BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041173
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|B Chain B, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|C Chain C, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|D Chain D, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|E Chain E, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|F Chain F, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|G Chain G, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
pdb|3P1M|H Chain H, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex
With Iron- Sulfur Cluster
Length = 132
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 12/87 (13%)
Query: 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI-- 86
S +D + V F ++DGE K VG S+L+ V EN+++++G ACEG+LACSTCH+I
Sbjct: 2 SSSEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 61
Query: 87 --------KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 62 DHIYEKLDAITDEENDMLDLAYGLTDR 88
>pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 123
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D + V F ++DGE K VG S+L+ V EN+++++G ACEG+LACSTCH+I
Sbjct: 3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHI 62
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 63 YEKLDAITDEENDMLDLAYGLTDR 86
>pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
Length = 114
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI---- 86
+D + V F ++DGE K VG S+L+ V EN+++++G ACEG+LACSTCH+I
Sbjct: 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDH 61
Query: 87 ------KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 62 IYEKLDAITDEENDMLDLAYGLTDR 86
>pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin
Length = 128
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 12/87 (13%)
Query: 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI-- 86
S +D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 1 SSSEDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFE 60
Query: 87 --------KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 61 QHIFEKLEAITDEENDMLDLAYGLTDR 87
>pdb|1CJE|A Chain A, Adrenodoxin From Bovine
pdb|1CJE|B Chain B, Adrenodoxin From Bovine
pdb|1CJE|C Chain C, Adrenodoxin From Bovine
pdb|1CJE|D Chain D, Adrenodoxin From Bovine
Length = 127
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 3 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 62
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 63 FEKLEAITDEENDMLDLAYGLTDR 86
>pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin
Length = 128
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 4 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 63
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 64 FEKLEAITDEENDMLDLAYGLTDR 87
>pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
pdb|1E6E|D Chain D, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL
P450 Systems
Length = 128
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 4 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 63
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 64 FEKLEAITDEENDMLDLAYGLTDR 87
>pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized)
pdb|1AYF|B Chain B, Bovine Adrenodoxin (oxidized)
Length = 105
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 1 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHI 60
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 61 FEKLEAITDEENDMLDLAYGLTDR 84
>pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
pdb|2BT6|B Chain B, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
Length = 108
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Query: 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI------ 86
D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 5 DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIF 64
Query: 87 ----KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 65 EKLEAITDEENDMLDLAYGLTDR 87
>pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
pdb|2Y5C|B Chain B, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With
2fe2s Cluster
Length = 109
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHV 85
+ D+VNV F D+ G+ + VG ++L + ++LEGACE SLACSTCHV
Sbjct: 1 MASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHV 54
>pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C
And Adrenodoxin
Length = 105
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI 86
+D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 1 EDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI 55
>pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
pdb|2WLB|B Chain B, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of
Schizosaccharomyces Pombe Mitochondria
Length = 103
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI 86
+ V F +G E I+ G S+L+ H N+I+LEGACEGS+ACSTCHVI
Sbjct: 4 IKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVI 53
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV-IKITWPEL 93
M + F D GE + ++V G +++EA N I +E C G+ AC+TCHV + W E
Sbjct: 21 MAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWRE- 79
Query: 94 DGVRLAFPAATRDFAVD-GYVPKPH 117
++ P+ + +D GY +P+
Sbjct: 80 ---KVGGPSPMEEDMLDFGYDVRPN 101
>pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|D Chain D, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 68
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 12/60 (20%)
Query: 58 SMLEAVHENDIELEG--ACEGSLACSTCHVI----------KITWPELDGVRLAFPAATR 105
S+L+ V EN+++++G ACEG+LACSTCH+I IT E D + LA+ R
Sbjct: 1 SLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDR 60
>pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin
(Fdxb) From Pseudomonas Putida Jcm 20004
Length = 113
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 47 EEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI 86
E ++V G ++LE H++ IE+E AC G AC+TCH I
Sbjct: 15 EGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCI 54
>pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of
Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From
Pseudomonas
Length = 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHV 85
V + DG + + V G+S+++A N I ++ G C GS +C+TCHV
Sbjct: 3 VVYVSHDGTRRQLDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHV 50
>pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1OQQ|B Chain B, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A
[2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a
Resolution
pdb|1XLN|A Chain A, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLN|B Chain B, Crystal Structure Of Oxidized C73sC85S PUTIDAREDOXIN, A
[2fe-2s] Ferredoxin From Pseudomonas Putida
pdb|1XLO|A Chain A, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|1XLO|B Chain B, Structure Of Reduced C73s/c85s Putidaredoxin, A [2fe-2s]
Ferredoxin From Pseudomonas Putida
pdb|3LB8|C Chain C, Crystal Structure Of The Covalent Putidaredoxin
Reductase- Putidaredoxin Complex
pdb|3LB8|D Chain D, Crystal Structure Of The Covalent Putidaredoxin
Reductase- Putidaredoxin Complex
Length = 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHV 85
V + DG + + V G+S+++A N I ++ G C GS +C+TCHV
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHV 50
>pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|B Chain B, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
pdb|1R7S|C Chain C, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant
Length = 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHV 85
V + DG + + V G+S+++A N I ++ G C GS +C+TCHV
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHV 50
>pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A
[2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|B Chain B, Crystal Structure Of C73s Mutant Of Putidaredoxin, A
[2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1OQR|C Chain C, Crystal Structure Of C73s Mutant Of Putidaredoxin, A
[2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a
Resolution
pdb|1XLP|A Chain A, Structure Of Oxidized C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLP|B Chain B, Structure Of Oxidized C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLP|C Chain C, Structure Of Oxidized C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|A Chain A, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|B Chain B, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
pdb|1XLQ|C Chain C, Crystal Structure Of Reduced C73s Putidaredoxin From
Pseudomonas Putida
Length = 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHV 85
V + DG + + V G+S+++A N I ++ G C GS +C+TCHV
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHV 50
>pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures
Length = 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHV 85
V + DG + + V G+S+++A N I ++ G C GS +C+TCHV
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHV 50
>pdb|1PDX|A Chain A, Putidaredoxin
pdb|1YJI|A Chain A, Rdc-Refined Solution Nmr Structure Of Reduced
Putidaredoxin
pdb|1YJJ|A Chain A, Rdc-Refined Solution Nmr Structure Of Oxidized
Putidaredoxin
Length = 106
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHV 85
V + DG + + V G+S+++A N I ++ G C GS +C+TCHV
Sbjct: 3 VVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHV 50
>pdb|1E9M|A Chain A, Ferredoxin Vi From Rhodobacter Capsulatus
pdb|1UWM|A Chain A, Reduced Ferredoxin 6 From Rhodobacter Capsulatus
Length = 106
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV-IKITWPELDG 95
+ F + +G ++ G++++EA +N + ++ C G+ ACSTCH + W +D
Sbjct: 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAW--VDK 59
Query: 96 VRLAFPAATR--DFAVDGYVPKP 116
+ A P T DFA Y P P
Sbjct: 60 LPKALPTETDMIDFA---YEPNP 79
>pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx
pdb|1I7H|B Chain B, Crystal Sturcuture Of Fdx
pdb|1I7H|C Chain C, Crystal Sturcuture Of Fdx
Length = 111
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI 86
G ++L+A N IE+E ACE S AC+TCH I
Sbjct: 24 GETILDAALRNGIEIEHACEKSCACTTCHCI 54
>pdb|3LXF|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|B Chain B, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|C Chain C, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|D Chain D, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
pdb|3LXF|E Chain E, Crystal Structure Of [2fe-2s] Ferredoxin Arx From
Novosphingobium Aromaticivorans
Length = 104
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHVI 86
+ + +DG I+ G+S++EA+ + I EL C G +C+TCHV+
Sbjct: 3 ILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVL 51
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV-IKITWPELDG 95
V F D+ E + G S++E +N + + C GS C+TC + I+ W E+ G
Sbjct: 2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVG 61
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 66 NDIE-LEGACEGSLACSTCHVIKITWPELDGVRLAFPAATRDFAVDGYVPKP 116
+DIE LEG + ++ I + D L P D AVD P+P
Sbjct: 245 SDIEKLEGKLADDIPSNSPMAINCEYGSFDNEHLVLPRTKYDVAVDEQSPRP 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,651,388
Number of Sequences: 62578
Number of extensions: 131696
Number of successful extensions: 262
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 32
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)