Query 041168
Match_columns 177
No_of_seqs 280 out of 2367
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 5.1E-21 1.1E-25 170.7 12.7 153 1-175 31-208 (968)
2 PLN03150 hypothetical protein; 99.7 6E-17 1.3E-21 138.6 13.5 151 2-172 375-532 (623)
3 PLN00113 leucine-rich repeat r 99.5 1.8E-14 3.9E-19 128.9 8.2 114 54-175 141-256 (968)
4 KOG0617 Ras suppressor protein 99.4 1.8E-15 3.8E-20 108.3 -4.3 117 53-176 33-170 (264)
5 KOG0617 Ras suppressor protein 99.3 8.5E-14 1.8E-18 99.8 -1.5 114 53-177 79-194 (264)
6 PLN03150 hypothetical protein; 99.3 3.1E-12 6.7E-17 109.8 7.3 91 80-176 419-511 (623)
7 KOG0472 Leucine-rich repeat pr 99.2 1.6E-11 3.4E-16 98.1 2.8 108 53-173 435-544 (565)
8 KOG0472 Leucine-rich repeat pr 99.1 1.2E-11 2.6E-16 98.7 -1.1 110 54-177 184-296 (565)
9 KOG4194 Membrane glycoprotein 99.1 1.3E-11 2.9E-16 102.4 -1.8 80 54-136 270-351 (873)
10 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.4E-15 83.4 4.2 105 53-169 19-127 (175)
11 KOG0618 Serine/threonine phosp 98.9 1.3E-10 2.9E-15 100.5 0.0 103 53-166 383-487 (1081)
12 KOG0444 Cytoskeletal regulator 98.9 3.8E-11 8.2E-16 100.8 -3.2 110 54-175 246-358 (1255)
13 KOG0444 Cytoskeletal regulator 98.9 2.4E-10 5.2E-15 96.0 -1.3 105 53-167 268-374 (1255)
14 KOG4194 Membrane glycoprotein 98.9 1.2E-09 2.7E-14 91.0 2.6 107 53-168 125-234 (873)
15 PF13855 LRR_8: Leucine rich r 98.7 3.7E-09 8.1E-14 63.5 1.6 54 109-167 8-61 (61)
16 KOG0618 Serine/threonine phosp 98.7 8.2E-10 1.8E-14 95.7 -2.1 105 53-169 359-466 (1081)
17 PF14580 LRR_9: Leucine-rich r 98.7 2E-08 4.3E-13 73.1 5.3 101 53-162 42-147 (175)
18 PF08263 LRRNT_2: Leucine rich 98.7 1E-08 2.2E-13 57.3 3.0 38 1-49 5-43 (43)
19 KOG4237 Extracellular matrix p 98.7 2.5E-09 5.4E-14 85.4 0.6 108 53-168 67-177 (498)
20 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.9E-13 61.1 2.4 56 80-136 2-59 (61)
21 PRK15387 E3 ubiquitin-protein 98.6 3.3E-08 7.2E-13 86.4 5.0 43 127-175 423-465 (788)
22 PLN03210 Resistant to P. syrin 98.6 1.3E-07 2.9E-12 86.6 8.8 109 53-172 611-721 (1153)
23 PLN03210 Resistant to P. syrin 98.5 3.5E-07 7.5E-12 83.9 9.2 111 53-175 589-701 (1153)
24 cd00116 LRR_RI Leucine-rich re 98.5 3.3E-08 7.2E-13 77.8 2.2 18 151-168 217-234 (319)
25 cd00116 LRR_RI Leucine-rich re 98.5 2.2E-08 4.8E-13 78.8 1.0 114 53-169 81-207 (319)
26 KOG0532 Leucine-rich repeat (L 98.5 2.7E-08 5.8E-13 82.8 1.3 101 55-168 145-247 (722)
27 PRK15370 E3 ubiquitin-protein 98.5 3.6E-07 7.9E-12 80.0 7.4 99 54-173 200-300 (754)
28 KOG1259 Nischarin, modulator o 98.5 2E-08 4.4E-13 78.1 -0.8 105 53-169 307-413 (490)
29 KOG1259 Nischarin, modulator o 98.4 4E-08 8.6E-13 76.5 0.2 105 50-168 281-387 (490)
30 PRK15370 E3 ubiquitin-protein 98.4 3.7E-07 7.9E-12 80.0 5.5 102 54-174 263-385 (754)
31 PRK15387 E3 ubiquitin-protein 98.4 8.2E-07 1.8E-11 77.8 6.4 33 54-92 223-255 (788)
32 KOG4237 Extracellular matrix p 98.3 2.2E-07 4.8E-12 74.5 0.9 89 74-168 269-359 (498)
33 KOG0532 Leucine-rich repeat (L 98.3 6.8E-08 1.5E-12 80.4 -2.0 109 53-176 121-231 (722)
34 PF12799 LRR_4: Leucine Rich r 98.3 1.2E-06 2.6E-11 49.0 3.6 38 126-169 1-38 (44)
35 KOG4658 Apoptotic ATPase [Sign 98.2 1.1E-06 2.5E-11 78.1 3.5 106 52-166 544-653 (889)
36 COG4886 Leucine-rich repeat (L 98.2 1.2E-06 2.7E-11 71.3 3.2 100 54-165 117-219 (394)
37 COG4886 Leucine-rich repeat (L 98.1 1.4E-06 3E-11 71.0 1.3 109 54-168 141-268 (394)
38 KOG4579 Leucine-rich repeat (L 97.9 9.4E-07 2E-11 61.5 -1.5 81 79-168 53-136 (177)
39 KOG4579 Leucine-rich repeat (L 97.9 2E-06 4.3E-11 59.9 0.0 110 52-173 52-164 (177)
40 KOG1859 Leucine-rich repeat pr 97.9 4.4E-07 9.5E-12 77.8 -4.4 102 54-167 188-291 (1096)
41 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4E-10 44.2 2.6 36 54-92 2-37 (44)
42 KOG1859 Leucine-rich repeat pr 97.8 5.2E-07 1.1E-11 77.4 -5.7 102 53-169 164-268 (1096)
43 KOG4658 Apoptotic ATPase [Sign 97.7 2.8E-05 6.1E-10 69.4 3.7 105 52-163 570-676 (889)
44 KOG0531 Protein phosphatase 1, 97.7 2E-05 4.3E-10 64.9 1.7 102 53-168 95-199 (414)
45 KOG3207 Beta-tubulin folding c 97.5 1.8E-05 4E-10 64.3 -0.5 40 53-92 146-185 (505)
46 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.9E-09 53.9 3.6 102 54-164 43-149 (233)
47 KOG3207 Beta-tubulin folding c 97.5 4.9E-05 1.1E-09 61.9 1.4 108 53-168 222-339 (505)
48 KOG2739 Leucine-rich acidic nu 97.4 0.00015 3.2E-09 55.4 3.3 59 75-136 61-126 (260)
49 KOG0531 Protein phosphatase 1, 97.4 3.8E-05 8.1E-10 63.3 -0.1 102 54-169 73-176 (414)
50 KOG1644 U2-associated snRNP A' 97.3 0.00042 9E-09 51.3 4.5 84 79-169 42-127 (233)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.00023 4.9E-09 62.3 3.0 112 52-171 147-266 (699)
52 KOG1909 Ran GTPase-activating 97.2 9.8E-05 2.1E-09 58.6 0.2 40 53-92 92-133 (382)
53 PRK15386 type III secretion pr 96.8 0.0043 9.3E-08 51.0 6.7 14 53-66 52-65 (426)
54 PF00560 LRR_1: Leucine Rich R 96.8 0.00033 7.1E-09 33.0 0.2 20 156-176 1-20 (22)
55 KOG1909 Ran GTPase-activating 96.7 0.00026 5.6E-09 56.2 -1.1 112 53-167 185-310 (382)
56 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.4E-08 49.9 2.0 88 75-169 39-130 (260)
57 KOG3665 ZYG-1-like serine/thre 96.3 0.0017 3.6E-08 56.9 1.3 108 53-168 122-233 (699)
58 KOG2982 Uncharacterized conser 95.9 0.002 4.3E-08 50.6 -0.2 81 53-136 71-156 (418)
59 KOG2123 Uncharacterized conser 95.8 0.0015 3.2E-08 50.9 -1.2 60 53-116 41-102 (388)
60 KOG2982 Uncharacterized conser 95.6 0.0024 5.3E-08 50.2 -0.5 88 77-168 69-159 (418)
61 PF13504 LRR_7: Leucine rich r 95.4 0.0093 2E-07 26.1 1.2 13 156-168 2-14 (17)
62 PF00560 LRR_1: Leucine Rich R 95.4 0.0044 9.5E-08 29.0 0.0 19 81-101 2-20 (22)
63 KOG2123 Uncharacterized conser 95.2 0.0011 2.4E-08 51.6 -3.7 96 53-161 19-123 (388)
64 smart00369 LRR_TYP Leucine-ric 94.9 0.023 5.1E-07 27.5 1.9 19 155-174 2-20 (26)
65 smart00370 LRR Leucine-rich re 94.9 0.023 5.1E-07 27.5 1.9 19 155-174 2-20 (26)
66 KOG2120 SCF ubiquitin ligase, 94.7 0.0051 1.1E-07 48.5 -1.4 40 123-166 310-349 (419)
67 COG5238 RNA1 Ran GTPase-activa 94.3 0.061 1.3E-06 42.1 3.7 38 53-92 92-133 (388)
68 COG5238 RNA1 Ran GTPase-activa 93.9 0.027 5.9E-07 43.9 1.3 82 53-136 30-130 (388)
69 PRK15386 type III secretion pr 93.9 0.12 2.6E-06 42.7 5.0 55 75-136 48-104 (426)
70 KOG0473 Leucine-rich repeat pr 93.9 0.0031 6.7E-08 48.0 -3.9 80 52-137 41-122 (326)
71 PF13516 LRR_6: Leucine Rich r 93.1 0.0054 1.2E-07 29.2 -2.5 15 155-169 2-16 (24)
72 PF13306 LRR_5: Leucine rich r 93.1 0.29 6.2E-06 32.9 5.2 99 53-164 12-112 (129)
73 KOG2120 SCF ubiquitin ligase, 92.4 0.0064 1.4E-07 47.9 -4.2 87 80-169 186-274 (419)
74 KOG3864 Uncharacterized conser 91.6 0.096 2.1E-06 39.0 1.4 35 54-90 102-136 (221)
75 KOG0473 Leucine-rich repeat pr 90.6 0.0046 1E-07 47.1 -6.4 86 74-168 37-124 (326)
76 smart00365 LRR_SD22 Leucine-ri 88.4 0.38 8.3E-06 23.4 1.6 15 154-168 1-15 (26)
77 PF13306 LRR_5: Leucine rich r 88.1 0.71 1.5E-05 31.0 3.4 93 53-158 35-129 (129)
78 smart00364 LRR_BAC Leucine-ric 87.4 0.38 8.2E-06 23.5 1.2 17 156-173 3-19 (26)
79 smart00368 LRR_RI Leucine rich 84.7 0.74 1.6E-05 22.6 1.5 14 155-168 2-15 (28)
80 KOG1947 Leucine rich repeat pr 69.3 3.3 7.1E-05 34.1 2.0 90 75-167 210-307 (482)
81 smart00367 LRR_CC Leucine-rich 51.1 10 0.00022 17.9 1.1 13 154-166 1-13 (26)
82 KOG3763 mRNA export factor TAP 41.9 15 0.00032 31.7 1.4 14 79-92 218-231 (585)
83 TIGR00864 PCC polycystin catio 35.4 39 0.00084 34.9 3.2 30 109-138 2-31 (2740)
84 KOG3763 mRNA export factor TAP 30.5 33 0.00072 29.7 1.7 59 53-116 218-284 (585)
85 KOG4242 Predicted myosin-I-bin 28.1 1.3E+02 0.0029 25.8 4.7 113 53-167 354-480 (553)
86 TIGR00864 PCC polycystin catio 26.9 40 0.00086 34.8 1.8 32 59-92 1-32 (2740)
87 KOG4341 F-box protein containi 24.4 89 0.0019 26.4 3.1 108 53-165 320-436 (483)
88 smart00446 LRRcap occurring C- 22.0 47 0.001 16.1 0.7 15 150-164 8-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=5.1e-21 Score=170.72 Aligned_cols=153 Identities=34% Similarity=0.562 Sum_probs=102.4
Q ss_pred ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCcEEEEEccCCccccccCCCcccccCcC
Q 041168 1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVH 80 (177)
Q Consensus 1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~ 80 (177)
+.||++||+++.++.. .+.+|+ ...+||.|.||.|... ++|+.|++++|.+.+.++. .+..++.
T Consensus 31 ~~~l~~~~~~~~~~~~----------~~~~w~---~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~--~~~~l~~ 94 (968)
T PLN00113 31 LELLLSFKSSINDPLK----------YLSNWN---SSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISS--AIFRLPY 94 (968)
T ss_pred HHHHHHHHHhCCCCcc----------cCCCCC---CCCCCCcCcceecCCC-CcEEEEEecCCCccccCCh--HHhCCCC
Confidence 3689999999975543 678997 6678999999999753 6899999998888877776 7777888
Q ss_pred CcEEEccCCCCCCCCCCcccc-CCccccc--cccccCC----------------------CCCChhhhCCCCCCEEeCCC
Q 041168 81 LEWLVLSNNHFNFSEIPSEIK-NLSRLTA--LSNPSFF----------------------GQIPAELLELSDLESLDLSF 135 (177)
Q Consensus 81 L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~--ls~n~l~----------------------~~~p~~~~~l~~L~~L~Ls~ 135 (177)
|+.|+|++|.+.+. +|..+. .+++|++ +++|++. +.+|..++.+++|++|++++
T Consensus 95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 88888888877765 665433 4555555 4444443 34455555556666666665
Q ss_pred CcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 136 NNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 136 N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
| .+ .+.+|..+.++++|++|++++|.+.+.+|..+
T Consensus 174 n--~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l 208 (968)
T PLN00113 174 N--VL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208 (968)
T ss_pred C--cc---cccCChhhhhCcCCCeeeccCCCCcCcCChHH
Confidence 5 33 34455555555555555555555555555443
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=6e-17 Score=138.63 Aligned_cols=151 Identities=26% Similarity=0.351 Sum_probs=123.6
Q ss_pred hHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCC--C--CcEEEEEccCCccccccCCCccccc
Q 041168 2 SALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNED--N--GHVIRLDLTSSCLYGSINSSSSLFQ 77 (177)
Q Consensus 2 ~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~c~~~--~--~~l~~L~l~~n~l~~~~~~~~~l~~ 77 (177)
+||+.+|..+..+. ..+|.+++..+..|.|.||.|... . ..++.|+|++|.+.+.+|. .+..
T Consensus 375 ~aL~~~k~~~~~~~------------~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~ 440 (623)
T PLN03150 375 SALQTLKSSLGLPL------------RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISK 440 (623)
T ss_pred HHHHHHHHhcCCcc------------cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhC
Confidence 57889999886432 247972111111237999999522 1 2589999999999999999 9999
Q ss_pred CcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcC-
Q 041168 78 LVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKL- 154 (177)
Q Consensus 78 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l- 154 (177)
+++|+.|+|++|.+.+. +|..+..+++|+. |++|++.+.+|..++.+++|++|+|++| .+ .+.+|..+..+
T Consensus 441 L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N--~l---~g~iP~~l~~~~ 514 (623)
T PLN03150 441 LRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN--SL---SGRVPAALGGRL 514 (623)
T ss_pred CCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC--cc---cccCChHHhhcc
Confidence 99999999999999988 9999999999999 9999999999999999999999999999 56 78899888764
Q ss_pred CCCCEEEeecccCCCCCC
Q 041168 155 ANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 155 ~~L~~L~Ls~N~l~g~~p 172 (177)
.++..+++.+|...+..|
T Consensus 515 ~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 515 LHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccCceEEecCCccccCCC
Confidence 577889999997665454
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.53 E-value=1.8e-14 Score=128.91 Aligned_cols=114 Identities=29% Similarity=0.402 Sum_probs=63.3
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
++++|++++|.+.+.+|. .+..+++|++|++++|.+.+. +|..+..+++|++ +++|.+.+.+|..++.+++|++|
T Consensus 141 ~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPN--DIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCCEEECcCCcccccCCh--HHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 444555555555444554 555566666666666665544 5555555666665 55555555555555555556666
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
++++| .+ .+.+|..+..+++|++|++++|.+++.+|..+
T Consensus 218 ~L~~n--~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 218 YLGYN--NL---SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred ECcCC--cc---CCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 55555 33 34455555555555555555555555555443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.8e-15 Score=108.32 Aligned_cols=117 Identities=27% Similarity=0.410 Sum_probs=93.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
++++.|.+++|.++ .+|+ .+..+.+|+.|++.+|++. . +|..++.++.|+. ++-|++. .+|..|+.++.|++
T Consensus 33 s~ITrLtLSHNKl~-~vpp--nia~l~nlevln~~nnqie-~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQIE-E-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhcccCcee-ecCC--cHHHhhhhhhhhcccchhh-h-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 67899999999998 6777 8999999999999999998 4 8999999999999 8889887 88999999999999
Q ss_pred EeCCCCcCCccc-C------------------CCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 131 LDLSFNNFHLKL-Q------------------GPSLANLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 131 L~Ls~N~~~l~~-~------------------~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
|||++|++.-.. + ...+|..++.+++|+.|.+..|.+. .+|.++|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence 999998643200 0 1234556666777777777777665 4666654
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=8.5e-14 Score=99.75 Aligned_cols=114 Identities=26% Similarity=0.341 Sum_probs=86.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
++++.|++..|++. .+|. .|+.++.|+.|||.+|.+....+|..|..++.|+. |+.|.|. .+|+.++.+++|+.
T Consensus 79 ~klr~lnvgmnrl~-~lpr--gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 79 PKLRILNVGMNRLN-ILPR--GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQI 154 (264)
T ss_pred hhhhheecchhhhh-cCcc--ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeE
Confidence 34555555555555 4555 66677777777777777664435666666666666 7777775 78999999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccccC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 177 (177)
|.+..|. + -.+|.+++.++.|++|++.+|.++ .+|.++++
T Consensus 155 l~lrdnd--l----l~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 155 LSLRDND--L----LSLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred EeeccCc--h----hhCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 9999994 4 468999999999999999999998 58888764
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=3.1e-12 Score=109.82 Aligned_cols=91 Identities=34% Similarity=0.500 Sum_probs=85.3
Q ss_pred CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCC
Q 041168 80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANL 157 (177)
Q Consensus 80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L 157 (177)
.++.|+|++|.+.+. +|..+..+++|+. |++|.+.+.+|..++.+++|+.|+|++| .+ .+.+|..++.+++|
T Consensus 419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N--~l---sg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN--SF---NGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC--CC---CCCCchHHhcCCCC
Confidence 478899999999988 9999999999999 9999999999999999999999999999 56 78899999999999
Q ss_pred CEEEeecccCCCCCCcccc
Q 041168 158 KVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 158 ~~L~Ls~N~l~g~~p~~l~ 176 (177)
++|+|++|.++|.+|..++
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CEEECcCCcccccCChHHh
Confidence 9999999999999998764
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=1.6e-11 Score=98.06 Aligned_cols=108 Identities=28% Similarity=0.353 Sum_probs=91.9
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|-+. .+|. ++..+..|+.|+++.|+|. . +|..+..+..++. .++|++...-|..+..|.+|.+
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~--e~~~lv~Lq~LnlS~NrFr-~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPE--EMGSLVRLQTLNLSFNRFR-M-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred hcceeeecccchhh-hcch--hhhhhhhhheecccccccc-c-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 57788999988776 6788 8889999999999999998 5 8998888888888 4558887555556999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
|||.+| .+ ..+|..+++|++|++|++.+|+|. .|.
T Consensus 510 LDL~nN--dl----q~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 510 LDLQNN--DL----QQIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred eccCCC--ch----hhCChhhccccceeEEEecCCccC--CCH
Confidence 999999 44 568999999999999999999998 454
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.08 E-value=1.2e-11 Score=98.68 Aligned_cols=110 Identities=32% Similarity=0.396 Sum_probs=82.0
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhh-CCCCCCE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELL-ELSDLES 130 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~-~l~~L~~ 130 (177)
+++.||.-.|-+. .+|+ .++.+..|..|+|.+|++. . +| .|..+..|.. ++.|.+. .+|.+.. ++++|.+
T Consensus 184 ~L~~ld~~~N~L~-tlP~--~lg~l~~L~~LyL~~Nki~-~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPP--ELGGLESLELLYLRRNKIR-F-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHhcccchhhhh-cCCh--hhcchhhhHHHHhhhcccc-c-CC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 3455555555444 5566 6777777777777777776 2 55 5666777766 6667665 5666655 8899999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccccC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 177 (177)
|||..| ++ +.+|+++.-+++|++||+|+|.|++ +|.++||
T Consensus 257 LDLRdN--kl----ke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn 296 (565)
T KOG0472|consen 257 LDLRDN--KL----KEVPDEICLLRSLERLDLSNNDISS-LPYSLGN 296 (565)
T ss_pred eecccc--cc----ccCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence 999999 44 6799999999999999999999995 8888875
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.05 E-value=1.3e-11 Score=102.45 Aligned_cols=80 Identities=29% Similarity=0.235 Sum_probs=40.4
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
+++.|+|+.|+++..-.. .+.+++.|+.|++++|.|... .++.+...++|+. |++|++...-+..|..+..|++|
T Consensus 270 kme~l~L~~N~l~~vn~g--~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEG--WLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ccceeecccchhhhhhcc--cccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 455555555555543333 455555555555555555544 4444555555555 55555553333444444444444
Q ss_pred eCCCC
Q 041168 132 DLSFN 136 (177)
Q Consensus 132 ~Ls~N 136 (177)
+|+.|
T Consensus 347 nLs~N 351 (873)
T KOG4194|consen 347 NLSHN 351 (873)
T ss_pred ccccc
Confidence 44444
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2e-10 Score=83.45 Aligned_cols=105 Identities=30% Similarity=0.292 Sum_probs=38.8
Q ss_pred CcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhh-hCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAEL-LELSDL 128 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~-~~l~~L 128 (177)
.+++.|++++|.|+. +. .+. .+.+|+.|++++|.|+. +. .+..++.|++ +++|++. .+.+.+ ..+++|
T Consensus 19 ~~~~~L~L~~n~I~~-Ie---~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-IE---NLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccc-cc---chhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 357889999998873 33 344 57789999999999984 43 5777888888 8999987 455545 468899
Q ss_pred CEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
++|++++|+|.- ... -..+..+++|+.|+|.+|+++.
T Consensus 91 ~~L~L~~N~I~~---l~~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSNNKISD---LNE-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TTS---S---CCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcCCcCCC---hHH-hHHHHcCCCcceeeccCCcccc
Confidence 999999995532 122 2456788999999999998863
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.94 E-value=1.3e-10 Score=100.51 Aligned_cols=103 Identities=34% Similarity=0.453 Sum_probs=84.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|+|++|++.. +|.. .+.++..|+.|+||+|+++ . +|..+..+..|++ ..+|.+. ..| .+..++.|+.
T Consensus 383 ~hLKVLhLsyNrL~~-fpas-~~~kle~LeeL~LSGNkL~-~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNS-FPAS-KLRKLEELEELNLSGNKLT-T-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred cceeeeeeccccccc-CCHH-HHhchHHhHHHhcccchhh-h-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 689999999999884 4431 6888999999999999999 5 8999999999999 6677776 677 7899999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN 166 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~ 166 (177)
+|++.|+++. ..+|..... ++|++||+++|.
T Consensus 457 lDlS~N~L~~----~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDLSCNNLSE----VTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred Eecccchhhh----hhhhhhCCC-cccceeeccCCc
Confidence 9999995542 344443322 799999999996
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.94 E-value=3.8e-11 Score=100.76 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=61.0
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCC-CCCChhhhCCCCCCE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF-GQIPAELLELSDLES 130 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~-~~~p~~~~~l~~L~~ 130 (177)
+++.|+|++|.|+. +.. ......+|+.|+||+|+++ . +|..+..++.|+. +.+|++. .-+|..|+.+.+|++
T Consensus 246 ~LrrLNLS~N~ite-L~~--~~~~W~~lEtLNlSrNQLt-~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITE-LNM--TEGEWENLETLNLSRNQLT-V-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhheeccCcCceee-eec--cHHHHhhhhhhccccchhc-c-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 34444444444441 222 2233344444555555554 3 5566666666665 4445443 135566666666666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
+..++|. + ..+|+.++++.+|+.|.|+.|.+. ++|+.|
T Consensus 321 f~aanN~--L----ElVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 321 FHAANNK--L----ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred HHhhccc--c----ccCchhhhhhHHHHHhccccccee-echhhh
Confidence 6666663 2 346777777888888888888776 466654
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.86 E-value=2.4e-10 Score=96.04 Aligned_cols=105 Identities=29% Similarity=0.391 Sum_probs=95.2
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
-++++|+++.|+++ .+|. .+..++.|+.|++.+|+++-..+|+.++.+..|+. +++|++. .+|+++..|..|+.
T Consensus 268 ~~lEtLNlSrNQLt-~LP~--avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPD--AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred hhhhhhccccchhc-cchH--HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence 57889999999999 6888 99999999999999999986558999999999999 7788776 89999999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l 167 (177)
|.|+.| ++ -.+|+.+.-++.|+.||+..|.-
T Consensus 344 L~L~~N--rL----iTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 344 LKLDHN--RL----ITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hccccc--ce----eechhhhhhcCCcceeeccCCcC
Confidence 999999 55 56899999999999999999964
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.85 E-value=1.2e-09 Score=90.98 Aligned_cols=107 Identities=23% Similarity=0.254 Sum_probs=73.6
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
++++.|+|.+|.|+..-.. ++..++.|+.|||+.|.|+. +| ..|..-.++++ |++|+|+..-...|..+.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se--~L~~l~alrslDLSrN~is~--i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSE--ELSALPALRSLDLSRNLISE--IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeeccccccccHH--HHHhHhhhhhhhhhhchhhc--ccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 5678888888877755555 67777778888888887774 33 44555566666 777777755556677777777
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
+|.|+.| ++ +..-+..|+++++|+.|+|..|.|.
T Consensus 201 tlkLsrN--ri---ttLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 201 TLKLSRN--RI---TTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred eeecccC--cc---cccCHHHhhhcchhhhhhcccccee
Confidence 7777777 55 4433455666777777777777764
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=3.7e-09 Score=63.54 Aligned_cols=54 Identities=35% Similarity=0.416 Sum_probs=26.9
Q ss_pred cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168 109 LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 109 ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l 167 (177)
+++|++....+..|..+++|++|++++| .+ ....+..|..+++|++|++++|+|
T Consensus 8 l~~n~l~~i~~~~f~~l~~L~~L~l~~N--~l---~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 8 LSNNKLTEIPPDSFSNLPNLETLDLSNN--NL---TSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ETSSTESEECTTTTTTGTTESEEEETSS--SE---SEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCCCCccCHHHHcCCCCCCEeEccCC--cc---CccCHHHHcCCCCCCEEeCcCCcC
Confidence 3334443222334455555666666655 33 233334555666666666666543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.73 E-value=8.2e-10 Score=95.75 Aligned_cols=105 Identities=31% Similarity=0.396 Sum_probs=92.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
..|+.|.+.+|.+++..-+ .+.++++|+.|+|++|.+. . +| ..+.++..|+. |++|++. .+|..+..+..|+
T Consensus 359 ~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~-~-fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLN-S-FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH 433 (1081)
T ss_pred HHHHHHHHhcCcccccchh--hhccccceeeeeecccccc-c-CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence 4678899999999987776 7899999999999999998 4 67 45778889999 9999998 8899999999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
+|...+| .+ ..+| ++..++.|+.+|++.|.++.
T Consensus 434 tL~ahsN--~l----~~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 434 TLRAHSN--QL----LSFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHhhcCC--ce----eech-hhhhcCcceEEecccchhhh
Confidence 9999999 44 4578 78999999999999999873
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=2e-08 Score=73.06 Aligned_cols=101 Identities=31% Similarity=0.262 Sum_probs=48.6
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccc-cCCccccc--cccccCCCCC-ChhhhCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTA--LSNPSFFGQI-PAELLELSDL 128 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L 128 (177)
.+++.|++++|.++. +. .+..++.|+.|++++|.|+. +.+.+ ..+++|+. +++|++...- -..+..+++|
T Consensus 42 ~~L~~L~Ls~N~I~~-l~---~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 42 DKLEVLDLSNNQITK-LE---GLPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKL 115 (175)
T ss_dssp TT--EEE-TTS--S---T---T----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred cCCCEEECCCCCCcc-cc---CccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCc
Confidence 579999999999984 43 47889999999999999994 65555 46899999 9999997421 2457789999
Q ss_pred CEEeCCCCcCCcccCCCc-hhHHhhcCCCCCEEEe
Q 041168 129 ESLDLSFNNFHLKLQGPS-LANLAEKLANLKVLHL 162 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~-~p~~~~~l~~L~~L~L 162 (177)
++|++.+|++.- ... -...+..+|+|+.||-
T Consensus 116 ~~L~L~~NPv~~---~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 116 RVLSLEGNPVCE---KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TT-GGGG---STTHHHHHHHH-TT-SEETT
T ss_pred ceeeccCCcccc---hhhHHHHHHHHcChhheeCC
Confidence 999999996432 122 2334778999999974
No 18
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.73 E-value=1e-08 Score=57.27 Aligned_cols=38 Identities=39% Similarity=0.863 Sum_probs=25.9
Q ss_pred ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCccceEEEc
Q 041168 1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEE-NRDCCLWDGIKCN 49 (177)
Q Consensus 1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~-~~~~C~w~gv~c~ 49 (177)
++||++||+++..++.. .+.+|+. . ..++|.|.||+|+
T Consensus 5 ~~aLl~~k~~l~~~~~~---------~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 5 RQALLAFKKSLNNDPSG---------VLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHCTT-SC-C---------CCTT--T--T--S-CCCSTTEEE-
T ss_pred HHHHHHHHHhcccccCc---------ccccCCC--cCCCCCeeeccEEeC
Confidence 47999999999964432 7999982 2 2799999999995
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-09 Score=85.37 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=91.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc---cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA---LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~---ls~n~l~~~~p~~~~~l~~L~ 129 (177)
...+.|+|..|.|+...+. +|..++.|+.|+|++|.|+.. -|..|..+.+|.. .++|+|.......|+++.+|+
T Consensus 67 ~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 5788999999999976666 899999999999999999977 7999999999888 566999855556789999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
.|.+.-| .+ .-...+.|..+++|..|.+-.|.+.
T Consensus 144 rLllNan--~i---~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 144 RLLLNAN--HI---NCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHhcChh--hh---cchhHHHHHHhhhcchhcccchhhh
Confidence 9988888 45 4556778888999988888888775
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=1.3e-08 Score=61.09 Aligned_cols=56 Identities=39% Similarity=0.454 Sum_probs=28.0
Q ss_pred CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168 80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN 136 (177)
Q Consensus 80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 136 (177)
+|++|++++|+++.. .+..|..+++|++ +++|.+....+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444421 1234444444444 4444444344445566666666666666
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.64 E-value=3.3e-08 Score=86.40 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 127 ~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
+|+.|++++| .+ ..+|..+..+++|+.|+|++|+|++.+|..+
T Consensus 423 ~L~~L~Ls~N--qL----t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRN--QL----TRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccC--cc----cccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4555666666 33 3578889999999999999999998877755
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.63 E-value=1.3e-07 Score=86.63 Aligned_cols=109 Identities=23% Similarity=0.289 Sum_probs=64.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++.++.+. .++. .+..+++|+.|+|+++..... +| .+..+++|++ +++|.....+|..+..+++|+.
T Consensus 611 ~~L~~L~L~~s~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcCcccc-cccc--ccccCCCCCEEECCCCCCcCc-CC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 35666677666665 3444 556667777777766543333 44 3566667776 6666555566777777777777
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++|. . ...+|..+ .+++|+.|++++|...+.+|
T Consensus 686 L~L~~c~-~----L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 686 LDMSRCE-N----LEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred EeCCCCC-C----cCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 7777652 2 23455433 45666666666654443343
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.55 E-value=3.5e-07 Score=83.91 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=88.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++.++.+. .+|. .+ .+.+|+.|++++|.+. . ++..+..+++|++ |+++.....+|. +..+++|++
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~--~f-~~~~L~~L~L~~s~l~-~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPS--NF-RPENLVKLQMQGSKLE-K-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET 661 (1153)
T ss_pred cccEEEEecCCCCC-CCCC--cC-CccCCcEEECcCcccc-c-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence 45778888887766 4565 44 5688999999999988 4 7888888999999 887765556764 788999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
|+|++|. . ...+|..+..+++|+.|++++|...+.+|..+
T Consensus 662 L~L~~c~--~---L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 662 LKLSDCS--S---LVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred EEecCCC--C---ccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 9999983 3 46789999999999999999987666777643
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.54 E-value=3.3e-08 Score=77.77 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=9.5
Q ss_pred hhcCCCCCEEEeecccCC
Q 041168 151 AEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 151 ~~~l~~L~~L~Ls~N~l~ 168 (177)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 444555555555555554
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.54 E-value=2.2e-08 Score=78.79 Aligned_cols=114 Identities=25% Similarity=0.235 Sum_probs=78.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcC---CcEEEccCCCCCCCC---CCccccCC-ccccc--cccccCCCC----CC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVH---LEWLVLSNNHFNFSE---IPSEIKNL-SRLTA--LSNPSFFGQ----IP 119 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~---L~~L~Ls~n~l~~~~---~p~~~~~l-~~L~~--ls~n~l~~~----~p 119 (177)
.+++.|++++|.+.+..+. .+..+.. |++|++++|.++... +...+..+ ++|+. +++|.+.+. ++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 81 CGLQELDLSDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred CceeEEEccCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 6899999999988754444 4555544 999999999887320 22345556 78888 889988742 33
Q ss_pred hhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 120 AELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
..+..+++|++|++++|.+.-.. ...++..+..+++|++|++++|.+.+
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAG-IRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHH-HHHHHHHHHhCCCCCEEeccCCccCh
Confidence 45667788999999999432100 01244556677899999999998864
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=2.7e-08 Score=82.80 Aligned_cols=101 Identities=27% Similarity=0.305 Sum_probs=74.0
Q ss_pred EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168 55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD 132 (177)
Q Consensus 55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~ 132 (177)
|++|.+++|+++ .+|. .+..+.+|..|+.+.|.+. . +|..++.+.+|+. +..|++. .+|+++. .-.|..||
T Consensus 145 Lkvli~sNNkl~-~lp~--~ig~~~tl~~ld~s~nei~-s-lpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lD 217 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPE--EIGLLPTLAHLDVSKNEIQ-S-LPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLD 217 (722)
T ss_pred ceeEEEecCccc-cCCc--ccccchhHHHhhhhhhhhh-h-chHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeee
Confidence 455555566655 3555 5566666777777777766 3 6777777777777 6777776 6777777 44588999
Q ss_pred CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
++.|+ + ..+|-.|.+|+.|++|-|.+|++.
T Consensus 218 fScNk--i----s~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 218 FSCNK--I----SYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cccCc--e----eecchhhhhhhhheeeeeccCCCC
Confidence 99994 3 458999999999999999999987
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.49 E-value=3.6e-07 Score=79.99 Aligned_cols=99 Identities=25% Similarity=0.347 Sum_probs=58.2
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
.++.|++++|.++ .+|. .+. .+|+.|++++|.++ . +|..+. ..|+. |++|++. .+|..+. .+|+.|
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~--~l~--~nL~~L~Ls~N~Lt-s-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L 267 (754)
T PRK15370 200 QITTLILDNNELK-SLPE--NLQ--GNIKTLYANSNQLT-S-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL 267 (754)
T ss_pred CCcEEEecCCCCC-cCCh--hhc--cCCCEEECCCCccc-c-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence 4566666666666 3444 332 46677777777766 3 554433 24555 6677665 5565543 467777
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
++++| .+ . .+|..+. ++|+.|+|++|+|++ +|.
T Consensus 268 ~Ls~N--~L---~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~ 300 (754)
T PRK15370 268 DLFHN--KI---S-CLPENLP--EELRYLSVYDNSIRT-LPA 300 (754)
T ss_pred ECcCC--cc---C-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence 77777 33 2 3554432 467777777777763 444
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=2e-08 Score=78.09 Aligned_cols=105 Identities=25% Similarity=0.216 Sum_probs=64.6
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+.++.|++++|.+.. +. .+..+++|+.|||++|.++. +...-..+-+.++ |+.|.+. .+ ..++.+-+|..
T Consensus 307 Pkir~L~lS~N~i~~-v~---nLa~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvn 378 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRT-VQ---NLAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVN 378 (490)
T ss_pred cceeEEeccccceee-eh---hhhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhhee
Confidence 566666666666652 22 35556666666666666652 2222233444555 6666653 22 45677788888
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
||+++|+|.- -.-...++++|.|+++.|.+|++.+
T Consensus 379 LDl~~N~Ie~----ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 379 LDLSSNQIEE----LDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccccccchhh----HHHhcccccccHHHHHhhcCCCccc
Confidence 8888884321 1123457888899999999998885
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=4e-08 Score=76.49 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=83.0
Q ss_pred CCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCC
Q 041168 50 EDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSD 127 (177)
Q Consensus 50 ~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~ 127 (177)
.+...++.+|+++|.|+ .+.. ++.-.+.++.|++++|.+.. + ..+..+++|+. |++|.++ .+...-..+-+
T Consensus 281 dTWq~LtelDLS~N~I~-~iDE--SvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDE--SVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred chHhhhhhccccccchh-hhhh--hhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 33457889999999988 4666 67778999999999999983 3 44888999999 9999987 44454557778
Q ss_pred CCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 128 L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
+++|.|+.| .+ .. -..+..+-+|..||+++|+|.
T Consensus 354 IKtL~La~N--~i----E~-LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 354 IKTLKLAQN--KI----ET-LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred Eeeeehhhh--hH----hh-hhhhHhhhhheeccccccchh
Confidence 999999999 33 22 245778899999999999985
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.42 E-value=3.7e-07 Score=79.98 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=57.8
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccC-------------------Cccccc--cccc
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKN-------------------LSRLTA--LSNP 112 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~-------------------l~~L~~--ls~n 112 (177)
.|+.|++++|.++ .+|. .+. ++|+.|++++|+++. +|..+.. .++|+. +++|
T Consensus 263 ~L~~L~Ls~N~L~-~LP~--~l~--~sL~~L~Ls~N~Lt~--LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPE--NLP--EELRYLSVYDNSIRT--LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred CCCEEECcCCccC-cccc--ccC--CCCcEEECCCCcccc--CcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence 5777888887777 3555 442 467777777777763 4432220 123444 4455
Q ss_pred cCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcc
Q 041168 113 SFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 113 ~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~ 174 (177)
.+. .+|..+ .++|+.|++++|+ + ..+|..+. ++|+.|+|++|+++ .+|..
T Consensus 336 ~Lt-~LP~~l--~~sL~~L~Ls~N~--L----~~LP~~lp--~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 336 ALT-SLPASL--PPELQVLDVSKNQ--I----TVLPETLP--PTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred ccc-cCChhh--cCcccEEECCCCC--C----CcCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence 544 244433 2567777777773 3 23454442 56777777777776 35554
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.36 E-value=8.2e-07 Score=77.85 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=18.9
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN 92 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 92 (177)
+++.|++.+|.++. +|. . +++|++|++++|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~--l---p~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA--L---PPELRTLEVSGNQLT 255 (788)
T ss_pred CCCEEEccCCcCCC-CCC--C---CCCCcEEEecCCccC
Confidence 45666666666663 333 1 355666666666665
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.28 E-value=2.2e-07 Score=74.49 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=65.6
Q ss_pred ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
.|..+++|+.|+|++|+++.. -+..|..+..++. |..|++...-...|.++..|++|+|.+| ++ +...|..|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N--~i---t~~~~~aF 342 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN--QI---TTVAPGAF 342 (498)
T ss_pred HHhhcccceEeccCCCccchh-hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC--ee---EEEecccc
Confidence 467778888888888888766 6677777777777 7778776554556777788888888888 44 45567777
Q ss_pred hcCCCCCEEEeecccCC
Q 041168 152 EKLANLKVLHLGQVNTA 168 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N~l~ 168 (177)
..+.+|.+|+|-.|++.
T Consensus 343 ~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccceeeeeehccCccc
Confidence 77778888887777764
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=6.8e-08 Score=80.44 Aligned_cols=109 Identities=29% Similarity=0.387 Sum_probs=75.7
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
..++.|+|+.|+++ .+|. .++.+ -|+.|.+++|+++ . +|+.++.+..|.. .+.|.+. .+|..++.+.+|+.
T Consensus 121 ~~lt~l~ls~NqlS-~lp~--~lC~l-pLkvli~sNNkl~-~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~ 193 (722)
T KOG0532|consen 121 EALTFLDLSSNQLS-HLPD--GLCDL-PLKVLIVSNNKLT-S-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD 193 (722)
T ss_pred hHHHHhhhccchhh-cCCh--hhhcC-cceeEEEecCccc-c-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence 34566777777776 4555 45544 3677777777777 3 6777776666666 6677776 66777777777777
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
|.+..| .+ ..+|+++..| .|..||++.|+++ .||-.|.
T Consensus 194 l~vrRn--~l----~~lp~El~~L-pLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 194 LNVRRN--HL----EDLPEELCSL-PLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred HHHhhh--hh----hhCCHHHhCC-ceeeeecccCcee-ecchhhh
Confidence 777777 33 4577887754 5888999999988 5776653
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=1.2e-06 Score=49.02 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=31.0
Q ss_pred CCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 126 ~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
++|++|++++| .+ ..+|..+++|++|++|++++|+|+.
T Consensus 1 ~~L~~L~l~~N--~i----~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN--QI----TDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS--S-----SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC--CC----cccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999 45 4578789999999999999999883
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=1.1e-06 Score=78.13 Aligned_cols=106 Identities=27% Similarity=0.279 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCc--cccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCC
Q 041168 52 NGHVIRLDLTSSC--LYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSD 127 (177)
Q Consensus 52 ~~~l~~L~l~~n~--l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~ 127 (177)
.+.+++|-+..|. +...... .|..++.|++|||++|.--+. +|..++.+-+||+ +++..+. .+|..++.+..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHH--HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 3578888888886 4422222 377799999999998776656 9999999999999 9999998 89999999999
Q ss_pred CCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc
Q 041168 128 LESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN 166 (177)
Q Consensus 128 L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~ 166 (177)
|.+|++..+. . ...+|.....|.+|++|.+-.-.
T Consensus 620 L~~Lnl~~~~-~----l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 620 LIYLNLEVTG-R----LESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hheecccccc-c----cccccchhhhcccccEEEeeccc
Confidence 9999999883 2 24456667779999999887654
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1.2e-06 Score=71.28 Aligned_cols=100 Identities=34% Similarity=0.425 Sum_probs=52.9
Q ss_pred cEEEEEccCCccccccCCCcccccCc-CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLV-HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++.|++.+|.++. ++. ....+. +|+.|++++|.+. . +|..+..++.|+. +++|++. .+|...+.++.|+.
T Consensus 117 ~l~~L~l~~n~i~~-i~~--~~~~~~~nL~~L~l~~N~i~-~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 117 NLTSLDLDNNNITD-IPP--LIGLLKSNLKELDLSDNKIE-S-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred ceeEEecCCccccc-Ccc--ccccchhhcccccccccchh-h-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 45556666665552 333 333342 5666666666665 2 4445555666666 5666655 44444445556666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV 165 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N 165 (177)
|++++|+ + ..+|.....+..|++|.+++|
T Consensus 191 L~ls~N~--i----~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNK--I----SDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCc--c----ccCchhhhhhhhhhhhhhcCC
Confidence 6666662 2 334444444444555555555
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.05 E-value=1.4e-06 Score=70.97 Aligned_cols=109 Identities=34% Similarity=0.407 Sum_probs=75.8
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
+++.|++++|.+. .++. .+..++.|+.|++++|++. . +|...+.++.|+. +++|++. .+|..+..+..|++|
T Consensus 141 nL~~L~l~~N~i~-~l~~--~~~~l~~L~~L~l~~N~l~-~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNKIE-SLPS--PLRNLPNLKNLDLSFNDLS-D-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL 214 (394)
T ss_pred hcccccccccchh-hhhh--hhhccccccccccCCchhh-h-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhh
Confidence 7889999999887 4544 5788888999999999888 3 6665557777777 8888887 667665566667777
Q ss_pred eCCCCc-CCccc-------------C---CCchhHHhhcCCCCCEEEeecccCC
Q 041168 132 DLSFNN-FHLKL-------------Q---GPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 132 ~Ls~N~-~~l~~-------------~---~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
.+++|. +.... . ...++..+..+++++.|++++|.++
T Consensus 215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred hhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 777772 11000 0 0112455667777888888888776
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=9.4e-07 Score=61.51 Aligned_cols=81 Identities=28% Similarity=0.402 Sum_probs=40.7
Q ss_pred cCCcEEEccCCCCCCCCCCccccC-Cccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCC
Q 041168 79 VHLEWLVLSNNHFNFSEIPSEIKN-LSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLA 155 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~ 155 (177)
..|+..+|++|.+.. .|+.|.. ++..++ |++|.++ .+|.++..++.|+.|+++.|+ + ...|..+..+.
T Consensus 53 ~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~--l----~~~p~vi~~L~ 123 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNP--L----NAEPRVIAPLI 123 (177)
T ss_pred ceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCc--c----ccchHHHHHHH
Confidence 344445555555552 4444433 224444 5555555 455555555555555555552 2 22444444455
Q ss_pred CCCEEEeecccCC
Q 041168 156 NLKVLHLGQVNTA 168 (177)
Q Consensus 156 ~L~~L~Ls~N~l~ 168 (177)
+|..|+..+|.+.
T Consensus 124 ~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 124 KLDMLDSPENARA 136 (177)
T ss_pred hHHHhcCCCCccc
Confidence 5555555555443
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=2e-06 Score=59.91 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=80.9
Q ss_pred CCcEEEEEccCCccccccCCCccc-ccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSL-FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL 128 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L 128 (177)
..+++.+++++|.+.. +|+ .| ..++.++.|+|++|+++ . +|..+..++.|+. ++.|.+. ..|..+..+.+|
T Consensus 52 ~~el~~i~ls~N~fk~-fp~--kft~kf~t~t~lNl~~neis-d-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK-FPK--KFTIKFPTATTLNLANNEIS-D-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred CceEEEEecccchhhh-CCH--HHhhccchhhhhhcchhhhh-h-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 3578999999999984 555 44 34568999999999999 3 8999999999999 9999998 678888889999
Q ss_pred CEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
-.|+..+|. . ..+|..+-.-...-..++.++.+.+.-|.
T Consensus 126 ~~Lds~~na--~----~eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 126 DMLDSPENA--R----AEIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred HHhcCCCCc--c----ccCcHHHhccccHHHHHhcCCcccccCcc
Confidence 999998883 3 33443322222222334566677665443
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=4.4e-07 Score=77.80 Aligned_cols=102 Identities=26% Similarity=0.259 Sum_probs=43.2
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
.++.|+|++|+++. +. .+..++.|++|||++|.+. . +|..-..-..|+. +++|.+. .+ ..+.++.+|+.|
T Consensus 188 ale~LnLshNk~~~-v~---~Lr~l~~LkhLDlsyN~L~-~-vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTK-VD---NLRRLPKLKHLDLSYNCLR-H-VPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGL 259 (1096)
T ss_pred Hhhhhccchhhhhh-hH---HHHhcccccccccccchhc-c-ccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhcc
Confidence 44555555555442 11 2444555555555555554 1 3321100111333 4444443 11 234555555555
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l 167 (177)
|+++| -+.. -.--..++.|..|+.|+|.+|++
T Consensus 260 DlsyN--ll~~--hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYN--LLSE--HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHh--hhhc--chhhhHHHHHHHHHHHhhcCCcc
Confidence 55555 2200 00111234445555555555554
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.9e-05 Score=44.18 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=27.1
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN 92 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 92 (177)
++++|++++|+++ .+++ .+.+++.|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~--~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP--ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGG--HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCc--hHhCCCCCCEEEecCCCCC
Confidence 5778888888888 4565 6888888888888888877
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=5.2e-07 Score=77.35 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=81.7
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCCh-hhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA-ELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~-~~~~l~~L~ 129 (177)
..+.+.++++|.+. .+.. ++.-++.++.|+|++|++... ..+..++.|++ |+.|.+. .+|. ....+. |+
T Consensus 164 n~L~~a~fsyN~L~-~mD~--SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDE--SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhHhhhhcchhhHH-hHHH--HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhh-he
Confidence 46788999999988 4555 788889999999999999854 37888999999 9999997 5654 223444 99
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
.|.|++| .+ + . -..+.+|++|+.||+++|-|++
T Consensus 236 ~L~lrnN--~l---~-t-L~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 236 LLNLRNN--AL---T-T-LRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeeeccc--HH---H-h-hhhHHhhhhhhccchhHhhhhc
Confidence 9999999 44 2 2 2357899999999999998875
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=2.8e-05 Score=69.45 Aligned_cols=105 Identities=30% Similarity=0.373 Sum_probs=80.5
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.+.+++||+++|.-.+.+|. .++.+-+|++|++++..+. . +|..+..+..|.+ +..+.....+|.....+.+|+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~--~I~~Li~LryL~L~~t~I~-~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPS--SIGELVHLRYLDLSDTGIS-H-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred CcceEEEECCCCCccCcCCh--HHhhhhhhhcccccCCCcc-c-cchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 47899999999877678999 9999999999999999998 5 9999999999999 776665545566667799999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEee
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls 163 (177)
+|.+-.-.... ....-..+..+.+|+.+...
T Consensus 646 ~L~l~~s~~~~---~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 646 VLRLPRSALSN---DKLLLKELENLEHLENLSIT 676 (889)
T ss_pred EEEeecccccc---chhhHHhhhcccchhhheee
Confidence 99885542122 33334445566666666553
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=2e-05 Score=64.93 Aligned_cols=102 Identities=29% Similarity=0.297 Sum_probs=60.0
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++..|.+.... . .+..+++|++|++++|.|+.. ..+..++.|+. +++|.+.. + ..+..++.|+.
T Consensus 95 ~~l~~l~l~~n~i~~i~-~--~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIE-N--LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKL 166 (414)
T ss_pred cceeeeeccccchhhcc-c--chhhhhcchheeccccccccc---cchhhccchhhheeccCcchh-c-cCCccchhhhc
Confidence 45677777777766432 1 255667777777777777632 23455555666 67777652 2 33445667777
Q ss_pred EeCCCCcCCcccCCCchhHH-hhcCCCCCEEEeecccCC
Q 041168 131 LDLSFNNFHLKLQGPSLANL-AEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~-~~~l~~L~~L~Ls~N~l~ 168 (177)
+++++|. + ..+... ...+.+++.+++.+|.+.
T Consensus 167 l~l~~n~--i----~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 167 LDLSYNR--I----VDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCCcch--h----hhhhhhhhhhccchHHHhccCCchh
Confidence 7777773 2 112221 355666777777777654
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=1.8e-05 Score=64.31 Aligned_cols=40 Identities=30% Similarity=0.216 Sum_probs=20.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN 92 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 92 (177)
++++.|||+.|-+....+-..-...+++|+.|+|+.|++.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 4566666666655432210002344566666666666654
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00013 Score=53.87 Aligned_cols=102 Identities=26% Similarity=0.258 Sum_probs=70.5
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC--CCChhhhCCCCCC
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG--QIPAELLELSDLE 129 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~--~~p~~~~~l~~L~ 129 (177)
....+||++|.+.. ++ .|..++.|.+|.|.+|.|+.. .|.--..+++|.. |.+|++.. .+ ..+..++.|+
T Consensus 43 ~~d~iDLtdNdl~~-l~---~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-LD---NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLE 116 (233)
T ss_pred ccceecccccchhh-cc---cCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhc-chhccCCccc
Confidence 56789999998873 33 477788999999999999964 4443345667888 88888762 22 2357888999
Q ss_pred EEeCCCCcCCcccCCCch-hHHhhcCCCCCEEEeec
Q 041168 130 SLDLSFNNFHLKLQGPSL-ANLAEKLANLKVLHLGQ 164 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~-p~~~~~l~~L~~L~Ls~ 164 (177)
+|.+-+|++.- .... --.+..+++|+.||.+.
T Consensus 117 ~Ltll~Npv~~---k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEH---KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhc---ccCceeEEEEecCcceEeehhh
Confidence 99998884311 0000 12356788999998764
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=4.9e-05 Score=61.90 Aligned_cols=108 Identities=25% Similarity=0.140 Sum_probs=51.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC--ccccCCccccc--cccccCCCC-CChh-----h
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP--SEIKNLSRLTA--LSNPSFFGQ-IPAE-----L 122 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p--~~~~~l~~L~~--ls~n~l~~~-~p~~-----~ 122 (177)
+.+..|++.+|........ ....+..|+.|+|++|.+.. .+ ...+.++.|+. ++.+.+... .|+. .
T Consensus 222 Psl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLID--FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred CcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccc--cccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 4455555555531111111 23344556666666666542 22 33445555555 555555421 1221 2
Q ss_pred hCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 123 LELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 123 ~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
..+++|++|+++.|++.- ...-..+..+++|+.|.+..|.++
T Consensus 298 ~~f~kL~~L~i~~N~I~~----w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRD----WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccceeeecccCcccc----ccccchhhccchhhhhhccccccc
Confidence 455666666666664321 111223445556666666666554
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.40 E-value=0.00015 Score=55.37 Aligned_cols=59 Identities=29% Similarity=0.255 Sum_probs=28.3
Q ss_pred cccCcCCcEEEccCC--CCCCCCCCccccCCccccc--cccccCCCCCCh---hhhCCCCCCEEeCCCC
Q 041168 75 LFQLVHLEWLVLSNN--HFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA---ELLELSDLESLDLSFN 136 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n--~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N 136 (177)
+..++.|+.|.++.| .+.+. ++-..-.+++|++ +++|++.. +. .+..+.+|..|++.+|
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccC
Confidence 445556666666666 33332 3322333455555 56665541 11 1234444555555555
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.38 E-value=3.8e-05 Score=63.27 Aligned_cols=102 Identities=27% Similarity=0.253 Sum_probs=77.1
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
.+..+.+..|.+.. +-. .+..+++|+.|++..|.|.. +...+..+++|++ +++|.|... ..+..++.|+.|
T Consensus 73 ~l~~l~l~~n~i~~-~~~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILN--HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHHhhccchhhhhh-hhc--ccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45556677777663 223 47888999999999999984 4444788999999 999999844 346778889999
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
++++|.+. .+ ..+..++.|+.+++++|.+..
T Consensus 146 ~l~~N~i~------~~-~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 146 NLSGNLIS------DI-SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eeccCcch------hc-cCCccchhhhcccCCcchhhh
Confidence 99999432 22 335568999999999999874
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.00042 Score=51.34 Aligned_cols=84 Identities=20% Similarity=0.170 Sum_probs=63.5
Q ss_pred cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCC
Q 041168 79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLAN 156 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~ 156 (177)
.....+||++|.+. ....|..++.|.+ +.+|+|...-|.--..+++|..|.|.+|.|.- .+.+ +.+..+++
T Consensus 42 d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~---l~dl-~pLa~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE---LGDL-DPLASCPK 114 (233)
T ss_pred cccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh---hhhc-chhccCCc
Confidence 46678999999987 3356788899999 89999985555544566789999999995432 2222 23678899
Q ss_pred CCEEEeecccCCC
Q 041168 157 LKVLHLGQVNTAS 169 (177)
Q Consensus 157 L~~L~Ls~N~l~g 169 (177)
|++|-+-+|+++.
T Consensus 115 L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 115 LEYLTLLGNPVEH 127 (233)
T ss_pred cceeeecCCchhc
Confidence 9999999998763
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00023 Score=62.27 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCcEEEEEccCCcccc-ccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCC
Q 041168 52 NGHVIRLDLTSSCLYG-SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSD 127 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~ 127 (177)
-|.++.|.+.+-.+.. .... ...++++|+.||+|+..++. + ..++.+++|+. +.+=.+.. ..-..+..|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~--lc~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQ--LCASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred CcccceEEecCceecchhHHH--HhhccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 3788888888876642 2223 45678999999999999983 3 67889999999 44433331 11135678999
Q ss_pred CCEEeCCCCcCCcccCCCchh----HHhhcCCCCCEEEeecccCCCCC
Q 041168 128 LESLDLSFNNFHLKLQGPSLA----NLAEKLANLKVLHLGQVNTASTV 171 (177)
Q Consensus 128 L~~L~Ls~N~~~l~~~~~~~p----~~~~~l~~L~~L~Ls~N~l~g~~ 171 (177)
|++||+|...... ...+. +.-..+|+|+.||.|+..+.+.+
T Consensus 222 L~vLDIS~~~~~~---~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 222 LRVLDISRDKNND---DTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred CCeeecccccccc---chHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9999999873211 11122 12235899999999998776543
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.18 E-value=9.8e-05 Score=58.57 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=24.7
Q ss_pred CcEEEEEccCCccccccCCC--cccccCcCCcEEEccCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSS--SSLFQLVHLEWLVLSNNHFN 92 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~ 92 (177)
++++.|+||.|.+....+.. .-+..+..|++|.|.+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 58999999999876332220 01334566777777766664
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.82 E-value=0.0043 Score=51.01 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=8.7
Q ss_pred CcEEEEEccCCccc
Q 041168 53 GHVIRLDLTSSCLY 66 (177)
Q Consensus 53 ~~l~~L~l~~n~l~ 66 (177)
.+++.|+++++.++
T Consensus 52 ~~l~~L~Is~c~L~ 65 (426)
T PRK15386 52 RASGRLYIKDCDIE 65 (426)
T ss_pred cCCCEEEeCCCCCc
Confidence 34567777766555
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.82 E-value=0.00033 Score=32.98 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.5
Q ss_pred CCCEEEeecccCCCCCCcccc
Q 041168 156 NLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 156 ~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
+|++|||++|+|+ .+|.+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677888888777 6777665
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.70 E-value=0.00026 Score=56.23 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=67.0
Q ss_pred CcEEEEEccCCcccc--c--cCCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCCCChhh-
Q 041168 53 GHVIRLDLTSSCLYG--S--INSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQIPAEL- 122 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~--~--~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~~p~~~- 122 (177)
+.+..+.+..|.|.. . +.. .+..+++|+.|||..|-++.. .+...+..+++|+. +++|.+...-..+|
T Consensus 185 ~~leevr~~qN~I~~eG~~al~e--al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAE--ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred cccceEEEecccccCchhHHHHH--HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 456666666666541 1 122 456678888888888887632 02244566667777 77777653322222
Q ss_pred ----hCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168 123 ----LELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 123 ----~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l 167 (177)
...++|++|.+.+|.+..+. ...+...+...+.|..|+|++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da-~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDA-ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHH-HHHHHHHHhcchhhHHhcCCcccc
Confidence 24678888888888543211 112233455678888888888887
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.50 E-value=0.0016 Score=49.86 Aligned_cols=88 Identities=25% Similarity=0.253 Sum_probs=58.7
Q ss_pred cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccc--cCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHH
Q 041168 75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNP--SFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANL 150 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~ 150 (177)
...+..|+.|.+.+..++. -..+..|++|++ ++.| ++.+.++...-.+++|++|++++|+++. ...++ .
T Consensus 39 ~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~-p 111 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLR-P 111 (260)
T ss_pred cccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccc-h
Confidence 3445566666666666652 235667788888 8888 5665666555667999999999996553 22232 2
Q ss_pred hhcCCCCCEEEeecccCCC
Q 041168 151 AEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 151 ~~~l~~L~~L~Ls~N~l~g 169 (177)
+..+.+|..|++.+|..++
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 5677788888888886553
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.28 E-value=0.0017 Score=56.95 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=72.5
Q ss_pred CcEEEEEccCCccc--cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC
Q 041168 53 GHVIRLDLTSSCLY--GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL 128 (177)
Q Consensus 53 ~~l~~L~l~~n~l~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L 128 (177)
.+++.|++++.... ++... --.-+|+|+.|.+++-.+..........++++|.. +++.+++ .+ .+++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK--IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHH--HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccH
Confidence 57888888886543 22211 12346899999998877753212344567888888 8888887 33 678899999
Q ss_pred CEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
++|.+.+=.|. ....-..+.+|++|++||+|.....
T Consensus 198 q~L~mrnLe~e----~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 198 QVLSMRNLEFE----SYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHHhccCCCCC----chhhHHHHhcccCCCeeeccccccc
Confidence 99877554221 1122235678999999999987654
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.002 Score=50.64 Aligned_cols=81 Identities=28% Similarity=0.211 Sum_probs=54.3
Q ss_pred CcEEEEEccCCcccccc--CCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCC-CChhhhCCCC
Q 041168 53 GHVIRLDLTSSCLYGSI--NSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQ-IPAELLELSD 127 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~-~p~~~~~l~~ 127 (177)
.+|+.+|+.+|.|+.+. .. -+.+++.|+.|+|+.|.+... +-.....+.+|++ |.+..+... ....+..+|.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~--ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGA--ILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhcccchhccHHHHHH--HHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 57888999999988542 23 456789999999999998853 3322245667777 555544422 2234566777
Q ss_pred CCEEeCCCC
Q 041168 128 LESLDLSFN 136 (177)
Q Consensus 128 L~~L~Ls~N 136 (177)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 778877777
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0015 Score=50.91 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=25.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG 116 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~ 116 (177)
+.|++|.|+-|.|+. +. .+..++.|++|+|..|.|.....-..+.++++|+. |..|...+
T Consensus 41 p~lEVLsLSvNkIss-L~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISS-LA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred ccceeEEeecccccc-ch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 344555555554442 11 23444455555555555442101123344444444 44444443
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.0024 Score=50.17 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=62.1
Q ss_pred cCcCCcEEEccCCCCCCCC-CCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhc
Q 041168 77 QLVHLEWLVLSNNHFNFSE-IPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK 153 (177)
Q Consensus 77 ~l~~L~~L~Ls~n~l~~~~-~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~ 153 (177)
..+.++.++|.+|.|+.+. +-.-+.+++.|++ ++.|.+...+...=..+.+|++|-|.+..+.. ......+..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w----~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW----TQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh----hhhhhhhhc
Confidence 3578999999999998541 1233567899999 99999874432211355689999998885443 334455778
Q ss_pred CCCCCEEEeecccCC
Q 041168 154 LANLKVLHLGQVNTA 168 (177)
Q Consensus 154 l~~L~~L~Ls~N~l~ 168 (177)
+|.+++|+++.|.+.
T Consensus 145 lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLR 159 (418)
T ss_pred chhhhhhhhccchhh
Confidence 899999999999543
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.45 E-value=0.0093 Score=26.08 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=6.7
Q ss_pred CCCEEEeecccCC
Q 041168 156 NLKVLHLGQVNTA 168 (177)
Q Consensus 156 ~L~~L~Ls~N~l~ 168 (177)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666777777655
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0044 Score=29.01 Aligned_cols=19 Identities=53% Similarity=0.775 Sum_probs=9.5
Q ss_pred CcEEEccCCCCCCCCCCcccc
Q 041168 81 LEWLVLSNNHFNFSEIPSEIK 101 (177)
Q Consensus 81 L~~L~Ls~n~l~~~~~p~~~~ 101 (177)
|++|++++|.++ . +|+.|+
T Consensus 2 L~~Ldls~n~l~-~-ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-S-IPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-E-EGTTTT
T ss_pred ccEEECCCCcCE-e-CChhhc
Confidence 455555555555 3 444433
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.0011 Score=51.62 Aligned_cols=96 Identities=24% Similarity=0.181 Sum_probs=71.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCCh--hhhCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPA--ELLELSDL 128 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~--~~~~l~~L 128 (177)
..++.|++-++++.++. -...++.|++|.|+-|+|+.. ..+..++.|+. |..|.|. .+.+ -+.++++|
T Consensus 19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence 46788888888888543 356789999999999999843 45788899998 9999886 3332 35789999
Q ss_pred CEEeCCCCcCCcccCCCchh-----HHhhcCCCCCEEE
Q 041168 129 ESLDLSFNNFHLKLQGPSLA-----NLAEKLANLKVLH 161 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~~p-----~~~~~l~~L~~L~ 161 (177)
+.|-|..|+ - .+.-+ ..+.-|++|+.||
T Consensus 91 r~LWL~ENP--C---c~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENP--C---CGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCC--c---ccccchhHHHHHHHHcccchhcc
Confidence 999999994 3 22222 2356788888876
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.87 E-value=0.023 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=10.9
Q ss_pred CCCCEEEeecccCCCCCCcc
Q 041168 155 ANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 155 ~~L~~L~Ls~N~l~g~~p~~ 174 (177)
++|++|+|++|.|. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666665 34443
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.87 E-value=0.023 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=10.9
Q ss_pred CCCCEEEeecccCCCCCCcc
Q 041168 155 ANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 155 ~~L~~L~Ls~N~l~g~~p~~ 174 (177)
++|++|+|++|.|. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666666666665 34443
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.0051 Score=48.46 Aligned_cols=40 Identities=25% Similarity=0.124 Sum_probs=25.8
Q ss_pred hCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc
Q 041168 123 LELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN 166 (177)
Q Consensus 123 ~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~ 166 (177)
..+++|.+|||+.|. .+ ....-.+|..++.|++|.++.|.
T Consensus 310 ~rcp~l~~LDLSD~v-~l---~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSV-ML---KNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HhCCceeeecccccc-cc---CchHHHHHHhcchheeeehhhhc
Confidence 456777777877763 33 34444556677777777777664
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.28 E-value=0.061 Score=42.08 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=22.3
Q ss_pred CcEEEEEccCCccccccCCCcc----cccCcCCcEEEccCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSS----LFQLVHLEWLVLSNNHFN 92 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~ 92 (177)
++++.++++.|.+....|+ . +..-+.|.+|.|++|.+.
T Consensus 92 p~l~~v~LSDNAfg~~~~e--~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPE--ELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcceeeeccccccCcccch--HHHHHHhcCCCceeEEeecCCCC
Confidence 5667777777766544433 2 233456666777666654
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.94 E-value=0.027 Score=43.94 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=44.6
Q ss_pred CcEEEEEccCCccccc----cCCCcccccCcCCcEEEccCCCCCCC--CCC-------ccccCCccccc--cccccCCCC
Q 041168 53 GHVIRLDLTSSCLYGS----INSSSSLFQLVHLEWLVLSNNHFNFS--EIP-------SEIKNLSRLTA--LSNPSFFGQ 117 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~p-------~~~~~l~~L~~--ls~n~l~~~ 117 (177)
..++.+++++|.|... +.. .+.+-.+|+..+++.-..... .++ +.+..++.|+. ||.|-|...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCN--VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHH--HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4677888888877532 222 344556666666655322110 011 23444566666 666666544
Q ss_pred CChh----hhCCCCCCEEeCCCC
Q 041168 118 IPAE----LLELSDLESLDLSFN 136 (177)
Q Consensus 118 ~p~~----~~~l~~L~~L~Ls~N 136 (177)
.|+. +.+-+.|.+|.+++|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC
Confidence 4443 345556666666666
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.92 E-value=0.12 Score=42.69 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=30.9
Q ss_pred cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168 75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN 136 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 136 (177)
+..+..++.|++++|.++ . +|. + ..+|+. ++++.-...+|..+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-S-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-c-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344567788888888776 3 552 1 123555 55433223555433 246777777766
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.85 E-value=0.0031 Score=48.00 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=64.9
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
..++++||++.|++. .+.. .+..++.+..|+++.|.+. . +|..+..+..++. +..|.. ...|.+++..+.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~--n~s~~t~~~rl~~sknq~~-~-~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGK--NFSILTRLVRLDLSKNQIK-F-LPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHH-hhcc--chHHHHHHHHHhccHhhHh-h-ChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence 468999999999876 3444 5777888899999999998 4 7888888888888 444554 48899999999999
Q ss_pred EEeCCCCc
Q 041168 130 SLDLSFNN 137 (177)
Q Consensus 130 ~L~Ls~N~ 137 (177)
++++..|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 99998884
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.13 E-value=0.0054 Score=29.24 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=6.3
Q ss_pred CCCCEEEeecccCCC
Q 041168 155 ANLKVLHLGQVNTAS 169 (177)
Q Consensus 155 ~~L~~L~Ls~N~l~g 169 (177)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.08 E-value=0.29 Score=32.93 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=52.0
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.+.+.. .+...-.. .|..++.|+.+.+..+ +... -...|..+..|+. +.. .+.......+..+++|+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~--~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGEN--AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT--EEEETS-T--EE-TT--TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCEEEECC-CeeEeChh--hccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccccccccc
Confidence 4678888874 45544444 6788888999998875 5532 2355777767887 544 443233456677889999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeec
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQ 164 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~ 164 (177)
+++..+ + ...-...|.+. +|+.+.+..
T Consensus 86 i~~~~~---~---~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN---I---TEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT-------BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc---c---cEEchhhhcCC-CceEEEECC
Confidence 988665 1 11123346665 888888765
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.0064 Score=47.92 Aligned_cols=87 Identities=23% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCC
Q 041168 80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANL 157 (177)
Q Consensus 80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L 157 (177)
.|++|||+...|+...+-.-+..+.+|+. +.++++...+-..+..-.+|+.|+|+.+. .+ ....+.-.+..++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~--t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GF--TENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-cc--chhHHHHHHHhhhhH
Confidence 48889999888873212234566778888 88999988777888888999999998772 22 011233457788999
Q ss_pred CEEEeecccCCC
Q 041168 158 KVLHLGQVNTAS 169 (177)
Q Consensus 158 ~~L~Ls~N~l~g 169 (177)
..|+|+.+.+..
T Consensus 263 ~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 263 DELNLSWCFLFT 274 (419)
T ss_pred hhcCchHhhccc
Confidence 999999987654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=0.096 Score=39.00 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=22.6
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCC
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH 90 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~ 90 (177)
.|+.+|-++..|...--. .+..++.|+.|.+.+++
T Consensus 102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHH--HHhccchhhhheecccc
Confidence 577777777777654444 56666666666665554
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.61 E-value=0.0046 Score=47.07 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=70.6
Q ss_pred ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
.+..+...+.||++.|++-. +-..|+.++.|.. ++.|.+. .+|..++....+..+++..| .. ...|..+
T Consensus 37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n--~~----~~~p~s~ 107 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKN--NH----SQQPKSQ 107 (326)
T ss_pred hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhcc--ch----hhCCccc
Confidence 56677889999999999863 5556777777777 8888887 78999999999999998877 43 5678889
Q ss_pred hcCCCCCEEEeecccCC
Q 041168 152 EKLANLKVLHLGQVNTA 168 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N~l~ 168 (177)
+..++++++++-+|.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 99999999999998864
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.40 E-value=0.38 Score=23.43 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=11.4
Q ss_pred CCCCCEEEeecccCC
Q 041168 154 LANLKVLHLGQVNTA 168 (177)
Q Consensus 154 l~~L~~L~Ls~N~l~ 168 (177)
+++|+.|+++.|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357788888888875
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.05 E-value=0.71 Score=30.95 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=45.0
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
..++.+.+..+ +...... .+..+..|+.+.+.. .+... -...|..++.|+. +..+ +...-...+..+ .|+.
T Consensus 35 ~~l~~i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i-~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSI-GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TT-SEEEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE--TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred ccccccccccc-cccccee--eeecccccccccccc-ccccc-ccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 46888888775 5544344 678888899999976 44322 2345667888888 5443 443334567776 8999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLK 158 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~ 158 (177)
+.+..+ + ...-...|.++++|+
T Consensus 108 i~~~~~---~---~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 108 INIPSN---I---TKIEENAFKNCTKLK 129 (129)
T ss_dssp EE-TTB-------SS----GGG------
T ss_pred EEECCC---c---cEECCccccccccCC
Confidence 988765 1 222334566665553
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.43 E-value=0.38 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=10.9
Q ss_pred CCCEEEeecccCCCCCCc
Q 041168 156 NLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 156 ~L~~L~Ls~N~l~g~~p~ 173 (177)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5666777777766 4554
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.66 E-value=0.74 Score=22.64 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=10.3
Q ss_pred CCCCEEEeecccCC
Q 041168 155 ANLKVLHLGQVNTA 168 (177)
Q Consensus 155 ~~L~~L~Ls~N~l~ 168 (177)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888774
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.30 E-value=3.3 Score=34.15 Aligned_cols=90 Identities=24% Similarity=0.233 Sum_probs=45.5
Q ss_pred cccCcCCcEEEccCCCCCCCCCC----ccccCCccccc--ccccc-CCCCCChhhh-CCCCCCEEeCCCCcCCcccCCCc
Q 041168 75 LFQLVHLEWLVLSNNHFNFSEIP----SEIKNLSRLTA--LSNPS-FFGQIPAELL-ELSDLESLDLSFNNFHLKLQGPS 146 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n~l~~~~~p----~~~~~l~~L~~--ls~n~-l~~~~p~~~~-~l~~L~~L~Ls~N~~~l~~~~~~ 146 (177)
....+.|+.|+++++.......+ .....+++|+. ++.+. ++...-..+. .+++|++|.+.++. .+ ....
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~-~l--t~~g 286 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS-NL--TDEG 286 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC-cc--chhH
Confidence 45567788888776311101011 12233455555 55554 3322222222 36788888766552 11 0122
Q ss_pred hhHHhhcCCCCCEEEeecccC
Q 041168 147 LANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 147 ~p~~~~~l~~L~~L~Ls~N~l 167 (177)
+-.....+++|++|+|+++..
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHHhcCcccEEeeecCcc
Confidence 334455677788888887654
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.07 E-value=10 Score=17.91 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=9.8
Q ss_pred CCCCCEEEeeccc
Q 041168 154 LANLKVLHLGQVN 166 (177)
Q Consensus 154 l~~L~~L~Ls~N~ 166 (177)
+++|++|+|+++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888874
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.89 E-value=15 Score=31.69 Aligned_cols=14 Identities=36% Similarity=0.318 Sum_probs=6.4
Q ss_pred cCCcEEEccCCCCC
Q 041168 79 VHLEWLVLSNNHFN 92 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~ 92 (177)
+.+..+.|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34444444444443
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.39 E-value=39 Score=34.90 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=16.3
Q ss_pred cccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168 109 LSNPSFFGQIPAELLELSDLESLDLSFNNF 138 (177)
Q Consensus 109 ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~ 138 (177)
|++|+|....+..|..+++|+.|+|++|++
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 345555533334455566666666666644
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.47 E-value=33 Score=29.68 Aligned_cols=59 Identities=25% Similarity=0.261 Sum_probs=36.1
Q ss_pred CcEEEEEccCCcccccc--CCCcccccCcCCcEEEccCC--CCCCCCCCccccCCcc--ccc--cccccCCC
Q 041168 53 GHVIRLDLTSSCLYGSI--NSSSSLFQLVHLEWLVLSNN--HFNFSEIPSEIKNLSR--LTA--LSNPSFFG 116 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~--~~~~~l~~l~~L~~L~Ls~n--~l~~~~~p~~~~~l~~--L~~--ls~n~l~~ 116 (177)
+.|..+.|++|++...- .. --...+.|..|+|++| .+. ....+..+.. |+. |.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~ss--lsq~apklk~L~LS~N~~~~~---~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSS--LSQIAPKLKTLDLSHNHSKIS---SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhH--HHHhcchhheeecccchhhhc---chhhhhhhcCCCHHHeeecCCcccc
Confidence 67899999999886321 11 1123478999999999 443 2223333333 333 77777764
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=28.11 E-value=1.3e+02 Score=25.78 Aligned_cols=113 Identities=17% Similarity=0.018 Sum_probs=57.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc----------cccccCCCCCCh--
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA----------LSNPSFFGQIPA-- 120 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~----------ls~n~l~~~~p~-- 120 (177)
-++++|.+..|.+.+.......+..-+.++.+.+..-.-.....+.....+..+++ ++.+.+...+..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 46899999999887766542234444667777765433211112222222222221 444444422222
Q ss_pred -hhhCCCCCCEEeCCCCcCCcc-cCCCchhHHhhcCCCCCEEEeecccC
Q 041168 121 -ELLELSDLESLDLSFNNFHLK-LQGPSLANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 121 -~~~~l~~L~~L~Ls~N~~~l~-~~~~~~p~~~~~l~~L~~L~Ls~N~l 167 (177)
....-+.+..|++++|. +. +....+|.....-.+++.+..+.|..
T Consensus 434 n~l~stqtl~kldisgn~--mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNG--MGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred HhhccCcccccccccCCC--cccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 22344568888898883 21 11223444444445666666666544
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.89 E-value=40 Score=34.83 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=25.5
Q ss_pred EccCCccccccCCCcccccCcCCcEEEccCCCCC
Q 041168 59 DLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN 92 (177)
Q Consensus 59 ~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 92 (177)
||++|+|+...+. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g--~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEG--ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChH--HhccCCCceEEEeeCCccc
Confidence 5788988854445 7788899999999998875
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=24.44 E-value=89 Score=26.35 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=50.1
Q ss_pred CcEEEEEccCCcc-ccccCCCcccccCcCCcEEEccCCCCCCCC-CCccccCCccccc--cccccCCCCC-----Chhhh
Q 041168 53 GHVIRLDLTSSCL-YGSINSSSSLFQLVHLEWLVLSNNHFNFSE-IPSEIKNLSRLTA--LSNPSFFGQI-----PAELL 123 (177)
Q Consensus 53 ~~l~~L~l~~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~p~~~~~l~~L~~--ls~n~l~~~~-----p~~~~ 123 (177)
++|++|-++.+.. +..-... --.+.++|+.+++..+...... +...-.+.+.||. ++++...... ...-.
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~-l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTM-LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CceEEEeccccchhhhhhhhh-hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 5778887777652 2111110 1124456677766655443110 1111223455666 6655443211 11113
Q ss_pred CCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168 124 ELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV 165 (177)
Q Consensus 124 ~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N 165 (177)
.+..|+.+.|++.+. + ....-+.+..+++|+.+++-.+
T Consensus 399 ~~~~l~~lEL~n~p~-i---~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPL-I---TDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccccceeeecCCCC-c---hHHHHHHHhhCcccceeeeech
Confidence 345567777766631 1 2222233455566666666554
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.95 E-value=47 Score=16.08 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=11.1
Q ss_pred HhhcCCCCCEEEeec
Q 041168 150 LAEKLANLKVLHLGQ 164 (177)
Q Consensus 150 ~~~~l~~L~~L~Ls~ 164 (177)
.+..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 466788888888654
Done!