Query 041166
Match_columns 133
No_of_seqs 179 out of 1080
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 99.9 5.3E-27 1.8E-31 185.4 9.6 124 2-130 18-168 (325)
2 2i82_A Ribosomal large subunit 99.9 2.7E-24 9.2E-29 161.3 9.9 81 39-130 11-92 (217)
3 1v9k_A Ribosomal large subunit 99.9 2.1E-23 7.1E-28 157.6 8.9 81 41-130 3-83 (228)
4 2oml_A Ribosomal large subunit 99.9 5.6E-23 1.9E-27 151.2 3.1 77 39-130 3-79 (189)
5 1ksk_A Ribosomal small subunit 99.9 3.1E-23 1.1E-27 156.9 1.3 77 41-130 56-133 (234)
6 2olw_A Ribosomal large subunit 99.9 9.3E-23 3.2E-27 153.2 3.4 78 38-130 30-107 (217)
7 1vio_A Ribosomal small subunit 99.8 9E-23 3.1E-27 155.3 1.3 78 40-130 54-132 (243)
8 3dh3_A Ribosomal large subunit 99.8 4.7E-20 1.6E-24 143.9 4.1 66 44-122 64-129 (290)
9 2gml_A Ribosomal large subunit 99.6 7.7E-16 2.6E-20 117.0 5.8 64 46-122 13-76 (237)
10 1r3e_A TRNA pseudouridine synt 97.1 0.00039 1.3E-08 54.4 4.3 51 47-114 3-53 (309)
11 1k8w_A TRNA pseudouridine synt 97.1 0.00049 1.7E-08 54.2 4.3 59 47-124 25-83 (327)
12 1sgv_A TRNA pseudouridine synt 97.1 0.00049 1.7E-08 54.0 4.3 52 46-114 5-56 (316)
13 2aus_C Pseudouridine synthase; 97.0 0.0006 2.1E-08 53.8 4.3 53 44-113 43-95 (334)
14 2apo_A Probable tRNA pseudouri 96.9 0.00085 2.9E-08 53.4 4.3 53 44-113 63-115 (357)
15 3u28_A H/ACA ribonucleoprotein 96.8 0.0012 4.1E-08 53.3 4.6 53 44-113 56-108 (400)
16 2k6p_A Uncharacterized protein 88.8 0.14 4.7E-06 32.3 1.2 16 2-17 2-17 (92)
17 2ckc_A Chromodomain-helicase-D 37.8 32 0.0011 21.2 3.1 33 45-77 23-55 (80)
18 1dm9_A Hypothetical 15.5 KD pr 34.9 6.3 0.00022 26.5 -0.6 16 2-17 10-25 (133)
19 3fd5_A Selenide, water dikinas 33.8 42 0.0014 26.4 4.0 28 99-126 318-345 (394)
20 2zod_A Selenide, water dikinas 33.1 12 0.00041 28.7 0.7 29 100-128 300-328 (345)
21 1b4b_A Arginine repressor; cor 33.0 40 0.0014 19.9 3.0 22 104-125 48-69 (71)
22 4egu_A Histidine triad (HIT) p 30.3 29 0.001 22.1 2.2 14 40-53 18-31 (119)
23 3oj7_A Putative histidine tria 29.7 31 0.001 21.9 2.2 14 40-53 21-34 (117)
24 3u7r_A NADPH-dependent FMN red 27.3 75 0.0026 22.2 4.1 30 52-81 103-132 (190)
25 2p5m_A Arginine repressor; alp 26.8 54 0.0018 19.9 2.9 22 104-125 60-81 (83)
26 3o1c_A Histidine triad nucleot 26.7 37 0.0013 22.0 2.2 14 40-53 29-42 (126)
27 3eau_A Voltage-gated potassium 26.3 87 0.003 23.4 4.5 71 47-129 77-149 (327)
28 3n1s_A HIT-like protein HINT; 25.7 48 0.0016 21.2 2.6 14 40-53 17-30 (119)
29 2dl6_A Chromodomain-helicase-D 25.0 41 0.0014 20.9 2.0 32 45-76 16-47 (83)
30 3n6q_A YGHZ aldo-keto reductas 23.4 1.3E+02 0.0045 22.6 5.1 72 46-129 89-163 (346)
31 1xqu_A HIT family hydrolase; p 22.1 49 0.0017 22.2 2.2 23 39-61 48-71 (147)
32 3p0t_A Uncharacterized protein 21.1 65 0.0022 21.0 2.6 25 40-64 19-48 (138)
33 3lut_A Voltage-gated potassium 20.9 1.2E+02 0.0042 23.1 4.5 72 46-129 110-183 (367)
34 3ksv_A Uncharacterized protein 20.9 65 0.0022 21.6 2.6 14 40-53 25-38 (149)
35 3erp_A Putative oxidoreductase 20.5 1.6E+02 0.0056 22.3 5.1 72 46-129 110-184 (353)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=99.94 E-value=5.3e-27 Score=185.36 Aligned_cols=124 Identities=25% Similarity=0.306 Sum_probs=77.5
Q ss_pred hHHHHHhhhCCCCCCCC------------------------CCCcEEEEecCCCCCC---CCCCCcceEEECCcEEEEEC
Q 041166 2 TLIEFYSTKHKNSAPLQ------------------------GAGSELVYHRLPWKEP---DVPYLLEVFYEDDDLIALNK 54 (133)
Q Consensus 2 ~l~~~~~~~~~~~~~~~------------------------~~g~~v~~~~~~~~~~---~~~~~~~vlyed~~~lvvnK 54 (133)
||++||.+.+...++.. .+||.|.+...+..++ +.+.+++|+|||++++||||
T Consensus 18 RLd~~L~~~~~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilyed~~~lvvnK 97 (325)
T 1v9f_A 18 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINK 97 (325)
T ss_dssp ----------------------------------------------------------CCCCCCCCCEEEECSSEEEEEE
T ss_pred hHHHHHHhhccccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeEEEECCCEEEEEC
Confidence 78999998875444441 2678787765433221 22345789999999999999
Q ss_pred CCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHHHHcCCccc
Q 041166 55 PSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVV 130 (133)
Q Consensus 55 P~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~f~~~~v~~ 130 (133)
|+||+||+.......|+.+.+..++..... ..++++|||||++||||||||||.++++.|+++|++++|.+
T Consensus 98 P~G~~~~~~~~~~~~tl~~~l~~~~~~~~~-----~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K 168 (325)
T 1v9f_A 98 PRDLVVHPGAGNPDGTVLNALLHYYPPIAD-----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITR 168 (325)
T ss_dssp CSSCCSSCBTTBSSSSHHHHHHHHCGGGGG-----SGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEE
T ss_pred CCCCeEecCCCCCCccHHHHHHHHHHhcCC-----CCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeE
Confidence 999999998877677999988766643221 34789999999999999999999999999999999998865
No 2
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=99.91 E-value=2.7e-24 Score=161.34 Aligned_cols=81 Identities=33% Similarity=0.562 Sum_probs=71.0
Q ss_pred CcceEEECCcEEEEECCCCceeecCCC-CCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHH
Q 041166 39 LLEVFYEDDDLIALNKPSGLQVLPGGL-FQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117 (133)
Q Consensus 39 ~~~vlyed~~~lvvnKP~gl~v~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~ 117 (133)
.++|+|||++++|||||+|++||++.. ....|+.+.+...+ .++++|||||++|||+||||||.++++
T Consensus 11 ~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~-----------~~~~~vhRLD~~TSGlll~ak~~~~~~ 79 (217)
T 2i82_A 11 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY-----------PQAESVHRLDMATSGVIVVALTKAAER 79 (217)
T ss_dssp SCCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC-----------TTCEESSCCCTTCEEEEEEESSHHHHH
T ss_pred CceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC-----------CCCceeecCCCCCeEEEEEEeCHHHHH
Confidence 378999999999999999999998754 34578888887553 246799999999999999999999999
Q ss_pred HHHHHHHcCCccc
Q 041166 118 CIAAYFADKTSVV 130 (133)
Q Consensus 118 ~l~~~f~~~~v~~ 130 (133)
.|+++|++++|.+
T Consensus 80 ~l~~~f~~~~v~K 92 (217)
T 2i82_A 80 ELKRQFREREPKK 92 (217)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHhCCeeE
Confidence 9999999999865
No 3
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=99.89 E-value=2.1e-23 Score=157.55 Aligned_cols=81 Identities=36% Similarity=0.449 Sum_probs=69.6
Q ss_pred ceEEECCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHH
Q 041166 41 EVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIA 120 (133)
Q Consensus 41 ~vlyed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~ 120 (133)
+|+|||++++|||||+||+|||+.+ ...++...+...+.. ...+++|||||++|||+||||||.++++.|+
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~~--------~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~ 73 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPE--------ARFLELVHRLDRDTSGVLLVAKKRSALRSLH 73 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHSTT--------CSCCEESSCCCTTCEEEEEEESSHHHHHHHH
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcCC--------CCccceEecCCCCCeEEEEEEeCHHHHHHHH
Confidence 5999999999999999999998765 356788777654321 3468899999999999999999999999999
Q ss_pred HHHHcCCccc
Q 041166 121 AYFADKTSVV 130 (133)
Q Consensus 121 ~~f~~~~v~~ 130 (133)
++|++++|.+
T Consensus 74 ~~~~~~~v~K 83 (228)
T 1v9k_A 74 EQLREKGMQK 83 (228)
T ss_dssp HHHHTTCSEE
T ss_pred HHHHhCCeeE
Confidence 9999998865
No 4
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.86 E-value=5.6e-23 Score=151.17 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=61.7
Q ss_pred CcceEEECCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHH
Q 041166 39 LLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118 (133)
Q Consensus 39 ~~~vlyed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~ 118 (133)
...|||||++++|||||+||+||+.......|+.+.+. ..++++|||||++|||+||||||.++++.
T Consensus 3 ~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-------------~~~~~~vhRLD~~TSGlll~ak~~~~~~~ 69 (189)
T 2oml_A 3 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-------------VQGVYAAGRLDRDSEGLLVLTNNGALQAR 69 (189)
T ss_dssp -----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-------------CSSCEESSCCCTTCEEEEEEESCHHHHHH
T ss_pred ccccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-------------CCCceECCCCCCCCeeEEEEEcCHHHHHH
Confidence 35699999999999999999999988766678766553 12578999999999999999999999999
Q ss_pred HHHHHHcCCccc
Q 041166 119 IAAYFADKTSVV 130 (133)
Q Consensus 119 l~~~f~~~~v~~ 130 (133)
|+++ +++|.+
T Consensus 70 l~~~--~~~v~K 79 (189)
T 2oml_A 70 LTQP--GKRTGK 79 (189)
T ss_dssp HHST--TSCCCE
T ss_pred HhCc--cCCCcE
Confidence 9997 555543
No 5
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.86 E-value=3.1e-23 Score=156.88 Aligned_cols=77 Identities=21% Similarity=0.145 Sum_probs=62.8
Q ss_pred ceEEE-CCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHH
Q 041166 41 EVFYE-DDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCI 119 (133)
Q Consensus 41 ~vlye-d~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l 119 (133)
.|+|| |++++|||||+||+|||.... ..|+.+.+...+ ..++++|||||++|||+||||+|.++++.+
T Consensus 56 ~i~~e~d~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~----------~~~~~~vhRLD~~TsGlll~ak~~~~~~~l 124 (234)
T 1ksk_A 56 PLAQQHGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPV----------AWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 124 (234)
T ss_dssp EECCCCCCCEEEEEECTTCBSSSSCSS-SCBGGGGCCCTT----------GGGCEESSCCCTTCEEEEEEESCHHHHHHH
T ss_pred EeecCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHhhhhh----------cCCeeEcCCCCCCCeeEEEEEcCHHHHHHH
Confidence 58999 999999999999999998764 678877664322 136789999999999999999999988877
Q ss_pred HHHHHcCCccc
Q 041166 120 AAYFADKTSVV 130 (133)
Q Consensus 120 ~~~f~~~~v~~ 130 (133)
.. ++++|.+
T Consensus 125 ~~--~~~~v~K 133 (234)
T 1ksk_A 125 TS--PRHHCEK 133 (234)
T ss_dssp HC--TTSCCCE
T ss_pred hC--CCCCCCe
Confidence 65 4566543
No 6
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.86 E-value=9.3e-23 Score=153.21 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=60.4
Q ss_pred CCcceEEECCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHH
Q 041166 38 YLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKT 117 (133)
Q Consensus 38 ~~~~vlyed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~ 117 (133)
..+.|||||++++|||||+|++||+.......|+.+.|. ..++++|||||++||||||||+|.++++
T Consensus 30 ~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-------------~~~~~~VhRLDr~TSGllllAk~~~~~~ 96 (217)
T 2olw_A 30 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-------------VQGVYAAGRLDRDSEGLLVLTNNGALQA 96 (217)
T ss_dssp -------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-------------CCSCEESSCCCTTCEEEEEEESCHHHHH
T ss_pred ccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-------------cCCceECCCCCCCCeeEEEEEcCHHHHH
Confidence 457899999999999999999999987766678766553 1267899999999999999999999999
Q ss_pred HHHHHHHcCCccc
Q 041166 118 CIAAYFADKTSVV 130 (133)
Q Consensus 118 ~l~~~f~~~~v~~ 130 (133)
.|+++ .++|.+
T Consensus 97 ~L~~~--~~~v~K 107 (217)
T 2olw_A 97 RLTQP--GKRTGK 107 (217)
T ss_dssp HHHCT--TCCCCE
T ss_pred HHHcc--cccCCE
Confidence 99987 455543
No 7
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.85 E-value=9e-23 Score=155.27 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=61.5
Q ss_pred cceEEECCc-EEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHH
Q 041166 40 LEVFYEDDD-LIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTC 118 (133)
Q Consensus 40 ~~vlyed~~-~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~ 118 (133)
.+|+|||++ ++|||||+||+||+.... ..|+.+.|...+ ..++++|||||++|||+||||+|.+++..
T Consensus 54 ~~i~~ed~~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~----------~~~~~~vhRLD~~TsGlll~ak~~~~a~~ 122 (243)
T 1vio_A 54 ELLTWIEEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYPL----------AGKLHSAGRLDVDTTGLVLLTDDGQWSHR 122 (243)
T ss_dssp EECCSSCCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTG----------GGGCEESSCCCTTCEEEEEEESCHHHHHH
T ss_pred cccccCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHHhHHh----------cCCEeEccCCCCCCeEEEEEEECHHHHHH
Confidence 358999999 999999999999988764 568877665332 13678999999999999999999998777
Q ss_pred HHHHHHcCCccc
Q 041166 119 IAAYFADKTSVV 130 (133)
Q Consensus 119 l~~~f~~~~v~~ 130 (133)
+.. ++++|.+
T Consensus 123 l~~--~~~~v~K 132 (243)
T 1vio_A 123 ITS--PKHHCEK 132 (243)
T ss_dssp HHC--TTSCCCE
T ss_pred HhC--CCCCCCE
Confidence 654 4566543
No 8
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.78 E-value=4.7e-20 Score=143.95 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=57.1
Q ss_pred EECCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHH
Q 041166 44 YEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122 (133)
Q Consensus 44 yed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~ 122 (133)
|||++|+|+|||+|++||+.... ..|+.+.+.. ..++++|||||++||||||||+|.++++.|...
T Consensus 64 ~ed~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~------------~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~ 129 (290)
T 3dh3_A 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH------------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA 129 (290)
T ss_dssp GGGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTC------------SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCG
T ss_pred cccceEEEEECCCccccCCCCCC-CCcHHHHhhc------------cCceeeeccCCCCCcceEEEcCCHHHHHHHHHh
Confidence 79999999999999999987754 5688776642 357889999999999999999999999998874
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.60 E-value=7.7e-16 Score=117.04 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=53.4
Q ss_pred CCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHH
Q 041166 46 DDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122 (133)
Q Consensus 46 d~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~ 122 (133)
++.|+|+|||+|++|++... ...|+.+.+.. ..++++|||||++||||||||+|.++++.|...
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~------------~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p 76 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH------------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA 76 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC------------SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc------------cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCc
Confidence 45799999999999998665 45688765531 246889999999999999999999999999874
No 10
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=97.13 E-value=0.00039 Score=54.41 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=42.8
Q ss_pred CcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChH
Q 041166 47 DDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKL 114 (133)
Q Consensus 47 ~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~ 114 (133)
+.+++||||+||.+| .++..+++.+. ..+++-.+.||-..||+|+++-...
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~---------~kKvGH~GTLDP~AtGvL~i~iG~a 53 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK---------TRKVGHGGTLDPFACGVLIIGVNQG 53 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGG
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc---------cceecccccCCCCcceeEEEEECHH
Confidence 469999999999776 67888887774 4577789999999999999998663
No 11
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.07 E-value=0.00049 Score=54.23 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=46.0
Q ss_pred CcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHHHH
Q 041166 47 DDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124 (133)
Q Consensus 47 ~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~f~ 124 (133)
+.+++||||+||.+| .++..+++.+. ..+++-.+.||-..||+|+++-...+ ++.+.+.
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~---------~kKvGH~GTLDP~AtGvL~i~~G~aT--Kl~~~l~ 83 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN---------ANRAGHTGALDPLATGMLPICLGEAT--KFSQYLL 83 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHH
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc---------cceeccCCCCCCCCeeEEEEEECHHH--hHHHHhc
Confidence 579999999999775 67788887764 45777899999999999999987642 2444443
No 12
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=97.06 E-value=0.00049 Score=53.98 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=43.7
Q ss_pred CCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChH
Q 041166 46 DDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKL 114 (133)
Q Consensus 46 d~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~ 114 (133)
.+.+++||||+||.+| .++..+++.+. ..+++-.+.||-..||+|+++-...
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~---------~kKvGH~GTLDP~AtGvL~i~iG~a 56 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA---------TRRVGHAGTLDPMATGVLVIGIERA 56 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGGG
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc---------cccccccccCCCCCeEEEEEEECHH
Confidence 4579999999999776 67888888775 4577889999999999999998663
No 13
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.99 E-value=0.0006 Score=53.83 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=44.1
Q ss_pred EECCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecCh
Q 041166 44 YEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTK 113 (133)
Q Consensus 44 yed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~ 113 (133)
|-.+.+++||||+|+.+| .++..+++.+. ..+++-.+.||-..||+|+++-..
T Consensus 43 ~~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~---------~~KvGH~GTLDP~atGvL~v~~g~ 95 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILN---------LEKAGHGGTLDPKVSGVLPVALER 95 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGG
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC---------cceeccccccCCccceeEEEEeCh
Confidence 445789999999999776 67788887774 457778999999999999999864
No 14
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.88 E-value=0.00085 Score=53.44 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=44.2
Q ss_pred EECCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecCh
Q 041166 44 YEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTK 113 (133)
Q Consensus 44 yed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~ 113 (133)
|-.+.+++||||+|+.+| .++..+++.+. ..+++-...||-..||+|+++-..
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~---------~~KvGH~GTLDP~AtGvL~v~~G~ 115 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILN---------LDKAGHGGTLDPKVTGVLPVALER 115 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT---------CSCEEESSCCCTTCEEEEEEEEGG
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC---------ccccccccccCCCceeEEEEEeCH
Confidence 456789999999999776 67788887774 457788999999999999999864
No 15
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.80 E-value=0.0012 Score=53.30 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=44.9
Q ss_pred EECCcEEEEECCCCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecCh
Q 041166 44 YEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTK 113 (133)
Q Consensus 44 yed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~ 113 (133)
|-.+.+++||||+|+.+| .++..+++.+. ..+++-...||-..||+|+++-..
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~---------~kKvGH~GTLDP~AtGvL~v~iG~ 108 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILR---------CEKTGHSGTLDPKVTGCLIVCIDR 108 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHT---------CSCEEESSCCCTTCEEEEEEEEGG
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC---------cCcccccCCCCCCCeEEEEEEECh
Confidence 555789999999999776 67888888875 467788999999999999999865
No 16
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=88.84 E-value=0.14 Score=32.31 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=10.9
Q ss_pred hHHHHHhhhCCCCCCC
Q 041166 2 TLIEFYSTKHKNSAPL 17 (133)
Q Consensus 2 ~l~~~~~~~~~~~~~~ 17 (133)
||++||......+++.
T Consensus 2 RLD~~L~~~~~~~sR~ 17 (92)
T 2k6p_A 2 RIDKFLQSVGLVKRRV 17 (92)
T ss_dssp BHHHHSTTTTSCCCCC
T ss_pred hHHHHHHHCCCCCCHH
Confidence 7999998865433444
No 17
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=37.76 E-value=32 Score=21.18 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=23.6
Q ss_pred ECCcEEEEECCCCceeecCCCCCcchHHHHHHH
Q 041166 45 EDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQW 77 (133)
Q Consensus 45 ed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~~ 77 (133)
-|..+=|+|+|-|....+..-....+|.++|+.
T Consensus 23 ~e~pVPViN~~dGtrL~Ge~AP~~KdL~dWLrq 55 (80)
T 2ckc_A 23 PDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKL 55 (80)
T ss_dssp TTCBCCEEETTTTEEECTTSSCBHHHHHHHHHH
T ss_pred CCCccceeecCCCcccccccCccccCHHHHHHH
Confidence 345567899999998877655555677777764
No 18
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=34.92 E-value=6.3 Score=26.50 Aligned_cols=16 Identities=6% Similarity=-0.076 Sum_probs=10.5
Q ss_pred hHHHHHhhhCCCCCCC
Q 041166 2 TLIEFYSTKHKNSAPL 17 (133)
Q Consensus 2 ~l~~~~~~~~~~~~~~ 17 (133)
||++||.......++.
T Consensus 10 RLDk~L~~~~~~~SRs 25 (133)
T 1dm9_A 10 RLDKWLWAARFYKTRA 25 (133)
T ss_dssp BHHHHHHHTTSSSSHH
T ss_pred hHHHHHHHCCCCCCHH
Confidence 7999998864333443
No 19
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=33.77 E-value=42 Score=26.37 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=25.2
Q ss_pred CCCCCceeeeeecChHHHHHHHHHHHcC
Q 041166 99 LGRGTSGILLCAKTKLAKTCIAAYFADK 126 (133)
Q Consensus 99 LDr~TSGlll~Ak~~~~~~~l~~~f~~~ 126 (133)
.|.+|||-||++-.++.+..+.+.+++.
T Consensus 318 ~d~etsGgLL~~v~~~~~~~~~~~l~~~ 345 (394)
T 3fd5_A 318 TCPETSGGLLICLPREQAARFCAEIKSP 345 (394)
T ss_dssp CCCCSSCCEEEEECHHHHHHHHHHHHCC
T ss_pred cCcccCCcEEEEECHHHHHHHHHHHHhc
Confidence 5788999999999999999999999865
No 20
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=33.07 E-value=12 Score=28.68 Aligned_cols=29 Identities=24% Similarity=0.031 Sum_probs=23.7
Q ss_pred CCCCceeeeeecChHHHHHHHHHHHcCCc
Q 041166 100 GRGTSGILLCAKTKLAKTCIAAYFADKTS 128 (133)
Q Consensus 100 Dr~TSGlll~Ak~~~~~~~l~~~f~~~~v 128 (133)
|=+|||-|||+-.++.+..+.+.+++..+
T Consensus 300 DpqTSGGLL~tv~~~~~~~~~~~l~~~g~ 328 (345)
T 2zod_A 300 DPVTSGGLLFTINKEKLEKIDETAKELEV 328 (345)
T ss_dssp CCCSSCCEEEEECGGGGGTHHHHHHHHTC
T ss_pred CccccCcEEEEEcHHHHHHHHHHHHHcCC
Confidence 56799999999999888888888876443
No 21
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=33.04 E-value=40 Score=19.86 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=19.1
Q ss_pred ceeeeeecChHHHHHHHHHHHc
Q 041166 104 SGILLCAKTKLAKTCIAAYFAD 125 (133)
Q Consensus 104 SGlll~Ak~~~~~~~l~~~f~~ 125 (133)
--++|++++.+.+..+.+.|++
T Consensus 48 DTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 48 DTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp SEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 3489999999999999998864
No 22
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=30.30 E-value=29 Score=22.06 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=11.3
Q ss_pred cceEEECCcEEEEE
Q 041166 40 LEVFYEDDDLIALN 53 (133)
Q Consensus 40 ~~vlyed~~~lvvn 53 (133)
-.|||||+.++|+-
T Consensus 18 ~~iv~e~e~~~af~ 31 (119)
T 4egu_A 18 STKVYEDDRVLAFN 31 (119)
T ss_dssp CCEEEECSSEEEEE
T ss_pred CCEEEECCCEEEEE
Confidence 47999999987654
No 23
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=29.71 E-value=31 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.797 Sum_probs=11.2
Q ss_pred cceEEECCcEEEEE
Q 041166 40 LEVFYEDDDLIALN 53 (133)
Q Consensus 40 ~~vlyed~~~lvvn 53 (133)
-+|||||+.++|+-
T Consensus 21 ~~iv~e~~~~~af~ 34 (117)
T 3oj7_A 21 STIVYEDDEIFAFK 34 (117)
T ss_dssp CCEEEECSSEEEEE
T ss_pred CCEEEECCcEEEEE
Confidence 47999999987654
No 24
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=27.26 E-value=75 Score=22.20 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=19.0
Q ss_pred EECCCCceeecCCCCCcchHHHHHHHHHhh
Q 041166 52 LNKPSGLQVLPGGLFQQRTVLKQLQWRASK 81 (133)
Q Consensus 52 vnKP~gl~v~~~~~~~~~tl~~~l~~~~~~ 81 (133)
.+||.++.+...+..........|+..+..
T Consensus 103 ~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~ 132 (190)
T 3u7r_A 103 KGKPAAVIGTSPGVIGAALAQARLKNDLLH 132 (190)
T ss_dssp TTCEEEEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCEEEEEEeCCchhhHHHHHHHHHHHHHH
Confidence 469999988765554444455666655544
No 25
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=26.78 E-value=54 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.0
Q ss_pred ceeeeeecChHHHHHHHHHHHc
Q 041166 104 SGILLCAKTKLAKTCIAAYFAD 125 (133)
Q Consensus 104 SGlll~Ak~~~~~~~l~~~f~~ 125 (133)
--++|++++.+.+..+.+.|.+
T Consensus 60 DTIlvi~r~~~~a~~l~~~l~~ 81 (83)
T 2p5m_A 60 DTILIICRTPEDTEGVKNRLLE 81 (83)
T ss_dssp SEEEEECSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 3489999999999999998864
No 26
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=26.70 E-value=37 Score=21.97 Aligned_cols=14 Identities=29% Similarity=0.722 Sum_probs=11.5
Q ss_pred cceEEECCcEEEEE
Q 041166 40 LEVFYEDDDLIALN 53 (133)
Q Consensus 40 ~~vlyed~~~lvvn 53 (133)
-.|||||+.++++-
T Consensus 29 ~~iv~e~e~~~af~ 42 (126)
T 3o1c_A 29 AKIIFEDDQALAFH 42 (126)
T ss_dssp CCEEEECSSEEEEE
T ss_pred CCEEEECCCEEEEE
Confidence 47999999987765
No 27
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=26.32 E-value=87 Score=23.37 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=43.0
Q ss_pred CcEEEEECC--CCceeecCCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHHHH
Q 041166 47 DDLIALNKP--SGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFA 124 (133)
Q Consensus 47 ~~~lvvnKP--~gl~v~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~f~ 124 (133)
++++|.-|= .+... .........+...+...+...+.. ...++.+|+-|.++. -.++...|.++.+
T Consensus 77 ~~v~I~TK~~~~~~~~-~~~~~s~~~i~~~~e~SL~rLg~d----yiDl~~lH~p~~~~~-------~~e~~~al~~l~~ 144 (327)
T 3eau_A 77 SSLVITTKIFWGGKAE-TERGLSRKHIIEGLKASLERLQLE----YVDVVFANRPDPNTP-------MEETVRAMTHVIN 144 (327)
T ss_dssp GGCEEEEEESBCCSSG-GGBSSSHHHHHHHHHHHHHHHTCS----CEEEEEESSCCTTSC-------HHHHHHHHHHHHH
T ss_pred CeEEEEEeecCCCCCC-CCCCCCHHHHHHHHHHHHHHhCCC----ccceEEEeCCCCCCC-------HHHHHHHHHHHHH
Confidence 467777771 22110 111122345666666555554421 457788999998762 3478899999999
Q ss_pred cCCcc
Q 041166 125 DKTSV 129 (133)
Q Consensus 125 ~~~v~ 129 (133)
+|+|.
T Consensus 145 ~Gkir 149 (327)
T 3eau_A 145 QGMAM 149 (327)
T ss_dssp TTSEE
T ss_pred cCCee
Confidence 99875
No 28
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=25.66 E-value=48 Score=21.20 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.5
Q ss_pred cceEEECCcEEEEE
Q 041166 40 LEVFYEDDDLIALN 53 (133)
Q Consensus 40 ~~vlyed~~~lvvn 53 (133)
-.+||||+.++++-
T Consensus 17 ~~iv~ede~~~af~ 30 (119)
T 3n1s_A 17 SDIVYQDDLVTAFR 30 (119)
T ss_dssp CCEEEECSSEEEEE
T ss_pred CCEEEECCCEEEEE
Confidence 46999999987764
No 29
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=24.98 E-value=41 Score=20.92 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=23.3
Q ss_pred ECCcEEEEECCCCceeecCCCCCcchHHHHHH
Q 041166 45 EDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQ 76 (133)
Q Consensus 45 ed~~~lvvnKP~gl~v~~~~~~~~~tl~~~l~ 76 (133)
-|..+-||||+.|-..++..-....+|..+|.
T Consensus 16 ~EerVpVi~~~tG~~l~G~~AP~~k~L~~WLk 47 (83)
T 2dl6_A 16 LETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 47 (83)
T ss_dssp TTSBCCEECSSSCCEECGGGSCBSTTHHHHHH
T ss_pred CCcceeeEeCCCCccccCCCchhHhHHHHHHh
Confidence 56678899999999888655444456777664
No 30
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=23.37 E-value=1.3e+02 Score=22.62 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=43.6
Q ss_pred CCcEEEEECCCCceeecCC---CCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHH
Q 041166 46 DDDLIALNKPSGLQVLPGG---LFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122 (133)
Q Consensus 46 d~~~lvvnKP~gl~v~~~~---~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~ 122 (133)
-++++|.-|= |....+.. ......+...+...+...+.. ...++.+|+-|.++. -.++...|.++
T Consensus 89 R~~~~I~TK~-g~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d----yiDl~~lH~p~~~~~-------~~e~~~al~~l 156 (346)
T 3n6q_A 89 RDELIISTKA-GYDMWPGPYGSGGSRKYLLASLDQSLKRMGLE----YVDIFYSHRVDENTP-------MEETASALAHA 156 (346)
T ss_dssp GGGCEEEEEE-CSCCSSSTTSSSSCHHHHHHHHHHHHHHHTCS----CEEEEEECSCCTTSC-------HHHHHHHHHHH
T ss_pred cccEEEEEEe-cccCCCCCCCCCCCHHHHHHHHHHHHHHhCCC----cEeEEEEeCCCCCCC-------HHHHHHHHHHH
Confidence 3567788881 11111111 112345666666555554321 457889999998763 25788899999
Q ss_pred HHcCCcc
Q 041166 123 FADKTSV 129 (133)
Q Consensus 123 f~~~~v~ 129 (133)
.++|+|.
T Consensus 157 ~~~Gkir 163 (346)
T 3n6q_A 157 VQSGKAL 163 (346)
T ss_dssp HHTTSEE
T ss_pred HHcCCee
Confidence 9998875
No 31
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=22.12 E-value=49 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=15.1
Q ss_pred CcceEEECCcEEEEE-CCCCceee
Q 041166 39 LLEVFYEDDDLIALN-KPSGLQVL 61 (133)
Q Consensus 39 ~~~vlyed~~~lvvn-KP~gl~v~ 61 (133)
+-.|||||+.++|+- +-+-.+.|
T Consensus 48 ~~~iV~e~e~~~af~d~~P~~pgH 71 (147)
T 1xqu_A 48 PSTIYYEDERVIAIKDINPAAPVH 71 (147)
T ss_dssp CBCEEEECSSEEEEECSSCSSSEE
T ss_pred CcEEEEECCcEEEEEecCCCCccE
Confidence 347999999977654 54444433
No 32
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=21.05 E-value=65 Score=20.97 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=16.4
Q ss_pred cceEEECCcEEEEE-C----CCCceeecCC
Q 041166 40 LEVFYEDDDLIALN-K----PSGLQVLPGG 64 (133)
Q Consensus 40 ~~vlyed~~~lvvn-K----P~gl~v~~~~ 64 (133)
-++||||+.++++- . |.-+.+-|..
T Consensus 19 ~~iV~e~~~~~af~d~~P~~pgH~LViPk~ 48 (138)
T 3p0t_A 19 GRFVYEDDDVVAFLTIEPMTQGHTLVVPRE 48 (138)
T ss_dssp CCEEEECSSEEEEECSSCSSTTCEEEEESS
T ss_pred cCEEEeCCCEEEEecCCCCCCcEEEEEEhH
Confidence 36999999988764 2 3335555643
No 33
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=20.93 E-value=1.2e+02 Score=23.06 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=43.3
Q ss_pred CCcEEEEECCCCceeec--CCCCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHHH
Q 041166 46 DDDLIALNKPSGLQVLP--GGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYF 123 (133)
Q Consensus 46 d~~~lvvnKP~gl~v~~--~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~f 123 (133)
-++++|.-|= +..... ........+...+...+...+.. ...++.+|+-|..+. -.++...|.++.
T Consensus 110 R~~v~I~TK~-~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d----yiDl~~lH~pd~~~~-------~~e~~~al~~l~ 177 (367)
T 3lut_A 110 RSSLVITTKI-FWGGKAETERGLSRKHIIEGLKASLERLQLE----YVDVVFANRPDPNTP-------MEETVRAMTHVI 177 (367)
T ss_dssp GGGCEEEEEE-SBCCSSGGGBSSCHHHHHHHHHHHHHHHTCS----CEEEEEESSCCTTSC-------HHHHHHHHHHHH
T ss_pred CceEEEEecc-ccCCCCccCCCCCHHHHHHHHHHHHHHhCCC----ccceEEecCCCCCCC-------HHHHHHHHHHHH
Confidence 3567788881 111110 11122345666666555554421 457889999997752 357888999999
Q ss_pred HcCCcc
Q 041166 124 ADKTSV 129 (133)
Q Consensus 124 ~~~~v~ 129 (133)
++|+|.
T Consensus 178 ~~Gkir 183 (367)
T 3lut_A 178 NQGMAM 183 (367)
T ss_dssp HTTSEE
T ss_pred HcCCee
Confidence 998875
No 34
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=20.86 E-value=65 Score=21.56 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=11.6
Q ss_pred cceEEECCcEEEEE
Q 041166 40 LEVFYEDDDLIALN 53 (133)
Q Consensus 40 ~~vlyed~~~lvvn 53 (133)
-.+||||+.++++-
T Consensus 25 ~~iV~ed~~~~af~ 38 (149)
T 3ksv_A 25 CAKVAETSKALAFM 38 (149)
T ss_dssp CCEEEECSSEEEEE
T ss_pred ccEEEECCCEEEEE
Confidence 47999999988765
No 35
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=20.48 E-value=1.6e+02 Score=22.27 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=43.9
Q ss_pred CCcEEEEECCCCceeecCC---CCCcchHHHHHHHHHhhccCCCCCCCCcccccccCCCCCceeeeeecChHHHHHHHHH
Q 041166 46 DDDLIALNKPSGLQVLPGG---LFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAY 122 (133)
Q Consensus 46 d~~~lvvnKP~gl~v~~~~---~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~vhRLDr~TSGlll~Ak~~~~~~~l~~~ 122 (133)
-++++|.-|= |....+.. ......+...+...+...+.. ...++.+|+-|.++. -.++...|.++
T Consensus 110 R~~v~I~TK~-g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d----yiDl~~lH~p~~~~~-------~~e~~~aL~~l 177 (353)
T 3erp_A 110 RDELIISTKA-GYTMWDGPYGDWGSRKYLIASLDQSLKRMGLE----YVDIFYHHRPDPETP-------LKETMKALDHL 177 (353)
T ss_dssp GGGCEEEEEE-SSCCSSSTTSSTTCHHHHHHHHHHHHHHHTCS----CEEEEEECSCCTTSC-------HHHHHHHHHHH
T ss_pred CCeEEEEeee-ccCCCCCcccCCCCHHHHHHHHHHHHHHhCCC----eEeEEEecCCCCCCC-------HHHHHHHHHHH
Confidence 3567788882 11111111 112345666666555554321 457889999998763 25788899999
Q ss_pred HHcCCcc
Q 041166 123 FADKTSV 129 (133)
Q Consensus 123 f~~~~v~ 129 (133)
.++|+|.
T Consensus 178 ~~~Gkir 184 (353)
T 3erp_A 178 VRHGKAL 184 (353)
T ss_dssp HHTTSEE
T ss_pred HHCCCcc
Confidence 9999875
Done!