Query 041172
Match_columns 141
No_of_seqs 53 out of 55
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efo_A Serine/threonine-protei 39.6 26 0.00088 24.7 3.2 18 39-56 35-52 (94)
2 3ib7_A ICC protein; metallopho 36.4 31 0.0011 25.6 3.5 50 3-52 2-62 (330)
3 1dml_A DNA polymerase processi 34.6 15 0.00051 31.5 1.6 30 22-51 250-282 (319)
4 2qn6_B Translation initiation 22.8 63 0.0021 22.4 2.8 26 25-50 44-70 (93)
5 1yz7_A Probable translation in 20.3 66 0.0022 24.9 2.8 30 21-50 123-153 (188)
6 2p9x_A Hypothetical protein PH 18.6 59 0.002 23.7 2.0 19 38-56 44-62 (99)
7 4dzo_A Mitotic spindle assembl 17.3 63 0.0022 23.5 1.9 21 37-57 28-48 (123)
8 2o35_A Hypothetical protein DU 17.3 57 0.002 24.0 1.7 18 36-53 12-29 (105)
9 3mcb_A Nascent polypeptide-ass 16.6 90 0.0031 20.0 2.3 38 1-41 2-39 (54)
10 3fyb_A Protein of unknown func 16.4 62 0.0021 23.8 1.7 19 35-53 10-28 (104)
No 1
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=39.57 E-value=26 Score=24.70 Aligned_cols=18 Identities=33% Similarity=0.231 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHhCCCCC
Q 041172 39 CASKFRALVQELTGKDSD 56 (141)
Q Consensus 39 ~As~FRalVQeLTGkds~ 56 (141)
....|++.|+|-||-...
T Consensus 35 tv~~~ke~V~eqTgIp~~ 52 (94)
T 4efo_A 35 TATIFHELVYKQTKIISS 52 (94)
T ss_dssp BHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHHhCCCHH
Confidence 488999999999996543
No 2
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=36.43 E-value=31 Score=25.64 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=26.5
Q ss_pred cccchhhhccc--ccccccCCCCccEEEEecCceEEe---------echhhHHHHHHHHhC
Q 041172 3 VLGVQQMKIRK--HNNYYKRCKKDVKVVYISSPVKFE---------TCASKFRALVQELTG 52 (141)
Q Consensus 3 ~lg~~~~k~~~--~~~~~k~~k~~iKVvyI~np~~Vk---------T~As~FRalVQeLTG 52 (141)
+.|+++.|..- .-...+..++++||++||..-+-. .....|+++++.+--
T Consensus 2 ~~g~~~~~~~~~~~l~~~~~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~ 62 (330)
T 3ib7_A 2 AMGIRNSKAYVEHRLRAAEHPRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQ 62 (330)
T ss_dssp --------------CEECSSCCCSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHH
T ss_pred CccccCcchhhhhhcccccCCCCCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHh
Confidence 35665544321 112334567789999999987632 125678888888764
No 3
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=34.58 E-value=15 Score=31.54 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=17.0
Q ss_pred CCccEEEEecCc---eEEeechhhHHHHHHHHh
Q 041172 22 KKDVKVVYISSP---VKFETCASKFRALVQELT 51 (141)
Q Consensus 22 k~~iKVvyI~np---~~VkT~As~FRalVQeLT 51 (141)
+-..|.||=++. --+.-+..+||+|||+|-
T Consensus 250 ~~~~~tv~G~~~~r~F~laLed~~fr~vlqklk 282 (319)
T 1dml_A 250 AANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQ 282 (319)
T ss_dssp --CTTBCEEESTTSCEEEEESSCCHHHHHHHTT
T ss_pred cccceEEeccCCCcceEEEeccccHHHHHHHHh
Confidence 345667773333 333333335999999984
No 4
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=22.78 E-value=63 Score=22.39 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=19.0
Q ss_pred cEEEEecCceEEe-echhhHHHHHHHH
Q 041172 25 VKVVYISSPVKFE-TCASKFRALVQEL 50 (141)
Q Consensus 25 iKVvyI~np~~Vk-T~As~FRalVQeL 50 (141)
|||-||..|.|+- |.+...+...+.|
T Consensus 44 vkI~~vgaP~Y~i~~~~~D~k~ge~~L 70 (93)
T 2qn6_B 44 IKIYTIGAPRYRVDVVGTNPKEASEAL 70 (93)
T ss_dssp EEEEESSTTEEEEEEEESCHHHHHHHH
T ss_pred EEEEEEcCCeEEEEEEecCHHHHHHHH
Confidence 9999999999986 4566655544443
No 5
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=20.35 E-value=66 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCCccEEEEecCceEEe-echhhHHHHHHHH
Q 041172 21 CKKDVKVVYISSPVKFE-TCASKFRALVQEL 50 (141)
Q Consensus 21 ~k~~iKVvyI~np~~Vk-T~As~FRalVQeL 50 (141)
..-+|||-||+.|.|+- |.+......++.|
T Consensus 123 ~~~~ikI~lvgaP~Y~i~~~~~Dkk~g~~~L 153 (188)
T 1yz7_A 123 KDVEVKFTYLGAPRYRIDITAPDYYKAEEVL 153 (188)
T ss_dssp TTCEEEEEECSTTEEEEEEEESSHHHHHHHH
T ss_pred CCCcEEEEEEcCcEEEEEEeeCCHHHHHHHH
Confidence 34579999999999987 4566666555444
No 6
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=18.65 E-value=59 Score=23.74 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.0
Q ss_pred echhhHHHHHHHHhCCCCC
Q 041172 38 TCASKFRALVQELTGKDSD 56 (141)
Q Consensus 38 T~As~FRalVQeLTGkds~ 56 (141)
-|+..|++.|.+|.|--|.
T Consensus 44 eDP~kFkeaV~~LFGEysa 62 (99)
T 2p9x_A 44 DDPQKFKEAVSKLFGEYSA 62 (99)
T ss_dssp HCHHHHHHHHHHHHCHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 4889999999999996553
No 7
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=17.30 E-value=63 Score=23.46 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.8
Q ss_pred eechhhHHHHHHHHhCCCCCc
Q 041172 37 ETCASKFRALVQELTGKDSDA 57 (141)
Q Consensus 37 kT~As~FRalVQeLTGkds~~ 57 (141)
++-..+||+.|-.|||=--+.
T Consensus 28 ~~ks~eFReav~~LlGykId~ 48 (123)
T 4dzo_A 28 QTKIQEFRKACYTLTGYQIDI 48 (123)
T ss_dssp HHHHHHHHHHHHHHHSEEEEE
T ss_pred HHHHHHHHHHHHHHhCeEEEE
Confidence 456789999999999965544
No 8
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=17.26 E-value=57 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.4
Q ss_pred EeechhhHHHHHHHHhCC
Q 041172 36 FETCASKFRALVQELTGK 53 (141)
Q Consensus 36 VkT~As~FRalVQeLTGk 53 (141)
.+..|+-||.||+.|-.+
T Consensus 12 ~eleAAaFRRLv~HL~~r 29 (105)
T 2o35_A 12 TAFEAAVFRRLLEHLRER 29 (105)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 345689999999999844
No 9
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=16.57 E-value=90 Score=20.00 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=19.9
Q ss_pred CccccchhhhcccccccccCCCCccEEEEecCceEEeechh
Q 041172 1 MDVLGVQQMKIRKHNNYYKRCKKDVKVVYISSPVKFETCAS 41 (141)
Q Consensus 1 m~~lg~~~~k~~~~~~~~k~~k~~iKVvyI~np~~VkT~As 41 (141)
|-+||+++..+=-. ..=++.+. -+.+|++|..-+..++
T Consensus 2 l~KLglk~v~gI~r--Vti~K~~~-~lf~i~~P~V~ksp~s 39 (54)
T 3mcb_A 2 MSKLGLRQVTGVTR--VTIRKSKN-ILFVITKPDVYKSPAS 39 (54)
T ss_dssp GGGGTCEECTTEEE--EEEESSSS-EEEEESSCEEEECTTS
T ss_pred ccccCCEECCCEEE--EEEEeCCC-EEEEECCCcEEEcCCC
Confidence 45677765443111 11111222 5778999987765443
No 10
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=16.43 E-value=62 Score=23.81 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=14.6
Q ss_pred EEeechhhHHHHHHHHhCC
Q 041172 35 KFETCASKFRALVQELTGK 53 (141)
Q Consensus 35 ~VkT~As~FRalVQeLTGk 53 (141)
.++..|+-||.||+.|-.+
T Consensus 10 ~~eleAAaFRrL~~HL~~r 28 (104)
T 3fyb_A 10 KTEMEAAAFRHLLRHLDEH 28 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3455799999999999443
Done!