Query 041168
Match_columns 177
No_of_seqs 280 out of 2367
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-26 7.9E-31 180.3 10.5 154 1-176 8-170 (313)
2 4eco_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 174.5 6.8 161 1-176 32-296 (636)
3 3rgz_A Protein brassinosteroid 99.9 3.7E-22 1.3E-26 173.0 8.5 117 1-136 14-161 (768)
4 4ecn_A Leucine-rich repeat pro 99.8 8.1E-21 2.8E-25 166.4 6.8 156 1-176 271-538 (876)
5 4fcg_A Uncharacterized protein 99.8 3.6E-21 1.2E-25 151.8 3.0 121 1-136 29-160 (328)
6 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6.1E-23 129.8 12.3 131 36-175 14-155 (229)
7 2o6s_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 121.1 11.6 124 41-172 7-141 (208)
8 2v9t_B SLIT homolog 2 protein 99.7 2E-17 6.8E-22 123.4 10.8 127 41-175 11-148 (220)
9 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.6E-22 121.8 8.7 125 41-172 8-143 (192)
10 2o6r_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 117.7 10.3 124 41-172 7-141 (177)
11 2v70_A SLIT-2, SLIT homolog 2 99.7 5E-17 1.7E-21 121.2 10.0 129 41-176 11-150 (220)
12 4g8a_A TOLL-like receptor 4; l 99.7 4.1E-17 1.4E-21 137.1 10.0 148 20-175 5-169 (635)
13 3m19_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 122.7 9.9 111 54-172 60-172 (251)
14 2o6q_A Variable lymphocyte rec 99.7 2.6E-16 9E-21 120.4 10.3 109 53-169 37-147 (270)
15 4fcg_A Uncharacterized protein 99.7 1.6E-16 5.4E-21 125.1 8.9 115 53-177 183-299 (328)
16 2wfh_A SLIT homolog 2 protein 99.7 5.4E-16 1.8E-20 113.5 10.0 121 41-170 10-141 (193)
17 2v70_A SLIT-2, SLIT homolog 2 99.7 3.6E-16 1.2E-20 116.5 9.0 113 52-172 56-170 (220)
18 1ogq_A PGIP-2, polygalacturona 99.6 6.2E-17 2.1E-21 126.6 4.2 116 53-176 76-195 (313)
19 3m19_A Variable lymphocyte rec 99.6 1.2E-15 4.2E-20 115.5 11.1 108 54-169 36-145 (251)
20 3rgz_A Protein brassinosteroid 99.6 6.4E-16 2.2E-20 133.9 9.5 115 54-176 443-559 (768)
21 3v47_A TOLL-like receptor 5B a 99.6 1.1E-15 3.9E-20 124.3 9.5 128 39-174 6-148 (455)
22 3rfs_A Internalin B, repeat mo 99.6 3E-15 1E-19 114.7 11.1 112 53-172 85-198 (272)
23 2z81_A CD282 antigen, TOLL-lik 99.6 1.1E-15 3.7E-20 127.1 9.1 125 40-172 3-140 (549)
24 3vq2_A TLR4, TOLL-like recepto 99.6 2E-15 6.8E-20 127.0 10.6 115 53-173 32-171 (606)
25 2v9t_B SLIT homolog 2 protein 99.6 2.3E-15 7.9E-20 112.1 9.7 109 53-169 56-166 (220)
26 2o6s_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 108.7 10.6 112 53-172 52-165 (208)
27 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 103.7 8.2 110 53-172 17-130 (149)
28 3e6j_A Variable lymphocyte rec 99.6 8.9E-15 3.1E-19 109.5 10.2 111 53-172 64-176 (229)
29 2z80_A TOLL-like receptor 2, v 99.6 4.2E-15 1.4E-19 117.6 8.8 124 36-169 25-164 (353)
30 3rfs_A Internalin B, repeat mo 99.6 1.1E-14 3.7E-19 111.6 10.9 112 53-172 109-222 (272)
31 2xot_A Amphoterin-induced prot 99.6 4.5E-15 1.5E-19 118.1 8.9 121 41-169 18-150 (361)
32 2ell_A Acidic leucine-rich nuc 99.6 8.2E-15 2.8E-19 104.3 9.3 104 54-168 25-133 (168)
33 1p9a_G Platelet glycoprotein I 99.6 2.6E-14 8.9E-19 110.7 12.4 113 53-175 77-191 (290)
34 3g39_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 103.5 10.3 105 56-171 12-118 (170)
35 4g8a_A TOLL-like receptor 4; l 99.6 5.3E-15 1.8E-19 124.2 9.0 116 53-175 76-193 (635)
36 1ozn_A Reticulon 4 receptor; N 99.6 9.6E-15 3.3E-19 112.3 9.6 109 53-169 56-167 (285)
37 2z62_A TOLL-like receptor 4, v 99.6 1.4E-14 4.9E-19 110.8 10.3 114 53-174 52-168 (276)
38 2id5_A Lingo-1, leucine rich r 99.6 9.7E-15 3.3E-19 119.7 9.6 123 43-173 13-146 (477)
39 1w8a_A SLIT protein; signaling 99.6 7.6E-15 2.6E-19 107.1 7.9 110 56-176 11-123 (192)
40 3vq2_A TLR4, TOLL-like recepto 99.6 1.2E-14 4E-19 122.3 10.1 111 53-171 80-197 (606)
41 2o6q_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 108.8 11.2 108 54-169 86-195 (270)
42 3v47_A TOLL-like receptor 5B a 99.6 9.8E-15 3.4E-19 118.7 8.7 112 53-172 299-412 (455)
43 2z66_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 113.7 7.7 114 54-175 127-243 (306)
44 1ozn_A Reticulon 4 receptor; N 99.5 2.4E-14 8.2E-19 110.0 10.2 115 53-175 80-197 (285)
45 2z62_A TOLL-like receptor 4, v 99.5 1.5E-14 5.2E-19 110.7 8.7 114 54-175 29-145 (276)
46 3o6n_A APL1; leucine-rich repe 99.5 6.8E-15 2.3E-19 117.8 7.0 112 53-173 45-159 (390)
47 4b8c_D Glucose-repressible alc 99.5 3.2E-15 1.1E-19 129.1 5.3 111 53-175 224-336 (727)
48 1ziw_A TOLL-like receptor 3; i 99.5 2.2E-14 7.7E-19 122.2 10.3 113 53-173 25-139 (680)
49 4eco_A Uncharacterized protein 99.5 3.5E-15 1.2E-19 126.9 4.7 115 52-176 205-350 (636)
50 2r9u_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 101.0 10.4 104 56-170 15-120 (174)
51 3oja_B Anopheles plasmodium-re 99.5 1.4E-14 4.7E-19 122.3 8.2 110 55-172 53-164 (597)
52 3j0a_A TOLL-like receptor 5; m 99.5 2.1E-14 7.3E-19 125.5 8.6 96 74-175 68-168 (844)
53 2xot_A Amphoterin-induced prot 99.5 2.4E-14 8.3E-19 113.9 8.2 111 52-172 63-179 (361)
54 3t6q_A CD180 antigen; protein- 99.5 3.9E-14 1.3E-18 119.1 9.5 109 53-169 33-143 (606)
55 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.3E-18 100.8 10.9 108 56-175 13-122 (193)
56 4b8c_D Glucose-repressible alc 99.5 2.8E-14 9.5E-19 123.2 8.4 93 74-176 219-313 (727)
57 2ell_A Acidic leucine-rich nuc 99.5 4E-14 1.4E-18 100.7 7.9 111 53-174 49-165 (168)
58 2z63_A TOLL-like receptor 4, v 99.5 6E-14 2E-18 116.9 8.8 115 53-175 52-169 (570)
59 1dce_A Protein (RAB geranylger 99.5 9.2E-14 3.1E-18 116.9 9.8 106 54-172 442-550 (567)
60 4ezg_A Putative uncharacterize 99.5 6.8E-14 2.3E-18 102.2 7.7 104 54-168 67-172 (197)
61 2ft3_A Biglycan; proteoglycan, 99.5 1.3E-13 4.4E-18 108.2 9.5 117 41-168 33-160 (332)
62 2z63_A TOLL-like receptor 4, v 99.5 9.1E-14 3.1E-18 115.8 8.8 116 53-176 28-146 (570)
63 1p9a_G Platelet glycoprotein I 99.5 2.2E-13 7.4E-18 105.5 10.2 109 53-173 55-165 (290)
64 1xku_A Decorin; proteoglycan, 99.5 3.1E-13 1.1E-17 105.8 11.3 91 40-136 30-131 (330)
65 3zyi_A Leucine-rich repeat-con 99.5 1.2E-13 4.2E-18 112.7 9.0 92 43-137 56-158 (452)
66 2id5_A Lingo-1, leucine rich r 99.5 8.7E-14 3E-18 114.0 8.0 109 53-169 56-166 (477)
67 3oja_B Anopheles plasmodium-re 99.5 1.9E-13 6.6E-18 115.3 10.3 110 53-170 75-186 (597)
68 2z81_A CD282 antigen, TOLL-lik 99.5 4.3E-14 1.5E-18 117.5 6.0 117 52-176 49-169 (549)
69 2z66_A Variable lymphocyte rec 99.5 6.8E-14 2.3E-18 108.5 6.7 91 75-171 122-215 (306)
70 3o6n_A APL1; leucine-rich repe 99.5 2.9E-13 1E-17 108.3 10.4 110 53-170 69-180 (390)
71 2xwt_C Thyrotropin receptor; s 99.5 1.1E-13 3.8E-18 103.8 7.1 107 53-169 31-145 (239)
72 4ezg_A Putative uncharacterize 99.4 2.9E-13 9.9E-18 98.8 8.7 108 53-172 44-153 (197)
73 1ziw_A TOLL-like receptor 3; i 99.4 1.4E-13 4.8E-18 117.3 8.0 111 53-172 49-162 (680)
74 3j0a_A TOLL-like receptor 5; m 99.4 2.8E-13 9.6E-18 118.5 10.0 122 41-172 14-140 (844)
75 2z80_A TOLL-like receptor 2, v 99.4 7.9E-14 2.7E-18 110.3 5.8 116 52-176 75-195 (353)
76 2o6r_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 93.9 11.4 107 56-174 10-118 (177)
77 3oja_A Leucine-rich immune mol 99.4 1.8E-13 6E-18 113.1 8.0 122 41-175 109-233 (487)
78 4ecn_A Leucine-rich repeat pro 99.4 6.4E-14 2.2E-18 122.9 5.6 114 52-176 447-592 (876)
79 3zyj_A Leucine-rich repeat-con 99.4 3.5E-13 1.2E-17 109.7 9.3 92 43-137 45-147 (440)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.6E-13 1.2E-17 112.6 9.0 106 53-169 52-160 (562)
81 3t6q_A CD180 antigen; protein- 99.4 4.5E-13 1.5E-17 112.7 9.4 111 55-173 427-541 (606)
82 2z7x_B TOLL-like receptor 1, v 99.4 1.3E-13 4.5E-18 114.0 6.0 104 54-168 22-128 (520)
83 1a9n_A U2A', U2A'; complex (nu 99.4 5.3E-13 1.8E-17 95.8 8.3 102 54-168 20-126 (176)
84 1wwl_A Monocyte differentiatio 99.4 1.8E-13 6.2E-18 106.7 5.8 88 79-172 149-245 (312)
85 1wwl_A Monocyte differentiatio 99.4 2.2E-13 7.4E-18 106.2 6.1 79 54-136 96-183 (312)
86 3g39_A Variable lymphocyte rec 99.4 9.2E-13 3.2E-17 94.3 8.8 95 41-138 9-114 (170)
87 2je0_A Acidic leucine-rich nuc 99.4 1.8E-13 6.3E-18 95.4 4.7 103 52-164 41-149 (149)
88 2z7x_B TOLL-like receptor 1, v 99.4 4.8E-13 1.6E-17 110.6 7.8 107 56-176 3-112 (520)
89 1xku_A Decorin; proteoglycan, 99.4 1.5E-12 5.1E-17 102.0 8.9 83 80-169 193-277 (330)
90 4glp_A Monocyte differentiatio 99.4 3.6E-13 1.2E-17 104.9 5.3 113 53-174 145-269 (310)
91 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-13 1.4E-17 96.4 5.1 103 53-168 42-153 (176)
92 3zyj_A Leucine-rich repeat-con 99.4 1.3E-12 4.5E-17 106.3 8.8 81 53-136 88-170 (440)
93 2ft3_A Biglycan; proteoglycan, 99.4 1.3E-12 4.4E-17 102.5 8.0 87 79-172 193-281 (332)
94 3zyi_A Leucine-rich repeat-con 99.4 1.6E-12 5.4E-17 106.1 8.4 81 53-136 99-181 (452)
95 3o53_A Protein LRIM1, AGAP0063 99.4 1.5E-12 5.1E-17 101.7 7.7 104 54-168 121-227 (317)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.1E-12 1E-16 107.0 9.1 108 55-176 33-143 (562)
97 3o53_A Protein LRIM1, AGAP0063 99.3 9.4E-13 3.2E-17 102.8 5.4 111 53-175 144-258 (317)
98 2xwt_C Thyrotropin receptor; s 99.3 9.6E-13 3.3E-17 98.6 5.2 110 53-173 55-173 (239)
99 3oja_A Leucine-rich immune mol 99.3 2E-12 6.8E-17 106.8 5.7 111 53-175 144-258 (487)
100 4glp_A Monocyte differentiatio 99.3 3E-12 1E-16 99.6 5.8 120 54-176 92-245 (310)
101 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.3E-16 88.2 9.0 83 53-138 33-117 (174)
102 2ifg_A High affinity nerve gro 99.3 1.2E-11 4.2E-16 97.3 8.8 106 41-169 8-117 (347)
103 4fmz_A Internalin; leucine ric 99.3 3.2E-11 1.1E-15 94.7 10.9 106 53-172 221-328 (347)
104 1h6t_A Internalin B; cell adhe 99.3 3.5E-11 1.2E-15 93.0 10.6 101 53-169 90-192 (291)
105 4ay9_X Follicle-stimulating ho 99.3 5.5E-12 1.9E-16 99.8 5.9 95 41-138 9-116 (350)
106 4fmz_A Internalin; leucine ric 99.3 1.5E-11 5.2E-16 96.6 8.2 103 52-168 242-346 (347)
107 1h6t_A Internalin B; cell adhe 99.3 4.4E-11 1.5E-15 92.4 10.7 99 54-168 113-213 (291)
108 1h6u_A Internalin H; cell adhe 99.2 4.2E-11 1.4E-15 93.2 10.2 75 53-136 85-161 (308)
109 1h6u_A Internalin H; cell adhe 99.2 3.9E-11 1.3E-15 93.4 9.7 101 53-169 107-209 (308)
110 1xeu_A Internalin C; cellular 99.2 6.5E-11 2.2E-15 90.2 10.6 100 53-169 63-164 (263)
111 1dce_A Protein (RAB geranylger 99.2 3.9E-11 1.4E-15 100.9 9.8 102 53-162 463-567 (567)
112 3cvr_A Invasion plasmid antige 99.2 9.6E-12 3.3E-16 104.7 5.5 113 28-168 33-153 (571)
113 1m9s_A Internalin B; cell inva 99.2 8.6E-11 2.9E-15 99.5 11.1 101 53-169 87-189 (605)
114 1m9s_A Internalin B; cell inva 99.2 8.6E-11 3E-15 99.5 10.8 100 53-168 109-210 (605)
115 2ast_B S-phase kinase-associat 99.2 1.3E-12 4.5E-17 102.2 -0.4 116 54-174 119-242 (336)
116 2ifg_A High affinity nerve gro 99.2 4.3E-11 1.5E-15 94.2 8.3 83 53-139 31-116 (347)
117 1xeu_A Internalin C; cellular 99.2 1E-10 3.5E-15 89.2 9.1 101 53-170 41-143 (263)
118 1o6v_A Internalin A; bacterial 99.2 6.8E-11 2.3E-15 96.8 8.2 82 76-169 306-389 (466)
119 1o6v_A Internalin A; bacterial 99.1 1.7E-10 5.8E-15 94.4 9.4 86 75-172 283-370 (466)
120 2ca6_A RAN GTPase-activating p 99.1 9.9E-12 3.4E-16 99.3 1.9 111 53-171 187-319 (386)
121 3bz5_A Internalin-J, INLJ; leu 99.1 2E-10 6.7E-15 94.2 9.5 98 53-169 42-141 (457)
122 3cvr_A Invasion plasmid antige 99.1 4E-11 1.4E-15 100.9 5.3 84 78-176 159-251 (571)
123 1ds9_A Outer arm dynein; leuci 99.1 3.8E-13 1.3E-17 98.3 -6.1 106 53-172 48-157 (198)
124 2ast_B S-phase kinase-associat 99.1 3.9E-12 1.3E-16 99.5 -2.4 80 54-136 71-152 (336)
125 3g06_A SSPH2 (leucine-rich rep 99.1 2.5E-10 8.5E-15 97.0 7.2 82 79-175 221-304 (622)
126 3bz5_A Internalin-J, INLJ; leu 99.1 8.4E-10 2.9E-14 90.5 10.1 82 75-171 166-249 (457)
127 2ca6_A RAN GTPase-activating p 99.1 1.4E-11 4.9E-16 98.4 -0.4 109 54-169 160-288 (386)
128 1jl5_A Outer protein YOPM; leu 99.0 1.8E-10 6.2E-15 94.3 6.0 84 79-176 317-419 (454)
129 3goz_A Leucine-rich repeat-con 99.0 2.9E-11 1E-15 96.0 0.9 117 54-174 52-186 (362)
130 3goz_A Leucine-rich repeat-con 99.0 8E-11 2.7E-15 93.4 2.2 111 53-171 22-154 (362)
131 1ds9_A Outer arm dynein; leuci 99.0 3.5E-12 1.2E-16 93.1 -5.9 103 54-169 19-129 (198)
132 3g06_A SSPH2 (leucine-rich rep 99.0 2.3E-10 7.8E-15 97.2 3.1 92 28-136 12-111 (622)
133 4ay9_X Follicle-stimulating ho 98.9 1.7E-09 5.8E-14 85.5 7.0 103 57-171 13-120 (350)
134 1jl5_A Outer protein YOPM; leu 98.9 4.8E-09 1.6E-13 85.9 8.9 104 53-169 131-251 (454)
135 1z7x_W Ribonuclease inhibitor; 98.8 1.1E-10 3.9E-15 94.8 -3.7 63 102-169 339-412 (461)
136 1z7x_W Ribonuclease inhibitor; 98.8 4.9E-10 1.7E-14 91.0 -0.7 109 53-169 256-384 (461)
137 3un9_A NLR family member X1; l 98.7 3.5E-09 1.2E-13 84.7 1.4 89 79-168 155-252 (372)
138 3un9_A NLR family member X1; l 98.6 9.3E-09 3.2E-13 82.2 0.5 113 53-169 101-225 (372)
139 3ogk_B Coronatine-insensitive 98.5 2.3E-08 8E-13 83.5 0.5 91 75-170 432-528 (592)
140 3sb4_A Hypothetical leucine ri 98.5 1.8E-07 6E-12 73.1 5.3 99 53-161 226-327 (329)
141 3rw6_A Nuclear RNA export fact 98.4 5.9E-08 2E-12 74.2 2.4 79 76-161 167-257 (267)
142 1io0_A Tropomodulin; LRR prote 98.4 4.2E-08 1.5E-12 70.8 0.6 114 52-168 35-164 (185)
143 3ogk_B Coronatine-insensitive 98.2 5.9E-07 2E-11 75.0 3.1 79 53-134 164-251 (592)
144 3rw6_A Nuclear RNA export fact 98.2 1.6E-06 5.3E-11 66.3 4.4 75 53-132 170-257 (267)
145 2p1m_B Transport inhibitor res 98.1 3.6E-07 1.2E-11 76.2 -0.1 109 53-165 105-221 (594)
146 2p1m_B Transport inhibitor res 98.0 4.6E-07 1.6E-11 75.6 -1.5 86 76-168 429-519 (594)
147 3sb4_A Hypothetical leucine ri 98.0 5.5E-06 1.9E-10 64.6 4.6 84 78-169 225-311 (329)
148 2ra8_A Uncharacterized protein 97.9 2.4E-06 8.2E-11 68.0 0.4 62 102-168 250-320 (362)
149 1io0_A Tropomodulin; LRR prote 97.8 3.8E-06 1.3E-10 60.4 1.1 95 74-169 31-137 (185)
150 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.8E-10 57.7 2.9 36 53-90 61-96 (176)
151 3e4g_A ATP synthase subunit S, 97.6 1.3E-05 4.6E-10 57.3 1.1 83 79-166 61-150 (176)
152 4fdw_A Leucine rich hypothetic 97.6 0.00011 3.7E-09 59.1 6.4 103 54-168 249-358 (401)
153 2ra8_A Uncharacterized protein 97.2 0.00017 6E-09 57.2 3.5 106 53-169 172-293 (362)
154 4fdw_A Leucine rich hypothetic 96.9 0.0011 3.7E-08 53.3 4.9 104 53-167 271-382 (401)
155 3rfe_A Platelet glycoprotein I 96.5 0.0044 1.5E-07 41.8 5.3 54 82-138 11-67 (130)
156 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0012 4.1E-08 47.9 1.3 110 53-167 41-169 (197)
157 3rfe_A Platelet glycoprotein I 96.1 0.014 4.9E-07 39.2 6.1 54 57-115 12-68 (130)
158 4gt6_A Cell surface protein; l 95.8 0.033 1.1E-06 44.1 7.7 84 74-166 283-368 (394)
159 4h09_A Hypothetical leucine ri 95.7 0.015 5E-07 45.7 5.4 101 54-165 241-343 (379)
160 4fs7_A Uncharacterized protein 95.7 0.0081 2.8E-07 47.7 3.7 83 74-165 292-376 (394)
161 4gt6_A Cell surface protein; l 95.5 0.024 8.3E-07 44.9 5.9 100 54-167 289-390 (394)
162 1pgv_A TMD-1, tropomodulin TMD 95.3 0.006 2E-07 44.3 1.6 90 75-165 37-136 (197)
163 4fs7_A Uncharacterized protein 94.4 0.064 2.2E-06 42.4 5.7 98 54-165 254-353 (394)
164 4h09_A Hypothetical leucine ri 92.7 0.26 8.9E-06 38.5 6.4 84 74-165 235-320 (379)
165 2lz0_A Uncharacterized protein 47.4 22 0.00076 22.1 3.6 38 98-136 14-53 (100)
166 3s3x_D Psalmotoxin-1; acid-sen 24.0 62 0.0021 15.6 2.1 20 28-49 3-23 (37)
167 3ox7_P MH027; urokinase-type p 23.1 28 0.00095 15.1 0.7 10 39-48 6-15 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.3e-26 Score=180.32 Aligned_cols=154 Identities=31% Similarity=0.501 Sum_probs=136.2
Q ss_pred ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCc--cceEEEcCCC--CcEEEEEccCCcccc--ccCCCcc
Q 041168 1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCL--WDGIKCNEDN--GHVIRLDLTSSCLYG--SINSSSS 74 (177)
Q Consensus 1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~--w~gv~c~~~~--~~l~~L~l~~n~l~~--~~~~~~~ 74 (177)
++||++||+++.++. .+.+|. .+.+||. |.||.|.... ++|+.|++++|.+.+ .+|. .
T Consensus 8 ~~aL~~~k~~~~~~~-----------~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~ 71 (313)
T 1ogq_A 8 KQALLQIKKDLGNPT-----------TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--S 71 (313)
T ss_dssp HHHHHHHHHHTTCCG-----------GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--G
T ss_pred HHHHHHHHHhcCCcc-----------cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--h
Confidence 368999999996543 589997 5678998 9999998644 799999999999998 7888 8
Q ss_pred cccCcCCcEEEccC-CCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 75 LFQLVHLEWLVLSN-NHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 75 l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
+..+++|++|++++ |.+.+. +|..+..+++|++ +++|.+.+.+|..+..+++|++|++++| .+ .+.+|..+
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l---~~~~p~~~ 145 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN--AL---SGTLPPSI 145 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS--EE---ESCCCGGG
T ss_pred HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC--cc---CCcCChHH
Confidence 99999999999995 999877 8999999999999 9999999889999999999999999999 55 56788889
Q ss_pred hcCCCCCEEEeecccCCCCCCcccc
Q 041168 152 EKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
..+++|++|++++|.+++.+|..++
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGG
T ss_pred hcCCCCCeEECcCCcccCcCCHHHh
Confidence 9999999999999999988888765
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.4e-23 Score=174.55 Aligned_cols=161 Identities=19% Similarity=0.287 Sum_probs=124.3
Q ss_pred ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc---ceEEEcCCCCcEEEEEccCCccccccCCCccccc
Q 041168 1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLW---DGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQ 77 (177)
Q Consensus 1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w---~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~ 77 (177)
++||.++|.++.++. |.-+--.++...+|+ .+.++|.| .||.|+.. ++|+.|+|+++.+.|.+|+ .+.+
T Consensus 32 ~~aL~~~~~~~~~~~--w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~ 103 (636)
T 4eco_A 32 YLALKEIWDALNGKN--WSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQ 103 (636)
T ss_dssp HHHHHHHHHHTTGGG--CCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGG
T ss_pred HHHHHHHHHHcCCCC--cccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhc
Confidence 369999999998765 322222234456898 67899999 99999765 7999999999999999998 9999
Q ss_pred CcCCcEEEccCCCC------------------------------------------------------------------
Q 041168 78 LVHLEWLVLSNNHF------------------------------------------------------------------ 91 (177)
Q Consensus 78 l~~L~~L~Ls~n~l------------------------------------------------------------------ 91 (177)
+++|++|+|++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999998854
Q ss_pred ------------CCCCCCccccCCccccc--cccccCCCC-----------------CChhhh--CCCCCCEEeCCCCcC
Q 041168 92 ------------NFSEIPSEIKNLSRLTA--LSNPSFFGQ-----------------IPAELL--ELSDLESLDLSFNNF 138 (177)
Q Consensus 92 ------------~~~~~p~~~~~l~~L~~--ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~~ 138 (177)
+ . +|..++.+++|++ |++|.+.+. +|..++ .+++|++|++++|
T Consensus 184 ~~l~l~~~~n~l~-~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-- 259 (636)
T 4eco_A 184 KDTQIGQLSNNIT-F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-- 259 (636)
T ss_dssp CTTTTTCCSCEEE-E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC--
T ss_pred hhhhhccccCCCc-c-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC--
Confidence 1 1 5667778888888 888888864 788877 8888888888888
Q ss_pred CcccCCCchhHHhhcCCCCCEEEeeccc-CCC-CCCcccc
Q 041168 139 HLKLQGPSLANLAEKLANLKVLHLGQVN-TAS-TVPYALA 176 (177)
Q Consensus 139 ~l~~~~~~~p~~~~~l~~L~~L~Ls~N~-l~g-~~p~~l~ 176 (177)
.+ .+.+|..+.++++|++|++++|+ ++| .+|..++
T Consensus 260 ~l---~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~ 296 (636)
T 4eco_A 260 PN---LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296 (636)
T ss_dssp TT---CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cC---CccChHHHhcCCCCCEEECcCCCCCccccchHHHH
Confidence 45 56777778888888888888887 777 6776553
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=3.7e-22 Score=173.02 Aligned_cols=117 Identities=29% Similarity=0.389 Sum_probs=90.3
Q ss_pred ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceEEEcCCCCcEEEEEccCCccccc---cC-------
Q 041168 1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQEEENRDCCLWDGIKCNEDNGHVIRLDLTSSCLYGS---IN------- 70 (177)
Q Consensus 1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~C~w~gv~c~~~~~~l~~L~l~~n~l~~~---~~------- 70 (177)
|+||++||+++.++. ++.+|. .+.+||.|.||.|+ .++|+.|+++++.+.+. ++
T Consensus 14 ~~all~~k~~~~~~~-----------~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 14 IHQLISFKDVLPDKN-----------LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp HHHHHHHHTTCSCTT-----------SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred HHHHHHHHhhCCCcc-----------cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccC
Confidence 479999999998543 589998 66799999999998 47999999999988875 43
Q ss_pred ----------------CCcccccCcCCcEEEccCCCCCCCCCCc--cccCCccccc--cccccCCCCCChhh-hCCCCCC
Q 041168 71 ----------------SSSSLFQLVHLEWLVLSNNHFNFSEIPS--EIKNLSRLTA--LSNPSFFGQIPAEL-LELSDLE 129 (177)
Q Consensus 71 ----------------~~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~--ls~n~l~~~~p~~~-~~l~~L~ 129 (177)
. .+..+++|++|+|++|.+++. +|. .++.+++|++ +++|.+.+.+|..+ ..+++|+
T Consensus 78 ~L~~l~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp TCCEEECTTSCEEECCC--CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cccccCCcCCCcCCCch--hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 3 566677777788887777765 666 6777777777 77777776666554 5677777
Q ss_pred EEeCCCC
Q 041168 130 SLDLSFN 136 (177)
Q Consensus 130 ~L~Ls~N 136 (177)
+|++++|
T Consensus 155 ~L~Ls~n 161 (768)
T 3rgz_A 155 VLDLSAN 161 (768)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 7777777
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=8.1e-21 Score=166.41 Aligned_cols=156 Identities=20% Similarity=0.236 Sum_probs=117.2
Q ss_pred ChHHHHHhhhCccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCcc------------ceEEEcCCCCcEEEEEccCCcccc
Q 041168 1 RSALLQFKQSLTVVQCSFDDYPSAYPKVA-SWSQEEENRDCCLW------------DGIKCNEDNGHVIRLDLTSSCLYG 67 (177)
Q Consensus 1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~-~W~~~~~~~~~C~w------------~gv~c~~~~~~l~~L~l~~n~l~~ 67 (177)
++||++||.++.++. | ... +|. .....+|.| .||.|+. .++|+.|+|+++.+.|
T Consensus 271 ~~ALl~~k~~l~~~~--W--------~~~~~~~--~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 271 YKALKAIWEALDGKN--W--------RYYSGTI--NNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp HHHHHHHHHHTTGGG--C--------CCCCSSC--SSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred HHHHHHHHHHcCCCC--C--------CcCCCcc--cccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 369999999996542 2 111 121 012233999 9999986 4799999999999999
Q ss_pred ccCCCcccccCcCCcEEEc-cCCCCCCC----------------------------------------------------
Q 041168 68 SINSSSSLFQLVHLEWLVL-SNNHFNFS---------------------------------------------------- 94 (177)
Q Consensus 68 ~~~~~~~l~~l~~L~~L~L-s~n~l~~~---------------------------------------------------- 94 (177)
.+|+ .+.++++|++|+| ++|.+.+.
T Consensus 338 ~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 338 RVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred cCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9998 9999999999999 66643221
Q ss_pred -----------------------CCCccccCCccccc--cccccCCC-----------------CCChhhh--CCCCCCE
Q 041168 95 -----------------------EIPSEIKNLSRLTA--LSNPSFFG-----------------QIPAELL--ELSDLES 130 (177)
Q Consensus 95 -----------------------~~p~~~~~l~~L~~--ls~n~l~~-----------------~~p~~~~--~l~~L~~ 130 (177)
.+|..++.+++|++ |++|.+.+ .+|..++ .+++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 05667778888888 88888887 2777776 8888888
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeeccc-CCC-CCCcccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVN-TAS-TVPYALA 176 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~-l~g-~~p~~l~ 176 (177)
|+|++| .+ .+.+|..+..+++|++|+|++|+ ++| .+|..++
T Consensus 496 L~Ls~N--~l---~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~ 538 (876)
T 4ecn_A 496 VELYNC--PN---MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538 (876)
T ss_dssp EEEESC--TT---CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred EECcCC--CC---CccChHHHhCCCCCCEEECcCCCCcccccchHHHH
Confidence 888888 45 57778888888888888888887 777 6776543
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=3.6e-21 Score=151.77 Aligned_cols=121 Identities=18% Similarity=0.306 Sum_probs=90.8
Q ss_pred ChHHHHHhhhCccCCCCCCCCCCCCCCCCCCCCC-CCCCCCCccceEEEcC--------CCCcEEEEEccCCccccccCC
Q 041168 1 RSALLQFKQSLTVVQCSFDDYPSAYPKVASWSQE-EENRDCCLWDGIKCNE--------DNGHVIRLDLTSSCLYGSINS 71 (177)
Q Consensus 1 ~~~l~~~k~~~~~~~~~~~~~~~~~~~l~~W~~~-~~~~~~C~w~gv~c~~--------~~~~l~~L~l~~n~l~~~~~~ 71 (177)
++||++||..+..++.. .+..|... ....++|.|.|+.|.. ...+|+.|++++|.++ .+|.
T Consensus 29 ~~aLl~~k~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 29 HDVLSQWQRHYNADRNR---------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp HHHHHHHHHHHHHCCTT---------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred HHHHHHHHHhccCCchh---------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 36899999998655443 46788310 1457899999999942 2367888888888887 5676
Q ss_pred CcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168 72 SSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN 136 (177)
Q Consensus 72 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 136 (177)
.+..+++|++|+|++|.++ . +|..+..+++|++ +++|.+. .+|..+..+++|++|++++|
T Consensus 99 --~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 99 --QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp --CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred --hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 6777888888888888887 5 7777788888888 7888777 67777777777777777776
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.8e-18 Score=129.79 Aligned_cols=131 Identities=21% Similarity=0.191 Sum_probs=108.5
Q ss_pred CCCCCCccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccc
Q 041168 36 ENRDCCLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRL 106 (177)
Q Consensus 36 ~~~~~C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L 106 (177)
.....|.|.+|.|... ..+++.|++++|.+++..+. .+..+++|++|+|++|.+... .+..|..+++|
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L 90 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGAL-PVGVFDSLTQL 90 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH--HhhCccCCcEEECCCCCCCCc-ChhhcccCCCc
Confidence 4568899999999642 25799999999999987777 889999999999999999854 34567889999
Q ss_pred cc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 107 TA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 107 ~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
++ |++|++.+..+..+..+++|++|+|++| .+ ..+|..+..+++|++|+|++|+|++..+..+
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N--~l----~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN--KL----TELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CC----CSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCC--cc----cccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 99 9999998666667889999999999999 45 3578888899999999999999986443333
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.9e-17 Score=121.05 Aligned_cols=124 Identities=25% Similarity=0.257 Sum_probs=95.3
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.|.+|.|... ..++++|++++|.+++..+. .+..+++|++|++++|.++.. .+..+..+++|++ +
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEEC
Confidence 78999999542 24689999999999865555 678889999999999999854 4455788888988 8
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
++|++.+..+..+..+++|++|++++| .+ ....+..+..+++|++|++++|.+++..+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTN--QL---QSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCC--cC---cccCHhHhccCCcCCEEECCCCccceeCH
Confidence 889888665556788889999999888 44 44444456778888888888888875443
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2e-17 Score=123.41 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=105.2
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.|..|.|... ..+++.|++++|.+++..+. .+..+++|++|+|++|.++.. .|..|..+++|++ |
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVL 87 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT--SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEEC
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEEC
Confidence 68888999532 24789999999999976666 788899999999999999965 6888999999999 9
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
++|.+....+..+..+++|++|+|++| .+ ....|..|..+++|++|+|++|.|++..+..+
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNAN--KI---NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCC--CC---CEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 999998555556788999999999999 55 55667788899999999999999987555444
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.4e-17 Score=121.79 Aligned_cols=125 Identities=21% Similarity=0.202 Sum_probs=107.5
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.|..+.|... ..++++|++++|.+++..+. ..+..+++|++|+|++|.+++. .|..|..+++|++ |
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQL 85 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEEC
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc-cccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEEC
Confidence 68888888532 24889999999999865543 0388999999999999999976 7889999999999 9
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
++|++.+..+..+..+++|++|+|++| .+ .+..|..+..+++|++|+|++|++.+..+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDN--QI---SCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSS--CC---CEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCC--cC---CeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999888888999999999999999 55 56678889999999999999999998765
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=3.6e-17 Score=117.68 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=103.8
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.|.++.|... ..+++.|++++|.+++..+. .+..+++|++|++++|.++.. .+..+..+++|++ +
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYL 83 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH--HhcCcccccEEECCCCcceEe-ChhHccCCCccCEEEC
Confidence 78999999542 25799999999999976555 678999999999999999964 4556789999999 9
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
++|.+.+..+..+..+++|++|++++| .+ ....+..+..+++|++|++++|++.+..|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTN--QL---KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCC--cc---eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999776667899999999999999 55 44444456889999999999999998765
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=121.21 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=93.0
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.|..+.|... ...++.|++++|.+++..+.. .+..+++|++|+|++|.+++. .+..|..+++|++ |
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATG-IFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILL 88 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCC-CGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchh-hhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEEC
Confidence 57777777432 135678888888887654420 467788888888888888754 4557788888888 8
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
++|.+.+..+..+..+++|++|+|++| .+ .+..|..+..+++|++|+|++|.+++..|..++
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSN--RI---TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTS--CC---CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCC--cC---CeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 888887666666788888888888888 44 455566777788888888888888765565543
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=4.1e-17 Score=137.10 Aligned_cols=148 Identities=22% Similarity=0.178 Sum_probs=98.0
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCcc----ceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEE
Q 041168 20 DYPSAYPKVASWSQE-EENRDCCLW----DGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLV 85 (177)
Q Consensus 20 ~~~~~~~~l~~W~~~-~~~~~~C~w----~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~ 85 (177)
||..-.++++.|... +...++|.+ ..|.|... ...+++|+|++|.|++..+. .|.++++|++|+
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~ 82 (635)
T 4g8a_A 5 DYKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLD 82 (635)
T ss_dssp --------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEE
T ss_pred ccCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEE
Confidence 444444556666521 112345644 24778532 24789999999999976666 799999999999
Q ss_pred ccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEee
Q 041168 86 LSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLG 163 (177)
Q Consensus 86 Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls 163 (177)
|++|.|+.. .+..|..+++|++ |++|++.+..+..|..+++|++|++++| .+ ....+..|+.+++|++|+|+
T Consensus 83 Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N--~l---~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 83 LSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET--NL---ASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp CTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS--CC---CCSTTCCCTTCTTCCEEECC
T ss_pred CCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC--cC---CCCChhhhhcCcccCeeccc
Confidence 999999864 4567899999999 9999998666667889999999999999 44 33334457777788888888
Q ss_pred cccCCC-CCCccc
Q 041168 164 QVNTAS-TVPYAL 175 (177)
Q Consensus 164 ~N~l~g-~~p~~l 175 (177)
+|.+++ .+|..+
T Consensus 157 ~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 157 HNLIQSFKLPEYF 169 (635)
T ss_dssp SSCCCCCCCCGGG
T ss_pred cCccccCCCchhh
Confidence 887764 244443
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=6.2e-17 Score=122.65 Aligned_cols=111 Identities=23% Similarity=0.201 Sum_probs=50.5
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
++++|++++|.+++..+. .+..+++|++|++++|.++.. .+..+..+++|++ +++|++.+..+..+..+++|++|
T Consensus 60 ~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCcCCccCHh--HhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence 344444444444433333 344444444444444444432 2233444444444 44454443333334445555555
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
+|++| .+ ....+..+..+++|++|+|++|++++..+
T Consensus 137 ~Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 137 RLNTN--QL---QSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp ECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECcCC--cC---CccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 55555 23 22223345556666666666666654333
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.6e-16 Score=120.41 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=67.9
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
..++.|++++|.+++..+. .+..+++|++|++++|.++.. .+..|..+++|++ +++|.+.+..+..+..+++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 3577888888888765555 677777888888887777743 2334566777777 7777776544445566666666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++| .+ ....+..+..+++|++|+|++|.+++
T Consensus 114 L~l~~n--~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 114 LRLDRN--QL---KSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp EECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EECCCC--cc---CeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 666666 33 23333344555555555555555543
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=1.6e-16 Score=125.13 Aligned_cols=115 Identities=21% Similarity=0.194 Sum_probs=99.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.++ .+|. .+..+++|++|++++|.+++ +|..+..+++|++ +++|++.+.+|..++.+++|++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPA--SIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp TTCCEEEEEEECCC-CCCG--GGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCCCEEECcCCCcC-cchH--hhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 57888888888887 6777 78888999999999999884 7778888999998 8898888888888999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccccC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALAN 177 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 177 (177)
|++++| .+ .+.+|..+..+++|++|+|++|++.+.+|+.+++
T Consensus 258 L~L~~n--~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 258 LILKDC--SN---LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp EECTTC--TT---CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred EECCCC--Cc---hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 999998 45 6788888999999999999999999999998763
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=113.49 Aligned_cols=121 Identities=22% Similarity=0.248 Sum_probs=102.7
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.+..+.|... ..++++|++++|.++ .+|. .+..+++|++|+|++|.++.. .+..|..+++|++ |
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~--~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPK--ELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLIL 85 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCG--GGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHH--HhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEEC
Confidence 56777888532 257999999999998 5777 899999999999999999975 6678999999999 9
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST 170 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 170 (177)
++|.+.+..|..|..+++|++|+|++| .+ ....+..|..+++|+.|+|++|++...
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGN--DI---SVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSS--CC---CBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCC--CC---CeeChhhhhcCccccEEEeCCCCeecC
Confidence 999999888888999999999999999 45 433444688999999999999998653
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=116.53 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=100.8
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
..+++.|++++|.+++..+. .+..+++|++|+|++|.+++. .+..|..+++|++ |++|++.+..|..+..+++|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEG--AFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred CCCCCEEECCCCcCCEECHH--HhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 36899999999999987777 799999999999999999975 5667999999999 999999988889999999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
+|+|++| .+ .+..|..+..+++|++|+|++|++.+..+
T Consensus 133 ~L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 133 LLSLYDN--QI---TTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp EEECTTS--CC---CCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EEECCCC--cC---CEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999 55 56668889999999999999999986544
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=6.2e-17 Score=126.61 Aligned_cols=116 Identities=16% Similarity=0.308 Sum_probs=102.4
Q ss_pred CcEEEEEccC-CccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTS-SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.++++|++++ |.+.+.+|. .+..+++|++|++++|.+++. +|..+..+++|++ +++|.+.+.+|..+..+++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred CCCCeeeCCCCCcccccCCh--hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 5789999995 889888888 899999999999999999876 8889999999999 999999988999999999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCC-CCCEEEeecccCCCCCCcccc
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLA-NLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
+|++++| .+ .+.+|..+..++ +|++|++++|.+++.+|..++
T Consensus 153 ~L~L~~N--~l---~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 153 GITFDGN--RI---SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp EEECCSS--CC---EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred eEECcCC--cc---cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 9999999 55 557788888887 899999999999888887764
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.2e-15 Score=115.47 Aligned_cols=108 Identities=25% Similarity=0.301 Sum_probs=54.7
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
+++.|++++|.+.+..+. .+..+++|++|+|++|.+++. .+..+..+++|++ +++|++.+..+..+..+++|++|
T Consensus 36 ~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCcCccCHh--HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 455555555555544444 455555555555555555543 3444555555555 55555554444444555555555
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
+|++| .+ ....+..+..+++|++|+|++|.+++
T Consensus 113 ~L~~N--~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 113 YLGGN--QL---KSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp ECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EcCCC--cC---CCcChhHhccCCcccEEECcCCcCCc
Confidence 55555 23 22222334455555555555555554
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=6.4e-16 Score=133.92 Aligned_cols=115 Identities=30% Similarity=0.318 Sum_probs=62.7
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
+++.|++++|.+.+.+|. .+..+++|++|++++|.+++. +|..+..+++|++ +++|++.+.+|..++.+++|++|
T Consensus 443 ~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp TCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 344444444444444444 444555555555555555544 5555555555555 55555555555555555555555
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
++++| .+ .+.+|..+..+++|++|++++|+++|.+|..++
T Consensus 520 ~L~~N--~l---~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 520 KLSNN--SF---SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp ECCSS--CC---EEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred ECCCC--cc---cCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 55555 33 345555666666666666666666666665543
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=1.1e-15 Score=124.27 Aligned_cols=128 Identities=23% Similarity=0.283 Sum_probs=96.3
Q ss_pred CCCccce--EEEcCC--------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCC-CccccCCcccc
Q 041168 39 DCCLWDG--IKCNED--------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEI-PSEIKNLSRLT 107 (177)
Q Consensus 39 ~~C~w~g--v~c~~~--------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~ 107 (177)
..|.|.+ |.|... ..++++|++++|.+++..+. .+..+++|++|++++|.+.+. + +..|..+++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~ 82 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLI 82 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCC
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccce-ECcccccccccCC
Confidence 4555544 777532 25789999999999877777 788899999999999988754 4 46688888898
Q ss_pred c--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHH--hhcCCCCCEEEeecccCCCCCCcc
Q 041168 108 A--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANL--AEKLANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 108 ~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~--~~~l~~L~~L~Ls~N~l~g~~p~~ 174 (177)
+ +++|.+.+..|..++.+++|++|++++| .+ .+..+.. +..+++|++|+|++|.+++..|..
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQC--NL---DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTS--CC---BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCC--CC---CccccCcccccCcccCCEEECCCCccCccCccc
Confidence 8 8888888777888888888888888888 44 3434443 667777777777777777665654
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3e-15 Score=114.71 Aligned_cols=112 Identities=28% Similarity=0.259 Sum_probs=62.6
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+..+++|++|++++|.+++. .+..+..+++|++ +++|.+.+..+..+..+++|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNG--VFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCccChh--HhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 4566666666666654444 455666666666666666643 3344555666666 6666665444444556666666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++| .+ .+..+..+..+++|++|++++|.+++..|
T Consensus 162 L~l~~n--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 162 LDLSYN--QL---QSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp EECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCC--Cc---CccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 666666 33 33333344555566666666666555433
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=1.1e-15 Score=127.14 Aligned_cols=125 Identities=24% Similarity=0.294 Sum_probs=97.2
Q ss_pred CCccceEEEcCC-----------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc
Q 041168 40 CCLWDGIKCNED-----------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA 108 (177)
Q Consensus 40 ~C~w~gv~c~~~-----------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~ 108 (177)
.|.|.|+ |+.. ..++++|++++|.+++..+. .+..+++|++|++++|.+++. .|..|..+++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 78 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEH 78 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCE
Confidence 4788887 6422 24799999999999877777 889999999999999999865 6678999999999
Q ss_pred --cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 109 --LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 109 --ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
+++|.+.+..|..++.+++|++|++++|.+.- ...|..+..+++|++|++++|.+.+.+|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT----LGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS----SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccc----cchhhhhhccCCccEEECCCCccccccC
Confidence 99999987766679999999999999994321 1345556777777777777776544454
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=2e-15 Score=127.03 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=60.6
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+.++++|++|++++|.+++. .|..|..+++|++ +++|.+.+..|..|+.+++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 3455666666655554444 455555555555555555543 3444555555555 5555555444555555555555
Q ss_pred EeCCCCcC----------------------CcccCCC-chhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 131 LDLSFNNF----------------------HLKLQGP-SLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 131 L~Ls~N~~----------------------~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
|++++|.+ .+ .. .+|..++.+++|++|++++|.+++..|.
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFI---HSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCC---CCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcc---cceechHhHhhcCCCCEEEccCCcceecChh
Confidence 55555522 12 11 3455556666666666666665554443
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=2.3e-15 Score=112.14 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=96.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++..+. .|..+++|++|+|++|.++.. .+..|..+++|++ |++|++.+..|..|..+++|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPD--AFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCCEEECCSSCCCEECTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCCcCHH--HhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 6899999999999987788 899999999999999999953 3455788999999 9999999888889999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|+|++| .+ ....+..+..+++|++|+|++|++..
T Consensus 133 L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 133 LSLYDN--KL---QTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCC--cC---CEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999 55 45555678899999999999999864
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=5.6e-15 Score=108.70 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=93.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+..+++|++|++++|.++.. .+..+..+++|++ +++|++.+..+..+..+++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNG--VFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCccCccChh--hcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 6899999999999965555 678899999999999999964 4456789999999 9999998766667899999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++| .+ .+..+..+..+++|++|++++|.+.+..|
T Consensus 129 L~l~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 129 LRLYQN--QL---KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp EECCSS--CC---SCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred EECCCC--cc---ceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 999999 55 44445557889999999999998876655
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.4e-15 Score=103.72 Aligned_cols=110 Identities=25% Similarity=0.243 Sum_probs=94.7
Q ss_pred CcEEEEEccCCccc-cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLY-GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
++++.|++++|.++ +.+|. .+..+++|++|++++|.+++ + ..+..+++|++ +++|.+.+.+|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 57899999999998 67887 78999999999999999984 5 67889999999 999999977888888899999
Q ss_pred EEeCCCCcCCcccCCCc-hhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 130 SLDLSFNNFHLKLQGPS-LANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~-~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
+|++++| .+ .+. .+..+..+++|++|++++|.+++..+
T Consensus 92 ~L~ls~N--~i---~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 92 HLNLSGN--KI---KDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EEECTTS--CC---CSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EEECCCC--cC---CChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 9999999 45 332 34778999999999999999986543
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=8.9e-15 Score=109.53 Aligned_cols=111 Identities=19% Similarity=0.133 Sum_probs=95.8
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+|+.|++++|.+....+. .+..+++|++|+|++|.++.. .+..|..+++|++ +++|++. .+|..+..+++|++
T Consensus 64 ~~L~~L~L~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139 (229)
T ss_dssp TTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred cCCcEEECCCCCCCCcChh--hcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence 6899999999999865555 678999999999999999964 4566789999999 9999998 78999999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|+|++| .+ ....+..+..+++|+.|+|++|++.+..+
T Consensus 140 L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 140 LALDQN--QL---KSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EECCSS--CC---CCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred EECCCC--cC---CccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999 55 44444668899999999999999987654
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=117.65 Aligned_cols=124 Identities=27% Similarity=0.325 Sum_probs=96.1
Q ss_pred CCCCCCccceEEEcCC-----------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCc
Q 041168 36 ENRDCCLWDGIKCNED-----------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLS 104 (177)
Q Consensus 36 ~~~~~C~w~gv~c~~~-----------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~ 104 (177)
.....|.|.++ |+.. ..++++|++++|.+++..+. .+..+++|++|++++|.+++. .+..|..++
T Consensus 25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 100 (353)
T 2z80_A 25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLG 100 (353)
T ss_dssp --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCT
T ss_pred ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCC
Confidence 34567899988 6421 24799999999999976666 789999999999999999865 567799999
Q ss_pred cccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeeccc-CCC
Q 041168 105 RLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVN-TAS 169 (177)
Q Consensus 105 ~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~-l~g 169 (177)
+|++ +++|++.+..+..+..+++|++|++++|+ + . .+|. .+..+++|++|++++|. +.+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l---~-~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP--Y---K-TLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC--C---S-SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC--C---c-ccCchhhhccCCCCcEEECCCCccccc
Confidence 9999 99999985444458899999999999994 4 2 3443 56778888888888874 443
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.1e-14 Score=111.55 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=97.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+..+++|++|++++|.+++. .+..+..+++|++ +++|++.+..+..+..+++|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCccCHH--HhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 6899999999999976666 688999999999999999965 5566789999999 9999999777777899999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++| .+ .+..+..+..+++|++|++++|++.+..|
T Consensus 186 L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 186 LRLYQN--QL---KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp EECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCC--cC---CccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 999999 55 55566668899999999999999987766
No 31
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=4.5e-15 Score=118.13 Aligned_cols=121 Identities=26% Similarity=0.256 Sum_probs=84.9
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCCCCCCCCCCccccCCccccc--
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA-- 108 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~-- 108 (177)
|.+..+.|... ...++.|+|++|.+++..+. .+. .+++|++|+|++|.++.. .+..|..+++|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLD 94 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEE
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh--hhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEE
Confidence 67777888432 24577888888888865555 555 788888888888888754 4456777888888
Q ss_pred cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 109 LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 109 ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++|++....+..|..+++|++|+|++| .+ ....+..|..+++|++|+|++|.|++
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i---~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNN--HI---VVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS--CC---CEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCC--cc---cEECHHHhCCcccCCEEECCCCcCCe
Confidence 7888877655556777777888888777 34 33345566667777777777777664
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=8.2e-15 Score=104.33 Aligned_cols=104 Identities=30% Similarity=0.344 Sum_probs=49.5
Q ss_pred cEEEEEccCCccc-cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 54 HVIRLDLTSSCLY-GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 54 ~l~~L~l~~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+++.|++++|.++ +.+|. .+..+++|++|++++|.++. + ..+..+++|++ +++|.+.+.+|..+..+++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4555555555554 33444 44445555555555555542 2 34444555555 5555554444444444555555
Q ss_pred EeCCCCcCCcccCCCchh--HHhhcCCCCCEEEeecccCC
Q 041168 131 LDLSFNNFHLKLQGPSLA--NLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p--~~~~~l~~L~~L~Ls~N~l~ 168 (177)
|++++| .+ .. ++ ..+..+++|++|++++|.++
T Consensus 100 L~Ls~N--~l---~~-~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 100 LNLSGN--KL---KD-ISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp EECBSS--SC---CS-SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred EeccCC--cc---Cc-chhHHHHhcCCCCCEEEeeCCcCc
Confidence 555555 22 11 11 34444555555555555544
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=2.6e-14 Score=110.66 Aligned_cols=113 Identities=27% Similarity=0.217 Sum_probs=81.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+++++|++++|.++ .+|. .+..+++|++|++++|+++.. .+..|..+++|++ +++|++.+..+..+..+++|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~--~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPL--LGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TTCCEEECCSSCCS-SCCC--CTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCEEECCCCcCC-cCch--hhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 56777777777776 4565 667778888888888888754 4466777888888 8888887655556677888888
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
|+|++| .+ ....+..+..+++|++|+|++|+++ .+|..+
T Consensus 153 L~L~~N--~l---~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 153 LSLANN--NL---TELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp EECTTS--CC---SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred EECCCC--cC---CccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 888888 44 3333344677888888888888887 466654
No 34
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.6e-14 Score=103.51 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=84.2
Q ss_pred EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168 56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL 133 (177)
Q Consensus 56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L 133 (177)
+.+++++|.++. +|. .+ .+.|++|+|++|.+++. .|..|..+++|++ |++|++.+..+..|..+++|++|+|
T Consensus 12 ~~l~~s~n~l~~-ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 367888888874 665 44 37889999999999975 6778889999999 9999998666666789999999999
Q ss_pred CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCC
Q 041168 134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTV 171 (177)
Q Consensus 134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~ 171 (177)
++| .+ ....+..|..+++|++|+|++|++.+..
T Consensus 86 ~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDN--QL---KSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSS--CC---CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCC--cc---CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999 45 4444556888999999999999988654
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=5.3e-15 Score=124.21 Aligned_cols=116 Identities=21% Similarity=0.190 Sum_probs=99.8
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|+|++|.|++..+. .|.++++|++|+|++|+++.. .+..|..+++|++ +++|++.+..+..|+.+++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred CCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 6899999999999976666 799999999999999999953 3467899999999 9999999766667999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
|++++|.+. ....|..+..+++|++|++++|++++..|..+
T Consensus 153 L~Ls~N~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 153 LNVAHNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp EECCSSCCC----CCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred eccccCccc----cCCCchhhccchhhhhhcccCccccccccccc
Confidence 999999543 23567889999999999999999997666654
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=9.6e-15 Score=112.28 Aligned_cols=109 Identities=27% Similarity=0.201 Sum_probs=66.8
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCC-CCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH-FNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.++++|++++|.+++..+. .+..+++|++|++++|. +... .+..+..+++|++ +++|.+.+..|..+..+++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEECCCCccceeCHh--hcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 4566666666666654455 56666666666666665 5533 3555666666666 666666655555666666677
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
+|++++| .+ ....+..+..+++|++|++++|.+++
T Consensus 133 ~L~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 133 YLYLQDN--AL---QALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp EEECCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred EEECCCC--cc---cccCHhHhccCCCccEEECCCCcccc
Confidence 7777666 33 33333446666777777777777664
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=1.4e-14 Score=110.80 Aligned_cols=114 Identities=20% Similarity=0.192 Sum_probs=73.9
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+..+++|++|++++|.+++. .+..+..+++|++ +++|.+.+..+..+..+++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred cCCcEEECCCCcCCccCHH--HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 4566666666666654444 566666677777777766643 4455666667776 6667666544445667777777
Q ss_pred EeCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCCCCCCcc
Q 041168 131 LDLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~ 174 (177)
|++++|. + .. .+|..+..+++|++|++++|++++..+..
T Consensus 129 L~l~~n~--l---~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 129 LNVAHNL--I---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp EECCSSC--C---CCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred EECcCCc--c---ceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 7777773 3 22 35777778888888888888877644433
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=9.7e-15 Score=119.70 Aligned_cols=123 Identities=24% Similarity=0.211 Sum_probs=85.3
Q ss_pred cceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--ccc
Q 041168 43 WDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSN 111 (177)
Q Consensus 43 w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~ 111 (177)
|..|.|... ..+++.|++++|.+++..+. .|..+++|++|+|++|.+++. .|..|..+++|++ |++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCC
Confidence 556777432 24678888888888876666 778888888888888888765 5777888888888 888
Q ss_pred ccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 112 PSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 112 n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
|++....+..|..+++|++|+|++| .+ ....+..+..+++|++|++++|.+.+..|.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n--~i---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISEN--KI---VILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTS--CC---CEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred CcCCccCcccccCCCCCCEEECCCC--cc---ccCChhHccccccCCEEECCCCccceeChh
Confidence 8877554455677888888888887 34 334455566666666666666666544333
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=7.6e-15 Score=107.09 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=93.2
Q ss_pred EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCc-cccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168 56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPS-EIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD 132 (177)
Q Consensus 56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~ 132 (177)
+++++++|.++ .+|. .+. ..+++|++++|.+++. .+. .+..+++|++ |++|.+.+..|..|..+++|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~--~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCcc--CCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 58999999997 5676 554 3899999999999854 333 4889999999 999999988899999999999999
Q ss_pred CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
|++| .+ .+..+..|..+++|++|+|++|+|++..|..++
T Consensus 85 Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 85 LGEN--KI---KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp CCSC--CC---CEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred CCCC--cC---CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 9999 55 555566688999999999999999987777654
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=1.2e-14 Score=122.34 Aligned_cols=111 Identities=22% Similarity=0.171 Sum_probs=85.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~L~ 129 (177)
.++++|++++|.+++..|. .+.++++|++|++++|.++.. .+..++.+++|++ +++|.+.+ .+|..++.+++|+
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPG--SFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TTCCEEECTTCCCCCCCTT--SSTTCTTCCEEECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred hhcCEeECCCCcccccChh--hcCCcccCCEEEccCCccccc-cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 5677788888877766666 777788888888888888754 4466888888888 88888875 5789999999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCC----CEEEeecccCCCCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANL----KVLHLGQVNTASTV 171 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L----~~L~Ls~N~l~g~~ 171 (177)
+|++++| .+ .+..+..+..+++| .+|++++|.+++..
T Consensus 157 ~L~Ls~n--~l---~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 157 HVDLSYN--YI---QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp EEECCSS--CC---CEECTTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred EEEccCC--cc---eecChhhhhhhhccccccceeeccCCCcceeC
Confidence 9999999 45 44455556655555 48999999998533
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=3.1e-14 Score=108.81 Aligned_cols=108 Identities=25% Similarity=0.208 Sum_probs=47.7
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
++++|++++|.+.+..+. .+..+++|++|++++|.++.. .+..|..+++|++ +++|.+.+..+..+..+++|++|
T Consensus 86 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIG--VFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp TCCEEECCSSCCCCCCTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCcCCHh--HcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 344444444444432222 334444444444444444432 2333444444444 44444443333334445555555
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
++++| .+ ....+..+..+++|++|+|++|++++
T Consensus 163 ~L~~n--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 163 RLYNN--QL---KRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp ECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EecCC--cC---cEeChhHhccCCCcCEEECCCCcCCc
Confidence 55555 22 22222334555555555555555553
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=9.8e-15 Score=118.75 Aligned_cols=112 Identities=22% Similarity=0.255 Sum_probs=83.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++. .|..+..+++|++ +++|++.+..|..+..+++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDN--AFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcccccChh--HhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 5677777777777766666 677777888888888887754 5667777788887 7888887666777788888888
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++| .+ ....+..+..+++|++|+|++|++++..|
T Consensus 376 L~L~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 376 LALDTN--QL---KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSS--CC---SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCC--cc---ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 888888 44 34334456778888888888888888776
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.55 E-value=8e-15 Score=113.73 Aligned_cols=114 Identities=25% Similarity=0.248 Sum_probs=57.9
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCC-CCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNF-SEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
++++|++++|.+.+..+. .+..+++|++|++++|.+++ . .|..+..+++|++ +++|.+.+..|..+..+++|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCCEEECTTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCCccchh--hcccCcCCCEEECCCCcccccc-chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 344444444444433333 34444555555555555443 2 3444555555555 5555555444555555556666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
|++++| .+ ....+..+..+++|++|++++|++++..|..+
T Consensus 204 L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 204 LNMSHN--NF---FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp EECTTS--CC---SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred EECCCC--cc---CccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 666655 23 22223345556666666666666665555443
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.55 E-value=2.4e-14 Score=110.03 Aligned_cols=115 Identities=22% Similarity=0.188 Sum_probs=71.6
Q ss_pred CcEEEEEccCCc-cccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSC-LYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.++++|++++|. +....+. .+..+++|++|++++|.+++. .+..+..+++|++ +++|.+.+..+..+..+++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCEEeCCCCCCccccCHH--HhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 456777777775 5544455 566667777777777777654 4556666677776 667776654445566677777
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
+|++++| .+ ....+..+..+++|++|++++|.+++..|..+
T Consensus 157 ~L~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 157 HLFLHGN--RI---SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp EEECCSS--CC---CEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred EEECCCC--cc---cccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 7777777 33 22223346666777777777777665555544
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=1.5e-14 Score=110.68 Aligned_cols=114 Identities=22% Similarity=0.158 Sum_probs=64.1
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
++++|++++|.+++..+. .+..+++|++|++++|.++.. .+..+..+++|++ +++|.+.+..+..+..+++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHh--HhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 466666666666654444 555666666666666666543 3345556666666 66666655555556666666666
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCccc
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYAL 175 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l 175 (177)
++++| .+ ....+..+..+++|++|++++|.+.+ .+|..+
T Consensus 106 ~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~ 145 (276)
T 2z62_A 106 VAVET--NL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (276)
T ss_dssp ECTTS--CC---CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred ECCCC--Cc---cccCchhcccCCCCCEEECcCCccceecCchhh
Confidence 66666 33 22223245566666666666666654 234443
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.54 E-value=6.8e-15 Score=117.81 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=59.2
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|+++++.++. +|.. .+..+++|++|++++|.++.. .+..|..+++|++ +++|.+.+..|..+..+++|++
T Consensus 45 ~~l~~l~l~~~~l~~-l~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK-LPAA-LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESE-ECTH-HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEecCCchhh-CChh-HhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 345566666666553 3320 245556666666666666543 3345555666666 5666665544555556666666
Q ss_pred EeCCCCcCCcccCCCchhHH-hhcCCCCCEEEeecccCCCCCCc
Q 041168 131 LDLSFNNFHLKLQGPSLANL-AEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
|++++| .+ . .+|.. +..+++|++|++++|.+.+..|.
T Consensus 122 L~L~~n--~l---~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 122 LVLERN--DL---S-SLPRGIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp EECCSS--CC---C-CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred EECCCC--cc---C-cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence 666666 33 2 23322 35555555555555555544333
No 47
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=3.2e-15 Score=129.09 Aligned_cols=111 Identities=28% Similarity=0.327 Sum_probs=93.6
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
..|+.|+|++|.+. .++. .+..+++|++|+|++|.|+ . +|..|..+++|++ |++|.|. .+|..|+.+++|++
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~--~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISA--NIFKYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCEEECTTSCCS-CCCG--GGGGCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred CCCcEEECCCCCCC-CCCh--hhcCCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 56788899998887 5666 6778899999999999998 5 8888888999999 8999988 77888999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
|+|++| .+ ..+|..|+.+++|++|+|++|.|++.+|..+
T Consensus 298 L~L~~N--~l----~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 298 FYFFDN--MV----TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EECCSS--CC----CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EECCCC--CC----CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999999 44 4578788899999999999999988777655
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.54 E-value=2.2e-14 Score=122.18 Aligned_cols=113 Identities=20% Similarity=0.113 Sum_probs=62.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+..+++|++|++++|.+++. .|..+..+++|++ +++|.+.+..+..|..+++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 3566666666666654444 456666666666666666554 4555555666666 5566555333334555666666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
|++++| .+ .+..|..+..+++|++|++++|.+++..|.
T Consensus 102 L~L~~n--~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 102 LHLMSN--SI---QKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp EECCSS--CC---CCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred EECCCC--cc---CccChhHccccCCCCEEECCCCcccccCch
Confidence 666665 33 233334455555555555555555544443
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=3.5e-15 Score=126.91 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=103.7
Q ss_pred CCcEEEEEccCCccccc-----------------cCCCcccc--cCcCCcEEEccCCCCCCCCCCccccCCccccc--cc
Q 041168 52 NGHVIRLDLTSSCLYGS-----------------INSSSSLF--QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LS 110 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~-----------------~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls 110 (177)
..++++|++++|.+++. +|. .+. ++++|++|++++|.+.+. +|..++.+++|++ ++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECc
Confidence 36899999999999985 888 888 999999999999999988 9999999999999 99
Q ss_pred ccc-CCC-CCChhhhCC------CCCCEEeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 111 NPS-FFG-QIPAELLEL------SDLESLDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 111 ~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
+|+ +.+ .+|..++.+ ++|++|++++| .+ . .+|. .+..+++|++|++++|.++|.+| .++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n--~l---~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN--NL---K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS--CC---S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCC--cC---C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 998 887 789888876 99999999999 55 4 6888 89999999999999999998888 553
No 50
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=5.8e-14 Score=101.00 Aligned_cols=104 Identities=19% Similarity=0.169 Sum_probs=86.2
Q ss_pred EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168 56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL 133 (177)
Q Consensus 56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L 133 (177)
+.+++++|.++ .+|. .+. +.|++|+|++|.+++. .|..|..+++|++ |++|++.+..+..+..+++|++|+|
T Consensus 15 ~~l~~~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 47899999987 5666 553 8999999999999976 6788999999999 9999998655556789999999999
Q ss_pred CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168 134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST 170 (177)
Q Consensus 134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 170 (177)
++| .+ ....+..+..+++|++|+|++|++...
T Consensus 89 ~~N--~l---~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 89 NDN--HL---KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CSS--CC---CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCC--cc---ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999 45 443344588999999999999999854
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=1.4e-14 Score=122.30 Aligned_cols=110 Identities=13% Similarity=0.038 Sum_probs=48.5
Q ss_pred EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168 55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD 132 (177)
Q Consensus 55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~ 132 (177)
++.+++++|.+....+. .+..+++|++|+|++|.+++. .|..|..+++|++ |++|.+.+..|..|+.+++|++|+
T Consensus 53 l~~l~l~~~~l~~lp~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CSEEEESSCEESEECTH--HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeCCCCCCcCHH--HHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 44455555544432222 234444555555555554432 3334444455554 445554444444444455555555
Q ss_pred CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++| .+ ....+..|..+++|++|+|++|.+++..|
T Consensus 130 L~~n--~l---~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 130 LERN--DL---SSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp CCSS--CC---CCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred eeCC--CC---CCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 5544 22 22112223444444444444444444333
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=125.54 Aligned_cols=96 Identities=23% Similarity=0.231 Sum_probs=53.0
Q ss_pred ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChh--hhCCCCCCEEeCCCCcCCcccCCCc-hh
Q 041168 74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAE--LLELSDLESLDLSFNNFHLKLQGPS-LA 148 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~~~l~~~~~~-~p 148 (177)
.+.++++|++|+|++|.+.+. .|..|..+++|++ |++|.+.+.+|.. +..+++|++|+|++|. + .+. .+
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l---~~~~~~ 141 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ--I---RSLYLH 141 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC--C---CCCCCC
T ss_pred HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc--c---cccccc
Confidence 445555555555555555543 4555555555555 5555555444443 5555666666666663 2 222 22
Q ss_pred HHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 149 NLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 149 ~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
..++.+++|++|+|++|.+++..|..+
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 456666666777777666666555544
No 53
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=2.4e-14 Score=113.88 Aligned_cols=111 Identities=22% Similarity=0.223 Sum_probs=94.1
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
..+|+.|++++|.+++..+. .|..+++|++|+|++|.++.. .+..|..+++|++ |++|++.+..|..|..+++|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSE--AFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccccCEEECCCCcCCccChh--hccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 36899999999999977666 799999999999999999964 4567899999999 999999987788999999999
Q ss_pred EEeCCCCcCCcccCCCchhHH-h---hcCCCCCEEEeecccCCCCCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANL-A---EKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~-~---~~l~~L~~L~Ls~N~l~g~~p 172 (177)
+|+|++| .+ . .+|.. + ..+++|+.|+|++|+|++ +|
T Consensus 140 ~L~L~~N--~l---~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~ 179 (361)
T 2xot_A 140 KLYLSQN--QI---S-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LP 179 (361)
T ss_dssp EEECCSS--CC---C-SCCGGGTC----CTTCCEEECCSSCCCC-CC
T ss_pred EEECCCC--cC---C-eeCHHHhcCcccCCcCCEEECCCCCCCc-cC
Confidence 9999999 44 3 35544 3 579999999999999985 44
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.51 E-value=3.9e-14 Score=119.13 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=92.8
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
..+++|++++|.+++..+. .|..+++|++|++++|.+... .|..|..+++|++ +++|.+.+..|..++.+++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 5789999999999977777 899999999999999999876 6888999999999 9999998888888999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++| .+ ....+..+..+++|++|++++|.+++
T Consensus 110 L~L~~n--~i---~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 110 LFFIQT--GI---SSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp EECTTS--CC---SCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred eecccc--Cc---ccCCcchhccCCcccEEECCCCcccc
Confidence 999999 44 34335567788888888888888876
No 55
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=100.82 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=91.6
Q ss_pred EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168 56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL 133 (177)
Q Consensus 56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L 133 (177)
+.+++++|.++ .+|. .+ .+.|++|++++|.++ . +|..|..+++|++ |++|.+.+..+..|..+++|++|+|
T Consensus 13 ~~l~~~~~~l~-~ip~--~~--~~~l~~L~L~~n~i~-~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPK--GI--PRDVTELYLDGNQFT-L-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS-SCCS--CC--CTTCCEEECCSSCCC-S-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC-cCCC--CC--CCCCCEEECCCCcCc-h-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 47899999988 5666 44 368999999999998 5 8899999999999 9999999877788999999999999
Q ss_pred CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
++| .+ ....+..|..+++|++|+|++|.|+...+..+
T Consensus 86 s~N--~l---~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 86 SYN--RL---RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp CSS--CC---CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCC--cc---CEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 999 55 55556779999999999999999996443333
No 56
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=2.8e-14 Score=123.21 Aligned_cols=93 Identities=31% Similarity=0.326 Sum_probs=82.3
Q ss_pred ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
.+..++.|+.|+|++|.+. . +|..+..+++|++ |++|.+. .+|..|+.+++|++|+|++| .+ . .+|..+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N--~l---~-~lp~~~ 289 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-N-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN--RL---T-SLPAEL 289 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-C-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS--CC---S-SCCSSG
T ss_pred hhccCCCCcEEECCCCCCC-C-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC--cC---C-ccChhh
Confidence 5778899999999999998 5 8888889999999 9999998 89999999999999999999 55 4 679899
Q ss_pred hcCCCCCEEEeecccCCCCCCcccc
Q 041168 152 EKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
..+++|++|+|++|.|+ .+|.+|+
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~~~~ 313 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPWEFG 313 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCSSTT
T ss_pred cCCCCCCEEECCCCCCC-ccChhhh
Confidence 99999999999999997 7888775
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=4e-14 Score=100.71 Aligned_cols=111 Identities=24% Similarity=0.142 Sum_probs=93.7
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCC-ChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQI-PAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L~ 129 (177)
+++++|++++|.+++. . .+..+++|++|++++|.+++. +|..+..+++|++ +++|.+.+.. +..+..+++|+
T Consensus 49 ~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--S--NLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGCCEEEEESSCCCCC--S--SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred CCCCEEeCcCCCCCCh--h--hhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 6899999999999865 5 789999999999999999976 7877788999999 9999998532 26889999999
Q ss_pred EEeCCCCcCCcccCCCchh---HHhhcCCCCCEEEeecccCCCCCCcc
Q 041168 130 SLDLSFNNFHLKLQGPSLA---NLAEKLANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p---~~~~~l~~L~~L~Ls~N~l~g~~p~~ 174 (177)
+|++++|. + ....+ ..+..+++|++|++++|.+. .+|++
T Consensus 124 ~L~l~~N~--l---~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 124 SLDLFNCE--V---TNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EEECCSSG--G---GTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EEEeeCCc--C---cchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999994 4 33323 47889999999999999987 46664
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=6e-14 Score=116.92 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=76.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+..+++|++|++++|.++.. .|..|..+++|++ +++|++.+..+..++.+++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp SSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred CCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccE
Confidence 4667777777766655455 566677777777777776643 4456677777777 7777766443335677777777
Q ss_pred EeCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 131 LDLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
|++++|. + .. .+|..+..+++|++|++++|.+++..|..+
T Consensus 129 L~L~~n~--l---~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 129 LNVAHNL--I---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp EECCSSC--C---CCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred EecCCCc--c---ceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 7777773 3 22 357777788888888888888776545443
No 59
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=9.2e-14 Score=116.92 Aligned_cols=106 Identities=24% Similarity=0.224 Sum_probs=94.3
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
.++.|++++|.+++ +| .+..+++|+.|+|++|.++ . +|..++.+++|++ |++|.+.+ +| .++.+++|++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp---~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LC---HLEQLLLVTHLDLSHNRLR-A-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS-CC---CGGGGTTCCEEECCSSCCC-C-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCC-Cc---CccccccCcEeecCccccc-c-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence 57899999999986 54 4889999999999999999 5 8999999999999 99999985 67 89999999999
Q ss_pred eCCCCcCCcccCCCch-hHHhhcCCCCCEEEeecccCCCCCC
Q 041168 132 DLSFNNFHLKLQGPSL-ANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~-p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
+|++| .+ .+.. |..+..+++|+.|+|++|++++..|
T Consensus 514 ~Ls~N--~l---~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 514 LLCNN--RL---QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ECCSS--CC---CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ECCCC--CC---CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999 55 4544 8899999999999999999997544
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=6.8e-14 Score=102.24 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=50.3
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
++++|++++|.+.. .+ .+..+++|++|++++|.+++. .+..+..+++|++ +++|.+.+..+..+..+++|++|
T Consensus 67 ~L~~L~l~~n~~~~--~~--~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 67 NIKDLTINNIHATN--YN--PISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp TCSEEEEESCCCSC--CG--GGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred CCCEEEccCCCCCc--ch--hhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 45555555554331 12 344455555555555555533 3444555555555 55555544444455555555555
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
++++| .. ...+| .+..+++|++|++++|.++
T Consensus 142 ~L~~n--~~---i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 142 DLSYN--GA---ITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ECCSC--TB---CCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred EccCC--CC---ccccH-hhcCCCCCCEEECCCCCCc
Confidence 55555 21 12233 3445555555555555554
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=1.3e-13 Score=108.19 Aligned_cols=117 Identities=22% Similarity=0.293 Sum_probs=96.5
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.|..+.|... .++++.|++++|.+.+..+. .+..+++|++|++++|.+++. .|..+..+++|++ +
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEEC
Confidence 68999999532 25799999999999977677 799999999999999999965 6888999999999 9
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
++|.+. .+|..+. ++|++|++++| .+ ....+..+..+++|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n--~i---~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDN--RI---RKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSS--CC---CCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCC--cc---CccCHhHhCCCccCCEEECCCCccc
Confidence 999987 6666554 78999999999 45 4444556888899999999998885
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=9.1e-14 Score=115.82 Aligned_cols=116 Identities=22% Similarity=0.144 Sum_probs=84.2
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++..+. .+..+++|++|++++|.+++. .+..|..+++|++ +++|.+.+..|..|..+++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 4677888888888766666 677888888888888887754 4566777888888 7888877666677788888888
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCcccc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYALA 176 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~ 176 (177)
|++++| .+ ....+..++.+++|++|++++|.+++ .+|..++
T Consensus 105 L~L~~n--~l---~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~ 146 (570)
T 2z63_A 105 LVAVET--NL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (570)
T ss_dssp EECTTS--CC---CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cccccc--cc---ccCCCccccccccccEEecCCCccceecChhhhc
Confidence 888888 33 22222247778888888888888776 4676654
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=2.2e-13 Score=105.49 Aligned_cols=109 Identities=26% Similarity=0.218 Sum_probs=80.9
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++ ++. ...+++|++|++++|.++ . +|..+..+++|++ +++|++.+..+..|..+++|++
T Consensus 55 ~~L~~L~L~~n~l~~-~~~---~~~l~~L~~L~Ls~N~l~-~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 55 TRLTQLNLDRAELTK-LQV---DGTLPVLGTLDLSHNQLQ-S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp TTCCEEECTTSCCCE-EEC---CSCCTTCCEEECCSSCCS-S-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred CCCCEEECCCCccCc-ccC---CCCCCcCCEEECCCCcCC-c-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 456666666666664 232 256677777888888777 4 7777888888888 8888888666677888899999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
|++++| .+ ....+..|..+++|+.|+|++|++++ +|.
T Consensus 129 L~L~~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~ 165 (290)
T 1p9a_G 129 LYLKGN--EL---KTLPPGLLTPTPKLEKLSLANNNLTE-LPA 165 (290)
T ss_dssp EECTTS--CC---CCCCTTTTTTCTTCCEEECTTSCCSC-CCT
T ss_pred EECCCC--CC---CccChhhcccccCCCEEECCCCcCCc-cCH
Confidence 999998 45 44445557788999999999999885 444
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.47 E-value=3.1e-13 Score=105.82 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=69.3
Q ss_pred CCccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--
Q 041168 40 CCLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA-- 108 (177)
Q Consensus 40 ~C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~-- 108 (177)
.|.+..+.|... .+.++.|++++|.+++..+. .+..+++|++|++++|.+++. .|..+..+++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEE
Confidence 368899998532 25789999999999977666 789999999999999999965 6888999999998
Q ss_pred cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168 109 LSNPSFFGQIPAELLELSDLESLDLSFN 136 (177)
Q Consensus 109 ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 136 (177)
+++|.+. .+|..+. ++|++|++++|
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n 131 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHEN 131 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSS
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCC
Confidence 8888876 4444322 44555555555
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=1.2e-13 Score=112.71 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=78.1
Q ss_pred cceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--ccc
Q 041168 43 WDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSN 111 (177)
Q Consensus 43 w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~ 111 (177)
|..|.|... ..+++.|++++|.+++..+. .|..+++|++|+|++|.+++. .+..|..+++|++ |++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCC
Confidence 567888532 25799999999999987777 899999999999999999865 6678899999999 999
Q ss_pred ccCCCCCChhhhCCCCCCEEeCCCCc
Q 041168 112 PSFFGQIPAELLELSDLESLDLSFNN 137 (177)
Q Consensus 112 n~l~~~~p~~~~~l~~L~~L~Ls~N~ 137 (177)
|++.+..+..+..+++|++|+|++|.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNP 158 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCC
Confidence 99986666678889999999999994
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=8.7e-14 Score=114.02 Aligned_cols=109 Identities=23% Similarity=0.219 Sum_probs=79.8
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++..+. .+.++++|++|+|++|.++.. .+..|..+++|++ +++|.+.+..+..+..+++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPG--AFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCEeChh--hhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 5788888888888876677 788888888888888888753 3345677888888 8888887766777777888888
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++| .+ ....+..|..+++|++|++++|.+++
T Consensus 133 L~l~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 133 LEVGDN--DL---VYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp EEECCT--TC---CEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred EECCCC--cc---ceeChhhccCCCCCCEEECCCCcCcc
Confidence 888877 33 33344456666666666666666654
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1.9e-13 Score=115.29 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=96.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+|++|++++|.+.+..+. .+..+++|++|+|++|.+++. .|..|+.+++|++ |++|.+.+..+..|+.+++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 5789999999999987777 899999999999999999976 6677899999999 9999998555555799999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST 170 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 170 (177)
|+|++| .+ .+..|..+..+++|++|+|++|.+++.
T Consensus 152 L~Ls~N--~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 152 LSMSNN--NL---ERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp EECCSS--CC---CBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred EEeeCC--cC---CCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 999999 55 566677899999999999999999864
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=4.3e-14 Score=117.52 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=100.2
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSDL 128 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~L 128 (177)
..++++|++++|.+++..+. .+..+++|++|++++|.+++. .+..++.+++|++ +++|.+.+ ..|..++.+++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGD--AFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCcccEEECCCCCcCccChh--hccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 36899999999999987777 899999999999999999965 5556999999999 99999986 356789999999
Q ss_pred CEEeCCCCcCCcccCCCchh-HHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 129 ESLDLSFNNFHLKLQGPSLA-NLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
++|++++| .+ .+.+| ..+..+++|++|++++|.+++.+|..++
T Consensus 126 ~~L~L~~n--~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 126 QTLRIGNV--ET---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CEEEEEES--SS---CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred cEEECCCC--cc---ccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 99999999 43 34454 5788999999999999999987877664
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=6.8e-14 Score=108.46 Aligned_cols=91 Identities=27% Similarity=0.330 Sum_probs=48.9
Q ss_pred cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCC-CCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFG-QIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
+..+++|++|++++|.+.+. .+..+..+++|++ +++|.+.+ .+|..+..+++|++|++++| .+ ....|..+
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l---~~~~~~~~ 195 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QL---EQLSPTAF 195 (306)
T ss_dssp TTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CC---CEECTTTT
T ss_pred hhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC--Cc---CCcCHHHh
Confidence 44445555555555555433 4444555555555 55555543 34455555556666666655 33 33335556
Q ss_pred hcCCCCCEEEeecccCCCCC
Q 041168 152 EKLANLKVLHLGQVNTASTV 171 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N~l~g~~ 171 (177)
..+++|++|++++|.+++..
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCC
T ss_pred cCCCCCCEEECCCCccCccC
Confidence 66666666666666666533
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=2.9e-13 Score=108.30 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=93.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+++++|++++|.+.+..+. .+..+++|++|++++|.+++. .|..+..+++|++ +++|.+....+..+..+++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 5799999999999877666 789999999999999999975 6777899999999 9999998443344689999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST 170 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 170 (177)
|++++| .+ ....+..+..+++|++|++++|.+++.
T Consensus 146 L~L~~n--~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 146 LSMSNN--NL---ERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp EECCSS--CC---CBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred EECCCC--cc---CccChhhccCCCCCCEEECCCCcCCcc
Confidence 999999 45 455566788999999999999998853
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=1.1e-13 Score=103.76 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=77.9
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCC-CCCCCCCccccCCccccc--ccc-ccCCCCCChhhhCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH-FNFSEIPSEIKNLSRLTA--LSN-PSFFGQIPAELLELSDL 128 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~--ls~-n~l~~~~p~~~~~l~~L 128 (177)
.+++.|++++|.+++..+. .+..+++|++|++++|. ++.. .+..|..+++|++ +++ |.+.+..+..|..+++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 4788899999988876665 67888889999999886 7743 3457788888888 887 88876555677888888
Q ss_pred CEEeCCCCcCCcccCCCchhHHhhcCCCCC---EEEeecc-cCCC
Q 041168 129 ESLDLSFNNFHLKLQGPSLANLAEKLANLK---VLHLGQV-NTAS 169 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~---~L~Ls~N-~l~g 169 (177)
++|++++|. + . .+|. +..+++|+ +|++++| .+++
T Consensus 108 ~~L~l~~n~--l---~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 108 KFLGIFNTG--L---K-MFPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp CEEEEEEEC--C---C-SCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred CEEeCCCCC--C---c-cccc-cccccccccccEEECCCCcchhh
Confidence 888888883 3 2 2444 55566665 6666666 5553
No 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=2.9e-13 Score=98.85 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=92.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+. .++ .+..+++|++|++++|.++ .++.+..+++|++ +++|.+.+..+..+..+++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~---~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT---GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HTCCEEEEESSCCS-CCT---TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CCccEEeccCCCcc-ChH---HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 47899999999998 344 4788999999999999776 4458899999999 9999998777888999999999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++| .+ ....+..+..+++|++|++++|.+.+.+|
T Consensus 117 L~Ls~n--~i---~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 117 LDISHS--AH---DDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp EECCSS--BC---BGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred EEecCC--cc---CcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 999999 55 55678889999999999999998333565
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.45 E-value=1.4e-13 Score=117.29 Aligned_cols=111 Identities=21% Similarity=0.183 Sum_probs=73.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.++++|++++|.+++..+. .+..+++|++|++++|.++. +| ..|..+++|++ +++|++.+..|..++.+++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp TTCSEEECCSSCCCCCCTT--HHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred CcCcEEECCCCccCccCHH--HHhcccCcCEEECCCCccCc--cChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 4677777777777766666 67777777777777777764 44 35677777777 777777655556677777777
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
+|++++| .+ .+..|..+..+++|++|++++|.+++..|
T Consensus 125 ~L~Ls~n--~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 125 TLDLSHN--GL---SSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp EEECCSS--CC---SCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred EEECCCC--cc---cccCchhhcccccCCEEEccCCcccccCH
Confidence 7777777 33 34445555666666666666666665433
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=2.8e-13 Score=118.50 Aligned_cols=122 Identities=22% Similarity=0.194 Sum_probs=97.8
Q ss_pred CccceEEEcCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCC-CccccCCccccc--cccccCCCC
Q 041168 41 CLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEI-PSEIKNLSRLTA--LSNPSFFGQ 117 (177)
Q Consensus 41 C~w~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~~--ls~n~l~~~ 117 (177)
|.|..|.+ ..+++++|++++|.+++..+. .+..+++|++|+|++|.+.+. + |..|..+++|++ |++|.+.+.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCccc
Confidence 45555655 346889999999999877777 888999999999999866544 5 677889999999 899999877
Q ss_pred CChhhhCCCCCCEEeCCCCcCCcccCCCchhHH--hhcCCCCCEEEeecccCCCCCC
Q 041168 118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANL--AEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 118 ~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~--~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
.|..|..+++|++|+|++| .+ .+.+|.. +..+++|++|+|++|.+++..|
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n--~l---~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFC--GL---SDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp CTTSSCSCSSCCCEECTTC--CC---SSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred CHhHccCCcccCEeeCcCC--CC---CcccccCccccccCCCCEEECCCCccccccc
Confidence 7888999999999999999 45 4444444 7889999999999999887654
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=7.9e-14 Score=110.30 Aligned_cols=116 Identities=24% Similarity=0.162 Sum_probs=93.9
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCc-cccCCccccc--cccccCCCCCCh--hhhCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPS-EIKNLSRLTA--LSNPSFFGQIPA--ELLELS 126 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~--ls~n~l~~~~p~--~~~~l~ 126 (177)
..+++.|++++|.+++..+. .+..+++|++|++++|.++. ++. .+..+++|++ +++|++.. +|. .+..++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEED--SFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCT
T ss_pred CCCCCEEECCCCccCccCHh--hcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCC
Confidence 36899999999999977677 78999999999999999985 554 4889999999 99999984 554 788999
Q ss_pred CCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 127 ~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
+|++|++++|+ .+ ....+..+..+++|++|++++|.+++..|..++
T Consensus 150 ~L~~L~l~~n~-~~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 150 KLQILRVGNMD-TF---TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp TCCEEEEEESS-SC---CEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CCcEEECCCCc-cc---cccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 99999999983 13 233356688888999999999988876676654
No 76
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=1.2e-12 Score=93.92 Aligned_cols=107 Identities=23% Similarity=0.207 Sum_probs=87.5
Q ss_pred EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168 56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL 133 (177)
Q Consensus 56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L 133 (177)
+.++++++.++. +|. .+ .++|++|++++|.+++. .+..+..+++|++ +++|.+.+..+..+..+++|++|++
T Consensus 10 ~~l~~~~~~l~~-~p~--~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPT--GI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSS-CCT--TC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCcc-CCC--CC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 578999999884 555 33 47999999999999964 4566789999999 9999998666667899999999999
Q ss_pred CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCcc
Q 041168 134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~ 174 (177)
++| .+ .+..+..+..+++|++|++++|.+++ +|..
T Consensus 84 ~~N--~l---~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~ 118 (177)
T 2o6r_A 84 HEN--KL---QSLPNGVFDKLTQLKELALDTNQLKS-VPDG 118 (177)
T ss_dssp CSS--CC---CCCCTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred CCC--Cc---cccCHHHhhCCcccCEEECcCCcceE-eCHH
Confidence 999 55 55555567899999999999999986 4443
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=1.8e-13 Score=113.14 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=81.0
Q ss_pred CccceEEEcCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc-CCccccc--cccccCCCC
Q 041168 41 CLWDGIKCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK-NLSRLTA--LSNPSFFGQ 117 (177)
Q Consensus 41 C~w~gv~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~--ls~n~l~~~ 117 (177)
|.+.++.+.. .++++.|++++|.+++..+. .+..+++|+.|+|++|.+++. .|..+. .+++|++ |++|.+.+.
T Consensus 109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCSR-GQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEECC-CSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCccc-cCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccc
Confidence 4455555543 25678888888887776666 677778888888888888765 555554 5777777 777777644
Q ss_pred CChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCccc
Q 041168 118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 118 ~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l 175 (177)
| .+..+++|++|+|++| .+ + .+|..+..+++|+.|+|++|.+++ +|..+
T Consensus 185 -~-~~~~l~~L~~L~Ls~N--~l---~-~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 185 -K-GQVVFAKLKTLDLSSN--KL---A-FMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp -E-CCCCCTTCCEEECCSS--CC---C-EECGGGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred -c-ccccCCCCCEEECCCC--CC---C-CCCHhHcCCCCccEEEecCCcCcc-cchhh
Confidence 2 2335777777777777 34 2 344456777777777777777774 55544
No 78
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=6.4e-14 Score=122.92 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=95.6
Q ss_pred CCcEEEEEccCCcccc-----------------ccCCCcccc--cCcCCcEEEccCCCCCCCCCCccccCCccccc--cc
Q 041168 52 NGHVIRLDLTSSCLYG-----------------SINSSSSLF--QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LS 110 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~-----------------~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls 110 (177)
..+++.|++++|.+++ .+|. .+. ++++|++|+|++|.+.+. +|..+..+++|++ ++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIA 523 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECc
Confidence 3689999999999998 3787 776 999999999999999887 9999999999999 99
Q ss_pred ccc-CCC-CCChhhhCCC-------CCCEEeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 111 NPS-FFG-QIPAELLELS-------DLESLDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 111 ~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
+|+ +.+ .+|..++.++ +|++|+|++| .+ . .+|. .+..+++|++|+|++|.++ .+| .++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N--~L---~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN--NL---E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS--CC---C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCC--cC---C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 998 887 7787766655 8999999998 55 4 6777 7888888888888888887 677 443
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.44 E-value=3.5e-13 Score=109.67 Aligned_cols=92 Identities=24% Similarity=0.227 Sum_probs=74.0
Q ss_pred cceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--ccc
Q 041168 43 WDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSN 111 (177)
Q Consensus 43 w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~ 111 (177)
+..|.|... ..+++.|++++|.+++..+. .|..+++|++|+|++|.++.. .+..|..+++|++ |++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCC
Confidence 567888532 25688999999999877667 788899999999999998864 5577888888988 888
Q ss_pred ccCCCCCChhhhCCCCCCEEeCCCCc
Q 041168 112 PSFFGQIPAELLELSDLESLDLSFNN 137 (177)
Q Consensus 112 n~l~~~~p~~~~~l~~L~~L~Ls~N~ 137 (177)
|++....+..+..+++|++|+|++|.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCc
Confidence 88886555678888888888888884
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.43 E-value=3.6e-13 Score=112.64 Aligned_cols=106 Identities=21% Similarity=0.174 Sum_probs=90.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+++++|++++|.+++..+. .+..+++|++|++++|.+++. .|..|..+++|++ +++|++. .+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 5799999999999977667 889999999999999999965 6788999999999 9999997 56665 7899999
Q ss_pred EeCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++|+ + .. .+|..++.+++|++|++++|.+++
T Consensus 126 L~Ls~N~--l---~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 126 LDLSFND--F---DVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp EECCSSC--C---SBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred EECCCCC--c---cccCchHhhcccCcccEEecCCCcccc
Confidence 9999994 4 22 346788999999999999998875
No 81
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.42 E-value=4.5e-13 Score=112.68 Aligned_cols=111 Identities=25% Similarity=0.251 Sum_probs=49.1
Q ss_pred EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCC--CCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSE--IPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+++|++++|.+.+..+. .+..+++|++|++++|.+.+.. .+..+..+++|++ +++|++.+..|..+..+++|++
T Consensus 427 L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQ--LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp CCEEECTTCCCBTTCTT--TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEECCCCccCCcCHH--HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 34444444444333333 3344444444444444443210 1123444444444 4444444444444555555555
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCCc
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVPY 173 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 173 (177)
|++++| .+ .+..|..+..+++| +|++++|++++..|.
T Consensus 505 L~Ls~N--~l---~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 505 VDLSHN--RL---TSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp EECCSS--CC---CGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred EECCCC--cc---CcCChhHhCccccc-EEECcCCcccccCHh
Confidence 555555 23 33444445555555 555555555544333
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=114.03 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=46.0
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
++++|++++|.+++..+. .+..+++|++|++++|.+++. .|..|..+++|++ +++|++. .+|.. .+++|++|
T Consensus 22 ~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 22 KTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL 95 (520)
T ss_dssp TCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred cccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence 444445554444433333 344444444444444444432 3444444444444 4444444 23332 44444444
Q ss_pred eCCCCcCCcccCCC-chhHHhhcCCCCCEEEeecccCC
Q 041168 132 DLSFNNFHLKLQGP-SLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~-~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
++++|. + .+ .+|..++.+++|++|++++|.++
T Consensus 96 ~L~~N~--l---~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 96 DLSFNA--F---DALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp ECCSSC--C---SSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred eccCCc--c---ccccchhhhccCCcceEEEecCcccc
Confidence 444442 2 11 23344444444444444444443
No 83
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=5.3e-13 Score=95.76 Aligned_cols=102 Identities=22% Similarity=0.171 Sum_probs=48.9
Q ss_pred cEEEEEccCCccccccCCCcccccCc-CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLV-HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+++.|++++|.++. ++. +..+. +|++|++++|.+++ + ..+..+++|++ +++|.+.+..+..+..+++|++
T Consensus 20 ~L~~L~l~~n~l~~-i~~---~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN---LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp SCEEEECTTSCCCS-CCC---GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CceEEEeeCCCCch-hHH---hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 45555555555552 222 23332 55555555555552 3 34455555555 5555554332223355555555
Q ss_pred EeCCCCcCCcccCCCchhH--HhhcCCCCCEEEeecccCC
Q 041168 131 LDLSFNNFHLKLQGPSLAN--LAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~--~~~~l~~L~~L~Ls~N~l~ 168 (177)
|++++| .+ +.+|. .+..+++|++|++++|+++
T Consensus 93 L~L~~N--~i----~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 93 LILTNN--SL----VELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECCSC--CC----CCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EECCCC--cC----CcchhhHhhhcCCCCCEEEecCCCCC
Confidence 555555 22 22333 4455555555555555554
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=1.8e-13 Score=106.67 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=40.6
Q ss_pred cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCC--CChhh--hCCCCCCEEeCCCCcCCcccCCC--chh-H
Q 041168 79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQ--IPAEL--LELSDLESLDLSFNNFHLKLQGP--SLA-N 149 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~~~l~~~~~--~~p-~ 149 (177)
++|++|++++|.+.+. .|..+..+++|++ +++|++.+. ++..+ ..+++|++|++++| .+ .. .++ .
T Consensus 149 ~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N--~l---~~~~~~~~~ 222 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA--GM---ETPSGVCSA 222 (312)
T ss_dssp TTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS--CC---CCHHHHHHH
T ss_pred CCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC--cC---cchHHHHHH
Confidence 3444444444444432 2344444444444 444444322 12222 44455555555555 22 11 122 2
Q ss_pred HhhcCCCCCEEEeecccCCCCCC
Q 041168 150 LAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 150 ~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
.+..+++|++|++++|.+++.+|
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHhcCCCCCEEECCCCcCCcccc
Confidence 23456677777777777766543
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=2.2e-13 Score=106.24 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=35.0
Q ss_pred cEEEEEccCCccccccCCCccc--ccCcCCcEEEccCCCCCCCCCCccccCC-----ccccc--cccccCCCCCChhhhC
Q 041168 54 HVIRLDLTSSCLYGSINSSSSL--FQLVHLEWLVLSNNHFNFSEIPSEIKNL-----SRLTA--LSNPSFFGQIPAELLE 124 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~p~~~~~l-----~~L~~--ls~n~l~~~~p~~~~~ 124 (177)
++++|++++|.+++.+|. .+ ..+++|++|++++|.+++ .|..+..+ ++|++ +++|++.+..|..++.
T Consensus 96 ~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 444444444444444443 32 444444444444444442 23333333 44444 4444444333344444
Q ss_pred CCCCCEEeCCCC
Q 041168 125 LSDLESLDLSFN 136 (177)
Q Consensus 125 l~~L~~L~Ls~N 136 (177)
+++|++|++++|
T Consensus 172 l~~L~~L~Ls~N 183 (312)
T 1wwl_A 172 FPALSTLDLSDN 183 (312)
T ss_dssp CSSCCEEECCSC
T ss_pred CCCCCEEECCCC
Confidence 444444444444
No 86
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=9.2e-13 Score=94.25 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=81.6
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--c
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--L 109 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--l 109 (177)
|.|+.+.|... ..+++.|++++|.+++..+. .+..+++|++|+|++|++++. .+..|..+++|++ |
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG--VFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSL 85 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh--hhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEEC
Confidence 67888888532 25789999999999987777 899999999999999999964 4556789999999 9
Q ss_pred ccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168 110 SNPSFFGQIPAELLELSDLESLDLSFNNF 138 (177)
Q Consensus 110 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~~ 138 (177)
++|++.+..+..+..+++|++|+|++|++
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99999976666799999999999999954
No 87
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=1.8e-13 Score=95.40 Aligned_cols=103 Identities=23% Similarity=0.131 Sum_probs=86.7
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCC-CChhhhCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQ-IPAELLELSDL 128 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~-~p~~~~~l~~L 128 (177)
.++++.|++++|.+++. . .+..+++|++|++++|.+++. +|..+..+++|++ +++|.+.+. .+..+..+++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--A--NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCCEEECTTSCCCCC--T--TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred cCCCcEEECcCCCCCCc--h--hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 36899999999999865 5 789999999999999999976 7877888999999 999999853 33788999999
Q ss_pred CEEeCCCCcCCcccCCCchh---HHhhcCCCCCEEEeec
Q 041168 129 ESLDLSFNNFHLKLQGPSLA---NLAEKLANLKVLHLGQ 164 (177)
Q Consensus 129 ~~L~Ls~N~~~l~~~~~~~p---~~~~~l~~L~~L~Ls~ 164 (177)
++|++++|. + ....+ ..+..+++|++|++++
T Consensus 116 ~~L~l~~N~--l---~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 116 KSLDLFNCE--V---TNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTCG--G---GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEeCcCCc--c---cchHHHHHHHHHHCCCcccccCCC
Confidence 999999994 4 33333 4788999999999863
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=110.65 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=92.9
Q ss_pred EEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeC
Q 041168 56 IRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDL 133 (177)
Q Consensus 56 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~L 133 (177)
++|++++|.++ .+|. .+. ++|++|++++|.+++. .|..|..+++|++ +++|++.+..|..|..+++|++|++
T Consensus 3 ~~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 47999999999 5776 565 8999999999999965 5678999999999 9999999877889999999999999
Q ss_pred CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCcccc
Q 041168 134 SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYALA 176 (177)
Q Consensus 134 s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~ 176 (177)
++| .+ ..+|.. .+++|++|++++|.+++ .+|..++
T Consensus 77 s~N--~l----~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 77 SHN--KL----VKISCH--PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp CSS--CC----CEEECC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred CCC--ce----eecCcc--ccCCccEEeccCCccccccchhhhc
Confidence 999 55 357766 89999999999999997 5777765
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.37 E-value=1.5e-12 Score=101.98 Aligned_cols=83 Identities=23% Similarity=0.192 Sum_probs=47.8
Q ss_pred CCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCC
Q 041168 80 HLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANL 157 (177)
Q Consensus 80 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L 157 (177)
+|++|++++|.+++. .+..+..+++|++ +++|.+.+..+..+..+++|++|++++| .+ ..+|..+..+++|
T Consensus 193 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l----~~lp~~l~~l~~L 265 (330)
T 1xku_A 193 SLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--KL----VKVPGGLADHKYI 265 (330)
T ss_dssp TCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS--CC----SSCCTTTTTCSSC
T ss_pred cCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC--cC----ccCChhhccCCCc
Confidence 444444444444433 3445555666666 6666665544455666666666666666 33 2455566666666
Q ss_pred CEEEeecccCCC
Q 041168 158 KVLHLGQVNTAS 169 (177)
Q Consensus 158 ~~L~Ls~N~l~g 169 (177)
++|++++|++++
T Consensus 266 ~~L~l~~N~i~~ 277 (330)
T 1xku_A 266 QVVYLHNNNISA 277 (330)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCcCCc
Confidence 667776666664
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=3.6e-13 Score=104.86 Aligned_cols=113 Identities=19% Similarity=0.067 Sum_probs=58.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCC---CCCCccccCCccccc--cccccCCCCCCh----hhh
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNF---SEIPSEIKNLSRLTA--LSNPSFFGQIPA----ELL 123 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~p~~~~~l~~L~~--ls~n~l~~~~p~----~~~ 123 (177)
+++++|++++|.+.+..+. .+..+++|++|++++|.+.+ ...+..+..+++|++ +++|++. .++. .+.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCE--QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp SCCCEEEEECCSSCCCCTT--SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHH--HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 4566666666666655555 56666666666666666542 001122344555555 5555554 2222 134
Q ss_pred CCCCCCEEeCCCCcCCcccCCCchhHHhhcC---CCCCEEEeecccCCCCCCcc
Q 041168 124 ELSDLESLDLSFNNFHLKLQGPSLANLAEKL---ANLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 124 ~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l---~~L~~L~Ls~N~l~g~~p~~ 174 (177)
.+++|++|+|++| .+ ....|..+..+ ++|++|+|++|+|+ .+|..
T Consensus 222 ~l~~L~~L~Ls~N--~l---~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 269 (310)
T 4glp_A 222 AGVQPHSLDLSHN--SL---RATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG 269 (310)
T ss_dssp HTCCCSSEECTTS--CC---CCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred cCCCCCEEECCCC--CC---CccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence 5556666666666 33 33334334333 45555555555555 34443
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=4.1e-13 Score=96.38 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=87.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCc-cccCCccccc--cccccCCCCCCh--hhhCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPS-EIKNLSRLTA--LSNPSFFGQIPA--ELLELSD 127 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~--ls~n~l~~~~p~--~~~~l~~ 127 (177)
++++.|++++|.+++. . .+..+++|++|++++|.++. +|+ .+..+++|++ +++|.+. .+|. .+..+++
T Consensus 42 ~~L~~L~Ls~N~l~~~--~--~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--D--GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS 114 (176)
T ss_dssp TCCSEEECCSSCCCEE--C--CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred CCCCEEECCCCCCCcc--c--ccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCC
Confidence 4899999999999964 4 78999999999999999995 554 4588999999 9999996 6676 7899999
Q ss_pred CCEEeCCCCcCCcccCCCchhH----HhhcCCCCCEEEeecccCC
Q 041168 128 LESLDLSFNNFHLKLQGPSLAN----LAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 128 L~~L~Ls~N~~~l~~~~~~~p~----~~~~l~~L~~L~Ls~N~l~ 168 (177)
|++|++++|+ + ..+|. .+..+++|+.|+++.|.+.
T Consensus 115 L~~L~l~~N~--i----~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 115 LTYLCILRNP--V----TNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSSG--G----GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEEecCCC--C----CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999994 4 23555 3889999999999999763
No 92
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=106.26 Aligned_cols=81 Identities=21% Similarity=0.159 Sum_probs=62.4
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+|+.|++++|.+.+..+. .|.++++|++|+|++|.++.. .+..|..+++|++ +++|.+....+..+..+++|++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIG--AFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SSCCEEECCSSCCCEECGG--GGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCccChh--hccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 6789999999998876666 788889999999999998854 4456888888888 8888887555556666666666
Q ss_pred EeCCCC
Q 041168 131 LDLSFN 136 (177)
Q Consensus 131 L~Ls~N 136 (177)
|++++|
T Consensus 165 L~l~~~ 170 (440)
T 3zyj_A 165 LDLGEL 170 (440)
T ss_dssp EECCCC
T ss_pred eCCCCC
Confidence 666664
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=1.3e-12 Score=102.49 Aligned_cols=87 Identities=22% Similarity=0.131 Sum_probs=67.1
Q ss_pred cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCC
Q 041168 79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLAN 156 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~ 156 (177)
++|++|++++|.+++. .+..+..+++|++ +++|.+.+..+..+..+++|++|++++| .+ ..+|..+..+++
T Consensus 193 ~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l----~~lp~~l~~l~~ 265 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN--KL----SRVPAGLPDLKL 265 (332)
T ss_dssp SSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS--CC----CBCCTTGGGCTT
T ss_pred CCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC--cC----eecChhhhcCcc
Confidence 4677777777777754 5567788888888 8888888766667888888888888888 44 357777888888
Q ss_pred CCEEEeecccCCCCCC
Q 041168 157 LKVLHLGQVNTASTVP 172 (177)
Q Consensus 157 L~~L~Ls~N~l~g~~p 172 (177)
|++|++++|++++..+
T Consensus 266 L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGV 281 (332)
T ss_dssp CCEEECCSSCCCBCCT
T ss_pred CCEEECCCCCCCccCh
Confidence 8888888888875433
No 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=1.6e-12 Score=106.10 Aligned_cols=81 Identities=21% Similarity=0.157 Sum_probs=63.2
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++..+. .+..+++|++|+|++|.++.. .+..|..+++|++ |++|.+....+..+..+++|++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVG--AFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCCcChh--hccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 6789999999999877767 888899999999999999854 4456888889998 8888887554545666666666
Q ss_pred EeCCCC
Q 041168 131 LDLSFN 136 (177)
Q Consensus 131 L~Ls~N 136 (177)
|++++|
T Consensus 176 L~l~~~ 181 (452)
T 3zyi_A 176 LDLGEL 181 (452)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 666653
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=1.5e-12 Score=101.69 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=47.5
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccc-cCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEI-KNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
+++.|++++|.+++..+. .+..+++|++|++++|.+++. .+..+ ..+++|++ +++|.+.+. + ....+++|++
T Consensus 121 ~L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~ 195 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT 195 (317)
T ss_dssp SCEEEECCSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred CCCEEECCCCCCCCccch--hhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCE
Confidence 455555555555544443 444555555555555555532 23333 23444544 455544422 1 1123444555
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
|++++| .+ ..+|..+..+++|++|++++|.++
T Consensus 196 L~Ls~N--~l----~~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 196 LDLSSN--KL----AFMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp EECCSS--CC----CEECGGGGGGTTCSEEECTTSCCC
T ss_pred EECCCC--cC----CcchhhhcccCcccEEECcCCccc
Confidence 555554 22 123333444455555555555544
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=3.1e-12 Score=107.03 Aligned_cols=108 Identities=25% Similarity=0.180 Sum_probs=92.5
Q ss_pred EEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEe
Q 041168 55 VIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLD 132 (177)
Q Consensus 55 l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~ 132 (177)
.+++++++|.+++ +|. .+. ++|++|++++|.+++. .+..|..+++|++ +++|++.+..|..|..+++|++|+
T Consensus 33 ~~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3799999999995 776 554 8999999999999965 5678999999999 999999988888999999999999
Q ss_pred CCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC-CCCcccc
Q 041168 133 LSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS-TVPYALA 176 (177)
Q Consensus 133 Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~ 176 (177)
+++| .+ ..+|.. .+++|++|++++|++++ .+|..++
T Consensus 107 Ls~N--~l----~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~ 143 (562)
T 3a79_B 107 VSHN--RL----QNISCC--PMASLRHLDLSFNDFDVLPVCKEFG 143 (562)
T ss_dssp CTTS--CC----CEECSC--CCTTCSEEECCSSCCSBCCCCGGGG
T ss_pred CCCC--cC----CccCcc--ccccCCEEECCCCCccccCchHhhc
Confidence 9999 45 356765 89999999999999987 3556664
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=9.4e-13 Score=102.82 Aligned_cols=111 Identities=19% Similarity=0.107 Sum_probs=91.8
Q ss_pred CcEEEEEccCCccccccCCCccc-ccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSL-FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.+++.|++++|.+.+..+. .+ ..+++|++|++++|.++. ++ ....+++|++ +++|++. .+|..+..+++|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~--~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~ 217 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217 (317)
T ss_dssp SSEEEEECTTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EE-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCS
T ss_pred CCCCEEECCCCCCCcccHH--HHhhccCcCCEEECCCCcCcc--cc-cccccccCCEEECCCCcCC-cchhhhcccCccc
Confidence 6899999999999976665 55 478999999999999984 43 3445889999 9999998 4566799999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC-CCCCccc
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA-STVPYAL 175 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~l 175 (177)
+|++++| .+ ..+|..+..+++|++|++++|++. +.+|..+
T Consensus 218 ~L~L~~N--~l----~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 218 WISLRNN--KL----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EEECTTS--CC----CEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred EEECcCC--cc----cchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 9999999 55 357888899999999999999998 4444443
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=9.6e-13 Score=98.63 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=67.1
Q ss_pred CcEEEEEccCCc-cccccCCCcccccCcCCcEEEccC-CCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC
Q 041168 53 GHVIRLDLTSSC-LYGSINSSSSLFQLVHLEWLVLSN-NHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL 128 (177)
Q Consensus 53 ~~l~~L~l~~n~-l~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L 128 (177)
++++.|++++|. ++...+. .+..+++|++|++++ |.++.. .+..|..+++|++ +++|.+.+ +|. +..+++|
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L 129 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST 129 (239)
T ss_dssp TTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC
T ss_pred CCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc
Confidence 567777777775 6654444 566777777777776 777643 3355667777777 77776664 444 5566666
Q ss_pred C---EEeCCCC-cCCcccCCCchhHHhhcCCCCC-EEEeecccCCCCCCc
Q 041168 129 E---SLDLSFN-NFHLKLQGPSLANLAEKLANLK-VLHLGQVNTASTVPY 173 (177)
Q Consensus 129 ~---~L~Ls~N-~~~l~~~~~~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~ 173 (177)
+ +|++++| .+ ....+..|..+++|+ +|++++|.++ .+|.
T Consensus 130 ~~L~~L~l~~N~~l-----~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 130 DIFFILEITDNPYM-----TSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp CSEEEEEEESCTTC-----CEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred ccccEEECCCCcch-----hhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 6 6666666 32 122223355666666 6666666665 3443
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2e-12 Score=106.85 Aligned_cols=111 Identities=19% Similarity=0.099 Sum_probs=93.1
Q ss_pred CcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
++++.|++++|.+++..+. .+. .++.|+.|+|++|.+++ ++ .+..+++|++ |++|.+.+ +|+.+..+++|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~--~l~~~l~~L~~L~Ls~N~l~~--~~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~ 217 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217 (487)
T ss_dssp SSEEEEECTTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EE-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred CCCCEEECCCCCCCCcChH--HHhhhCCcccEEecCCCcccc--cc-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCcc
Confidence 6899999999999987777 675 79999999999999985 43 3446899999 99999985 556699999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC-CCCCccc
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA-STVPYAL 175 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~l 175 (177)
.|+|++| .+ ..+|..+..+++|+.|++++|.+. +.+|..+
T Consensus 218 ~L~Ls~N--~l----~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 218 WISLRNN--KL----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEECTTS--CC----CEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred EEEecCC--cC----cccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 9999999 55 347888889999999999999998 4454433
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=99.59 Aligned_cols=120 Identities=19% Similarity=0.078 Sum_probs=81.4
Q ss_pred cEEEEEccCCccccccCCCccc--ccCcCCcEEEccCCCCCCCCCC----ccccCCccccc--cccccCCCCCChhhhCC
Q 041168 54 HVIRLDLTSSCLYGSINSSSSL--FQLVHLEWLVLSNNHFNFSEIP----SEIKNLSRLTA--LSNPSFFGQIPAELLEL 125 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~p----~~~~~l~~L~~--ls~n~l~~~~p~~~~~l 125 (177)
++++|++++|.+.+..+. .+ ..+++|++|++++|.+++. .+ ..+..+++|++ +++|.+.+..+..+..+
T Consensus 92 ~L~~L~l~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPP--LPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp CCCEEEEESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ceeEEEeeCCEeccchhh--hhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 488899999988877776 66 6777888888888877754 33 23345677777 77777776666667777
Q ss_pred CCCCEEeCCCCcCC----c-------ccC-----------CCchhH----HhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 126 SDLESLDLSFNNFH----L-------KLQ-----------GPSLAN----LAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 126 ~~L~~L~Ls~N~~~----l-------~~~-----------~~~~p~----~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
++|++|+|++|++. + .++ ...++. .+..+++|++|+|++|.+++.+|..++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 77777777777421 0 000 112233 246778999999999999887676553
No 101
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.6e-11 Score=88.20 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=72.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++..+. .+..+++|++|+|++|++++. .+..|..+++|++ |++|++.+..+..+..+++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHH--HhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 5789999999999987777 899999999999999999964 3445789999999 9999999655556999999999
Q ss_pred EeCCCCcC
Q 041168 131 LDLSFNNF 138 (177)
Q Consensus 131 L~Ls~N~~ 138 (177)
|+|++|++
T Consensus 110 L~L~~N~~ 117 (174)
T 2r9u_A 110 IYLYNNPW 117 (174)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCc
Confidence 99999954
No 102
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.2e-11 Score=97.33 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=70.2
Q ss_pred CccceEEEcCCCCcEEEEEccCC-ccccccCCCcccccCcCCcEEEccC-CCCCCCCCCccccCCccccc--cccccCCC
Q 041168 41 CLWDGIKCNEDNGHVIRLDLTSS-CLYGSINSSSSLFQLVHLEWLVLSN-NHFNFSEIPSEIKNLSRLTA--LSNPSFFG 116 (177)
Q Consensus 41 C~w~gv~c~~~~~~l~~L~l~~n-~l~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~--ls~n~l~~ 116 (177)
|.|..|.|. ++ .++. +|. +..+++|+.|+|++ |.+++. .+..|..+++|++ |++|+|.+
T Consensus 8 C~~~~v~~~------------~~n~l~~-ip~---l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 8 HGSSGLRCT------------RDGALDS-LHH---LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp SSSSCEECC------------SSCCCTT-TTT---SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCE
T ss_pred ccCCEEEcC------------CCCCCCc-cCC---CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccce
Confidence 777666664 33 4552 443 56667778888875 777753 3456777778877 77888777
Q ss_pred CCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 117 QIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 117 ~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
..|..|..+++|++|+|++| .+ ....+..+..++ |+.|+|.+|++..
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N--~l---~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFN--AL---ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSS--CC---SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eCHHHhcCCcCCCEEeCCCC--cc---ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77777777888888888888 44 333333344444 7888888887764
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.27 E-value=3.2e-11 Score=94.73 Aligned_cols=106 Identities=27% Similarity=0.374 Sum_probs=79.8
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++.. .+..+++|++|++++|.++. + +.+..+++|++ +++|.+.+ + +.+..+++|++
T Consensus 221 ~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~ 291 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLS----PLANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNS 291 (347)
T ss_dssp TTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred CcCCEEEccCCccCCCc----chhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCE
Confidence 56777788777776432 35677888888888888773 3 45777888888 88888874 3 45778888888
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++| .+ ....+..+..+++|++|++++|++++..|
T Consensus 292 L~L~~n--~l---~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 292 LFLNNN--QL---GNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp EECCSS--CC---CGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred EECcCC--cC---CCcChhHhhccccCCEEEccCCccccccC
Confidence 888888 45 55667778888999999999999887554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=3.5e-11 Score=92.97 Aligned_cols=101 Identities=24% Similarity=0.274 Sum_probs=56.6
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++ ++ .+..+++|++|++++|.++. + +.+..+++|++ +++|++.+. ..+..+++|++
T Consensus 90 ~~L~~L~l~~n~l~~-~~---~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-LS---SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp TTCCEEECCSSCCCC-GG---GGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred CCCCEEECCCCcCCC-Ch---hhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 345555555555543 21 35555566666666666552 2 34555666666 666666532 45566666666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++| .+ .. ++. +..+++|++|++++|.+++
T Consensus 161 L~L~~N--~l---~~-~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 161 LSLEDN--QI---SD-IVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECCSS--CC---CC-CGG-GTTCTTCCEEECCSSCCCB
T ss_pred EEccCC--cc---cc-chh-hcCCCccCEEECCCCcCCC
Confidence 666666 33 22 222 6666777777777776664
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.26 E-value=5.5e-12 Score=99.82 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=78.4
Q ss_pred CccceEEEcCC---------CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--
Q 041168 41 CLWDGIKCNED---------NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA-- 108 (177)
Q Consensus 41 C~w~gv~c~~~---------~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~-- 108 (177)
|.+..|.|... ..++++|+|++|.|+...+. .|.++++|++|+|++|.+.+. +| ..|..+++++.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIR 85 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhh
Confidence 78899999532 24789999999999965445 789999999999999998755 55 46788888876
Q ss_pred -cccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168 109 -LSNPSFFGQIPAELLELSDLESLDLSFNNF 138 (177)
Q Consensus 109 -ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~ 138 (177)
+..|++....|..|..+++|++|++++|.+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred cccCCcccccCchhhhhcccccccccccccc
Confidence 667899877778899999999999999954
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.25 E-value=1.5e-11 Score=96.59 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=87.3
Q ss_pred CCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 52 NGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 52 ~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.++++.|++++|.+++. + .+..+++|++|++++|.++. + +.+..+++|+. +++|.+.+..+..+..+++|+
T Consensus 242 l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--N--AVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CTTCCEEECCSSCCCCC--G--GGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCCCCEEECCCCccCCC--h--hHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 46899999999999863 3 68889999999999999984 4 46888999999 999999988888899999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
+|++++| .+ ....| +..+++|++|++++|.|+
T Consensus 315 ~L~L~~n--~l---~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQN--HI---TDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSS--SC---CCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCC--cc---ccccC--hhhhhccceeehhhhccc
Confidence 9999999 45 44444 889999999999999885
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=4.4e-11 Score=92.41 Aligned_cols=99 Identities=29% Similarity=0.364 Sum_probs=43.0
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
+++.|++++|.+++. + .+..+++|+.|++++|.++. + ..+..+++|++ +++|.+.+.. . +..+++|++|
T Consensus 113 ~L~~L~L~~n~i~~~--~--~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L 183 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--N--GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIV-P-LAGLTKLQNL 183 (291)
T ss_dssp TCCEEECTTSCCCCC--G--GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCG-G-GTTCTTCCEE
T ss_pred CCCEEECCCCcCCCC--h--hhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccch-h-hcCCCccCEE
Confidence 444444444444431 1 34444444455554444442 2 33444444444 4444444222 1 4444444555
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
++++| .+ ..++. +..+++|+.|++++|+++
T Consensus 184 ~L~~N--~i----~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 184 YLSKN--HI----SDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSS--CC----CBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred ECCCC--cC----CCChh-hccCCCCCEEECcCCccc
Confidence 55444 22 11222 444444445555444443
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.24 E-value=4.2e-11 Score=93.20 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=34.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++. + .+..+++|++|++++|.++. ++ .+..+++|++ +++|.+.+. +. +..+++|++
T Consensus 85 ~~L~~L~L~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~ 155 (308)
T 1h6u_A 85 TKITELELSGNPLKNV--S--AIAGLQSIKTLDLTSTQITD--VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQY 155 (308)
T ss_dssp CSCCEEECCSCCCSCC--G--GGTTCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCE
T ss_pred CCCCEEEccCCcCCCc--h--hhcCCCCCCEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccE
Confidence 3455555555555432 1 34445555555555555542 22 2444444444 444444422 21 444444444
Q ss_pred EeCCCC
Q 041168 131 LDLSFN 136 (177)
Q Consensus 131 L~Ls~N 136 (177)
|++++|
T Consensus 156 L~l~~n 161 (308)
T 1h6u_A 156 LSIGNA 161 (308)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 444444
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.24 E-value=3.9e-11 Score=93.39 Aligned_cols=101 Identities=26% Similarity=0.328 Sum_probs=56.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++. + .+..+++|++|++++|.+++ ++. +..+++|++ +++|.+.+ ++. +..+++|++
T Consensus 107 ~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDV-T---PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp TTCCEEECTTSCCCCC-G---GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred CCCCEEECCCCCCCCc-h---hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence 5677777777776642 2 35666666666666666663 232 555666666 66666653 332 556666666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++| .+ .. ++. +..+++|++|++++|++++
T Consensus 178 L~l~~n--~l---~~-~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 178 LKADDN--KI---SD-ISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp EECCSS--CC---CC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred EECCCC--cc---Cc-Chh-hcCCCCCCEEEccCCccCc
Confidence 666666 22 22 222 4455555555555555543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=6.5e-11 Score=90.24 Aligned_cols=100 Identities=24% Similarity=0.296 Sum_probs=48.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.+++.. .+..+++|++|++++|.+++ +|.. .. ++|++ +++|++.+ + +.+..+++|++
T Consensus 63 ~~L~~L~L~~N~i~~~~----~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~ 132 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLS----PLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEI 132 (263)
T ss_dssp TTCCEEECCSSCCCCCG----GGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCE
T ss_pred CCCCEEECCCCccCCCh----hhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccE
Confidence 45666666666655322 24555566666666666553 3321 11 44444 55555543 2 23455555555
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++| .+ . .++ .+..+++|++|++++|.+++
T Consensus 133 L~Ls~N--~i---~-~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 133 LSIRNN--KL---K-SIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EECTTS--CC---C-BCG-GGGGCTTCCEEECTTSCCCB
T ss_pred EECCCC--cC---C-CCh-HHccCCCCCEEECCCCcCcc
Confidence 555555 22 1 122 34445555555555555443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=3.9e-11 Score=100.90 Aligned_cols=102 Identities=26% Similarity=0.259 Sum_probs=85.7
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCC-ChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQI-PAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~-p~~~~~l~~L~ 129 (177)
.+++.|++++|.++ .+|. .+..+++|+.|+|++|.+++ +| .++.+++|++ |++|++.+.. |..++.+++|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~--~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPP--ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp TTCCEEECCSSCCC-CCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ccCcEeecCccccc-ccch--hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 58999999999999 6888 89999999999999999994 67 8999999999 9999999776 99999999999
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEEe
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLHL 162 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~L 162 (177)
+|+|++|+|.- ........+..+++|+.|++
T Consensus 537 ~L~L~~N~l~~--~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQ--EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGG--SSSCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCC--CccHHHHHHHHCcccCccCC
Confidence 99999995421 01122234566899999975
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=9.6e-12 Score=104.67 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=68.8
Q ss_pred CCCCCCCCCCCCCC-----ccceE-EEcCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc
Q 041168 28 VASWSQEEENRDCC-----LWDGI-KCNEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK 101 (177)
Q Consensus 28 l~~W~~~~~~~~~C-----~w~gv-~c~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~ 101 (177)
+.+|. ....+| .|.++ .|.. .+++.|++++|.+++ +|. .+ +++|++|+|++|.++ . +| .
T Consensus 33 l~~W~---~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~-~-ip---~ 97 (571)
T 3cvr_A 33 WDKWE---KQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALI-S-LP---E 97 (571)
T ss_dssp HHHHH---TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCS-C-CC---C
T ss_pred HHHHh---ccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCc-c-cc---c
Confidence 44575 455677 68888 6753 478889999888886 665 44 367777888777777 3 56 3
Q ss_pred CCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 102 NLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 102 ~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
.+++|++ +++|++.+ +|. +.. +|++|++++| .+ ++ +|. .+++|+.|+|++|.|+
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N--~l---~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN--QL---TM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS--CC---SC-CCC---CCTTCCEEECCSSCCS
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC--cC---CC-CCC---cCccccEEeCCCCccC
Confidence 4566666 66776664 454 433 5666666666 23 22 333 3444445555554444
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=8.6e-11 Score=99.54 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=55.3
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+|+.|+|++|.+.+ + + .+..+++|+.|+|++|.+.. + +.+..+++|+. |++|.+.+. ..+..+++|+.
T Consensus 87 ~~L~~L~Ls~N~l~~-l-~--~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-L-S--SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 157 (605)
T ss_dssp TTCCEEECCSSCCCC-C-T--TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred CCCCEEECcCCCCCC-C-h--hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCE
Confidence 344555555555443 1 1 34555555555555555552 2 23555556666 666666532 45566666666
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|+|++| .+ ....| +..+++|+.|+|++|.|++
T Consensus 158 L~Ls~N--~l---~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 158 LSLEDN--QI---SDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECCSS--CC---CCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EECcCC--cC---CCchh--hccCCCCCEEECcCCCCCC
Confidence 666666 33 33333 6666677777777776664
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=8.6e-11 Score=99.54 Aligned_cols=100 Identities=30% Similarity=0.378 Sum_probs=46.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+|+.|+|++|.+.+. + .+..+++|+.|+|++|.+++ + ..+..+++|+. |++|.+.+..| +..+++|+.
T Consensus 109 ~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--N--GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TTCCEEECTTSCCCCC--G--GGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCCEEEecCCCCCCC--c--cccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 3455555555554431 1 34445555555555555542 2 34444555555 55555543322 445555555
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
|+|++| .+ . .++ .+..+++|+.|+|++|++.
T Consensus 180 L~Ls~N--~i---~-~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 180 LYLSKN--HI---S-DLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EECCSS--CC---C-BCG-GGTTCTTCSEEECCSEEEE
T ss_pred EECcCC--CC---C-CCh-HHccCCCCCEEEccCCcCc
Confidence 555555 22 1 122 2444555555555555544
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=1.3e-12 Score=102.16 Aligned_cols=116 Identities=23% Similarity=0.215 Sum_probs=52.7
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCC-CCCCCCCCccccCCccccc--cccc-cCCCC-CChhhhCCC-C
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNN-HFNFSEIPSEIKNLSRLTA--LSNP-SFFGQ-IPAELLELS-D 127 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~--ls~n-~l~~~-~p~~~~~l~-~ 127 (177)
++++|++++|.+++..+. .+..+++|++|++++| .+++..++..+..+++|++ +++| .+.+. ++..+..++ +
T Consensus 119 ~L~~L~L~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp CCSEEECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCEEeCcCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 444444444444433333 3444455555555554 3332102333444445555 4444 44321 233344555 5
Q ss_pred CCEEeCCCCcCCcccCC-CchhHHhhcCCCCCEEEeeccc-CCCCCCcc
Q 041168 128 LESLDLSFNNFHLKLQG-PSLANLAEKLANLKVLHLGQVN-TASTVPYA 174 (177)
Q Consensus 128 L~~L~Ls~N~~~l~~~~-~~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~ 174 (177)
|++|++++|.+.+ + ..++..+..+++|++|++++|. +++..+..
T Consensus 197 L~~L~l~~~~~~~---~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 197 ITQLNLSGYRKNL---QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp CCEEECCSCGGGS---CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred CCEEEeCCCcccC---CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 5555555552111 1 2344455556666666666665 44444433
No 116
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.3e-11 Score=94.24 Aligned_cols=83 Identities=24% Similarity=0.191 Sum_probs=71.0
Q ss_pred CcEEEEEccC-CccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTS-SCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.+|+.|+|++ |.+++..+. .|..+++|+.|+|++|.|++. .|..|..+++|++ |++|+|.+..+..+..++ |+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp SCCSEEECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCeeEEEccCCCCCCCcChh--HhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 5799999996 999977667 799999999999999999976 6778999999999 999999965555555555 99
Q ss_pred EEeCCCCcCC
Q 041168 130 SLDLSFNNFH 139 (177)
Q Consensus 130 ~L~Ls~N~~~ 139 (177)
.|+|.+|+|.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 9999999553
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=1e-10 Score=89.16 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=84.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.+++.|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++ +++|++.+ +|. +.. ++|++
T Consensus 41 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~ 110 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LA---GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSR 110 (263)
T ss_dssp TTCSEEECTTSCCCC-CT---TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCE
T ss_pred CcCcEEECcCCCccc-ch---HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccE
Confidence 679999999999884 43 57889999999999999995 555 899999999 99999985 444 333 89999
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAST 170 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 170 (177)
|++++| .+ . .++ .+..+++|++|++++|++++.
T Consensus 111 L~L~~N--~l---~-~~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 111 LFLDNN--EL---R-DTD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp EECCSS--CC---S-BSG-GGTTCTTCCEEECTTSCCCBC
T ss_pred EEccCC--cc---C-CCh-hhcCcccccEEECCCCcCCCC
Confidence 999999 44 2 344 588999999999999999863
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.16 E-value=6.8e-11 Score=96.80 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=38.5
Q ss_pred ccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhc
Q 041168 76 FQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK 153 (177)
Q Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~ 153 (177)
..+++|+.|++++|.+++. .| +..+++|+. +++|.+.+. ..+..+++|++|++++| .+ .+..| +..
T Consensus 306 ~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n--~l---~~~~~--~~~ 373 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDI-SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN--QI---SDLTP--LAN 373 (466)
T ss_dssp GGCTTCSEEECCSSCCSCC-GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS--CC---CBCGG--GTT
T ss_pred cCCCCCCEEECcCCcCCCc-hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC--cc---Cccch--hhc
Confidence 3444444444444444432 11 344444444 444544432 23455555555555555 23 23333 455
Q ss_pred CCCCCEEEeecccCCC
Q 041168 154 LANLKVLHLGQVNTAS 169 (177)
Q Consensus 154 l~~L~~L~Ls~N~l~g 169 (177)
+++|++|++++|++++
T Consensus 374 l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCCEEEEC
T ss_pred CCCCCEEeccCCcccC
Confidence 5555555555555554
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=1.7e-10 Score=94.43 Aligned_cols=86 Identities=27% Similarity=0.303 Sum_probs=47.8
Q ss_pred cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhh
Q 041168 75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAE 152 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~ 152 (177)
+..+++|+.|++++|.+++ ++. +..+++|+. +++|++.+..| +..+++|++|++++| .+ .+ + ..+.
T Consensus 283 ~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n--~l---~~-~-~~l~ 350 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN--KV---SD-V-SSLA 350 (466)
T ss_dssp GTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS--CC---CC-C-GGGT
T ss_pred ccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC--cc---CC-c-hhhc
Confidence 3444555555555555543 222 455555555 55665554332 456666666666666 33 22 2 3466
Q ss_pred cCCCCCEEEeecccCCCCCC
Q 041168 153 KLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 153 ~l~~L~~L~Ls~N~l~g~~p 172 (177)
.+++|+.|++++|++++..|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG
T ss_pred cCCCCCEEeCCCCccCccch
Confidence 77777777777777776554
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=9.9e-12 Score=99.31 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=68.9
Q ss_pred CcEEEEEccCCcccc-----ccCCCcccccCcCCcEEEccCCCCC----CCCCCccccCCccccc--cccccCCCC----
Q 041168 53 GHVIRLDLTSSCLYG-----SINSSSSLFQLVHLEWLVLSNNHFN----FSEIPSEIKNLSRLTA--LSNPSFFGQ---- 117 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~-----~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~~p~~~~~l~~L~~--ls~n~l~~~---- 117 (177)
++++.|++++|.++. ..+. .+..+++|++|+|++|.++ .. +|..+..+++|++ |++|.+.+.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSA-LAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHH-HHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHH-HHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 356666666666652 2333 4556667777777777763 23 5556666777777 777776543
Q ss_pred CChhhh--CCCCCCEEeCCCCcCCcccCCC----chhHHh-hcCCCCCEEEeecccCCCCC
Q 041168 118 IPAELL--ELSDLESLDLSFNNFHLKLQGP----SLANLA-EKLANLKVLHLGQVNTASTV 171 (177)
Q Consensus 118 ~p~~~~--~l~~L~~L~Ls~N~~~l~~~~~----~~p~~~-~~l~~L~~L~Ls~N~l~g~~ 171 (177)
++..+. .+++|++|+|++| .+ .. .+|..+ .++++|++|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n--~i---~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYN--EI---ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSS--CC---BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCC--cC---CHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 344443 3677777777777 34 33 256655 55777888888888777654
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.13 E-value=2e-10 Score=94.19 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=62.7
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++. | .+..+++|++|++++|.+++ +| ++.+++|++ +++|.+.+. + ++.+++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 4677777777777653 2 46667777777777777764 33 666677777 677776643 3 666777777
Q ss_pred EeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++| .+ .+ ++ +..+++|++|++++|.+++
T Consensus 111 L~L~~N--~l---~~-l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 111 LNCDTN--KL---TK-LD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp EECCSS--CC---SC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred EECCCC--cC---Ce-ec--CCCCCcCCEEECCCCccce
Confidence 777777 33 22 33 5566666666666666654
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=4e-11 Score=100.90 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=51.0
Q ss_pred CcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCC-------CEEeCCCCcCCcccCCCchh
Q 041168 78 LVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDL-------ESLDLSFNNFHLKLQGPSLA 148 (177)
Q Consensus 78 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~~~l~~~~~~~p 148 (177)
+++|++|+|++|.+++ +|. +. ++|++ |++|++. .+|. +.. +| +.|+|++| .+ ..+|
T Consensus 159 l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N--~l----~~lp 223 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN--RI----THIP 223 (571)
T ss_dssp CTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS--CC----CCCC
T ss_pred CCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC--cc----eecC
Confidence 3455555555555553 444 33 55666 6666665 4444 433 55 77777777 33 3467
Q ss_pred HHhhcCCCCCEEEeecccCCCCCCcccc
Q 041168 149 NLAEKLANLKVLHLGQVNTASTVPYALA 176 (177)
Q Consensus 149 ~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 176 (177)
..+..+++|+.|+|++|++++.+|..++
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 7777788888888888888877776543
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=3.8e-13 Score=98.27 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=87.8
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++ +| .+..+++|++|++++|.++ . +|..+..+++|++ +++|++.+ +| .+..+++|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~---~~~~l~~L~~L~l~~n~l~-~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS---SLSGMENLRILSLGRNLIK-K-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp TTCSEEECSEEEESC-CC---CHHHHTTCCEEEEEEEEEC-S-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred CCCCEEECCCCCCcc-cc---ccccCCCCCEEECCCCCcc-c-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 578999999999886 44 5788999999999999998 4 7887778889999 99999985 54 6888999999
Q ss_pred EeCCCCcCCcccCCCchh--HHhhcCCCCCEEEeecccCCCCCC
Q 041168 131 LDLSFNNFHLKLQGPSLA--NLAEKLANLKVLHLGQVNTASTVP 172 (177)
Q Consensus 131 L~Ls~N~~~l~~~~~~~p--~~~~~l~~L~~L~Ls~N~l~g~~p 172 (177)
|++++| .+ ..++ ..+..+++|++|++++|++.+.+|
T Consensus 120 L~l~~N--~i----~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 120 LYMSNN--KI----TNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEESEE--EC----CCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EECCCC--cC----CchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 999999 44 2333 468899999999999999876544
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.08 E-value=3.9e-12 Score=99.48 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=36.2
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
+++.|++++|.+.+..+. +..+++|++|++++|.++...++..+..+++|++ +++|.+.+..+..+..+++|++|
T Consensus 71 ~l~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TCSEEECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred cceEEEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 445555555554433222 3344555555555554432102333444444544 44444443344444444555555
Q ss_pred eCCCC
Q 041168 132 DLSFN 136 (177)
Q Consensus 132 ~Ls~N 136 (177)
++++|
T Consensus 148 ~L~~~ 152 (336)
T 2ast_B 148 NLSGC 152 (336)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 55444
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.05 E-value=2.5e-10 Score=97.01 Aligned_cols=82 Identities=24% Similarity=0.222 Sum_probs=61.8
Q ss_pred cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCC
Q 041168 79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLAN 156 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~ 156 (177)
++|+.|++++|.+++ +| ..+++|++ +++|++. .+|. .+++|++|+|++| .+ . .+|..+..+++
T Consensus 221 ~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N--~L---~-~lp~~l~~l~~ 285 (622)
T 3g06_A 221 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN--QL---T-RLPESLIHLSS 285 (622)
T ss_dssp TTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS--CC---C-SCCGGGGGSCT
T ss_pred CCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC--CC---C-cCCHHHhhccc
Confidence 567777777777773 45 34566777 8888887 5555 5678899999988 45 3 57888999999
Q ss_pred CCEEEeecccCCCCCCccc
Q 041168 157 LKVLHLGQVNTASTVPYAL 175 (177)
Q Consensus 157 L~~L~Ls~N~l~g~~p~~l 175 (177)
|+.|+|++|++++.+|..+
T Consensus 286 L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TCEEECCSCCCCHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHH
Confidence 9999999999988766644
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.05 E-value=8.4e-10 Score=90.46 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=53.5
Q ss_pred cccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhh
Q 041168 75 LFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLAE 152 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~ 152 (177)
+..+++|++|++++|.+++ +| +..+++|+. +++|++.+. .++.+++|++|++++| .+ .+ +| +.
T Consensus 166 ~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N--~l---~~-ip--~~ 230 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN--KL---TE-ID--VT 230 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS--CC---SC-CC--CT
T ss_pred cccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC--cc---cc-cC--cc
Confidence 3455666666666666663 33 556666666 677776643 2667777777777777 34 33 45 66
Q ss_pred cCCCCCEEEeecccCCCCC
Q 041168 153 KLANLKVLHLGQVNTASTV 171 (177)
Q Consensus 153 ~l~~L~~L~Ls~N~l~g~~ 171 (177)
.+++|++|++++|++++..
T Consensus 231 ~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC
T ss_pred ccCCCCEEEeeCCcCCCcC
Confidence 7778888888888777643
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.05 E-value=1.4e-11 Score=98.37 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=61.0
Q ss_pred cEEEEEccCCccc-cccC---CCcccccCcCCcEEEccCCCCCCCC----CCccccCCccccc--cccccCC----CCCC
Q 041168 54 HVIRLDLTSSCLY-GSIN---SSSSLFQLVHLEWLVLSNNHFNFSE----IPSEIKNLSRLTA--LSNPSFF----GQIP 119 (177)
Q Consensus 54 ~l~~L~l~~n~l~-~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~----~p~~~~~l~~L~~--ls~n~l~----~~~p 119 (177)
+++.|++++|.++ +.++ . .+..+++|++|++++|.++... .+..+..+++|++ |++|.+. ..+|
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAK--TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHH--HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHH--HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 5555566555554 1222 2 3345566666666666665100 2224556666666 6666663 3455
Q ss_pred hhhhCCCCCCEEeCCCCcCCcccCCCc----hhHHhhc--CCCCCEEEeecccCCC
Q 041168 120 AELLELSDLESLDLSFNNFHLKLQGPS----LANLAEK--LANLKVLHLGQVNTAS 169 (177)
Q Consensus 120 ~~~~~l~~L~~L~Ls~N~~~l~~~~~~----~p~~~~~--l~~L~~L~Ls~N~l~g 169 (177)
..+..+++|++|+|++|. + ... ++..+.. +++|++|+|++|.+++
T Consensus 238 ~~l~~~~~L~~L~L~~n~--i---~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCL--L---SARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHGGGCTTCCEEECTTCC--C---CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHccCCCcCEEECCCCC--C---chhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 566666777777777773 3 222 3455533 6777777777777765
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.05 E-value=1.8e-10 Score=94.31 Aligned_cols=84 Identities=27% Similarity=0.362 Sum_probs=39.8
Q ss_pred cCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCC--chhHHhhcC
Q 041168 79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGP--SLANLAEKL 154 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~--~~p~~~~~l 154 (177)
++|++|++++|++++ +|.. +++|++ +++|++. .+|. .+++|++|++++|+ + .+ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~--l---~~l~~ip~~l~~L 382 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNP--L---REFPDIPESVEDL 382 (454)
T ss_dssp TTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC--C---SSCCCCCTTCCEE
T ss_pred CcCCEEECCCCcccc--cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCC--C---CcCCCChHHHHhh
Confidence 366777777777663 4543 356666 7777776 4555 46778888888884 4 33 566666666
Q ss_pred -------------CCCCEEEeecccCCC--CCCcccc
Q 041168 155 -------------ANLKVLHLGQVNTAS--TVPYALA 176 (177)
Q Consensus 155 -------------~~L~~L~Ls~N~l~g--~~p~~l~ 176 (177)
++|++|++++|++++ .+|.+++
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp ECCC---------------------------------
T ss_pred hhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 778888888888876 6777654
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.04 E-value=2.9e-11 Score=95.98 Aligned_cols=117 Identities=23% Similarity=0.278 Sum_probs=75.0
Q ss_pred cEEEEEccCCccccccCCCcccccC-----cCCcEEEccCCCCCCCCCCcc----ccCC-ccccc--cccccCCCCCChh
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQL-----VHLEWLVLSNNHFNFSEIPSE----IKNL-SRLTA--LSNPSFFGQIPAE 121 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~p~~----~~~l-~~L~~--ls~n~l~~~~p~~ 121 (177)
++++|++++|.+++..+. .+..+ ++|++|+|++|.++.. .+.. +..+ ++|++ +++|.+.+..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSD--ELVQILAAIPANVTSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceeEEECcCCCCCHHHHH--HHHHHHhccCCCccEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 688888888887765444 45543 7788888888888754 3433 3333 67777 8888887555444
Q ss_pred hh----C-CCCCCEEeCCCCcCCcccCCCchhHHhhcCC-CCCEEEeecccCCCCCCcc
Q 041168 122 LL----E-LSDLESLDLSFNNFHLKLQGPSLANLAEKLA-NLKVLHLGQVNTASTVPYA 174 (177)
Q Consensus 122 ~~----~-l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~~ 174 (177)
+. . .++|++|+|++|.+.-.. ...++..+..++ +|++|+|++|.+++..+..
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 186 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKS-SDELIQILAAIPANVNSLNLRGNNLASKNCAE 186 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHH-HHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence 33 3 358888888888432100 013455566665 8888888888887655543
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.01 E-value=8e-11 Score=93.43 Aligned_cols=111 Identities=22% Similarity=0.258 Sum_probs=85.2
Q ss_pred CcEEEEEccCCccccccC----CCcccccCc-CCcEEEccCCCCCCCCCCccccCC-----ccccc--cccccCCCCCCh
Q 041168 53 GHVIRLDLTSSCLYGSIN----SSSSLFQLV-HLEWLVLSNNHFNFSEIPSEIKNL-----SRLTA--LSNPSFFGQIPA 120 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~----~~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l-----~~L~~--ls~n~l~~~~p~ 120 (177)
.+++.|++++|.+++..+ . .+..++ +|++|+|++|.++.. .+..+..+ ++|++ +++|.+.+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQ--AFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHH--HHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCceEEEccCCCCChHHHHHHHH--HHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 469999999999986554 5 677788 899999999999865 56666664 88999 999999876666
Q ss_pred hh----hCC-CCCCEEeCCCCcCCcccCCCchhHH----hhc-CCCCCEEEeecccCCCCC
Q 041168 121 EL----LEL-SDLESLDLSFNNFHLKLQGPSLANL----AEK-LANLKVLHLGQVNTASTV 171 (177)
Q Consensus 121 ~~----~~l-~~L~~L~Ls~N~~~l~~~~~~~p~~----~~~-l~~L~~L~Ls~N~l~g~~ 171 (177)
.+ ..+ ++|++|++++|. + +...+.. +.. .++|++|+|++|.+++..
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~--l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND--F---SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC--G---GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred HHHHHHHhCCCCccEEECcCCc--C---CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 44 444 899999999994 4 3333333 444 369999999999998543
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=3.5e-12 Score=93.14 Aligned_cols=103 Identities=27% Similarity=0.310 Sum_probs=83.4
Q ss_pred cEEEEEccCCccccccC------CCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCC
Q 041168 54 HVIRLDLTSSCLYGSIN------SSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLEL 125 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~------~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l 125 (177)
.++.++++.+.+.+..+ . .+..+++|++|++++|.++. +| .+..+++|++ +++|.+. .+|..+..+
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~--~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHH--HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhH--HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 44555555555554433 3 57889999999999999984 67 8889999999 9999998 778888888
Q ss_pred CCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 126 SDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 126 ~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
++|++|++++| .+ . .+| .+..+++|++|++++|.+++
T Consensus 93 ~~L~~L~L~~N--~l---~-~l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 93 DTLEELWISYN--QI---A-SLS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHCSEEEEEEE--EC---C-CHH-HHHHHHHSSEEEESEEECCC
T ss_pred CcCCEEECcCC--cC---C-cCC-ccccCCCCCEEECCCCcCCc
Confidence 99999999999 45 3 366 68889999999999999984
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.95 E-value=2.3e-10 Score=97.23 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCCCccceEEE------cCCCCcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc
Q 041168 28 VASWSQEEENRDCCLWDGIKC------NEDNGHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK 101 (177)
Q Consensus 28 l~~W~~~~~~~~~C~w~gv~c------~~~~~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~ 101 (177)
...|. ...++|.|.+..+ .....+++.|++++|.++ .+|. .+. ++|++|++++|.++ . +|.
T Consensus 12 w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~-~-lp~--- 78 (622)
T 3g06_A 12 WSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLT-S-LPA--- 78 (622)
T ss_dssp HHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCS-C-CCC---
T ss_pred HHHHH---hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCC-C-CCC---
Confidence 45676 5567888865322 111134667777777766 4554 343 56666666666666 2 444
Q ss_pred CCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168 102 NLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN 136 (177)
Q Consensus 102 ~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 136 (177)
.+++|++ +++|++. .+|. .+++|++|++++|
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence 3455555 6666655 3443 4455555555555
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.93 E-value=1.7e-09 Score=85.45 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=82.2
Q ss_pred EEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCC-ccccCCccccc--cccccCCCCCCh-hhhCCCCCCE-E
Q 041168 57 RLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIP-SEIKNLSRLTA--LSNPSFFGQIPA-ELLELSDLES-L 131 (177)
Q Consensus 57 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~--ls~n~l~~~~p~-~~~~l~~L~~-L 131 (177)
+++.++++++ .+|. .+ .+++++|+|++|+|+. +| ..|..+++|++ |++|++.+.+|. .|..++++.+ +
T Consensus 13 ~v~C~~~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 13 VFLCQESKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp EEEEESTTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred EEEecCCCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 5778889988 5676 55 4689999999999994 66 56899999999 999998766654 5788888876 5
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCCCC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTASTV 171 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g~~ 171 (177)
.+..| .+ ....|..|..+++|++|++++|++.+..
T Consensus 86 ~~~~N--~l---~~l~~~~f~~l~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 86 IEKAN--NL---LYINPEAFQNLPNLQYLLISNTGIKHLP 120 (350)
T ss_dssp EEEET--TC---CEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred cccCC--cc---cccCchhhhhccccccccccccccccCC
Confidence 55677 45 4445677899999999999999998643
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.90 E-value=4.8e-09 Score=85.88 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=54.2
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCE
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLES 130 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~ 130 (177)
.++++|++++|.+++ +| .+..+++|++|++++|.+++ +|..+ .+|++ +++|++.+ +| .++.+++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp---~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP---ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCC-Cc---ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence 356666666666654 33 35666666666666666653 44332 24444 55555553 33 3555555555
Q ss_pred EeCCCCcCCcccC---------------CCchhHHhhcCCCCCEEEeecccCCC
Q 041168 131 LDLSFNNFHLKLQ---------------GPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 131 L~Ls~N~~~l~~~---------------~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
|++++|.+.- ++ ...+| .+..+++|++|++++|++++
T Consensus 200 L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 200 IYADNNSLKK-LPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp EECCSSCCSS-CCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred EECCCCcCCc-CCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 5555553210 00 01234 25566666666666666664
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.81 E-value=1.1e-10 Score=94.76 Aligned_cols=63 Identities=24% Similarity=0.061 Sum_probs=33.2
Q ss_pred CCccccc--cccccCCCCCChhhhC-----CCCCCEEeCCCCcCCcccCCC----chhHHhhcCCCCCEEEeecccCCC
Q 041168 102 NLSRLTA--LSNPSFFGQIPAELLE-----LSDLESLDLSFNNFHLKLQGP----SLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 102 ~l~~L~~--ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~~~l~~~~~----~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
.+++|++ +++|.+.+..+..+.. .++|++|++++| .+ +. .+|..+..+++|++|++++|++++
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n--~i---~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC--DV---SDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CC---CHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC--CC---ChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 3445555 5555554322222221 445666666666 33 22 455666666777777777776653
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.78 E-value=4.9e-10 Score=91.01 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=80.3
Q ss_pred CcEEEEEccCCccccc----cCCCcccccCcCCcEEEccCCCCCCCCCCccccC-----Cccccc--cccccCCCC----
Q 041168 53 GHVIRLDLTSSCLYGS----INSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKN-----LSRLTA--LSNPSFFGQ---- 117 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~-----l~~L~~--ls~n~l~~~---- 117 (177)
.+++.|++++|.+++. ++. .+..+++|++|++++|.++.. .+..+.. .++|++ +++|.+.+.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 6899999999998854 455 667789999999999988643 2223322 357888 999988754
Q ss_pred CChhhhCCCCCCEEeCCCCcCCcccCCCchhHHhhc-----CCCCCEEEeecccCCC
Q 041168 118 IPAELLELSDLESLDLSFNNFHLKLQGPSLANLAEK-----LANLKVLHLGQVNTAS 169 (177)
Q Consensus 118 ~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~-----l~~L~~L~Ls~N~l~g 169 (177)
++..+..+++|++|++++| .+ ....+..+.. .++|++|++++|.+++
T Consensus 333 l~~~l~~~~~L~~L~Ls~n--~i---~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNN--RL---EDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHHHHCSSCCEEECCSS--BC---HHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHHhhCCCccEEEccCC--cc---ccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 4566778899999999999 44 3333333332 6799999999999875
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=3.5e-09 Score=84.66 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=39.0
Q ss_pred cCCcEEEccCCCCCCCC---CCccccCCccccc--cccccCCCC----CChhhhCCCCCCEEeCCCCcCCcccCCCchhH
Q 041168 79 VHLEWLVLSNNHFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----IPAELLELSDLESLDLSFNNFHLKLQGPSLAN 149 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~ 149 (177)
+.|++|+|++|.++... ++..+...++|++ |++|.+... ++..+...++|++|+|++|.|.-.. ...++.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-ALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-HHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-HHHHHH
Confidence 34555555555443210 1122234445555 555554321 1233444555566666555221000 002333
Q ss_pred HhhcCCCCCEEEeecccCC
Q 041168 150 LAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 150 ~~~~l~~L~~L~Ls~N~l~ 168 (177)
.+...++|++|+|++|.|+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 4445566666666666654
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=9.3e-09 Score=82.20 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=76.6
Q ss_pred CcEEEEEccCCccccccCCCcc-cccCcCCcEEEccCCCCCCCCCCccc-----cCCccccc--cccccCCC----CCCh
Q 041168 53 GHVIRLDLTSSCLYGSINSSSS-LFQLVHLEWLVLSNNHFNFSEIPSEI-----KNLSRLTA--LSNPSFFG----QIPA 120 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~~-----~~l~~L~~--ls~n~l~~----~~p~ 120 (177)
.+++.|++++|.++..... . ...+++|+.|+|++|.++.. ....+ ...+.|++ |++|.+.. .++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLR--TLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHH--HTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHH--HHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 4788899998888643322 2 23456888999999988642 22222 23567888 88998863 2344
Q ss_pred hhhCCCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCCC
Q 041168 121 ELLELSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTAS 169 (177)
Q Consensus 121 ~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~g 169 (177)
.+..+++|++|+|++|.|.-.+ ...++..+...++|++|+|++|.|+.
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g-~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEG-LELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHH-HHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCCcCEEeCCCCCCCcHH-HHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 5577889999999999432100 01245667788899999999998874
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.46 E-value=2.3e-08 Score=83.52 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=59.2
Q ss_pred cccCcCCcEEEccCCC--CCCCCCCcccc-CCccccc--cccccCCC-CCChhhhCCCCCCEEeCCCCcCCcccCCCchh
Q 041168 75 LFQLVHLEWLVLSNNH--FNFSEIPSEIK-NLSRLTA--LSNPSFFG-QIPAELLELSDLESLDLSFNNFHLKLQGPSLA 148 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n~--l~~~~~p~~~~-~l~~L~~--ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p 148 (177)
+..+++|+.|+++++. +++. .+..+. .+++|++ +++|++.+ .++..+..+++|++|++++|.|. ...++
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~ 506 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDL-GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS----ERAIA 506 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHH-HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB----HHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHH-HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc----HHHHH
Confidence 4446666666665432 3322 222232 3677888 88888764 23445578899999999999432 12345
Q ss_pred HHhhcCCCCCEEEeecccCCCC
Q 041168 149 NLAEKLANLKVLHLGQVNTAST 170 (177)
Q Consensus 149 ~~~~~l~~L~~L~Ls~N~l~g~ 170 (177)
..+..+++|++|+|++|++++.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 5567889999999999998865
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=1.8e-07 Score=73.14 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=67.1
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCcccc-c--cccccCCCCCChhhhCCCCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLT-A--LSNPSFFGQIPAELLELSDLE 129 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~-~--ls~n~l~~~~p~~~~~l~~L~ 129 (177)
.+++.|++++|.++..... .|.++.+|+.+++.+| +... -+..|..+.+|+ . +.+ ++...-+.+|..+++|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~--aF~~~~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDF--TFAQKKYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TTCCEEECTTBCCCEECTT--TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred CCCeEEECCCCCcceecHh--hhhCCCCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 4678888888777754444 6777888888888776 5533 345677788787 6 555 56544556777888888
Q ss_pred EEeCCCCcCCcccCCCchhHHhhcCCCCCEEE
Q 041168 130 SLDLSFNNFHLKLQGPSLANLAEKLANLKVLH 161 (177)
Q Consensus 130 ~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~ 161 (177)
.++++.| .+ ...-+..|..+++|+.|+
T Consensus 301 ~l~l~~n--~i---~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGD--KI---TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSS--CC---CEECTTTTCTTCCCCEEE
T ss_pred EEEeCCC--cc---CccchhhhcCCcchhhhc
Confidence 8888777 33 233344677777887775
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=5.9e-08 Score=74.20 Aligned_cols=79 Identities=27% Similarity=0.278 Sum_probs=54.7
Q ss_pred ccCcCCcEEEccCCCCCCC-CCCccccCCccccc--cccccCCCCCChhhhCCC--CCCEEeCCCCcCCcccCCCchh--
Q 041168 76 FQLVHLEWLVLSNNHFNFS-EIPSEIKNLSRLTA--LSNPSFFGQIPAELLELS--DLESLDLSFNNFHLKLQGPSLA-- 148 (177)
Q Consensus 76 ~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~~~l~~~~~~~p-- 148 (177)
.+++.|+.|+|++|.+++. .+|..+..+++|+. |++|++.+. ..+..+. +|++|+|++|+ + .+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np--l---~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS--L---CDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST--T---GGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc--C---ccccCcc
Confidence 3577888999999988862 03455667888888 888888753 3344444 88888888884 4 33232
Q ss_pred -----HHhhcCCCCCEEE
Q 041168 149 -----NLAEKLANLKVLH 161 (177)
Q Consensus 149 -----~~~~~l~~L~~L~ 161 (177)
..+..+++|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 3467788888876
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=4.2e-08 Score=70.82 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=81.6
Q ss_pred CCcEEEEEccCC-ccccc----cCCCcccccCcCCcEEEccCCCCCCCC---CCccccCCccccc--cccccCCCC----
Q 041168 52 NGHVIRLDLTSS-CLYGS----INSSSSLFQLVHLEWLVLSNNHFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ---- 117 (177)
Q Consensus 52 ~~~l~~L~l~~n-~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~---- 117 (177)
...+++|++++| .+... +.. .+...++|++|+|++|.+.... +...+...+.|++ |++|.+...
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~--~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHH--HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 368999999999 88643 233 4566789999999999997420 2234555678888 999998742
Q ss_pred CChhhhCCCCCCEEeC--CCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 118 IPAELLELSDLESLDL--SFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 118 ~p~~~~~l~~L~~L~L--s~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
+...+...++|++|+| ++|.|.-++ ...+...+...++|++|+|++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g-~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHH-HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456777889999999 889432100 0124566777899999999999874
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.20 E-value=5.9e-07 Score=74.96 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=42.8
Q ss_pred CcEEEEEccCCccccc----cCCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCCCChhhh
Q 041168 53 GHVIRLDLTSSCLYGS----INSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQIPAELL 123 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~ 123 (177)
+++++|++++|.+++. ++. ....+++|++|++++|.+++. .++..+..+++|++ +++|.+.+ +|..+.
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred CCCCEEECccccccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 5677777777776543 222 234566777777777766521 02233345566666 66665542 344444
Q ss_pred CCCCCCEEeCC
Q 041168 124 ELSDLESLDLS 134 (177)
Q Consensus 124 ~l~~L~~L~Ls 134 (177)
.+++|++|+++
T Consensus 241 ~~~~L~~L~l~ 251 (592)
T 3ogk_B 241 AAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEEEC
T ss_pred hhhHHHhhccc
Confidence 44555555443
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=1.6e-06 Score=66.30 Aligned_cols=75 Identities=23% Similarity=0.319 Sum_probs=60.3
Q ss_pred CcEEEEEccCCcccc--ccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCc--cccc--cccccCCCCCCh------
Q 041168 53 GHVIRLDLTSSCLYG--SINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLS--RLTA--LSNPSFFGQIPA------ 120 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~--~L~~--ls~n~l~~~~p~------ 120 (177)
++|+.|+|++|.+++ .++. .+..+++|+.|+|++|.+++ + ..+..+. +|+. |++|.+.+.+|.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~--~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSS--IVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTT--HHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchh--HHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 689999999999987 4455 66789999999999999985 3 3344444 7888 999999876662
Q ss_pred -hhhCCCCCCEEe
Q 041168 121 -ELLELSDLESLD 132 (177)
Q Consensus 121 -~~~~l~~L~~L~ 132 (177)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 467899999986
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.11 E-value=3.6e-07 Score=76.24 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=57.7
Q ss_pred CcEEEEEccCCccccccCCCcccc-cCcCCcEEEccCC-CCCCCCCCccccCCccccc--cccccCCCCCChhhh----C
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLF-QLVHLEWLVLSNN-HFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELL----E 124 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~----~ 124 (177)
++++.|+++++.+++.... .+. .+++|++|++++| .++...++..+..+++|++ +++|.+.+..+..+. .
T Consensus 105 ~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4677777777776654444 443 4667777777766 3332102223335666666 666665543333332 4
Q ss_pred CCCCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168 125 LSDLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV 165 (177)
Q Consensus 125 l~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N 165 (177)
+++|++|++++|.-.+ ....++..+..+++|++|++++|
T Consensus 183 ~~~L~~L~l~~~~~~~--~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEV--SFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCC--CHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcC--CHHHHHHHHHhCCCCcEEecCCC
Confidence 5567777776662001 00112233344566666666665
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.00 E-value=4.6e-07 Score=75.59 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=45.5
Q ss_pred ccCcCCcEEEccCCCCCCCCCCccccC-Cccccc--cccccCCCCCChhh-hCCCCCCEEeCCCCcCCcccCCCc-hhHH
Q 041168 76 FQLVHLEWLVLSNNHFNFSEIPSEIKN-LSRLTA--LSNPSFFGQIPAEL-LELSDLESLDLSFNNFHLKLQGPS-LANL 150 (177)
Q Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~--ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~~~l~~~~~~-~p~~ 150 (177)
..+++|+.|++++ .++.. ....+.. +++|++ +++|.+.+.....+ ..+++|++|+|++|. + +.. +...
T Consensus 429 ~~~~~L~~L~L~~-~l~~~-~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~--~---~~~~~~~~ 501 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDK-VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP--F---GDKALLAN 501 (594)
T ss_dssp HHCTTCCEEECCS-SCCHH-HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS--C---CHHHHHHT
T ss_pred hhCCCccEEeecC-cccHH-HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC--C---cHHHHHHH
Confidence 3445555565544 33322 2223332 556666 66666653333333 456777777777773 2 222 2223
Q ss_pred hhcCCCCCEEEeecccCC
Q 041168 151 AEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 151 ~~~l~~L~~L~Ls~N~l~ 168 (177)
...+++|++|++++|+++
T Consensus 502 ~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGGGSSEEEEESSCCB
T ss_pred HHhCCCCCEEeeeCCCCC
Confidence 345677777777777663
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=5.5e-06 Score=64.58 Aligned_cols=84 Identities=12% Similarity=-0.011 Sum_probs=68.9
Q ss_pred CcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCC-EEeCCCCcCCcccCCCchhHHhhcC
Q 041168 78 LVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLE-SLDLSFNNFHLKLQGPSLANLAEKL 154 (177)
Q Consensus 78 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~~~l~~~~~~~p~~~~~l 154 (177)
++.|+.++|++|.++.. -...|..+.+|+. +.+| +...-+.+|..+.+|+ .+++..+ + ...-+..|..+
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---l---~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---V---TAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---C---CEECTTTTTTC
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---c---eEEchhhhhCC
Confidence 78999999999999853 3467899999999 8777 7655667899999999 9999885 2 23335679999
Q ss_pred CCCCEEEeecccCCC
Q 041168 155 ANLKVLHLGQVNTAS 169 (177)
Q Consensus 155 ~~L~~L~Ls~N~l~g 169 (177)
++|+.|+++.|.+..
T Consensus 297 ~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 297 DNLRYVLATGDKITT 311 (329)
T ss_dssp TTEEEEEECSSCCCE
T ss_pred ccCCEEEeCCCccCc
Confidence 999999999998874
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=2.4e-06 Score=68.02 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=37.5
Q ss_pred CCccccc--cccccCCCCCChhhh---CCCCCCEEeCCCCcCCcccCCC----chhHHhhcCCCCCEEEeecccCC
Q 041168 102 NLSRLTA--LSNPSFFGQIPAELL---ELSDLESLDLSFNNFHLKLQGP----SLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 102 ~l~~L~~--ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~~~l~~~~~----~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
.+++|++ |.+|.+....+..+. .+++|++|+|+.|. + .. .++..+..+++|+.|+|+.|.|+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~--L---~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV--L---TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC--C---BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC--C---ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 3567777 666666532222332 46678888888773 3 22 13333456678888888888765
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=3.8e-06 Score=60.45 Aligned_cols=95 Identities=14% Similarity=0.022 Sum_probs=68.0
Q ss_pred ccccCcCCcEEEccCC-CCCCCC---CCccccCCccccc--cccccCCCC----CChhhhCCCCCCEEeCCCCcCCcccC
Q 041168 74 SLFQLVHLEWLVLSNN-HFNFSE---IPSEIKNLSRLTA--LSNPSFFGQ----IPAELLELSDLESLDLSFNNFHLKLQ 143 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~--ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~~~l~~~ 143 (177)
.+...+.|++|+|++| .+.... +...+...++|++ |++|.+... +...+...++|++|+|++|.|.-++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g- 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG- 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-
Confidence 4567789999999999 886320 2344566788988 999998632 3345566789999999999532100
Q ss_pred CCchhHHhhcCCCCCEEEe--ecccCCC
Q 041168 144 GPSLANLAEKLANLKVLHL--GQVNTAS 169 (177)
Q Consensus 144 ~~~~p~~~~~l~~L~~L~L--s~N~l~g 169 (177)
...+...+...++|++|+| ++|.|..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 0124566788899999999 8898864
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.1e-05 Score=57.74 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=25.0
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCC
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNH 90 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~ 90 (177)
-+|+.||++++.++..--. .+..+++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD--HMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG--GGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHH--HhcCCCCCCEEEeCCCC
Confidence 3577788877777654444 56677777777777775
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.61 E-value=1.3e-05 Score=57.32 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=60.0
Q ss_pred cCCcEEEccCCCCCCCCCCccccCCccccc--ccccc-CCCCCChhhhCC----CCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 79 VHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPS-FFGQIPAELLEL----SDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 79 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
..|+.|+++++.++.. --..+..+++|++ |++|. ++..--..+..+ ++|++|+|+++. .+ +..=-..+
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~-~I---TD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG-NV---TDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT-TC---CHHHHHHG
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC-cC---CHHHHHHH
Confidence 4799999999998854 3456788999999 88885 543222335554 479999999983 23 32223457
Q ss_pred hcCCCCCEEEeeccc
Q 041168 152 EKLANLKVLHLGQVN 166 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N~ 166 (177)
.++++|++|+|+++.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 789999999999985
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.59 E-value=0.00011 Score=59.12 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=66.2
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCC-----CCCCCccccCCccccc--cccccCCCCCChhhhCCC
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFN-----FSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELS 126 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~ 126 (177)
+++.+.+. +.++..-.. .|.+++.|+.+.+.+|.+. .. -+..|..+++|+. +. +.+...-..+|..++
T Consensus 249 ~L~~i~lp-~~i~~I~~~--aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASR--AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIP-ESIRILGQGLLGGNR 323 (401)
T ss_dssp CCSEEEEE-TTCCEECTT--TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCC-TTCCEECTTTTTTCC
T ss_pred CccEEEeC-CCccEEChh--HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeC-CceEEEhhhhhcCCC
Confidence 34455553 334433344 6777888888888777654 12 2356777788887 55 445544456778888
Q ss_pred CCCEEeCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccCC
Q 041168 127 DLESLDLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNTA 168 (177)
Q Consensus 127 ~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 168 (177)
+|+.+.|..| + ...-...|..+ +|+.|++.+|.+.
T Consensus 324 ~L~~l~lp~~---l---~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 324 KVTQLTIPAN---V---TQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SCCEEEECTT---C---CEECTTSSSSS-CCCEEEECCSSCC
T ss_pred CccEEEECcc---c---cEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 8888888665 2 22234557777 8999999888765
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.24 E-value=0.00017 Score=57.22 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=55.5
Q ss_pred CcEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCcccc--CCccccc--ccc--ccCCCC-----CChh
Q 041168 53 GHVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIK--NLSRLTA--LSN--PSFFGQ-----IPAE 121 (177)
Q Consensus 53 ~~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~--~l~~L~~--ls~--n~l~~~-----~p~~ 121 (177)
++|+.|+++++.-. .++ .+ .+++|+.|++..+.+... ....+. .+++|++ |+. |...+. +...
T Consensus 172 P~L~~L~L~g~~~l-~l~---~~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIG---KK-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TTCCEEEEECCBTC-BCC---SC-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred CCCcEEEEeCCCCc-eec---cc-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 56667776665211 122 22 256677777766665422 112222 4666666 432 221111 1112
Q ss_pred h--hCCCCCCEEeCCCCcCCcccCCCchhHHhh---cCCCCCEEEeecccCCC
Q 041168 122 L--LELSDLESLDLSFNNFHLKLQGPSLANLAE---KLANLKVLHLGQVNTAS 169 (177)
Q Consensus 122 ~--~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~~---~l~~L~~L~Ls~N~l~g 169 (177)
+ ..+++|++|+|.+| .+ ....+..+. .+++|++|+|+.|.+.+
T Consensus 246 l~~~~~p~Lr~L~L~~~--~i---~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDA--EE---QNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp SCTTTCTTCCEEEEESC--TT---HHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HhcCCCCCcCEEeCCCC--CC---chHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2 24678888888877 33 222233333 46788899998888764
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.87 E-value=0.0011 Score=53.28 Aligned_cols=104 Identities=5% Similarity=-0.023 Sum_probs=75.5
Q ss_pred CcEEEEEccCCccc-----cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCC
Q 041168 53 GHVIRLDLTSSCLY-----GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLEL 125 (177)
Q Consensus 53 ~~l~~L~l~~n~l~-----~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l 125 (177)
.+|+.+++.++.+. ..... .|.++++|+.+.+.. .++.. -...|..+.+|+. +..+ +...-..+|..+
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~-~i~~I-~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE-SIRIL-GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT-TCCEE-CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred CCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC-ceEEE-hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 57899999887654 23344 789999999999984 46643 3467888999999 6444 654556788899
Q ss_pred CCCCEEeCCCCcCCcccCCCchhHHhhcCC-CCCEEEeecccC
Q 041168 126 SDLESLDLSFNNFHLKLQGPSLANLAEKLA-NLKVLHLGQVNT 167 (177)
Q Consensus 126 ~~L~~L~Ls~N~~~l~~~~~~~p~~~~~l~-~L~~L~Ls~N~l 167 (177)
+|+.+++.+| .. .......|..++ +++.|++..+.+
T Consensus 346 -~L~~l~l~~n--~~---~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 346 -GIKEVKVEGT--TP---PQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCCEEEECCS--SC---CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -CCCEEEEcCC--CC---cccccccccCCCCCccEEEeCHHHH
Confidence 9999999999 33 233344566664 788999887654
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.53 E-value=0.0044 Score=41.76 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=38.6
Q ss_pred cEEEccCCCCC-CCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcC
Q 041168 82 EWLVLSNNHFN-FSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNF 138 (177)
Q Consensus 82 ~~L~Ls~n~l~-~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~ 138 (177)
..++.+++.++ .. +|..+. .+|++ |++|+|....+..|..+++|++|+|++|++
T Consensus 11 ~~v~Cs~~~L~~~~-vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-LPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTT-SCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCcccc-CCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46788888876 12 665433 34666 889988865556678888899999998854
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.27 E-value=0.0012 Score=47.95 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=73.0
Q ss_pred CcEEEEEccCC-ccccc----cCCCcccccCcCCcEEEccCCCCCCC---CCCccccCCccccc--cccccCCCC----C
Q 041168 53 GHVIRLDLTSS-CLYGS----INSSSSLFQLVHLEWLVLSNNHFNFS---EIPSEIKNLSRLTA--LSNPSFFGQ----I 118 (177)
Q Consensus 53 ~~l~~L~l~~n-~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~--ls~n~l~~~----~ 118 (177)
..++.|+|++| .+... +.. .+..-++|+.|+|++|.|... .+...+..-+.|++ |++|.|... +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~--aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIE--AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHH--HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHH--HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 67999999985 77532 223 455567899999999998732 02233444567887 899988632 2
Q ss_pred ChhhhCCCCCCEEeCCCCcC-CcccCCC----chhHHhhcCCCCCEEEeecccC
Q 041168 119 PAELLELSDLESLDLSFNNF-HLKLQGP----SLANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 119 p~~~~~l~~L~~L~Ls~N~~-~l~~~~~----~~p~~~~~l~~L~~L~Ls~N~l 167 (177)
-+.+..-+.|++|+|++|.. .+ .. .+...+..-++|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~i---g~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVL---GNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCC---CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCc---CHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23455567799999986521 12 11 2456677788999999987754
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.12 E-value=0.014 Score=39.18 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=40.5
Q ss_pred EEEccCCccc-cccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCC
Q 041168 57 RLDLTSSCLY-GSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFF 115 (177)
Q Consensus 57 ~L~l~~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~ 115 (177)
.++.++++++ ..+|. .+ .+.|+.|+|++|.|+.. -+..|..+++|++ |.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~--~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT--AF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS--CC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC--CC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCee
Confidence 6777888876 24554 33 34799999999999954 3466788999998 8998775
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.75 E-value=0.033 Score=44.06 Aligned_cols=84 Identities=8% Similarity=0.052 Sum_probs=49.3
Q ss_pred ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
.+.++..|+.+.+.. .++.. -...|..+.+|+. +..+ +...-..+|..+.+|+.+.+..+ + ...-...|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s---v---~~I~~~aF 353 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITEL-PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS---V---TKIPESAF 353 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT---C---CBCCGGGG
T ss_pred ccccccccccccCCC-ccccc-CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc---c---CEEhHhHh
Confidence 455666666666643 33322 2345666777777 4432 44333456777778888777555 2 22223557
Q ss_pred hcCCCCCEEEeeccc
Q 041168 152 EKLANLKVLHLGQVN 166 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N~ 166 (177)
.++++|+.+++.++.
T Consensus 354 ~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 354 SNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEEESSCH
T ss_pred hCCCCCCEEEECCce
Confidence 778888888877654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.71 E-value=0.015 Score=45.71 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=58.6
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
.++.+.+..+ ++..-.. .+.++..|+.+.+..+ +... -...|..+.+|+. +.++.+...-..+|..+.+|+.+
T Consensus 241 ~L~~i~lp~~-v~~I~~~--aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSF--LLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SCCEEEECTT-CCEECTT--TTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred cceEEEcCCC-ccEeCcc--ccceeehhcccccccc-ceec-cccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3444544433 3322223 4556666777766543 3311 2245677778877 66666664445677888888888
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV 165 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N 165 (177)
.|..+ + ...-...|.++.+|+.+.+..+
T Consensus 316 ~lp~~---l---~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 316 TLPTA---L---KTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCTT---C---CEECTTTTTTCTTCCCCCCCTT
T ss_pred EcCcc---c---cEEHHHHhhCCCCCCEEEECCc
Confidence 88655 2 1112345777788887776543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.66 E-value=0.0081 Score=47.67 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=59.7
Q ss_pred ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
.+..+..|+.+.+..+ ++.. -...|..+.+|+. +.. .+...-..+|..+.+|+.+++..+ + ...-...|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~---l---~~I~~~aF 362 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS---L---RKIGANAF 362 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT---C---CEECTTTB
T ss_pred cccccccccccccccc-ccee-chhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc---c---cEehHHHh
Confidence 5777889999988765 4422 3466888888988 643 355344567889999999999776 2 22224568
Q ss_pred hcCCCCCEEEeecc
Q 041168 152 EKLANLKVLHLGQV 165 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N 165 (177)
..+++|+.+++..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 89999999999765
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.49 E-value=0.024 Score=44.87 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=61.4
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
.++.+.+. +.++..... .|.++.+|+.+.|..+ ++.. -...|..+.+|+. +..+ +...-..+|..+.+|+.+
T Consensus 289 ~L~~i~l~-~~i~~I~~~--aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPES--VFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCCEEECC-TTCCEECTT--TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred ccccccCC-CcccccCce--eecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 44555554 234433334 7888999999999764 5432 3467889999999 6543 554445689999999999
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecccC
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQVNT 167 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N~l 167 (177)
++.++. . .-..+.....|+.+.+..|.+
T Consensus 363 ~~~~~~--~------~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSR--S------QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCH--H------HHHTCBCCCCC----------
T ss_pred EECCce--e------ehhhhhccCCCCEEEeCCCCE
Confidence 998882 2 124566778899998877754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.28 E-value=0.006 Score=44.27 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=60.2
Q ss_pred cccCcCCcEEEccCC-CCCCCC---CCccccCCccccc--cccccCCC----CCChhhhCCCCCCEEeCCCCcCCcccCC
Q 041168 75 LFQLVHLEWLVLSNN-HFNFSE---IPSEIKNLSRLTA--LSNPSFFG----QIPAELLELSDLESLDLSFNNFHLKLQG 144 (177)
Q Consensus 75 l~~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~--ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~~~l~~~~ 144 (177)
+.+-+.|++|+|++| .|.... +-..+..-+.|+. |++|.+.. .+...+..-+.|++|+|+.|.|.-.+ .
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-L 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-H
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-H
Confidence 345578999999986 775210 2234555677888 99999863 23344556688999999999543200 0
Q ss_pred CchhHHhhcCCCCCEEEeecc
Q 041168 145 PSLANLAEKLANLKVLHLGQV 165 (177)
Q Consensus 145 ~~~p~~~~~l~~L~~L~Ls~N 165 (177)
..+.+.+..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 124455667788999999875
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.44 E-value=0.064 Score=42.39 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=56.1
Q ss_pred cEEEEEccCCccccccCCCcccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEE
Q 041168 54 HVIRLDLTSSCLYGSINSSSSLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESL 131 (177)
Q Consensus 54 ~l~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L 131 (177)
.++.+.+..+... .... .+..+..++.+......+. ...|..+.+|+. +.. .+...-..+|..+.+|+.+
T Consensus 254 ~l~~~~~~~~~~~-i~~~--~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 254 DLESISIQNNKLR-IGGS--LFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp SCCEEEECCTTCE-ECSC--TTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEE
T ss_pred cceeEEcCCCcce-eecc--ccccccccceeccCceeec----ccccccccccccccccc-ccceechhhhcCCCCCCEE
Confidence 3444555444322 2233 5666677777766554432 235666677777 433 3443334567778888888
Q ss_pred eCCCCcCCcccCCCchhHHhhcCCCCCEEEeecc
Q 041168 132 DLSFNNFHLKLQGPSLANLAEKLANLKVLHLGQV 165 (177)
Q Consensus 132 ~Ls~N~~~l~~~~~~~p~~~~~l~~L~~L~Ls~N 165 (177)
+|..+ + ...-...|..+.+|+.+.+..+
T Consensus 326 ~lp~~---v---~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 326 DLPYL---V---EEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCCTT---C---CEECTTTTTTCTTCCEECCCTT
T ss_pred EeCCc---c---cEEhHHhccCCCCCCEEEECcc
Confidence 88655 2 1222345777888888877665
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.67 E-value=0.26 Score=38.46 Aligned_cols=84 Identities=10% Similarity=0.037 Sum_probs=54.5
Q ss_pred ccccCcCCcEEEccCCCCCCCCCCccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCCcCCcccCCCchhHHh
Q 041168 74 SLFQLVHLEWLVLSNNHFNFSEIPSEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFNNFHLKLQGPSLANLA 151 (177)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~~~l~~~~~~~p~~~ 151 (177)
.+..+..|+.+.+..+ ++.. -...|..+..|+. +. +.+...-...|..+.+|+.+.+.++. + ...-...|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~-~~i~~i~~~aF~~c~~L~~i~l~~~~--i---~~I~~~aF 306 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFY-AKVKTVPYLLCSGCSNLTKVVMDNSA--I---ETLEPRVF 306 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEC-CCCSEECTTTTTTCTTCCEEEECCTT--C---CEECTTTT
T ss_pred cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccc-ccceeccccccccccccccccccccc--c---ceehhhhh
Confidence 4566677777777654 3322 2345666777777 43 33443334577889999999998773 3 22224568
Q ss_pred hcCCCCCEEEeecc
Q 041168 152 EKLANLKVLHLGQV 165 (177)
Q Consensus 152 ~~l~~L~~L~Ls~N 165 (177)
..+.+|+.+.|..+
T Consensus 307 ~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 307 MDCVKLSSVTLPTA 320 (379)
T ss_dssp TTCTTCCEEECCTT
T ss_pred cCCCCCCEEEcCcc
Confidence 88999999998654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.40 E-value=22 Score=22.12 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=22.8
Q ss_pred ccccCCccccc--cccccCCCCCChhhhCCCCCCEEeCCCC
Q 041168 98 SEIKNLSRLTA--LSNPSFFGQIPAELLELSDLESLDLSFN 136 (177)
Q Consensus 98 ~~~~~l~~L~~--ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 136 (177)
..|..+.+|+. +.. .+...-..+|..+.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 45666777776 433 233333456777777777776544
No 166
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=23.97 E-value=62 Score=15.64 Aligned_cols=20 Identities=30% Similarity=1.069 Sum_probs=11.9
Q ss_pred CCCCCCC-CCCCCCCccceEEEc
Q 041168 28 VASWSQE-EENRDCCLWDGIKCN 49 (177)
Q Consensus 28 l~~W~~~-~~~~~~C~w~gv~c~ 49 (177)
++.|.++ ++.++|| +|..|-
T Consensus 3 ipkwkgcvnrhgdcc--eglecw 23 (37)
T 3s3x_D 3 IPKWKGCVNRHGDCC--EGLECW 23 (37)
T ss_dssp BCTTCBCTTCTTCBC--TTEEEE
T ss_pred cccccchhccccchh--hhHHHH
Confidence 5677644 4556777 456664
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=23.10 E-value=28 Score=15.09 Aligned_cols=10 Identities=30% Similarity=1.089 Sum_probs=7.0
Q ss_pred CCCccceEEE
Q 041168 39 DCCLWDGIKC 48 (177)
Q Consensus 39 ~~C~w~gv~c 48 (177)
.-|+|.|..-
T Consensus 6 gacswrglen 15 (23)
T 3ox7_P 6 GACSWRGLEN 15 (26)
T ss_pred cccccccchh
Confidence 4688888653
Done!