BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041172
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDH1|SIB1_ARATH Sigma factor binding protein 1, chloroplastic OS=Arabidopsis
thaliana GN=SIB1 PE=1 SV=1
Length = 151
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 23 KDVKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQ 82
K +KV YIS+P++ +TCASKFR LVQELTG+D+ D +S D SP +
Sbjct: 38 KPIKVRYISNPMRVQTCASKFRELVQELTGQDA-VDLQPEPIYSPSSDDHNLSPPA---E 93
Query: 83 GLACAVSGDDHQQ--GDLRSSPSMEDQFDDLFMPHGEGSFLGMFTSNLFHH 131
LA V HQ+ G+ S +D+F+P + F SN F++
Sbjct: 94 NLAPRVL---HQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSGFFSNGFYN 141
>sp|O80669|SIB2_ARATH Sigma factor binding protein 2, chloroplastic OS=Arabidopsis
thaliana GN=SIB2 PE=2 SV=1
Length = 141
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 23 KDVKVVYISSPVKFETCASKFRALVQELTGKDS 55
K +KV YIS+P++ ETC SKFR LVQELTG+D+
Sbjct: 35 KPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67
>sp|P00321|FLAV_MEGEL Flavodoxin OS=Megasphaera elsdenii PE=1 SV=1
Length = 137
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 25 VKVVYISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGL 84
V++VY S E A++ A V K + AD + RF DTN DD S V++ L
Sbjct: 2 VEIVYWSGTGNTEAMANEIEAAV-----KAAGADVESVRFEDTN-VDDVASKDVIL---L 52
Query: 85 ACAVSGDDHQQGDLRSSPSMEDQFDDLFMPHGEGSFLGMFTS 126
C G + + + +E F DL P +G +G+F S
Sbjct: 53 GCPAMGSEELEDSV-----VEPFFTDL-APKLKGKKVGLFGS 88
>sp|Q1T7C0|CENPL_CHICK Centromere protein L OS=Gallus gallus GN=CENPL PE=1 SV=1
Length = 344
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 47 VQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGLACAVSGDD 92
+ EL G + D A + S +S +NS + ++ G C V+GDD
Sbjct: 124 LPELRGSEQDPAAVLVQLSLRSSVSPKNSEEKLIWSGWFCCVAGDD 169
>sp|P53111|ARI1_YEAST NADPH-dependent aldehyde reductase ARI1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ARI1 PE=1 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 18 YKRCKKDVKVV-YISSPVKFETCASKFRALVQELTGKDSDADAAAHRFSDTNSADDQNSP 76
+K+ K++K+V + +SP FET + L + G S +A +DT
Sbjct: 72 FKKHGKEIKIVLHTASPFHFETTNFEKDLLTPAVNGTKSILEAIKKYAADT-------VE 124
Query: 77 KVVVDQGLACAVSGDDHQQGDL 98
KV+V A V+ D +GDL
Sbjct: 125 KVIVTSSTAALVTPTDMNKGDL 146
>sp|P18494|GLN3_YEAST Nitrogen regulatory protein GLN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GLN3 PE=1 SV=2
Length = 730
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 46 LVQELTGKDSDADAAAHRFSDTNSADDQNSPKVVVDQGLACAVSGDDHQQGDLRSSPSME 105
L Q+L +S++ + H+F++ S+D + K D +S D+ +G + S ++
Sbjct: 661 LSQQLQNSESNSFISNHKFNNRLSSDSTSPIKYEADVSAGGKISEDNSTKGSSKESSAIA 720
Query: 106 DQFDDL 111
D+ D L
Sbjct: 721 DELDWL 726
>sp|Q6CVS2|AMN1_KLULA Antagonist of mitotic exit network protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=AMN1 PE=3 SV=1
Length = 424
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 18 YKRCKKDVKVVYISSPVKFETCASKFRALVQELT 51
YKR K + ISSPVKF T A+ A QEL+
Sbjct: 53 YKRKTKSLDDDLISSPVKFGTDANVLNAEFQELS 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,272,297
Number of Sequences: 539616
Number of extensions: 2181315
Number of successful extensions: 8169
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8163
Number of HSP's gapped (non-prelim): 28
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)