Query 041173
Match_columns 117
No_of_seqs 154 out of 1005
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 99.9 3.7E-27 8.1E-32 174.6 11.0 109 9-117 15-159 (159)
2 PLN02593 adrenodoxin-like ferr 99.9 4.5E-23 9.7E-28 146.4 9.7 81 37-117 1-117 (117)
3 PTZ00490 Ferredoxin superfamil 99.8 2.2E-18 4.8E-23 126.7 9.7 75 32-106 31-141 (143)
4 TIGR02008 fdx_plant ferredoxin 99.5 1.3E-13 2.9E-18 94.3 8.2 50 37-87 3-52 (97)
5 TIGR02007 fdx_isc ferredoxin, 99.4 3.5E-13 7.5E-18 94.4 7.4 42 44-87 13-54 (110)
6 COG0633 Fdx Ferredoxin [Energy 99.4 7.4E-13 1.6E-17 91.9 7.2 51 36-87 1-52 (102)
7 CHL00134 petF ferredoxin; Vali 99.4 1.6E-12 3.6E-17 89.5 8.5 51 36-87 3-54 (99)
8 TIGR01941 nqrF NADH:ubiquinone 99.3 3E-12 6.4E-17 105.9 7.6 55 33-87 26-80 (405)
9 PTZ00038 ferredoxin; Provision 99.3 2.9E-11 6.3E-16 92.8 9.3 50 36-87 95-144 (191)
10 PLN03136 Ferredoxin; Provision 99.3 2.4E-11 5.2E-16 89.9 8.0 51 35-87 53-103 (148)
11 PRK10713 2Fe-2S ferredoxin Yfa 99.2 2.1E-11 4.6E-16 81.5 6.2 48 36-87 1-49 (84)
12 PF00111 Fer2: 2Fe-2S iron-sul 99.2 2.7E-11 5.9E-16 78.4 5.6 43 44-87 3-47 (78)
13 PRK05464 Na(+)-translocating N 99.1 1.7E-10 3.7E-15 95.5 7.9 53 33-87 32-84 (409)
14 PF13510 Fer2_4: 2Fe-2S iron-s 99.1 8.7E-11 1.9E-15 78.5 4.6 62 34-100 1-79 (82)
15 PRK11872 antC anthranilate dio 99.1 4.5E-10 9.8E-15 90.9 8.3 50 37-87 3-52 (340)
16 PRK07609 CDP-6-deoxy-delta-3,4 99.1 6E-10 1.3E-14 89.4 7.7 47 37-87 3-49 (339)
17 cd00207 fer2 2Fe-2S iron-sulfu 99.0 7.7E-10 1.7E-14 71.8 5.8 41 46-87 7-47 (84)
18 PRK07569 bidirectional hydroge 99.0 1.6E-09 3.5E-14 84.2 6.8 62 36-102 3-78 (234)
19 COG3894 Uncharacterized metal- 98.9 8.3E-10 1.8E-14 95.1 5.1 66 36-105 1-91 (614)
20 PRK05713 hypothetical protein; 98.9 1.6E-09 3.5E-14 86.5 5.4 46 36-87 1-46 (312)
21 COG2871 NqrF Na+-transporting 98.8 7.9E-09 1.7E-13 84.8 5.7 49 37-87 37-85 (410)
22 TIGR02160 PA_CoA_Oxy5 phenylac 98.8 1.3E-08 2.7E-13 82.2 6.7 51 35-87 261-312 (352)
23 PRK10684 HCP oxidoreductase, N 98.8 2E-08 4.3E-13 80.8 6.9 50 34-87 246-295 (332)
24 PRK08166 NADH dehydrogenase su 98.5 2.3E-07 5.1E-12 83.2 6.9 62 36-102 1-81 (847)
25 PTZ00305 NADH:ubiquinone oxido 98.4 1E-06 2.2E-11 71.8 7.1 62 36-102 68-144 (297)
26 PRK09130 NADH dehydrogenase su 98.3 1.2E-06 2.6E-11 77.6 7.1 62 36-102 1-77 (687)
27 PRK07860 NADH dehydrogenase su 98.3 1.3E-06 2.7E-11 78.4 7.1 63 34-101 2-78 (797)
28 PRK08493 NADH dehydrogenase su 98.3 1.7E-06 3.6E-11 78.3 6.8 62 36-102 1-74 (819)
29 COG1034 NuoG NADH dehydrogenas 98.3 1.5E-06 3.3E-11 77.4 6.4 62 36-102 1-76 (693)
30 PRK09129 NADH dehydrogenase su 98.2 2.7E-06 5.9E-11 75.6 6.9 62 36-102 1-76 (776)
31 PRK12814 putative NADPH-depend 98.2 2.4E-06 5.2E-11 74.9 6.2 63 36-103 3-79 (652)
32 COG3383 Uncharacterized anaero 98.2 2.9E-06 6.3E-11 76.5 6.2 66 33-103 2-79 (978)
33 TIGR01973 NuoG NADH-quinone ox 98.1 8.3E-06 1.8E-10 70.7 6.2 56 45-102 4-74 (603)
34 PRK06259 succinate dehydrogena 97.8 5.3E-05 1.2E-09 64.0 5.7 53 49-102 23-88 (486)
35 PRK09908 xanthine dehydrogenas 97.7 8.9E-05 1.9E-09 55.7 6.2 49 37-87 7-56 (159)
36 PRK11433 aldehyde oxidoreducta 97.5 0.0004 8.7E-09 54.5 7.5 65 37-103 50-125 (217)
37 TIGR03193 4hydroxCoAred 4-hydr 97.4 0.00051 1.1E-08 51.0 5.7 58 44-102 6-74 (148)
38 TIGR00384 dhsB succinate dehyd 97.3 0.00025 5.5E-09 54.6 3.2 39 48-87 16-60 (220)
39 PRK12385 fumarate reductase ir 97.0 0.002 4.4E-08 50.8 6.4 38 49-87 27-70 (244)
40 PF13085 Fer2_3: 2Fe-2S iron-s 97.0 0.0021 4.5E-08 45.5 5.8 38 49-87 21-64 (110)
41 PRK08640 sdhB succinate dehydr 97.0 0.0018 3.8E-08 51.3 5.8 39 48-87 24-75 (249)
42 PRK13552 frdB fumarate reducta 97.0 0.0012 2.6E-08 51.9 4.7 39 48-87 25-69 (239)
43 PRK12576 succinate dehydrogena 97.0 0.0028 6E-08 50.9 6.6 39 48-87 26-70 (279)
44 PRK12386 fumarate reductase ir 96.9 0.0025 5.4E-08 50.7 6.1 39 48-87 21-65 (251)
45 TIGR03198 pucE xanthine dehydr 96.9 0.0022 4.8E-08 47.7 5.1 59 44-103 8-77 (151)
46 PRK12577 succinate dehydrogena 96.9 0.0033 7.1E-08 51.5 6.4 39 48-87 20-64 (329)
47 PRK05950 sdhB succinate dehydr 96.7 0.0035 7.6E-08 48.7 5.3 39 48-87 19-64 (232)
48 PRK09800 putative hypoxanthine 96.5 0.005 1.1E-07 56.9 5.7 63 39-102 3-75 (956)
49 COG0479 FrdB Succinate dehydro 96.4 0.0053 1.1E-07 48.7 4.5 38 49-87 22-65 (234)
50 PLN00129 succinate dehydrogena 96.4 0.0056 1.2E-07 49.5 4.7 56 31-87 38-108 (276)
51 COG2080 CoxS Aerobic-type carb 96.1 0.02 4.4E-07 42.9 6.0 48 38-87 3-52 (156)
52 TIGR01372 soxA sarcosine oxida 96.0 0.025 5.4E-07 52.2 7.3 61 38-102 12-95 (985)
53 TIGR03313 Se_sel_red_Mo probab 95.7 0.015 3.3E-07 53.8 4.9 58 45-103 4-72 (951)
54 PRK07570 succinate dehydrogena 95.7 0.0089 1.9E-07 47.5 2.7 38 49-87 22-70 (250)
55 TIGR02963 xanthine_xdhA xanthi 95.0 0.034 7.3E-07 47.7 4.4 43 44-87 5-50 (467)
56 PRK12575 succinate dehydrogena 94.4 0.068 1.5E-06 42.1 4.4 38 49-87 25-68 (235)
57 TIGR03311 Se_dep_Molyb_1 selen 93.9 0.13 2.8E-06 47.2 5.7 56 45-103 6-72 (848)
58 KOG2282 NADH-ubiquinone oxidor 92.0 0.38 8.2E-06 42.8 5.6 54 45-100 38-105 (708)
59 TIGR02969 mam_aldehyde_ox alde 91.5 0.27 5.9E-06 47.2 4.5 47 39-87 3-52 (1330)
60 PLN00192 aldehyde oxidase 91.2 0.38 8.1E-06 46.3 5.2 47 39-87 6-55 (1344)
61 cd01760 RBD Ubiquitin-like dom 84.1 2 4.4E-05 28.1 3.8 24 41-64 4-27 (72)
62 PF02196 RBD: Raf-like Ras-bin 80.8 3.5 7.5E-05 26.6 4.0 27 37-65 3-29 (71)
63 smart00455 RBD Raf-like Ras-bi 77.8 5.8 0.00012 25.5 4.3 22 43-64 6-27 (70)
64 cd06221 sulfite_reductase_like 75.6 2.1 4.5E-05 33.1 2.1 30 57-86 203-240 (253)
65 PF02824 TGS: TGS domain; Int 75.2 5.9 0.00013 24.5 3.7 31 43-75 5-35 (60)
66 cd01791 Ubl5 UBL5 ubiquitin-li 72.7 9.5 0.00021 24.5 4.3 35 36-70 1-39 (73)
67 cd06220 DHOD_e_trans_like2 FAD 70.7 3.7 8E-05 31.1 2.4 30 57-87 180-215 (233)
68 PRK00054 dihydroorotate dehydr 70.6 3.3 7.1E-05 31.8 2.1 29 58-87 195-229 (250)
69 cd01816 Raf_RBD Ubiquitin doma 69.8 7.5 0.00016 25.9 3.4 22 44-65 7-28 (74)
70 TIGR02911 sulfite_red_B sulfit 66.1 3.3 7.3E-05 32.2 1.3 29 58-86 204-240 (261)
71 cd06218 DHOD_e_trans FAD/NAD b 65.1 7.1 0.00015 30.0 3.0 30 58-87 194-228 (246)
72 PRK08364 sulfur carrier protei 65.1 17 0.00036 23.0 4.3 35 35-70 3-37 (70)
73 PF03658 Ub-RnfH: RnfH family 63.2 9.8 0.00021 25.7 3.0 33 37-69 3-36 (84)
74 COG4630 XdhA Xanthine dehydrog 63.2 24 0.00051 30.7 5.9 50 36-87 6-58 (493)
75 cd01817 RGS12_RBD Ubiquitin do 62.9 14 0.0003 24.5 3.6 26 44-69 7-36 (73)
76 PRK05659 sulfur carrier protei 62.7 14 0.00031 22.6 3.6 24 45-70 6-29 (66)
77 PLN02906 xanthine dehydrogenas 60.4 9.9 0.00021 36.8 3.5 31 56-87 1-32 (1319)
78 cd06219 DHOD_e_trans_like1 FAD 59.8 6.3 0.00014 30.2 1.8 28 58-86 194-227 (248)
79 PRK08221 anaerobic sulfite red 58.6 5 0.00011 31.3 1.1 30 57-86 205-242 (263)
80 cd01818 TIAM1_RBD Ubiquitin do 58.5 16 0.00036 24.4 3.4 21 44-64 7-27 (77)
81 PRK06222 ferredoxin-NADP(+) re 56.4 8.1 0.00018 30.4 2.0 28 58-86 195-228 (281)
82 KOG0430 Xanthine dehydrogenase 54.4 45 0.00098 32.5 6.7 42 45-87 8-52 (1257)
83 PRK07440 hypothetical protein; 52.9 33 0.00072 21.8 4.1 30 36-70 4-33 (70)
84 PRK08345 cytochrome-c3 hydroge 51.5 12 0.00026 29.6 2.2 30 57-87 225-263 (289)
85 PF10531 SLBB: SLBB domain; I 49.7 35 0.00075 20.6 3.7 23 49-71 12-34 (59)
86 COG2071 Predicted glutamine am 48.9 9.6 0.00021 30.6 1.3 21 57-77 97-117 (243)
87 PRK06437 hypothetical protein; 47.9 45 0.00097 21.0 4.1 26 45-70 9-34 (67)
88 PRK01777 hypothetical protein; 47.2 58 0.0013 22.2 4.8 23 49-71 19-41 (95)
89 PF11470 TUG-UBL1: GLUT4 regul 46.6 24 0.00052 22.5 2.7 24 42-65 2-25 (65)
90 cd01803 Ubiquitin Ubiquitin. U 43.3 54 0.0012 20.0 3.9 25 38-62 2-26 (76)
91 PF03990 DUF348: Domain of unk 42.5 60 0.0013 18.6 3.8 30 39-70 2-31 (43)
92 cd01805 RAD23_N Ubiquitin-like 42.3 57 0.0012 20.1 3.9 25 38-62 2-26 (77)
93 cd01809 Scythe_N Ubiquitin-lik 42.2 58 0.0013 19.6 3.9 25 38-62 2-26 (72)
94 PRK12778 putative bifunctional 41.5 25 0.00054 31.6 2.9 28 58-86 195-228 (752)
95 cd01806 Nedd8 Nebb8-like ubiq 41.5 60 0.0013 19.8 3.9 25 38-62 2-26 (76)
96 cd01787 GRB7_RA RA (RAS-associ 40.8 80 0.0017 21.4 4.6 27 39-65 5-31 (85)
97 PF00789 UBX: UBX domain; Int 39.7 84 0.0018 19.8 4.5 31 32-62 2-32 (82)
98 cd01807 GDX_N ubiquitin-like d 38.7 69 0.0015 19.9 3.9 33 38-70 2-38 (74)
99 PRK06944 sulfur carrier protei 38.2 55 0.0012 19.8 3.3 23 45-69 6-28 (65)
100 cd01804 midnolin_N Ubiquitin-l 37.5 84 0.0018 20.0 4.2 26 37-62 2-27 (78)
101 PTZ00044 ubiquitin; Provisiona 37.3 76 0.0016 19.6 3.9 32 38-69 2-37 (76)
102 PRK05863 sulfur carrier protei 37.1 74 0.0016 19.7 3.8 28 38-70 2-29 (65)
103 cd01763 Sumo Small ubiquitin-r 36.8 1.2E+02 0.0026 19.7 5.4 38 33-70 8-49 (87)
104 cd01790 Herp_N Homocysteine-re 36.0 91 0.002 20.6 4.2 26 37-62 2-29 (79)
105 cd06192 DHOD_e_trans_like FAD/ 35.8 26 0.00055 26.5 1.8 29 58-87 192-228 (243)
106 COG3061 OapA Cell envelope opa 35.7 38 0.00082 27.2 2.7 26 45-70 156-181 (242)
107 cd00118 LysM Lysin domain, fou 35.2 40 0.00086 17.2 2.1 21 50-70 2-22 (46)
108 PF01476 LysM: LysM domain; I 34.0 39 0.00085 18.6 2.0 19 52-70 2-20 (44)
109 KOG4214 Myotrophin and similar 33.7 12 0.00025 26.7 -0.3 28 41-68 85-112 (117)
110 PRK05802 hypothetical protein; 33.6 35 0.00075 27.7 2.3 28 59-87 269-304 (320)
111 cd01810 ISG15_repeat2 ISG15 ub 33.3 1E+02 0.0022 19.1 4.1 30 40-69 2-35 (74)
112 TIGR02899 spore_safA spore coa 33.0 26 0.00055 18.8 1.1 19 53-71 1-19 (44)
113 COG2104 ThiS Sulfur transfer p 32.5 92 0.002 19.9 3.8 21 50-70 11-31 (68)
114 PF04225 OapA: Opacity-associa 31.8 48 0.001 21.9 2.4 22 49-70 3-24 (85)
115 cd01792 ISG15_repeat1 ISG15 ub 31.1 1.1E+02 0.0023 19.5 3.9 26 37-62 3-28 (80)
116 PRK06083 sulfur carrier protei 31.0 1.2E+02 0.0025 20.2 4.2 31 34-69 16-46 (84)
117 COG4070 Predicted peptidyl-pro 30.2 61 0.0013 28.4 3.3 25 45-71 7-31 (512)
118 COG2440 FixX Ferredoxin-like p 27.7 28 0.0006 24.4 0.7 13 75-87 65-77 (99)
119 COG2914 Uncharacterized protei 27.4 1.5E+02 0.0033 20.7 4.3 21 49-69 19-39 (99)
120 PF10418 DHODB_Fe-S_bind: Iron 27.3 38 0.00081 19.6 1.1 14 73-87 5-18 (40)
121 PRK12775 putative trifunctiona 27.2 57 0.0012 30.8 2.8 29 58-87 195-229 (1006)
122 PRK08053 sulfur carrier protei 27.0 1.4E+02 0.0031 18.3 3.9 24 45-70 6-29 (66)
123 cd01812 BAG1_N Ubiquitin-like 26.4 1.2E+02 0.0025 18.2 3.4 25 37-62 1-25 (71)
124 cd01813 UBP_N UBP ubiquitin pr 26.3 1.1E+02 0.0023 19.5 3.3 24 38-62 2-25 (74)
125 KOG3049 Succinate dehydrogenas 25.6 55 0.0012 26.4 2.1 31 56-87 76-112 (288)
126 smart00257 LysM Lysin motif. 24.1 84 0.0018 15.6 2.1 20 51-70 2-21 (44)
127 PF11976 Rad60-SLD: Ubiquitin- 23.8 1.3E+02 0.0028 18.3 3.3 34 37-70 1-38 (72)
128 smart00166 UBX Domain present 23.6 2E+02 0.0044 18.1 4.6 28 35-62 3-30 (80)
129 PF00564 PB1: PB1 domain; Int 23.4 1.3E+02 0.0028 18.7 3.2 31 34-66 39-69 (84)
130 TIGR00601 rad23 UV excision re 23.3 1.2E+02 0.0027 25.6 3.9 26 37-62 1-26 (378)
131 PF14801 GCD14_N: tRNA methylt 22.8 1.2E+02 0.0025 19.0 2.8 20 38-57 11-30 (54)
132 KOG4289 Cadherin EGF LAG seven 22.1 45 0.00098 33.8 1.2 53 49-101 1035-1094(2531)
133 cd01808 hPLIC_N Ubiquitin-like 21.8 2E+02 0.0043 17.6 3.8 25 37-62 1-25 (71)
134 COG1724 Predicted RNA binding 21.7 2.1E+02 0.0046 18.6 3.9 30 39-68 31-65 (66)
135 PRK00969 hypothetical protein; 20.8 1.4E+02 0.0031 26.5 3.9 32 36-72 1-32 (508)
136 PF05198 IF3_N: Translation in 20.5 1.1E+02 0.0023 20.0 2.4 31 38-70 14-44 (76)
137 cd01802 AN1_N ubiquitin-like d 20.4 2.9E+02 0.0063 18.7 5.8 36 35-70 26-65 (103)
138 cd01767 UBX UBX (ubiquitin reg 20.3 2.3E+02 0.0051 17.6 4.4 26 37-62 3-28 (77)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.95 E-value=3.7e-27 Score=174.56 Aligned_cols=109 Identities=50% Similarity=0.816 Sum_probs=92.7
Q ss_pred ccccccCcceeccCCCCCCC-CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 9 GSICQKYPQFCTTAENDASH-GCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
-++-.+++.|..+.....+. +++.....++|+|+++||.+..+++..|+|||++|.++||+++++|+|..+|+||||+|
T Consensus 15 ~a~~~~~~~f~~~~t~~~~~~~~~~~~e~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv 94 (159)
T KOG3309|consen 15 LAPFTRNHIFRTSSTSEFSPSKGPRKVEDIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIV 94 (159)
T ss_pred ccccccceeeccCcccccccccCCCCCceEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEE
Confidence 34444556666554443321 23333444999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------EeeCCCCCeEEecCCCccceeecCCCCCCC
Q 041173 88 -----------------------------------ITWPELDGVRLAFPAATRDFAVDGYVPKPH 117 (117)
Q Consensus 88 -----------------------------------~l~~~~dGlvv~lP~~~~~~~~~~~~~~~~ 117 (117)
.++++||||+|+||...+|+++||++||||
T Consensus 95 ~~~~yekl~ep~DeE~DmLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~atrn~~vd~~~~kph 159 (159)
T KOG3309|consen 95 DEEYYEKLPEPEDEENDMLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEATRNFRVDGFVPKPH 159 (159)
T ss_pred cHHHHhcCCCCcchHHHHHHhhhccccccccceEEEeccccCCcEEECccccccccccCCCCCCC
Confidence 999999999999999999999999999999
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.89 E-value=4.5e-23 Score=146.43 Aligned_cols=81 Identities=80% Similarity=1.293 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE-----------------------------
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK----------------------------- 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V----------------------------- 87 (117)
++|+|++++|+++++++..|+|||+|++++||++++.|||.+.|+||||+|
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 589999999999999999999999999999999999999999999999998
Q ss_pred -------EeeCCCCCeEEecCCCccceeecCCCCCCC
Q 041173 88 -------ITWPELDGVRLAFPAATRDFAVDGYVPKPH 117 (117)
Q Consensus 88 -------~l~~~~dGlvv~lP~~~~~~~~~~~~~~~~ 117 (117)
.++++++|++|.||++.+|+++++|+++||
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~~~~~~~~~~~~~~ 117 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAATRNFAVDGHVPKPH 117 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchhccccccCCCCCCC
Confidence 677888999999999999999999999999
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.77 E-value=2.2e-18 Score=126.73 Aligned_cols=75 Identities=33% Similarity=0.736 Sum_probs=69.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHC-CCCccCCCCCcccccCCEEEE-----------------------
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DIELEGACEGSLACSTCHVIK----------------------- 87 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI~l~~~CgG~g~CgTC~V~V----------------------- 87 (117)
.+...++|+|++++|.++++++++|+|||+++.++ ++++++.|||+++|+||||+|
T Consensus 31 ~~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~ 110 (143)
T PTZ00490 31 STPGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKAL 110 (143)
T ss_pred cCCCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccc
Confidence 45678999999999999999999999999999995 689999999999999999999
Q ss_pred ------------EeeCCCCCeEEecCCCccc
Q 041173 88 ------------ITWPELDGVRLAFPAATRD 106 (117)
Q Consensus 88 ------------~l~~~~dGlvv~lP~~~~~ 106 (117)
.++++|||++|+||++..|
T Consensus 111 ~~~~gsRLaCQi~v~~~ldgl~V~vp~~~~~ 141 (143)
T PTZ00490 111 DVKETSRLACQVDLTPEMDGLEVELPSYVTN 141 (143)
T ss_pred cCCCCcEEeeeEEEecCCCCEEEEeCccccc
Confidence 7788899999999998764
No 4
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.49 E-value=1.3e-13 Score=94.32 Aligned_cols=50 Identities=36% Similarity=0.565 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+|..++|..+++++++|+|||++|+++||++++.|+ +|.||+|+++|
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~-~G~Cg~C~v~v 52 (97)
T TIGR02008 3 YKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCR-AGACSTCAGKV 52 (97)
T ss_pred EEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCceEE
Confidence 578886688888899999999999999999999999999 78999999999
No 5
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.44 E-value=3.5e-13 Score=94.37 Aligned_cols=42 Identities=40% Similarity=0.763 Sum_probs=39.2
Q ss_pred CCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 44 KDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 44 ~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
+.|. ++++..|+|||++|+++||++++.|+|.|.|+||+|+|
T Consensus 13 p~~~--~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V 54 (110)
T TIGR02007 13 PEGA--VVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIV 54 (110)
T ss_pred CCCe--EEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEE
Confidence 5454 89999999999999999999999999999999999999
No 6
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.41 E-value=7.4e-13 Score=91.86 Aligned_cols=51 Identities=41% Similarity=0.655 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCEEE-EEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKN-IKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~-v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
|.++.++..++.... +.+..|+|||++|+++||++++.|+|+ +|+||||+|
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g-~C~TC~v~v 52 (102)
T COG0633 1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGG-ACGTCRVKV 52 (102)
T ss_pred CCceEEEeccCCcceEEeccCCcHHHHHHHHCCCcceecCCCC-ccCccEEEE
Confidence 456677767765444 445559999999999999999999986 999999998
No 7
>CHL00134 petF ferredoxin; Validated
Probab=99.40 E-value=1.6e-12 Score=89.51 Aligned_cols=51 Identities=31% Similarity=0.513 Sum_probs=45.3
Q ss_pred ceEEEEEc-CCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSD-KDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~-~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.+ .+|..++|++++|+|||+||+++||++++.|+ .|.||+|+++|
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~-~G~Cg~C~v~v 54 (99)
T CHL00134 3 TYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCR-AGACSTCAGKV 54 (99)
T ss_pred eEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEE
Confidence 36777764 26777789999999999999999999999999 89999999999
No 8
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.34 E-value=3e-12 Score=105.86 Aligned_cols=55 Identities=33% Similarity=0.544 Sum_probs=48.5
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
-.++.+|+++..+|..+++++.+|+|||+||+++|+++++.|+|+|.||+|+|+|
T Consensus 26 ~~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v 80 (405)
T TIGR01941 26 LVSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRV 80 (405)
T ss_pred ccccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEE
Confidence 3445567777677777899999999999999999999999999989999999998
No 9
>PTZ00038 ferredoxin; Provisional
Probab=99.27 E-value=2.9e-11 Score=92.78 Aligned_cols=50 Identities=34% Similarity=0.566 Sum_probs=44.5
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
.++|+|..++|. +++++++|+||||||+++||++++.|++ |.||+|+++|
T Consensus 95 ~~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI~lp~sCr~-G~CGtCkvrV 144 (191)
T PTZ00038 95 FYNITLQTPDGE-KVIECDEDEYILDAAERQGVELPYSCRG-GSCSTCAAKL 144 (191)
T ss_pred eEEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCCCCcCCCC-ccCCCCEeEE
Confidence 367888656664 6899999999999999999999999995 8999999998
No 10
>PLN03136 Ferredoxin; Provisional
Probab=99.26 E-value=2.4e-11 Score=89.90 Aligned_cols=51 Identities=25% Similarity=0.486 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
..++|+|++++| .+++++++|+||||+|+++||++++.|+ .|.|++|+++|
T Consensus 53 ~~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr-~G~CGtC~~~l 103 (148)
T PLN03136 53 ATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYSCR-AGSCSSCAGKV 103 (148)
T ss_pred eeEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcCCC-CccCCCCEEEE
Confidence 357888876665 3689999999999999999999999999 78999999999
No 11
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.24 E-value=2.1e-11 Score=81.52 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCEEEEEecC-CchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPV-GMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~-G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
|++|+|. ..|. .+++.+ |+|||+||+++||++++.|+ .|.||+|++++
T Consensus 1 ~~~v~~~-~~~~--~~~~~~~~~tlL~a~~~~gi~~p~~Cr-~G~Cg~C~~~~ 49 (84)
T PRK10713 1 MARVTLR-ITGT--QLLCQDEHPSLLAALESHNVAVEYQCR-EGYCGSCRTRL 49 (84)
T ss_pred CCEEEEE-eCCc--EEEecCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEeEE
Confidence 6788875 4554 788886 59999999999999999999 78999999998
No 12
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.22 E-value=2.7e-11 Score=78.43 Aligned_cols=43 Identities=30% Similarity=0.632 Sum_probs=40.2
Q ss_pred CCCCEEEEEecCCch-HHHHHHHC-CCCccCCCCCcccccCCEEEE
Q 041173 44 KDGEEKNIKVPVGMS-MLEAVHEN-DIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 44 ~~G~~~~v~~~~G~t-LLeaa~~~-gI~l~~~CgG~g~CgTC~V~V 87 (117)
.+|+.++|++++|+| ||++|+++ |+++++.|++++ |++|+|+|
T Consensus 3 i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~-Cg~C~v~v 47 (78)
T PF00111_consen 3 INGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGG-CGTCRVRV 47 (78)
T ss_dssp TTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSS-SSTTEEEE
T ss_pred ECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCc-cCCcEEEE
Confidence 478888999999999 99999999 999999999876 99999998
No 13
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.13 E-value=1.7e-10 Score=95.50 Aligned_cols=53 Identities=34% Similarity=0.567 Sum_probs=44.6
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
...+++|++. .+..+++++++|+|||++|+++|+++++.|+|+|.|+||+|+|
T Consensus 32 ~~~~~~i~~~--~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v 84 (409)
T PRK05464 32 PSGDVTIKIN--GDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKV 84 (409)
T ss_pred cCccEEEEEc--CCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEE
Confidence 3445677763 2223589999999999999999999999999989999999998
No 14
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.12 E-value=8.7e-11 Score=78.50 Aligned_cols=62 Identities=31% Similarity=0.523 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC---------cccccCCEEEE--------EeeCCCCCe
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEG---------SLACSTCHVIK--------ITWPELDGV 96 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG---------~g~CgTC~V~V--------~l~~~~dGl 96 (117)
+++++|+| +|+ .+++++|+|||+|++++||.+++.|.. .|.|..|.|.| +.++..+||
T Consensus 1 ~~~v~i~i---dG~--~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM 75 (82)
T PF13510_consen 1 DKMVTITI---DGK--PVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGM 75 (82)
T ss_dssp -EEEEEEE---TTE--EEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTE
T ss_pred CCEEEEEE---CCE--EEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCc
Confidence 35677776 676 899999999999999999999988885 48999999999 667777888
Q ss_pred EEec
Q 041173 97 RLAF 100 (117)
Q Consensus 97 vv~l 100 (117)
+|..
T Consensus 76 ~V~T 79 (82)
T PF13510_consen 76 VVET 79 (82)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 8864
No 15
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.08 E-value=4.5e-10 Score=90.90 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
.+|++...+|....+++.+|+|||++|+++|+.+++.|+ .|.||+|+++|
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~-~G~Cg~C~~~~ 52 (340)
T PRK11872 3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCR-EGVCGTCQGRC 52 (340)
T ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC-CeECCCCEEEE
Confidence 356665467887789999999999999999999999999 68999999998
No 16
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.05 E-value=6e-10 Score=89.39 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+|. +.| +++++++|+|||++|+++||++++.|+ .|.||+|++++
T Consensus 3 ~~v~~~-~~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~ 49 (339)
T PRK07609 3 FQVTLQ-PSG--RQFTAEPDETILDAALRQGIHLPYGCK-NGACGSCKGRL 49 (339)
T ss_pred EEEEEe-cCC--eEEEeCCCCcHHHHHHHcCCCCCCCCC-CeECCCCEEEE
Confidence 468876 444 489999999999999999999999998 79999999998
No 17
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.02 E-value=7.7e-10 Score=71.84 Aligned_cols=41 Identities=34% Similarity=0.673 Sum_probs=37.9
Q ss_pred CCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 46 GEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 46 G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
|..++++++.|+|||++++++|+.+++.|++ +.|++|+|+|
T Consensus 7 ~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~-g~Cg~C~v~v 47 (84)
T cd00207 7 GSGVEVEVPEGETLLDAAREAGIDIPYSCRA-GACGTCKVEV 47 (84)
T ss_pred CCCEEEEECCCCcHHHHHHHcCCCcccCCCC-cCCcCCEEEE
Confidence 5556899999999999999999999999996 5999999998
No 18
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.96 E-value=1.6e-09 Score=84.19 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CcccccCCEEEE---------EeeCCCCCeEEecC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACE-----GSLACSTCHVIK---------ITWPELDGVRLAFP 101 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~Cg-----G~g~CgTC~V~V---------~l~~~~dGlvv~lP 101 (117)
|++|++ +|+ .+++++|+|||+||+++||.+|+.|. +.|.|+.|.|.| +.++..+||+|..=
T Consensus 3 ~v~i~i---dg~--~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~ 77 (234)
T PRK07569 3 VKTLTI---DDQ--LVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTN 77 (234)
T ss_pred eEEEEE---CCE--EEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEEC
Confidence 455554 676 69999999999999999999999997 578999999998 66777799998764
Q ss_pred C
Q 041173 102 A 102 (117)
Q Consensus 102 ~ 102 (117)
.
T Consensus 78 ~ 78 (234)
T PRK07569 78 T 78 (234)
T ss_pred C
Confidence 4
No 19
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=98.95 E-value=8.3e-10 Score=95.15 Aligned_cols=66 Identities=24% Similarity=0.458 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE-------------------------Eee
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK-------------------------ITW 90 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V-------------------------~l~ 90 (117)
|+.|||. |.|++ .+ .+|.|+|+||++.|+.+.+.|||+|+||.|+|.| +-+
T Consensus 1 ~p~v~f~-psgkr--~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~ 76 (614)
T COG3894 1 MPLVTFM-PSGKR--GE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQA 76 (614)
T ss_pred CceeEee-cCCCc--CC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeeh
Confidence 6789998 88984 55 9999999999999999999999999999999998 666
Q ss_pred CCCCCeEEecCCCcc
Q 041173 91 PELDGVRLAFPAATR 105 (117)
Q Consensus 91 ~~~dGlvv~lP~~~~ 105 (117)
+.+..+++.+|++++
T Consensus 77 ~v~gd~~i~ip~es~ 91 (614)
T COG3894 77 QVLGDLVIFIPPESR 91 (614)
T ss_pred hhcCceEEEcCchhh
Confidence 777889999999875
No 20
>PRK05713 hypothetical protein; Provisional
Probab=98.92 E-value=1.6e-09 Score=86.54 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
|.++++ .|+ +|++.+|+|||+||+++||.+++.|+ +|.||+|+++|
T Consensus 1 ~~~~~~---~~~--~~~~~~g~tlL~a~~~~gi~~~~~C~-~G~Cg~C~~~~ 46 (312)
T PRK05713 1 MPELRV---GER--RWSVPAGSNLLDALNAAGVAVPYSCR-AGSCHACLVRC 46 (312)
T ss_pred CCcEec---CCe--EEEECCCCcHHHHHHHcCCCCCcCCC-CcCCCCCeEEE
Confidence 445553 444 89999999999999999999999999 68999999998
No 21
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=98.80 E-value=7.9e-09 Score=84.83 Aligned_cols=49 Identities=29% Similarity=0.560 Sum_probs=43.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|.+. +...+++.++.|.+||.++..+||.+++.|||+|+|+.|+|+|
T Consensus 37 ~ti~IN--~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v 85 (410)
T COG2871 37 ITIKIN--GDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRV 85 (410)
T ss_pred eEEEeC--CChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEE
Confidence 456653 3345689999999999999999999999999999999999999
No 22
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=98.79 E-value=1.3e-08 Score=82.17 Aligned_cols=51 Identities=29% Similarity=0.462 Sum_probs=43.4
Q ss_pred CceEEEEEcCCCCEEE-EEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 35 DMVNVTFSDKDGEEKN-IKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~-v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
...+|+|. ..|.... +++++|+|||++|+++||++++.|++ |.|++|++++
T Consensus 261 ~~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~~-G~Cg~C~~~~ 312 (352)
T TIGR02160 261 DVSKVTVT-LDGRSTETSSLSRDESVLDAALRARPDLPFACKG-GVCGTCRAKV 312 (352)
T ss_pred CceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCCCCcCCCCC-ccCCCCEEEE
Confidence 45677776 4666544 67899999999999999999999995 8999999998
No 23
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=98.77 E-value=2e-08 Score=80.80 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
...++|++.+ .| +++++++|+|||++|+++||++++.|+ .|.||+|++++
T Consensus 246 ~~~~~v~~~~-~~--~~~~~~~~~~lL~~~~~~gi~~~~~C~-~G~Cg~C~~~~ 295 (332)
T PRK10684 246 TSGLTFTKLQ-PA--REFYAPVGTTLLEALESNKVPVVAACR-AGVCGCCKTKV 295 (332)
T ss_pred CCceEEEEec-CC--EEEEeCCCChHHHHHHHcCCCccCCCC-CcCCCCCEEEE
Confidence 4456777764 34 489999999999999999999999999 79999999998
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.51 E-value=2.3e-07 Score=83.20 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----cccccCCEEEE--------------EeeCCCCCe
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEG-----SLACSTCHVIK--------------ITWPELDGV 96 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG-----~g~CgTC~V~V--------------~l~~~~dGl 96 (117)
|++|+| +|+ .+++++|+|||+||+++||.+|+.|.- .|.|..|.|.| +.++..+||
T Consensus 1 ~~~i~i---dg~--~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~gm 75 (847)
T PRK08166 1 MATIHV---DGK--EYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDGT 75 (847)
T ss_pred CeEEEE---CCE--EEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCCC
Confidence 677776 566 799999999999999999999999972 57899999997 445666888
Q ss_pred EEecCC
Q 041173 97 RLAFPA 102 (117)
Q Consensus 97 vv~lP~ 102 (117)
+|....
T Consensus 76 ~v~t~~ 81 (847)
T PRK08166 76 FISIDD 81 (847)
T ss_pred EEEeCC
Confidence 887654
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.39 E-value=1e-06 Score=71.77 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCEEEEEe-cCCchHHHHHHHCCCCccCCCCC-----cccccCCEEEE---------EeeCCCCCeEEec
Q 041173 36 MVNVTFSDKDGEEKNIKV-PVGMSMLEAVHENDIELEGACEG-----SLACSTCHVIK---------ITWPELDGVRLAF 100 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~-~~G~tLLeaa~~~gI~l~~~CgG-----~g~CgTC~V~V---------~l~~~~dGlvv~l 100 (117)
.++|+| ||+ +|++ ++|+||||||+++||.||+.|-- .|.|..|-|.| +.++..+||+|..
T Consensus 68 ~~~I~I---DGk--~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T 142 (297)
T PTZ00305 68 RAIMFV---NKR--PVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIIT 142 (297)
T ss_pred ceEEEE---CCE--EEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEe
Confidence 345554 676 8999 89999999999999999998854 47799999998 6777789999987
Q ss_pred CC
Q 041173 101 PA 102 (117)
Q Consensus 101 P~ 102 (117)
-.
T Consensus 143 ~S 144 (297)
T PTZ00305 143 DS 144 (297)
T ss_pred CC
Confidence 44
No 26
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.34 E-value=1.2e-06 Score=77.62 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CcccccCCEEEE----------EeeCCCCCeEEec
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACE-----GSLACSTCHVIK----------ITWPELDGVRLAF 100 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~Cg-----G~g~CgTC~V~V----------~l~~~~dGlvv~l 100 (117)
|++|+| ||+ ++++++|+||||||+++||.||..|- -.|.|..|.|.| +.++..+||+|..
T Consensus 1 m~~~~I---dg~--~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T 75 (687)
T PRK09130 1 MVKLKV---DGK--EIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFT 75 (687)
T ss_pred CeEEEE---CCE--EEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEe
Confidence 678886 676 99999999999999999999999995 247899999988 6667779999976
Q ss_pred CC
Q 041173 101 PA 102 (117)
Q Consensus 101 P~ 102 (117)
-.
T Consensus 76 ~s 77 (687)
T PRK09130 76 NT 77 (687)
T ss_pred CC
Confidence 43
No 27
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.33 E-value=1.3e-06 Score=78.42 Aligned_cols=63 Identities=29% Similarity=0.444 Sum_probs=55.1
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CcccccCCEEEE---------EeeCCCCCeEEe
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACE-----GSLACSTCHVIK---------ITWPELDGVRLA 99 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~Cg-----G~g~CgTC~V~V---------~l~~~~dGlvv~ 99 (117)
.+|++|+| ||+ ++++++|+|||+||..+||.+|+.|. ..|.|.-|.|.| +.++..+||+|.
T Consensus 2 ~~~v~~~i---dg~--~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~ 76 (797)
T PRK07860 2 PDLVTLTI---DGV--EVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVK 76 (797)
T ss_pred CceEEEEE---CCE--EEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEE
Confidence 36888886 676 89999999999999999999999996 357899999998 778888999998
Q ss_pred cC
Q 041173 100 FP 101 (117)
Q Consensus 100 lP 101 (117)
.-
T Consensus 77 t~ 78 (797)
T PRK07860 77 TQ 78 (797)
T ss_pred eC
Confidence 74
No 28
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.29 E-value=1.7e-06 Score=78.33 Aligned_cols=62 Identities=23% Similarity=0.446 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCcccccCCEEEE-------EeeCCCCCeEEecCC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGAC-----EGSLACSTCHVIK-------ITWPELDGVRLAFPA 102 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~C-----gG~g~CgTC~V~V-------~l~~~~dGlvv~lP~ 102 (117)
|++|+| ||+ ++++++|+|||+||+++||.+|+.| ...|.|..|.|.| +.++..+||+|..-.
T Consensus 1 mv~i~I---dG~--~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s 74 (819)
T PRK08493 1 MITITI---NGK--ECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNT 74 (819)
T ss_pred CeEEEE---CCE--EEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecC
Confidence 667776 676 8999999999999999999999766 4468899999988 778888999997743
No 29
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.28 E-value=1.5e-06 Score=77.43 Aligned_cols=62 Identities=34% Similarity=0.575 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCcccccCCEEEE---------EeeCCCCCeEEecC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGAC-----EGSLACSTCHVIK---------ITWPELDGVRLAFP 101 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~C-----gG~g~CgTC~V~V---------~l~~~~dGlvv~lP 101 (117)
|++|++ ||+ +|++++|+||||||+++||+||+.| +--|.|..|-|.+ +.++..|||+|.+=
T Consensus 1 m~tI~I---DG~--ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~ 75 (693)
T COG1034 1 MVTITI---DGK--EIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTN 75 (693)
T ss_pred CeEEEE---CCE--EEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecC
Confidence 677876 676 9999999999999999999999765 5568999999999 78889999998664
Q ss_pred C
Q 041173 102 A 102 (117)
Q Consensus 102 ~ 102 (117)
.
T Consensus 76 s 76 (693)
T COG1034 76 S 76 (693)
T ss_pred C
Confidence 4
No 30
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.23 E-value=2.7e-06 Score=75.58 Aligned_cols=62 Identities=27% Similarity=0.512 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----cccccCCEEEE---------EeeCCCCCeEEecC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEG-----SLACSTCHVIK---------ITWPELDGVRLAFP 101 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG-----~g~CgTC~V~V---------~l~~~~dGlvv~lP 101 (117)
|++|+| ||+ ++++++|+|||+||+.+||.+|+.|-- .|.|.-|.|.| +.++..+||+|..=
T Consensus 1 m~~~~i---dg~--~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~t~ 75 (776)
T PRK09129 1 MVEIEI---DGK--KVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVFTR 75 (776)
T ss_pred CeEEEE---CCE--EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEEcC
Confidence 677776 676 899999999999999999999999973 36899999998 67888899999774
Q ss_pred C
Q 041173 102 A 102 (117)
Q Consensus 102 ~ 102 (117)
.
T Consensus 76 ~ 76 (776)
T PRK09129 76 S 76 (776)
T ss_pred C
Confidence 3
No 31
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.22 E-value=2.4e-06 Score=74.93 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----cccccCCEEEE---------EeeCCCCCeEEecC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEG-----SLACSTCHVIK---------ITWPELDGVRLAFP 101 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG-----~g~CgTC~V~V---------~l~~~~dGlvv~lP 101 (117)
+++|+| ||+ .+++++|+|||+||+++|+.++..|.. .|.|..|.|.| +.++..+||+|..-
T Consensus 3 ~v~~~i---dg~--~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~Gm~v~t~ 77 (652)
T PRK12814 3 TISLTI---NGR--SVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEGMVIETE 77 (652)
T ss_pred eEEEEE---CCE--EEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCCCEEEeC
Confidence 455554 676 899999999999999999999999973 68999999998 67788899999875
Q ss_pred CC
Q 041173 102 AA 103 (117)
Q Consensus 102 ~~ 103 (117)
.+
T Consensus 78 ~~ 79 (652)
T PRK12814 78 NA 79 (652)
T ss_pred cH
Confidence 44
No 32
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.20 E-value=2.9e-06 Score=76.50 Aligned_cols=66 Identities=32% Similarity=0.506 Sum_probs=56.1
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----cccccCCEEEE-------EeeCCCCCeEEec
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEG-----SLACSTCHVIK-------ITWPELDGVRLAF 100 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG-----~g~CgTC~V~V-------~l~~~~dGlvv~l 100 (117)
+.+|++|++ ||+ .+++++|+|||++|.++||.+|+.|-- -++|-+|.|.+ +-+...+||+|..
T Consensus 2 ~~~~i~vti---dg~--~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t 76 (978)
T COG3383 2 AEKMITVTI---DGR--SIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRT 76 (978)
T ss_pred CceeEEEEE---CCe--EEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEec
Confidence 356788887 676 899999999999999999999999953 47899999998 7788889999976
Q ss_pred CCC
Q 041173 101 PAA 103 (117)
Q Consensus 101 P~~ 103 (117)
-.+
T Consensus 77 ~s~ 79 (978)
T COG3383 77 NSE 79 (978)
T ss_pred ccH
Confidence 543
No 33
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.06 E-value=8.3e-06 Score=70.75 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=47.7
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCccCCCC-----CcccccCCEEEE----------EeeCCCCCeEEecCC
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIELEGACE-----GSLACSTCHVIK----------ITWPELDGVRLAFPA 102 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~l~~~Cg-----G~g~CgTC~V~V----------~l~~~~dGlvv~lP~ 102 (117)
||+ ++++++|+|||+||+++||.+|+.|. ..|.|..|.|.| +.++..|||+|..-.
T Consensus 4 dg~--~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~ 74 (603)
T TIGR01973 4 DGK--ELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNS 74 (603)
T ss_pred CCE--EEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCC
Confidence 566 89999999999999999999999996 357899999998 455666999987643
No 34
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.75 E-value=5.3e-05 Score=64.02 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=43.0
Q ss_pred EEEEecCCchHHHHHHH------CCCCccCCCCCcccccCCEEEE-------EeeCCCCCeEEecCC
Q 041173 49 KNIKVPVGMSMLEAVHE------NDIELEGACEGSLACSTCHVIK-------ITWPELDGVRLAFPA 102 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~------~gI~l~~~CgG~g~CgTC~V~V-------~l~~~~dGlvv~lP~ 102 (117)
.++++++|+|||++|++ .++.+++.|+ .|.|++|.|.| +.+...+||+|..+.
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v~G~~~laC~~~~~~~~~i~~~~ 88 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCGSCAVTINGEPVLACKTEVEDGMIIEPLD 88 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCCCCEEEECCeEecccccCCCCCCEEEecC
Confidence 45666699999999995 6667788998 68999999998 666666888888664
No 35
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.74 E-value=8.9e-05 Score=55.66 Aligned_cols=49 Identities=16% Similarity=0.436 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCC-CccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDI-ELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI-~l~~~CgG~g~CgTC~V~V 87 (117)
..|+|. -+|+.+++++.++++||+.+++.|+ ..-..|+ .|.||.|-|.|
T Consensus 7 ~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~-~G~CGACtVlv 56 (159)
T PRK09908 7 ITIECT-INGMPFQLHAAPGTPLSELLREQGLLSVKQGCC-VGECGACTVLV 56 (159)
T ss_pred eeEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcC-CCCCCCcEEEE
Confidence 456665 5799899999999999999999877 3667898 58999999999
No 36
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.54 E-value=0.0004 Score=54.48 Aligned_cols=65 Identities=18% Similarity=0.406 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE-------EeeCC--CCCeEEecCCC
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK-------ITWPE--LDGVRLAFPAA 103 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V-------~l~~~--~dGlvv~lP~~ 103 (117)
.+|+|. -+|+.+++++.++++||++++++ ++. ....|+ .|.||.|.|.| ++... .+|..|+.-+.
T Consensus 50 ~~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~-~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEG 125 (217)
T PRK11433 50 SPVTLK-VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCD-HGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEG 125 (217)
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCC-CCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCC
Confidence 445555 57988899999999999999985 553 567798 58999999988 33333 57776655443
No 37
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.36 E-value=0.00051 Score=51.02 Aligned_cols=58 Identities=14% Similarity=0.333 Sum_probs=44.1
Q ss_pred CCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE---------EeeCCCCCeEEecCC
Q 041173 44 KDGEEKNIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK---------ITWPELDGVRLAFPA 102 (117)
Q Consensus 44 ~~G~~~~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V---------~l~~~~dGlvv~lP~ 102 (117)
-+|+.++++++++++||+.+++. |+. ....|+ .|.||.|-|.| .+....+|-.|+.-+
T Consensus 6 vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~-~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiE 74 (148)
T TIGR03193 6 VNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCD-GGECGACTVLVDGRPRLACSTLAHRVAGRKVETVE 74 (148)
T ss_pred ECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCC-CCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeC
Confidence 36888899999999999999974 763 667898 68999999999 334445666554433
No 38
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.25 E-value=0.00025 Score=54.57 Aligned_cols=39 Identities=18% Similarity=0.464 Sum_probs=31.9
Q ss_pred EEEEEecCCchHHHHHHHCC------CCccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHEND------IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~g------I~l~~~CgG~g~CgTC~V~V 87 (117)
.+++++.+|+|||+++...+ +.....|+ .|.||+|.|.|
T Consensus 16 ~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~v 60 (220)
T TIGR00384 16 SYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICGSCAMNV 60 (220)
T ss_pred EEEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCCCCeeEE
Confidence 35678889999999999855 33457897 68999999998
No 39
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.04 E-value=0.002 Score=50.77 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=30.0
Q ss_pred EEEEecCCchHHHHHHHC------CCCccCCCCCcccccCCEEEE
Q 041173 49 KNIKVPVGMSMLEAVHEN------DIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~------gI~l~~~CgG~g~CgTC~V~V 87 (117)
+.+++.++.|||+++... .+.....|+ .|.||+|.|.|
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~I 70 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICGSCGMMV 70 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCCCCcceE
Confidence 466777999999999653 234457898 48999999999
No 40
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=97.03 E-value=0.0021 Score=45.48 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=28.9
Q ss_pred EEEEecCCchHHHHHHHC------CCCccCCCCCcccccCCEEEE
Q 041173 49 KNIKVPVGMSMLEAVHEN------DIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~------gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|++.++.|+|+++..- -|.+.++|+ .|.||+|-+.|
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr-~giCGsCam~I 64 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCR-SGICGSCAMRI 64 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSS-SSSSSTTEEEE
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCC-CCCCCCCEEEE
Confidence 578888999999998742 345678999 58999999999
No 41
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.00 E-value=0.0018 Score=51.35 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=31.1
Q ss_pred EEEEEecCCchHHHHHHHCC-------------CCccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHEND-------------IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~g-------------I~l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.++.|||+|+..-. |.+.++|+ .|.||+|-+.|
T Consensus 24 ~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~I 75 (249)
T PRK08640 24 EFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVI 75 (249)
T ss_pred EEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEE
Confidence 35677778999999988431 44668999 58999999999
No 42
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=96.98 E-value=0.0012 Score=51.93 Aligned_cols=39 Identities=15% Similarity=0.468 Sum_probs=31.4
Q ss_pred EEEEEecCCchHHHHHHHCC------CCccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHEND------IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~g------I~l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.++.|||+|+..-. |.+.++|+ .|.||+|-+.|
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr-~giCGsCam~I 69 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCR-AGICGSCAMVI 69 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCC-CCCCCCceeEE
Confidence 35677779999999998632 34568999 57999999999
No 43
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.95 E-value=0.0028 Score=50.92 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=32.8
Q ss_pred EEEEEecCCchHHHHHHHCCCCc------cCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHENDIEL------EGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~gI~l------~~~CgG~g~CgTC~V~V 87 (117)
.++|++.+|+|||+++...+..+ ...|+ .|.||.|-|.|
T Consensus 26 ~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I 70 (279)
T PRK12576 26 EYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI 70 (279)
T ss_pred EEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCCCCEEEE
Confidence 46788899999999999976543 36796 78999999999
No 44
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.93 E-value=0.0025 Score=50.74 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=32.8
Q ss_pred EEEEEecCCchHHHHHHHCCC------CccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHENDI------ELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~gI------~l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.++.|||+++..-+. .+...|+ .|.||+|-|.|
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~I 65 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEI 65 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCC-CCcCCCCEEEE
Confidence 367888899999999999664 4567898 68999999999
No 45
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=96.88 E-value=0.0022 Score=47.67 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=44.0
Q ss_pred CCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE---------EeeCCCCCeEEecCCC
Q 041173 44 KDGEEKNIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK---------ITWPELDGVRLAFPAA 103 (117)
Q Consensus 44 ~~G~~~~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V---------~l~~~~dGlvv~lP~~ 103 (117)
-+|+.+++++.++++|++.+++. ++. ....|+ .|.||.|.|.| .+.-..+|-.|+.-+.
T Consensus 8 vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~-~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEg 77 (151)
T TIGR03198 8 VNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCG-IGRCGACSVLIDGKLANACLTMAYQADGHEITTIEG 77 (151)
T ss_pred ECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCC-CCcCCccEEEECCcEEechHHHHHHhcCCEEEecCC
Confidence 37888899999999999999984 774 566798 58999999999 2233346665554443
No 46
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.86 E-value=0.0033 Score=51.47 Aligned_cols=39 Identities=18% Similarity=0.458 Sum_probs=33.9
Q ss_pred EEEEEecCCchHHHHHHHCCCCcc------CCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHENDIELE------GACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~gI~l~------~~CgG~g~CgTC~V~V 87 (117)
.++|++.+|+|||+++...++.++ ..|+ .+.||+|-|.|
T Consensus 20 ~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~i 64 (329)
T PRK12577 20 TYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRI 64 (329)
T ss_pred EEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEE
Confidence 467888999999999999998774 4698 57999999999
No 47
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.71 E-value=0.0035 Score=48.66 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=32.0
Q ss_pred EEEEEec-CCchHHHHHHHCC-CC-----ccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVP-VGMSMLEAVHEND-IE-----LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~-~G~tLLeaa~~~g-I~-----l~~~CgG~g~CgTC~V~V 87 (117)
.++|++. +|+|||+++...+ .. ....|+ .|.||+|.|.|
T Consensus 19 ~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~v 64 (232)
T PRK05950 19 TYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNI 64 (232)
T ss_pred EEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCC-CCCCCCCEEEE
Confidence 3578888 9999999999987 32 246896 68999999999
No 48
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.50 E-value=0.005 Score=56.92 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=45.0
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE---------EeeCCCCCeEEecCC
Q 041173 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK---------ITWPELDGVRLAFPA 102 (117)
Q Consensus 39 Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V---------~l~~~~dGlvv~lP~ 102 (117)
|+|. -+|+.+++++.++++||+.+++.|+- .-..|.+.|.||.|-|.| .+.-..+|-.|+.-+
T Consensus 3 i~~~-vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tve 75 (956)
T PRK09800 3 IHFT-LNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAE 75 (956)
T ss_pred EEEE-ECCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecC
Confidence 4554 47898999999999999999996654 223344578999999999 333344666555444
No 49
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=96.40 E-value=0.0053 Score=48.68 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=29.9
Q ss_pred EEEEecCCchHHHHHHHCC------CCccCCCCCcccccCCEEEE
Q 041173 49 KNIKVPVGMSMLEAVHEND------IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~g------I~l~~~CgG~g~CgTC~V~V 87 (117)
++|+..+|.|||+|+..-. +.+..+|. .|.||+|-+.|
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~I 65 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCR-EGICGSCAMNI 65 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhcc-CCcCCcceeEE
Confidence 4566668999999987522 34568999 57999999999
No 50
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=96.39 E-value=0.0056 Score=49.47 Aligned_cols=56 Identities=13% Similarity=0.329 Sum_probs=36.7
Q ss_pred CCCCCceEEEEE--cCC-C-----CEEEEEecC-CchHHHHHHHC--C----CCccCCCCCcccccCCEEEE
Q 041173 31 SIQKDMVNVTFS--DKD-G-----EEKNIKVPV-GMSMLEAVHEN--D----IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 31 ~~~~~mv~Vt~~--~~~-G-----~~~~v~~~~-G~tLLeaa~~~--g----I~l~~~CgG~g~CgTC~V~V 87 (117)
++..++++|++. +++ + ..++|++.+ |.|||+++..- . |.+.++|+ .|.||+|-+.|
T Consensus 38 ~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~I 108 (276)
T PLN00129 38 SKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNI 108 (276)
T ss_pred CCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEE
Confidence 345556766655 332 1 123455444 79999998762 2 23567999 58999999999
No 51
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=96.07 E-value=0.02 Score=42.95 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=39.0
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHH-CCCC-ccCCCCCcccccCCEEEE
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHE-NDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~-~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
.|++. -+|+.+++++.+..+|++++++ -|+. .-..|+ .|.||.|-|.+
T Consensus 3 ~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~-~g~CGACtVlv 52 (156)
T COG2080 3 PITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCG-HGQCGACTVLV 52 (156)
T ss_pred cEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCC-CccCCceEEEE
Confidence 34444 4799999999999999999995 4664 456787 78999999998
No 52
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.98 E-value=0.025 Score=52.16 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=47.4
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCCcc-----------CCCCCcccccCCEEEE------------EeeCCCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELE-----------GACEGSLACSTCHVIK------------ITWPELD 94 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~-----------~~CgG~g~CgTC~V~V------------~l~~~~d 94 (117)
.|+|. -||+ .+++.+|+||..|++++|+.+- .-|.| +.|..|.|.| ++++--+
T Consensus 12 ~~~~~-~dg~--~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~-~~~~~c~v~i~~~~~~~~~~~ac~~~~~~ 87 (985)
T TIGR01372 12 PLRFT-FDGK--SYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAG-VEEPNALVTVGSGAQREPNTRATTQELYD 87 (985)
T ss_pred eEEEE-ECCE--EeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccC-ccCCCeEEEECCCcCCCCCccceeEEccc
Confidence 34444 3787 8999999999999999998642 13874 5789999997 6677779
Q ss_pred CeEEecCC
Q 041173 95 GVRLAFPA 102 (117)
Q Consensus 95 Glvv~lP~ 102 (117)
||+|+-..
T Consensus 88 gm~~~~~~ 95 (985)
T TIGR01372 88 GLVATSQN 95 (985)
T ss_pred CCEEeccc
Confidence 99997654
No 53
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.75 E-value=0.015 Score=53.81 Aligned_cols=58 Identities=7% Similarity=0.161 Sum_probs=43.5
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCC-ccC-CCCCcccccCCEEEE---------EeeCCCCCeEEecCCC
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIE-LEG-ACEGSLACSTCHVIK---------ITWPELDGVRLAFPAA 103 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~-l~~-~CgG~g~CgTC~V~V---------~l~~~~dGlvv~lP~~ 103 (117)
+|+.+++++..+++||+.+++.|+. .-. .|+ .|.||.|-|.| .+.-..+|-.|+.-+.
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~-~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tieg 72 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDDG-FGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAES 72 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCC-cccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCc
Confidence 6888899999999999999998775 444 455 78999999999 3333446666655443
No 54
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=95.65 E-value=0.0089 Score=47.49 Aligned_cols=38 Identities=18% Similarity=0.466 Sum_probs=30.1
Q ss_pred EEEE-ecCCchHHHHHHHC----------CCCccCCCCCcccccCCEEEE
Q 041173 49 KNIK-VPVGMSMLEAVHEN----------DIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 49 ~~v~-~~~G~tLLeaa~~~----------gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+ +.++.|||+|+..- .|.+.++|+ .|.||+|-+.|
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~I 70 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVI 70 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEE
Confidence 4566 56899999999742 255678999 57999999999
No 55
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.02 E-value=0.034 Score=47.69 Aligned_cols=43 Identities=21% Similarity=0.507 Sum_probs=36.3
Q ss_pred CCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE
Q 041173 44 KDGEEKNI-KVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 44 ~~G~~~~v-~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V 87 (117)
-+|+.+++ ++.++++||+.++++ |+. .-..|+ .|.||.|-|.|
T Consensus 5 ~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~-~G~CGaCtv~~ 50 (467)
T TIGR02963 5 LNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCA-EGDCGACTVVV 50 (467)
T ss_pred ECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccC-CCCCCceEEEE
Confidence 36888888 699999999999974 774 667898 58999999998
No 56
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=94.39 E-value=0.068 Score=42.08 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=27.2
Q ss_pred EEEEecC-CchHHHHHHHCC-----CCccCCCCCcccccCCEEEE
Q 041173 49 KNIKVPV-GMSMLEAVHEND-----IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 49 ~~v~~~~-G~tLLeaa~~~g-----I~l~~~CgG~g~CgTC~V~V 87 (117)
++|++.+ +.|||+++..-. |.+.++|+ .|.||+|-+.|
T Consensus 25 y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr-~giCGsCa~~i 68 (235)
T PRK12575 25 YEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCR-EGICGSDAMNI 68 (235)
T ss_pred EEecCCCCCCcHHHHHHHHHhcCCCeeeeccCC-CCCCCCCeeEE
Confidence 3455444 468999987532 33457899 57999999999
No 57
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=93.86 E-value=0.13 Score=47.16 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=42.2
Q ss_pred CCCEEEEEecCCchHHHHHHH-CCC-CccCCCCCcccccCCEEEE---------EeeCCCCCeEEecCCC
Q 041173 45 DGEEKNIKVPVGMSMLEAVHE-NDI-ELEGACEGSLACSTCHVIK---------ITWPELDGVRLAFPAA 103 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~-~gI-~l~~~CgG~g~CgTC~V~V---------~l~~~~dGlvv~lP~~ 103 (117)
+|+ .+++.++++||+.+++ .|+ .....|+ .|.||.|-|.| .+.-..+|-.|+.-+.
T Consensus 6 ng~--~~~~~~~~~l~~~lr~~~~~~~~k~gc~-~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~eg 72 (848)
T TIGR03311 6 NGR--EVDVNEEKKLLEFLREDLRLTGVKNGCG-EGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEG 72 (848)
T ss_pred CCE--EeeCCCCCcHHHHHHHhcCCCcCCCCCC-CCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCC
Confidence 464 7888899999999997 487 4677898 68999999999 3334446666655443
No 58
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=91.99 E-value=0.38 Score=42.80 Aligned_cols=54 Identities=20% Similarity=0.421 Sum_probs=43.4
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCccCCCCC-----cccccCCEEEE---------EeeCCCCCeEEec
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIELEGACEG-----SLACSTCHVIK---------ITWPELDGVRLAF 100 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG-----~g~CgTC~V~V---------~l~~~~dGlvv~l 100 (117)
||. .|.+.+|.|+|+|+...|++||-.|-- .|-|-.|.|.| +--+.|.||.+..
T Consensus 38 d~~--~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g~~ikt 105 (708)
T KOG2282|consen 38 DDQ--SVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKGWKIKT 105 (708)
T ss_pred CCe--eEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCCceeec
Confidence 454 899999999999999999999988843 25688999988 5556678887754
No 59
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.47 E-value=0.27 Score=47.18 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=36.7
Q ss_pred EEEEcCCCCEE-EEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE
Q 041173 39 VTFSDKDGEEK-NIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 39 Vt~~~~~G~~~-~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V 87 (117)
|+|. -+|+.+ ..++..++|||+.+++. |+. .-.-|+ .|.||.|-|.|
T Consensus 3 ~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~-~G~CGaCtV~~ 52 (1330)
T TIGR02969 3 LLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCG-GGGCGACTVMI 52 (1330)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcC-CCCCCCcEEEE
Confidence 4444 468765 45789999999999974 774 566788 58999999998
No 60
>PLN00192 aldehyde oxidase
Probab=91.21 E-value=0.38 Score=46.29 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=37.8
Q ss_pred EEEEcCCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE
Q 041173 39 VTFSDKDGEEKNI-KVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 39 Vt~~~~~G~~~~v-~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V 87 (117)
|+|. -+|+.+++ ++..++|||+.+++. |+. .-.-|+ .|.||.|-|.|
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~-~G~CGaCtV~v 55 (1344)
T PLN00192 6 LVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCG-EGGCGACVVLL 55 (1344)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCC-CCcCCCcEEEE
Confidence 4444 47888888 588999999999974 774 566788 67899999998
No 61
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=84.10 E-value=2 Score=28.06 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEcCCCCEEEEEecCCchHHHHHH
Q 041173 41 FSDKDGEEKNIKVPVGMSMLEAVH 64 (117)
Q Consensus 41 ~~~~~G~~~~v~~~~G~tLLeaa~ 64 (117)
+.-|+|....|.+++|+|++|++.
T Consensus 4 V~LPng~~t~V~vrpg~ti~d~L~ 27 (72)
T cd01760 4 VYLPNGQRTVVPVRPGMSVRDVLA 27 (72)
T ss_pred EECcCCCeEEEEECCCCCHHHHHH
Confidence 334899999999999999999854
No 62
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=80.83 E-value=3.5 Score=26.57 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
++|.+ |+|....|.+++|+|+.|++..
T Consensus 3 ~~v~L--P~~q~t~V~vrpg~ti~d~L~~ 29 (71)
T PF02196_consen 3 CRVHL--PNGQRTVVQVRPGMTIRDALSK 29 (71)
T ss_dssp EEEEE--TTTEEEEEEE-TTSBHHHHHHH
T ss_pred EEEEC--CCCCEEEEEEcCCCCHHHHHHH
Confidence 44554 8999889999999999998654
No 63
>smart00455 RBD Raf-like Ras-binding domain.
Probab=77.77 E-value=5.8 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.4
Q ss_pred cCCCCEEEEEecCCchHHHHHH
Q 041173 43 DKDGEEKNIKVPVGMSMLEAVH 64 (117)
Q Consensus 43 ~~~G~~~~v~~~~G~tLLeaa~ 64 (117)
-|+|....|.+++|+||.|++.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~ 27 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALA 27 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHH
Confidence 3899999999999999999854
No 64
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=75.61 E-value=2.1 Score=33.10 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=22.8
Q ss_pred chHHHHHHHCCCC---c-----cCCCCCcccccCCEEE
Q 041173 57 MSMLEAVHENDIE---L-----EGACEGSLACSTCHVI 86 (117)
Q Consensus 57 ~tLLeaa~~~gI~---l-----~~~CgG~g~CgTC~V~ 86 (117)
+.+.+++++.|++ + ...|.|.|.|++|+|.
T Consensus 203 ~~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 203 RFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 4678888899986 3 2346668999999986
No 65
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=75.21 E-value=5.9 Score=24.47 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.0
Q ss_pred cCCCCEEEEEecCCchHHHHHHHCCCCccCCCC
Q 041173 43 DKDGEEKNIKVPVGMSMLEAVHENDIELEGACE 75 (117)
Q Consensus 43 ~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~Cg 75 (117)
.|+|. ..+.+.|.|.+|+|..-+-.+...|-
T Consensus 5 lpdG~--~~~~~~g~T~~d~A~~I~~~l~~~~~ 35 (60)
T PF02824_consen 5 LPDGS--IKELPEGSTVLDVAYSIHSSLAKRAV 35 (60)
T ss_dssp ETTSC--EEEEETTBBHHHHHHHHSHHHHHCEE
T ss_pred CCCCC--eeeCCCCCCHHHHHHHHCHHHHhhee
Confidence 38998 67799999999999987655554443
No 66
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=72.69 E-value=9.5 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
|++|+|.+..|+...+++.+..|+.+. +...|++.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~ 39 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRP 39 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 788999988899888999999988765 23346543
No 67
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=70.67 E-value=3.7 Score=31.12 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=22.0
Q ss_pred chHHHHHHHCCCCc-----c-CCCCCcccccCCEEEE
Q 041173 57 MSMLEAVHENDIEL-----E-GACEGSLACSTCHVIK 87 (117)
Q Consensus 57 ~tLLeaa~~~gI~l-----~-~~CgG~g~CgTC~V~V 87 (117)
+.+.+++++.|++. . ..|| .|.|++|.|..
T Consensus 180 ~~~~~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~ 215 (233)
T cd06220 180 YKVLEILDERGVRAQFSLERYMKCG-IGICGSCCIDP 215 (233)
T ss_pred HHHHHHHHhcCCcEEEEecccccCc-CCCcCccEecc
Confidence 36777888888842 1 2465 89999999984
No 68
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=70.56 E-value=3.3 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=20.9
Q ss_pred hHHHHHHHCCCCc-----cC-CCCCcccccCCEEEE
Q 041173 58 SMLEAVHENDIEL-----EG-ACEGSLACSTCHVIK 87 (117)
Q Consensus 58 tLLeaa~~~gI~l-----~~-~CgG~g~CgTC~V~V 87 (117)
.+.+++.++|++. .. .|| .|.|++|.+.+
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~ 229 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCG-IGACGACVCDT 229 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCc-CcccCcCCccc
Confidence 5667777888753 12 465 79999999974
No 69
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=69.78 E-value=7.5 Score=25.88 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=18.2
Q ss_pred CCCCEEEEEecCCchHHHHHHH
Q 041173 44 KDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 44 ~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
|+..+..|++.+|+||.+|+..
T Consensus 7 PnqQrT~V~vrpG~tl~daL~K 28 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAK 28 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHH
Confidence 6666678999999999988664
No 70
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=66.05 E-value=3.3 Score=32.25 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=20.4
Q ss_pred hHHHHHHHCCCCcc--------CCCCCcccccCCEEE
Q 041173 58 SMLEAVHENDIELE--------GACEGSLACSTCHVI 86 (117)
Q Consensus 58 tLLeaa~~~gI~l~--------~~CgG~g~CgTC~V~ 86 (117)
.+.+.+++.|++-. ..|.|.|.|+.|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 204 FTVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 46677788898521 235558999999875
No 71
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=65.15 E-value=7.1 Score=29.97 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=21.7
Q ss_pred hHHHHHHHCCCCcc-----CCCCCcccccCCEEEE
Q 041173 58 SMLEAVHENDIELE-----GACEGSLACSTCHVIK 87 (117)
Q Consensus 58 tLLeaa~~~gI~l~-----~~CgG~g~CgTC~V~V 87 (117)
.+.+++++.|++.. ..|.|.|.|++|.+..
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~ 228 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACGIGACLGCVVKT 228 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCccceecccEEEe
Confidence 67777888899732 2344479999999984
No 72
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=65.14 E-value=17 Score=23.01 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
.|++|++. ..+...+++++++.|+.+.+..-+++.
T Consensus 3 ~mm~v~vn-g~~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 3 LMIRVKVI-GRGIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred eEEEEEEe-ccccceEEEcCCCCcHHHHHHHcCCCC
Confidence 46777775 222356888899999999999888854
No 73
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=63.23 E-value=9.8 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=23.5
Q ss_pred eEEEEEcCCCC-EEEEEecCCchHHHHHHHCCCC
Q 041173 37 VNVTFSDKDGE-EKNIKVPVGMSMLEAVHENDIE 69 (117)
Q Consensus 37 v~Vt~~~~~G~-~~~v~~~~G~tLLeaa~~~gI~ 69 (117)
+.|.+-.++.. ..++++++|.|+.+|+.+.||.
T Consensus 3 VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 3 VEVAYALPERQVILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEEECCCeEEEEEEECCCcCcHHHHHHHcCch
Confidence 44555545433 2478999999999999999994
No 74
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=63.16 E-value=24 Score=30.72 Aligned_cols=50 Identities=20% Similarity=0.516 Sum_probs=36.8
Q ss_pred ceEEEEEcCCCCEEEE-EecCCchHHHHHH-HCCCC-ccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNI-KVPVGMSMLEAVH-ENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v-~~~~G~tLLeaa~-~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
|-.|.|+ .+|+.+.+ .+.+.+|||+-++ +.++- ----|. .|-||.|-|.|
T Consensus 6 ~~~irf~-lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCA-EGDCGACTVlV 58 (493)
T COG4630 6 RNTIRFL-LNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCA-EGDCGACTVLV 58 (493)
T ss_pred cceeEEE-ecCceEEeecCCcchHHHHHHHHhccccccccccc-CCCcCceEEEE
Confidence 4467777 46665554 5778999999998 67774 334576 67899999998
No 75
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=62.88 E-value=14 Score=24.47 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCCCEEEEEecCCchHHHHHH----HCCCC
Q 041173 44 KDGEEKNIKVPVGMSMLEAVH----ENDIE 69 (117)
Q Consensus 44 ~~G~~~~v~~~~G~tLLeaa~----~~gI~ 69 (117)
|||.+..|.+.+|+||.|++. ..|+.
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllekRgl~ 36 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEKRGIN 36 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHcCCC
Confidence 899988999999999888754 45554
No 76
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=62.65 E-value=14 Score=22.59 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
+|+ .+++++|.||.+++...|++.
T Consensus 6 NG~--~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 6 NGE--PRELPDGESVAALLAREGLAG 29 (66)
T ss_pred CCe--EEEcCCCCCHHHHHHhcCCCC
Confidence 466 678889999999999988853
No 77
>PLN02906 xanthine dehydrogenase
Probab=60.39 E-value=9.9 Score=36.82 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=24.7
Q ss_pred CchHHHHHHHCCCC-ccCCCCCcccccCCEEEE
Q 041173 56 GMSMLEAVHENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 56 G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
.+|||+.+++.|+. .-.-|+ .|.||.|-|.|
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~-~g~CGaCtv~~ 32 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCG-EGGCGACTVMV 32 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcC-CCCCCCeEEEE
Confidence 36899999985553 456788 58999999998
No 78
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=59.80 E-value=6.3 Score=30.25 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=21.3
Q ss_pred hHHHHHHHCCCCcc------CCCCCcccccCCEEE
Q 041173 58 SMLEAVHENDIELE------GACEGSLACSTCHVI 86 (117)
Q Consensus 58 tLLeaa~~~gI~l~------~~CgG~g~CgTC~V~ 86 (117)
.+.+.+.++|++.. ..|| .|.|+.|.|.
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~ 227 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDG-TGMCGACRVT 227 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCc-cceeeeEEEE
Confidence 46677778899742 3476 8999999997
No 79
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=58.63 E-value=5 Score=31.30 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=20.8
Q ss_pred chHHHHHHHCCCCcc--------CCCCCcccccCCEEE
Q 041173 57 MSMLEAVHENDIELE--------GACEGSLACSTCHVI 86 (117)
Q Consensus 57 ~tLLeaa~~~gI~l~--------~~CgG~g~CgTC~V~ 86 (117)
+.+.+.+++.|++-. -.|.|.|.|++|.|.
T Consensus 205 ~~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 205 KFTVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 356777788898521 124458999999975
No 80
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=58.48 E-value=16 Score=24.45 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCCCEEEEEecCCchHHHHHH
Q 041173 44 KDGEEKNIKVPVGMSMLEAVH 64 (117)
Q Consensus 44 ~~G~~~~v~~~~G~tLLeaa~ 64 (117)
|+|...++.+++|+|++|.+.
T Consensus 7 Pn~~~~~v~vrp~~tv~dvLe 27 (77)
T cd01818 7 PDNQPVLTYLRPGMSVEDFLE 27 (77)
T ss_pred CCCceEEEEECCCCCHHHHHH
Confidence 889999999999999998754
No 81
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=56.43 E-value=8.1 Score=30.42 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=21.0
Q ss_pred hHHHHHHHCCCCcc------CCCCCcccccCCEEE
Q 041173 58 SMLEAVHENDIELE------GACEGSLACSTCHVI 86 (117)
Q Consensus 58 tLLeaa~~~gI~l~------~~CgG~g~CgTC~V~ 86 (117)
.+.+++.++|+++. ..|| .|.|+.|.|.
T Consensus 195 ~v~~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~ 228 (281)
T PRK06222 195 FVAELTKPYGIKTIVSLNPIMVDG-TGMCGACRVT 228 (281)
T ss_pred HHHHHHHhcCCCEEEECcccccCc-ccccceeEEE
Confidence 46677778898642 3585 8999999996
No 82
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=54.40 E-value=45 Score=32.51 Aligned_cols=42 Identities=17% Similarity=0.501 Sum_probs=28.5
Q ss_pred CCCEEEEE-ecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE
Q 041173 45 DGEEKNIK-VPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 45 ~G~~~~v~-~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V 87 (117)
.|++.+++ ++++.||+.-++++ ++- -..-|+. |.||.|-|.|
T Consensus 8 NG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~E-GGCGaCtv~l 52 (1257)
T KOG0430|consen 8 NGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGE-GGCGACTVVL 52 (1257)
T ss_pred CCEEeeEecCCcchhHHHHHHHhcCCcceeeccCC-CCccceEEEE
Confidence 57765555 45677777776552 442 4557985 6799999988
No 83
>PRK07440 hypothetical protein; Provisional
Probab=52.93 E-value=33 Score=21.81 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
+++|++ .|+ ..+++++.||.+.+...+++.
T Consensus 4 ~m~i~v---NG~--~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 4 PITLQV---NGE--TRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ceEEEE---CCE--EEEcCCCCCHHHHHHHcCCCC
Confidence 566776 465 688889999999999888854
No 84
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=51.54 E-value=12 Score=29.57 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=23.2
Q ss_pred chHHHHHHHCCCC---c------cCCCCCcccccCCEEEE
Q 041173 57 MSMLEAVHENDIE---L------EGACEGSLACSTCHVIK 87 (117)
Q Consensus 57 ~tLLeaa~~~gI~---l------~~~CgG~g~CgTC~V~V 87 (117)
+.+.+.+++.|++ + ...|| .|.|+.|+|..
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~ 263 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGT 263 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhccccc-CcccCCCccCC
Confidence 4688888889985 2 23698 78999999984
No 85
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=49.67 E-value=35 Score=20.63 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=17.6
Q ss_pred EEEEecCCchHHHHHHHCCCCcc
Q 041173 49 KNIKVPVGMSMLEAVHENDIELE 71 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~gI~l~ 71 (117)
-.+++..|.||+|++..+|=..+
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~ 34 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTP 34 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBT
T ss_pred EEEEECCCCcHHHHHHHhCCCCC
Confidence 47888899999999998876433
No 86
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=48.89 E-value=9.6 Score=30.59 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=18.8
Q ss_pred chHHHHHHHCCCCccCCCCCc
Q 041173 57 MSMLEAVHENDIELEGACEGS 77 (117)
Q Consensus 57 ~tLLeaa~~~gI~l~~~CgG~ 77 (117)
.-|+++|++.|+++.+.|+|.
T Consensus 97 ~aLi~~ALe~~iPILgICRG~ 117 (243)
T COG2071 97 LALIRAALERGIPILGICRGL 117 (243)
T ss_pred HHHHHHHHHcCCCEEEEccch
Confidence 368999999999999999983
No 87
>PRK06437 hypothetical protein; Provisional
Probab=47.94 E-value=45 Score=20.97 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
.++.++++++++.|+.+.+...|++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~~ 34 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLDE 34 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCCC
Confidence 45667899999999999999998863
No 88
>PRK01777 hypothetical protein; Validated
Probab=47.22 E-value=58 Score=22.19 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEecCCchHHHHHHHCCCCcc
Q 041173 49 KNIKVPVGMSMLEAVHENDIELE 71 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~gI~l~ 71 (117)
..+++++|.|+.+|+...||...
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCcc
Confidence 57889999999999999999644
No 89
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=46.61 E-value=24 Score=22.53 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=14.9
Q ss_pred EcCCCCEEEEEecCCchHHHHHHH
Q 041173 42 SDKDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 42 ~~~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
+.+++.+..|.+.++.+|.+++.+
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~e 25 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEE 25 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHH
T ss_pred CccCCcEEEEEECCCCCHHHHHHH
Confidence 347888899999999988777654
No 90
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=43.28 E-value=54 Score=19.97 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=20.9
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+|++...+|+...+++...+|+.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~l 26 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHH
Confidence 5777778899889999999988765
No 91
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=42.52 E-value=60 Score=18.56 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 39 VTFSDKDGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 39 Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
|++. -+|+.+++. -...|+-+++.++||.+
T Consensus 2 Vtv~-~dG~~~~v~-T~a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 2 VTVT-VDGKEKTVY-TTASTVGDALKELGITL 31 (43)
T ss_pred EEEE-ECCEEEEEE-eCCCCHHHHHHhCCCCC
Confidence 4554 378755444 35789999999999986
No 92
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=42.27 E-value=57 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+|++....|+...+++...+|+.+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5667777899889999999988775
No 93
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=42.21 E-value=58 Score=19.61 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+|.+...+|...++++...+|+.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~l 26 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDL 26 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5667778898889999999887765
No 94
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=41.53 E-value=25 Score=31.60 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=21.2
Q ss_pred hHHHHHHHCCCCc------cCCCCCcccccCCEEE
Q 041173 58 SMLEAVHENDIEL------EGACEGSLACSTCHVI 86 (117)
Q Consensus 58 tLLeaa~~~gI~l------~~~CgG~g~CgTC~V~ 86 (117)
.+.+.+.+.|++. ...|| .|.|+.|.|.
T Consensus 195 ~v~~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~ 228 (752)
T PRK12778 195 FVCLLTKKYGIPTIVSLNTIMVDG-TGMCGACRVT 228 (752)
T ss_pred HHHHHHHHcCCCEEEeCcccccCc-ccccCcceeE
Confidence 4567777889875 24585 8999999995
No 95
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=41.51 E-value=60 Score=19.76 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=20.5
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+|++.+.+|+...+++....|+-+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~l 26 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERI 26 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHH
Confidence 5777778899888999998888664
No 96
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=40.82 E-value=80 Score=21.42 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.7
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHH
Q 041173 39 VTFSDKDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 39 Vt~~~~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
|.|-..||..+++.+.+.+|..+++..
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~ 31 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQL 31 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHH
Confidence 444447899999999999999998653
No 97
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=39.72 E-value=84 Score=19.76 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=23.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
.....++|.|.-++|.+.+-.....+||-+.
T Consensus 2 ~~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l 32 (82)
T PF00789_consen 2 EESDVVRIQVRLPDGSRLQRRFPKSDTLQDL 32 (82)
T ss_dssp STSSEEEEEEEETTSTEEEEEEETTSBHHHH
T ss_pred CCCCEEEEEEECCCCCEEEEEECCcchHHHH
Confidence 3556677888889999888888888877544
No 98
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=38.74 E-value=69 Score=19.90 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=24.0
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
+|++...+|+...+++...+|+-+. +...|++.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~ 38 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE 38 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 5667777899889999999988774 33346543
No 99
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=38.16 E-value=55 Score=19.77 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=18.9
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCC
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIE 69 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~ 69 (117)
+|+ .+++++|.||.+++...++.
T Consensus 6 Ng~--~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 6 NQQ--TLSLPDGATVADALAAYGAR 28 (65)
T ss_pred CCE--EEECCCCCcHHHHHHhhCCC
Confidence 455 78888999999999988874
No 100
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=37.46 E-value=84 Score=20.00 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
++|++....|+..++++....|+-+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~L 27 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGL 27 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHH
Confidence 46888878899889999999888764
No 101
>PTZ00044 ubiquitin; Provisional
Probab=37.27 E-value=76 Score=19.56 Aligned_cols=32 Identities=6% Similarity=0.226 Sum_probs=24.1
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
+|.+...+|....+++...+|+.+. ....|++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~ 37 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID 37 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 4667778899999999999998774 3345554
No 102
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=37.14 E-value=74 Score=19.65 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=21.3
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
+|++ .|+ ..+..++.||.+.+...+++.
T Consensus 2 ~i~v---NG~--~~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 2 IVVV---NEE--QVEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred EEEE---CCE--EEEcCCCCcHHHHHHHcCCCC
Confidence 4554 466 566678999999999988864
No 103
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=36.79 E-value=1.2e+02 Score=19.70 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHH----HCCCCc
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVH----ENDIEL 70 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~----~~gI~l 70 (117)
....++|.+.+.+|....+.+...++|..... +.||+.
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~ 49 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM 49 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc
Confidence 45567888888999998999999887766533 346543
No 104
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=35.96 E-value=91 Score=20.60 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCEEEEEe--cCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKV--PVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~--~~G~tLLea 62 (117)
++|+|..++++..++++ ....|+.+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~l 29 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGEL 29 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHH
Confidence 57888888898855555 788999886
No 105
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=35.83 E-value=26 Score=26.54 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=18.3
Q ss_pred hHHHHHHHCC--CCc----c--CCCCCcccccCCEEEE
Q 041173 58 SMLEAVHEND--IEL----E--GACEGSLACSTCHVIK 87 (117)
Q Consensus 58 tLLeaa~~~g--I~l----~--~~CgG~g~CgTC~V~V 87 (117)
.+.+.+.+.| +.+ + ..|| .|.|+.|.+..
T Consensus 192 ~~~~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~ 228 (243)
T cd06192 192 AVVEALDEWLQLIKASVSNNSPMCCG-IGICGACTIET 228 (243)
T ss_pred HHHHHHHhhcCCceEEEECCccccCc-cccccceEEEe
Confidence 5555566654 322 1 2466 79999999984
No 106
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=35.75 E-value=38 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
.|..++..++.|.||++.-+++++++
T Consensus 156 ~g~wqsy~V~~G~TLaQlFRdn~Lpi 181 (242)
T COG3061 156 SGNWQSYTVPQGKTLAQLFRDNNLPI 181 (242)
T ss_pred cccceeEEecCCccHHHHHhccCCCh
Confidence 35678999999999999999999986
No 107
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=35.16 E-value=40 Score=17.21 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=17.2
Q ss_pred EEEecCCchHHHHHHHCCCCc
Q 041173 50 NIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 50 ~v~~~~G~tLLeaa~~~gI~l 70 (117)
...+..|+|+-..+.+.++.+
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~ 22 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISV 22 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCH
Confidence 456788999999999988864
No 108
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=33.97 E-value=39 Score=18.55 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=13.1
Q ss_pred EecCCchHHHHHHHCCCCc
Q 041173 52 KVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 52 ~~~~G~tLLeaa~~~gI~l 70 (117)
.++.|+|+-..|.+.|+.+
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 4688999999999999865
No 109
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=33.71 E-value=12 Score=26.69 Aligned_cols=28 Identities=32% Similarity=0.641 Sum_probs=23.0
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHCCC
Q 041173 41 FSDKDGEEKNIKVPVGMSMLEAVHENDI 68 (117)
Q Consensus 41 ~~~~~G~~~~v~~~~G~tLLeaa~~~gI 68 (117)
+.-..|..+++.+++|++++|+..+..|
T Consensus 85 lLL~~GAdrt~~~PdG~~~~eate~edI 112 (117)
T KOG4214|consen 85 LLLQNGADRTIHAPDGTALIEATEEEDI 112 (117)
T ss_pred HHHHcCcccceeCCCchhHHhhccHHHH
Confidence 3336788899999999999999887665
No 110
>PRK05802 hypothetical protein; Provisional
Probab=33.60 E-value=35 Score=27.70 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=19.3
Q ss_pred HHHHHHH--CCCCc----c--CCCCCcccccCCEEEE
Q 041173 59 MLEAVHE--NDIEL----E--GACEGSLACSTCHVIK 87 (117)
Q Consensus 59 LLeaa~~--~gI~l----~--~~CgG~g~CgTC~V~V 87 (117)
+.+.+.+ .+|.+ + ..|| .|.|+.|.|..
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~ 304 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRY 304 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEE
Confidence 5555555 67754 2 3465 89999999984
No 111
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=33.26 E-value=1e+02 Score=19.15 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=22.6
Q ss_pred EEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 40 TFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 40 t~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
.+....|+..++++....|+.+. +...|++
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~ 35 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ 35 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC
Confidence 45567899889999999999883 4455664
No 112
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=33.05 E-value=26 Score=18.82 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=15.4
Q ss_pred ecCCchHHHHHHHCCCCcc
Q 041173 53 VPVGMSMLEAVHENDIELE 71 (117)
Q Consensus 53 ~~~G~tLLeaa~~~gI~l~ 71 (117)
+..|+||-..|.+.|+.+.
T Consensus 1 v~~gdtl~~IA~~~~~~~~ 19 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDFD 19 (44)
T ss_pred CCCCCCHHHHHHHHCcCHH
Confidence 3578999999999988754
No 113
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=32.51 E-value=92 Score=19.95 Aligned_cols=21 Identities=5% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEecCCchHHHHHHHCCCCc
Q 041173 50 NIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 50 ~v~~~~G~tLLeaa~~~gI~l 70 (117)
.+++.++.||.+.+...|++.
T Consensus 11 ~~e~~~~~tv~dLL~~l~~~~ 31 (68)
T COG2104 11 EVEIAEGTTVADLLAQLGLNP 31 (68)
T ss_pred EEEcCCCCcHHHHHHHhCCCC
Confidence 899999999999999999864
No 114
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=31.85 E-value=48 Score=21.94 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=13.5
Q ss_pred EEEEecCCchHHHHHHHCCCCc
Q 041173 49 KNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~gI~l 70 (117)
+++.++.|+||-.+..++|++.
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--H
T ss_pred cEEEECCCCcHHHHHHHcCCCH
Confidence 4788999999999999999964
No 115
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=31.07 E-value=1.1e+02 Score=19.46 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+.|++....|+...+++....|+-+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~l 28 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSEL 28 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHH
Confidence 46888888899888888888888764
No 116
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=30.96 E-value=1.2e+02 Score=20.19 Aligned_cols=31 Identities=10% Similarity=0.339 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE 69 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~ 69 (117)
..|++|++ .|+ ..++.++.||.+.+...+++
T Consensus 16 ~~~m~I~V---NG~--~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 16 MVLITISI---NDQ--SIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CceEEEEE---CCe--EEEcCCCCcHHHHHHHcCCC
Confidence 34667776 576 67778899999998887764
No 117
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=30.16 E-value=61 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCcc
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIELE 71 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~l~ 71 (117)
+|+ .++.+.|.||.+|+.+.|....
T Consensus 7 nGe--ev~lp~gsTlrdalea~ga~y~ 31 (512)
T COG4070 7 NGE--EVTLPAGSTLRDALEASGASYI 31 (512)
T ss_pred CCe--EecCCCcchHHHHHHhcCCccc
Confidence 576 8999999999999999999754
No 118
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=27.72 E-value=28 Score=24.41 Aligned_cols=13 Identities=54% Similarity=1.132 Sum_probs=10.3
Q ss_pred CCcccccCCEEEE
Q 041173 75 EGSLACSTCHVIK 87 (117)
Q Consensus 75 gG~g~CgTC~V~V 87 (117)
.|...||||+|..
T Consensus 65 egClECGTCRvlc 77 (99)
T COG2440 65 EGCLECGTCRVLC 77 (99)
T ss_pred cCeeeccceeEec
Confidence 4556899999984
No 119
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.41 E-value=1.5e+02 Score=20.74 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHCCCC
Q 041173 49 KNIKVPVGMSMLEAVHENDIE 69 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~gI~ 69 (117)
.++++.+|.|+-+|++..||.
T Consensus 19 ~~v~v~egatV~dAi~~Sgll 39 (99)
T COG2914 19 CRVQLQEGATVEDAILASGLL 39 (99)
T ss_pred EEEEeccCcCHHHHHHhcchh
Confidence 578999999999999999995
No 120
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=27.32 E-value=38 Score=19.59 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=10.8
Q ss_pred CCCCcccccCCEEEE
Q 041173 73 ACEGSLACSTCHVIK 87 (117)
Q Consensus 73 ~CgG~g~CgTC~V~V 87 (117)
.|| -|.|+.|.+..
T Consensus 5 ~CG-~G~C~~C~v~~ 18 (40)
T PF10418_consen 5 ACG-VGACGGCVVPV 18 (40)
T ss_dssp SSS-SSSS-TTEEEC
T ss_pred cCC-CcEeCCcEeee
Confidence 586 78999999984
No 121
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=27.19 E-value=57 Score=30.81 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=20.5
Q ss_pred hHHHHHHHCCCC----cc--CCCCCcccccCCEEEE
Q 041173 58 SMLEAVHENDIE----LE--GACEGSLACSTCHVIK 87 (117)
Q Consensus 58 tLLeaa~~~gI~----l~--~~CgG~g~CgTC~V~V 87 (117)
.+.++++..||+ +. ..|| -|.|+.|.|.+
T Consensus 195 av~~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~ 229 (1006)
T PRK12775 195 ACVETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHHCCCcEEECChhheeCc-cceeCCCEeee
Confidence 345666778884 32 3575 89999999975
No 122
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=26.97 E-value=1.4e+02 Score=18.32 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=18.8
Q ss_pred CCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 45 DGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 45 ~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
.|+ .++++.+.||.+.+...++..
T Consensus 6 Ng~--~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 6 NDQ--PMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred CCe--EEEcCCCCCHHHHHHHcCCCC
Confidence 465 677788999999998877754
No 123
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=26.36 E-value=1.2e+02 Score=18.25 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
++|++... |...++++...+|+-+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~l 25 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDL 25 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHH
Confidence 35677654 77788999999888764
No 124
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=26.31 E-value=1.1e+02 Score=19.46 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=18.1
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+|++. -.|+.+.+++...+|+.+.
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHH
Confidence 45555 4688889999999988654
No 125
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=25.58 E-value=55 Score=26.44 Aligned_cols=31 Identities=23% Similarity=0.605 Sum_probs=24.2
Q ss_pred CchHHHHHHH--CCCC----ccCCCCCcccccCCEEEE
Q 041173 56 GMSMLEAVHE--NDIE----LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 56 G~tLLeaa~~--~gI~----l~~~CgG~g~CgTC~V~V 87 (117)
|--+|+|+.. +.++ +--+|+ .|.||+|.+.|
T Consensus 76 GpMvLDALiKIKnE~DptLTFRRSCR-EGICGSCAMNI 112 (288)
T KOG3049|consen 76 GPMVLDALIKIKNEMDPTLTFRRSCR-EGICGSCAMNI 112 (288)
T ss_pred chHHHHHHHHhhcccCCceehhhhhh-ccccccceecc
Confidence 8899999986 3443 235799 68999999988
No 126
>smart00257 LysM Lysin motif.
Probab=24.10 E-value=84 Score=15.61 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=15.6
Q ss_pred EEecCCchHHHHHHHCCCCc
Q 041173 51 IKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 51 v~~~~G~tLLeaa~~~gI~l 70 (117)
+.+..|+|+-..+.+.++..
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~ 21 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISV 21 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCH
Confidence 45678899999988887753
No 127
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=23.78 E-value=1.3e+02 Score=18.25 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHH----HCCCCc
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVH----ENDIEL 70 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~----~~gI~l 70 (117)
++|++...+|+...+.+...+++-.... +.|++.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~ 38 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPP 38 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCc
Confidence 4677777888888899998876544433 346654
No 128
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=23.63 E-value=2e+02 Score=18.14 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
...+|.|.-|+|.+.+......+||-++
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v 30 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTV 30 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 3456777779999888888888887654
No 129
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=23.45 E-value=1.3e+02 Score=18.73 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=26.3
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHC
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHEN 66 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~ 66 (117)
...+++.+.|.+|. .|.+...+.|.+|...+
T Consensus 39 ~~~~~l~Y~D~dgD--~V~i~sd~Dl~~a~~~~ 69 (84)
T PF00564_consen 39 DEDFQLKYKDEDGD--LVTISSDEDLQEAIEQA 69 (84)
T ss_dssp TSSEEEEEEETTSS--EEEESSHHHHHHHHHHH
T ss_pred CccEEEEeeCCCCC--EEEeCCHHHHHHHHHHH
Confidence 56789999999997 88899999998887654
No 130
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.35 E-value=1.2e+02 Score=25.55 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
++|+|.+..|+...|++...+|+.++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dL 26 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKEL 26 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHH
Confidence 36888888999999999999998876
No 131
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=22.82 E-value=1.2e+02 Score=19.04 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=12.2
Q ss_pred EEEEEcCCCCEEEEEecCCc
Q 041173 38 NVTFSDKDGEEKNIKVPVGM 57 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~ 57 (117)
+|.+.|+.|+.+++...+|.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~ 30 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGG 30 (54)
T ss_dssp EEEEEETT--EEEEE--TT-
T ss_pred EEEEccCCCCeeeEEECCCC
Confidence 57778899998888887764
No 132
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=22.13 E-value=45 Score=33.85 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=39.4
Q ss_pred EEEEecCCchHHHHHHHCCCCc-cCCC---CCcccccCCEEEE-EeeCCC--CCeEEecC
Q 041173 49 KNIKVPVGMSMLEAVHENDIEL-EGAC---EGSLACSTCHVIK-ITWPEL--DGVRLAFP 101 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~gI~l-~~~C---gG~g~CgTC~V~V-~l~~~~--dGlvv~lP 101 (117)
.......|+-+|.-.++++++. ...| |-.-.|++|..++ +++++| +-++|+|.
T Consensus 1035 ~~an~~tGel~lsr~ldnNl~asm~v~VsDG~hsvta~C~lrvviit~e~Lt~S~TlrLe 1094 (2531)
T KOG4289|consen 1035 LLANAKTGELLLSRELDNNLEASMKVCVSDGAHSVTAQCRLRVVIITDEMLTNSITLRLE 1094 (2531)
T ss_pred EEecccCCcEEehhhhhcccceeEEEEeecCccceeeeEEEEEEEechHHhccceEeEhh
Confidence 3556677999998888888763 3334 4456899999998 788888 66777773
No 133
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=21.77 E-value=2e+02 Score=17.58 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
++|++....|. .++++....|+.+.
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~l 25 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDF 25 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHH
Confidence 35777777886 58999999988774
No 134
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=21.66 E-value=2.1e+02 Score=18.58 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=21.6
Q ss_pred EEEEcCCCCEEEEEecCCc-----hHHHHHHHCCC
Q 041173 39 VTFSDKDGEEKNIKVPVGM-----SMLEAVHENDI 68 (117)
Q Consensus 39 Vt~~~~~G~~~~v~~~~G~-----tLLeaa~~~gI 68 (117)
+.|..++|.+.+|.+-.++ +|.+.+.++++
T Consensus 31 ~q~kHp~~~~vtVP~Hp~~dl~~Gtl~~Ilkqa~l 65 (66)
T COG1724 31 RQYKHPDGGRVTVPFHPGEDLPPGTLRSILKQAGL 65 (66)
T ss_pred eEEEcCCCCEEEecCCCccccCcHHHHHHHHHhcC
Confidence 4567777777777777766 67777777775
No 135
>PRK00969 hypothetical protein; Provisional
Probab=20.84 E-value=1.4e+02 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEG 72 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~ 72 (117)
|++|.+ +|+ .+++++|.||-+|+.++|.+...
T Consensus 1 ~m~V~v---ng~--~~~v~~g~Tl~Dal~~s~~~y~~ 32 (508)
T PRK00969 1 MMSVKV---NGE--EVTVPEGSTLKDALKASGAPYIE 32 (508)
T ss_pred CeEEEE---CCE--EeecCCCCcHHHHHhhcCCCcCC
Confidence 456665 566 78999999999999999987543
No 136
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=20.54 E-value=1.1e+02 Score=20.03 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
.|.+++.+|+ .+-+-.-.--|+.|.+.|++|
T Consensus 14 ~VrlI~~~g~--~lGv~~~~eAl~~A~~~~lDL 44 (76)
T PF05198_consen 14 EVRLIDEDGE--QLGVMSLREALRLAKEKGLDL 44 (76)
T ss_dssp EEEEE-TTS---EEEEEEHHHHHHHHHHTT-EE
T ss_pred EEEEECCCCc--EeceEEHHHHHHHHHHcCCcE
Confidence 6788888887 444445556677788889985
No 137
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=20.37 E-value=2.9e+02 Score=18.73 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
..++|+|....|+...+++...+|+-+. +...|++.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~ 65 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPV 65 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh
Confidence 3468888888999999999999998873 44556654
No 138
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=20.30 E-value=2.3e+02 Score=17.64 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
.+|.|.-++|++.+......+||-+.
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l 28 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDV 28 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHH
Confidence 45666669999888888888876544
Done!