005891688.1| putative RNA pseudouridine synthase (RNA-uridine isomerase; RNA
pseudouridylate synthase) [Neisseria meningitidis WUE
2594]
gi|385853444|ref|YP_005899958.1| RNA pseudouridine synthase [Neisseria meningitidis H44/76]
gi|385854999|ref|YP_005901512.1| RNA pseudouridine synthase [Neisseria meningitidis M01-240355]
gi|416172229|ref|ZP_11608709.1| RNA pseudouridine synthase [Neisseria meningitidis OX99.30304]
gi|416197308|ref|ZP_11618518.1| RNA pseudouridine synthase [Neisseria meningitidis CU385]
gi|418290345|ref|ZP_12902507.1| RNA pseudouridine synthase [Neisseria meningitidis NM220]
gi|427826364|ref|ZP_18993418.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
H44/76]
gi|433464850|ref|ZP_20422335.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM422]
gi|433475469|ref|ZP_20432810.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
88050]
gi|433479401|ref|ZP_20436695.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
63041]
gi|433488093|ref|ZP_20445261.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
M13255]
gi|433490219|ref|ZP_20447348.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM418]
gi|433504840|ref|ZP_20461780.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
9506]
gi|433506887|ref|ZP_20463799.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
9757]
gi|433509021|ref|ZP_20465894.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
12888]
gi|433511132|ref|ZP_20467964.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
4119]
gi|433513219|ref|ZP_20470013.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
63049]
gi|433517365|ref|ZP_20474114.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
96023]
gi|433519586|ref|ZP_20476307.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
65014]
gi|433523906|ref|ZP_20480571.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
97020]
gi|433527975|ref|ZP_20484586.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM3652]
gi|433530179|ref|ZP_20486771.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM3642]
gi|433532406|ref|ZP_20488972.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2007056]
gi|433534191|ref|ZP_20490736.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2001212]
gi|433540719|ref|ZP_20497174.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
63006]
gi|121051987|emb|CAM08296.1| hypothetical protein NMA1085 [Neisseria meningitidis Z2491]
gi|308389039|gb|ADO31359.1| YabO/YceC/SfhB family protein [Neisseria meningitidis alpha710]
gi|316985760|gb|EFV64704.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
H44/76]
gi|319410229|emb|CBY90568.1| putative RNA pseudouridine synthase (RNA-uridine isomerase; RNA
pseudouridylate synthase) [Neisseria meningitidis WUE
2594]
gi|325130001|gb|EGC52795.1| RNA pseudouridine synthase [Neisseria meningitidis OX99.30304]
gi|325139980|gb|EGC62509.1| RNA pseudouridine synthase [Neisseria meningitidis CU385]
gi|325200448|gb|ADY95903.1| RNA pseudouridine synthase [Neisseria meningitidis H44/76]
gi|325203940|gb|ADY99393.1| RNA pseudouridine synthase [Neisseria meningitidis M01-240355]
gi|372201748|gb|EHP15634.1| RNA pseudouridine synthase [Neisseria meningitidis NM220]
gi|389606043|emb|CCA44956.1| ribosomal large subunit pseudouridine synthase D rRNA-uridine
isomerase D [Neisseria meningitidis alpha522]
gi|432204337|gb|ELK60382.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM422]
gi|432211287|gb|ELK67242.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
88050]
gi|432217204|gb|ELK73073.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
63041]
gi|432224559|gb|ELK80324.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
M13255]
gi|432228127|gb|ELK83828.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM418]
gi|432242355|gb|ELK97879.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
9506]
gi|432242676|gb|ELK98194.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
9757]
gi|432247835|gb|ELL03270.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
12888]
gi|432248623|gb|ELL04048.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
4119]
gi|432248896|gb|ELL04320.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
63049]
gi|432254374|gb|ELL09709.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
96023]
gi|432255577|gb|ELL10906.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
65014]
gi|432260805|gb|ELL16063.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
97020]
gi|432266282|gb|ELL21470.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM3652]
gi|432267810|gb|ELL22984.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM3642]
gi|432268351|gb|ELL23522.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2007056]
gi|432272701|gb|ELL27808.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2001212]
gi|432277734|gb|ELL32780.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
63006]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|433515343|ref|ZP_20472115.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2004090]
gi|432253931|gb|ELL09267.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2004090]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|330995872|ref|ZP_08319768.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
gi|329574403|gb|EGG55974.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
Length = 363
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+DL+ ++KP+GL V PG T++ + W K +
Sbjct: 109 DIP--LDIVYEDEDLMVVDKPAGLVVHPGCGNYTGTLVNAIAWHL-KDNPDYDPNDPTVG 165
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK AKT + F +KT+
Sbjct: 166 LVHRIDKDTSGLLVVAKNADAKTHLGRQFFNKTT 199
>gi|262370362|ref|ZP_06063688.1| RNA pseudouridine synthase [Acinetobacter johnsonii SH046]
gi|381196260|ref|ZP_09903602.1| putative pseudouridylate synthase [Acinetobacter lwoffii WJ10621]
gi|262314704|gb|EEY95745.1| RNA pseudouridine synthase [Acinetobacter johnsonii SH046]
Length = 304
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 11 HKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRT 70
H +SA L+ + Y+R E +VP E+ +E+D + ++KP L + P G + Q+T
Sbjct: 68 HTDSAYLEN--QHVFYYRFLAHEIEVPSQHEILFENDHFLVVDKPHFLTISPTGQYVQQT 125
Query: 71 VLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L +L+ KQ+ H P+HRL R T+G+++ +K ++ FA++
Sbjct: 126 LLVRLK----KQTG-----IEHLTPIHRLDRETAGLVMFSKCIHSRGMYQQMFAER 172
>gi|220927321|ref|YP_002502623.1| RluA family pseudouridine synthase [Methylobacterium nodulans ORS
2060]
gi|219951928|gb|ACL62320.1| pseudouridine synthase, RluA family [Methylobacterium nodulans ORS
2060]
Length = 337
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 13 NSAPLQGAGSELVYHRLPWKEPDVPYLLE----VFYEDDDLIALNKPSGLQVLPGGLFQQ 68
A ++ AG + V +P P P E + YEDDDLI ++KP GL V P
Sbjct: 52 RDAAVRVAGGQTVAVTVPPARPATPEAEERALIIPYEDDDLIVIDKPPGLVVHPAPGHDS 111
Query: 69 RTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
T++ L S + P VHRL + TSG+L+ AK +A ++ FAD
Sbjct: 112 GTLVNALIAHCGASLSGIGG-VRRPGIVHRLDKDTSGLLVVAKNDMAHAALSLQFAD 167
>gi|261400179|ref|ZP_05986304.1| RNA pseudouridine synthase [Neisseria lactamica ATCC 23970]
gi|269210178|gb|EEZ76633.1| RNA pseudouridine synthase [Neisseria lactamica ATCC 23970]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|307273068|ref|ZP_07554314.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|422695134|ref|ZP_16753122.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|422728751|ref|ZP_16785157.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|424761167|ref|ZP_18188749.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
gi|306510053|gb|EFM79077.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|315147417|gb|EFT91433.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|315150758|gb|EFT94774.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|402402430|gb|EJV35146.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
Length = 310
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P T++
Sbjct: 64 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSAGHPNGTLVN 120
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 121 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 174
>gi|304387818|ref|ZP_07369992.1| RNA pseudouridine synthase [Neisseria meningitidis ATCC 13091]
gi|304338083|gb|EFM04219.1| RNA pseudouridine synthase [Neisseria meningitidis ATCC 13091]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|300744294|ref|ZP_07073313.1| RNA pseudouridine synthase [Rothia dentocariosa M567]
gi|300380019|gb|EFJ76583.1| RNA pseudouridine synthase [Rothia dentocariosa M567]
Length = 365
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
V YED+ L+A++KP L V P G + +T L +L+ R +++ L + PVHRL R
Sbjct: 110 VLYEDEHLLAVDKPHYLPVTPRGAYVAQTALTKLRVR---ENNPLLT------PVHRLDR 160
Query: 102 GTSGILLCAKTKLAKTCIAAYFADK 126
T+GILL AKT+ A+ F ++
Sbjct: 161 PTAGILLFAKTREARGPFQTMFQNR 185
>gi|295136359|ref|YP_003587035.1| RNA pseudouridylate synthase [Zunongwangia profunda SM-A87]
gi|294984374|gb|ADF54839.1| RNA pseudouridylate synthase [Zunongwangia profunda SM-A87]
Length = 288
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 17 LQGAGSELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
L+G EL+ P K+ V L LEV YEDD + +NKP+G P +T+ L
Sbjct: 58 LEGQQIELLQ---PQKQQKVFELRLEVIYEDDHIAVINKPAGY---PTSGNYHKTIKNAL 111
Query: 76 QW--RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ +ASK+ L P P HRL TSGILLCAKT A + F DK
Sbjct: 112 PFNLQASKEIDKLEI----PQPAHRLDNPTSGILLCAKTNKALIELNRQFQDK 160
>gi|421567296|ref|ZP_16013032.1| pseudouridine synthase [Neisseria meningitidis NM3001]
gi|402344307|gb|EJU79448.1| pseudouridine synthase [Neisseria meningitidis NM3001]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKVMFYYRETSRESEPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|407009366|gb|EKE24517.1| hypothetical protein ACD_6C00100G0005 [uncultured bacterium]
Length = 302
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+P Q S Y+R E DVP+ ++ +E++ + ++KP L + P G + Q T+L
Sbjct: 68 ESPFQ-PNSHCFYYRFLAHEVDVPFQHQILFENEHFMVVDKPHFLTMSPTGQYVQETLLV 126
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ KQ+ + H P+HRL R T+G++L +K ++ FA +
Sbjct: 127 RLK----KQTGN-----EHLTPIHRLDRETAGVVLISKCVESRGLYQQLFATR 170
>gi|281425096|ref|ZP_06256009.1| ribosomal large subunit pseudouridine synthase D [Prevotella oris
F0302]
gi|281400940|gb|EFB31771.1| ribosomal large subunit pseudouridine synthase D [Prevotella oris
F0302]
Length = 377
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD L+ +NK +G+ V PG T++ + W K S +
Sbjct: 119 DIP--LDIVYEDDALMVINKQAGMVVHPGAGNFTGTLINAVAWHL-KDLESFDANDPEVG 175
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT AK+ + F +K++
Sbjct: 176 LVHRIDKDTSGLLVVAKTADAKSALGKQFFNKST 209
>gi|268598611|ref|ZP_06132778.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae MS11]
gi|268683976|ref|ZP_06150838.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268582742|gb|EEZ47418.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae MS11]
gi|268624260|gb|EEZ56660.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae SK-92-679]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLHPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|162447675|ref|YP_001620807.1| ribosomal large subunit pseudouridine synthase, RluA-like protein
[Acholeplasma laidlawii PG-8A]
gi|161985782|gb|ABX81431.1| ribosomal large subunit pseudouridine synthase, RluA-like protein
[Acholeplasma laidlawii PG-8A]
Length = 297
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP---V 96
L + YEDDD++ +NKP GL V P F + T++ L + +LS+ P+ +
Sbjct: 76 LNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLH----HTDTLSTHNDDPLRPGIL 131
Query: 97 HRLGRGTSGILLCAKTKLAKTCIA 120
HR+ + TSG++L AKT A +A
Sbjct: 132 HRIDKDTSGLILVAKTNEAHKILA 155
>gi|157829144|ref|YP_001495386.1| hypothetical protein A1G_07185 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|157801625|gb|ABV76878.1| hypothetical protein A1G_07185 [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 313
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ T+G+++ AK A +A K +
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQKQVI 166
>gi|424790529|ref|ZP_18217067.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|422797994|gb|EKU26165.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. graminis ART-Xtg29]
Length = 335
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 23 ELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
E H LP D+P LEV YEDD +I LNKP+GL V PG T++ L +R
Sbjct: 82 ETQTHALPE---DIP--LEVLYEDDQVIVLNKPAGLVVHPGAGNPTGTLVNALLYR---- 132
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
SL++ + VHRL + TSG ++ A+T A T + A + +
Sbjct: 133 DPSLAALPRAGI-VHRLDKDTSGAMVVARTLPAHTSLVAQLSAR 175
>gi|379019751|ref|YP_005295985.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hlp#2]
gi|376332331|gb|AFB29565.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hlp#2]
Length = 313
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ T+G+++ AK A +A K +
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQKQVI 166
>gi|407477639|ref|YP_006791516.1| hypothetical protein Eab7_1800 [Exiguobacterium antarcticum B7]
gi|407061718|gb|AFS70908.1| Hypothetical protein Eab7_1800 [Exiguobacterium antarcticum B7]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YED D+I +NKP G+ V P T++ L Q S + P VHR+
Sbjct: 80 LDVVYEDGDVIVINKPKGMVVHPAAGHVSGTLVNALLHHC--QDLSGINGVKRPGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK LA +A DKT+
Sbjct: 138 DKDTSGLLMVAKNDLAHESLAQQLKDKTT 166
>gi|268596481|ref|ZP_06130648.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae FA19]
gi|268550269|gb|EEZ45288.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae FA19]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R E P +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+
Sbjct: 74 GKTMFYYRETGSEDEPRIPFEEKILHIDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLH 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|407713454|ref|YP_006834019.1| Ribosomal large subunit pseudouridine synthase D [Burkholderia
phenoliruptrix BR3459a]
gi|407235638|gb|AFT85837.1| Ribosomal large subunit pseudouridine synthase D [Burkholderia
phenoliruptrix BR3459a]
Length = 395
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 4 IEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQV 60
I+ K + PL GA ELV LP + P+ P L++ YEDD L+ +NKP+G+ V
Sbjct: 77 IDGKPAKIRQPVPL-GATIELVPDLLPEQLAFTPE-PVPLDIVYEDDTLVVINKPAGMVV 134
Query: 61 LPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
P TVL L +R ++ L VHRL + TSG+++ A+T A+T +
Sbjct: 135 HPAAGNWSGTVLNGLLYRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLEAQTDLV 190
Query: 121 AYFADKT 127
+T
Sbjct: 191 RQLQART 197
>gi|293399421|ref|ZP_06643574.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae F62]
gi|291609990|gb|EFF39112.1| YabO/YceC/SfhB family protein [Neisseria gonorrhoeae F62]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+PGG F + T+L +L+ Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPGGRFLRETLLTRLRLHPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|389706162|ref|ZP_10186252.1| pseudouridylate synthase [Acinetobacter sp. HA]
gi|388610639|gb|EIM39754.1| pseudouridylate synthase [Acinetobacter sp. HA]
Length = 300
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
++P Q A S Y+R E VP+ ++ +E++ + ++KP L + P G + Q T+L
Sbjct: 66 NSPYQ-ANSHCFYYRFLAHEVHVPFEHQILFENEHFMVIDKPHFLTMSPTGQYVQETLL- 123
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
R KQ+ H P+HRL R T+G++L +K ++ FA +
Sbjct: 124 ---VRLKKQTG-----IEHLTPIHRLDRETAGVVLISKNVASRGLYQQLFATR 168
>gi|165933873|ref|YP_001650662.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Iowa]
gi|378721954|ref|YP_005286841.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Colombia]
gi|378723298|ref|YP_005288184.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Arizona]
gi|378724653|ref|YP_005289537.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hauke]
gi|379017130|ref|YP_005293365.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Brazil]
gi|379018438|ref|YP_005294673.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hino]
gi|165908960|gb|ABY73256.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Iowa]
gi|376325654|gb|AFB22894.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Brazil]
gi|376326978|gb|AFB24217.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Colombia]
gi|376328322|gb|AFB25560.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Arizona]
gi|376331004|gb|AFB28240.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hino]
gi|376333668|gb|AFB30901.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hauke]
Length = 313
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ T+G+++ AK A +A K +
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQKQVI 166
>gi|126727903|ref|ZP_01743731.1| putative Pseudouridine synthase, Rlu [Rhodobacterales bacterium
HTCC2150]
gi|126702844|gb|EBA01949.1| putative Pseudouridine synthase, Rlu [Rhodobacterales bacterium
HTCC2150]
Length = 308
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LE+ +EDDDLI +NKP G+ V P T++ L S + + P
Sbjct: 45 DIP--LEILFEDDDLIVVNKPVGMVVHPAPGSPSGTLVNALLHHFGGNLSGIGGE-KRPG 101
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK+ A +AA F T
Sbjct: 102 IVHRIDKDTSGVLVVAKSDAAHHGLAAQFEAHT 134
>gi|260909666|ref|ZP_05916361.1| ribosomal large subunit pseudouridine synthase D [Prevotella sp.
oral taxon 472 str. F0295]
gi|260636225|gb|EEX54220.1| ribosomal large subunit pseudouridine synthase D [Prevotella sp.
oral taxon 472 str. F0295]
Length = 349
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YED+ L+ +NKP+G+ V PG T++ + W + S + VHR+
Sbjct: 99 LDVVYEDEALMVINKPAGMVVHPGAGNFNGTLINAVAWHL-RNMPSFDANDPEVGLVHRI 157
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AK + F +KT+
Sbjct: 158 DKDTSGLLVVAKTPEAKRKLGLQFFNKTT 186
>gi|121533717|ref|ZP_01665544.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121307708|gb|EAX48623.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 309
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP G+ V P + T++ L R + S ++ S P VHRL
Sbjct: 85 LDILYEDEDIIVINKPRGMVVHPAAGNYEGTLVNAL-LRHCDRLSGING-VSRPGIVHRL 142
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+++ AKT A +A ++T+
Sbjct: 143 DKDTSGVMMVAKTDRAHLDLARQIKERTA 171
>gi|194468025|ref|ZP_03074011.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
gi|194452878|gb|EDX41776.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
Length = 303
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD+I +NKP G+ V P T++ L + + S+++ + P
Sbjct: 77 DIP--LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHSP--LSTINGEFR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK +A + A KT+
Sbjct: 132 IVHRIDKDTSGLLMVAKNDMAHRSLTAQLKAKTN 165
>gi|148544158|ref|YP_001271528.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri DSM 20016]
gi|184153530|ref|YP_001841871.1| pseudouridylate synthase [Lactobacillus reuteri JCM 1112]
gi|227364587|ref|ZP_03848648.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM2-3]
gi|325682298|ref|ZP_08161815.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM4-1A]
gi|148531192|gb|ABQ83191.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri DSM 20016]
gi|183224874|dbj|BAG25391.1| pseudouridylate synthase [Lactobacillus reuteri JCM 1112]
gi|227070424|gb|EEI08786.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM2-3]
gi|324978137|gb|EGC15087.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM4-1A]
Length = 303
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD+I +NKP G+ V P T++ L + + S+++ + P
Sbjct: 77 DIP--LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHSP--LSTINGEFR-PG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK +A + A KT+
Sbjct: 132 IVHRIDKDTSGLLMVAKNDMAHRSLTAQLKAKTN 165
>gi|50955140|ref|YP_062428.1| ribosomal large subunit pseudouridine synthase [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951622|gb|AAT89323.1| ribosomal large subunit pseudouridine synthase [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 306
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 20 AGSELVYHRLPWKEPD-VPYL---LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
AGS L P +EP VP + L + +EDDD++ L+KP+G+ P ++ TVL L
Sbjct: 56 AGSWLDVTWQPREEPRIVPIVVSELTIVHEDDDIVVLDKPAGVAAHPSIGWEGPTVLGAL 115
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ S+S + + + V HRL GTSG+++ AK++ A T + F D+T
Sbjct: 116 AAAGFRISTSGAPERAGIV--HRLDAGTSGLMVVAKSEHAYTVLKRAFHDRT 165
>gi|312114651|ref|YP_004012247.1| pseudouridine synthase [Rhodomicrobium vannielii ATCC 17100]
gi|311219780|gb|ADP71148.1| pseudouridine synthase, RluA family [Rhodomicrobium vannielii ATCC
17100]
Length = 358
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YED LI ++KP+GL V PG T++ L S + + P VHRL
Sbjct: 91 LNVVYEDASLIVIDKPAGLVVHPGAGNPNGTLVNALIAHCGDSLSGIGG-VTRPGIVHRL 149
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+++ AKT A ++A FAD
Sbjct: 150 DKNTSGLMVVAKTDKAHRSLSAQFAD 175
>gi|262375387|ref|ZP_06068620.1| pseudouridylate synthase [Acinetobacter lwoffii SH145]
gi|262309641|gb|EEY90771.1| pseudouridylate synthase [Acinetobacter lwoffii SH145]
Length = 302
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+P Q A S Y+R E VP+ ++ +E++ + ++KP L + P G + Q T+L
Sbjct: 68 ESPFQ-ANSHCYYYRFLAHEVHVPFQHQILFENEHFMVVDKPHFLTMSPTGQYVQETLLV 126
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L+ KQ+ + H P+HRL R T+G++L +K ++ FA +
Sbjct: 127 RLK----KQTGN-----EHLTPIHRLDRETAGVVLISKCVESRGIYQQMFATR 170
>gi|226356664|ref|YP_002786404.1| ribosomal large subunit pseudouridine synthase D [Deinococcus
deserti VCD115]
gi|226318654|gb|ACO46650.1| putative ribosomal large subunit pseudouridine synthase D
[Deinococcus deserti VCD115]
Length = 321
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS--KQSSSLSSQASH 92
D+P L+V YEDD LIA+NKP G+ P T++ L R +Q S
Sbjct: 74 DLP--LDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPDYDSEAGYR 131
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHRL + TSG+++ AKT A +AA F D+ +
Sbjct: 132 PGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRET 167
>gi|408491604|ref|YP_006867973.1| ribosomal large subunit pseudouridine synthase RluA [Psychroflexus
torquis ATCC 700755]
gi|408468879|gb|AFU69223.1| ribosomal large subunit pseudouridine synthase RluA [Psychroflexus
torquis ATCC 700755]
Length = 292
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 18 QGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77
+G EL L +K+ P L+V +EDD + +NKP G G F +T+ L +
Sbjct: 65 EGQVLELFAEELLYKKKVFPLQLKVIFEDDSMAVVNKPEGYPT-NGNYF--KTIENALTY 121
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
++SS + +P PVHRL TSG+L+ AKT +K+ ++ F
Sbjct: 122 NL--KTSSEKDKLPYPQPVHRLDNPTSGLLIIAKTLSSKSYLSVLF 165
>gi|416188142|ref|ZP_11614611.1| RNA pseudouridine synthase [Neisseria meningitidis M0579]
gi|421561027|ref|ZP_16006880.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM2657]
gi|254670442|emb|CBA06065.1| pseudouridylate synthase [Neisseria meningitidis alpha153]
gi|325135925|gb|EGC58535.1| RNA pseudouridine synthase [Neisseria meningitidis M0579]
gi|402339507|gb|EJU74723.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM2657]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|385851475|ref|YP_005897990.1| RNA pseudouridine synthase [Neisseria meningitidis M04-240196]
gi|325206298|gb|ADZ01751.1| RNA pseudouridine synthase [Neisseria meningitidis M04-240196]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|161869801|ref|YP_001598969.1| YabO/YceC/SfhB family protein [Neisseria meningitidis 053442]
gi|161595354|gb|ABX73014.1| YabO/YceC/SfhB family protein [Neisseria meningitidis 053442]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|71083312|ref|YP_266031.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062425|gb|AAZ21428.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1062]
Length = 326
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
+ L++ YEDDDL+ +NKP+G+ + PG T++ L +K S S P VH
Sbjct: 80 FKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNAL-MHYNKDSLSTIGDELRPGIVH 138
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
R+ + TSG+++ AK ++ F++ T
Sbjct: 139 RIDKDTSGLIVIAKNNETHENLSHQFSEHT 168
>gi|418288095|ref|ZP_12900612.1| RNA pseudouridine synthase [Neisseria meningitidis NM233]
gi|372202621|gb|EHP16408.1| RNA pseudouridine synthase [Neisseria meningitidis NM233]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|433463302|ref|ZP_20420861.1| pseudouridine synthase [Halobacillus sp. BAB-2008]
gi|432187812|gb|ELK45069.1| pseudouridine synthase [Halobacillus sp. BAB-2008]
Length = 303
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 29 LPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
+P EP D+P L+V YED+D+I +NKPSG+ + P T++ L
Sbjct: 64 IPEPEPMDILPEDIP--LDVVYEDEDVIVVNKPSGMVIHPSAGHYSGTLVNALLHHCDDL 121
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
S + P VHR+ + TSG+L+ AK +A +A ++KT
Sbjct: 122 SG--INGVERPGIVHRIDKDTSGLLMVAKNDVAHQSLARQLSEKT 164
>gi|421563082|ref|ZP_16008904.1| pseudouridine synthase [Neisseria meningitidis NM2795]
gi|421906653|ref|ZP_16336545.1| hypothetical protein BN21_0455 [Neisseria meningitidis alpha704]
gi|393292219|emb|CCI72490.1| hypothetical protein BN21_0455 [Neisseria meningitidis alpha704]
gi|402341789|gb|EJU76962.1| pseudouridine synthase [Neisseria meningitidis NM2795]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|385339824|ref|YP_005893696.1| RNA pseudouridine synthase [Neisseria meningitidis G2136]
gi|325198068|gb|ADY93524.1| RNA pseudouridine synthase [Neisseria meningitidis G2136]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|385342140|ref|YP_005896011.1| RNA pseudouridine synthase [Neisseria meningitidis M01-240149]
gi|385857012|ref|YP_005903524.1| RNA pseudouridine synthase [Neisseria meningitidis NZ-05/33]
gi|421558884|ref|ZP_16004762.1| pseudouridine synthase [Neisseria meningitidis 92045]
gi|254673322|emb|CBA08488.1| pseudouridylate synthase [Neisseria meningitidis alpha275]
gi|325202346|gb|ADY97800.1| RNA pseudouridine synthase [Neisseria meningitidis M01-240149]
gi|325207901|gb|ADZ03353.1| RNA pseudouridine synthase [Neisseria meningitidis NZ-05/33]
gi|402337627|gb|EJU72875.1| pseudouridine synthase [Neisseria meningitidis 92045]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|261346208|ref|ZP_05973852.1| ribosomal large subunit pseudouridine synthase D [Providencia
rustigianii DSM 4541]
gi|282565514|gb|EFB71049.1| ribosomal large subunit pseudouridine synthase D [Providencia
rustigianii DSM 4541]
Length = 325
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W+ D+P L+V YED+D++ +NKP GL V PG T+L L +R + + +
Sbjct: 77 WEPQDIP--LDVVYEDEDILVINKPRGLVVHPGAGNPDGTILNALLYRYPEIADVPRAGI 134
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
VHRL + T+G+++ AKT A+T +
Sbjct: 135 -----VHRLDKDTTGLMVVAKTVPAQTHL 158
>gi|421550412|ref|ZP_15996417.1| pseudouridine synthase [Neisseria meningitidis 69166]
gi|433471204|ref|ZP_20428595.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
68094]
gi|433477347|ref|ZP_20434670.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
70012]
gi|433496612|ref|ZP_20453653.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
M7089]
gi|433498672|ref|ZP_20455681.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
M7124]
gi|433500640|ref|ZP_20457626.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM174]
gi|433521689|ref|ZP_20478384.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
61103]
gi|433525829|ref|ZP_20482463.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
69096]
gi|433536554|ref|ZP_20493060.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
77221]
gi|433538739|ref|ZP_20495219.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
70030]
gi|402330627|gb|EJU65974.1| pseudouridine synthase [Neisseria meningitidis 69166]
gi|432209693|gb|ELK65660.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
68094]
gi|432216569|gb|ELK72450.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
70012]
gi|432234506|gb|ELK90126.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
M7124]
gi|432235312|gb|ELK90928.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
M7089]
gi|432235931|gb|ELK91540.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
NM174]
gi|432260462|gb|ELL15721.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
61103]
gi|432262020|gb|ELL17265.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
69096]
gi|432274027|gb|ELL29121.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
77221]
gi|432274747|gb|ELL29834.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
70030]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|365902765|ref|ZP_09440588.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
malefermentans KCTC 3548]
Length = 306
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L++ YEDDD+I +NKP+G+ V P T++ L + + S +
Sbjct: 72 EPEDIP--LDIVYEDDDVIVVNKPAGMVVHPSAGHPNHTLVNALLYHS---PLSTINGTF 126
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHR+ + T+G+L+ AK A +AA KT+
Sbjct: 127 RPGIVHRIDKDTTGLLMVAKNDHAHQSLAAQLKAKTN 163
>gi|385324393|ref|YP_005878832.1| putative RNA pseudouridine synthase (RNA-uridine isomerase; RNA
pseudouridylate synthase) [Neisseria meningitidis 8013]
gi|261392780|emb|CAX50356.1| putative RNA pseudouridine synthase (RNA-uridine isomerase; RNA
pseudouridylate synthase) [Neisseria meningitidis 8013]
Length = 307
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|393773244|ref|ZP_10361642.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. Rr 2-17]
gi|392721124|gb|EIZ78591.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. Rr 2-17]
Length = 314
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V +ED+ LI ++KP+GL V P T++ L Q S + A P
Sbjct: 79 DIP--LSVVFEDEFLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCHGQLSGIGGVAR-PG 135
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AKT A +AA FAD +
Sbjct: 136 IVHRIDKDTSGLLVVAKTDRAHEGLAAQFADHS 168
>gi|91762258|ref|ZP_01264223.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718060|gb|EAS84710.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1002]
Length = 326
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVH 97
+ L++ YEDDDL+ +NKP+G+ + PG T++ L +K S S P VH
Sbjct: 80 FKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNAL-MHYNKDSLSTIGDELRPGIVH 138
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
R+ + TSG+++ AK ++ F++ T
Sbjct: 139 RIDKDTSGLIVIAKNNETHENLSHQFSEHT 168
>gi|421544227|ref|ZP_15990305.1| pseudouridine synthase [Neisseria meningitidis NM140]
gi|421546337|ref|ZP_15992386.1| pseudouridine synthase [Neisseria meningitidis NM183]
gi|421552631|ref|ZP_15998605.1| pseudouridine synthase [Neisseria meningitidis NM576]
gi|402324072|gb|EJU59510.1| pseudouridine synthase [Neisseria meningitidis NM183]
gi|402324339|gb|EJU59775.1| pseudouridine synthase [Neisseria meningitidis NM140]
gi|402331263|gb|EJU66604.1| pseudouridine synthase [Neisseria meningitidis NM576]
Length = 307
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|373458939|ref|ZP_09550706.1| pseudouridine synthase, RluA family [Caldithrix abyssi DSM 13497]
gi|371720603|gb|EHO42374.1| pseudouridine synthase, RluA family [Caldithrix abyssi DSM 13497]
Length = 322
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP+ P + + YED+DL+ ++KP+G+ V PG + T++ L + + S + + +A
Sbjct: 74 EPE-PIPINIVYEDEDLLVIDKPAGMVVHPGKGNESNTLVNALLYHTN--SLADTGEAVR 130
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P VHRL + TSG+L+ AK A+ + F K
Sbjct: 131 PGIVHRLDKDTSGLLVIAKNDRAQRHLRRQFDTK 164
>gi|336426840|ref|ZP_08606848.1| hypothetical protein HMPREF0994_02854 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010480|gb|EGN40463.1| hypothetical protein HMPREF0994_02854 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 307
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 33 EPDVP---YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
EPD+ L++ YEDDD++ +NKP G+ V P T++ + + S ++
Sbjct: 71 EPDIEAENIPLDILYEDDDVLVVNKPKGMVVHPAAGHYSGTLVNAVMYHCRGSLSGING- 129
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ R T+G L+ K A IAA D T V
Sbjct: 130 VMRPGIVHRIDRDTTGSLIICKNDNAHLSIAAQLKDHTIV 169
>gi|255261883|ref|ZP_05341225.1| ribosomal large subunit pseudouridine synthase D [Thalassiobium sp.
R2A62]
gi|255104218|gb|EET46892.1| ribosomal large subunit pseudouridine synthase D [Thalassiobium sp.
R2A62]
Length = 341
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDDDLI +NKPSG+ V P T++ L S + + P
Sbjct: 82 DIP--LDLVFEDDDLIVINKPSGMVVHPAPGSPSGTLVNALMHHCGDSLSGVGGE-KRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK+ A +AA F T
Sbjct: 139 IVHRIDKETSGLLVVAKSDKAHHGLAAQFEAHT 171
>gi|84515394|ref|ZP_01002756.1| ribosomal large subunit pseudouridine synthase D [Loktanella
vestfoldensis SKA53]
gi|84510677|gb|EAQ07132.1| ribosomal large subunit pseudouridine synthase D [Loktanella
vestfoldensis SKA53]
Length = 349
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V +EDDDLI +NKP+G+ V P T++ L S + P VHR+
Sbjct: 91 LDVVFEDDDLIVINKPAGMVVHPAPGTADGTLVNALIHHCGDSLSGVGG-LKRPGIVHRI 149
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK+ A +A FAD T
Sbjct: 150 DKDTSGLLVVAKSDRAHHHLADQFADHT 177
>gi|15676763|ref|NP_273908.1| YabO/YceC/SfhB family protein [Neisseria meningitidis MC58]
gi|7226104|gb|AAF41278.1| YabO/YceC/SfhB family protein [Neisseria meningitidis MC58]
Length = 307
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|416205449|ref|ZP_11620540.1| RNA pseudouridine synthase [Neisseria meningitidis 961-5945]
gi|433466998|ref|ZP_20424455.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
87255]
gi|433469010|ref|ZP_20426439.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
98080]
gi|325142086|gb|EGC64512.1| RNA pseudouridine synthase [Neisseria meningitidis 961-5945]
gi|432203574|gb|ELK59625.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
87255]
gi|432205403|gb|ELK61433.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
98080]
Length = 307
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|152990499|ref|YP_001356221.1| ribosomal large subunit pseudouridine synthase D [Nitratiruptor sp.
SB155-2]
gi|151422360|dbj|BAF69864.1| ribosomal large subunit pseudouridine synthase D [Nitratiruptor sp.
SB155-2]
Length = 319
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS-SSLSSQASHP 93
DV + +E YED+D++ LNKP+GL V P ++ T++ L +A+ S S+LS + H
Sbjct: 72 DVHFDVERIYEDEDILVLNKPAGLVVHPAPSVKEPTLVDWL--KANDISLSTLSGEERHG 129
Query: 94 VPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ VHRL + TSG+++ AK ++ DK+
Sbjct: 130 I-VHRLDKETSGLIVIAKNNETHQALSKQLQDKS 162
>gi|414074219|ref|YP_006999436.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris UC509.9]
gi|413974139|gb|AFW91603.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 301
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LE+ YED D+ +NKP G+ V P T++ + + K SS++ P
Sbjct: 74 DLP--LEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMYHI-KDLSSING-VIRPG 129
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +A DKTS
Sbjct: 130 IVHRIDKDTSGLLMIAKNDKAHESLADQLKDKTS 163
>gi|225022032|ref|ZP_03711224.1| hypothetical protein CORMATOL_02064 [Corynebacterium matruchotii
ATCC 33806]
gi|224945153|gb|EEG26362.1| hypothetical protein CORMATOL_02064 [Corynebacterium matruchotii
ATCC 33806]
Length = 300
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
A E+ ++R+P E VPY E +ED+ L+ ++KP L +P G K + A
Sbjct: 54 ANQEVWFYRIPAPEVPVPYRCETIFEDERLLVVDKPPFLATMPRG--------KHITQSA 105
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ Q L+ P HRL R TSG+L+ KT+ + FA + +
Sbjct: 106 TVQLRKLTGNGEL-SPAHRLDRLTSGVLVFTKTREVRGAYQQLFARREA 153
>gi|417081029|ref|ZP_11950621.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus MTCC 5462]
gi|328461874|gb|EGF34095.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus MTCC 5462]
Length = 260
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 30 PWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
P K P LE+ YEDD +I +NKP G+ V P T++ L + +
Sbjct: 30 PLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGHPDGTLVNGLLYHTKLPG---ING 86
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AKT+ A+ ++A KTS+
Sbjct: 87 VIRPGIVHRIDKDTSGLLMVAKTETAQLSLSAQLKAKTSI 126
>gi|254966988|gb|ACT97528.1| ribosomal large subunit pseudouridine synthase D [uncultured
organism]
Length = 274
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ V YEDD L+ +NK +G+ V PG T+++ + W + + VHR+
Sbjct: 18 INVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHL-RDMPEFDANDPEVGLVHRI 76
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AKT + F +KT+
Sbjct: 77 DKDTSGLLVVAKTPTAKTALGKQFFNKTT 105
>gi|167386039|ref|XP_001737591.1| ribosomal pseudouridine synthase [Entamoeba dispar SAW760]
gi|165899521|gb|EDR26097.1| ribosomal pseudouridine synthase, putative [Entamoeba dispar
SAW760]
Length = 389
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 15/97 (15%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
H LP VP LL + +ED+D+I +NKPSG+ GG + + TV+ L+
Sbjct: 131 HELP-----VPCLLPIIHEDNDVIVVNKPSGIPTHSGGRYTENTVINILE---------- 175
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+ VHRL R TSG+L+ AK+ I +F
Sbjct: 176 KERNIKLFGVHRLDRLTSGVLIIAKSSEIANEIQRHF 212
>gi|164687826|ref|ZP_02211854.1| hypothetical protein CLOBAR_01470 [Clostridium bartlettii DSM
16795]
gi|164603101|gb|EDQ96566.1| pseudouridine synthase, RluA family [Clostridium bartlettii DSM
16795]
Length = 307
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P +++ YEDDDL+ +NKP + V P + T++ + + SS++ P
Sbjct: 82 DIP--IDIVYEDDDLLIVNKPQDMVVHPAPGNYENTLVNAILYHCKDNLSSING-VIRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSGIL+ AK A +A D +
Sbjct: 139 IVHRIDKDTSGILMIAKNNNAHNSLAEQLKDHS 171
>gi|393778637|ref|ZP_10366902.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
412 str. F0487]
gi|392611699|gb|EIW94429.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
412 str. F0487]
Length = 352
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+G+ V PG T++ L + ++ S++ P VHR+
Sbjct: 104 LKIVYEDDSLLVVNKPAGMVVHPGHGNYSGTLINALVYHFENLPNNSSNR---PGLVHRI 160
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A + F +KT+
Sbjct: 161 DKDTSGLLVVAKTEEAMLHLTQQFFNKTT 189
>gi|390944690|ref|YP_006408451.1| 23S RNA-specific pseudouridylate synthase [Belliella baltica DSM
15883]
gi|390418118|gb|AFL85696.1| 23S RNA-specific pseudouridylate synthase [Belliella baltica DSM
15883]
Length = 555
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 5 EFYSTKHKNSAPLQG---AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVL 61
EFY P+ G AG E+ + L K P LEV YEDD LI +NKP+ +
Sbjct: 318 EFYPACRSKCLPILGHMLAGMEVDENPL-LKNPAEGKKLEVIYEDDFLIVINKPAEFLSV 376
Query: 62 PGGLFQQRTVLKQLQWRASKQSSSLSSQASHP--VPVHRLGRGTSGILLCAKTKLAKTCI 119
PG + V +Q R +++ HP + VHRL + TSGI+L AK K +
Sbjct: 377 PG-----KNVTDSVQKRITEK---------HPEAILVHRLDQSTSGIILVAKNKFTHQQL 422
Query: 120 AAYFADKT 127
A F +T
Sbjct: 423 QAQFIKRT 430
>gi|328957532|ref|YP_004374918.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
gi|328673856|gb|AEB29902.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
Length = 301
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P +E+ Y+D+D++ +NK G+ V P Q T++ L + S + P
Sbjct: 76 DIP--IEIVYQDEDVVVVNKAQGMVVHPSAGHQTGTLVNALMHHITDLSGI--NGTIRPG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AK A +AA DKTS+
Sbjct: 132 IVHRIDKDTSGLLMVAKNDAAHEKLAAQLKDKTSL 166
>gi|421863096|ref|ZP_16294797.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379425|emb|CBX21992.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 307
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|121634642|ref|YP_974887.1| hypothetical protein NMC0808 [Neisseria meningitidis FAM18]
gi|120866348|emb|CAM10091.1| hypothetical protein NMC0808 [Neisseria meningitidis FAM18]
Length = 307
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|444430277|ref|ZP_21225455.1| putative pseudouridine synthase [Gordonia soli NBRC 108243]
gi|443888821|dbj|GAC67176.1| putative pseudouridine synthase [Gordonia soli NBRC 108243]
Length = 302
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 16 PLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
P + S +Y +P + P +P+ L + Y DDD++ ++KP L +P G + L +L
Sbjct: 51 PARLNSSVYLYRDVPDEVP-IPFDLPILYRDDDIVVVDKPHFLATMPRGRHVAESALVRL 109
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
R S S+++S P HRL R T+G+LLC ++ FAD+
Sbjct: 110 --RRSLGSTTVS-------PAHRLDRLTAGVLLCTLRPEVRSAYQQLFADR 151
>gi|408370334|ref|ZP_11168111.1| RluA family pseudouridine synthase [Galbibacter sp. ck-I2-15]
gi|407744092|gb|EKF55662.1| RluA family pseudouridine synthase [Galbibacter sp. ck-I2-15]
Length = 343
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD+L+ +NKP+G+ V PG T++ L + + L+S P
Sbjct: 93 DIP--LDIVYEDDELLVVNKPAGMVVHPGHGNYSGTLINALIFHFD--NLPLNSNER-PG 147
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A + ++ F KTS
Sbjct: 148 LVHRIDKDTSGLLVVAKTENALSHLSKQFFHKTS 181
>gi|310815298|ref|YP_003963262.1| NAD(P) transhydrogenase subunit alpha [Ketogulonicigenium vulgare
Y25]
gi|385232838|ref|YP_005794180.1| ribosomal large subunit pseudouridine synthase D
[Ketogulonicigenium vulgare WSH-001]
gi|308754033|gb|ADO41962.1| NAD(P) transhydrogenase subunit alpha [Ketogulonicigenium vulgare
Y25]
gi|343461749|gb|AEM40184.1| Ribosomal large subunit pseudouridine synthase D
[Ketogulonicigenium vulgare WSH-001]
Length = 339
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YEDDDLI ++KP+G+ V P T++ L + S + P
Sbjct: 82 DIP--LNVVYEDDDLIVIDKPAGMVVHPAPGSPDGTLVNALIHHCGESLSGVGGM-KRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
VHR+ + TSG+L+ AKT A +AA F
Sbjct: 139 IVHRIDKDTSGLLVAAKTDRAHHGLAALF 167
>gi|402756315|ref|ZP_10858571.1| pseudouridylate synthase [Acinetobacter sp. NCTC 7422]
Length = 318
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 17 LQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
L + + Y+R E VP+ ++ +E+D+L+ ++KP L + P G + Q T+L
Sbjct: 69 LYTPNTHIFYYRFLAHEIHVPFQHKILFENDELLVVDKPHFLTMSPTGQYVQETLL---- 124
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
R KQ+ P+HRL R T+G++L K A+ FA++
Sbjct: 125 VRLKKQTGYADL-----TPIHRLDRETAGVVLFCKKATARGIYQQLFAER 169
>gi|387825679|ref|YP_005805132.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi JD1]
gi|312147848|gb|ADQ30507.1| ribosomal large subunit pseudouridine synthase D [Borrelia
burgdorferi JD1]
Length = 326
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDFNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKRT 172
>gi|199598373|ref|ZP_03211792.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|258508458|ref|YP_003171209.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus GG]
gi|385828126|ref|YP_005865898.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
gi|199590692|gb|EDY98779.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|257148385|emb|CAR87358.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus GG]
gi|259649771|dbj|BAI41933.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
Length = 306
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 30 PWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
P K P LE+ YEDD +I +NKP G+ V P T++ L + +
Sbjct: 67 PLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGHPDGTLVNGLLYHTKLPG---ING 123
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AKT+ A+ ++A KTS+
Sbjct: 124 VIRPGIVHRIDKDTSGLLMVAKTEAAQLSLSAQLKAKTSI 163
>gi|451945397|ref|YP_007466033.1| hypothetical protein A605_13375 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451904784|gb|AGF73671.1| hypothetical protein A605_13375 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 289
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G ++ ++R+P EP VP+ + + + D+DLI ++KP L +P G TV +L+
Sbjct: 47 GWDVYFYRMPAPEPTVPHEIGIIHRDEDLIVVDKPPYLATMPRGRHITETVTVRLRRSTG 106
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
Q S P HRL R TSG+L+ + FA++
Sbjct: 107 IQELS---------PAHRLDRLTSGVLVFTVRPEVRGAYQRLFAER 143
>gi|83592447|ref|YP_426199.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum ATCC 11170]
gi|386349164|ref|YP_006047412.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum F11]
gi|83575361|gb|ABC21912.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum ATCC 11170]
gi|346717600|gb|AEO47615.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
rubrum F11]
Length = 343
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YEDDDLI ++K +G+ V PG T++ L S + + P VHRL
Sbjct: 102 LTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSLSGIGGE-RRPGIVHRL 160
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFA 124
+ TSG+++ AKT LA +A FA
Sbjct: 161 DKDTSGLMIAAKTDLAHHGLAEQFA 185
>gi|62391784|ref|YP_227186.1| ribosomal pseudouridine synthase [Corynebacterium glutamicum ATCC
13032]
gi|41327126|emb|CAF20969.1| Putative ribosomal pseudouridine synthase [Corynebacterium
glutamicum ATCC 13032]
Length = 338
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P E +PY + V +EDDD++ ++KP L +P G T L ++ R ++
Sbjct: 97 FYRMPAAERPIPYKIHVIHEDDDILVIDKPPYLATMPRGRHITETAL--VKMRVLTGNND 154
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L+ P HRL R TSG+L+ K + FA + +
Sbjct: 155 LT-------PAHRLDRLTSGVLVMVKKPELRGAYQTLFARREA 190
>gi|338989142|ref|ZP_08634018.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
gi|338205941|gb|EGO94201.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
Length = 353
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YED DLI ++KP+GL V P T++ L + + + P VHRL
Sbjct: 110 LTVLYEDSDLIVIDKPAGLVVHPAPGNPDGTLVNALIAHCGDSLAGIGGE-RRPGIVHRL 168
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+++ AKT+LA ++A FA +
Sbjct: 169 DKDTSGVMVAAKTELALNALSAAFAAR 195
>gi|332638853|ref|ZP_08417716.1| pseudouridine synthase [Weissella cibaria KACC 11862]
Length = 304
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDL+ +NKP G+ V P + T++ L + S + P
Sbjct: 75 DIP--LDIVYEDDDLLVVNKPQGMVVHPALGHESGTLVNALMFHT---PLSTINGVVRPG 129
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AK A ++A DK ++
Sbjct: 130 IVHRIDKDTSGLLMVAKNDKAHESLSAQLKDKKNL 164
>gi|259503429|ref|ZP_05746331.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
antri DSM 16041]
gi|259168507|gb|EEW53002.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
antri DSM 16041]
Length = 303
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + S+++ + P VHR+
Sbjct: 79 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHCP--LSTINGEFR-PGIVHRI 135
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK LA +AA KT+
Sbjct: 136 DKDTSGLLMVAKNDLAHRSLAAQLKAKTN 164
>gi|229552260|ref|ZP_04440985.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|258539670|ref|YP_003174169.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus Lc 705]
gi|385835319|ref|YP_005873093.1| RluA family pseudouridine synthase [Lactobacillus rhamnosus ATCC
8530]
gi|418070676|ref|ZP_12707951.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus R0011]
gi|421770413|ref|ZP_16207110.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
gi|421773631|ref|ZP_16210272.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP3]
gi|423077996|ref|ZP_17066683.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|229314396|gb|EEN80369.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|257151346|emb|CAR90318.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus Lc 705]
gi|355394810|gb|AER64240.1| pseudouridine synthase, RluA family protein [Lactobacillus
rhamnosus ATCC 8530]
gi|357540096|gb|EHJ24113.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus R0011]
gi|357552376|gb|EHJ34149.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|411181631|gb|EKS48798.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP3]
gi|411182285|gb|EKS49437.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
Length = 306
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 30 PWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
P K P LE+ YEDD +I +NKP G+ V P T++ L + +
Sbjct: 67 PLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGHPDGTLVNGLLYHTKLPG---ING 123
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AKT+ A+ ++A KTS+
Sbjct: 124 VIRPGIVHRIDKDTSGLLMVAKTEAAQLSLSAQLKAKTSI 163
>gi|255322530|ref|ZP_05363675.1| ribosomal large subunit pseudouridine synthase D [Campylobacter
showae RM3277]
gi|255300438|gb|EET79710.1| ribosomal large subunit pseudouridine synthase D [Campylobacter
showae RM3277]
Length = 354
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS--SSLSSQA 90
E +VP + YEDDDL+ LNKP+ L V P ++ T+ + W +K S+LS Q+
Sbjct: 93 EFEVP----IIYEDDDLLVLNKPANLVVHPAPSVKEPTL---VDWLGAKGFLLSNLSGQS 145
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ VHRL +GTSG ++ AK A ++ +DK+
Sbjct: 146 RAGI-VHRLDKGTSGAIVVAKNNAAHAALSNQLSDKS 181
>gi|94502329|ref|ZP_01308802.1| ribosomal large subunit pseudouridine synthase D [Candidatus Sulcia
muelleri str. Hc (Homalodisca coagulata)]
gi|94451116|gb|EAT14068.1| ribosomal large subunit pseudouridine synthase D [Candidatus Sulcia
muelleri str. Hc (Homalodisca coagulata)]
Length = 338
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ +FYED+ +I +NK SGL V PG + T++ L + K+ + + P+ VHR+
Sbjct: 102 INIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYNKI---PILVHRI 158
Query: 100 GRGTSGILLCAKTK 113
+GTSG++L AK K
Sbjct: 159 DKGTSGLILVAKDK 172
>gi|380513652|ref|ZP_09857059.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
sacchari NCPPB 4393]
Length = 335
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 27 HRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
H LP D+P LEV YEDD +I LNKP+GL V PG T++ L +R L
Sbjct: 86 HALPE---DIP--LEVLYEDDQVIVLNKPAGLVVHPGAGNPSGTLVNALLYR----DPGL 136
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
S+ + VHRL + TSG ++ A+T A T + A + +
Sbjct: 137 SALPRAGI-VHRLDKDTSGAMVVARTLQAHTSLVAQLSAR 175
>gi|192288803|ref|YP_001989408.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
TIE-1]
gi|192282552|gb|ACE98932.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
TIE-1]
Length = 334
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED D+I LNKP GL V P + T++ L S + P VHRL
Sbjct: 86 LDIVYEDADIIVLNKPRGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VRRPGIVHRL 144
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 145 DKDTTGLMVAAKNDKAHQSLSAQFAD 170
>gi|161833681|ref|YP_001597877.1| ribosomal large subunit pseudouridine synthase D [Candidatus Sulcia
muelleri GWSS]
gi|152206171|gb|ABS30481.1| ribosomal large subunit pseudouridine synthase D [Candidatus Sulcia
muelleri GWSS]
Length = 337
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ +FYED+ +I +NK SGL V PG + T++ L + K+ + + P+ VHR+
Sbjct: 101 INIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYNKI---PILVHRI 157
Query: 100 GRGTSGILLCAKTK 113
+GTSG++L AK K
Sbjct: 158 DKGTSGLILVAKDK 171
>gi|339448356|ref|ZP_08651912.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
fructivorans KCTC 3543]
Length = 305
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD +I +NKP G+ V P T++ L + + SS++ P
Sbjct: 75 DIP--LDIVYEDDQVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--KLSSINGTVR-PG 129
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT +A ++ +KT+
Sbjct: 130 IVHRIDKDTSGLLMVAKTDVAHKSLSKQLKEKTN 163
>gi|317482547|ref|ZP_07941562.1| RNA pseudouridylate synthase [Bifidobacterium sp. 12_1_47BFAA]
gi|316915969|gb|EFV37376.1| RNA pseudouridylate synthase [Bifidobacterium sp. 12_1_47BFAA]
Length = 254
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++V YED+ +I ++KP L +P G++ ++T L +L+ R + +
Sbjct: 4 EPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDIT------- 56
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P HRL R T+G+L+ + + F ++ +V
Sbjct: 57 --PAHRLDRMTAGVLVFVRDPACRGAYQMLFQNRQTV 91
>gi|357238999|ref|ZP_09126335.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
gi|356752721|gb|EHI69846.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
Length = 299
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K D+P L++ YEDD L +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAEDIP--LDIIYEDDALAIVNKPQGMVVHPSAGHASGTMVNALMYHI-KNLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AKT A +A K S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKTDKAHHHLAEELKAKKSL 161
>gi|418246012|ref|ZP_12872409.1| ribosomal pseudouridine synthase [Corynebacterium glutamicum ATCC
14067]
gi|354509557|gb|EHE82489.1| ribosomal pseudouridine synthase [Corynebacterium glutamicum ATCC
14067]
Length = 322
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P E +PY + V +EDDD++ ++KP L +P G T L ++ R ++
Sbjct: 81 FYRMPAAERPIPYKIHVIHEDDDILVIDKPPYLATMPRGRHITETAL--VKMRVLTGNND 138
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L+ P HRL R TSG+L+ K + FA + +
Sbjct: 139 LT-------PAHRLDRLTSGVLVMVKKPELRGAYQTLFARREA 174
>gi|326405195|ref|YP_004285277.1| ribosomal large subunit pseudouridine synthase D [Acidiphilium
multivorum AIU301]
gi|325052057|dbj|BAJ82395.1| ribosomal large subunit pseudouridine synthase D [Acidiphilium
multivorum AIU301]
Length = 332
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YED DLI ++KP+GL V P T++ L + + + P VHRL
Sbjct: 89 LTVLYEDSDLIVIDKPAGLVVHPAPGNPDGTLVNALIAHCGDSLAGIGGE-RRPGIVHRL 147
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+++ AKT+LA ++A FA +
Sbjct: 148 DKDTSGVMVAAKTELALNALSAAFAAR 174
>gi|363419724|ref|ZP_09307822.1| pseudouridine synthase [Rhodococcus pyridinivorans AK37]
gi|359736831|gb|EHK85770.1| pseudouridine synthase [Rhodococcus pyridinivorans AK37]
Length = 321
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 19 GAGSELVYHRLPW-------KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 71
G G+EL HR W +EP VP+ E+ + DDDL+ ++KP L PGG + + +
Sbjct: 63 GRGTELGEHRFVWYYRDLPVEEP-VPFHEEILHIDDDLVVVDKPHFLPTTPGGRYLRESA 121
Query: 72 LKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L +L+ R + P+HRL R T+G+++ + + + F +
Sbjct: 122 LVRLRTRLDNPDLT---------PIHRLDRATAGLVMFSARPETRGAYQSLFEKR 167
>gi|256819393|ref|YP_003140672.1| RluA family pseudouridine synthase [Capnocytophaga ochracea DSM
7271]
gi|429747432|ref|ZP_19280700.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
380 str. F0488]
gi|256580976|gb|ACU92111.1| pseudouridine synthase, RluA family [Capnocytophaga ochracea DSM
7271]
gi|429163142|gb|EKY05394.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
380 str. F0488]
Length = 352
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDD L+ +NKP+G+ V PG T++ L + ++ S++ P VHR+
Sbjct: 104 LNIVYEDDSLLVVNKPAGMVVHPGHGNYSGTLINALVYHFENLPNNSSNR---PGLVHRI 160
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A + F +KT+
Sbjct: 161 DKDTSGLLVVAKTEEAMLHLTQQFFNKTT 189
>gi|108758129|ref|YP_629362.1| RNA pseudouridine synthase [Myxococcus xanthus DK 1622]
gi|108462009|gb|ABF87194.1| RNA pseudouridine synthase family protein [Myxococcus xanthus DK
1622]
Length = 329
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
+EPD P L V ++DD L+ L+KP+GL + P + + T++ L+ R ++ +
Sbjct: 80 EEPDTPTELPVVFQDDWLLVLDKPAGLPIHPTARYHKGTLVTLLRERFGERFAE------ 133
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P HRL R TSG+++C +T + + F +
Sbjct: 134 ---PAHRLDRETSGLVVCGRTTESCRVLGRLFVSR 165
>gi|19554131|ref|NP_602133.1| 23S RNA-specific pseudouridylate synthase [Corynebacterium
glutamicum ATCC 13032]
gi|21325718|dbj|BAC00339.1| Pseudouridylate synthases, 23S RNA-specific [Corynebacterium
glutamicum ATCC 13032]
gi|385145025|emb|CCH26064.1| 23S RNA-specific pseudouridylate synthase [Corynebacterium
glutamicum K051]
Length = 322
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P E +PY + V +EDDD++ ++KP L +P G T L ++ R ++
Sbjct: 81 FYRMPAAERPIPYKIHVIHEDDDILVIDKPPYLATMPRGRHITETAL--VKMRVLTGNND 138
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L+ P HRL R TSG+L+ K + FA + +
Sbjct: 139 LT-------PAHRLDRLTSGVLVMVKKPELRGAYQTLFARREA 174
>gi|420149235|ref|ZP_14656414.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
335 str. F0486]
gi|394753991|gb|EJF37459.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
335 str. F0486]
Length = 352
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDD L+ +NKP+G+ V PG T++ L + ++ S++ P VHR+
Sbjct: 104 LNIVYEDDSLLVVNKPAGMVVHPGHGNYSGTLINALVYHFENLPNNSSNR---PGLVHRI 160
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A + F +KT+
Sbjct: 161 DKDTSGLLVVAKTEEAMLHLTQQFFNKTT 189
>gi|417972385|ref|ZP_12613292.1| ribosomal pseudouridine synthase [Corynebacterium glutamicum S9114]
gi|344043353|gb|EGV39050.1| ribosomal pseudouridine synthase [Corynebacterium glutamicum S9114]
Length = 322
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P E +PY + V +EDDD++ ++KP L +P G T L ++ R ++
Sbjct: 81 FYRMPAAERPIPYKIHVIHEDDDILVIDKPPYLATMPRGRHITETAL--VKMRVLTGNND 138
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L+ P HRL R TSG+L+ K + FA + +
Sbjct: 139 LT-------PAHRLDRLTSGVLVMVKKPELRGAYQTLFARREA 174
>gi|227547691|ref|ZP_03977740.1| ribosomal pseudouridine synthase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227080217|gb|EEI18180.1| ribosomal pseudouridine synthase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 323
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G+++ ++R P E VPY +E YEDD ++ ++KP L +P + +L R +
Sbjct: 82 GTDVFFYRRPAPEKPVPYDIETVYEDDTILVVDKPPFLATMPRAAHITESATVRL--RRA 139
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+ L+ P HRL R TSG+LL K K ++ FA
Sbjct: 140 TGNEDLT-------PAHRLDRMTSGLLLLTKQKQHRSAYQELFA 176
>gi|224534885|ref|ZP_03675454.1| ribosomal large subunit pseudouridine synthase D [Borrelia
spielmanii A14S]
gi|224513825|gb|EEF84150.1| ribosomal large subunit pseudouridine synthase D [Borrelia
spielmanii A14S]
Length = 328
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDPNIIVLNKPQGILSHPGISHWDDTVVNFLLYHIKGLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+L+CAK +A F DK
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDK 170
>gi|148261702|ref|YP_001235829.1| RluA family pseudouridine synthase [Acidiphilium cryptum JF-5]
gi|146403383|gb|ABQ31910.1| ribosomal large subunit pseudouridine synthase D [Acidiphilium
cryptum JF-5]
Length = 332
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YED DLI ++KP+GL V P T++ L + + + P VHRL
Sbjct: 89 LTVLYEDSDLIVIDKPAGLVVHPAPGNPDGTLVNALIAHCGDSLAGIGGE-RRPGIVHRL 147
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG+++ AKT+LA ++A FA +
Sbjct: 148 DKDTSGVMVAAKTELALNALSAAFAAR 174
>gi|354808142|ref|ZP_09041581.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
gi|354513374|gb|EHE85382.1| pseudouridine synthase, RluA family protein [Lactobacillus curvatus
CRL 705]
Length = 280
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
V YEDDDL+ +NKP+G++ P G + T++ Q+ ++ L+ Q VHR+
Sbjct: 67 FSVLYEDDDLLVVNKPAGIKTHPNGPGENFTLMNQV-------AAYLAKQDKKAYMVHRI 119
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+LL KT + + + KT
Sbjct: 120 DQATSGVLLIGKTPIVIGILNRQLSQKT 147
>gi|336395530|ref|ZP_08576929.1| pseudouridine synthase [Lactobacillus farciminis KCTC 3681]
Length = 304
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
++V YEDDD++ +NKP G+ V P +T++ + + + P VHR+
Sbjct: 85 IDVVYEDDDVLVVNKPQGMVVHPAAGHPDKTLVNAILYHCQINDDDMIR----PGIVHRI 140
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AK LAK + +K+++
Sbjct: 141 DKDTSGLLMIAKNNLAKQSLMKQLKEKSNL 170
>gi|305680267|ref|ZP_07403075.1| RNA pseudouridine synthase [Corynebacterium matruchotii ATCC 14266]
gi|305659798|gb|EFM49297.1| RNA pseudouridine synthase [Corynebacterium matruchotii ATCC 14266]
Length = 339
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGG--LFQQRTVLKQLQW 77
A E+ ++R+P E VPY E +ED+ L+ ++KP L +P G + Q TV Q
Sbjct: 93 ANQEVWFYRIPAPEVPVPYRCETIFEDERLLVVDKPPFLATMPRGKHITQSATV----QL 148
Query: 78 RASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
R + LS P HRL R TSG+L+ KT+ + FA + +
Sbjct: 149 RKLTGNGELS-------PAHRLDRLTSGVLVFTKTREVRGAYQQLFARREA 192
>gi|196228386|ref|ZP_03127253.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
gi|196227789|gb|EDY22292.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
Length = 302
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V +EDDDLI +NKP+GL V P TV+ L S Q P VHRL
Sbjct: 80 LDVLFEDDDLIVINKPAGLVVHPAAGNWSGTVVNALLHHCQTLSGIGGEQ--RPGIVHRL 137
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG L+ AK A +A FA +
Sbjct: 138 DKDTSGCLVVAKNDAAHQSLAKQFAGR 164
>gi|145296955|ref|YP_001139776.1| hypothetical protein cgR_2855 [Corynebacterium glutamicum R]
gi|140846875|dbj|BAF55874.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 322
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
++R+P E +PY + V +EDDD++ ++KP L +P G T L ++ R ++
Sbjct: 81 FYRMPAAERPIPYKIHVIHEDDDILVIDKPPYLATMPRGRHITETAL--VKMRVLTGNND 138
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L+ P HRL R TSG+L+ K + FA + +
Sbjct: 139 LT-------PAHRLDRLTSGVLVMVKKPELRGAYQTLFARREA 174
>gi|255690880|ref|ZP_05414555.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
finegoldii DSM 17565]
gi|260623516|gb|EEX46387.1| pseudouridine synthase, RluA family [Bacteroides finegoldii DSM
17565]
Length = 561
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YED+ L+ +NKP+G+ +PG + +V +L+ + A+ P+ VHRL
Sbjct: 348 LEIVYEDEWLVVVNKPAGMLSVPGKEEDRDSVYHRLKKK--------YPDATGPMIVHRL 399
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK + A FA ++
Sbjct: 400 DMATSGLLLVAKTKEVHQHLQAQFASRS 427
>gi|88802386|ref|ZP_01117913.1| ribosomal large subunit pseudouridine synthase D [Polaribacter
irgensii 23-P]
gi|88781244|gb|EAR12422.1| ribosomal large subunit pseudouridine synthase D [Polaribacter
irgensii 23-P]
Length = 346
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDD +I +NKP+G+ V PG T++ L ++ + + P
Sbjct: 92 DIP--LDIIYEDDTVIVVNKPAGMVVHPGHGNYSGTLVNGLIHHIENLPTNSNER---PG 146
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AKT+ A ++ F ++T+
Sbjct: 147 LVHRIDKDTSGLLVVAKTEFAMANLSRQFFERTT 180
>gi|170692348|ref|ZP_02883511.1| pseudouridine synthase, RluA family [Burkholderia graminis C4D1M]
gi|170142778|gb|EDT10943.1| pseudouridine synthase, RluA family [Burkholderia graminis C4D1M]
Length = 450
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLF 66
K + PL GA ELV LP + P+ P LE+ YEDD L+ +NKP+G+ V P
Sbjct: 112 KIRQPVPL-GATIELVPDLLPEQLAFTPE-PVPLEIVYEDDTLVVINKPAGMVVHPAAGN 169
Query: 67 QQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
TVL L +R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 170 WSGTVLNGLLYRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLEAQT 216
>gi|209550662|ref|YP_002282579.1| pseudouridine synthase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424917077|ref|ZP_18340441.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209536418|gb|ACI56353.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392853253|gb|EJB05774.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 341
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +ED+DLI ++KPSGL V PG T++ L S + P
Sbjct: 87 DIP--LDILHEDEDLIVISKPSGLVVHPGSGNWTGTLVNALIHHCGDTLSGIGG-VRRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 144 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 174
>gi|294786018|ref|ZP_06751305.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_27]
gi|294486355|gb|EFG33718.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_27]
Length = 316
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YE+DD I +NK G+ V P T++ L + + SS + P +HRL
Sbjct: 85 LDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLYYTNNLSSI--NGNIRPGIIHRL 142
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG++L AK A +A+ F DKT
Sbjct: 143 DKDTSGLILVAKNNYAHAKLASMFTDKT 170
>gi|171320446|ref|ZP_02909479.1| pseudouridine synthase, RluA family [Burkholderia ambifaria MEX-5]
gi|171094306|gb|EDT39380.1| pseudouridine synthase, RluA family [Burkholderia ambifaria MEX-5]
Length = 369
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 2 TLIEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGL 58
LI+ K + PL GA ELV LP + P+ P L+V YEDD L+ +NKP+G+
Sbjct: 54 VLIDGAPAKIRQPVPL-GARIELVPDLLPEQLAFTPE-PVPLDVIYEDDALLVINKPAGV 111
Query: 59 QVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118
V P T+L L R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 112 VVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQTD 167
Query: 119 IAAYFADKT 127
+ +T
Sbjct: 168 LVRQLQART 176
>gi|429755207|ref|ZP_19287876.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
324 str. F0483]
gi|429175438|gb|EKY16881.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
324 str. F0483]
Length = 352
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDD L+ +NKP+G+ V PG T++ L + ++ S++ P VHR+
Sbjct: 104 LNIVYEDDSLLVVNKPAGMVVHPGHGNYSGTLINALVYHFENLPNNSSNR---PGLVHRI 160
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A + F +KT+
Sbjct: 161 DKDTSGLLVVAKTEEAMLHLTQQFFNKTT 189
>gi|341584457|ref|YP_004764948.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia heilongjiangensis 054]
gi|340808682|gb|AEK75270.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia heilongjiangensis 054]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|162148037|ref|YP_001602498.1| ribosomal large subunit pseudouridine synthase D [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786614|emb|CAP56196.1| putative ribosomal large subunit pseudouridine synthase D
[Gluconacetobacter diazotrophicus PAl 5]
Length = 295
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 28 RLPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS 83
R+P P P + YED DLI L+KP+GL V P + T++ L
Sbjct: 42 RMPPAIPATPRAQAIPFAILYEDSDLIVLDKPAGLVVHPAPGNEDGTLVNALLAHCGDSL 101
Query: 84 SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + + P VHRL + TSG+++ AKT+ A T ++ FA +
Sbjct: 102 TGIGGE-RRPGIVHRLDKDTSGVMVVAKTEQAHTALSDAFAAR 143
>gi|295425512|ref|ZP_06818204.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
gi|295064803|gb|EFG55719.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
Length = 302
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP G+ V P T++ L + +S S + P VHR+
Sbjct: 79 LDIIYEDNDVIVVNKPQGMVVHPAAGHPDHTLVNALLYHTKDLAS--SPEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK + + A KT+
Sbjct: 137 DKDTSGLLMIAKNSQVRESLEDQLAHKTN 165
>gi|293977792|ref|YP_003543222.1| RluA family pseudouridine synthase [Candidatus Sulcia muelleri
DMIN]
gi|292667723|gb|ADE35358.1| pseudouridine synthase, RluA family [Candidatus Sulcia muelleri
DMIN]
Length = 314
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ +FYED+ +I +NK SGL V PG + T++ L + K+ + + P+ VHR+
Sbjct: 78 INIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYNKI---PILVHRI 134
Query: 100 GRGTSGILLCAKTK 113
+GTSG++L AK K
Sbjct: 135 DKGTSGLILVAKDK 148
>gi|319760323|ref|YP_004124261.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Blochmannia vafer str. BVAF]
gi|318039037|gb|ADV33587.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Blochmannia vafer str. BVAF]
Length = 333
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED+D++ +NKPS + V PG + TVL L +R +S QA V RL
Sbjct: 95 LNIVYEDNDILVINKPSNMVVHPGVKNNKDTVLNALLYRYP-SIMQISKQAG---IVQRL 150
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSVVDAD 133
+ T+G+++ AKT LA T + F K + + D
Sbjct: 151 DKDTTGLMIIAKTYLAYTNLLQSFKMKQVIKEYD 184
>gi|15893233|ref|NP_360947.1| pseudouridylate synthase [Rickettsia conorii str. Malish 7]
gi|15620450|gb|AAL03848.1| sfhB protein homolog [Rickettsia conorii str. Malish 7]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|410031141|ref|ZP_11280971.1| RluA family pseudouridine synthase [Marinilabilia sp. AK2]
Length = 383
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L++ YEDD L+ +NKP+G+ V P T++ L + + Q +L P V
Sbjct: 132 PIPLDIVYEDDHLLVVNKPAGMVVHPAHGNWSGTLVNGLVYYFN-QLPTLPGNTGRPGLV 190
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYF 123
HR+ + TSG+L+ AK++LA T +A F
Sbjct: 191 HRIDKDTSGLLVIAKSELAMTELANQF 217
>gi|421144716|ref|ZP_15604623.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
gi|395488855|gb|EJG09703.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
Length = 314
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP--VH 97
L++ YE+DD I +NK G+ V P T++ L + +++LSS + P +H
Sbjct: 85 LDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLY----YTNNLSSINGNIRPGIIH 140
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
RL + TSG++L AK A +A+ F DKT
Sbjct: 141 RLDKDTSGLILVAKNNYAHAKLASMFTDKT 170
>gi|379714229|ref|YP_005302567.1| ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia massiliae str. AZT80]
gi|376334875|gb|AFB32107.1| ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia massiliae str. AZT80]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|416909206|ref|ZP_11931285.1| RluA family pseudouridine synthase [Burkholderia sp. TJI49]
gi|325528651|gb|EGD05737.1| RluA family pseudouridine synthase [Burkholderia sp. TJI49]
Length = 359
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 4 IEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQV 60
I+ K + PL GA ELV LP + P+ P L+V YEDD L+ +NKP+GL V
Sbjct: 56 IDGAPAKIRQPVPL-GATIELVPDLLPEQLAFTPE-PVPLDVVYEDDALVVINKPAGLVV 113
Query: 61 LPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
P T+L L R ++ L VHRL + TSG+++ A+T A+T +
Sbjct: 114 HPAAGNWSGTILNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQTDLV 169
Query: 121 AYFADKT 127
+T
Sbjct: 170 RQLQART 176
>gi|385813705|ref|YP_005850098.1| Pseudouridine synthase [Lactobacillus helveticus H10]
gi|323466424|gb|ADX70111.1| Pseudouridine synthase [Lactobacillus helveticus H10]
Length = 310
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP G+ V P T++ L + Q + S + P VHR+
Sbjct: 86 LDIVYEDEDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--QDLAQSPEGFRPGIVHRI 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A KT+
Sbjct: 144 DKDTSGLLMIAKNAKARESLEDQLAHKTN 172
>gi|237740892|ref|ZP_04571373.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
4_1_13]
gi|229431189|gb|EEO41401.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
4_1_13]
Length = 314
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP--VH 97
L++ YE+DD I +NK G+ V P T++ L + +++LSS + P +H
Sbjct: 85 LDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLY----YTNNLSSINGNIRPGIIH 140
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
RL + TSG++L AK A +A+ F DKT
Sbjct: 141 RLDKDTSGLILVAKNNYAHAKLASMFTDKT 170
>gi|209542655|ref|YP_002274884.1| RluA family pseudouridine synthase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530332|gb|ACI50269.1| pseudouridine synthase, RluA family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 322
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 28 RLPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS 83
R+P P P + YED DLI L+KP+GL V P + T++ L
Sbjct: 69 RMPPAIPATPRAQAIPFAILYEDSDLIVLDKPAGLVVHPAPGNEDGTLVNALLAHCGDSL 128
Query: 84 SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + + P VHRL + TSG+++ AKT+ A T ++ FA +
Sbjct: 129 TGIGGE-RRPGIVHRLDKDTSGVMVVAKTEQAHTALSDAFAAR 170
>gi|170703044|ref|ZP_02893871.1| pseudouridine synthase, RluA family [Burkholderia ambifaria
IOP40-10]
gi|170132052|gb|EDT00553.1| pseudouridine synthase, RluA family [Burkholderia ambifaria
IOP40-10]
Length = 365
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 2 TLIEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGL 58
LI+ K + PL GA ELV LP + P+ P L+V YEDD L+ +NKP+G+
Sbjct: 54 VLIDGAPAKIRQPVPL-GARIELVPDLLPEQLAFTPE-PVPLDVIYEDDALLVINKPAGV 111
Query: 59 QVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118
V P T+L L R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 112 VVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQTD 167
Query: 119 IAAYFADKT 127
+ +T
Sbjct: 168 LVRQLQART 176
>gi|383482760|ref|YP_005391674.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
montanensis str. OSU 85-930]
gi|378935114|gb|AFC73615.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
montanensis str. OSU 85-930]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|157964996|ref|YP_001499820.1| ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia massiliae MTU5]
gi|157844772|gb|ABV85273.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia massiliae MTU5]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|336392300|ref|ZP_08573699.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
gi|420146122|ref|ZP_14653559.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402202|gb|EJN55574.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 304
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP G+ V P Q T++ L + + S + P VHR+
Sbjct: 80 LDIVYEDDDVLVVNKPQGMVVHPAPGHPQDTLVNALLYHS---PLSTINGVIRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A +AA KTS
Sbjct: 137 DKDTSGLLMVAKNDQAHISLAAQLQAKTS 165
>gi|238651091|ref|YP_002916949.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
peacockii str. Rustic]
gi|383484602|ref|YP_005393515.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
parkeri str. Portsmouth]
gi|238625189|gb|ACR47895.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
peacockii str. Rustic]
gi|378936956|gb|AFC75456.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
parkeri str. Portsmouth]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|170752009|ref|YP_001758269.1| RluA family pseudouridine synthase [Methylobacterium radiotolerans
JCM 2831]
gi|170658531|gb|ACB27586.1| pseudouridine synthase, RluA family [Methylobacterium radiotolerans
JCM 2831]
Length = 334
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDDLI ++KP+GL V P + T++ L S + P VHRL
Sbjct: 84 LPIVYEDDDLIVIDKPAGLVVHPAPGHESGTLVNALIAHCGASLSGIGG-VRRPGIVHRL 142
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+++ AK A + A FAD
Sbjct: 143 DKDTSGLIVVAKNDTAHQGLTAQFAD 168
>gi|229587213|ref|YP_002845714.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia africae ESF-5]
gi|228022263|gb|ACP53971.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia africae ESF-5]
Length = 313
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|39933445|ref|NP_945721.1| pseudouridine synthase [Rhodopseudomonas palustris CGA009]
gi|39647291|emb|CAE25812.1| possible pseudouridine synthases [Rhodopseudomonas palustris
CGA009]
Length = 407
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED D+I LNKP GL V P + T++ L S + P VHRL
Sbjct: 159 LDIVYEDADIIVLNKPRGLVVHPAAGHETGTLVNALIAHCGASLSGIGG-VRRPGIVHRL 217
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++A FAD
Sbjct: 218 DKDTTGLMVAAKNDKAHQSLSAQFAD 243
>gi|160933118|ref|ZP_02080507.1| hypothetical protein CLOLEP_01961 [Clostridium leptum DSM 753]
gi|156868192|gb|EDO61564.1| pseudouridine synthase, RluA family [Clostridium leptum DSM 753]
Length = 306
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 18 QGAGSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTV 71
+G + V R+P EP +VP L++ YEDDDL+ +NKP G+ V P Q T+
Sbjct: 55 KGRAGDSVALRIPDPEPLCLQAENVP--LDIVYEDDDLLVVNKPQGMVVHPAPGNYQGTL 112
Query: 72 LKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
+ L S ++ P VHR+ + TSG+L+ AK A +A
Sbjct: 113 VNALLAHCGNSLSGING-VIRPGIVHRIDKDTSGLLMVAKNDFAHQGLA 160
>gi|397171180|ref|ZP_10494589.1| pseudouridylate synthase [Alishewanella aestuarii B11]
gi|396087079|gb|EJI84680.1| pseudouridylate synthase [Alishewanella aestuarii B11]
Length = 215
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L ++ P PYL ++ Y+DD L+ LNKPSGL +PG + LQ+R + +
Sbjct: 3 LDYRPPLSPYL-DILYQDDQLVVLNKPSGLLSVPGKAAEH---FDSLQYRVQR----VWP 54
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
QAS VHRL TSG+++ A TK A+ + F+++T
Sbjct: 55 QAS---VVHRLDMATSGLMVMALTKEAQRELNRQFSERT 90
>gi|392552358|ref|ZP_10299495.1| pseudouridylate synthase [Pseudoalteromonas spongiae UST010723-006]
Length = 217
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + P PY+ + Y DDDLI LNKPSGL +PG +A + SL +
Sbjct: 3 LNYNPPTSPYI-NILYRDDDLIILNKPSGLLTVPG--------------KALEHKDSLIN 47
Query: 89 QASHPVP----VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ + P VHRL TSGI+ A K A I+ F D+ +
Sbjct: 48 RVNLVFPSATIVHRLDMATSGIICLALNKAAHREISRQFQDRET 91
>gi|383450573|ref|YP_005357294.1| 23S rRNA pseudouridine synthase [Flavobacterium indicum GPTSA100-9]
gi|380502195|emb|CCG53237.1| Probable 23S rRNA pseudouridine synthase [Flavobacterium indicum
GPTSA100-9]
Length = 344
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K ++P +++ YED+ ++ +NKP+G+ V PG T++ L + + S +
Sbjct: 89 KGENIP--IDIVYEDEQVLVVNKPAGMVVHPGHGNYSGTLVNALAYHFDNLPMNSSER-- 144
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHR+ + TSG+L+ AKT+ A + FA+KTS
Sbjct: 145 -PGLVHRIDKDTSGLLVVAKTEHAMNHLTKQFAEKTS 180
>gi|312133201|ref|YP_004000540.1| rlua2 [Bifidobacterium longum subsp. longum BBMN68]
gi|322690629|ref|YP_004220199.1| ribosomal pseudouridine synthase [Bifidobacterium longum subsp.
longum JCM 1217]
gi|311772402|gb|ADQ01890.1| RluA2 [Bifidobacterium longum subsp. longum BBMN68]
gi|320455485|dbj|BAJ66107.1| putative ribosomal pseudouridine synthase [Bifidobacterium longum
subsp. longum JCM 1217]
Length = 254
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++V YED+ +I ++KP L +P G++ ++T L +L+ R + +
Sbjct: 4 EPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDIT------- 56
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P HRL R T+G+L+ + + F ++ +V
Sbjct: 57 --PAHRLDRMTAGVLVFVRDPACRGAYQMLFQNRQAV 91
>gi|256846833|ref|ZP_05552288.1| pseudouridylate synthase [Fusobacterium sp. 3_1_36A2]
gi|256717799|gb|EEU31357.1| pseudouridylate synthase [Fusobacterium sp. 3_1_36A2]
Length = 316
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP--VH 97
L++ YE+DD I +NK G+ V P T++ L + +++LSS + P +H
Sbjct: 85 LDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNALLY----YTNNLSSINGNIRPGIIH 140
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
RL + TSG++L AK A +A+ F DKT
Sbjct: 141 RLDKDTSGLILVAKNNYAHAKLASMFTDKT 170
>gi|227892505|ref|ZP_04010310.1| pseudouridylate synthase [Lactobacillus ultunensis DSM 16047]
gi|227865626|gb|EEJ73047.1| pseudouridylate synthase [Lactobacillus ultunensis DSM 16047]
Length = 305
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + + S + P VHR+
Sbjct: 79 LDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLYHT--KDLAQSPEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A KT+
Sbjct: 137 DKDTSGLLMIAKNAKARESLEDQLAHKTN 165
>gi|392951752|ref|ZP_10317307.1| putative pseudouridylate synthase [Hydrocarboniphaga effusa AP103]
gi|391860714|gb|EIT71242.1| putative pseudouridylate synthase [Hydrocarboniphaga effusa AP103]
Length = 290
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG + Y R EP +P+ + + D+ L+ ++KP L +P G F + ++L +L
Sbjct: 61 AGQVVRYFREVEHEPRIPFEANILHRDEHLLVVDKPHFLPTVPAGRFVRESLLMRL---- 116
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
K ++ L S A P+HRL R T+G++L + + ++ +A FA++
Sbjct: 117 -KLATGLGSLA----PLHRLDRETAGLVLFSIDERSRAAYSALFAER 158
>gi|315224831|ref|ZP_07866652.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
ochracea F0287]
gi|420159957|ref|ZP_14666751.1| pseudouridine synthase, RluA family [Capnocytophaga ochracea str.
Holt 25]
gi|314945234|gb|EFS97262.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
ochracea F0287]
gi|394761346|gb|EJF43724.1| pseudouridine synthase, RluA family [Capnocytophaga ochracea str.
Holt 25]
Length = 352
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDD L+ +NKP+G+ V PG T++ L + ++ S++ P VHR+
Sbjct: 104 LNIVYEDDSLLVVNKPAGIVVHPGHGNYSGTLINALVYHFENLPNNSSNR---PGLVHRI 160
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A + F +KT+
Sbjct: 161 DKDTSGLLVVAKTEEAMLHLTQQFFNKTT 189
>gi|160887288|ref|ZP_02068291.1| hypothetical protein BACOVA_05306 [Bacteroides ovatus ATCC 8483]
gi|156107699|gb|EDO09444.1| pseudouridine synthase, RluA family [Bacteroides ovatus ATCC 8483]
Length = 564
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YED+ L+ +NKP+G+ +PG + +V +L+ + A+ P+ VHRL
Sbjct: 348 LEIVYEDEWLVVVNKPAGMLSVPGKEEDRDSVYHRLKKK--------YPDATGPMIVHRL 399
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK + A FA ++
Sbjct: 400 DMATSGLLLVAKTKEVHQHLQAQFASRS 427
>gi|89067930|ref|ZP_01155374.1| ribosomal large subunit pseudouridine synthase D [Oceanicola
granulosus HTCC2516]
gi|89046528|gb|EAR52584.1| ribosomal large subunit pseudouridine synthase D [Oceanicola
granulosus HTCC2516]
Length = 341
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L+V YEDD+LI +NKP+G+ V P T++ L + S + P V
Sbjct: 82 PIPLDVVYEDDELIVINKPAGMVVHPAPGSPDGTLVNALIHHCGESLSGVGG-LRRPGIV 140
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYF 123
HR+ + TSG+L+ AKT A +AA F
Sbjct: 141 HRIDKDTSGLLVAAKTDRAHHGLAAQF 167
>gi|34581099|ref|ZP_00142579.1| sfhB protein homolog [Rickettsia sibirica 246]
gi|28262484|gb|EAA25988.1| sfhB protein homolog [Rickettsia sibirica 246]
Length = 313
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|374319827|ref|YP_005066326.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca 13-B]
gi|383751920|ref|YP_005427021.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca str. D-CWPP]
gi|360042376|gb|AEV92758.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca 13-B]
gi|379774934|gb|AFD20290.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca str. D-CWPP]
Length = 313
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHHTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|319637809|ref|ZP_07992575.1| pseudouridine synthase [Neisseria mucosa C102]
gi|317400964|gb|EFV81619.1| pseudouridine synthase [Neisseria mucosa C102]
Length = 307
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 21 GSELVYHRLPWKE--PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWR 78
G + Y+R +E P +P+ ++ + D+ L+ ++KP L V+P G F + T+L +L+ R
Sbjct: 74 GKTMFYYRETSRESEPRIPFDEKILHIDEHLLVVDKPHFLPVIPSGRFLRETLLTRLRLR 133
Query: 79 ASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q ++ P+HRL + T+G++L + + F +KT
Sbjct: 134 PELQHLNVEDIT----PIHRLDKDTAGVMLLSLNPATRRDYQTMFQEKT 178
>gi|253576153|ref|ZP_04853485.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844496|gb|EES72512.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 315
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 13 NSAPLQG----AGSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLP 62
N AP++ A + + +P EP D+P LE++YED D+I +NKP G+ V P
Sbjct: 57 NGAPVKANYKLAEGDRIVLVIPEAEPTEIVPEDIP--LEIYYEDSDVIVVNKPRGMVVHP 114
Query: 63 GGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
T++ L + K S ++ + P VHR+ + TSG+++ AK A +AA
Sbjct: 115 APGHTSGTLVNALMFHC-KDLSGINGELR-PGIVHRIDKDTSGLIMAAKNDKAHASLAA 171
>gi|189439795|ref|YP_001954876.1| 23S RNA-specific pseudouridylate synthase [Bifidobacterium longum
DJO10A]
gi|189428230|gb|ACD98378.1| 23S RNA-specific pseudouridylate synthase [Bifidobacterium longum
DJO10A]
Length = 254
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++V YED+ +I ++KP L +P G++ ++T L +L+ R + +
Sbjct: 4 EPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDIT------- 56
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P HRL R T+G+L+ + + F ++ +V
Sbjct: 57 --PAHRLDRMTAGVLVFVRDPACRGAYQMLFQNRQAV 91
>gi|333394895|ref|ZP_08476714.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
Length = 304
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP G+ V P Q T++ L + + S + P VHR+
Sbjct: 80 LDIVYEDDDVLVVNKPQGMVVHPAPGHPQDTLVNALLYHS---PLSTINGVIRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A +AA KTS
Sbjct: 137 DKDTSGLLMVAKNDQAHISLAAQLQAKTS 165
>gi|255520401|ref|ZP_05387638.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL J1-175]
Length = 202
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 70 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|256824745|ref|YP_003148705.1| 23S RNA-specific pseudouridylate synthase [Kytococcus sedentarius
DSM 20547]
gi|256688138|gb|ACV05940.1| 23S RNA-specific pseudouridylate synthase [Kytococcus sedentarius
DSM 20547]
Length = 316
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP+VP L V D+ + ++KP L +P G+ Q+TV+ +++
Sbjct: 79 EPEVPGGLPVLQADEHCVVVDKPPFLATIPRGVHVQQTVVARVR-----------EDFPE 127
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VPVHRL R TSG+LLCA+T A+ + F +
Sbjct: 128 AVPVHRLDRLTSGVLLCARTPEARRPLQQLFEKR 161
>gi|296453676|ref|YP_003660819.1| pseudouridine synthase [Bifidobacterium longum subsp. longum
JDM301]
gi|322688643|ref|YP_004208377.1| ribosomal pseudouridine synthase [Bifidobacterium longum subsp.
infantis 157F]
gi|384201999|ref|YP_005587746.1| ribosomal pseudouridine synthase [Bifidobacterium longum subsp.
longum KACC 91563]
gi|296183107|gb|ADG99988.1| pseudouridine synthase [Bifidobacterium longum subsp. longum
JDM301]
gi|320459979|dbj|BAJ70599.1| putative ribosomal pseudouridine synthase [Bifidobacterium longum
subsp. infantis 157F]
gi|338755006|gb|AEI97995.1| ribosomal pseudouridine synthase [Bifidobacterium longum subsp.
longum KACC 91563]
Length = 254
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++V YED+ +I ++KP L +P G++ ++T L +L+ R + +
Sbjct: 4 EPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDIT------- 56
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P HRL R T+G+L+ + + F ++ +V
Sbjct: 57 --PAHRLDRMTAGVLVFVRDSACRGAYQMLFQNRQAV 91
>gi|16801409|ref|NP_471677.1| hypothetical protein lin2346 [Listeria innocua Clip11262]
gi|422413803|ref|ZP_16490762.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL S4-378]
gi|423099149|ref|ZP_17086857.1| pseudouridine synthase, RluA family [Listeria innocua ATCC 33091]
gi|16414869|emb|CAC97573.1| lin2346 [Listeria innocua Clip11262]
gi|313617601|gb|EFR89910.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL S4-378]
gi|370794384|gb|EHN62159.1| pseudouridine synthase, RluA family [Listeria innocua ATCC 33091]
Length = 289
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP G++ ++ T +Q+ K + Q +
Sbjct: 70 KIPVYEYDLEIIYEDDFLLVVNKPVGMKTHANDSYETDTCANAVQYYLEK-----TGQEA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|421527424|ref|ZP_15974026.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum ChDC F128]
gi|402256459|gb|EJU06939.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum ChDC F128]
Length = 314
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP ++P L+V YE++D I +NK G+ V P T++ L + + SS +
Sbjct: 79 EPENIP--LDVIYENEDFIVINKSYGMVVHPAYGNYSGTLVNALLYYTNNLSSV--NGNI 134
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P +HRL + TSG++L AK A +A+ F DKT
Sbjct: 135 RPGIIHRLDKDTSGLILVAKNNFAHAKLASMFIDKT 170
>gi|399066658|ref|ZP_10748517.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
gi|398027820|gb|EJL21351.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
Length = 314
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V +ED+ LI ++KP+GL V P T++ L Q S + A P
Sbjct: 79 DIP--LNVVFEDEYLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCRGQLSGIGGVAR-PG 135
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AKT A +A FAD + V
Sbjct: 136 IVHRIDKDTSGLLVVAKTDKAHEGLAVQFADHSIV 170
>gi|254467318|ref|ZP_05080729.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium Y4I]
gi|206688226|gb|EDZ48708.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium Y4I]
Length = 341
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LE+ +EDDDLI +NKP+G+ V P T++ L S + P
Sbjct: 82 DIP--LEIVFEDDDLIVINKPAGMVVHPAPGSPSGTLVNALLHHFGGNLSGVGG-VKRPG 138
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK+ A +AA F T
Sbjct: 139 IVHRIDKETSGLLVVAKSDAAHQGLAAQFEKHT 171
>gi|397170711|ref|ZP_10494122.1| pseudouridine synthase [Alishewanella aestuarii B11]
gi|396087632|gb|EJI85231.1| pseudouridine synthase [Alishewanella aestuarii B11]
Length = 331
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 23 ELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
L Y R EP +P+L ++ Y+D+ L+ +KP L V PGG F +L++L K+
Sbjct: 104 RLCYFREVAAEPKIPFLHQILYQDEHLLVADKPHFLPVTPGGDFVNECLLQRL-----KE 158
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
+ +S A P+HRL R T+G++L + +++
Sbjct: 159 DTGISDLA----PLHRLDRDTAGLVLFSCNSISR 188
>gi|375109150|ref|ZP_09755400.1| pseudouridine synthase [Alishewanella jeotgali KCTC 22429]
gi|374570709|gb|EHR41842.1| pseudouridine synthase [Alishewanella jeotgali KCTC 22429]
Length = 331
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 23 ELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQ 82
L Y R EP +P+L ++ Y+D+ L+ +KP L V PGG F +L++L K+
Sbjct: 104 RLCYFREVAAEPKIPFLHQILYQDEHLLVADKPHFLPVTPGGDFVNECLLQRL-----KE 158
Query: 83 SSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
+ +S A P+HRL R T+G++L + +++
Sbjct: 159 DTGISDLA----PLHRLDRDTAGLVLFSCNSISR 188
>gi|118581597|ref|YP_902847.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118504307|gb|ABL00790.1| ribosomal large subunit pseudouridine synthase D [Pelobacter
propionicus DSM 2379]
Length = 315
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV YED DLI +NKP+G+ V PG T++ L + S P VHRL
Sbjct: 77 LEVLYEDGDLIVINKPAGMVVHPGPGNSSGTLVNALLAHCTDLSG--IGGELRPGIVHRL 134
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFA 124
+GTSG+++ AK + ++A F+
Sbjct: 135 DKGTSGVMVVAKNDRSHQALSAQFS 159
>gi|341616031|ref|ZP_08702900.1| pseudouridine synthase D large subunit [Citromicrobium sp. JLT1363]
Length = 412
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L V YED+ LI ++KP+G+ V P + T++ L + Q S ++
Sbjct: 172 EPQDIP--LVVAYEDEHLIVVDKPAGMVVHPAAGNRDGTLVNALLHHCAGQLSGING-VE 228
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ + TSG+L+ AKT A +A FAD +
Sbjct: 229 RPGIVHRIDKDTSGLLVVAKTDSAHEGLAKQFADHS 264
>gi|422416786|ref|ZP_16493743.1| ribosomal large subunit pseudouridine synthase D, partial [Listeria
innocua FSL J1-023]
gi|313622709|gb|EFR93062.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL J1-023]
Length = 288
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP G++ ++ T +Q+ K + Q +
Sbjct: 69 KIPVYEYDLEIIYEDDFLLVVNKPVGMKTHANDSYETDTCANAVQYYLEK-----TGQEA 123
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 124 NALAVHRLDQTTSGLVLFAKNKLA 147
>gi|182677345|ref|YP_001831491.1| RluA family pseudouridine synthase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182633228|gb|ACB94002.1| pseudouridine synthase, RluA family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 346
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED L+ L+KP+GL V P Q T++ L + S + P
Sbjct: 94 DLP--LNIVYEDAGLVVLDKPAGLVVHPAAGHAQGTLVNALMAHCGESLSGIGG-VKRPG 150
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + TSG+L+ AKT +A FAD
Sbjct: 151 IVHRLDKDTSGLLVAAKTDAVHQGLARLFAD 181
>gi|187923831|ref|YP_001895473.1| pseudouridine synthase [Burkholderia phytofirmans PsJN]
gi|187715025|gb|ACD16249.1| pseudouridine synthase, RluA family [Burkholderia phytofirmans
PsJN]
Length = 431
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLF 66
K + PL GA ELV LP + P+ P LE+ YEDD L+ +NKP+G+ V P
Sbjct: 112 KIRQPVPL-GATIELVPDLLPEQLAFTPE-PVPLEIVYEDDTLVVINKPAGMVVHPAAGN 169
Query: 67 QQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
TVL L +R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 170 WSGTVLNGLLYRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLEAQT 216
>gi|399043350|ref|ZP_10737704.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398058188|gb|EJL50096.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 341
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI ++KP+GL V P T++ L + S + P VHRL
Sbjct: 90 LDILYEDDDLIVISKPAGLVVHPAAGNWTGTLVNALIYHCGDSLSGIGG-VRRPGIVHRL 148
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK ++ ++ FAD
Sbjct: 149 DKDTTGVMVVAKNDISHRHLSLQFAD 174
>gi|419848689|ref|ZP_14371782.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 1-6B]
gi|419851197|ref|ZP_14374149.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 35B]
gi|419852870|ref|ZP_14375723.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 2-2B]
gi|419854417|ref|ZP_14377205.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 44B]
gi|386406892|gb|EIJ21885.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 35B]
gi|386407222|gb|EIJ22202.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 1-6B]
gi|386409565|gb|EIJ24407.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 2-2B]
gi|386417757|gb|EIJ32229.1| RNA pseudouridine synthase domain protein [Bifidobacterium longum
subsp. longum 44B]
Length = 254
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++V YED+ +I ++KP L +P G++ ++T L +L+ R + +
Sbjct: 4 EPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDIT------- 56
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P HRL R T+G+L+ + + F ++ +V
Sbjct: 57 --PAHRLDRMTAGVLVFVRDPACRGAYQMLFQNRQAV 91
>gi|325283365|ref|YP_004255906.1| pseudouridine synthase, RluA family [Deinococcus proteolyticus MRP]
gi|324315174|gb|ADY26289.1| pseudouridine synthase, RluA family [Deinococcus proteolyticus MRP]
Length = 319
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS--KQSSSLSSQASHPVPVH 97
L+V YEDD LIA+NKP G+ P T++ L R +QS S P VH
Sbjct: 80 LDVLYEDDALIAVNKPPGMVTHPAPGVVSGTLVNALLGRLELPQQSDHDSPAGYRPGIVH 139
Query: 98 RLGRGTSGILLCAKTKLAKTCIAAYF 123
RL + TSG+++ AKT A ++A F
Sbjct: 140 RLDKDTSGVIVVAKTVQAHAALSASF 165
>gi|251797854|ref|YP_003012585.1| pseudouridine synthase [Paenibacillus sp. JDR-2]
gi|247545480|gb|ACT02499.1| pseudouridine synthase, RluA family [Paenibacillus sp. JDR-2]
Length = 315
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED D+I +NKP G+ V P TV+ L + K S ++ P
Sbjct: 88 DIP--LDIVYEDADVIVINKPRGMVVHPAPGHSSGTVVNALMYHC-KDLSGING-VLRPG 143
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + TSG+L+ AK LA +A D +
Sbjct: 144 IVHRIDKDTSGLLMAAKNDLAHVSLAEQLKDHS 176
>gi|406878758|gb|EKD27579.1| hypothetical protein ACD_79C00669G0005 [uncultured bacterium]
Length = 317
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 17 LQGAGSELVYHRLP---WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
G E +Y + P K ++P LE+ +EDDDLI +NK GL V GG ++ T++
Sbjct: 61 FSGDVIEFIYCKPPALEIKPQNIP--LEILHEDDDLIIINKQPGLVVHAGGGTRENTLVN 118
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + S S P VHRL + TSG+++ AK I F +
Sbjct: 119 AIAYHFSDMDDFTDS--IRPGIVHRLDKDTSGVMIIAKKNSTMEIIQNQFKQR 169
>gi|340777822|ref|ZP_08697765.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter aceti NBRC 14818]
Length = 325
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 21 GSELVYHRLPWKEPDVPY----LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76
G EL+ +P P +P + YEDDDLI L+KP+GL V P + T++ L
Sbjct: 64 GVELILD-IPAPAPAIPVGEAISFPILYEDDDLIVLDKPAGLVVHPAPGNETGTLVNALV 122
Query: 77 WRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ + + P VHRL + TSG+++ AKT+ A ++ FA +
Sbjct: 123 AHCGESLVGIGGE-RRPGIVHRLDKDTSGLMVAAKTERAHRALSEDFAAR 171
>gi|118588308|ref|ZP_01545717.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
[Stappia aggregata IAM 12614]
gi|118439014|gb|EAV45646.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
[Stappia aggregata IAM 12614]
Length = 341
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K D+P + V +ED+ LI ++KP+GL V PG T++ L S +
Sbjct: 87 KGEDIP--VTVVFEDEHLIVVDKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGG-VK 143
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
P VHR+ + TSG+L+ AKT A +AA FAD
Sbjct: 144 RPGIVHRIDKDTSGLLVVAKTDQAHKGLAAQFAD 177
>gi|116330669|ref|YP_800387.1| pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116124358|gb|ABJ75629.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 377
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 69
K S L G +VY + KEP V ++ YED+ +A++KP L V P G +++
Sbjct: 55 KKVKSGILLREGDTVVYQPIERKEPPVRKDYKILYEDEFFVAVDKPGDLPVHPAGKYRKG 114
Query: 70 TVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L L+ S + + VHRL R TSG++L AK A + ++ F+ +
Sbjct: 115 NLLTLLKE---------SGKFENLFTVHRLDRETSGVVLFAKDSKAASLLSGLFSSR 162
>gi|227540505|ref|ZP_03970554.1| pseudouridylate synthase [Sphingobacterium spiritivorum ATCC 33300]
gi|227239587|gb|EEI89602.1| pseudouridylate synthase [Sphingobacterium spiritivorum ATCC 33300]
Length = 348
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ +EDD+++ +NK +G+ V PG T++ L + Q ++ A P
Sbjct: 94 DIP--LDIMFEDDEVMVVNKVAGMVVHPGFNNYTGTLVNALTHHFN-QLPTMPGNAGRPG 150
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VHR+ + TSG+L+ AK++ A T +A F D + V
Sbjct: 151 LVHRIDKDTSGLLVIAKSEWAMTYLAKQFFDHSIV 185
>gi|407718127|ref|YP_006795532.1| 23S RNA-specific pseudouridylate synthase [Leuconostoc carnosum
JB16]
gi|407241883|gb|AFT81533.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc carnosum
JB16]
Length = 304
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + YED+DLI +NKP G+ V P T++ L + A S+++ + P
Sbjct: 76 DIP--LSIVYEDNDLIVVNKPQGMVVHPAAGHTSGTLVNALLYHAP--LSTINGEFR-PG 130
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHR+ R TSG+L+ AK A ++A D
Sbjct: 131 IVHRIDRDTSGLLMVAKNDEAHQALSAQLKD 161
>gi|306833765|ref|ZP_07466891.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
bovis ATCC 700338]
gi|304424102|gb|EFM27242.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
bovis ATCC 700338]
Length = 298
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + ++P L++ YED D+ +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYTAENIP--LDIIYEDADVAVVNKPQGMVVHPSVGHTSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VIRPGIVHRIDKDTSGLLMIAKNDTAHNALAAELKDKKSL 161
>gi|300726252|ref|ZP_07059705.1| ribosomal large subunit pseudouridine synthase D [Prevotella
bryantii B14]
gi|299776449|gb|EFI73006.1| ribosomal large subunit pseudouridine synthase D [Prevotella
bryantii B14]
Length = 352
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
++V YEDDDL+ +NK +G+ V PG T++ + + + S + VHR+
Sbjct: 97 IDVVYEDDDLMVINKAAGMVVHPGAGNFTGTLINAIAYYL-RDLESFDANNPEVGLVHRI 155
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT AK+ + F +KT+
Sbjct: 156 DKDTSGLLVVAKTPEAKSALGKQFFNKTT 184
>gi|289662056|ref|ZP_06483637.1| pseudouridylate synthase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 349
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
SAP + G+E+ Y R EP +PY+ V + D DL+ KP L V P G + + T+L
Sbjct: 115 SAPYR-VGAEIRYFREVADEPVIPYVETVVHADADLVVACKPHFLPVAPAGAYVRETLLT 173
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+L R + VP+HR+ R T+G++L + + A F ++
Sbjct: 174 RLVRRLDNPAL---------VPLHRIDRDTAGLVLFSANPATRGVYQALFRER 217
>gi|284036309|ref|YP_003386239.1| pseudouridine synthase [Spirosoma linguale DSM 74]
gi|283815602|gb|ADB37440.1| pseudouridine synthase, RluA family [Spirosoma linguale DSM 74]
Length = 348
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + +EDDDL+ +NKP+G+ V P T++ L + +S + P VHR+
Sbjct: 95 INIVFEDDDLLVINKPAGMVVHPAHGNWDGTLVNALVYHFQNLPTSRHGEVR-PGLVHRI 153
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+++ AKT+ A T +A F + T
Sbjct: 154 DKDTSGLMVIAKTEFAMTYLARQFFEHT 181
>gi|406040098|ref|ZP_11047453.1| ribosomal large subunit pseudouridine synthase D (pseudouridylate
synthase) (Uracil hydrolyase) [Acinetobacter ursingii
DSM 16037 = CIP 107286]
Length = 349
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD++ +NKP G+ V PG T++ L + K S++ + VHR+
Sbjct: 114 LDIVYEDDDILVINKPVGMVVHPGAGNSSGTLVNALLYHYPK-----SAELARAGLVHRI 168
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK A+ ++ ADK+
Sbjct: 169 DKDTSGLLVVAKNLEAQFSLSKQLADKS 196
>gi|365882308|ref|ZP_09421558.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
gi|365289393|emb|CCD94089.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
Length = 332
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 43 FYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRG 102
YEDDD++ LNKP+GL V GG R + + L+ S+ P VHR+ R
Sbjct: 96 LYEDDDVLVLNKPAGLAV-QGGSGMTRHIDQMLE-------VMRDSKGQKPRLVHRIDRE 147
Query: 103 TSGILLCAKTKLAKTCIAAYFADKTS 128
TSG LL AKT+ A T + F +++
Sbjct: 148 TSGCLLIAKTRFAATHLTGAFRSRSA 173
>gi|218675156|ref|ZP_03524825.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli GR56]
Length = 199
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDDLI ++KP+GL V P T++ L S + P
Sbjct: 79 DIP--LDILYEDDDLIVISKPAGLVVHPASGNWTGTLVNALIHHCGATLSGIGG-VRRPG 135
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
VHRL + T+G+++ AK +A ++ FAD
Sbjct: 136 IVHRLDKDTTGVMVVAKNDIAHRHLSLQFAD 166
>gi|346225493|ref|ZP_08846635.1| ribosomal large subunit pseudouridine synthase D [Anaerophaga
thermohalophila DSM 12881]
Length = 359
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
+ YED+ LI +NK G+ V PG T++ L W K P VHR+ +
Sbjct: 113 IVYEDEQLIVVNKAPGMVVHPGFGNYTGTLVNALAWHL-KDHPWFQGNDPRPGLVHRIDK 171
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKTS 128
TSG+L+ AKT+ AKT + F +KT+
Sbjct: 172 DTSGLLVIAKTENAKTNLGRQFFNKTT 198
>gi|424824052|ref|ZP_18249065.1| Ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes str. Scott A]
gi|332312732|gb|EGJ25827.1| Ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes str. Scott A]
Length = 291
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 72 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDA 126
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 127 NALAVHRLDQTTSGLVLFAKNKLA 150
>gi|172060753|ref|YP_001808405.1| RluA family pseudouridine synthase [Burkholderia ambifaria MC40-6]
gi|171993270|gb|ACB64189.1| pseudouridine synthase, RluA family [Burkholderia ambifaria MC40-6]
Length = 407
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 2 TLIEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGL 58
LI+ K + PL GA ELV LP + P+ P L+V YEDD L+ +NKP+G+
Sbjct: 96 VLIDGAPAKIRQPVPL-GARIELVPDLLPEQLAFTPE-PVPLDVIYEDDALLVINKPAGV 153
Query: 59 QVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118
V P T+L L R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 154 VVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQTD 209
Query: 119 IAAYFADKT 127
+ +T
Sbjct: 210 LVRQLQART 218
>gi|416162556|ref|ZP_11606785.1| RNA pseudouridine synthase [Neisseria meningitidis N1568]
gi|421537935|ref|ZP_15984116.1| pseudouridine synthase [Neisseria meningitidis 93003]
gi|433473266|ref|ZP_20430630.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
97021]
gi|433481816|ref|ZP_20439081.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2006087]
gi|433483800|ref|ZP_20441028.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2002038]
gi|433486001|ref|ZP_20443202.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
97014]
gi|325127991|gb|EGC50890.1| RNA pseudouridine synthase [Neisseria meningitidis N1568]
gi|402317777|gb|EJU53307.1| pseudouridine synthase [Neisseria meningitidis 93003]
gi|432210867|gb|ELK66823.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
97021]
gi|432217647|gb|ELK73515.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2006087]
gi|432221503|gb|ELK77313.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
2002038]
gi|432223047|gb|ELK78829.1| RNA pseudouridylate synthase family protein [Neisseria meningitidis
97014]
Length = 307
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLKETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPDTRGAYQTMFQNKT 178
>gi|47096862|ref|ZP_00234442.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 1/2a F6854]
gi|254912805|ref|ZP_05262817.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J2818]
gi|254937132|ref|ZP_05268829.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes F6900]
gi|386047900|ref|YP_005966232.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J0161]
gi|47014781|gb|EAL05734.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 1/2a F6854]
gi|258609734|gb|EEW22342.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes F6900]
gi|293590800|gb|EFF99134.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J2818]
gi|345534891|gb|AEO04332.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J0161]
Length = 289
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 70 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDT 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|423302159|ref|ZP_17280182.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
gi|408471250|gb|EKJ89782.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
Length = 561
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LE+ YED+ L+ +NKP+G+ +PG + +V +L+ + A+ P+ VHRL
Sbjct: 348 LEIVYEDEWLVVVNKPAGILSVPGKEEDRDSVYHRLKKK--------YPDATGPMIVHRL 399
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK + A FA ++
Sbjct: 400 DMATSGLLLVAKTKEVHQHLQAQFASRS 427
>gi|289547904|ref|YP_003472892.1| pseudouridine synthase [Thermocrinis albus DSM 14484]
gi|289181521|gb|ADC88765.1| pseudouridine synthase, RluA family [Thermocrinis albus DSM 14484]
Length = 324
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 21 GSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
G E+V +P EP D+P LE+ YEDDDL + KP GL V P + T++
Sbjct: 64 GGEVVVLCVPKVEPLSLPAEDIP--LEILYEDDDLAVVVKPCGLVVHPSPGYTSGTLVNA 121
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L +R + + P VHRL R T G+++ AK +LA +A F +
Sbjct: 122 LLFRWRDLPT--VGEWYRPGIVHRLDRNTMGVMVVAKRELAHRRLAEQFEKR 171
>gi|115351782|ref|YP_773621.1| RluA family pseudouridine synthase [Burkholderia ambifaria AMMD]
gi|115281770|gb|ABI87287.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
ambifaria AMMD]
Length = 405
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 2 TLIEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGL 58
LI+ K + PL GA ELV LP + P+ P L+V YEDD L+ +NKP+G+
Sbjct: 96 VLIDGAPAKIRQPVPL-GARIELVPDLLPEQLAFTPE-PVPLDVIYEDDALLVINKPAGV 153
Query: 59 QVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118
V P T+L L R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 154 VVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQTD 209
Query: 119 IAAYFADKT 127
+ +T
Sbjct: 210 LVRQLQART 218
>gi|350273980|ref|YP_004885293.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Rickettsia japonica YH]
gi|348593193|dbj|BAK97154.1| ribosomal large subunit pseudouridine synthases rluD subfamily
protein [Rickettsia japonica YH]
Length = 313
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDDLI +NK +G+ V PG T++ L +K S + S + P VHRL
Sbjct: 79 LDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNAL-LHYTKNLSDIGS-SERPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|452752001|ref|ZP_21951745.1| Ribosomal large subunit pseudouridine synthase D [alpha
proteobacterium JLT2015]
gi|451960521|gb|EMD82933.1| Ribosomal large subunit pseudouridine synthase D [alpha
proteobacterium JLT2015]
Length = 319
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L++ YED LI ++KP+GL V P + T++ L + S + +
Sbjct: 79 EPQDIP--LDIVYEDAGLIVVDKPAGLVVHPAAGNRDGTLVNALLHHCGGELSGIGG-VT 135
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
P VHR+ + TSG+L+ AKT A +AA FA
Sbjct: 136 RPGIVHRIDKDTSGLLVAAKTAHAHMALAAQFA 168
>gi|421540040|ref|ZP_15986193.1| pseudouridine synthase [Neisseria meningitidis 93004]
gi|402320324|gb|EJU55815.1| pseudouridine synthase [Neisseria meningitidis 93004]
Length = 307
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D+ LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPDTRGAYQTMFQNKT 178
>gi|338707486|ref|YP_004661687.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294290|gb|AEI37397.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 314
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L + +EDD L+ +NKP+G+ V P T++ L + + S + A P
Sbjct: 79 DIP--LNIVFEDDHLLIVNKPAGMVVHPAAGNFDNTLVNALLHHCAGKLSGIGGVAR-PG 135
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
VHR+ + TSG+L+ AKT A +AA FA
Sbjct: 136 IVHRIDKDTSGLLVVAKTDPAHAGLAAQFA 165
>gi|78066563|ref|YP_369332.1| ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
383]
gi|77967308|gb|ABB08688.1| ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
383]
Length = 402
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 3 LIEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQ 59
L++ K + PL GA +LV LP + P+ P L+V YEDD L+ +NKP+GL
Sbjct: 97 LVDGAPAKIRQPVPL-GAKIQLVPDLLPEQLAFTPE-PVPLDVIYEDDALVVINKPAGLV 154
Query: 60 VLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119
V P T+L L R ++ L VHRL + TSG+++ A+T A+T +
Sbjct: 155 VHPAAGNWSGTILNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQTDL 210
Query: 120 AAYFADKT 127
+T
Sbjct: 211 VRQLQART 218
>gi|406969316|gb|EKD93992.1| Pseudouridine synthase [uncultured bacterium]
Length = 318
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V +ED + ++KP+GL V PG T+ + L+ Q S + + P VHRL
Sbjct: 87 LKVLFEDQNYAVIDKPAGLVVHPGAGVHSETLTEALKSHFKDQLSHMGG-VNRPGIVHRL 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+GTSGI++ AK +A F KT +
Sbjct: 146 DKGTSGIMVIAKNDETHRNLAKQFESKTII 175
>gi|379705487|ref|YP_005203946.1| ribosomal large subunit pseudouridine synthase [Streptococcus
infantarius subsp. infantarius CJ18]
gi|374682186|gb|AEZ62475.1| ribosomal large subunit pseudouridine synthase [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 298
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L +K ++P L++ YED+D+ + KP G+ V P T++ L + K SS++
Sbjct: 65 LEYKAENIP--LDIVYEDEDVAVVYKPQGMVVHPSVGHTSGTLVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AK A +AA DK S+
Sbjct: 122 -VIRPGIVHRIDKDTSGLLMIAKNDTAHNALAAELKDKKSL 161
>gi|257087008|ref|ZP_05581369.1| pseudouridylate synthase [Enterococcus faecalis D6]
gi|256995038|gb|EEU82340.1| pseudouridylate synthase [Enterococcus faecalis D6]
Length = 301
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P T++
Sbjct: 55 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSVGHPNGTLVN 111
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 112 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 165
>gi|229918562|ref|YP_002887208.1| RluA family pseudouridine synthase [Exiguobacterium sp. AT1b]
gi|229469991|gb|ACQ71763.1| pseudouridine synthase, RluA family [Exiguobacterium sp. AT1b]
Length = 303
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P LE+ +ED+D+I +NK G+ V P T++ L + S + P
Sbjct: 73 DIP--LEIVFEDEDVIVVNKARGMVVHPAAGHTSGTLVNALLYHCDDLSGI--NGVKRPG 128
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHR+ + T+G+L+ AK LA +A+ DKT
Sbjct: 129 IVHRIDKDTTGLLMVAKNDLAHESLASQLKDKT 161
>gi|285017490|ref|YP_003375201.1| pseudouridine synthase [Xanthomonas albilineans GPE PC73]
gi|283472708|emb|CBA15213.1| probable pseudouridine synthase protein [Xanthomonas albilineans
GPE PC73]
Length = 335
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV YEDD +I LNKP+GL V PG T++ L +R LS+ + VHRL
Sbjct: 94 LEVLYEDDQVIVLNKPAGLVVHPGAGNPGGTLVNALLYR----DPGLSALPRAGI-VHRL 148
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADK 126
+ TSG ++ A+T A T + A A +
Sbjct: 149 DKDTSGAMVVARTLQAHTALVAQLAAR 175
>gi|406039399|ref|ZP_11046754.1| pseudouridylate synthase [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 301
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 15 APLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
+P Q A + + Y+R E VP+ ++ +E++ L+ ++KP L + P G + Q T+L +
Sbjct: 60 SPYQ-ASTHIFYYRFLAHEIHVPFEHQILFENEHLLIVDKPHFLTISPTGQYVQETLLVR 118
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
L+ + + S P+HRL R T+GI+L +K + FA +
Sbjct: 119 LKNQTGIEELS---------PIHRLDRETAGIVLFSKKAEVRHAYQELFAKR 161
>gi|46908477|ref|YP_014866.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes serotype 4b str. F2365]
gi|47093359|ref|ZP_00231127.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 4b H7858]
gi|226224852|ref|YP_002758959.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|254825192|ref|ZP_05230193.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-194]
gi|254931643|ref|ZP_05265002.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HPB2262]
gi|254992053|ref|ZP_05274243.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL J2-064]
gi|386732992|ref|YP_006206488.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 07PF0776]
gi|405750642|ref|YP_006674108.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes ATCC 19117]
gi|405753516|ref|YP_006676981.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2378]
gi|405756422|ref|YP_006679886.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2540]
gi|406705038|ref|YP_006755392.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L312]
gi|417315884|ref|ZP_12102554.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes J1816]
gi|417318302|ref|ZP_12104891.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes J1-220]
gi|424715125|ref|YP_007015840.1| Uncharacterized RNA pseudouridine synthase YhcT [Listeria
monocytogenes serotype 4b str. LL195]
gi|46881748|gb|AAT05043.1| ribosomal large subunit pseudouridine synthase, RluA family
[Listeria monocytogenes serotype 4b str. F2365]
gi|47018278|gb|EAL09043.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 4b H7858]
gi|225877314|emb|CAS06028.1| Putative ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|293583198|gb|EFF95230.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HPB2262]
gi|293594437|gb|EFG02198.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-194]
gi|328465825|gb|EGF37013.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes J1816]
gi|328472136|gb|EGF43011.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes J1-220]
gi|384391750|gb|AFH80820.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 07PF0776]
gi|404219842|emb|CBY71206.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes ATCC 19117]
gi|404222716|emb|CBY74079.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2378]
gi|404225622|emb|CBY76984.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2540]
gi|406362068|emb|CBY68341.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L312]
gi|424014309|emb|CCO64849.1| Uncharacterized RNA pseudouridine synthase YhcT [Listeria
monocytogenes serotype 4b str. LL195]
Length = 289
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 70 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|284802691|ref|YP_003414556.1| hypothetical protein LM5578_2447 [Listeria monocytogenes 08-5578]
gi|284995833|ref|YP_003417601.1| hypothetical protein LM5923_2398 [Listeria monocytogenes 08-5923]
gi|404284742|ref|YP_006685639.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2372]
gi|404411551|ref|YP_006697139.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC5850]
gi|404414328|ref|YP_006699915.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC7179]
gi|405759296|ref|YP_006688572.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2479]
gi|284058253|gb|ADB69194.1| hypothetical protein LM5578_2447 [Listeria monocytogenes 08-5578]
gi|284061300|gb|ADB72239.1| hypothetical protein LM5923_2398 [Listeria monocytogenes 08-5923]
gi|404231377|emb|CBY52781.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC5850]
gi|404234244|emb|CBY55647.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2372]
gi|404237178|emb|CBY58580.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2479]
gi|404240027|emb|CBY61428.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC7179]
Length = 291
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 72 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDA 126
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 127 NALAVHRLDQTTSGLVLFAKNKLA 150
>gi|227551404|ref|ZP_03981453.1| pseudouridylate synthase [Enterococcus faecium TX1330]
gi|257887487|ref|ZP_05667140.1| pseudouridylate synthase [Enterococcus faecium 1,141,733]
gi|257895982|ref|ZP_05675635.1| pseudouridylate synthase [Enterococcus faecium Com12]
gi|293570492|ref|ZP_06681547.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E980]
gi|424763586|ref|ZP_18191056.1| pseudouridine synthase, RluA family [Enterococcus faecium TX1337RF]
gi|430841190|ref|ZP_19459109.1| RluA family pseudouridine synthase [Enterococcus faecium E1007]
gi|431034982|ref|ZP_19491859.1| RluA family pseudouridine synthase [Enterococcus faecium E1590]
gi|431737805|ref|ZP_19526757.1| RluA family pseudouridine synthase [Enterococcus faecium E1972]
gi|431751736|ref|ZP_19540423.1| RluA family pseudouridine synthase [Enterococcus faecium E2620]
gi|431756578|ref|ZP_19545210.1| RluA family pseudouridine synthase [Enterococcus faecium E3083]
gi|431761829|ref|ZP_19550391.1| RluA family pseudouridine synthase [Enterococcus faecium E3548]
gi|227179523|gb|EEI60495.1| pseudouridylate synthase [Enterococcus faecium TX1330]
gi|257823541|gb|EEV50473.1| pseudouridylate synthase [Enterococcus faecium 1,141,733]
gi|257832547|gb|EEV58968.1| pseudouridylate synthase [Enterococcus faecium Com12]
gi|291609438|gb|EFF38705.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecium E980]
gi|402422600|gb|EJV54833.1| pseudouridine synthase, RluA family [Enterococcus faecium TX1337RF]
gi|430493966|gb|ELA70216.1| RluA family pseudouridine synthase [Enterococcus faecium E1007]
gi|430563697|gb|ELB02906.1| RluA family pseudouridine synthase [Enterococcus faecium E1590]
gi|430598411|gb|ELB36152.1| RluA family pseudouridine synthase [Enterococcus faecium E1972]
gi|430615030|gb|ELB52000.1| RluA family pseudouridine synthase [Enterococcus faecium E2620]
gi|430620432|gb|ELB57234.1| RluA family pseudouridine synthase [Enterococcus faecium E3083]
gi|430624521|gb|ELB61171.1| RluA family pseudouridine synthase [Enterococcus faecium E3548]
Length = 303
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED+D+ +NKP G+ V P T++ L + K S+++ P VHR+
Sbjct: 78 LTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHV-KDLSTING-VIRPGIVHRI 135
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AK A +A DKTS+
Sbjct: 136 DKDTSGLLMVAKNDQAHESLAKQLKDKTSL 165
>gi|156055472|ref|XP_001593660.1| pseudouridine synthase [Sclerotinia sclerotiorum 1980 UF-70]
gi|154702872|gb|EDO02611.1| hypothetical protein SS1G_05088 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 399
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+++ H L EP V L + + +ED+D+I +NKPSG+ V P G + +V++ + RA +
Sbjct: 52 DVISHTLHRHEPPVTALPISIVHEDEDIIVINKPSGVPVHPAGRYNYNSVVEIM--RAER 109
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+P+P +RL R TSGI+ K A ++ + +T
Sbjct: 110 ------GHGWNPLPCNRLDRLTSGIMFIGKHAKAAEALSLQISGRT 149
>gi|85704967|ref|ZP_01036067.1| ribosomal large subunit pseudouridine synthase D [Roseovarius sp.
217]
gi|85670289|gb|EAQ25150.1| ribosomal large subunit pseudouridine synthase D [Roseovarius sp.
217]
Length = 342
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L V YEDDDLI +NKP+G+ V P + T++ L S + + P VHR+
Sbjct: 85 LTVVYEDDDLIVINKPAGMVVHPAPGSPEGTLVNALLHHCGDSLSGVGG-SKRPGIVHRI 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYF 123
+ TSG+L+ AK+ A +AA F
Sbjct: 144 DKDTSGLLVVAKSDAAHQGLAAQF 167
>gi|406860606|gb|EKD13663.1| DRAP deaminase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 455
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+++ H L EP V L + V +ED+D+I +NKPSG+ V P G + +V++ + RA +
Sbjct: 112 DVISHTLHRHEPPVTALPISVLHEDEDMIVINKPSGVPVHPAGRYNYNSVVEIM--RAER 169
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAK 111
A +P+P +RL R TSG++ AK
Sbjct: 170 ------GHAWNPLPCNRLDRLTSGVMFIAK 193
>gi|402702942|ref|ZP_10850921.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Rickettsia helvetica C9P9]
Length = 313
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+DLI +NK +G+ V PG T++ L + S SS+ P VHRL
Sbjct: 79 LDIIYEDEDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSDIGSSE--RPGIVHRL 136
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AK A +A
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLA 157
>gi|319650250|ref|ZP_08004396.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
gi|317398081|gb|EFV78773.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
Length = 265
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 14 SAPLQGAGSELVYHRLPWKEPD---VP--YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQ 68
+ PLQ AG +L +H ++E D +P Y +EV +EDD L+ LNKP+G+ P Q
Sbjct: 17 TNPLQ-AGDKLKFHF--FREEDLGLIPSYYDIEVLFEDDHLLVLNKPAGMDTHPNSPEQN 73
Query: 69 RTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
T+ + Q S + +HRL R T+G +L AK LA + ++T
Sbjct: 74 NTLANAAAFHMQMQGEYRSIKH-----IHRLDRDTTGAILFAKHALAGAILDKKLEERT 127
>gi|443674407|ref|ZP_21139439.1| RNA pseudouridine synthase [Rhodococcus sp. AW25M09]
gi|443413034|emb|CCQ17778.1| RNA pseudouridine synthase [Rhodococcus sp. AW25M09]
Length = 309
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 13 NSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVL 72
+SA + +++ +R P EP VP+ L+V + D+DL+ ++KP L P G + R+ L
Sbjct: 61 DSATIARPRADIYLYRDPPVEPTVPFSLDVLHRDEDLLVVDKPHFLATTPRGAYVARSAL 120
Query: 73 KQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L+ R S P HRL R T+G+L+ + A+ FA + V
Sbjct: 121 VLLRRRFDLPELS---------PAHRLDRLTAGVLVFTVRRQARRPYQELFAQRAIV 168
>gi|254853367|ref|ZP_05242715.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-503]
gi|300763946|ref|ZP_07073942.1| RluA family ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes FSL N1-017]
gi|404281864|ref|YP_006682762.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2755]
gi|404287677|ref|YP_006694263.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|258606732|gb|EEW19340.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-503]
gi|300515287|gb|EFK42338.1| RluA family ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes FSL N1-017]
gi|404228499|emb|CBY49904.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2755]
gi|404246606|emb|CBY04831.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes serotype 7 str. SLCC2482]
Length = 289
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 70 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|25029349|ref|NP_739403.1| hypothetical protein CE2793 [Corynebacterium efficiens YS-314]
gi|23494637|dbj|BAC19603.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 340
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G ++ ++R+P E +PY + + +ED+DL+ ++KP L +P G T L +++
Sbjct: 93 GEDIWFYRMPAAERPIPYEILIIHEDEDLLVVDKPPYLATMPRGRHITETALVKMRVLTG 152
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
Q + P HRL R TSG+L+ K + FA + +
Sbjct: 153 HQELT---------PAHRLDRLTSGVLVMVKRPELRGMYQTLFARREA 191
>gi|395244673|ref|ZP_10421628.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
gi|394483026|emb|CCI82636.1| Pseudouridine synthase [Lactobacillus hominis CRBIP 24.179]
Length = 305
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L+V YED D+I +NKP G+ V P T++ L + Q + S + P VHR+
Sbjct: 79 LDVVYEDQDVIVVNKPQGVVVHPSAGHPDHTLVNGLLYHT--QDLAKSPEGFRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A KT+
Sbjct: 137 DKDTSGLLMIAKNDKARESLEDQLAHKTN 165
>gi|293377440|ref|ZP_06623642.1| pseudouridine synthase, RluA family [Enterococcus faecium PC4.1]
gi|292643958|gb|EFF62066.1| pseudouridine synthase, RluA family [Enterococcus faecium PC4.1]
Length = 305
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED+D+ +NKP G+ V P T++ L + K S+++ P VHR+
Sbjct: 78 LTIVYEDEDVAVINKPQGMVVHPSAGHTHGTMVNALMYHV-KDLSTING-VIRPGIVHRI 135
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AK A +A DKTS+
Sbjct: 136 DKDTSGLLMVAKNDQAHESLAKQLKDKTSL 165
>gi|241765468|ref|ZP_04763435.1| pseudouridine synthase [Acidovorax delafieldii 2AN]
gi|241364778|gb|EER59767.1| pseudouridine synthase [Acidovorax delafieldii 2AN]
Length = 303
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G L Y+R EP +P+ V Y+D+ L+ +KP + V P G + Q T+L +L+ R
Sbjct: 73 GIRLYYYRHLQAEPHIPFEETVLYQDEHLLVADKPHFMPVTPTGRYLQHTLLVRLKRRLG 132
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
S P+HR+ R T+G++L + + + A F D+
Sbjct: 133 LPELS---------PLHRIDRDTAGLVLFSVQRRTRGTYQALFRDR 169
>gi|91783470|ref|YP_558676.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
xenovorans LB400]
gi|91687424|gb|ABE30624.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
xenovorans LB400]
Length = 438
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLF 66
K + PL GA ELV LP + P+ P LE+ YEDD L+ +NKP+G+ V P
Sbjct: 112 KIRQPVPL-GATIELVPDLLPEQLAFTPE-PVPLEIIYEDDTLVVINKPAGMVVHPAAGN 169
Query: 67 QQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
T+L L +R ++ L VHRL + TSG+++ A+T A+T
Sbjct: 170 WSGTLLNGLLYRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLEAQT 216
>gi|387902335|ref|YP_006332674.1| ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
KJ006]
gi|387577227|gb|AFJ85943.1| Ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
KJ006]
Length = 359
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 2 TLIEFYSTKHKNSAPLQGAGSELVYHRLPWK-----EPDVPYLLEVFYEDDDLIALNKPS 56
LI+ K + PL GA ELV LP + EP VP L+V YEDD L+ +NKP+
Sbjct: 54 VLIDGAPAKIRQPVPL-GAKIELVPDLLPEQLAFAAEP-VP--LDVIYEDDALVVINKPA 109
Query: 57 GLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
GL V P T+L L R ++ L VHRL + TSG+++ A+T A+
Sbjct: 110 GLVVHPAAGNWSGTLLNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQ 165
Query: 117 TCIAAYFADKT 127
T + +T
Sbjct: 166 TDLVRQLQART 176
>gi|16804283|ref|NP_465768.1| hypothetical protein lmo2244 [Listeria monocytogenes EGD-e]
gi|254826867|ref|ZP_05231554.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL N3-165]
gi|386044557|ref|YP_005963362.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 10403S]
gi|386051220|ref|YP_005969211.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-561]
gi|386054499|ref|YP_005972057.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes Finland 1998]
gi|16411714|emb|CAD00322.1| lmo2244 [Listeria monocytogenes EGD-e]
gi|258599247|gb|EEW12572.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL N3-165]
gi|345537791|gb|AEO07231.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 10403S]
gi|346425066|gb|AEO26591.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-561]
gi|346647150|gb|AEO39775.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes Finland 1998]
gi|441472059|emb|CCQ21814.1| Uncharacterized RNA pseudouridine synthase YhcT [Listeria
monocytogenes]
gi|441475195|emb|CCQ24949.1| Uncharacterized RNA pseudouridine synthase YhcT [Listeria
monocytogenes N53-1]
Length = 289
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K P Y LE+ YEDD L+ +NKP ++ P ++ T +Q+ K + Q +
Sbjct: 70 KIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPNDSYETDTCANAVQYYLEK-----TGQDA 124
Query: 92 HPVPVHRLGRGTSGILLCAKTKLA 115
+ + VHRL + TSG++L AK KLA
Sbjct: 125 NALAVHRLDQTTSGLVLFAKNKLA 148
>gi|296284607|ref|ZP_06862605.1| pseudouridine synthase D large subunit [Citromicrobium
bathyomarinum JL354]
Length = 314
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 33 EP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
EP D+P L V YED LI ++KP+G+ V P + T++ L + Q S ++
Sbjct: 74 EPQDIP--LVVAYEDAHLIVVDKPAGMVVHPAAGNRDGTLVNALLYHCRGQLSGING-VE 130
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P VHR+ + TSG+L+ AKT A +A FAD +
Sbjct: 131 RPGIVHRIDKDTSGLLVVAKTDAAHEGLARQFADHS 166
>gi|405355081|ref|ZP_11024307.1| Ribosomal large subunit pseudouridine synthase D [Chondromyces
apiculatus DSM 436]
gi|397091423|gb|EJJ22225.1| Ribosomal large subunit pseudouridine synthase D [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 322
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
+EP P L V ++DD L+ L+KP+GL + P +Q+ T++ L+ R ++ +
Sbjct: 80 EEPPTPTELPVVFQDDWLLVLDKPAGLPIHPSARYQKGTLVTLLRERFGERFAE------ 133
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P HRL R TSG+++C +T + + F +
Sbjct: 134 ---PAHRLDRETSGLVVCGRTTESCRVLGRLFVSR 165
>gi|386362494|ref|YP_006071825.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
gi|350276903|gb|AEQ24271.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
Length = 296
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L ++ D+P L++ YEDD L +NKP G+ V P T++ L + K SS++
Sbjct: 65 LEYQAQDIP--LDIIYEDDALAIINKPQGMVVHPSAGHPSGTMVNALMYHI-KDLSSING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ + TSG+L+ AKT A +A K S+
Sbjct: 122 -VVRPGIVHRIDKDTSGLLMVAKTDAAHQALAEELKAKKSL 161
>gi|414155728|ref|ZP_11412038.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
gi|410872663|gb|EKS20604.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
Length = 296
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
+ ++ D+P L++ YED D++ +NKP G+ V P T++ L + K S ++
Sbjct: 65 ISYEAEDLP--LDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHV-KDLSGING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 122 ELR-PGIVHRIDKDTSGLLMVAKNDQAHVALAEELKDKKSL 161
>gi|419442415|ref|ZP_13982446.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13224]
gi|379554382|gb|EHZ19462.1| pseudouridine synthase, RluA family protein [Streptococcus
pneumoniae GA13224]
Length = 295
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + D+P LE+ Y+D+D+ +NKP G+ V P T++ L + K S ++
Sbjct: 65 LEYVAEDLP--LEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHI-KDLSGING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P VHR+ +GTSG+L+ AK A +A DK S+
Sbjct: 122 -VLRPGIVHRIDKGTSGLLMIAKNDDAHLVLAQELKDKKSL 161
>gi|291087665|ref|ZP_06572048.1| ribosomal large subunit pseudouridine synthase D [Clostridium sp.
M62/1]
gi|291074400|gb|EFE11764.1| pseudouridine synthase, RluA family [Clostridium sp. M62/1]
Length = 300
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 3 LIEFYSTKHKNSAPLQGAGSELVYHRLPWKEP-----DVPYLLEVFYEDDDLIALNKPSG 57
L+E KNS L AG ++ + EP D+P L++ YED D+I +NKP G
Sbjct: 35 LVEVDKRTVKNSYKLS-AGEKIEFEVPEAAEPEIKAEDIP--LDIIYEDSDIILVNKPKG 91
Query: 58 LQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117
+ V P +T++ L + S ++ P VHR+ T+G+L+ K A
Sbjct: 92 MVVHPAAGHYSQTLVNGLMYHCRDGLSGING-VLRPGIVHRIDMDTTGVLIVCKNDFAHN 150
Query: 118 CIAA----------YFADKTSVVDAD 133
IA YFA V+ D
Sbjct: 151 AIAEQLKVHSITRKYFAIVHGVIQED 176
>gi|218132473|ref|ZP_03461277.1| hypothetical protein BACPEC_00332 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992583|gb|EEC58585.1| pseudouridine synthase, RluA family [[Bacteroides] pectinophilus
ATCC 43243]
Length = 229
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 32 KEP-----DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
KEP ++P L++ YED+D+I +NKP G+ V P T++ L + S +
Sbjct: 72 KEPQIEAENIP--LDILYEDEDIIVINKPKGMVVHPAAGHYSGTLVNALMYHCRDNLSGI 129
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
+ P VHR+ T+G+L+ K A I+A
Sbjct: 130 NG-VMRPGIVHRIDMNTTGVLVACKNDFAHNAISA 163
>gi|403726781|ref|ZP_10947336.1| putative pseudouridine synthase [Gordonia rhizosphera NBRC 16068]
gi|403204245|dbj|GAB91667.1| putative pseudouridine synthase [Gordonia rhizosphera NBRC 16068]
Length = 320
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 26 YHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSS 85
Y LP +EP VP+ E+ + DDDL+ ++KP L PGG + + + L +L+ R +
Sbjct: 75 YRDLPVEEP-VPFHEEILHVDDDLVVIDKPHFLPTTPGGRYLRESALVRLRIRLDNPDLT 133
Query: 86 LSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P+HRL R T+G+++ A + + F +
Sbjct: 134 ---------PIHRLDRATAGLVMFAARPATRGAYQSLFEKR 165
>gi|384200098|ref|YP_005585841.1| putative ribosomal pseudouridine synthase [Bifidobacterium longum
subsp. infantis ATCC 15697 = JCM 1222]
gi|320459050|dbj|BAJ69671.1| putative ribosomal pseudouridine synthase [Bifidobacterium longum
subsp. infantis ATCC 15697 = JCM 1222]
Length = 254
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++V YED+ +I ++KP L +P G++ ++T L +L+ R + +
Sbjct: 4 EPHIPFEMDVLYEDERIIVVDKPHFLATMPRGMWYRQTALIRLRERLGEPDIT------- 56
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
P HRL R T+G+L+ + + F ++ +V
Sbjct: 57 --PAHRLDRMTAGVLVFVRDPACRGAYQMLFQNRQAV 91
>gi|260222881|emb|CBA32891.1| hypothetical protein Csp_B16300 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 308
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 20 AGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRA 79
AG L Y R EP +P+ EV ++D+ L+ ++KP L V+P G + T+L +LQ R
Sbjct: 71 AGRRLYYFRDVPDEPIIPFQEEVIWQDEHLLVVDKPHFLPVVPSGKHVRETLLARLQLRL 130
Query: 80 SKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
+ S PVHR+ + T+G+++ + A F ++
Sbjct: 131 NLPDLS---------PVHRIDKDTAGLVMFTTQPAGRNAYQALFRER 168
>gi|222110970|ref|YP_002553234.1| pseudouridine synthase [Acidovorax ebreus TPSY]
gi|221730414|gb|ACM33234.1| pseudouridine synthase [Acidovorax ebreus TPSY]
Length = 304
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G Y+R EP++P+ V Y+D ++ +KP L V+P G + Q+T+L +L+ R
Sbjct: 73 GVRYYYYRELPPEPELPFHETVLYQDAHILVADKPHFLPVVPAGRYLQQTLLVRLKRRLG 132
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
S PVHR+ R T+G++L + + + A F D+
Sbjct: 133 LSELS---------PVHRIDRDTAGLVLFSVQRATRGTYQALFRDR 169
>gi|426401494|ref|YP_007020466.1| RluA family pseudouridine synthase [Candidatus Endolissoclinum
patella L2]
gi|425858162|gb|AFX99198.1| pseudouridine synthase, RluA family protein [Candidatus
Endolissoclinum patella L2]
Length = 334
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
K ++P L + +ED +LI ++KP+G+ + P +T++ L + + SS++
Sbjct: 89 KAQNIP--LNILFEDSELIIIDKPAGMPMHPAPGALDKTLVNSLLYHYGENLSSING-VQ 145
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
P VHR+ +GTSG+++ AKT A +A FA
Sbjct: 146 RPGIVHRIDKGTSGLVVIAKTNRAHAALATCFA 178
>gi|28211276|ref|NP_782220.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
gi|28203716|gb|AAO36157.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
Length = 307
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED+D+I +NKP G+ V PG + T++ L A +S S + P VHR+
Sbjct: 82 LNILYEDEDIIVINKPQGMVVHPGVGNTKGTLVNGLL--AHCKSLSNINGEERPGIVHRI 139
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSGIL+ AKT A +A D
Sbjct: 140 DKDTSGILVIAKTNRAHEHLANQLKD 165
>gi|332879773|ref|ZP_08447463.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332682292|gb|EGJ55199.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 353
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+G+ V PG T++ L + ++ S++ P VHR+
Sbjct: 108 LQIVYEDDSLLVVNKPAGMVVHPGHGNYSGTLINALVYHFENLPNNSSNR---PGLVHRI 164
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AKT+ A + F KT+
Sbjct: 165 DKDTSGLLVIAKTEEAMLHLTQQFFHKTT 193
>gi|259505649|ref|ZP_05748551.1| ribosomal pseudouridine synthase [Corynebacterium efficiens YS-314]
gi|259166731|gb|EEW51285.1| ribosomal pseudouridine synthase [Corynebacterium efficiens YS-314]
Length = 308
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
G ++ ++R+P E +PY + + +ED+DL+ ++KP L +P G T L +++
Sbjct: 61 GEDIWFYRMPAAERPIPYEILIIHEDEDLLVVDKPPYLATMPRGRHITETALVKMRVLTG 120
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
Q + P HRL R TSG+L+ K + FA + +
Sbjct: 121 HQELT---------PAHRLDRLTSGVLVMVKRPELRGMYQTLFARREA 159
>gi|114771661|ref|ZP_01449065.1| putative Pseudouridine synthase, Rlu [Rhodobacterales bacterium
HTCC2255]
gi|114547733|gb|EAU50623.1| putative Pseudouridine synthase, Rlu [alpha proteobacterium
HTCC2255]
Length = 341
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD LI +NKP+G+ V P + T++ L + S + + P VHR+
Sbjct: 87 LDIVFEDDHLIIVNKPAGMVVHPAPGSENGTLVNALLYYFDGNLSGVGGE-KRPGIVHRI 145
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK+ A +A FAD +
Sbjct: 146 DKDTSGLLVVAKSDSAHAGLAKQFADHS 173
>gi|259500628|ref|ZP_05743530.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
gi|302191317|ref|ZP_07267571.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners AB-1]
gi|259168012|gb|EEW52507.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
Length = 311
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + + P VHR+
Sbjct: 83 LDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTKNLAE--CDEIFRPGIVHRI 140
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A+K +
Sbjct: 141 DKDTSGLLMIAKNATARISLEKQLANKIN 169
>gi|254500895|ref|ZP_05113046.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
gi|222436966|gb|EEE43645.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
Length = 341
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 21 GSELVYHRLPWKEPD-----VPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQL 75
G E+ H ++PD +P L V +ED +I ++KP+GL V PG T++ L
Sbjct: 71 GDEITLHLPEPEDPDPKGEDIP--LSVVFEDAHVIVIDKPAGLVVHPGAGNWTGTLVNAL 128
Query: 76 QWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
S + P VHR+ + TSG+L+ AKT A +AA FAD
Sbjct: 129 IHHCGDSLSGIGG-VKRPGIVHRIDKDTSGLLVVAKTDQAHQGLAAQFAD 177
>gi|25011477|ref|NP_735872.1| hypothetical protein gbs1435 [Streptococcus agalactiae NEM316]
gi|24413015|emb|CAD47094.1| unknown [Streptococcus agalactiae NEM316]
Length = 296
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ Y+DDD+ +NKP G+ V P T++ L + K SS++ P VHR+
Sbjct: 74 LDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTLVNALMYHI-KDLSSING-VVRPGIVHRI 131
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ TSG+L+ AK A +A DK S+
Sbjct: 132 DKDTSGLLMVAKNDRAHQVLAEELKDKKSL 161
>gi|422022039|ref|ZP_16368548.1| 23S rRNA pseudouridine synthase D [Providencia sneebia DSM 19967]
gi|414097789|gb|EKT59442.1| 23S rRNA pseudouridine synthase D [Providencia sneebia DSM 19967]
Length = 325
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W+ D+P L+V YED+D++ +NKP GL V PG T+L L +R + +
Sbjct: 77 WEPQDIP--LDVVYEDEDILVINKPRGLVVHPGAGNPDGTILNALLYRYPEIVDVPRAGI 134
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
VHRL + T+G+++ AKT A+T +
Sbjct: 135 -----VHRLDKDTTGLMVVAKTVPAQTRLV 159
>gi|407778588|ref|ZP_11125851.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
gi|407299665|gb|EKF18794.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
Length = 338
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 29 LPWKEPDVPYL----LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSS 84
+P EP P LE+ EDD LI +NKP+GL V P T++ L + +
Sbjct: 71 VPEAEPAEPLPENLPLEILCEDDALIVVNKPAGLVVHPAPGNWSGTLVNALLYHCGDTLA 130
Query: 85 SLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
+ P VHRL R TSG+++ AKT A ++ FAD
Sbjct: 131 GIGG-VRRPGIVHRLDRDTSGVMVAAKTDQAHRALSEAFAD 170
>gi|422721981|ref|ZP_16778558.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
gi|315027878|gb|EFT39810.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
Length = 310
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 20 AGSELVYHRLPWKE------PDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
AG E+V +P E D+P L + YED+D+I +NKP G+ V P T++
Sbjct: 64 AGDEIVV-TIPEPEVLDMVAEDIP--LTIVYEDNDVIVVNKPQGMVVHPSVGHPNGTLVN 120
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
L A S+ + P VHR+ + TSG+L+ AK A +A +KTS+
Sbjct: 121 ALLHHADHLSA--INDVVRPGIVHRIDKDTSGLLMVAKNDQAHESLAKQLKEKTSL 174
>gi|309808015|ref|ZP_07701936.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
gi|308168744|gb|EFO70841.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
Length = 311
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + + P VHR+
Sbjct: 83 LDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTKNLAE--CDEIFRPGIVHRI 140
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A+K +
Sbjct: 141 DKDTSGLLMIAKNATARISLEKQLANKIN 169
>gi|323691964|ref|ZP_08106213.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|355628019|ref|ZP_09049548.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
gi|323503973|gb|EGB19786.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|354819987|gb|EHF04418.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
Length = 305
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP G+ V P + T++ L +Q S ++ P VHR+
Sbjct: 79 LDILYEDEDVILINKPKGMVVHPAAGHYEGTLVNGLMHHCREQLSGING-VMRPGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
T+G+L+ K LA IA
Sbjct: 138 DMDTTGVLIVCKNDLAHNSIA 158
>gi|309803986|ref|ZP_07698068.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
gi|309807269|ref|ZP_07701239.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|309809874|ref|ZP_07703724.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|312871741|ref|ZP_07731829.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|312874168|ref|ZP_07734202.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|312875676|ref|ZP_07735677.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|315653539|ref|ZP_07906459.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
gi|325912067|ref|ZP_08174465.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
gi|329920256|ref|ZP_08277040.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
gi|349611433|ref|ZP_08890668.1| hypothetical protein HMPREF1027_00095 [Lactobacillus sp. 7_1_47FAA]
gi|308163905|gb|EFO66170.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
gi|308166329|gb|EFO68538.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
03V1-b]
gi|308169826|gb|EFO71869.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
2503V10-D]
gi|311088930|gb|EFQ47373.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|311090238|gb|EFQ48648.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|311092683|gb|EFQ51039.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
3008A-a]
gi|315488901|gb|EFU78543.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners ATCC 55195]
gi|325476017|gb|EGC79185.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII
143-D]
gi|328936301|gb|EGG32749.1| pseudouridine synthase, RluA family [Lactobacillus iners SPIN
1401G]
gi|348608526|gb|EGY58506.1| hypothetical protein HMPREF1027_00095 [Lactobacillus sp. 7_1_47FAA]
Length = 311
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + + P VHR+
Sbjct: 83 LDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTKNLAK--CDEIFRPGIVHRI 140
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A+K +
Sbjct: 141 DKDTSGLLMIAKNATARISLEKQLANKIN 169
>gi|149187050|ref|ZP_01865357.1| pseudouridine synthase D large subunit [Erythrobacter sp. SD-21]
gi|148829339|gb|EDL47783.1| pseudouridine synthase D large subunit [Erythrobacter sp. SD-21]
Length = 318
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPG 63
K SA + A E + LP EP D+P L+V +ED L+ +NKP+G+ V P
Sbjct: 46 KAARSASAKVAEGERYFIALPPPEPLETVAQDIP--LDVVFEDAYLLVVNKPAGMVVHPA 103
Query: 64 GLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
T++ L + + S ++ A P VHR+ + TSG+L+ AK+ A +A F
Sbjct: 104 AGNPDGTLVNALLHHCAGRLSGINGVA-RPGIVHRIDKDTSGLLVVAKSDAAHEGLAKQF 162
Query: 124 ADKT 127
AD +
Sbjct: 163 ADHS 166
>gi|456062960|ref|YP_007501930.1| Pseudouridine synthase [beta proteobacterium CB]
gi|455440257|gb|AGG33195.1| Pseudouridine synthase [beta proteobacterium CB]
Length = 304
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 21 GSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRAS 80
+ L+Y R +EP++P+ + ++D+ ++ +KP L V P GL+ +T+L +L+ +
Sbjct: 66 NAHLLYFRRLAREPEIPFEEHILFQDEHILVADKPHFLPVTPSGLYLHQTLLNRLKKKTG 125
Query: 81 KQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
Q+ S P+HR+ R T+G+++ + + F D+
Sbjct: 126 IQTLS---------PIHRIDRDTAGLVVFSINPGERAQYQNLFRDRV 163
>gi|424781837|ref|ZP_18208693.1| Ribosomal large subunit pseudouridine synthase D [Campylobacter
showae CSUNSWCD]
gi|421960369|gb|EKU11972.1| Ribosomal large subunit pseudouridine synthase D [Campylobacter
showae CSUNSWCD]
Length = 354
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS--SSLSSQA 90
E +VP + YED+DL+ LNKP+ L V P ++ T+ + W +K S+LS Q+
Sbjct: 93 EFEVP----IIYEDEDLLVLNKPANLVVHPAPSVKEPTL---VDWLGAKGFLLSNLSGQS 145
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ VHRL +GTSG ++ AK A +++ +DK+
Sbjct: 146 RAGI-VHRLDKGTSGAIVVAKNNAAHAALSSQLSDKS 181
>gi|418722035|ref|ZP_13281206.1| RNA pseudouridine synthase [Leptospira borgpetersenii str. UI
09149]
gi|418738135|ref|ZP_13294531.1| RNA pseudouridine synthase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421093254|ref|ZP_15553981.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200801926]
gi|410364217|gb|EKP15243.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200801926]
gi|410741345|gb|EKQ90101.1| RNA pseudouridine synthase [Leptospira borgpetersenii str. UI
09149]
gi|410746309|gb|EKQ99216.1| RNA pseudouridine synthase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456891234|gb|EMG01976.1| RNA pseudouridine synthase [Leptospira borgpetersenii str.
200701203]
Length = 377
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 69
K S L G +VY + KEP V ++ YED+ +A++KP L V P G +++
Sbjct: 55 KKVKSGILLREGDTVVYQPIERKEPPVRKDYKILYEDEFFVAVDKPGDLPVHPAGKYRKG 114
Query: 70 TVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+L L+ S + + VHRL R TSG++L AK A + ++ F+
Sbjct: 115 NLLTLLKE---------SGKFENLFTVHRLDRETSGVVLFAKDSKAASLLSGLFS 160
>gi|377557237|ref|ZP_09786893.1| Pseudouridine synthase [Lactobacillus gastricus PS3]
gi|376166109|gb|EHS85030.1| Pseudouridine synthase [Lactobacillus gastricus PS3]
Length = 304
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + S+++ + P VHR+
Sbjct: 79 LDIVYEDDDVIVVNKPQGMVVHPSAGHPNHTLVNGLLYHSP--LSTINGEFR-PGIVHRI 135
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A +AA KT+
Sbjct: 136 DKDTSGLLMVAKNDHAHQSLAAQLKAKTN 164
>gi|134295824|ref|YP_001119559.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
vietnamiensis G4]
gi|134138981|gb|ABO54724.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
vietnamiensis G4]
Length = 401
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 2 TLIEFYSTKHKNSAPLQGAGSELVYHRLPWK-----EPDVPYLLEVFYEDDDLIALNKPS 56
LI+ K + PL GA ELV LP + EP VP L+V YEDD L+ +NKP+
Sbjct: 96 VLIDGAPAKIRQPVPL-GAKIELVPDLLPEQLAFAAEP-VP--LDVIYEDDALVVINKPA 151
Query: 57 GLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAK 116
GL V P T+L L R ++ L VHRL + TSG+++ A+T A+
Sbjct: 152 GLVVHPAAGNWSGTLLNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLAAQ 207
Query: 117 TCIAAYFADKT 127
T + +T
Sbjct: 208 TDLVRQLQART 218
>gi|209694302|ref|YP_002262230.1| tRNA pseudouridine synthase C [Aliivibrio salmonicida LFI1238]
gi|208008253|emb|CAQ78398.1| tRNA pseudouridine synthase C [Aliivibrio salmonicida LFI1238]
Length = 263
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P LE+ Y DDDLIA+NKP+G+ V L + TV R H P+
Sbjct: 22 PIELEIVYRDDDLIAINKPAGMLVHRSWLDKHETVFAMQTLR--------DQIGQHVFPL 73
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
HRL R TSGIL A + + FA +
Sbjct: 74 HRLDRPTSGILFFALSSAVAAQFSPLFASR 103
>gi|255029306|ref|ZP_05301257.1| hypothetical protein LmonL_09598 [Listeria monocytogenes LO28]
Length = 245
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++++ED D++ +NKP G+ V P T++ L + S + P
Sbjct: 76 DIP--LDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHCDDLSGI--NGKIRPG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +A DKTS
Sbjct: 132 IVHRIDKDTSGLLMVAKNDHAHESLAKQLKDKTS 165
>gi|90422129|ref|YP_530499.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB18]
gi|90104143|gb|ABD86180.1| ribosomal large subunit pseudouridine synthase D [Rhodopseudomonas
palustris BisB18]
Length = 391
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I ++KP GL V P + T++ L S + P VHRL
Sbjct: 143 LDIVYEDDDIIVIDKPKGLVVHPAAGHETGTLVNALIAHCGNSLSGIGG-VRRPGIVHRL 201
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ T+G+++ AK A ++ FAD
Sbjct: 202 DKDTTGLMVVAKNDKAHKSLSEQFAD 227
>gi|379727342|ref|YP_005319527.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius DAT561]
gi|376318245|dbj|BAL62032.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius DAT561]
Length = 302
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED D++ +NKP G+ V P + T++ L + SS + P VHR+
Sbjct: 79 LDIVYEDQDVVVINKPQGMVVHPSAGHFKGTMVHALLYHIKDLSS--INDVIRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK A +A DKT
Sbjct: 137 DKDTSGLLIVAKNNQAHEALAKQLKDKT 164
>gi|227824343|ref|ZP_03989175.1| pseudouridine synthase [Acidaminococcus sp. D21]
gi|226904842|gb|EEH90760.1| pseudouridine synthase [Acidaminococcus sp. D21]
Length = 311
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP+ P L + YED+D+I +NKP G+ V P T++ L + K S ++
Sbjct: 78 EPE-PIPLAILYEDEDVIVVNKPRGMVVHPAAGNYTGTLVNALLYHC-KDLSGING-VVR 134
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHRL + TSG+++CAK A ++ DK +
Sbjct: 135 PGIVHRLDKDTSGVMVCAKNDRAHLSLSQQIKDKEA 170
>gi|323486916|ref|ZP_08092232.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
gi|323399779|gb|EGA92161.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
Length = 305
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+D+I +NKP G+ V P + T++ L +Q S ++ P VHR+
Sbjct: 79 LDILYEDEDVILINKPKGMVVHPAAGHYEGTLVNGLMHHCREQLSGING-VMRPGIVHRI 137
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
T+G+L+ K LA IA
Sbjct: 138 DMDTTGVLIVCKNDLAHNSIA 158
>gi|154486935|ref|ZP_02028342.1| hypothetical protein BIFADO_00768 [Bifidobacterium adolescentis
L2-32]
gi|154084798|gb|EDN83843.1| RNA pseudouridine synthase [Bifidobacterium adolescentis L2-32]
Length = 241
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 32 KEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS 91
+EP +P+ EV YED+ +I ++KP L P G++ + T L +L+ R +
Sbjct: 3 EEPHIPFEYEVLYEDERIIVIDKPHFLATTPRGMWYRETALIRLRERCGEPDI------- 55
Query: 92 HPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
VP HRL R T+G+++ + + F + +V
Sbjct: 56 --VPAHRLDRPTAGVVVFVRDPAVRGAYQMLFQNHMAV 91
>gi|410102929|ref|ZP_11297854.1| RluA family pseudouridine synthase [Parabacteroides sp. D25]
gi|409238056|gb|EKN30851.1| RluA family pseudouridine synthase [Parabacteroides sp. D25]
Length = 548
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDD L+ +NKP+G+ +PG +V +L+ L A+ P+ VHRL
Sbjct: 339 LDILYEDDYLLIVNKPAGMLSVPGK-GDADSVYHRLRI--------LYPDATGPIIVHRL 389
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
TSG+LL AKTK A + A F ++T
Sbjct: 390 DMATSGLLLAAKTKEAHQNLQAQFKNRT 417
>gi|352684044|ref|YP_004896028.1| pseudouridine synthase [Acidaminococcus intestini RyC-MR95]
gi|350278698|gb|AEQ21888.1| pseudouridine synthase [Acidaminococcus intestini RyC-MR95]
Length = 318
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP+ P L + YED+D+I +NKP G+ V P T++ L + K S ++
Sbjct: 85 EPE-PIPLAILYEDEDVIVVNKPRGMVVHPAAGNYTGTLVNALLYHC-KDLSGING-VVR 141
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
P VHRL + TSG+++CAK A ++ DK +
Sbjct: 142 PGIVHRLDKDTSGVMVCAKNDRAHLSLSQQIKDKEA 177
>gi|312872998|ref|ZP_07733058.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|325912701|ref|ZP_08175084.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
gi|311091520|gb|EFQ49904.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|325478122|gb|EGC81251.1| pseudouridine synthase, RluA family [Lactobacillus iners UPII 60-B]
Length = 311
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YEDDD+I +NKP G+ V P T++ L + + + P VHR+
Sbjct: 83 LDIIYEDDDVIVVNKPQGMVVHPSAGHPDHTLVNGLIYHTKNLAK--CDEIFRPGIVHRI 140
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+ AK A+ + A+K +
Sbjct: 141 DKDTSGLLMIAKNATARISLEKQLANKIN 169
>gi|255522642|ref|ZP_05389879.1| hypothetical protein LmonocFSL_15771 [Listeria monocytogenes FSL
J1-175]
Length = 279
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++++ED D++ +NKP G+ V P T++ L + S + P
Sbjct: 76 DIP--LDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHCDDLSGI--NGKIRPG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
VHR+ + TSG+L+ AK A +A DKTS
Sbjct: 132 IVHRIDKDTSGLLMVAKNDHAHESLAKQLKDKTS 165
>gi|336113719|ref|YP_004568486.1| RluA family pseudouridine synthase [Bacillus coagulans 2-6]
gi|335367149|gb|AEH53100.1| pseudouridine synthase, RluA family [Bacillus coagulans 2-6]
Length = 303
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 12 KNSAPLQGAGSELVYHRLPWKEPDVPYL------LEVFYEDDDLIALNKPSGLQVLPGGL 65
K A + +LV +P EP++P + L+++YED D++ +NKP G+ V P
Sbjct: 48 KEKANYRCQAGDLVEIEVP--EPELPDIEPEDLHLDIYYEDADVLVVNKPKGMVVHPSNG 105
Query: 66 FQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
T++ L + K S ++ P VHR+ + TSG+L+ AK A +AA ++
Sbjct: 106 HFTGTLVNGLMYHC-KDLSGING-VLRPGIVHRIDKDTSGLLMVAKNDYAHEKLAAQLSE 163
Query: 126 KT 127
KT
Sbjct: 164 KT 165
>gi|116328674|ref|YP_798394.1| pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116121418|gb|ABJ79461.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 377
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 10 KHKNSAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 69
K S L G +VY + KEP V ++ YED+ +A++KP L V P G +++
Sbjct: 55 KKVKSGILLREGDTVVYQPIERKEPPVRKDYKILYEDEFFVAVDKPGDLPVHPAGKYRKG 114
Query: 70 TVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124
+L L+ S + + VHRL R TSG++L AK A + ++ F+
Sbjct: 115 NLLTLLKE---------SGKFENLFTVHRLDRETSGVVLFAKDSKAASLLSGLFS 160
>gi|332686651|ref|YP_004456425.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius ATCC 35311]
gi|332370660|dbj|BAK21616.1| ribosomal large subunit pseudouridine synthase D [Melissococcus
plutonius ATCC 35311]
Length = 302
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED D++ +NKP G+ V P + T++ L + SS + P VHR+
Sbjct: 79 LDIVYEDQDVVVINKPQGMVVHPSAGHFKGTMVHALLYHIKDLSS--INDVIRPGIVHRI 136
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ TSG+L+ AK A +A DKT
Sbjct: 137 DKDTSGLLIVAKNNQAHEALAKQLKDKT 164
>gi|393768295|ref|ZP_10356836.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392726419|gb|EIZ83743.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 326
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDDL+ ++KP+GL V P + T++ L S + P VHRL
Sbjct: 83 LAIAYEDDDLVVIDKPAGLVVHPAPGHESGTLVNALIAHCGASLSGIGG-VRRPGIVHRL 141
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFAD 125
+ TSG+++ AK A + A FAD
Sbjct: 142 DKDTSGLIVVAKNDAAHQGLTAQFAD 167
>gi|322705188|gb|EFY96776.1| DRAP deaminase [Metarhizium anisopliae ARSEF 23]
Length = 513
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 23 ELVYHRLPWKEPDVPY-LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+L+ H L EP V + + +EDDD+I +NKPSG+ V P G ++ +VL+ ++
Sbjct: 139 DLISHTLHRHEPPVTSDPVGIIHEDDDMIVINKPSGVPVHPAGRYKFNSVLEIMK----- 193
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ Q P P +RL R TSGI+ AK+ A + +T
Sbjct: 194 ---AERGQEFMPYPCNRLDRLTSGIMFVAKSVKAAEALGNQIKSRT 236
>gi|313668670|ref|YP_004048954.1| pseudouridine synthase (rna-uridine isomerase) (rna pseudouridylat
synthase) [Neisseria lactamica 020-06]
gi|313006132|emb|CBN87593.1| pseudouridine synthase (rna-uridine isomerase) (rna pseudouridylat
synthase) [Neisseria lactamica 020-06]
Length = 307
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 33 EPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
EP +P+ ++ + D LI ++KP L V+P G F + T+L +L+ R Q ++
Sbjct: 88 EPRIPFEEKILHIDGHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDIT-- 145
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
P+HRL + T+G++L + + F +KT
Sbjct: 146 --PLHRLDKDTAGVMLLSHNPATRGAYQTMFQNKT 178
>gi|171678031|ref|XP_001903966.1| hypothetical protein [Podospora anserina S mat+]
gi|170937084|emb|CAP61743.1| unnamed protein product [Podospora anserina S mat+]
Length = 479
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 23 ELVYHRLPWKEPDVPY-LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+LV H EP V ++V +EDDD+I +NKPSG+ V P G + +V++ ++ ++
Sbjct: 126 DLVSHTTHRHEPPVTQDPVQVIHEDDDMIVINKPSGVPVHPAGRYHYNSVVEIMK---AE 182
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAA 121
+ + + P P +RL R TSGI+ AKT A ++A
Sbjct: 183 RGPTFA-----PRPCNRLDRLTSGIMFIAKTAKAAESLSA 217
>gi|420252911|ref|ZP_14755979.1| pseudouridine synthase, RluA family [Burkholderia sp. BT03]
gi|398052952|gb|EJL45183.1| pseudouridine synthase, RluA family [Burkholderia sp. BT03]
Length = 427
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 4 IEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQV 60
++ K ++ PL GA ELV LP + P+ P L++ YEDD L+ +NKP+GL V
Sbjct: 109 VDGQPAKIRHPVPL-GASIELVPDLLPEQLAFTPE-PVPLDIVYEDDTLVVINKPAGLVV 166
Query: 61 LPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
P TVL L R ++ L VHRL + TSG+++ A+T A+T +
Sbjct: 167 HPAAGNWSGTVLNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLEAQTDLV 222
Query: 121 AYFADKT 127
+T
Sbjct: 223 RQLQART 229
>gi|419799995|ref|ZP_14325308.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
gi|385696494|gb|EIG26975.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
Length = 296
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
+ ++ D+P L++ YED D++ +NKP G+ V P T++ L + K S ++
Sbjct: 65 VSYEAEDLP--LDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTLVNALLYHV-KDLSGING 121
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSV 129
+ P VHR+ + TSG+L+ AK A +A DK S+
Sbjct: 122 ELR-PGIVHRIDKDTSGLLMVAKNDQAHVALAEELKDKKSL 161
>gi|393760476|ref|ZP_10349286.1| pseudouridine synthase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393161333|gb|EJC61397.1| pseudouridine synthase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 308
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 24 LVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQS 83
L Y R+ KE VP+ + + Y D+ LIA++KP L PGG + T L +L+ +
Sbjct: 76 LWYFRMVDKETIVPFEMPILYADECLIAVDKPHFLATTPGGRYLHETALSRLRKHFKEDG 135
Query: 84 SSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
S P+HRL R T+GILL + A+ + F
Sbjct: 136 IS---------PIHRLDRETAGILLFCRDPSARGAYQSLF 166
>gi|390572002|ref|ZP_10252229.1| RluA family pseudouridine synthase [Burkholderia terrae BS001]
gi|389935985|gb|EIM97886.1| RluA family pseudouridine synthase [Burkholderia terrae BS001]
Length = 427
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 4 IEFYSTKHKNSAPLQGAGSELVYHRLPWK---EPDVPYLLEVFYEDDDLIALNKPSGLQV 60
++ K ++ PL GA ELV LP + P+ P L++ YEDD L+ +NKP+GL V
Sbjct: 109 VDGQPAKIRHPVPL-GASIELVPDLLPEQLAFTPE-PVPLDIVYEDDTLVVINKPAGLVV 166
Query: 61 LPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120
P TVL L R ++ L VHRL + TSG+++ A+T A+T +
Sbjct: 167 HPAAGNWSGTVLNGLLHRYGDAAAGLPRAGI----VHRLDKETSGLMVVARTLEAQTDLV 222
Query: 121 AYFADKT 127
+T
Sbjct: 223 RQLQART 229
>gi|328952411|ref|YP_004369745.1| RluA family pseudouridine synthase [Desulfobacca acetoxidans DSM
11109]
gi|328452735|gb|AEB08564.1| pseudouridine synthase, RluA family [Desulfobacca acetoxidans DSM
11109]
Length = 331
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W P L++ YED+DL+ALNKP GL V PG T++ L Q
Sbjct: 83 WHLAPEPIPLKILYEDEDLLALNKPPGLTVHPGAGQSSGTLVNALLHHCPDLGGIGDVQ- 141
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P VHRL + TSG+++ AKT A + F ++
Sbjct: 142 -RPGLVHRLDKDTSGVMVVAKTDRAHQALIKQFKNR 176
>gi|119384947|ref|YP_916003.1| RluA family pseudouridine synthase [Paracoccus denitrificans
PD1222]
gi|119374714|gb|ABL70307.1| ribosomal large subunit pseudouridine synthase D [Paracoccus
denitrificans PD1222]
Length = 341
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 30 PWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ 89
P + P L V YED +LI ++KP+G+ V P T++ L + S +
Sbjct: 72 PLEAQPEPIPLAVAYEDAELIVVDKPAGMVVHPAPGAPSGTLVNALLAHCAGSLSGIGG- 130
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
A+ P VHR+ + TSG+L+ AKT A +A FAD T+
Sbjct: 131 AARPGIVHRIDKETSGLLVVAKTDRAHQGLARQFADHTA 169
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,063,560,429
Number of Sequences: 23463169
Number of extensions: 76557997
Number of successful extensions: 188385
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 8239
Number of HSP's that attempted gapping in prelim test: 176675
Number of HSP's gapped (non-prelim): 10638
length of query: 133
length of database: 8,064,228,071
effective HSP length: 98
effective length of query: 35
effective length of database: 10,059,804,805
effective search space: 352093168175
effective search space used: 352093168175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)