BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041173
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CPW2|ADXL_MOUSE Adrenodoxin-like protein, mitochondrial OS=Mus musculus GN=Fdx1l
PE=2 SV=1
Length = 174
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 41/153 (26%)
Query: 4 PRVFQGSICQKYPQFCTTAEN----DASHGCSIQKDMVNVTFSDKDGEEKNIKVPVGMSM 59
PR ++ + F TT E +A+ + +D+VNV F D+ G+ ++ VG ++
Sbjct: 24 PRAGHAAVTSR--TFGTTGERRAGEEAADSPELPRDVVNVVFVDRSGKRIPVRGKVGDNV 81
Query: 60 LEAVHENDIELEGACEGSLACSTCHVIK-------------------------------- 87
L + ++LEGACE SLACSTCHV
Sbjct: 82 LYLAQRHGVDLEGACEASLACSTCHVYVSEAHLDLLPPPEEREDDMLDMAPLLQENSRLG 141
Query: 88 ---ITWPELDGVRLAFPAATRDFAVDGYVPKPH 117
+ PEL+GV A P TR+F VDG++PKPH
Sbjct: 142 CQIVLTPELEGVEFALPKITRNFYVDGHIPKPH 174
>sp|Q08C57|ADXL_DANRE Adrenodoxin-like protein, mitochondrial OS=Danio rerio GN=fdx1l
PE=2 SV=1
Length = 195
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 35/120 (29%)
Query: 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK----- 87
Q+ +VNV + D+ G ++ VG ++L H++ I+LEGACE SLACSTCHV
Sbjct: 76 QEHIVNVVYIDRSGRRIPVQARVGDNVLYLAHKHGIDLEGACEASLACSTCHVYVSSGHY 135
Query: 88 ------------------------------ITWPELDGVRLAFPAATRDFAVDGYVPKPH 117
I PELDG+ L P TR+F VDG+VPKPH
Sbjct: 136 DRLPEPEEREDDMLDMAPLLQENSRLGCQIILTPELDGMELTLPKVTRNFYVDGHVPKPH 195
>sp|Q9AKH1|FER2_RICRI 2Fe-2S ferredoxin OS=Rickettsia rickettsii GN=fdxB PE=3 SV=1
Length = 112
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 35/108 (32%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI-------KIT 89
+ VTF DGEEK ++ P+G+S+LE H ND++LEGACEGSLAC+TCHVI K+
Sbjct: 5 IKVTFIINDGEEKTVEAPIGLSILEIAHSNDLDLEGACEGSLACATCHVILEEEFYNKLK 64
Query: 90 WP----------------------------ELDGVRLAFPAATRDFAV 109
P ELDG+++ PAATR+ +
Sbjct: 65 KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVHLPAATRNIKL 112
>sp|Q4UKL2|FER2_RICFE 2Fe-2S ferredoxin OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=fdxB PE=3 SV=1
Length = 112
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 35/108 (32%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI-------KIT 89
+ VTF DGEEK ++ P+G+S+LE H ND++LEGACEGSLAC+TCHVI K+
Sbjct: 5 IKVTFIVNDGEEKTVEAPIGLSILEITHSNDLDLEGACEGSLACATCHVILEEEFYNKLK 64
Query: 90 WP----------------------------ELDGVRLAFPAATRDFAV 109
P ELDG+++ P+ATR+ +
Sbjct: 65 KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNIKL 112
>sp|Q9AKM6|FER2_RICMO 2Fe-2S ferredoxin OS=Rickettsia montana GN=fdxB PE=3 SV=1
Length = 112
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 35/108 (32%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI-------KIT 89
+ VTF DGEEK ++ P+G+S+LE H ND++LEGACEGSLAC+TCHVI K+
Sbjct: 5 IKVTFIINDGEEKTVEAPIGLSILEIAHSNDLDLEGACEGSLACATCHVILEEEFYNKLK 64
Query: 90 WP----------------------------ELDGVRLAFPAATRDFAV 109
P ELDG+++ P+ATR+ +
Sbjct: 65 KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNIKL 112
>sp|Q92J08|FER2_RICCN 2Fe-2S ferredoxin OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=fdxB PE=3 SV=1
Length = 112
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 35/108 (32%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI-------KIT 89
+ VTF DGEEK ++ P+G+S+LE H ND++LEGACEGSLAC+TCHVI K+
Sbjct: 5 IKVTFIINDGEEKTVEAPIGLSILEIAHSNDLDLEGACEGSLACATCHVILEEEFYNKLK 64
Query: 90 WP----------------------------ELDGVRLAFPAATRDFAV 109
P ELDG+++ PA TR+ +
Sbjct: 65 KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRIPATTRNIKL 112
>sp|Q9AKC4|FER2_RICTY 2Fe-2S ferredoxin OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=fdxB PE=3 SV=1
Length = 117
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 35/111 (31%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI-------KIT 89
+ VTF D EEK ++ P+G+S+LE H N+++LEGACEGSLAC+TCHV+ K+
Sbjct: 5 IKVTFIINDEEEKTVEAPIGLSILEIAHSNNLDLEGACEGSLACATCHVMLEEEFYNKLK 64
Query: 90 WP----------------------------ELDGVRLAFPAATRDFAVDGY 112
P ELDG+++ P+ATR+ +G+
Sbjct: 65 KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNINYNGF 115
>sp|Q5FWQ0|ADXL_XENLA Adrenodoxin-like protein, mitochondrial OS=Xenopus laevis GN=fdx1l
PE=2 SV=1
Length = 193
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 63/137 (45%), Gaps = 36/137 (26%)
Query: 17 QFCTTAENDA-SHGCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACE 75
Q E+DA + + ++ V V F D+ G+ +K VG S+L H +IELEGACE
Sbjct: 57 QITAGVESDAENQRAELSEETVEVVFLDRSGQRIPVKGKVGESVLCLAHRYNIELEGACE 116
Query: 76 GSLACSTCHVI-------KITWP----------------------------ELDGVRLAF 100
SLACSTCHV K+ P +L+G
Sbjct: 117 SSLACSTCHVYVNTEYFHKLPEPDEREDDMLDMAPLLQENSRLGCQIILTKQLNGAEFTL 176
Query: 101 PAATRDFAVDGYVPKPH 117
P TR+F VDG+VPKPH
Sbjct: 177 PKITRNFYVDGHVPKPH 193
>sp|P37193|ADXH_DROME Adrenodoxin-like protein, mitochondrial OS=Drosophila melanogaster
GN=Fdxh PE=2 SV=3
Length = 172
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 35/118 (29%)
Query: 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI-------K 87
++VN+T+ DKDG+ ++ VG ++L H + IE+EGACE SLAC+TCHV K
Sbjct: 55 EIVNITYVDKDGKRTKVQGKVGDNVLYLAHRHGIEMEGACEASLACTTCHVYVQHDYLQK 114
Query: 88 ITWPE----------------------------LDGVRLAFPAATRDFAVDGYVPKPH 117
+ E ++G+ L P ATR+F VDG+ PKPH
Sbjct: 115 LKEAEEQEDDLLDMAPFLRENSRLGCQILLDKSMEGMELELPKATRNFYVDGHKPKPH 172
>sp|Q9ZDW6|FER2_RICPR 2Fe-2S ferredoxin OS=Rickettsia prowazekii (strain Madrid E)
GN=fdxB PE=3 SV=1
Length = 112
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 35/108 (32%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI-------KIT 89
+ VTF D EE+ ++ P+G+S+LE H ND++LEGACEGSLAC+TCHV+ K+
Sbjct: 5 IKVTFIINDEEERTVEAPIGLSILEIAHSNDLDLEGACEGSLACATCHVMLEEEFYNKLK 64
Query: 90 WP----------------------------ELDGVRLAFPAATRDFAV 109
P ELDG+++ P+ATR+ +
Sbjct: 65 KPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRLPSATRNIKL 112
>sp|Q1RJ69|FER2_RICBR 2Fe-2S ferredoxin OS=Rickettsia bellii (strain RML369-C) GN=fdxB
PE=3 SV=1
Length = 111
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 35/106 (33%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK--------- 87
+ VTF +GEEK I+ P+G+S+LE H N I+LEGACEGSLAC+TCHVI
Sbjct: 5 IKVTFVINNGEEKIIEAPLGLSILEVAHSNSIDLEGACEGSLACATCHVILEEEFYNKLE 64
Query: 88 --------------------------ITWPELDGVRLAFPAATRDF 107
I +LDG+++ P+ATR+
Sbjct: 65 KPKEEEEDMLDLAFGLTDTSRLGCQIILTEKLDGIKVRLPSATRNI 110
>sp|Q6P4F2|ADXL_HUMAN Adrenodoxin-like protein, mitochondrial OS=Homo sapiens GN=FDX1L
PE=1 SV=1
Length = 183
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 36/131 (27%)
Query: 22 AENDASHGCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACS 81
E DA G D+VNV F D+ G+ + VG ++L + ++LEGACE SLACS
Sbjct: 54 GEEDAG-GPERPGDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACS 112
Query: 82 TCHVIK-----------------------------------ITWPELDGVRLAFPAATRD 106
TCHV + PEL+G P TR+
Sbjct: 113 TCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEGAEFTLPKITRN 172
Query: 107 FAVDGYVPKPH 117
F VDG+VPKPH
Sbjct: 173 FYVDGHVPKPH 183
>sp|Q05B51|ADXL_BOVIN Adrenodoxin-like protein, mitochondrial OS=Bos taurus GN=FDX1L PE=2
SV=1
Length = 186
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 37/119 (31%)
Query: 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHV--------- 85
D+VNV F D+ G+ + VG ++L + ++LEGACE SLACSTCHV
Sbjct: 69 DVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGLDLEGACEASLACSTCHVYVSEDHLDL 128
Query: 86 ---------------------------IKITWPELDGVRLAFPAATRDFAVDGYVPKPH 117
I +T PEL+G P TR+F VDG+VPKPH
Sbjct: 129 LPPPDEREDDMLDMAPLLQENSRLGCQIVLT-PELEGAEFTLPKITRNFYVDGHVPKPH 186
>sp|Q8SV19|ADRX_ENCCU Adrenodoxin homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU07_0600 PE=3 SV=1
Length = 128
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 35/97 (36%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI-------KITWP---ELDGVRLAF----- 100
G ++L+ H+N ++LEGACEG+LACSTCHVI K+ P E D + AF
Sbjct: 32 GSTVLDVAHKNGVDLEGACEGNLACSTCHVILEEPLYRKLGEPSDKEYDLIDQAFGATGT 91
Query: 101 --------------------PAATRDFAVDGYVPKPH 117
P AT++ AVDG+ PKPH
Sbjct: 92 SRLGCQLRVDKSFENAVFTVPRATKNMAVDGFKPKPH 128
>sp|P29330|ADX_SHEEP Adrenodoxin OS=Ovis aries GN=FDX1 PE=1 SV=2
Length = 128
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 12/87 (13%)
Query: 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI-- 86
S +D V V F ++DGE K VG S+L+ V EN+++++G ACEG+LACSTCH+I
Sbjct: 1 SSSEDKVTVNFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFE 60
Query: 87 --------KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 61 QHIYEKLEAITDEENDMLDLAYGLTDR 87
>sp|P24483|ADX_RAT Adrenodoxin, mitochondrial OS=Rattus norvegicus GN=Fdx1 PE=2 SV=1
Length = 188
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D V V F ++DGE K VG S+L+ V EN+++++G ACEG+LACSTCH+I
Sbjct: 68 EDKVTVHFKNRDGETLTTKGKVGDSLLDVVIENNLDIDGFGACEGTLACSTCHLIFEDHI 127
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LAF R
Sbjct: 128 YEKLDAITDEENDMLDLAFGLTNR 151
>sp|P46656|ADX_MOUSE Adrenodoxin, mitochondrial OS=Mus musculus GN=Fdx1 PE=2 SV=1
Length = 188
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D + V F ++DGE K +G S+L+ V EN+++++G ACEG+LACSTCH+I
Sbjct: 68 EDKITVHFKNRDGETLTTKGKIGDSLLDVVIENNLDIDGFGACEGTLACSTCHLIFEDHI 127
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LAF R
Sbjct: 128 YEKLDAITDEENDMLDLAFGLTDR 151
>sp|P10109|ADX_HUMAN Adrenodoxin, mitochondrial OS=Homo sapiens GN=FDX1 PE=1 SV=1
Length = 184
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI----- 86
+D + V F ++DGE K VG S+L+ V EN+++++G ACEG+LACSTCH+I
Sbjct: 64 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHI 123
Query: 87 -----KITWPELDGVRLAFPAATR 105
IT E D + LA+ R
Sbjct: 124 YEKLDAITDEENDMLDLAYGLTDR 147
>sp|P00257|ADX_BOVIN Adrenodoxin, mitochondrial OS=Bos taurus GN=FDX1 PE=1 SV=2
Length = 186
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTCHVI 86
S +D + V F ++DGE K +G S+L+ V +N+++++G ACEG+LACSTCH+I
Sbjct: 59 SSSEDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLI 116
>sp|P13216|ADX_CHICK Adrenodoxin, mitochondrial (Fragment) OS=Gallus gallus GN=FDX1 PE=1
SV=1
Length = 143
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 13/87 (14%)
Query: 26 ASHGCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTC 83
A CS +D + V F ++DG++ K G S+L+ V EN+++++G ACEG+LACSTC
Sbjct: 16 ARAACS-SEDKITVHFINRDGDKLTAKGKPGDSLLDVVVENNLDIDGFGACEGTLACSTC 74
Query: 84 HVI----------KITWPELDGVRLAF 100
H+I IT E+D + LA+
Sbjct: 75 HLIFEDHIFEKLDAITDEEMDMLDLAY 101
>sp|P00258|ADX_PIG Adrenodoxin, mitochondrial OS=Sus scrofa GN=FDX1 PE=1 SV=2
Length = 186
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 26 ASHGCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG--ACEGSLACSTC 83
++ S +D + V F ++DG+ + VG S+L+ V EN+++++G ACEG+LACSTC
Sbjct: 54 SARAWSSSEDKITVHFINRDGKTLTTQGKVGDSLLDVVIENNLDIDGFGACEGTLACSTC 113
Query: 84 HVI 86
H+I
Sbjct: 114 HLI 116
>sp|Q12184|ADRX_YEAST Adrenodoxin homolog, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAH1 PE=1 SV=1
Length = 172
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI 86
+ +TF KDG +K +V G ++L+ +++++EGAC GS ACSTCHVI
Sbjct: 61 LKITFILKDGSQKTYEVCEGETILDIAQGHNLDMEGACGGSCACSTCHVI 110
>sp|P37098|FER2_CAUCR 2Fe-2S ferredoxin OS=Caulobacter crescentus (strain ATCC 19089 /
CB15) GN=fdxB PE=3 SV=1
Length = 106
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV-IKITWPEL 93
M +T+ DG E+ I V G++++E +N++ ++ C G+ AC+TCHV + W +
Sbjct: 1 MAKITYIQHDGAEQVIDVKPGLTVMEGAVKNNVPGIDADCGGACACATCHVYVDEAWLDK 60
Query: 94 DGVRLAFPAATRDFA 108
G + A + DFA
Sbjct: 61 TGDKSAMEESMLDFA 75
>sp|Q10361|ETP1_SCHPO Electron transfer protein 1, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=etp1 PE=1 SV=2
Length = 616
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 15/16 (93%), Positives = 16/16 (100%)
Query: 71 EGACEGSLACSTCHVI 86
EGACEGS+ACSTCHVI
Sbjct: 538 EGACEGSVACSTCHVI 553
>sp|P00259|PUTX_PSEPU Putidaredoxin OS=Pseudomonas putida GN=camB PE=1 SV=3
Length = 107
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHV 85
M V + DG + + V G+S+++A N I ++ G C GS +C+TCHV
Sbjct: 1 MSKVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHV 51
>sp|Q51383|FER_PSEAE 2Fe-2S ferredoxin OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=fdx PE=3 SV=2
Length = 112
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI 86
G ++L+A N IE+E ACE S AC+TCHVI
Sbjct: 24 GETILDAALRNGIEIEHACEKSCACTTCHVI 54
>sp|P44428|FER_HAEIN 2Fe-2S ferredoxin OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=fdx PE=3 SV=2
Length = 113
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 51 IKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVI 86
+ G ++LE H +E+ AC+GS AC+TCHVI
Sbjct: 19 VDAATGDNLLEVAHNAGVEIHHACDGSCACTTCHVI 54
>sp|D5IGG4|CARAC_SPHSX Ferredoxin CarAc OS=Sphingomonas sp. GN=carAc PE=1 SV=1
Length = 109
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV-IKITWPELD 94
V V F G E ++ G+S++EA N ++ +E C G+ AC+TCHV + W LD
Sbjct: 5 VRVIFRAAGGFEHLVETEAGVSLMEAAVLNGVDGIEAVCGGACACATCHVYVGPEW--LD 62
Query: 95 GVRLAFPAATRDFAVDGYVPK-PH 117
++ P+ T D +D + PH
Sbjct: 63 ALKP--PSETEDEMLDCVAERAPH 84
>sp|P80306|FER6_RHOCA Ferredoxin-6 OS=Rhodobacter capsulatus PE=1 SV=1
Length = 106
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV-IKITWPELDG 95
+ F + +G ++ G++++EA +N + ++ C G+ ACSTCH + W +D
Sbjct: 2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAW--VDK 59
Query: 96 VRLAFPAATR--DFAVDGYVPKP 116
+ A P T DFA Y P P
Sbjct: 60 LPKALPTETDMIDFA---YEPNP 79
>sp|P0A9R6|FER_SHIFL 2Fe-2S ferredoxin OS=Shigella flexneri GN=fdx PE=3 SV=2
Length = 111
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI 86
G ++L+A N IE+E ACE S AC+TCH I
Sbjct: 24 GETILDAALRNGIEIEHACEKSCACTTCHCI 54
>sp|P0A9R4|FER_ECOLI 2Fe-2S ferredoxin OS=Escherichia coli (strain K12) GN=fdx PE=1
SV=2
Length = 111
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI 86
G ++L+A N IE+E ACE S AC+TCH I
Sbjct: 24 GETILDAALRNGIEIEHACEKSCACTTCHCI 54
>sp|P0A9R5|FER_ECO57 2Fe-2S ferredoxin OS=Escherichia coli O157:H7 GN=fdx PE=3 SV=2
Length = 111
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI 86
G ++L+A N IE+E ACE S AC+TCH I
Sbjct: 24 GETILDAALRNGIEIEHACEKSCACTTCHCI 54
>sp|O51882|FER_BUCAP 2Fe-2S ferredoxin OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=fdx PE=3 SV=1
Length = 111
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI 86
G ++L +N+I+LE ACE S ACSTCH I
Sbjct: 24 GETILNVALKNNIKLEHACEKSCACSTCHCI 54
>sp|P57661|FER_BUCAI 2Fe-2S ferredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=fdx PE=3 SV=1
Length = 111
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCHVI 86
G ++L N+I+LE ACE S ACSTCH I
Sbjct: 24 GETILTVALRNNIKLEHACEQSCACSTCHCI 54
>sp|Q605A0|NQRF_METCA Na(+)-translocating NADH-quinone reductase subunit F
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=nqrF PE=3 SV=1
Length = 407
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 48 EKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHV 85
E+ I VP+G +L A+ +N++ + AC G C+ C V
Sbjct: 42 ERTIHVPIGSKLLTALADNNLFVSSACGGGGTCAQCRV 79
>sp|Q89A15|FER_BUCBP 2Fe-2S ferredoxin OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=fdx PE=3 SV=1
Length = 107
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 56 GMSMLEAVHENDIELEGACEGSLACSTCH 84
G S+L N++E+E ACE S C+TCH
Sbjct: 24 GESILNVALRNNVEIEHACEKSCVCTTCH 52
>sp|P43493|THCC_RHOER Rhodocoxin OS=Rhodococcus erythropolis GN=thcC PE=1 SV=2
Length = 107
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV 85
M VT+ DG + ++VP G +++A I+ + C G C+TCHV
Sbjct: 1 MPTVTYVHPDGTKHEVEVPTGKRVMQAAIGAGIDGIVAECGGQAMCATCHV 51
>sp|P33007|TERPB_PSESP Terpredoxin OS=Pseudomonas sp. GN=terPB PE=1 SV=2
Length = 106
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHV-IKITWPEL 93
M V F D+ E + G S++E +N + + C GS C+TC + I+ W E+
Sbjct: 1 MPRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEI 60
Query: 94 DG 95
G
Sbjct: 61 VG 62
>sp|A6V3A2|NQRF_PSEA7 Na(+)-translocating NADH-quinone reductase subunit F
OS=Pseudomonas aeruginosa (strain PA7) GN=nqrF PE=3
SV=1
Length = 407
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 48 EKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIKI 88
E ++ VP G +L+ + N++ L AC G C+ C + +
Sbjct: 44 EHSLTVPAGGKLLQTLAANNVFLSSACGGGGTCAQCKCVVV 84
>sp|Q02PF8|NQRF_PSEAB Na(+)-translocating NADH-quinone reductase subunit F
OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nqrF
PE=3 SV=1
Length = 407
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 48 EKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIKI 88
E ++ VP G +L+ + N++ L AC G C+ C + +
Sbjct: 44 EHSLTVPAGGKLLQTLATNNVFLSSACGGGGTCAQCKCVVV 84
>sp|Q9HZL1|NQRF_PSEAE Na(+)-translocating NADH-quinone reductase subunit F
OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 /
1C / PRS 101 / LMG 12228) GN=nqrF PE=3 SV=1
Length = 407
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 48 EKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIKI 88
E ++ VP G +L+ + N++ L AC G C+ C + +
Sbjct: 44 EHSLTVPAGGKLLQTLAANNVFLSSACGGGGTCAQCKCVVV 84
>sp|Q47D81|GCSP_DECAR Glycine dehydrogenase [decarboxylating] OS=Dechloromonas aromatica
(strain RCB) GN=gcvP PE=3 SV=1
Length = 963
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 57 MSMLEAVHENDIELE------GACEGSLACSTCHVIKITWPELDGVRLAFPAATRDFAVD 110
+ L+++ D+ L+ G+C L +T +I +TWPE G+ P A RD AV
Sbjct: 488 LRYLKSLQNKDLALDHSMISLGSCTMKL-NATSEMIPVTWPEFGGIH---PFAPRDQAV- 542
Query: 111 GYV 113
GY+
Sbjct: 543 GYL 545
>sp|Q1Q7Z7|NQRF_PSYCK Na(+)-translocating NADH-quinone reductase subunit F
OS=Psychrobacter cryohalolentis (strain K5) GN=nqrF
PE=3 SV=1
Length = 411
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCH 84
+VT D E ++ P G +L+ + I L AC G C+ C
Sbjct: 36 DVTIHINDNPENDVVTPAGGKLLQTLASEGIFLSSACGGGGTCAQCR 82
>sp|P59799|FER5_AQUAE 2Fe-2S ferredoxin-5 OS=Aquifex aeolicus (strain VF5) GN=fdx5 PE=1
SV=2
Length = 96
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 58 SMLEAVHENDIELEGACEGSLACSTCHVIKITWPE 92
++++ ++ N IE++ AC G C++C V+ I+ E
Sbjct: 20 TIMQILYRNGIEIDSACGGHGQCTSCKVLIISGSE 54
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,275,355
Number of Sequences: 539616
Number of extensions: 1669059
Number of successful extensions: 3845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3754
Number of HSP's gapped (non-prelim): 92
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)