BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041172
MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAA
AHRFSDTNSADDQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSMEDQFDDLFMPHGEGSF
LGMFTSNLFHHDFNFQQDLAL

High Scoring Gene Products

Symbol, full name Information P value
SIB1
sigma factor binding protein 1
protein from Arabidopsis thaliana 3.2e-10
SIB2
AT2G41180
protein from Arabidopsis thaliana 2.9e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041172
        (141 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2103580 - symbol:SIB1 "sigma factor binding pr...   145  3.2e-10   1
TAIR|locus:2063270 - symbol:SIB2 "AT2G41180" species:3702...   117  2.9e-07   1


>TAIR|locus:2103580 [details] [associations]
            symbol:SIB1 "sigma factor binding protein 1" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0071482 "cellular response to light
            stimulus" evidence=IEP] [GO:0009816 "defense response to bacterium,
            incompatible interaction" evidence=IMP] [GO:0000165 "MAPK cascade"
            evidence=RCA] [GO:0006995 "cellular response to nitrogen
            starvation" evidence=RCA] [GO:0009627 "systemic acquired
            resistance" evidence=RCA] [GO:0009697 "salicylic acid biosynthetic
            process" evidence=RCA] [GO:0009814 "defense response, incompatible
            interaction" evidence=RCA] [GO:0009862 "systemic acquired
            resistance, salicylic acid mediated signaling pathway"
            evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
            metabolic process" evidence=RCA] [GO:0031347 "regulation of defense
            response" evidence=RCA] [GO:0031348 "negative regulation of defense
            response" evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0045088 "regulation of innate immune response"
            evidence=RCA] [GO:0050832 "defense response to fungus"
            evidence=RCA] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0009816 EMBL:AL390921 GO:GO:0071482 InterPro:IPR008889
            Pfam:PF05678 EMBL:AF224762 EMBL:AY042831 EMBL:BT002607
            IPI:IPI00516718 PIR:T51259 RefSeq:NP_191230.1 UniGene:At.9832
            IntAct:Q9LDH1 STRING:Q9LDH1 EnsemblPlants:AT3G56710.1 GeneID:824838
            KEGG:ath:AT3G56710 GeneFarm:2879 TAIR:At3g56710 eggNOG:NOG272467
            HOGENOM:HOG000115137 InParanoid:Q9LDH1 OMA:TCASKFR PhylomeDB:Q9LDH1
            ProtClustDB:CLSN2684206 Genevestigator:Q9LDH1 Uniprot:Q9LDH1
        Length = 151

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 44/116 (37%), Positives = 63/116 (54%)

Query:    23 KDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQ 82
             K +KV YIS+P++ +TCASKFR LVQELTG+D+  D         +S D   SP     +
Sbjct:    38 KPIKVRYISNPMRVQTCASKFRELVQELTGQDA-VDLQPEPIYSPSSDDHNLSPPA---E 93

Query:    83 GLACAVSGDDHQQ--GDLRSSPSMED-QFDDLFMPHG-EGSFLGMFTSNLFH-HDF 133
              LA  V    HQ+  G+ R S   E    +D+F+P      F G F++  ++ +DF
Sbjct:    94 NLAPRVL---HQEPFGE-RDSDCYEPLNAEDMFLPDQMSAGFSGFFSNGFYNVNDF 145


>TAIR|locus:2063270 [details] [associations]
            symbol:SIB2 "AT2G41180" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009627 "systemic acquired resistance"
            evidence=RCA] [GO:0031347 "regulation of defense response"
            evidence=RCA] GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
            EMBL:AC004261 InterPro:IPR008889 Pfam:PF05678 HOGENOM:HOG000115137
            ProtClustDB:CLSN2684206 EMBL:AY057686 EMBL:AY099785 EMBL:BT000291
            IPI:IPI00542912 PIR:T02101 RefSeq:NP_030663.1 UniGene:At.12552
            UniGene:At.66337 EnsemblPlants:AT2G41180.1 GeneID:818717
            KEGG:ath:AT2G41180 GeneFarm:2880 TAIR:At2g41180 eggNOG:NOG307499
            InParanoid:O80669 OMA:PCESEMN PhylomeDB:O80669
            Genevestigator:O80669 Uniprot:O80669
        Length = 141

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query:    23 KDVKVVYISSPVKFETCASKFRALVQELTGKDSDAD 58
             K +KV YIS+P++ ETC SKFR LVQELTG+D+ AD
Sbjct:    35 KPIKVRYISNPMRVETCPSKFRELVQELTGQDA-AD 69


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       141   0.00091  102 3  11 22  0.43    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  139 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Total cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Start:  Fri May 10 01:11:24 2013   End:  Fri May 10 01:11:25 2013

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