Query 041173
Match_columns 117
No_of_seqs 154 out of 1005
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hui_A Ferredoxin; cytochrome 99.8 7.1E-21 2.4E-25 135.5 9.2 77 29-105 14-126 (126)
2 2y5c_A Adrenodoxin-like protei 99.8 1.8E-19 6.2E-24 123.8 9.0 55 33-87 2-56 (109)
3 2bt6_A Adrenodoxin 1; rutheniu 99.8 1.2E-19 4.1E-24 124.3 8.0 56 32-87 2-59 (108)
4 3n9z_C Adrenodoxin; cytochrome 99.8 9E-21 3.1E-25 134.4 0.7 76 33-108 2-114 (123)
5 3lxf_A Ferredoxin; iron, iron- 99.8 9.1E-19 3.1E-23 120.1 8.2 51 37-87 1-52 (104)
6 3ah7_A [2Fe-2S]ferredoxin; [2F 99.7 1.2E-17 4.1E-22 115.1 7.9 76 36-111 1-111 (113)
7 2wlb_A ETP1-FD, electron trans 99.7 1E-16 3.5E-21 108.7 9.0 53 35-87 2-54 (103)
8 1uwm_A Ferredoxin VI, FDVI; el 99.7 7.3E-17 2.5E-21 109.9 8.2 51 37-87 1-52 (106)
9 1xlq_A Putidaredoxin, PDX; [2F 99.7 9.5E-17 3.3E-21 109.3 8.5 50 38-87 2-52 (106)
10 1b9r_A Protein (terpredoxin); 99.7 7.6E-17 2.6E-21 109.6 5.4 51 37-87 1-52 (105)
11 1i7h_A Ferredoxin; 2Fe-2S,elec 99.6 1.2E-15 4.1E-20 104.9 7.3 52 36-87 1-55 (111)
12 1l5p_A Ferredoxin; [2Fe-2S] cl 99.6 8.1E-15 2.8E-19 98.0 6.7 49 38-87 2-51 (93)
13 1frr_A Ferredoxin I; electron 99.5 2.8E-14 9.7E-19 94.8 7.4 50 36-87 1-50 (95)
14 1jq4_A Methane monooxygenase c 99.5 2.8E-14 9.6E-19 95.8 6.0 52 35-87 3-54 (98)
15 1awd_A Ferredoxin; electron tr 99.5 8E-14 2.7E-18 93.0 6.8 49 37-87 1-49 (94)
16 1czp_A Ferredoxin I; [2Fe-2S] 99.5 1.4E-13 4.7E-18 92.5 8.0 50 37-87 3-53 (98)
17 1a70_A Ferredoxin; iron-sulfur 99.5 1.4E-13 4.7E-18 92.5 7.2 49 37-87 3-51 (97)
18 1frd_A Heterocyst [2Fe-2S] fer 99.4 2.8E-13 9.6E-18 90.7 7.7 50 37-87 3-53 (98)
19 1iue_A Ferredoxin; electron tr 99.4 3.6E-13 1.2E-17 90.6 6.3 49 37-87 3-51 (98)
20 1wri_A Ferredoxin II, ferredox 99.4 4.5E-13 1.5E-17 89.3 6.4 49 36-87 1-49 (93)
21 1krh_A Benzoate 1,2-dioxygenas 99.3 6.7E-12 2.3E-16 98.5 7.7 52 35-87 2-53 (338)
22 3zyy_X Iron-sulfur cluster bin 99.3 4.5E-12 1.6E-16 109.9 6.8 50 35-87 2-51 (631)
23 1doi_A 2Fe-2S ferredoxin; halo 99.1 1.5E-11 5E-16 87.3 2.5 53 32-87 23-75 (128)
24 2pia_A Phthalate dioxygenase r 99.0 3.8E-10 1.3E-14 88.6 6.7 50 34-87 235-284 (321)
25 3i9v_3 NADH-quinone oxidoreduc 98.5 1.6E-07 5.5E-12 82.2 7.2 47 36-87 1-52 (783)
26 1t3q_A Quinoline 2-oxidoreduct 98.5 3.3E-07 1.1E-11 67.3 6.9 61 38-100 11-82 (168)
27 3c8y_A Iron hydrogenase 1; dit 98.4 7.2E-07 2.5E-11 75.9 7.4 62 36-102 1-76 (574)
28 1n62_A Carbon monoxide dehydro 98.0 1.8E-05 6.3E-10 58.3 7.0 61 38-100 5-76 (166)
29 1rm6_C 4-hydroxybenzoyl-COA re 98.0 1.7E-05 5.9E-10 57.9 6.7 47 39-87 5-53 (161)
30 3hrd_D Nicotinate dehydrogenas 98.0 2E-05 6.7E-10 57.9 6.9 63 38-102 5-78 (160)
31 1ffv_A CUTS, iron-sulfur prote 98.0 2E-05 6.8E-10 57.9 6.9 61 38-100 5-76 (163)
32 1kf6_B Fumarate reductase iron 97.9 1.4E-05 4.7E-10 60.5 5.8 39 48-87 25-69 (243)
33 2bs2_B Quinol-fumarate reducta 97.4 0.00019 6.4E-09 54.2 5.0 39 48-87 25-69 (241)
34 2h88_B Succinate dehydrogenase 97.3 0.00031 1E-08 53.7 5.1 55 32-87 7-77 (252)
35 2wdq_B Succinate dehydrogenase 97.2 0.00031 1.1E-08 52.8 3.9 39 48-87 22-67 (238)
36 1y56_A Hypothetical protein PH 97.0 0.00071 2.4E-08 55.5 5.2 60 35-99 14-86 (493)
37 3vr8_B Iron-sulfur subunit of 96.9 0.0011 3.7E-08 52.4 5.0 39 48-87 56-101 (282)
38 1vlb_A Aldehyde oxidoreductase 96.8 0.0025 8.5E-08 57.1 7.4 50 36-87 1-52 (907)
39 1dgj_A Aldehyde oxidoreductase 96.6 0.0027 9.2E-08 56.8 6.1 50 36-87 1-52 (907)
40 2w3s_A Xanthine dehydrogenase; 96.4 0.0043 1.5E-07 51.7 5.3 47 39-87 3-51 (462)
41 3nvw_A Xanthine dehydrogenase/ 96.3 0.0048 1.7E-07 45.4 4.9 49 35-87 3-54 (164)
42 2l05_A Serine/threonine-protei 95.0 0.034 1.2E-06 37.7 4.7 42 22-65 4-46 (95)
43 2gag_A Heterotetrameric sarcos 93.2 0.11 3.9E-06 46.2 5.4 50 35-88 19-79 (965)
44 1wxm_A A-RAF proto-oncogene se 90.1 0.26 9E-06 32.7 3.3 33 31-65 4-36 (86)
45 3plu_A Ubiquitin-like modifier 89.5 0.5 1.7E-05 31.6 4.3 40 31-70 16-59 (93)
46 3unc_A Xanthine dehydrogenase/ 88.6 0.45 1.5E-05 44.4 4.8 47 39-87 6-55 (1332)
47 1rrb_A RAF-1 RBD, RAF proto-on 88.3 0.33 1.1E-05 33.4 2.9 34 30-65 14-47 (107)
48 1uh6_A Ubiquitin-like 5; beta- 88.1 1.3 4.3E-05 29.8 5.6 39 33-71 25-67 (100)
49 3u7z_A Putative metal binding 87.9 0.84 2.9E-05 30.8 4.7 33 34-67 6-40 (101)
50 3ny5_A Serine/threonine-protei 87.2 0.67 2.3E-05 31.3 3.8 43 33-87 12-58 (96)
51 2gow_A HCG-1 protein, ubiquiti 85.3 1.8 6.3E-05 29.8 5.4 31 32-62 13-43 (125)
52 3kdv_A DDRB, DNA damage respon 84.2 1.1 3.6E-05 33.2 3.9 36 33-68 4-39 (184)
53 2al3_A TUG long isoform; TUG U 83.0 0.89 3E-05 30.3 2.8 32 38-69 11-46 (90)
54 1c1y_B Proto-onkogene serine/t 81.6 1.5 5.3E-05 28.4 3.5 27 37-65 4-30 (77)
55 1yqb_A Ubiquilin 3; structural 81.3 2.4 8.2E-05 27.6 4.5 33 29-62 15-47 (100)
56 4hcn_B Polyubiquitin, ubiquiti 80.9 1.9 6.6E-05 27.6 3.9 42 29-70 15-60 (98)
57 1wwt_A Threonyl-tRNA synthetas 80.5 3.2 0.00011 26.0 4.8 37 32-72 7-44 (88)
58 3v6c_B Ubiquitin; structural g 80.4 4.1 0.00014 25.5 5.3 40 31-70 12-55 (91)
59 2kan_A Uncharacterized protein 79.9 5.2 0.00018 25.6 5.8 36 33-69 12-51 (94)
60 3zyv_A AOH1; oxidoreductase, m 73.8 5.2 0.00018 37.2 5.9 47 39-87 10-59 (1335)
61 3dbh_I NEDD8; cell cycle, acti 73.5 9.6 0.00033 23.1 5.5 39 32-70 8-50 (88)
62 1v2y_A 3300001G02RIK protein; 73.1 7.3 0.00025 26.0 5.1 30 33-62 4-33 (105)
63 2l7r_A Ubiquitin-like protein 72.2 4.2 0.00014 25.8 3.6 29 32-62 15-43 (93)
64 4a20_A Ubiquitin-like protein 72.0 4.9 0.00017 26.4 4.0 34 29-62 12-47 (98)
65 3u30_A Ubiquitin, linear DI-ub 71.7 4.5 0.00015 28.3 4.0 42 29-70 13-58 (172)
66 2kdb_A Homocysteine-responsive 68.8 6.5 0.00022 25.7 4.0 34 29-62 16-51 (99)
67 2dzi_A Ubiquitin-like protein 67.1 13 0.00046 22.0 5.0 37 33-69 4-44 (81)
68 1tyg_B YJBS; alpha beta barrel 66.6 3.7 0.00013 26.6 2.4 35 30-69 14-49 (87)
69 3hvz_A Uncharacterized protein 64.7 9.5 0.00033 24.1 4.1 35 38-74 7-41 (78)
70 4dwf_A HLA-B-associated transc 64.2 12 0.00041 23.0 4.5 29 34-62 3-31 (90)
71 2kmm_A Guanosine-3',5'-BIS(dip 62.7 9.5 0.00033 22.6 3.7 28 41-70 5-32 (73)
72 2kjr_A CG11242; UBL, ubiquitin 60.7 23 0.00078 22.8 5.5 31 32-62 11-43 (95)
73 3mtn_B UBA80, ubcep1, ubiquiti 60.1 17 0.00056 21.7 4.5 35 36-70 3-41 (85)
74 1wh3_A 59 kDa 2'-5'-oligoadeny 59.0 17 0.00058 22.0 4.5 37 33-69 4-44 (87)
75 2lxa_A Ubiquitin-like protein 58.9 5.8 0.0002 25.4 2.3 27 36-62 1-29 (87)
76 3phx_B Ubiquitin-like protein 58.4 20 0.00067 21.3 4.6 36 35-70 3-42 (79)
77 1wx8_A Riken cDNA 4931431F19; 58.2 29 0.00098 21.5 5.6 36 33-69 14-53 (96)
78 3kwl_A Uncharacterized protein 58.2 20 0.00069 29.8 6.0 32 48-87 44-75 (514)
79 2l32_A Small archaeal modifier 57.9 21 0.00072 22.0 4.8 25 47-71 11-35 (74)
80 1wgh_A Ubiquitin-like 3, HCG-1 55.4 22 0.00074 24.0 4.8 30 33-62 13-42 (116)
81 3m62_B UV excision repair prot 55.0 9.5 0.00033 24.8 2.9 27 36-62 1-27 (106)
82 1wy8_A NP95-like ring finger p 54.8 28 0.00096 21.1 5.0 37 33-69 4-46 (89)
83 2hj8_A Interferon-induced 17 k 54.7 20 0.00068 22.1 4.3 36 35-70 3-42 (88)
84 4eew_A Large proline-rich prot 53.8 21 0.00072 21.7 4.3 38 33-70 14-55 (88)
85 2kk8_A Uncharacterized protein 53.8 25 0.00085 21.7 4.7 26 37-62 11-36 (84)
86 1wyw_B Ubiquitin-like protein 53.6 18 0.0006 23.0 4.0 39 32-70 17-59 (97)
87 2wyq_A HHR23A, UV excision rep 53.2 23 0.00079 21.2 4.3 28 35-62 4-31 (85)
88 1wgr_A Growth factor receptor- 53.1 37 0.0013 22.6 5.6 31 36-66 9-39 (100)
89 1wx7_A Ubiquilin 3; ubiquitin- 50.4 37 0.0013 21.6 5.2 31 31-62 12-42 (106)
90 1wia_A Hypothetical ubiquitin- 49.8 28 0.00097 21.6 4.5 31 34-64 5-35 (95)
91 2klc_A Ubiquilin-1; ubiquitin- 49.2 29 0.001 22.1 4.6 36 33-69 22-61 (101)
92 3n3k_B Ubiquitin; hydrolase, p 47.0 17 0.0006 21.7 3.0 35 36-70 3-41 (85)
93 2uyz_B Small ubiquitin-related 46.2 27 0.00093 20.7 3.8 35 36-70 3-41 (79)
94 1wgd_A Homocysteine-responsive 45.0 30 0.001 21.4 4.0 30 33-62 4-35 (93)
95 1e0g_A Membrane-bound lytic mu 44.8 14 0.00047 19.9 2.1 22 50-71 4-25 (48)
96 1ndd_A NEDD8, protein (ubiquit 44.4 33 0.0011 19.7 3.9 32 38-69 2-37 (76)
97 1ep3_B Dihydroorotate dehydrog 44.2 12 0.00041 27.4 2.3 28 58-87 205-238 (262)
98 2dzk_A UBX domain-containing p 43.9 65 0.0022 21.0 5.8 33 30-62 7-39 (109)
99 2ojr_A Ubiquitin; lanthide-bin 43.8 57 0.002 21.0 5.4 30 33-62 32-61 (111)
100 1j8c_A Ubiquitin-like protein 42.9 72 0.0025 21.2 6.8 29 33-62 29-57 (125)
101 1v86_A DNA segment, CHR 7, way 42.7 55 0.0019 20.5 5.1 39 30-69 11-53 (95)
102 1se9_A Ubiquitin family; ubiqu 41.9 51 0.0018 22.6 5.1 31 32-62 12-43 (126)
103 2kdi_A Ubiquitin, vacuolar pro 41.6 44 0.0015 21.8 4.6 34 36-69 9-46 (114)
104 1ttn_A DC-UBP, dendritic cell- 41.4 38 0.0013 21.6 4.2 31 32-62 19-49 (106)
105 3a9j_A Ubiquitin; protein comp 40.4 38 0.0013 19.4 3.7 25 38-62 2-26 (76)
106 1wgg_A Ubiquitin carboxyl-term 40.4 34 0.0012 21.7 3.8 38 32-70 3-45 (96)
107 1tke_A Threonyl-tRNA synthetas 40.4 22 0.00074 25.9 3.1 27 36-66 1-27 (224)
108 1wxv_A BAG-family molecular ch 39.0 66 0.0023 19.7 5.0 36 33-69 4-48 (92)
109 4fbj_B NEDD8; effector-HOST ta 38.6 40 0.0014 20.7 3.8 33 38-70 2-38 (88)
110 2hj1_A Hypothetical protein; s 38.4 17 0.00058 23.9 2.0 36 34-69 10-48 (97)
111 3k9o_B Ubiquitin, UBB+1; E2-25 36.8 44 0.0015 20.5 3.8 34 37-70 2-39 (96)
112 3vdz_A Ubiquitin-40S ribosomal 36.4 50 0.0017 21.3 4.2 36 35-70 34-73 (111)
113 2eke_C Ubiquitin-like protein 35.5 77 0.0026 20.9 5.0 35 35-70 30-68 (106)
114 2jxx_A Nfatc2-interacting prot 34.5 85 0.0029 20.4 5.1 38 32-69 21-63 (97)
115 2kd0_A LRR repeats and ubiquit 34.0 55 0.0019 20.0 3.9 19 44-62 19-37 (85)
116 1v5o_A 1700011N24RIK protein; 33.7 90 0.0031 19.7 5.0 36 35-70 6-49 (102)
117 1uel_A HHR23B, UV excision rep 32.7 55 0.0019 20.3 3.8 25 38-62 2-26 (95)
118 1sif_A Ubiquitin; hydrophobic 30.6 62 0.0021 19.8 3.7 34 37-70 10-47 (88)
119 2bwf_A Ubiquitin-like protein 29.5 68 0.0023 18.5 3.6 32 37-69 5-40 (77)
120 2io1_B Small ubiquitin-related 29.5 82 0.0028 20.0 4.3 38 33-70 4-45 (94)
121 2dzj_A Synaptic glycoprotein S 29.1 54 0.0018 20.5 3.3 36 34-69 8-51 (88)
122 2djp_A Hypothetical protein SB 29.1 24 0.00081 21.2 1.5 24 49-72 16-39 (77)
123 1yx5_B Ubiquitin; proteasome, 29.1 67 0.0023 19.9 3.7 32 38-69 2-37 (98)
124 3rt3_B Ubiquitin-like protein 28.9 60 0.0021 21.8 3.7 34 37-70 3-40 (159)
125 1tif_A IF3-N, translation init 27.9 48 0.0016 21.1 2.8 31 38-70 15-45 (78)
126 2kkc_A Sequestosome-1; P62, PB 27.4 1.2E+02 0.0042 20.0 4.9 36 30-67 56-91 (102)
127 1v5t_A 8430435I17RIK protein; 26.5 44 0.0015 20.7 2.5 37 33-70 4-45 (90)
128 3qij_A Protein 4.1; cytoskelet 26.2 70 0.0024 24.2 4.0 41 26-68 9-53 (296)
129 2io0_B Small ubiquitin-related 24.9 1.1E+02 0.0038 19.3 4.3 36 35-70 4-43 (91)
130 4a1k_A Putative L, D-transpept 24.0 53 0.0018 23.0 2.7 21 50-70 4-24 (165)
131 2k5p_A THis protein, thiamine- 23.9 57 0.0019 20.2 2.6 27 38-69 2-30 (78)
132 2faz_A Ubiquitin-like containi 23.6 1.1E+02 0.0038 17.7 3.9 34 37-70 3-42 (78)
133 2ktr_A Sequestosome-1; autopha 23.1 1.6E+02 0.0054 20.0 4.9 36 30-67 71-106 (117)
134 3rt3_B Ubiquitin-like protein 22.4 1.3E+02 0.0044 20.1 4.4 36 35-70 80-119 (159)
135 3b08_A Polyubiquitin-C, ubiqui 22.4 98 0.0034 20.1 3.7 32 38-69 2-37 (152)
136 3j21_T 50S ribosomal protein L 22.0 1.6E+02 0.0055 18.8 4.6 26 43-68 59-85 (86)
137 1ryj_A Unknown; beta/alpha pro 21.5 1.4E+02 0.0046 17.7 4.5 32 37-69 5-36 (70)
138 1wju_A NEDD8 ultimate buster-1 20.7 1.4E+02 0.0048 19.5 4.2 39 33-71 12-58 (100)
139 3qx1_A FAS-associated factor 1 20.4 1.6E+02 0.0053 17.9 4.6 30 33-62 4-33 (84)
No 1
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.84 E-value=7.1e-21 Score=135.54 Aligned_cols=77 Identities=34% Similarity=0.596 Sum_probs=68.8
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE--------------------
Q 041173 29 GCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK-------------------- 87 (117)
Q Consensus 29 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V-------------------- 87 (117)
-.+.+.+|++|+|++++|++++|++.+|+|||++|+++||+ +++.|+|.|.||||+|+|
T Consensus 14 ~~~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~ 93 (126)
T 3hui_A 14 LVPRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLD 93 (126)
T ss_dssp -CCTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHT
T ss_pred ccCCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcC
Confidence 45678999999999999988999999999999999999999 999999999999999999
Q ss_pred ---------------EeeCCCCCeEEecCCCcc
Q 041173 88 ---------------ITWPELDGVRLAFPAATR 105 (117)
Q Consensus 88 ---------------~l~~~~dGlvv~lP~~~~ 105 (117)
.++.++||++|+||+++|
T Consensus 94 ~~~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~r 126 (126)
T 3hui_A 94 FGYDVRPNSRLSCQIKVSNELDGLIVTTPERQR 126 (126)
T ss_dssp TSSSCCTTEEEGGGCBCCGGGTTEEEECCSCCC
T ss_pred chhhccCCeEEeeeCEECcCCCcEEEEecCcCC
Confidence 455667889999988764
No 2
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=123.76 Aligned_cols=55 Identities=45% Similarity=0.802 Sum_probs=51.7
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
+++|++|+|++++|..++|++++|+|||++|+++||++++.|+|.|.|+||+|+|
T Consensus 2 ~~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v 56 (109)
T 2y5c_A 2 ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYV 56 (109)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEE
Confidence 3579999999899998899999999999999999999999999989999999998
No 3
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.80 E-value=1.2e-19 Score=124.32 Aligned_cols=56 Identities=45% Similarity=0.849 Sum_probs=51.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCcc--CCCCCcccccCCEEEE
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELE--GACEGSLACSTCHVIK 87 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~--~~CgG~g~CgTC~V~V 87 (117)
++.+|++|+|++++|..++|++++|+|||+||+++||+|+ +.|+|.|.|+||||+|
T Consensus 2 ~~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v 59 (108)
T 2bt6_A 2 SSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIF 59 (108)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEEC
T ss_pred CCCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEE
Confidence 4678999999988999999999999999999999999999 9999999999999998
No 4
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.79 E-value=9e-21 Score=134.41 Aligned_cols=76 Identities=39% Similarity=0.714 Sum_probs=13.8
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCcc--CCCCCcccccCCEEEE-----------------------
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELE--GACEGSLACSTCHVIK----------------------- 87 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~--~~CgG~g~CgTC~V~V----------------------- 87 (117)
.++|++|+|++++|..++|++.+|+|||++|+++||+++ +.|+|.|.|+||||+|
T Consensus 2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~ 81 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAY 81 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccc
Confidence 468999999999999899999999999999999999999 9999999999999988
Q ss_pred ------------EeeCCCCCeEEecCCCcccee
Q 041173 88 ------------ITWPELDGVRLAFPAATRDFA 108 (117)
Q Consensus 88 ------------~l~~~~dGlvv~lP~~~~~~~ 108 (117)
.+++++|||+|+||++.+++.
T Consensus 82 ~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~~~~~ 114 (123)
T 3n9z_C 82 GLTDRSRLGCQICLTKSMDNMTVRVPETVADAR 114 (123)
T ss_dssp ------CBCC-----------------------
T ss_pred cccCCeEEeeEeEEccCCCCEEEEECccccccc
Confidence 567777899999999886543
No 5
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.77 E-value=9.1e-19 Score=120.09 Aligned_cols=51 Identities=31% Similarity=0.726 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
.+|+|++++|..++|++.+|+|||++|+++||+ +++.|+|.|.||||||+|
T Consensus 1 ~~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v 52 (104)
T 3lxf_A 1 TAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLV 52 (104)
T ss_dssp CEEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEE
Confidence 379999999999999999999999999999999 999999999999999999
No 6
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.72 E-value=1.2e-17 Score=115.13 Aligned_cols=76 Identities=32% Similarity=0.539 Sum_probs=63.7
Q ss_pred ceEEEEEcCCC---CEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEEE----------------eeCC----
Q 041173 36 MVNVTFSDKDG---EEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIKI----------------TWPE---- 92 (117)
Q Consensus 36 mv~Vt~~~~~G---~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V~----------------l~~~---- 92 (117)
|++|+|++++| ..++|++++|+|||+||+++||+|++.|+|.|.|+||+|+|. +++.
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE 80 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence 78999998776 567999999999999999999999999999899999999981 2211
Q ss_pred -----------C-CCeEEecCCCccceeecC
Q 041173 93 -----------L-DGVRLAFPAATRDFAVDG 111 (117)
Q Consensus 93 -----------~-dGlvv~lP~~~~~~~~~~ 111 (117)
. ++++|.+|++..++..+|
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~~~~~~~~ 111 (113)
T 3ah7_A 81 AQSRLGCQVFVADEDLTIEIPKYSLNHAAEA 111 (113)
T ss_dssp TTEEEGGGCBCCSSCEEEECCSCCCCCCC--
T ss_pred CCcEEeeeCEEeCCCEEEEECchhhhhhhcc
Confidence 2 589999999888888877
No 7
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.69 E-value=1e-16 Score=108.68 Aligned_cols=53 Identities=51% Similarity=0.829 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++++|+|.+++|..++|++.+|+|||++|+++||++++.|+|.|.|++|+|+|
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v 54 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIV 54 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEE
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEE
Confidence 46789998889988899999999999999999999999999989999999999
No 8
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.69 E-value=7.3e-17 Score=109.90 Aligned_cols=51 Identities=27% Similarity=0.733 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
++|+|++++|..++|++++|+|||++|+++||+ +++.|+|.|.||||+|+|
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v 52 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYV 52 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEE
Confidence 478997789988899999999999999999999 999999899999999998
No 9
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.69 E-value=9.5e-17 Score=109.32 Aligned_cols=50 Identities=36% Similarity=0.750 Sum_probs=47.6
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
+|+|+.++|..++|++++|+|||+||+++||+ +++.|+|.|.||||+|+|
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v 52 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYV 52 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEE
Confidence 78997789988899999999999999999999 999999999999999998
No 10
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.66 E-value=7.6e-17 Score=109.64 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=47.7
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
++|+|++++|.+++|++++|+|||++|+++||+ +++.|+|.|.||||+|+|
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v 52 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEI 52 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEE
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEE
Confidence 378987789987899999999999999999999 999999999999999998
No 11
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.61 E-value=1.2e-15 Score=104.89 Aligned_cols=52 Identities=35% Similarity=0.611 Sum_probs=46.7
Q ss_pred ceEEEEEcCCC---CEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDG---EEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G---~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
|++|+|+..+| ..++|++.+|+|||++|+++||++++.|+|.|.|++|+|+|
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v 55 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIV 55 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEE
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEE
Confidence 67899987655 55799999999999999999999999998889999999999
No 12
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.55 E-value=8.1e-15 Score=98.00 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=44.9
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
+|+|. .+|+.++|++.+|+|||++|+++|++ +++.|+|.|.|++|+|+|
T Consensus 2 ~v~i~-~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v 51 (93)
T 1l5p_A 2 TITAV-KGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKH 51 (93)
T ss_dssp EEEEE-ETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEE
T ss_pred eEEEE-eCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEE
Confidence 46644 68888899999999999999999999 999999999999999998
No 13
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.52 E-value=2.8e-14 Score=94.84 Aligned_cols=50 Identities=28% Similarity=0.493 Sum_probs=45.4
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
+++|+|..++| .+++++++|+|||++|+++||++++.|+ .|.||+|+|+|
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v 50 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDLPFSCR-AGACSSCLGKV 50 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCCCCSSS-SSSSSTTEEEE
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCCCCCCC-CcCCCCCEEEE
Confidence 46788876777 5799999999999999999999999998 78999999998
No 14
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.50 E-value=2.8e-14 Score=95.79 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
.|++|+|.++++..++|++++|+|||++|+++||++++.| |.|.||+|+|+|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C-~~G~Cg~C~v~v 54 (98)
T 1jq4_A 3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSC-REGGCATCKALC 54 (98)
T ss_dssp CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSC-CSSCCCCCCBCE
T ss_pred CcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCC-CCCCCCCCEEEE
Confidence 4789999877888889999999999999999999999999 589999999998
No 15
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.48 E-value=8e-14 Score=93.04 Aligned_cols=49 Identities=31% Similarity=0.541 Sum_probs=44.1
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+|+.++| .+++++.+|+|||++|+++||++++.|+ .|.||+|+|+|
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v 49 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEEAGLDLPYSCR-AGACSSCAGKV 49 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEE
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCCCcCCC-CCcCCCCEEEE
Confidence 3678875666 5799999999999999999999999998 79999999998
No 16
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.47 E-value=1.4e-13 Score=92.54 Aligned_cols=50 Identities=30% Similarity=0.461 Sum_probs=45.4
Q ss_pred eEEEEEcCCCC-EEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGE-EKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~-~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+|+.+++. .+++++++|+|||++|+++||.+++.|+ .|.||+|+|+|
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v 53 (98)
T 1czp_A 3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCR-AGACSTCAGKL 53 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEE
T ss_pred eEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCC-CCCCCCCeEEE
Confidence 68899866664 5799999999999999999999999998 89999999998
No 17
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.46 E-value=1.4e-13 Score=92.51 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=44.3
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+|..++| .+++++.+|+|||++|+++||++++.|+ .|.||+|+|+|
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v 51 (97)
T 1a70_A 3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDLPYSCR-AGSCSSCAGKL 51 (97)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSS-SSCSSTTEEEE
T ss_pred EEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCeEEE
Confidence 5788875666 5799999999999999999999999998 89999999998
No 18
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.44 E-value=2.8e-13 Score=90.72 Aligned_cols=50 Identities=28% Similarity=0.450 Sum_probs=44.4
Q ss_pred eEEEEEcCCC-CEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDG-EEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G-~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+|..+++ +.++|++++|+|||++|+++||++++.|+ .|.||+|+|+|
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v 53 (98)
T 1frd_A 3 YQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCH-SGSCSSCVGKV 53 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEE
T ss_pred eEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCC-CCCCCCCEEEE
Confidence 6788885554 25799999999999999999999999998 78999999998
No 19
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.41 E-value=3.6e-13 Score=90.56 Aligned_cols=49 Identities=33% Similarity=0.557 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
++|+|..++| .+++++++|+|||++|+++|+++++.|+ .|.||+|+|+|
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~-~G~Cg~C~v~v 51 (98)
T 1iue_A 3 YNITLRTNDG-EKKIECNEDEYILDASERQNVELPYSCR-GGSCSTCAAKL 51 (98)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCCCCSSC-SSSSSTTEEEE
T ss_pred EEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCCCCCCC-CCcCCCCEEEE
Confidence 5788875555 5799999999999999999999999998 79999999998
No 20
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.40 E-value=4.5e-13 Score=89.33 Aligned_cols=49 Identities=29% Similarity=0.459 Sum_probs=44.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
|++|+|..++| .+++++.+|+|||++|+++| ++++.|+ .|.||+|+|+|
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i~~~C~-~G~Cg~C~v~v 49 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DLPLSCQ-AGACSTCLGKI 49 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CCCCSSS-SSSSSTTEEEE
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CCCCCCC-CCCCCCCEEEE
Confidence 46888876666 57999999999999999999 9999998 78999999998
No 21
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.28 E-value=6.7e-12 Score=98.54 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
.|++|+|.+++|..+++++++|+|||++|+++||++++.|+ .|.||||+|+|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~-~g~Cg~C~v~v 53 (338)
T 1krh_A 2 SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCR-EGECGTCRAFC 53 (338)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCS-SSSSCTTEEEE
T ss_pred CceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCC-CcCCCCCEEEE
Confidence 37899998888888899999999999999999999999998 78999999998
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.27 E-value=4.5e-12 Score=109.91 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
.|++|+|. ++|+ ++++++|+|||++|+++||++++.|+|.|.||||+|+|
T Consensus 2 ~m~~V~~~-~sg~--~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V 51 (631)
T 3zyy_X 2 AEYKVLFK-PDQK--EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRV 51 (631)
T ss_dssp -CEEEEEE-TTTE--EEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEE
T ss_pred CceEEEEe-cCCe--EEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEE
Confidence 48899998 6665 89999999999999999999999999999999999998
No 23
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.13 E-value=1.5e-11 Score=87.31 Aligned_cols=53 Identities=19% Similarity=0.392 Sum_probs=45.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
...+|.+|++. .+|. .++++++|+|||++|+++|+++++.|+ .|.||+|+|+|
T Consensus 23 ~f~~m~~i~i~-~~g~-~~v~v~~g~tlL~aa~~~Gi~i~~~C~-~G~CgtC~v~v 75 (128)
T 1doi_A 23 VFGEASDMDLD-DEDY-GSLEVNEGEYILEAAEAQGYDWPFSCR-AGACANCAAIV 75 (128)
T ss_dssp HHHHHHHSCCC-TTTE-EEEECCTTSCHHHHHHHTTCCCCCSSS-SSSSSTTEEEE
T ss_pred ccccccEEEEE-eCCc-EEEEECCCCcHHHHHHHcCCCCccCCC-ccCCCCCEeEE
Confidence 34457778874 5663 489999999999999999999999994 78999999998
No 24
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.03 E-value=3.8e-10 Score=88.56 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
+..++|+|. +.|. ++++++|+|||++|+++||++++.|+ .|.||+|+++|
T Consensus 235 ~~~~~v~~~-~~~~--~~~~~~~~~ll~a~~~~g~~~~~~C~-~G~Cg~C~~~v 284 (321)
T 2pia_A 235 NTPFTVRLS-RSGT--SFEIPANRSILEVLRDANVRVPSSCE-SGTCGSCKTAL 284 (321)
T ss_dssp CCCEEEEET-TTCC--EEEECTTSCHHHHHHHTTCCCCCSCS-SSSSCTTEEEE
T ss_pred CccEEEEEe-CCCe--EEEECCCCcHHHHHHHcCCCCCCCCC-CCCCCCCEEEE
Confidence 456888885 5565 89999999999999999999999995 79999999998
No 25
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.52 E-value=1.6e-07 Score=82.25 Aligned_cols=47 Identities=30% Similarity=0.485 Sum_probs=42.0
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCC-----CCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGAC-----EGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~C-----gG~g~CgTC~V~V 87 (117)
|++|+| ||+ ++++++|+|||+||+++||+||+.| ++.|.|+.|.|.|
T Consensus 1 mv~i~i---dg~--~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v 52 (783)
T 3i9v_3 1 MVRVKV---NDR--IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRI 52 (783)
T ss_dssp CEEEEC---SSC--EEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEE
T ss_pred CeEEEE---CCE--EEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEe
Confidence 667765 677 8999999999999999999999999 5678999999998
No 26
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.47 E-value=3.3e-07 Score=67.26 Aligned_cols=61 Identities=16% Similarity=0.351 Sum_probs=47.7
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE-------EeeCC--CCCeEEec
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK-------ITWPE--LDGVRLAF 100 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V-------~l~~~--~dGlvv~l 100 (117)
.|+|. -+|+.+++++.+|+|||++++++ |+. ....|+ .|.||+|.|.| ++++. .+|+.|..
T Consensus 11 ~i~~~-ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~-~G~CGaC~V~vdG~~v~sC~~~~~~~~G~~v~T 82 (168)
T 1t3q_A 11 RISAT-INGKPRVFYVEPRMHLADALREVVGLTGTKIGCE-QGVCGSCTILIDGAPMRSCLTLAVQAEGCSIET 82 (168)
T ss_dssp EEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEETTEEEEGGGSBGGGGTTCEEEC
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCCccccCCC-CCCCCCcEEEECCCEeechhhHHHHhCCCeEEE
Confidence 45544 47888889999999999999996 997 889997 68999999999 33333 35776654
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.37 E-value=7.2e-07 Score=75.89 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCCC-----C-cccccCCEEEE--------EeeCCCCCeEEecC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGACE-----G-SLACSTCHVIK--------ITWPELDGVRLAFP 101 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~Cg-----G-~g~CgTC~V~V--------~l~~~~dGlvv~lP 101 (117)
|+++++ +|. .+++++|+|||+||+++|+.+++.|. + .|.|+.|.|.| +.++..+||+|..-
T Consensus 1 mv~~~i---ng~--~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~T~ 75 (574)
T 3c8y_A 1 MKTIII---NGV--QFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIINTN 75 (574)
T ss_dssp CEEEEE---TTE--EEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEESS
T ss_pred CeEEEE---CCE--EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEEec
Confidence 455554 665 78899999999999999999999887 6 78999999998 45566688888754
Q ss_pred C
Q 041173 102 A 102 (117)
Q Consensus 102 ~ 102 (117)
+
T Consensus 76 ~ 76 (574)
T 3c8y_A 76 S 76 (574)
T ss_dssp C
T ss_pred c
Confidence 3
No 28
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=97.98 E-value=1.8e-05 Score=58.26 Aligned_cols=61 Identities=15% Similarity=0.324 Sum_probs=45.7
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE-------EeeCC--CCCeEEec
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK-------ITWPE--LDGVRLAF 100 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V-------~l~~~--~dGlvv~l 100 (117)
+|+|. .+|+.+++++.+++|||+++++. |+. ....|+ .|.||.|-|.| ++++. .+|..|..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~-~G~CGaCtV~vdG~~v~SC~~~~~~~~G~~V~T 76 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCD-TSHCGACTVDLDGMSVKSCTMFAVQANGASITT 76 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEETTEEEEGGGSBGGGGTTCEEEC
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCC-CCCCCCCEEEECCcEEechhhhHHHhCCceEEE
Confidence 35554 47998899999999999999984 663 567897 68999999999 33333 47775543
No 29
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=97.97 E-value=1.7e-05 Score=57.90 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=39.8
Q ss_pred EEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCcccccCCEEEE
Q 041173 39 VTFSDKDGEEKNIKVPVGMSMLEAVHEN-DI-ELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 39 Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI-~l~~~CgG~g~CgTC~V~V 87 (117)
|+|. .+|+.+++++.+++|||+++++. |+ .....|+ .|.||.|-|.|
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~-~G~CGaCtV~v 53 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCD-GGECGACTVLV 53 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSS-SSSSCTTEEEE
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCC-CCCCCCCEEEE
Confidence 4444 48998899999999999999996 76 3677898 68999999999
No 30
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.96 E-value=2e-05 Score=57.94 Aligned_cols=63 Identities=17% Similarity=0.391 Sum_probs=47.5
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE---------EeeCCCCCeEEecCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK---------ITWPELDGVRLAFPA 102 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V---------~l~~~~dGlvv~lP~ 102 (117)
.|+|. -+|+.+++++.++++||+++++. |+. ....|+ .|.||.|.|.| ..-...+|..|..-+
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~-~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiE 78 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCS-EGECGACTVIFNGDPVTTCCMLAGQADESTIITLE 78 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSS-SSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGG
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHHHhcCCCccccccC-CCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeC
Confidence 45554 47988899999999999999985 773 677897 78999999999 223334777665433
No 31
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=97.96 E-value=2e-05 Score=57.94 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=45.4
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE-------EeeC--CCCCeEEec
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK-------ITWP--ELDGVRLAF 100 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V-------~l~~--~~dGlvv~l 100 (117)
.|+|. .+|+.+++++++++|||+++++. |+. ....|+ .|.||.|-|.| ++++ ..+|..|..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~-~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~T 76 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCE-TSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLT 76 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCS-SSCSCTTEEEETTEEEEGGGSBGGGGTTCEEEC
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCC-CCCCCCCEEEECCcEecchHhhHHHhCCceEEE
Confidence 34444 47998899999999999999984 663 567898 58999999999 3333 337775543
No 32
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=97.93 E-value=1.4e-05 Score=60.45 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=33.1
Q ss_pred EEEEEecCCchHHHHHHHCCC------CccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHENDI------ELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~gI------~l~~~CgG~g~CgTC~V~V 87 (117)
.+++++.+|+|||+||+++|+ .....| +.|.|++|.|.|
T Consensus 25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c-~~G~Cg~C~v~v 69 (243)
T 1kf6_B 25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSC-RMAICGSCGMMV 69 (243)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCC-SSSSSCCCEEEE
T ss_pred EEEEecCCCChHHHHHHHcCcccCCCcccccCC-CCCcCCCCEeEE
Confidence 367889999999999999983 345689 478999999998
No 33
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=97.39 E-value=0.00019 Score=54.18 Aligned_cols=39 Identities=15% Similarity=0.400 Sum_probs=32.1
Q ss_pred EEEEEecCCchHHHHHHHCC------CCccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHEND------IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~g------I~l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.+|+|||++|+..+ +.....|+ .|.||+|.|.|
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~i 69 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICGSCGMMI 69 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSCTTEEEE
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCCCCEeEE
Confidence 35788889999999999764 34556897 78999999999
No 34
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.29 E-value=0.00031 Score=53.66 Aligned_cols=55 Identities=15% Similarity=0.330 Sum_probs=39.2
Q ss_pred CCCCceEEEEEc--CC--C-----CEEEEEecC-CchHHHHHHHCCC------CccCCCCCcccccCCEEEE
Q 041173 32 IQKDMVNVTFSD--KD--G-----EEKNIKVPV-GMSMLEAVHENDI------ELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 32 ~~~~mv~Vt~~~--~~--G-----~~~~v~~~~-G~tLLeaa~~~gI------~l~~~CgG~g~CgTC~V~V 87 (117)
.+..++++.|.- ++ + +.++|++.+ |+|||++|+..++ .....|+ .|.||+|.|.|
T Consensus 7 ~~~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~-~g~Cg~C~v~i 77 (252)
T 2h88_B 7 ATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCR-EGICGSCAMNI 77 (252)
T ss_dssp -CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCS-SSSSCTTEEEE
T ss_pred CCCceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCC-CCCCCCCEEEE
Confidence 345666766663 32 2 235677777 9999999999862 2445896 78999999999
No 35
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=97.16 E-value=0.00031 Score=52.80 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=33.1
Q ss_pred EEEEEecC--CchHHHHHHHCC-----CCccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPV--GMSMLEAVHEND-----IELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~--G~tLLeaa~~~g-----I~l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.+ |+|||++|+..+ +.....|+ .|.||.|-|.|
T Consensus 22 ~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v 67 (238)
T 2wdq_B 22 DYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCGSDGLNM 67 (238)
T ss_dssp EEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSCTTEEEE
T ss_pred EEEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCCCCEEEE
Confidence 35788888 999999999987 44567897 68999999999
No 36
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.00071 Score=55.50 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=42.4
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCC---C--CcccccCCEEEE--------EeeCCCCCeEEe
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGAC---E--GSLACSTCHVIK--------ITWPELDGVRLA 99 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~C---g--G~g~CgTC~V~V--------~l~~~~dGlvv~ 99 (117)
++++++| ||+ .+++.+|+||++|++++|+++...| . |...|+.|.|.| +.++..+||++.
T Consensus 14 ~~v~~~~---dg~--~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v~g~~~~~ac~~~v~~Gm~v~ 86 (493)
T 1y56_A 14 KKVTIYF---EGK--ELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTVNGVKGLEARRIKVKDGMKIE 86 (493)
T ss_dssp CEEEEEE---TTE--EEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBSSSCTTEEGGGCBCCTTCEEB
T ss_pred CeEEEEE---CCE--EEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEECCEecccceeEEcccCcEEe
Confidence 3455554 776 7999999999999999999752211 1 122267899988 555666898885
No 37
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=96.90 E-value=0.0011 Score=52.38 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=31.2
Q ss_pred EEEEEecC-CchHHHHHHHCCCC------ccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPV-GMSMLEAVHENDIE------LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~-G~tLLeaa~~~gI~------l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.+ |+|||++++..+.. ....|+ .|.||.|-|.|
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CGsC~V~I 101 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICGSCAMNI 101 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCCCCEEEE
Confidence 46778887 99999999986642 235798 48999999999
No 38
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=96.84 E-value=0.0025 Score=57.06 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DI-ELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI-~l~~~CgG~g~CgTC~V~V 87 (117)
|.+|+|. .+|+.+++++.++++||+++++. |+ .....|+ .|.||.|-|.|
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~g~CGaCtv~v 52 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCE-QGQCGACSVIL 52 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCC-CCCcCccEEEE
Confidence 3456666 58999999999999999999984 66 4677898 58999999999
No 39
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.63 E-value=0.0027 Score=56.84 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHC-CC-CccCCCCCcccccCCEEEE
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHEN-DI-ELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~-gI-~l~~~CgG~g~CgTC~V~V 87 (117)
|.+|+|. .+|+.+++++.++++||+++++. |+ ..-..|+ .|.||.|-|.|
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~-~G~CGaCtv~v 52 (907)
T 1dgj_A 1 METKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCG-KGQCGACTVIL 52 (907)
T ss_dssp CEEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSS-SSSSCTTEEEE
T ss_pred CceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCC-CCCcCceEEEE
Confidence 3456665 57888899999999999999984 66 3567898 58999999999
No 40
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=96.35 E-value=0.0043 Score=51.74 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=38.5
Q ss_pred EEEEcCCCCEEEE-EecCCchHHHHHHHCCCC-ccCCCCCcccccCCEEEE
Q 041173 39 VTFSDKDGEEKNI-KVPVGMSMLEAVHENDIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 39 Vt~~~~~G~~~~v-~~~~G~tLLeaa~~~gI~-l~~~CgG~g~CgTC~V~V 87 (117)
|+|. -+|+.+++ ++.++++||++++..|+. ....|+ .|.||.|-|.|
T Consensus 3 ~~~~-vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~-~G~CGaCtV~v 51 (462)
T 2w3s_A 3 IAFL-LNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCN-EGDCGACTVMI 51 (462)
T ss_dssp EEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCS-SSSSCTTEEEE
T ss_pred EEEE-ECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCC-CCCcCCcEEEE
Confidence 4444 47998888 788999999999966774 667898 58999999998
No 41
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=96.34 E-value=0.0048 Score=45.37 Aligned_cols=49 Identities=14% Similarity=0.335 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCEE-EEEecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE
Q 041173 35 DMVNVTFSDKDGEEK-NIKVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~-~v~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V 87 (117)
+++++++ +|+.+ .+++.++++||+.+++. |+- .-.-|+ .|.||.|-|.|
T Consensus 3 ~~i~~~v---NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~-~G~CGACTVlv 54 (164)
T 3nvw_A 3 DELVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVML 54 (164)
T ss_dssp CCEEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEE
T ss_pred ceEEEEE---CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcC-CCCCCCCEEEE
Confidence 3455554 67764 56788999999999985 763 667897 68999999998
No 42
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=95.05 E-value=0.034 Score=37.67 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCC-ceEEEEEcCCCCEEEEEecCCchHHHHHHH
Q 041173 22 AENDASHGCSIQKD-MVNVTFSDKDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 22 ~~~~~~~~~~~~~~-mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
++++++|-|+.... .+.+.+ |++.+..|++++|+||.+|+..
T Consensus 4 ~~~~~~~~~~~~~~~~irvhL--PNqQrT~V~VrpG~tlrdAL~K 46 (95)
T 2l05_A 4 HHHHHSHMPKSPQKPIVRVFL--PNKQRTVVPARCGVTVRDSLKK 46 (95)
T ss_dssp ------CCCCCCCSCEEEEEE--TTTEEEEEECCTTCBHHHHHHH
T ss_pred cccccccCCCCCCccEEEEEC--CCCCeEEEEecCCcCHHHHHHH
Confidence 44555665555444 444444 8888889999999999998654
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=93.16 E-value=0.11 Score=46.22 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCC-----------CCCcccccCCEEEEE
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGA-----------CEGSLACSTCHVIKI 88 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~-----------CgG~g~CgTC~V~V~ 88 (117)
++-.|+|. -+|+ ++++.+|+||++|++.+|+.+... |.+ +.|..|.|.|.
T Consensus 19 ~~~~~~~~-~dG~--~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~-~~c~~~~v~v~ 79 (965)
T 2gag_A 19 REEALSLT-VDGA--KLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAG-VEEPNALVTVS 79 (965)
T ss_dssp EEEEEEEE-ETTE--EEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSS-TTCCSCEEEEC
T ss_pred CCCeEEEE-ECCE--EEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCC-ccCCceEEEEc
Confidence 33344444 3786 899999999999999999976443 543 57999999973
No 44
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=90.07 E-value=0.26 Score=32.69 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=26.2
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHH
Q 041173 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 31 ~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
++...++++.+ |++.+..|++.+|+||.+|+..
T Consensus 4 ~k~~~~irvhL--Pn~QrT~V~VrpG~tlrdaL~K 36 (86)
T 1wxm_A 4 GSSGGTVKVYL--PNKQRTVVTVRDGMSVYDSLDK 36 (86)
T ss_dssp CCCSSEEEEEC--SSSCEEEEECCSSCBSHHHHHH
T ss_pred ccccceEEEEC--CCCCeEEEEecCCcCHHHHHHH
Confidence 45666666666 8888889999999999988654
No 45
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=89.48 E-value=0.5 Score=31.56 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 31 ~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
.....|+.|.+.++.|+...+++.+.+|+.+. +.+.|++.
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~ 59 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP 59 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH
Confidence 35678999999999999999999999999864 34567754
No 46
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=88.63 E-value=0.45 Score=44.38 Aligned_cols=47 Identities=15% Similarity=0.352 Sum_probs=36.4
Q ss_pred EEEEcCCCCEEEE-EecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE
Q 041173 39 VTFSDKDGEEKNI-KVPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 39 Vt~~~~~G~~~~v-~~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V 87 (117)
|+|. -+|+.+++ ++.+.++||+.+++. |+- .-.-|+ .|.||.|-|.|
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~-~g~CGaCtV~~ 55 (1332)
T 3unc_A 6 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCG-EGGCGACTVML 55 (1332)
T ss_dssp EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCS-SSSSCTTEEEE
T ss_pred EEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcC-CCCCCCcEEEE
Confidence 4443 36887665 688999999999984 764 556797 68999999998
No 47
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=88.32 E-value=0.33 Score=33.41 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHH
Q 041173 30 CSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 30 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
|++...++.+.+ |.+.+..|++.+|+||.||+..
T Consensus 14 p~k~~~~ir~hL--PNqQrT~V~VrpG~tlrdaL~K 47 (107)
T 1rrb_A 14 SSKTSNTIRVFL--PNKQRTVVNVRNGMSLHDCLMK 47 (107)
T ss_dssp -----CEEEEEC--TTTCCEEEECCTTCBHHHHHHH
T ss_pred CccccceEEEEC--CCCCeEEEEecCCcCHHHHHHH
Confidence 444555666665 8888889999999999998654
No 48
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.05 E-value=1.3 Score=29.75 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCcc
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIELE 71 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l~ 71 (117)
...|++|++.++.|+..++++.+.+|+.+. +...|++..
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 456899999998899899999999998764 344677643
No 49
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=87.93 E-value=0.84 Score=30.84 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCceEEEEEcCCCCEE--EEEecCCchHHHHHHHCC
Q 041173 34 KDMVNVTFSDKDGEEK--NIKVPVGMSMLEAVHEND 67 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~--~v~~~~G~tLLeaa~~~g 67 (117)
.+.++|++++.+++.. .|. ..|++||+++.++.
T Consensus 6 ~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcC
Confidence 4668899998888764 456 68999999999988
No 50
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=87.19 E-value=0.67 Score=31.31 Aligned_cols=43 Identities=16% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHC----CCCccCCCCCcccccCCEEEE
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHEN----DIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~----gI~l~~~CgG~g~CgTC~V~V 87 (117)
+.+.+++.+ |++.+..|++.+|+||.+|+..+ |+ .+..|.|+.
T Consensus 12 ~~~~irvhL--PNqQrT~V~VrpG~tlrdaL~KaLk~R~L----------~pe~C~Vy~ 58 (96)
T 3ny5_A 12 QKPIVRVFL--PNKQRTVVPARCGVTVRDSLKKALMMRGL----------IPECCAVYR 58 (96)
T ss_dssp SSCEEEEEE--TTTEEEEEECCTTCBHHHHHHHHHHTTTC----------CGGGEEEEE
T ss_pred hhCEEEEEC--CCCceEEEEecCCcCHHHHHHHHHHHcCC----------ChHHeEEEE
Confidence 555666665 88888899999999999986543 33 456677775
No 51
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=85.32 E-value=1.8 Score=29.84 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
....++.|+|....|+..++++.+.+|+.++
T Consensus 13 ~~~~~m~I~vktl~G~~~~lev~~s~TV~~l 43 (125)
T 2gow_A 13 VPADMINLRLILVSGKTKEFLFSPNDSASDI 43 (125)
T ss_dssp CCTTCEEEEEECTTSCEEEEEECTTSBHHHH
T ss_pred CCCCeEEEEEEeCCCCEEEEEeCCccHHHHH
Confidence 3455699999988999999999999998654
No 52
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=84.23 E-value=1.1 Score=33.19 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCCC
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHENDI 68 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI 68 (117)
+-.|+.|.|+.+-|...+++++.++.||+.++..|-
T Consensus 4 ~~tml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG~ 39 (184)
T 3kdv_A 4 PFTMLHIEFITDLGAKVTVDVESADKLLDVQRQYGR 39 (184)
T ss_dssp CSCCEEEEEECTTCCEEEEEESSGGGHHHHHHHHHT
T ss_pred ccceEEEEEecCCCceEEEecCCHHHHHHHHHHhhh
Confidence 346999999999999999999999999999997654
No 53
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.99 E-value=0.89 Score=30.26 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=26.4
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHH----HCCCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVH----ENDIE 69 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~----~~gI~ 69 (117)
.|+++.++|.+.+|.+.++.+|.|++. ..|++
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 788888999999999999999887644 46774
No 54
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=81.61 E-value=1.5 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHE 65 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~ 65 (117)
+.+.+ |++.+..|++++|+||.+|+..
T Consensus 4 irvhL--Pn~QrT~V~VrpG~tlrdaL~K 30 (77)
T 1c1y_B 4 IRVFL--PNKQRTVVNVRNGMSLHDCLMK 30 (77)
T ss_dssp EEEEE--TTTEEEEEECCTTCBHHHHHHH
T ss_pred EEEEC--CCCceEEEEecCCcCHHHHHHH
Confidence 44444 8888889999999999998654
No 55
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=81.31 E-value=2.4 Score=27.55 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=27.4
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 29 GCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 29 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
.++..+.+++|++....|+ ..+++....|+.+.
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~L 47 (100)
T 1yqb_A 15 VPRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQL 47 (100)
T ss_dssp CCSCCTTEEEEEEECSSCE-EEEEEETTCBHHHH
T ss_pred CCCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHH
Confidence 6778889999999987775 68999999988664
No 56
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=80.93 E-value=1.9 Score=27.65 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 29 GCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 29 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
++...+..++|++...+|+...+++...+|+.+. ....|++.
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 60 (98)
T 4hcn_B 15 NLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP 60 (98)
T ss_dssp -------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 5556777889999888999999999999988764 23456654
No 57
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=80.50 E-value=3.2 Score=26.01 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=26.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEecC-CchHHHHHHHCCCCccC
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPV-GMSMLEAVHENDIELEG 72 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~-G~tLLeaa~~~gI~l~~ 72 (117)
.+..|++|++ ++|. ..+.+. |.|+++.|.+.+-.+..
T Consensus 7 ~~~~~i~I~l--pdG~--~~~~~~~~~T~~dia~~i~~~l~~ 44 (88)
T 1wwt_A 7 GDSKPIKVTL--PDGK--QVDAESWKTTPYQIACGISQGLAD 44 (88)
T ss_dssp CSCCEEEEEC--TTSC--EEEEETTTCCHHHHHHHSSTTTGG
T ss_pred CCCCCEEEEE--CCCC--EEEcccCCCCHHHHHHHhhhcccc
Confidence 4456777776 7888 566666 89999999887555443
No 58
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=80.37 E-value=4.1 Score=25.48 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=30.1
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 31 ~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
......++|++...+|+...+++...+|+.+. ....|++.
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP 55 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 34566788999888999999999999988764 33456654
No 59
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=79.92 E-value=5.2 Score=25.57 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=26.4
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
+...++|++....| ..++++...+|+.+. ....|++
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip 51 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP 51 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 56668888887766 788999999988764 2335664
No 60
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=73.80 E-value=5.2 Score=37.23 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=34.4
Q ss_pred EEEEcCCCCEEEEE-ecCCchHHHHHHHC-CCC-ccCCCCCcccccCCEEEE
Q 041173 39 VTFSDKDGEEKNIK-VPVGMSMLEAVHEN-DIE-LEGACEGSLACSTCHVIK 87 (117)
Q Consensus 39 Vt~~~~~G~~~~v~-~~~G~tLLeaa~~~-gI~-l~~~CgG~g~CgTC~V~V 87 (117)
|+|. -+|++.+++ +.+..|||+-++.+ ++- --.-|+ .|-||.|-|.|
T Consensus 10 l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~-EG~CGACtV~v 59 (1335)
T 3zyv_A 10 LIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCG-GGDCGACTVMI 59 (1335)
T ss_dssp EEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCS-SSSSCTTEEEE
T ss_pred EEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccC-CCCCcceEEEE
Confidence 4454 468765554 56799999999974 663 344688 56799999998
No 61
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=73.50 E-value=9.6 Score=23.13 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=29.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
..+..++|++...+|+...+++...+|+.+. ....|++.
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 4556788999988999999999999988764 23346653
No 62
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.12 E-value=7.3 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
....++|++...+|+..+|++....|+.+.
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHH
Confidence 445689999889999999999999998654
No 63
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=72.22 E-value=4.2 Score=25.83 Aligned_cols=29 Identities=7% Similarity=0.105 Sum_probs=19.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
....+++|++.. |+...+++....|+.+.
T Consensus 15 ~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~L 43 (93)
T 2l7r_A 15 VPRGSMQLFVRA--QELHTFEVTGQETVAQI 43 (93)
T ss_dssp -----CEEEEES--SSEEEEECCSSCBHHHH
T ss_pred CCCCcEEEEEEC--CCEEEEEeCCCCcHHHH
Confidence 455567888875 88888999999988664
No 64
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=72.03 E-value=4.9 Score=26.36 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCCCCCCceEEEEEcCCCCEEEE--EecCCchHHHH
Q 041173 29 GCSIQKDMVNVTFSDKDGEEKNI--KVPVGMSMLEA 62 (117)
Q Consensus 29 ~~~~~~~mv~Vt~~~~~G~~~~v--~~~~G~tLLea 62 (117)
+.+.....++|++....|+..++ ++...+|+.+.
T Consensus 12 ~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~l 47 (98)
T 4a20_A 12 DDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQI 47 (98)
T ss_dssp ------CCEEEEEEECSSSCEEEEEEECTTCBHHHH
T ss_pred cccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHH
Confidence 55667777899999888986666 55689988874
No 65
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=71.69 E-value=4.5 Score=28.29 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=29.1
Q ss_pred CCCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 29 GCSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 29 ~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
.|..+..+++|++....|+...+++...+|+.+. ....|++.
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 5566777889999888899889999999998873 44457754
No 66
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=68.79 E-value=6.5 Score=25.73 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=21.9
Q ss_pred CCCCCCCceEEEEEcCCCC--EEEEEecCCchHHHH
Q 041173 29 GCSIQKDMVNVTFSDKDGE--EKNIKVPVGMSMLEA 62 (117)
Q Consensus 29 ~~~~~~~mv~Vt~~~~~G~--~~~v~~~~G~tLLea 62 (117)
++......++|+|..+.|. ..++++...+|+.+.
T Consensus 16 ~~~~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~L 51 (99)
T 2kdb_A 16 NLYFQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKL 51 (99)
T ss_dssp -------CEEEEEECTTSSSCCEEEEECTTSBHHHH
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHH
Confidence 5555566789999888887 468888999988764
No 67
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.06 E-value=13 Score=22.01 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
.+.+++|++....|+...+++....|+.+. +...|++
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 445678888878898889999999988664 2345665
No 68
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=66.59 E-value=3.7 Score=26.62 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=21.6
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCC-chHHHHHHHCCCC
Q 041173 30 CSIQKDMVNVTFSDKDGEEKNIKVPVG-MSMLEAVHENDIE 69 (117)
Q Consensus 30 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G-~tLLeaa~~~gI~ 69 (117)
......+++|++ +|+ .++++++ .||.+.+...+++
T Consensus 14 ~~~~~~~M~I~v---NGe--~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 14 SGHIGGRHMLQL---NGK--DVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp --------CEEE---TTE--EECCSSSCCBHHHHHHHTTCT
T ss_pred CCCCCcceEEEE---CCE--EEECCCCCCcHHHHHHHhCCC
Confidence 334556667776 465 7778888 9999999998865
No 69
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=64.71 E-value=9.5 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=25.9
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCCccCCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIELEGAC 74 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l~~~C 74 (117)
.|.+..|+|. .++.+.|.|.+|+|.+-+-.+...|
T Consensus 7 ~i~v~tP~G~--~~~lp~GaT~~D~A~~Ih~~lg~~~ 41 (78)
T 3hvz_A 7 EVFVFTPKGD--VISLPIGSTVIDFAYAIHSAVGNRM 41 (78)
T ss_dssp EEEEECTTSC--EEEEETTCBHHHHHHHHCHHHHHTE
T ss_pred eEEEECCCCC--EEEecCCCCHHHHHHHhhhhhhcce
Confidence 3555669998 7889999999999987554453333
No 70
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=64.24 E-value=12 Score=23.01 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
..+++|++...+|+...+++...+|+.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~l 31 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEF 31 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHH
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHH
Confidence 35678888888899999999999988765
No 71
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=62.71 E-value=9.5 Score=22.58 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=20.8
Q ss_pred EEcCCCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 41 FSDKDGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 41 ~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
+.-++|+ ..+++.|.|+++.|.+.+..+
T Consensus 5 i~~p~g~--~~~~~~g~T~~dla~~i~~~l 32 (73)
T 2kmm_A 5 VFTPKGE--IKRLPQGATALDFAYSLHSDL 32 (73)
T ss_dssp EECTTCC--EEEECTTCBHHHHHHHHCSHH
T ss_pred EEcCCCC--EEEcCCCCcHHHHHHHHhhcc
Confidence 3336787 578889999999998765443
No 72
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=60.68 E-value=23 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCCCceEEEEEcCCCC--EEEEEecCCchHHHH
Q 041173 32 IQKDMVNVTFSDKDGE--EKNIKVPVGMSMLEA 62 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~--~~~v~~~~G~tLLea 62 (117)
.++..++|.+....+. ..++++...+|+.+.
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~L 43 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQL 43 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHH
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHH
Confidence 3678888888865553 578889999998764
No 73
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=60.12 E-value=17 Score=21.73 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
+++|++...+|+...+++...+|+.+. +...|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 41 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 578888888899899999999988764 23446653
No 74
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.02 E-value=17 Score=22.02 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=27.6
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
...+++|++...+|+..++++....|+.+. ....|++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 44 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP 44 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC
Confidence 345678888878888889999999998764 3345665
No 75
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=58.94 E-value=5.8 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCEEEEEec--CCchHHHH
Q 041173 36 MVNVTFSDKDGEEKNIKVP--VGMSMLEA 62 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~--~G~tLLea 62 (117)
|++|++....|+..++++. ..+|+.+.
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~l 29 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQI 29 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHH
Confidence 6789999889987777755 89998874
No 76
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=58.42 E-value=20 Score=21.34 Aligned_cols=36 Identities=6% Similarity=0.154 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
..++|++...+|+...+++...+|+.+. ....|++.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 42 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH
Confidence 3467888888999999999999988754 22456654
No 77
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.23 E-value=29 Score=21.55 Aligned_cols=36 Identities=3% Similarity=0.003 Sum_probs=27.0
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
...+++|++... |+..++++....|+.+. ....|++
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip 53 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN 53 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 456789998876 88889999999988764 3345665
No 78
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=58.18 E-value=20 Score=29.81 Aligned_cols=32 Identities=3% Similarity=0.004 Sum_probs=23.3
Q ss_pred EEEEEecCCchHHHHHHHCCCCccCCCCCcccccCCEEEE
Q 041173 48 EKNIKVPVGMSMLEAVHENDIELEGACEGSLACSTCHVIK 87 (117)
Q Consensus 48 ~~~v~~~~G~tLLeaa~~~gI~l~~~CgG~g~CgTC~V~V 87 (117)
.++|++.++.|||+++..-. .+ +|+. +|-+.|
T Consensus 44 ~y~v~~~~~~~vLd~L~~ik-~l--~fr~-----sCam~I 75 (514)
T 3kwl_A 44 SYFLEYQEDQYLLDLLKQLK-GV--SYSE-----NIALKI 75 (514)
T ss_dssp EEEEECCTTCBHHHHHTTST-TC--CCCS-----SCCEEE
T ss_pred EEEEeCCCCCcHHHHHHHhh-hC--eeec-----cceEEE
Confidence 34577788999999998755 33 3552 788888
No 79
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=57.92 E-value=21 Score=22.05 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.4
Q ss_pred CEEEEEecCCchHHHHHHHCCCCcc
Q 041173 47 EEKNIKVPVGMSMLEAVHENDIELE 71 (117)
Q Consensus 47 ~~~~v~~~~G~tLLeaa~~~gI~l~ 71 (117)
...++++++|.|+.+.+...||+..
T Consensus 11 ~~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 11 ETSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp SEEEEECSTTCSHHHHHHTTCCCSS
T ss_pred cceeEEcCCCCcHHHHHHHcCCCcc
Confidence 3457899999999999999999764
No 80
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.42 E-value=22 Score=24.01 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=25.0
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
....+.|+|....|..+++++...+|+.+.
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~l 42 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDI 42 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHH
Confidence 445688999888899999999999997654
No 81
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.02 E-value=9.5 Score=24.79 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
|++|++....|+...+++...+|+.+.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~L 27 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILET 27 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHH
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 677888878899889999999988864
No 82
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.78 E-value=28 Score=21.11 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=27.1
Q ss_pred CCCceEEEEEcCCC-CEEEE-EecCCchHHHH----HHHCCCC
Q 041173 33 QKDMVNVTFSDKDG-EEKNI-KVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G-~~~~v-~~~~G~tLLea----a~~~gI~ 69 (117)
.+.+++|++....| +...+ ++....|+.+. ....|++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip 46 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR 46 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC
Confidence 45678899887888 67889 59999988764 2345665
No 83
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=54.74 E-value=20 Score=22.14 Aligned_cols=36 Identities=6% Similarity=0.154 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
.+++|++....|+...+++....|+.+. ....|++.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~ 42 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 42 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCT
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh
Confidence 4578888878899889999999988764 23456653
No 84
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=53.82 E-value=21 Score=21.72 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=27.9
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
...+++|++...+|+...+++...+|+.+. ....|++.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 55 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS 55 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH
Confidence 345678888888899889999999988764 23346653
No 85
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=53.77 E-value=25 Score=21.75 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
++|++....|+..++++...+|+.+.
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~L 36 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVV 36 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCChHHHH
Confidence 57888888899999999999998764
No 86
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=53.59 E-value=18 Score=22.97 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=28.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
....+++|++...+|+...+++...+|+.+. +...||+.
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~ 59 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 59 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh
Confidence 4556789999989999899999998887653 22356653
No 87
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=53.17 E-value=23 Score=21.22 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
.+++|++....|+..++++....|+.+.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHH
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHH
Confidence 4678888878899889999999987664
No 88
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.12 E-value=37 Score=22.56 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHEN 66 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~ 66 (117)
...|+|-..||..++|.+.+++|..+++..-
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L 39 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEML 39 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHH
Confidence 3455555689999999999999999998753
No 89
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.42 E-value=37 Score=21.65 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 31 SIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 31 ~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
...+.+++|++....|+ ..+++....|+.+.
T Consensus 12 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~L 42 (106)
T 1wx7_A 12 VQDPHLIKVTVKTPKDK-EDFSVTDTCTIQQL 42 (106)
T ss_dssp CCCSSEEEEEEECSSCE-EEEEEETTCCHHHH
T ss_pred CCCCceEEEEEEeCCCc-EEEEECCCCcHHHH
Confidence 34578899999877775 68999999988764
No 90
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.84 E-value=28 Score=21.58 Aligned_cols=31 Identities=10% Similarity=-0.069 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCEEEEEecCCchHHHHHH
Q 041173 34 KDMVNVTFSDKDGEEKNIKVPVGMSMLEAVH 64 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~ 64 (117)
..+++|++....|+...+++...+|+.+.-.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~ 35 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKS 35 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHH
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 4568888877788888999999999887644
No 91
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=49.22 E-value=29 Score=22.13 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
...+++|++... |....+++....|+.+. ....|++
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 61 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH 61 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 446788988876 88888999999988764 2234665
No 92
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=47.00 E-value=17 Score=21.67 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
+++|++...+|+...+++...+|+.+. +...|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~ 41 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 467888878899889999999988765 23346654
No 93
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=46.15 E-value=27 Score=20.68 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
.++|++.+.+|+...+++...+|+.+. +...|++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~ 41 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM 41 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc
Confidence 467888888999889999998887654 23356653
No 94
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.00 E-value=30 Score=21.41 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCC--EEEEEecCCchHHHH
Q 041173 33 QKDMVNVTFSDKDGE--EKNIKVPVGMSMLEA 62 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~--~~~v~~~~G~tLLea 62 (117)
...+++|++....|. ..+|++...+|+.+.
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHH
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHH
Confidence 345678888877777 566777788887764
No 95
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=44.79 E-value=14 Score=19.91 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=19.0
Q ss_pred EEEecCCchHHHHHHHCCCCcc
Q 041173 50 NIKVPVGMSMLEAVHENDIELE 71 (117)
Q Consensus 50 ~v~~~~G~tLLeaa~~~gI~l~ 71 (117)
+..+..|+||-..|.+.|+.+.
T Consensus 4 ~y~V~~GDtl~~Ia~~~~~~~~ 25 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAKRHGVNIK 25 (48)
T ss_dssp EEEECTTCCHHHHHHHHTCCHH
T ss_pred EEEEcCCCcHHHHHHHHCcCHH
Confidence 5678899999999999999754
No 96
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=44.35 E-value=33 Score=19.71 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=23.5
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHH----HHCCCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAV----HENDIE 69 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa----~~~gI~ 69 (117)
+|++...+|+...+++....|+.+.- ...|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~ 37 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 57777778998899999999886642 234665
No 97
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=44.25 E-value=12 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=19.3
Q ss_pred hHHHHHHHCCCCcc------CCCCCcccccCCEEEE
Q 041173 58 SMLEAVHENDIELE------GACEGSLACSTCHVIK 87 (117)
Q Consensus 58 tLLeaa~~~gI~l~------~~CgG~g~CgTC~V~V 87 (117)
.+.+ +.+.|++.. ..|| .|.|+.|.|..
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG-~G~C~~C~~~~ 238 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACG-IGACYACVEHD 238 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSS-SSSSCTTEEEE
T ss_pred HHHH-HHhCCCCEEEEecccccCc-ccccccCCccc
Confidence 4555 566787631 3576 79999999984
No 98
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=43.93 E-value=65 Score=21.04 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 30 CSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 30 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+.......+|.|.-++|.+..-.....+||-++
T Consensus 7 ~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v 39 (109)
T 2dzk_A 7 GRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEA 39 (109)
T ss_dssp CCCCSCCEEEEEECSSSCEEEEEECTTSBHHHH
T ss_pred CCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 334556678888889999888888899888655
No 99
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=43.83 E-value=57 Score=20.96 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=24.5
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
...+++|++...+|+...+++....|+.+.
T Consensus 32 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 61 (111)
T 2ojr_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENV 61 (111)
T ss_dssp GSSCEEEEEECSSSCEEEEEECTTCBHHHH
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCCHHHH
Confidence 345788998888899889999999988764
No 100
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.89 E-value=72 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
.+.+++|++... |+..++++....|+.+.
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~L 57 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQF 57 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHH
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHH
Confidence 356789999877 88889999999988764
No 101
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.67 E-value=55 Score=20.52 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 30 CSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 30 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
+...+.+++|++. ..|+.+.+++....|+.+. ....||+
T Consensus 11 ~~~~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip 53 (95)
T 1v86_A 11 GGVGKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP 53 (95)
T ss_dssp CCCCCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC
T ss_pred CCCCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3445667888887 4677888999999998765 2235665
No 102
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=41.88 E-value=51 Score=22.61 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=24.5
Q ss_pred CCCCceEEEEEcCCCCEE-EEEecCCchHHHH
Q 041173 32 IQKDMVNVTFSDKDGEEK-NIKVPVGMSMLEA 62 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~-~v~~~~G~tLLea 62 (117)
.....+.|+|...+|... .+++.+.+|+.+.
T Consensus 12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~l 43 (126)
T 1se9_A 12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSAL 43 (126)
T ss_dssp SSCCCEEEEEEETTSCEEEEEEECTTCBHHHH
T ss_pred hhcccEEEEEEECCCCEEEeeecCccCHHHHH
Confidence 345678899988999876 6899999987654
No 103
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=41.56 E-value=44 Score=21.83 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
.++|.+....|+..++++....|+.+. ....|++
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 46 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 457888878999899999999988764 2234664
No 104
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.38 E-value=38 Score=21.65 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=23.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 32 IQKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
....+++|++....|+...+++....|+.+.
T Consensus 19 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~L 49 (106)
T 1ttn_A 19 NSGYECQLRLRLSTGKDLKLVVRSTDTVFHM 49 (106)
T ss_dssp --CCSEEEEEEETTTEEEEEEECTTSHHHHH
T ss_pred CCCCeEEEEEEcCCCCEEEEEeCCCCcHHHH
Confidence 3556688888877898888999999988664
No 105
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=40.45 E-value=38 Score=19.44 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=19.8
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+|++...+|+...+++....|+.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~l 26 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHH
Confidence 5667667888888999999988664
No 106
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.40 E-value=34 Score=21.70 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=27.6
Q ss_pred CCCCceEEEEEcCCCCEE-EEEecCCchHHHH----HHHCCCCc
Q 041173 32 IQKDMVNVTFSDKDGEEK-NIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~~~-~v~~~~G~tLLea----a~~~gI~l 70 (117)
..+.|++|++.. .|+.+ .+++...+|+.+. ....||+.
T Consensus 3 ~~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~ 45 (96)
T 1wgg_A 3 SGSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQP 45 (96)
T ss_dssp SCCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCT
T ss_pred CCCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 456788899884 67778 5999999998764 33467753
No 107
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=40.35 E-value=22 Score=25.94 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCEEEEEecCCchHHHHHHHC
Q 041173 36 MVNVTFSDKDGEEKNIKVPVGMSMLEAVHEN 66 (117)
Q Consensus 36 mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~ 66 (117)
|++|++ ++|. ..+++.|.|+++.|.+-
T Consensus 1 ~i~I~~--p~G~--~~~~~~g~T~~dia~~i 27 (224)
T 1tke_A 1 MPVITL--PDGS--QRHYDHAVSPMDVALDI 27 (224)
T ss_dssp CCEEEC--TTSC--EEECSSCBCHHHHHHHH
T ss_pred CeEEEe--CCCC--EEEecCCCCHHHHHHHH
Confidence 345665 7888 67888999999998775
No 108
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.00 E-value=66 Score=19.67 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCEEEEEecCC-----chHHHH----HHHCCCC
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVG-----MSMLEA----VHENDIE 69 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G-----~tLLea----a~~~gI~ 69 (117)
.+.+++|++.. .|..+++++... .|+.+. ....|++
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip 48 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP 48 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC
Confidence 45689999985 578889999885 776554 2245665
No 109
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=38.61 E-value=40 Score=20.72 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=24.2
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
+|++...+|+..++++...+|+.+. ....|++.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 38 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh
Confidence 5677777899889999999988764 23456654
No 110
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=38.40 E-value=17 Score=23.93 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=24.5
Q ss_pred CCceE--EEEEcCCC-CEEEEEecCCchHHHHHHHCCCC
Q 041173 34 KDMVN--VTFSDKDG-EEKNIKVPVGMSMLEAVHENDIE 69 (117)
Q Consensus 34 ~~mv~--Vt~~~~~G-~~~~v~~~~G~tLLeaa~~~gI~ 69 (117)
-+|+. |.+-.++. ....+++++|.|+.+++...|+.
T Consensus 10 ~~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 10 LNQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH
T ss_pred cceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC
Confidence 34554 44444442 23467888999999999999984
No 111
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=36.76 E-value=44 Score=20.50 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
++|++...+|+...+++...+|+.+. ....|++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~ 39 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 39 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 36777777899889999999988764 33456654
No 112
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=36.40 E-value=50 Score=21.34 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
.+++|++....|+...+++....|+.+. ....|++.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 73 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 73 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh
Confidence 4688999888999999999999988764 22346653
No 113
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=35.55 E-value=77 Score=20.87 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCEEEEEecCCch---HHHHHH-HCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMS---MLEAVH-ENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~t---LLeaa~-~~gI~l 70 (117)
..++|.+.+ +|+...+.++...+ |+++.. +.|++.
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~ 68 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 68 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc
Confidence 457899888 89988888888775 666644 356653
No 114
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=34.54 E-value=85 Score=20.39 Aligned_cols=38 Identities=3% Similarity=0.113 Sum_probs=25.5
Q ss_pred CCCCceEEEEEcCCCC-EEEEEecCCch---HHHH-HHHCCCC
Q 041173 32 IQKDMVNVTFSDKDGE-EKNIKVPVGMS---MLEA-VHENDIE 69 (117)
Q Consensus 32 ~~~~mv~Vt~~~~~G~-~~~v~~~~G~t---LLea-a~~~gI~ 69 (117)
.....++|++.+.+|. ...+.+..... |+++ +.+.|++
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~ 63 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS 63 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC
Confidence 3456688999888884 67888888764 4444 3345654
No 115
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=34.01 E-value=55 Score=20.03 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=15.4
Q ss_pred CCCCEEEEEecCCchHHHH
Q 041173 44 KDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 44 ~~G~~~~v~~~~G~tLLea 62 (117)
..|+...+++....|+.+.
T Consensus 19 ~~g~~~~l~v~~~~TV~~L 37 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDL 37 (85)
T ss_dssp ETTEEEEEEECTTSBHHHH
T ss_pred ECCEEEEEEECCCCcHHHH
Confidence 4688888999999988764
No 116
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.67 E-value=90 Score=19.65 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=23.8
Q ss_pred CceEEEEEcCCC----CEEEEEecCCchHHHH----HHHCCCCc
Q 041173 35 DMVNVTFSDKDG----EEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G----~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
.+++|++....+ +..++++....|+.+. ....||+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~ 49 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA 49 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh
Confidence 456777765433 6778999999988664 23456653
No 117
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.74 E-value=55 Score=20.34 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=20.0
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
+|++....|+..++++....|+.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~L 26 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKAL 26 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHH
Confidence 5677767898889999999987664
No 118
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=30.64 E-value=62 Score=19.77 Aligned_cols=34 Identities=6% Similarity=0.102 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
++|.+....|+...+++....|+.+. ....|++.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~ 47 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP 47 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh
Confidence 46666778899899999999988763 23346653
No 119
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=29.54 E-value=68 Score=18.48 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHH----HHCCCC
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAV----HENDIE 69 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa----~~~gI~ 69 (117)
++|++.. .|+...+++....|+.+.- ...|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 40 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP 40 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 5677776 7888889999999886642 234665
No 120
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=29.52 E-value=82 Score=19.98 Aligned_cols=38 Identities=16% Similarity=0.355 Sum_probs=26.9
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCch---HHHHHH-HCCCCc
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMS---MLEAVH-ENDIEL 70 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~t---LLeaa~-~~gI~l 70 (117)
....++|.+.+.+|+...+.++...+ |+++.. +.|++.
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 45 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 45 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence 34567899998899988899998876 555543 457653
No 121
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.12 E-value=54 Score=20.50 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCEE--EE-EecCCchHHHH---HHH--CCCC
Q 041173 34 KDMVNVTFSDKDGEEK--NI-KVPVGMSMLEA---VHE--NDIE 69 (117)
Q Consensus 34 ~~mv~Vt~~~~~G~~~--~v-~~~~G~tLLea---a~~--~gI~ 69 (117)
-.|++|++.+..|... ++ ++.+..|+.+. +.+ .|++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~ 51 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY 51 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC
Confidence 3468899988877653 47 89999987654 443 4664
No 122
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.12 E-value=24 Score=21.25 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=20.1
Q ss_pred EEEEecCCchHHHHHHHCCCCccC
Q 041173 49 KNIKVPVGMSMLEAVHENDIELEG 72 (117)
Q Consensus 49 ~~v~~~~G~tLLeaa~~~gI~l~~ 72 (117)
.+..++.|+||-..|.+.|+.+..
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~~~ 39 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTMEQ 39 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCHHH
T ss_pred EEEEECCCCcHHHHHHHHCcCHHH
Confidence 356789999999999999997643
No 123
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=29.09 E-value=67 Score=19.88 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=23.4
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHH----HHHCCCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIE 69 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~ 69 (117)
+|++...+|+...+++....|+.+. ....|++
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~ 37 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 5667667888888999999888664 3345665
No 124
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=28.85 E-value=60 Score=21.81 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
++|++....|+..++++...+|+.+. ....|++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 40 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHA 40 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCG
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 56777778899889999999999876 44457764
No 125
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=27.95 E-value=48 Score=21.11 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=23.0
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHHHHCCCCc
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~l 70 (117)
.|.+++.+|+ .+-+-.-..-|+.|.++|++|
T Consensus 15 eVrli~~~Ge--~lGv~~~~eAl~~A~e~~LDL 45 (78)
T 1tif_A 15 EVRLIDQNGD--QLGIKSKQEALEIAARRNLDL 45 (78)
T ss_dssp EEEEECTTSC--EEEEEEHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCc--CCCcccHHHHHHHHHHcCCCE
Confidence 6888888998 444444455678888999986
No 126
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=27.37 E-value=1.2e+02 Score=19.98 Aligned_cols=36 Identities=6% Similarity=0.096 Sum_probs=29.9
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCC
Q 041173 30 CSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHEND 67 (117)
Q Consensus 30 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~g 67 (117)
|......+.|.+.|.+|- .|.+...+.|..|+...+
T Consensus 56 p~l~~~~f~l~Y~DedGD--lItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 56 PALRPGGFQAHYRAERGD--LVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp TTSCSSCEEEEEECTTCC--EEEECSHHHHHHHHHHCC
T ss_pred cccCCCcEEEEEECCCCC--EEEecCHHHHHHHHHhcC
Confidence 344556799999999998 789999999999988766
No 127
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=26.55 E-value=44 Score=20.69 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCEEEE-EecCCchHHHH----HHHCCCCc
Q 041173 33 QKDMVNVTFSDKDGEEKNI-KVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v-~~~~G~tLLea----a~~~gI~l 70 (117)
.+.+++|++.. .|+.+.| ++...+|+.+. ....||+.
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 34567777763 6777788 88889988764 33467753
No 128
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=26.20 E-value=70 Score=24.15 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceEEEEEcCCCCEEEEEecCCch---HHHHH-HHCCC
Q 041173 26 ASHGCSIQKDMVNVTFSDKDGEEKNIKVPVGMS---MLEAV-HENDI 68 (117)
Q Consensus 26 ~~~~~~~~~~mv~Vt~~~~~G~~~~v~~~~G~t---LLeaa-~~~gI 68 (117)
.|+.|......++|. -+||...++++....| |++.+ ..-||
T Consensus 9 ~~~~~~~~~~~~~V~--lldgt~~~~~vd~~tt~~el~~~v~~~l~L 53 (296)
T 3qij_A 9 SGRENLYFQGHCKVS--LLDDTVYECVVEKHAKGQDLLKRVCEHLNL 53 (296)
T ss_dssp --------CCEEEEE--CTTSCEEEEECCTTCBHHHHHHHHHHHHTC
T ss_pred ccCCCCCceEEEEEE--ccCCCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 333443344444444 4789988888886544 44433 33455
No 129
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=24.95 E-value=1.1e+02 Score=19.27 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCEEEEEecCCch---HHHHHH-HCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMS---MLEAVH-ENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~t---LLeaa~-~~gI~l 70 (117)
..++|++.+.+|+...+.++...+ |+++.. +.|++.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~ 43 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 43 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 457899988899988899998876 666543 467653
No 130
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=23.97 E-value=53 Score=23.00 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=17.7
Q ss_pred EEEecCCchHHHHHHHCCCCc
Q 041173 50 NIKVPVGMSMLEAVHENDIEL 70 (117)
Q Consensus 50 ~v~~~~G~tLLeaa~~~gI~l 70 (117)
+..+++|+||.+.|++.++.+
T Consensus 4 ~y~V~~GdtL~~IA~~f~~g~ 24 (165)
T 4a1k_A 4 TYQVKQGDTLNSIAADFRIST 24 (165)
T ss_dssp EEECCTTCCHHHHHHHTTCCH
T ss_pred EEEECCCCCHHHHHHHhCCCH
Confidence 456789999999999998864
No 131
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=23.94 E-value=57 Score=20.20 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEEcCCCCEEEEEec--CCchHHHHHHHCCCC
Q 041173 38 NVTFSDKDGEEKNIKVP--VGMSMLEAVHENDIE 69 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~--~G~tLLeaa~~~gI~ 69 (117)
+|++ .|+ ..+++ ++.||.+.+...|++
T Consensus 2 ~I~v---NGe--~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 2 NLTV---NGK--PSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp EEEE---TTE--EEECSSCSCEEHHHHHHHHTCS
T ss_pred EEEE---CCE--EEEcCCCCCCcHHHHHHHcCCC
Confidence 4554 466 66677 899999999999987
No 132
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=23.57 E-value=1.1e+02 Score=17.69 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCEE-EEE-ecCCchHHHH----HHHCCCCc
Q 041173 37 VNVTFSDKDGEEK-NIK-VPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 37 v~Vt~~~~~G~~~-~v~-~~~G~tLLea----a~~~gI~l 70 (117)
++|++....|+.. .++ +....|+.+. ....|++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~ 42 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEP 42 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcCh
Confidence 5677777788874 888 9999988664 23346653
No 133
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=23.11 E-value=1.6e+02 Score=20.04 Aligned_cols=36 Identities=6% Similarity=0.096 Sum_probs=29.7
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEecCCchHHHHHHHCC
Q 041173 30 CSIQKDMVNVTFSDKDGEEKNIKVPVGMSMLEAVHEND 67 (117)
Q Consensus 30 ~~~~~~mv~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~g 67 (117)
|.....-+.|.+.|.+|- .|.+...+.|..|+...+
T Consensus 71 p~L~~~~f~l~YkDEdGD--lItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 71 PALRPGGFQAHYRAERGD--LVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp TTSCSSCEEEEEECTTCC--EEEECSHHHHHHHHHHCC
T ss_pred cccCCCcEEEEEECCCCC--EEEecCHHHHHHHHHhcC
Confidence 344455699999999998 789999999999988765
No 134
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=22.36 E-value=1.3e+02 Score=20.06 Aligned_cols=36 Identities=6% Similarity=0.154 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCEEEEEecCCchHHHH----HHHCCCCc
Q 041173 35 DMVNVTFSDKDGEEKNIKVPVGMSMLEA----VHENDIEL 70 (117)
Q Consensus 35 ~mv~Vt~~~~~G~~~~v~~~~G~tLLea----a~~~gI~l 70 (117)
..++|++....|+...+++...+|+.+. ....|++.
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 119 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD 119 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCH
Confidence 3467888888899999999999998764 23346654
No 135
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=22.36 E-value=98 Score=20.14 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=23.6
Q ss_pred EEEEEcCCCCEEEEEecCCchHHHHH----HHCCCC
Q 041173 38 NVTFSDKDGEEKNIKVPVGMSMLEAV----HENDIE 69 (117)
Q Consensus 38 ~Vt~~~~~G~~~~v~~~~G~tLLeaa----~~~gI~ 69 (117)
+|++....|+..++++....|+.+.- ...|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 56666678888899999999888742 345665
No 136
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.04 E-value=1.6e+02 Score=18.80 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.0
Q ss_pred cCCCCEE-EEEecCCchHHHHHHHCCC
Q 041173 43 DKDGEEK-NIKVPVGMSMLEAVHENDI 68 (117)
Q Consensus 43 ~~~G~~~-~v~~~~G~tLLeaa~~~gI 68 (117)
.++|.++ .|...+|++.+|+|.+-||
T Consensus 59 ~~~~~KKA~V~L~~~~~a~dva~kigi 85 (86)
T 3j21_T 59 TPRGEKKAYVKLKPEYSASEVAARLGL 85 (86)
T ss_dssp CTTSCEEEEEEECTTSCHHHHHHHSSC
T ss_pred cCCCceEEEEEcCCCCcHHHHHHhhcc
Confidence 3667654 5789999999999998886
No 137
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=21.50 E-value=1.4e+02 Score=17.65 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCEEEEEecCCchHHHHHHHCCCC
Q 041173 37 VNVTFSDKDGEEKNIKVPVGMSMLEAVHENDIE 69 (117)
Q Consensus 37 v~Vt~~~~~G~~~~v~~~~G~tLLeaa~~~gI~ 69 (117)
++|++.... ...+++++++.|+.+.+...+++
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l~~~ 36 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGELEIP 36 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHhCCC
Confidence 477775332 23468888999999999998875
No 138
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.69 E-value=1.4e+02 Score=19.45 Aligned_cols=39 Identities=3% Similarity=0.020 Sum_probs=26.4
Q ss_pred CCCceEEEEEcCC----CCEEEEEecCCchHHHH----HHHCCCCcc
Q 041173 33 QKDMVNVTFSDKD----GEEKNIKVPVGMSMLEA----VHENDIELE 71 (117)
Q Consensus 33 ~~~mv~Vt~~~~~----G~~~~v~~~~G~tLLea----a~~~gI~l~ 71 (117)
...|.+|.+.-++ ++..+++++..+|+.+. +...|++..
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~ 58 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQEN 58 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCST
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHH
Confidence 3446667766666 66789999999987653 445677543
No 139
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=20.37 E-value=1.6e+02 Score=17.90 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCchHHHH
Q 041173 33 QKDMVNVTFSDKDGEEKNIKVPVGMSMLEA 62 (117)
Q Consensus 33 ~~~mv~Vt~~~~~G~~~~v~~~~G~tLLea 62 (117)
.+.+.+|.|.-++|.+..-.....++|-++
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v 33 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIV 33 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHH
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 456678888889999777777777776543
Done!