BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041166
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M721|PUS5_ARATH RNA pseudourine synthase 5 OS=Arabidopsis thaliana GN=At3g52260
PE=2 SV=2
Length = 369
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 111/155 (71%), Gaps = 26/155 (16%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
T+ EFY TK+K+SAPL G +GS+LVY RLPWKEPD
Sbjct: 34 TVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDT 93
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS-HPVP 95
PY LEV YEDDDLIALNKPSGLQVLPGGLFQQRTVL QLQW K S + S+ S HPVP
Sbjct: 94 PYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVP 153
Query: 96 VHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130
VHRLGRGTSGILLCAKTKLAKT +AAYFA+ TS+V
Sbjct: 154 VHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLV 188
>sp|Q0DST9|PUS5_ORYSJ RNA pseudourine synthase 5 OS=Oryza sativa subsp. japonica
GN=Os03g0288500 PE=2 SV=2
Length = 397
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 106/153 (69%), Gaps = 29/153 (18%)
Query: 2 TLIEFYSTKHKNSAPLQG-------------------------AGSELVYHRLPWKEPDV 36
TLIEFYST +K+SAPL G GS+LVYHRLPW+EP
Sbjct: 51 TLIEFYSTSYKSSAPLPGWIKRIRDGQITVDGEVATDPDMILREGSKLVYHRLPWQEPFA 110
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQ----ASH 92
P+LL+V YEDDD+IALNKPSGLQVLP GLFQQRTVL QLQ + K SS S+ SH
Sbjct: 111 PHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMPSSFCSKRKDAQSH 170
Query: 93 PVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
PVPVHRLGRGTSG+LLCAKTKLAK +AAYFA+
Sbjct: 171 PVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAE 203
>sp|P72970|Y1592_SYNY3 Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1592 PE=3 SV=1
Length = 291
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 10/112 (8%)
Query: 14 SAPLQGAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLK 73
+ PLQ AG L Y R PW EP+VP L V + D+DL A++KPSGL VLPGG F TVL+
Sbjct: 36 TYPLQ-AGQTLTYWRSPWVEPEVPLQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLE 94
Query: 74 QLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFAD 125
QL+ + ++S P+HRLG GTSG+LL ++ L + ++ F +
Sbjct: 95 QLKIQYPQESL---------FPLHRLGTGTSGLLLLGRSTLGRRELSRQFRE 137
>sp|P50513|RLUD_ZYMMO Ribosomal large subunit pseudouridine synthase D OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rluD PE=3 SV=2
Length = 317
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 28 RLPWKEP-DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSL 86
R EP D+P LE+ +ED+ L+ +NKP+G+ V P T++ L + + + S +
Sbjct: 71 RPAHNEPQDIP--LEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGI 128
Query: 87 SSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
A P VHR+ + TSG+L+ AKT A +AA FAD +
Sbjct: 129 GGVAR-PGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHS 168
>sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=rluD PE=3 SV=2
Length = 326
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
+ + YED ++I LNKP G+ PG TV+ L + + + + P VHRL
Sbjct: 84 IAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ TSG+L+CAK +A F DK +
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKRT 172
>sp|Q9KU20|RLUD_VIBCH Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluD PE=3 SV=1
Length = 324
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W+ D+P L + YEDDD+I +NKP V PG +TVL L + S ++
Sbjct: 77 WEAQDLP--LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSP-----IAEV 129
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQT 156
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
+ YEDD ++ LNKPSG V G L++ A + +L QA VHR+ R
Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGS---------GLKFGAIEALRALRPQARFLELVHRIDR 146
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKT 127
TSGILL AK + A + A F +KT
Sbjct: 147 DTSGILLVAKKRSALRHLQAQFREKT 172
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
+ YEDD L+ LNKPSG V G L + A + +L QA VHR+ R
Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGS---------GLHFGAIEALRALRPQARFLELVHRIDR 147
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKT 127
TSGILL AK + A + A F +KT
Sbjct: 148 DTSGILLVAKKRSALRHLQAQFREKT 173
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YED+ ++ ++KP+GL V PG RT++ L +R +L+S V
Sbjct: 87 DIP--LSVLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFR----DPALASVPRAGV 140
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCI 119
VHRL + TSG+++ A+T A+T +
Sbjct: 141 -VHRLDKDTSGVMVVARTVQAQTAL 164
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
+ YEDD L+ LNKPSG V G L++ A + +L +A VHR+ R
Sbjct: 96 IIYEDDHLLVLNKPSGTAVHGGS---------GLKFGAIEALRALRPEARFLELVHRIDR 146
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKT 127
TSGILL AK + A + A F +KT
Sbjct: 147 DTSGILLVAKKRSALRHLQAQFREKT 172
>sp|Q8FL93|RLUA_ECOL6 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluA
PE=3 SV=3
Length = 219
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR-TVLKQLQWRASKQSSSLSSQ 89
+ P P+L+ V Y+DD ++ +NKPSGL +PG L + + +V+ ++Q R Q+ S
Sbjct: 6 YNPPQEPWLV-VLYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-RDYPQAES---- 59
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL TSG+++ A TK A+ + F ++
Sbjct: 60 ------VHRLDMATSGVIVVALTKAAERELKRQFRER 90
>sp|Q8DEV0|RLUD_VIBVU Ribosomal large subunit pseudouridine synthase D OS=Vibrio
vulnificus (strain CMCP6) GN=rluD PE=3 SV=1
Length = 325
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W+ D+P L++ YEDDD++ +NKP V PG TVL L + + ++
Sbjct: 77 WEAQDIP--LDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFHCPE-----VAEV 129
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQT 156
>sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1
Length = 327
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ YED+ LI +NKP+GL V PG TV+ L + Q P VHRL
Sbjct: 98 LDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQ--RPGIVHRL 155
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128
+ T+G ++ AKT+LA + +KT+
Sbjct: 156 DKDTTGAMVVAKTELALHNLQVQLKEKTA 184
>sp|Q8XA10|RLUA_ECO57 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O157:H7 GN=rluA PE=3 SV=3
Length = 219
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR-TVLKQLQWRASKQSSSLSSQ 89
+ P P+L+ + Y+DD ++ +NKPSGL +PG L + + +V+ ++Q R Q+ S
Sbjct: 6 YNPPQEPWLV-ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-RDYPQAES---- 59
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL TSG+++ A TK A+ + F ++
Sbjct: 60 ------VHRLDMATSGVIVVALTKAAERELKRQFRERV 91
>sp|P0AA38|RLUA_SHIFL Ribosomal large subunit pseudouridine synthase A OS=Shigella
flexneri GN=rluA PE=3 SV=2
Length = 219
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR-TVLKQLQWRASKQSSSLSSQ 89
+ P P+L+ + Y+DD ++ +NKPSGL +PG L + + +V+ ++Q R Q+ S
Sbjct: 6 YNPPQEPWLV-ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-RDYPQAES---- 59
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL TSG+++ A TK A+ + F ++
Sbjct: 60 ------VHRLDMATSGVIVVALTKAAERELKRQFRER 90
>sp|P0AA37|RLUA_ECOLI Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli (strain K12) GN=rluA PE=1 SV=2
Length = 219
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 13/97 (13%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR-TVLKQLQWRASKQSSSLSSQ 89
+ P P+L+ + Y+DD ++ +NKPSGL +PG L + + +V+ ++Q R Q+ S
Sbjct: 6 YNPPQEPWLV-ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-RDYPQAES---- 59
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL TSG+++ A TK A+ + F ++
Sbjct: 60 ------VHRLDMATSGVIVVALTKAAERELKRQFRER 90
>sp|Q45480|YLYB_BACSU Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus
subtilis (strain 168) GN=ylyB PE=3 SV=3
Length = 303
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L+++YED D++ +NKP G+ V P T++ L + S + P V
Sbjct: 77 PMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCTDLSG--INGVMRPGIV 134
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
HR+ + TSG+L+ AK +A + +KT
Sbjct: 135 HRIDKDTSGLLMVAKNDMAHESLVNQLVNKT 165
>sp|O50310|Y723_CHLP8 Uncharacterized RNA pseudouridine synthase Cpar_0723
OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723
PE=3 SV=1
Length = 327
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P + + YEDDDL+ ++K +G+ V P T+ + K + L P
Sbjct: 74 DIP--ITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPG 131
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL + TSG+++ AK A +A FA++
Sbjct: 132 IVHRLDKDTSGLIIIAKNPTALHKLARQFANR 163
>sp|Q87S65|RLUD_VIBPA Ribosomal large subunit pseudouridine synthase D OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluD PE=3 SV=1
Length = 325
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W+ D+P L++ YEDDD+I +NKP V PG TVL L ++
Sbjct: 77 WEAQDIP--LDIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLHHYPD-----IAEV 129
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQT 156
>sp|P57481|RLUD_BUCAI Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluD PE=3 SV=1
Length = 312
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 35 DVP--YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASH 92
D+P L++ YED D++ +NKP+GL V PG + T+L L + K S L
Sbjct: 77 DIPENIFLDIVYEDSDILIINKPAGLVVHPGSGNKSGTILNALLYHY-KNSKDLPRAGI- 134
Query: 93 PVPVHRLGRGTSGILLCAKT 112
VHRL + TSG+++ AK
Sbjct: 135 ---VHRLDKDTSGLMVIAKN 151
>sp|Q8K9E9|RLUD_BUCAP Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluD PE=3 SV=1
Length = 315
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVP---- 95
L YED +++ +NKP GL V PG Q T+L L +R + SS +P
Sbjct: 84 LNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISS---------IPRCGI 134
Query: 96 VHRLGRGTSGILLCAKT 112
+HRL + TSG+++ AKT
Sbjct: 135 IHRLDKDTSGLMVIAKT 151
>sp|Q8DCG0|RLUA_VIBVU Ribosomal large subunit pseudouridine synthase A OS=Vibrio
vulnificus (strain CMCP6) GN=rluA PE=3 SV=1
Length = 250
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 41 EVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLG 100
E+ +EDD ++A+NKPSGL +PG L + + W S L Q VHRL
Sbjct: 15 EIIFEDDHILAVNKPSGLLSVPGRLPEHHDSM----W------SRLQEQYPEIQVVHRLD 64
Query: 101 RGTSGILLCAKTKLAKTCIAAYF 123
TSG+++ AK K A+ + F
Sbjct: 65 MSTSGLMVFAKNKRAEAALKKQF 87
>sp|Q8XYX8|RLUD_RALSO Ribosomal large subunit pseudouridine synthase D OS=Ralstonia
solanacearum (strain GMI1000) GN=rluD PE=3 SV=1
Length = 358
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L+V YEDD L+ +NKP+GL V P TVL L R Q++ L V
Sbjct: 113 PVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHR-YPQAAGLPRAGI----V 167
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
HRL + TSG+++ A+T A+T + +T
Sbjct: 168 HRLDKETSGLMVVARTLPAQTDLVRQLQART 198
>sp|Q12069|PUS9_YEAST tRNA pseudouridine(32) synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PUS9 PE=1
SV=1
Length = 462
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 11/91 (12%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+L+ H++ EP V ++V +EDD+++ ++KPSG+ V P G ++ T+ K LQ
Sbjct: 170 DLITHQVHRHEPPVTSRPIKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQ----- 224
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKT 112
++L + P +RL R TSG++ AKT
Sbjct: 225 --NNLGFVVN---PCNRLDRLTSGLMFLAKT 250
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L V YEDD ++ ++KP+GL V PG T++ L +R +L++ V
Sbjct: 87 DIP--LNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFR----DPNLAAVPRAGV 140
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCI 119
VHRL + TSG+++ A+T A+T +
Sbjct: 141 -VHRLDKDTSGVMVVARTLQAQTAL 164
>sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rluD PE=3 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L++ YEDD +I +NKP+GL V P T+L L + SQ V
Sbjct: 102 PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPEL-----SQVPRAGIV 156
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
HRL + TSG+++ AKT A+ + ++T
Sbjct: 157 HRLDKETSGLMVVAKTLPAQNSLVRQLQERT 187
>sp|P59840|TRUC_HAEDU tRNA pseudouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=truC PE=3 SV=1
Length = 243
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQAS-HPVPVHR 98
L++ Y DD+LIA+NKP+G+ V L + T+ +L Q + H P+HR
Sbjct: 3 LDILYRDDELIAINKPAGMLVHRSWLDKAETLFAM---------QTLRDQINQHVFPIHR 53
Query: 99 LGRGTSGILLCA 110
L R TSG+LL A
Sbjct: 54 LDRPTSGVLLFA 65
>sp|Q9PET9|RLUD_XYLFA Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain 9a5c) GN=rluD PE=3 SV=1
Length = 331
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ + LNKP+GL V PG T++ L R +L++ V
Sbjct: 87 DIP--LDILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNALLHR----DPALAAVPRAGV 140
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL + TSG+++ A+T A+T + + +
Sbjct: 141 -VHRLDKDTSGVMVVARTLQAQTALVEQLSSR 171
>sp|Q87LD3|RLUA_VIBPA Ribosomal large subunit pseudouridine synthase A OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluA PE=3 SV=1
Length = 250
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSS 88
L + P P+ ++ +EDD ++A+NKPSGL +PG L + + W S L
Sbjct: 4 LEYNPPTDPWT-DIVFEDDHILAVNKPSGLLSVPGRLAEHHDSM----W------SRLQE 52
Query: 89 QASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123
+ VHRL TSG+++ AK K A++ + F
Sbjct: 53 EYPDIQVVHRLDMSTSGLMVLAKNKRAESALKKQF 87
>sp|Q8Z9J5|RLUA_SALTI Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhi GN=rluA PE=3 SV=3
Length = 219
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR-TVLKQLQWRASKQSSSLSSQ 89
+ P P+L+ + Y+D+ ++ +NKPSGL +PG L + +++ ++Q R Q+ S
Sbjct: 6 YNPPQEPWLV-ILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQ-RDYPQAES---- 59
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL TSG+++ A TK A+ + F ++
Sbjct: 60 ------VHRLDMATSGVIVVALTKAAERELKRQFRER 90
>sp|Q8ZRV9|RLUA_SALTY Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluA PE=3 SV=3
Length = 219
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR-TVLKQLQWRASKQSSSLSSQ 89
+ P P+L+ + Y+D+ ++ +NKPSGL +PG L + +++ ++Q R Q+ S
Sbjct: 6 YNPPQEPWLV-ILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQ-RDYPQAES---- 59
Query: 90 ASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL TSG+++ A TK A+ + F ++
Sbjct: 60 ------VHRLDMATSGVIVVALTKAAERELKRQFRER 90
>sp|Q82WZ5|RLUD_NITEU Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3
SV=1
Length = 344
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L++ +EDD LI ++KP+GL V PG T+L L A + SQ VHRL
Sbjct: 109 LKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQ-----LSQVPRAGIVHRL 163
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKT 127
+ T+G+L+ AKT A+ +A +T
Sbjct: 164 DKDTTGLLVVAKTIEAQFDLARQLQQRT 191
>sp|P59831|RLUA_HAEDU Ribosomal large subunit pseudouridine synthase A OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluA PE=3 SV=1
Length = 222
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 29 LPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQ-QRTVLKQLQWRASKQSSSLS 87
+ + P P+L EV Y D+ ++ +NKPSGL +PG + +V+ ++Q R
Sbjct: 4 IEYHPPLNPFLEEV-YRDNHIVVINKPSGLLSVPGNRPEYYDSVMTRVQQRYGFAE---- 58
Query: 88 SQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
P HRL TSGI+L A +K+A+ + F D+
Sbjct: 59 -------PAHRLDMATSGIILLALSKVAEKELKRQFRDR 90
>sp|Q9JVB6|RLUD_NEIMA Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rluD PE=3 SV=1
Length = 374
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 37 PYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPV 96
P L++ YEDD +I +NKP+GL V P T+L L + SQ V
Sbjct: 102 PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPEL-----SQIPRAGIV 156
Query: 97 HRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
HRL + TSG+++ AKT A+ + ++T
Sbjct: 157 HRLDKETSGLMVVAKTLPAQNSLVWQLQERT 187
>sp|Q12362|RIB2_YEAST Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIB2 PE=1 SV=1
Length = 591
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 23 ELVYHRLPWKEPDVPYL-LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
+L+ H++ EP V +++ +ED+D++ ++KPS + V P G ++ T+ K L+
Sbjct: 143 DLITHKVHRHEPPVTSKPIDIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLE----- 197
Query: 82 QSSSLSSQASHPV-PVHRLGRGTSGILLCAKTKLA 115
Q + V P +RL + TSG++ AKT L
Sbjct: 198 ------RQLGYSVHPCNRLDKPTSGLMFLAKTPLG 226
>sp|Q1RJX7|RLUC_RICBR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
bellii (strain RML369-C) GN=rluC PE=3 SV=1
Length = 301
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
+ YEDD++IA+NKP+GL GG +V L++ L+SQ + VHRL +
Sbjct: 91 LIYEDDNIIAINKPAGLAT-QGGSKINLSVDSALKY--------LNSQGADFKLVHRLDK 141
Query: 102 GTSGILLCAKTKLAKTCIAAYFADK 126
TSG+LL AK ++ + F +K
Sbjct: 142 ETSGLLLIAKNYVSSVKLHDAFKEK 166
>sp|Q87AR7|RLUD_XYLFT Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rluD PE=3
SV=1
Length = 331
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+ + +NKP+GL V PG T++ L R +L++ V
Sbjct: 87 DIP--LDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHR----DPALAAVPRAGV 140
Query: 95 PVHRLGRGTSGILLCAKTKLAKTCIAAYFADK 126
VHRL + TSG+++ A+T A+T + + +
Sbjct: 141 -VHRLDKDTSGVMVVARTLQAQTALVEQLSSR 171
>sp|P44445|RLUD_HAEIN Ribosomal large subunit pseudouridine synthase D OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluD PE=3 SV=1
Length = 324
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YEDDD+I +NKP L V PG TVL L + + VHRL
Sbjct: 83 LNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGI-----VHRL 137
Query: 100 GRGTSGILLCAKTKLAKTCIA 120
+ T+G+++ AKT A+T +
Sbjct: 138 DKDTTGLMVVAKTIPAQTKLV 158
>sp|Q9LT72|PUS4_ARATH RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana
GN=At3g19440 PE=2 SV=1
Length = 477
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
V Y+D +I LNKP GL V G +T + +L K S S P VHRL R
Sbjct: 185 VLYKDPAIIVLNKPHGLAVQGGSGI--KTSIDELAASCLKFDKSES-----PRLVHRLDR 237
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKTSVVDA 132
SG+L+ A+T+ A T + + F +KT+ A
Sbjct: 238 DCSGLLVLARTQTAATVLHSIFREKTTGASA 268
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 22 SELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81
SE ++ ++P + + L++ YED+ ++ +NKP+GL P + ++L + +
Sbjct: 62 SEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCNH 121
Query: 82 QSSSLSSQASHPVPVHRLGRGTSGILLCAKTK 113
Q L VHRL R TSG+++ AK +
Sbjct: 122 QPVFL---------VHRLDRDTSGVIMLAKNQ 144
>sp|Q8ZBV7|RLUD_YERPE Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis
GN=rluD PE=3 SV=1
Length = 325
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W ++P L++ YED+D++ +NKP GL V PG TVL L + +
Sbjct: 77 WAPQEIP--LDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGI 134
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 -----VHRLDKDTTGLMVVAKTVPAQT 156
>sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluD PE=3 SV=2
Length = 320
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 31 WKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQA 90
W D+ LE+ YED+ ++ ++KP+GL V P Q T+L L + ++ +
Sbjct: 76 WLAQDIE--LEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGI 133
Query: 91 SHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKT 127
VHRL + T+G+++ AKT A T + A ++
Sbjct: 134 -----VHRLDKDTTGLMVVAKTLEAHTKLVAQLQARS 165
>sp|P59838|RLUD_BLOFL Ribosomal large subunit pseudouridine synthase D OS=Blochmannia
floridanus GN=rluD PE=3 SV=1
Length = 321
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
L + YED+D++ +NK S + V PG Q TVL L +R +S QA V RL
Sbjct: 86 LNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYP-SILKISKQAG---IVQRL 141
Query: 100 GRGTSGILLCAKTKLAKTCIAAYFADKTSVVDAD 133
+ T+G+++ AKT A + F + V + D
Sbjct: 142 DKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYD 175
>sp|P47451|Y209_MYCGE Uncharacterized RNA pseudouridine synthase MG209 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG209 PE=3 SV=1
Length = 308
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 40 LEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRL 99
LEV +ED DL+ +NKPSGL P ++ ++L + +K L VHRL
Sbjct: 80 LEVLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACIFHNNKNPVYL---------VHRL 130
Query: 100 GRGTSGILLCAKTK 113
R TSG ++ K +
Sbjct: 131 DRDTSGAIVVCKNQ 144
>sp|O67638|Y1758_AQUAE Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex
aeolicus (strain VF5) GN=aq_1758 PE=3 SV=1
Length = 316
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 21 GSELVYHRLPWKEP------DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQ 74
G ++ H +P EP ++P + + YED+D+ + KP GL V P + T++
Sbjct: 60 GERVILH-VPEPEPLDVKPENIP--INIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNA 116
Query: 75 LQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTS 128
L + SS P VHRL + T+G+++ AK A + F ++ +
Sbjct: 117 LLYHIKDLSS--IGGVERPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKT 168
>sp|Q4UKQ3|RLUC_RICFE Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=rluC PE=3
SV=1
Length = 305
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 42 VFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGR 101
+ YEDD+LIA+NKP+GL GG ++ L++ L+ + + VHRL +
Sbjct: 91 LIYEDDNLIAINKPAGLAT-QGGSKINLSIDSALKY--------LNYKGADFKLVHRLDK 141
Query: 102 GTSGILLCAKTKLAKTCIAAYFADKTSV 129
TSG+LL AK L+ + F +K V
Sbjct: 142 ETSGLLLIAKNYLSNVKLHDAFKEKLVV 169
>sp|P65836|RLUD_SALTY Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluD PE=1 SV=2
Length = 326
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD++ +NKP L V PG TVL L + +
Sbjct: 81 DIP--LDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI---- 134
Query: 95 PVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 -VHRLDKDTTGLMVVAKTVPAQT 156
>sp|P65837|RLUD_SALTI Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhi GN=rluD PE=3 SV=2
Length = 326
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YEDDD++ +NKP L V PG TVL L + +
Sbjct: 81 DIP--LDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI---- 134
Query: 95 PVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 -VHRLDKDTTGLMVVAKTVPAQT 156
>sp|P65835|RLUD_SHIFL Ribosomal large subunit pseudouridine synthase D OS=Shigella
flexneri GN=rluD PE=3 SV=2
Length = 326
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+D+I +NKP L V PG TVL L + +
Sbjct: 81 DIP--LDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI---- 134
Query: 95 PVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 -VHRLDKDTTGLMVVAKTVPAQT 156
>sp|P65834|RLUD_ECOL6 Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluD
PE=3 SV=2
Length = 326
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 35 DVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPV 94
D+P L++ YED+D+I +NKP L V PG TVL L + +
Sbjct: 81 DIP--LDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI---- 134
Query: 95 PVHRLGRGTSGILLCAKTKLAKT 117
VHRL + T+G+++ AKT A+T
Sbjct: 135 -VHRLDKDTTGLMVVAKTVPAQT 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,384,096
Number of Sequences: 539616
Number of extensions: 1789281
Number of successful extensions: 4299
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 4095
Number of HSP's gapped (non-prelim): 136
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)