Query 041172
Match_columns 141
No_of_seqs 53 out of 55
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 07:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041172.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041172hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1es6a2 b.31.1.1 (A:201-321) E 34.7 4.3 0.00031 28.6 0.2 34 23-57 45-78 (121)
2 d1q8ka2 d.58.51.1 (A:186-302) 31.8 19 0.0014 24.5 3.3 30 21-50 35-65 (117)
3 d2qn6b1 d.58.51.1 (B:176-264) 28.4 19 0.0014 23.2 2.7 28 23-50 40-68 (89)
4 d2hy1a1 d.159.1.11 (A:10-265) 23.6 33 0.0024 23.2 3.4 31 21-51 1-40 (256)
5 d1fzqa_ c.37.1.8 (A:) ADP-ribo 23.3 16 0.0012 23.3 1.5 31 19-55 11-41 (176)
6 d1l8na2 d.92.2.2 (A:4-142) alp 22.3 23 0.0017 23.5 2.3 36 22-57 17-53 (139)
7 d2acva1 c.87.1.10 (A:3-463) Tr 16.9 24 0.0017 24.7 1.4 12 41-52 450-461 (461)
8 d1l7ba_ c.15.1.2 (A:) NAD+-dep 15.2 25 0.0018 22.4 1.0 18 39-56 70-87 (92)
9 d1t6sa1 a.4.5.60 (A:1-85) Segr 13.6 1.2E+02 0.009 18.2 4.1 30 22-52 56-85 (85)
10 d1iz5a1 d.131.1.2 (A:2-120) Pr 13.0 70 0.0051 20.3 2.9 19 38-56 7-25 (119)
No 1
>d1es6a2 b.31.1.1 (A:201-321) EV matrix protein {Ebola virus [TaxId: 205488]}
Probab=34.66 E-value=4.3 Score=28.60 Aligned_cols=34 Identities=35% Similarity=0.380 Sum_probs=17.4
Q ss_pred CccEEEEecCceEEeechhhHHHHHHHHhCCCCCc
Q 041172 23 KDVKVVYISSPVKFETCASKFRALVQELTGKDSDA 57 (141)
Q Consensus 23 ~~iKVvyI~np~~VkT~As~FRalVQeLTGkds~~ 57 (141)
..+|||-| .|.+--.--+-=.-||++||||.-..
T Consensus 45 qd~kivpi-dptkni~gievpellv~~ltgkk~~~ 78 (121)
T d1es6a2 45 QDFKIVPI-DPTKNIMGIEVPETLVLKLTGKKVTS 78 (121)
T ss_dssp GGCEEEEE-EGGGTEEEEECCHHHHHHHTC-----
T ss_pred ccceeeec-CCccceeeeccHHHHHHHHhcCcccC
Confidence 46799999 46431111111236999999997643
No 2
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.79 E-value=19 Score=24.49 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=23.5
Q ss_pred CCCccEEEEecCceEEe-echhhHHHHHHHH
Q 041172 21 CKKDVKVVYISSPVKFE-TCASKFRALVQEL 50 (141)
Q Consensus 21 ~k~~iKVvyI~np~~Vk-T~As~FRalVQeL 50 (141)
...+|||-||..|.|+- |.+..|+.-.+.|
T Consensus 35 e~~~I~I~~igaP~Y~i~v~a~D~k~g~~~l 65 (117)
T d1q8ka2 35 ENMPIKINLIAPPRYVMTTTTLERTEGLSVL 65 (117)
T ss_dssp TTBCEEEEEEETTEEEEEEECSSHHHHHHHH
T ss_pred CCCcEEEEEECCCeEEEEEecCCHHHHHHHH
Confidence 45689999999999976 5788888655554
No 3
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=28.44 E-value=19 Score=23.18 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=22.0
Q ss_pred CccEEEEecCceEEe-echhhHHHHHHHH
Q 041172 23 KDVKVVYISSPVKFE-TCASKFRALVQEL 50 (141)
Q Consensus 23 ~~iKVvyI~np~~Vk-T~As~FRalVQeL 50 (141)
.+|||-||..|.|+- +.+..|+...+-|
T Consensus 40 ~~i~i~~igaP~Yri~v~a~D~k~ae~~l 68 (89)
T d2qn6b1 40 LNIKIYTIGAPRYRVDVVGTNPKEASEAL 68 (89)
T ss_dssp EEEEEEESSTTEEEEEEEESCHHHHHHHH
T ss_pred ccEEEEEecCCeEEEEEEeCCHHHHHHHH
Confidence 469999999999876 5788887766554
No 4
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.56 E-value=33 Score=23.20 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=20.9
Q ss_pred CCCccEEEEecCceEEeec---------hhhHHHHHHHHh
Q 041172 21 CKKDVKVVYISSPVKFETC---------ASKFRALVQELT 51 (141)
Q Consensus 21 ~k~~iKVvyI~np~~VkT~---------As~FRalVQeLT 51 (141)
+|+.+||++||.+=+.... ...|+++++.+-
T Consensus 1 p~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~ 40 (256)
T d2hy1a1 1 PRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLN 40 (256)
T ss_dssp CCCSEEEEEECCCCBC----------CHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeeCccCCCCcccccCcCHHHHHHHHHHHHH
Confidence 4679999999998653321 345888887763
No 5
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}
Probab=23.31 E-value=16 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=23.8
Q ss_pred cCCCCccEEEEecCceEEeechhhHHHHHHHHhCCCC
Q 041172 19 KRCKKDVKVVYISSPVKFETCASKFRALVQELTGKDS 55 (141)
Q Consensus 19 k~~k~~iKVvyI~np~~VkT~As~FRalVQeLTGkds 55 (141)
...++.+||+.|..|--=|| +|+++|+|..-
T Consensus 11 ~~~~~~~kI~vvG~~~vGKS------sLi~~l~~~~~ 41 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKT------TLLKQLASEDI 41 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHH------HHHHHHCCSCC
T ss_pred CCCCCEEEEEEECCCCCCHH------HHHHHHhcCCC
Confidence 44567899999998855555 78899988654
No 6
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.28 E-value=23 Score=23.49 Aligned_cols=36 Identities=3% Similarity=0.131 Sum_probs=26.7
Q ss_pred CCccEEEEecCc-eEEeechhhHHHHHHHHhCCCCCc
Q 041172 22 KKDVKVVYISSP-VKFETCASKFRALVQELTGKDSDA 57 (141)
Q Consensus 22 k~~iKVvyI~np-~~VkT~As~FRalVQeLTGkds~~ 57 (141)
+..+.+|+..+. -.+++-|.+++.-++++||++-.+
T Consensus 17 ~~~~~~i~~~~~sp~~~~Aa~eL~~~l~~~~G~~~~i 53 (139)
T d1l8na2 17 RLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQV 53 (139)
T ss_dssp CCCCCEEEECCCSHHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred hhcccEEEECCCChHHHHHHHHHHHHHHHHhCCCCce
Confidence 334556665443 357889999999999999998655
No 7
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=16.94 E-value=24 Score=24.74 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.0
Q ss_pred hhHHHHHHHHhC
Q 041172 41 SKFRALVQELTG 52 (141)
Q Consensus 41 s~FRalVQeLTG 52 (141)
+.++.+|+||||
T Consensus 450 ~~~~~~~~~~~~ 461 (461)
T d2acva1 450 ISVGKLIDDITG 461 (461)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 446678888887
No 8
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}
Probab=15.22 E-value=25 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHhCCCCC
Q 041172 39 CASKFRALVQELTGKDSD 56 (141)
Q Consensus 39 ~As~FRalVQeLTGkds~ 56 (141)
+...|.++++..+|+...
T Consensus 70 sE~~f~~~l~~~~~~~~~ 87 (92)
T d1l7ba_ 70 TEEELYRLLEARTGKKAE 87 (92)
T ss_dssp EHHHHHHHHHHHHCSCSS
T ss_pred cHHHHHHHHHhCCCCCHH
Confidence 467999999999999875
No 9
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=13.58 E-value=1.2e+02 Score=18.24 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.0
Q ss_pred CCccEEEEecCceEEeechhhHHHHHHHHhC
Q 041172 22 KKDVKVVYISSPVKFETCASKFRALVQELTG 52 (141)
Q Consensus 22 k~~iKVvyI~np~~VkT~As~FRalVQeLTG 52 (141)
..+|.|+.+.+--++.|.+ +|...|++|.|
T Consensus 56 ~~g~el~~~~~gy~~~tk~-e~~~~v~kll~ 85 (85)
T d1t6sa1 56 GRTFRIHAIAGGYRFLTEP-EFADLVRQLLA 85 (85)
T ss_dssp TCSEEEEEETTEEEEEECG-GGHHHHHHHHS
T ss_pred CCcEEEEEECCEEEEEEhH-HHHHHHHHHhC
Confidence 4679999998876666655 59999999876
No 10
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=13.03 E-value=70 Score=20.32 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.4
Q ss_pred echhhHHHHHHHHhCCCCC
Q 041172 38 TCASKFRALVQELTGKDSD 56 (141)
Q Consensus 38 T~As~FRalVQeLTGkds~ 56 (141)
.+|..||.+++-|-.--.+
T Consensus 7 ~~a~~fk~i~~~l~~l~~e 25 (119)
T d1iz5a1 7 EGAKEFAQLIDTASKLIDE 25 (119)
T ss_dssp ECHHHHHHHHHHHTSSCSE
T ss_pred CCHHHHHHHHHHHHHHhce
Confidence 5899999999999776443
Done!