Query 041177
Match_columns 417
No_of_seqs 294 out of 1252
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1546 Metacaspase involved i 100.0 1.1E-78 2.3E-83 592.6 26.3 295 1-417 62-361 (362)
2 PF00656 Peptidase_C14: Caspas 100.0 3E-32 6.5E-37 257.7 8.4 137 3-150 1-138 (248)
3 cd00032 CASc Caspase, interleu 99.5 6.7E-13 1.4E-17 128.2 19.2 119 2-145 9-133 (243)
4 smart00115 CASc Caspase, inter 99.5 4.8E-12 1E-16 122.4 21.1 118 1-143 7-130 (241)
5 PF01650 Peptidase_C13: Peptid 99.1 1.2E-10 2.7E-15 113.9 8.2 126 3-147 1-166 (256)
6 COG4249 Uncharacterized protei 99.1 3.3E-11 7.1E-16 123.7 3.8 170 1-181 2-258 (380)
7 COG4249 Uncharacterized protei 98.5 2E-08 4.3E-13 103.4 0.7 81 57-148 47-136 (380)
8 PF14538 Raptor_N: Raptor N-te 98.2 6.4E-06 1.4E-10 75.1 9.1 102 24-146 44-151 (154)
9 KOG1348 Asparaginyl peptidases 98.0 5.2E-05 1.1E-09 76.9 11.4 127 1-147 44-214 (477)
10 KOG1349 Gpi-anchor transamidas 97.5 0.00048 1E-08 67.2 9.0 126 2-147 28-198 (309)
11 COG5206 GPI8 Glycosylphosphati 96.5 0.019 4E-07 56.7 9.9 128 3-150 29-201 (382)
12 PF12770 CHAT: CHAT domain 96.0 0.05 1.1E-06 52.7 10.1 109 6-143 82-202 (287)
13 KOG1517 Guanine nucleotide bin 91.3 0.69 1.5E-05 53.3 8.2 101 23-144 139-245 (1387)
14 PF12070 DUF3550: Protein of u 72.2 20 0.00044 38.9 9.1 124 56-188 293-448 (513)
15 COG4995 Uncharacterized protei 69.3 17 0.00037 38.6 7.7 99 16-144 231-333 (420)
16 COG1791 Uncharacterized conser 57.6 41 0.00089 31.6 7.0 61 23-90 49-109 (181)
17 COG0648 Nfo Endonuclease IV [D 55.1 35 0.00076 34.3 6.6 65 57-144 118-182 (280)
18 PF13768 VWA_3: von Willebrand 53.2 38 0.00082 29.6 6.0 46 43-89 2-47 (155)
19 PF13660 DUF4147: Domain of un 52.5 33 0.00072 33.6 5.9 57 54-126 92-150 (238)
20 COG2379 GckA Putative glycerat 52.1 94 0.002 32.9 9.3 46 42-90 79-126 (422)
21 PF03415 Peptidase_C11: Clostr 49.1 36 0.00077 35.7 5.9 80 57-144 78-160 (397)
22 PF06258 Mito_fiss_Elm1: Mitoc 45.4 79 0.0017 32.0 7.6 106 2-135 147-255 (311)
23 PLN02450 1-aminocyclopropane-1 43.0 1.1E+02 0.0024 32.4 8.6 31 113-144 207-237 (468)
24 KOG3425 Uncharacterized conser 39.2 1.1E+02 0.0023 27.4 6.3 60 61-134 10-70 (128)
25 PRK06107 aspartate aminotransf 38.1 1.2E+02 0.0027 31.0 7.8 30 113-142 182-211 (402)
26 TIGR02806 clostrip clostripain 36.5 3.4E+02 0.0074 29.4 10.7 81 59-144 96-184 (476)
27 PF01364 Peptidase_C25: Peptid 35.8 30 0.00066 35.4 2.9 26 57-90 226-251 (378)
28 PRK06108 aspartate aminotransf 35.0 1.3E+02 0.0028 30.1 7.3 30 114-144 175-204 (382)
29 PRK01688 histidinol-phosphate 33.8 81 0.0018 31.7 5.6 108 21-142 54-188 (351)
30 PRK09105 putative aminotransfe 32.4 1.5E+02 0.0032 30.2 7.3 103 26-141 80-207 (370)
31 PRK15367 type III secretion sy 30.9 66 0.0014 33.9 4.4 51 334-401 162-218 (395)
32 PLN02994 1-aminocyclopropane-1 30.7 1.1E+02 0.0024 27.7 5.4 50 21-81 93-146 (153)
33 PF06342 DUF1057: Alpha/beta h 30.5 86 0.0019 31.8 5.0 22 19-40 82-103 (297)
34 TIGR03540 DapC_direct LL-diami 30.5 2.1E+02 0.0046 28.8 8.1 30 113-143 180-209 (383)
35 COG0436 Aspartate/tyrosine/aro 28.9 2E+02 0.0042 30.0 7.6 34 113-147 179-212 (393)
36 PF07521 RMMBL: RNA-metabolisi 28.5 41 0.00089 23.9 1.7 17 117-134 21-37 (43)
37 cd00609 AAT_like Aspartate ami 27.9 2.3E+02 0.005 27.3 7.5 31 114-145 149-179 (350)
38 KOG0256 1-aminocyclopropane-1- 27.4 3.7E+02 0.0081 28.9 9.1 106 26-148 127-276 (471)
39 PRK05942 aspartate aminotransf 26.8 2.7E+02 0.0058 28.3 8.1 29 113-142 186-214 (394)
40 COG0657 Aes Esterase/lipase [L 25.9 3.2E+02 0.0069 26.8 8.2 60 5-71 111-174 (312)
41 PLN02368 alanine transaminase 25.5 2.4E+02 0.0051 29.5 7.5 46 27-82 114-161 (407)
42 KOG1321 Protoheme ferro-lyase 25.4 2.1E+02 0.0045 29.8 6.6 59 27-92 176-241 (395)
43 PRK02363 DNA-directed RNA poly 25.2 30 0.00064 30.9 0.6 48 368-417 8-59 (129)
44 PF10264 Stork_head: Winged he 25.1 1.7E+02 0.0037 24.1 4.9 29 56-90 48-76 (80)
45 cd06451 AGAT_like Alanine-glyo 24.9 3.6E+02 0.0078 26.6 8.4 97 26-137 34-132 (356)
46 PLN02607 1-aminocyclopropane-1 24.7 2.5E+02 0.0055 29.6 7.6 51 20-81 95-149 (447)
47 PRK08636 aspartate aminotransf 24.6 2.9E+02 0.0064 28.2 7.9 30 113-143 191-220 (403)
48 PF05066 HARE-HTH: HB1, ASXL, 24.6 76 0.0016 24.6 2.8 27 365-391 3-29 (72)
49 PF02572 CobA_CobO_BtuR: ATP:c 24.0 1.5E+02 0.0032 27.6 5.0 55 59-134 78-134 (172)
50 PF09827 CRISPR_Cas2: CRISPR a 24.0 2.1E+02 0.0045 22.4 5.3 52 24-83 14-66 (78)
51 PRK05764 aspartate aminotransf 23.9 2.4E+02 0.0053 28.4 7.1 29 114-143 181-209 (393)
52 PRK05387 histidinol-phosphate 23.8 2.3E+02 0.0051 28.0 6.8 101 27-142 63-186 (353)
53 PRK08960 hypothetical protein; 22.9 3.2E+02 0.007 27.6 7.8 29 113-142 181-209 (387)
54 PF03568 Peptidase_C50: Peptid 21.9 1.6E+02 0.0034 30.7 5.3 24 56-88 296-319 (383)
55 PRK08056 threonine-phosphate d 21.8 2.7E+02 0.0058 27.9 6.8 30 113-143 158-187 (356)
56 PRK09440 avtA valine--pyruvate 21.8 6.1E+02 0.013 25.9 9.6 28 113-141 195-222 (416)
57 PRK03321 putative aminotransfe 21.4 6.4E+02 0.014 24.9 9.5 30 113-144 161-190 (352)
58 PRK06207 aspartate aminotransf 21.1 3.3E+02 0.0072 28.0 7.5 30 113-143 194-223 (405)
59 PF13592 HTH_33: Winged helix- 20.8 1.1E+02 0.0023 23.1 2.8 26 380-407 20-46 (60)
60 cd00613 GDC-P Glycine cleavage 20.6 4.7E+02 0.01 26.3 8.4 62 20-89 60-121 (398)
61 PRK07324 transaminase; Validat 20.4 2.5E+02 0.0053 28.5 6.3 28 114-142 170-197 (373)
No 1
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-78 Score=592.58 Aligned_cols=295 Identities=57% Similarity=0.924 Sum_probs=269.9
Q ss_pred CCeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCC-CCCcHHHHHHHHHHHHHhCCCCCEE
Q 041177 1 MTKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRS-TQPTGRNIRRALGNLVRSAEPGDVL 79 (417)
Q Consensus 1 g~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~-~~pTr~nI~~aL~~Lv~~a~pgD~l 79 (417)
|||+||||||||+++..+|+||+|||+.|+++|.++|||++++|++|+|++.+. .+||++||++||+|||+.+++||+|
T Consensus 62 gkrrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~Al~wLV~~aq~gD~L 141 (362)
T KOG1546|consen 62 GKRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRRALRWLVESAQPGDSL 141 (362)
T ss_pred ccceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHHHHHHHHhcCCCCCEE
Confidence 578999999999999999999999999999999999999999999999988766 7899999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcceeecCCCC----CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcCCccchhhcCCC
Q 041177 80 FVHYSGHGTRLPAETGEDDDTGYDECIVPSDMN----LITDDDFREFVDQIPPGCEITVVSDSCHSGGLIDEAKEQIGES 155 (417)
Q Consensus 80 ~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~----~Is~~el~~ll~~l~~g~~l~iILDcChSG~~~d~~~~~ig~s 155 (417)
||||||||.+.++.+| ||.+||||+|||+|++ .|+|++++.||+++|.|+++++|+|+||||+++|.++.. .
T Consensus 142 vfHYSGHGtr~~~~~g-De~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSCHSGgliDlp~i~---~ 217 (362)
T KOG1546|consen 142 VFHYSGHGTRQPDTNG-DEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSCHSGGLIDLPEIE---R 217 (362)
T ss_pred EEEecCCCCcCCCCCC-CCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecccCCCcccchhhe---e
Confidence 9999999999999888 8999999999999999 789999999999999999999999999999999988762 1
Q ss_pred cccchhhhcCCCCchhHHHHHHHHHHHHhcCccCCCCCcCCCCCCCCccchhhhhccCCCCCcccCCCCChhHHHHHHHH
Q 041177 156 TRRDEEEESGSGFNFKSFLHKKVENAFESRGIHIPSGLRHHRPSGDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEILKQ 235 (417)
Q Consensus 156 t~~~~e~e~~g~g~FT~~L~~~L~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lp~~~~~~~l~~ 235 (417)
+++.+|+|++|+++.+++|++
T Consensus 218 -----------------------------------------------------------~~~~ir~~~l~~e~~~d~l~~ 238 (362)
T KOG1546|consen 218 -----------------------------------------------------------TKGVIRNRNLPWEDHRDLLKA 238 (362)
T ss_pred -----------------------------------------------------------cccccccCccchHHhHHHHHh
Confidence 233689999999999999999
Q ss_pred hhCCCCcccCccccchhhhccCCcchHHHHHHHHHHHhhhcCCCCCCCCCccchhhhhHHHHHhhhcccCccccccccch
Q 041177 236 QTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQGDGESGGGGFLGMVGSLAQEFLKHKLEESDESYAKPALE 315 (417)
Q Consensus 236 ~~g~~~~~~~~i~~~l~~~fg~~as~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (417)
.+|.+.+++++|+.+|+++||+|+||. ..+ .+ +.++
T Consensus 239 ~tG~~~ge~~~i~~~l~d~f~~dts~~-~~~------------------~~-~~~~------------------------ 274 (362)
T KOG1546|consen 239 QTGTDGGEVGKIRGCLDDIFGEDTSPL-PNG------------------TI-GDLG------------------------ 274 (362)
T ss_pred hcCCCCceeeeeecchhhhhcccCCCC-CCc------------------ch-hhhh------------------------
Confidence 999999999999999999999999981 111 00 1111
Q ss_pred hccccccccccCCCCCCCCCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 041177 316 TEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKK 395 (417)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~ 395 (417)
.+.+.+ ++++||+||||++|||||+...| ..+||||+||+.+|.++++.+++.+|+.++|..|++
T Consensus 275 -----------~~~~~~-~d~~illSgcqadqtSad~~~~G---~~~gAms~Aiq~i~~~n~g~~~~~~lvl~~~~~~~~ 339 (362)
T KOG1546|consen 275 -----------RQLKDS-HDNGILLSGCQADQTSADASTYG---HLYGAMSNAIQEILTENKGRITNKLLVLRARGALKK 339 (362)
T ss_pred -----------hhcccC-CCCceEEecccccccccccccCC---cchhHHHHHHHHHHhcCcccchhHHHHHHHhhhhhc
Confidence 122334 79999999999999999999999 889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccC
Q 041177 396 QGFTQQPGLYCHDNHVDKPFIC 417 (417)
Q Consensus 396 ~~y~Q~PqL~~s~~~~~~~fi~ 417 (417)
+||+|.|||||||+.++.+|||
T Consensus 340 ~g~sQ~P~L~csd~~~~~~~~~ 361 (362)
T KOG1546|consen 340 QGFSQEPGLYCSDPFDVAPFIC 361 (362)
T ss_pred cCcccCccccCCccccccceec
Confidence 9999999999999999999998
No 2
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=99.97 E-value=3e-32 Score=257.68 Aligned_cols=137 Identities=42% Similarity=0.769 Sum_probs=113.8
Q ss_pred eEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEE
Q 041177 3 KKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVH 82 (417)
Q Consensus 3 r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fY 82 (417)
|+|||||||||+...+|+||+||+++|+++| +.+||++.++ +.+. ||+++|+++|+++++...++|.++||
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L-~~~gf~~~~~--l~~~------~t~~~i~~~l~~l~~~~~~~D~~~~y 71 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEAL-EKLGFDVENI--LIDN------ATRANILKALRELLQRAQPGDSVVFY 71 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHH-HHTTEEEEEE--EEES------SSHHHHHHHHHHHHTSGGTCSEEEEE
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHH-HHcCCceeec--cccc------hHHHHHHHHHhhhhccCCCCCeeEEE
Confidence 7999999998887799999999999999999 6789998776 4442 89999999999999998899999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh-CCCCCeEEEEEeCCCCCcCCccchh
Q 041177 83 YSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ-IPPGCEITVVSDSCHSGGLIDEAKE 150 (417)
Q Consensus 83 FSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~-l~~g~~l~iILDcChSG~~~d~~~~ 150 (417)
|||||.+.++..+ .+..+++++++|.|.+.+..++|..++.+ ++...+ ++||||||||.+.+....
T Consensus 72 fsGHG~~~~~~~~-~~~~~~d~~~~~~d~~~~~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~ 138 (248)
T PF00656_consen 72 FSGHGIQVDGEGG-DEDSGYDGYLLPLDANLILDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSS 138 (248)
T ss_dssp EESEEETETTCCS-TEEEETSSEEEEHHHHEEHHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEE
T ss_pred EeccccccCCccC-cccccccceeeecchhhhHHHHHhhhhhhhccCCcc-EEeeccccCCccCCcccc
Confidence 9999988765422 34556788899988766667777777777 766567 899999999998876443
No 3
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=99.53 E-value=6.7e-13 Score=128.23 Aligned_cols=119 Identities=17% Similarity=0.268 Sum_probs=97.5
Q ss_pred CeEEEEEeeC-CCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHH-hCCCCCEE
Q 041177 2 TKKAVLIGIN-YPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVR-SAEPGDVL 79 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~-~a~pgD~l 79 (417)
+++|||||+. |.....++.|+.+|+++|+++|+ .+||+ |.+..| +|...|.++|+++.+ +.+..|.+
T Consensus 9 ~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~n-------lt~~~~~~~l~~f~~~~~~~~d~~ 77 (243)
T cd00032 9 RGLALIINNENFDKGLKDRDGTDVDAENLTKLFE-SLGYE---VEVKNN-------LTAEEILEELKEFASPDHSDSDSF 77 (243)
T ss_pred CCEEEEEechhcCCCCCCCCChHHHHHHHHHHHH-HCCCE---EEEeCC-------CCHHHHHHHHHHHHhccCCCCCee
Confidence 6899999997 65436789999999999999998 58996 677777 799999999999985 67789999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHH--hCCC--CCeEEEEEeCCCCCcCC
Q 041177 80 FVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVD--QIPP--GCEITVVSDSCHSGGLI 145 (417)
Q Consensus 80 ~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~--~l~~--g~~l~iILDcChSG~~~ 145 (417)
+|||+|||.. ++ |+|.|...++.++|...+. ..|. ++--++|+|+|+...+.
T Consensus 78 v~~~~sHG~~-----------~~---l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~~ 133 (243)
T cd00032 78 VCVILSHGEE-----------GG---IYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDELD 133 (243)
T ss_pred EEEECCCCCC-----------CE---EEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcCC
Confidence 9999999963 23 8999987788888887776 3442 34457999999976554
No 4
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=99.48 E-value=4.8e-12 Score=122.38 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=94.7
Q ss_pred CCeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh--CCCCCE
Q 041177 1 MTKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS--AEPGDV 78 (417)
Q Consensus 1 g~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~--a~pgD~ 78 (417)
.+++|||||+..+....+++|+.+|+++|+++|+ .+||. |++..| +|...|.++|+++.+. .+..|.
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~d-------lt~~em~~~l~~~~~~~~~~~~d~ 75 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQ-SLGYE---VHVKNN-------LTAEEMLEELKEFAERPEHSDSDS 75 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC-------CCHHHHHHHHHHHHhccccCCCCE
Confidence 3789999999733446789999999999999998 58996 677777 7999999999999874 457899
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHH--hCCC--CCeEEEEEeCCCCCc
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVD--QIPP--GCEITVVSDSCHSGG 143 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~--~l~~--g~~l~iILDcChSG~ 143 (417)
++|||+|||.. |+ |+|.|...++.++|..++. ..|. ++--++|+|+|+...
T Consensus 76 ~v~~~~sHG~~-----------~~---l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~ 130 (241)
T smart00115 76 FVCVLLSHGEE-----------GG---IYGTDHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDE 130 (241)
T ss_pred EEEEEcCCCCC-----------Ce---EEEecCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCC
Confidence 99999999942 24 9999988788888888773 3332 344579999998653
No 5
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=99.13 E-value=1.2e-10 Score=113.88 Aligned_cols=126 Identities=25% Similarity=0.350 Sum_probs=90.2
Q ss_pred eEEEEEeeC-CCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCC----CCC----------------------
Q 041177 3 KKAVLIGIN-YPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDD----RST---------------------- 55 (417)
Q Consensus 3 r~ALlIGIN-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~----~~~---------------------- 55 (417)
+|||||+-+ +.. .-|- .+|+-.|++.|++ +||++++|.++.-++- ..+
T Consensus 1 ~wAvlvagS~~~~---NYRh-~ad~~~~Y~~l~~-~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY 75 (256)
T PF01650_consen 1 NWAVLVAGSNGWF---NYRH-QADVCHAYQLLKR-NGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDY 75 (256)
T ss_pred CEEEEEeccCCce---eeeE-ehHHHHHHHHHHH-cCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCccccc
Confidence 699999985 221 1222 4899999999996 8999999988775441 111
Q ss_pred ---CCcHHHHHHHHHHH-------HHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh
Q 041177 56 ---QPTGRNIRRALGNL-------VRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ 125 (417)
Q Consensus 56 ---~pTr~nI~~aL~~L-------v~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~ 125 (417)
..|.+++++.|.-- +-...++|.||+||+|||... + |.-.+.+.|+..+|..+|+.
T Consensus 76 ~g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~-----------~---l~~~~~~~l~~~~L~~~L~~ 141 (256)
T PF01650_consen 76 RGEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPG-----------F---LKFPDGEELTADDLADALDK 141 (256)
T ss_pred cccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCC-----------c---ccCCCcccccHHHHHHHHHH
Confidence 34455555555411 114568999999999999742 2 32225667999999999998
Q ss_pred CCCC---CeEEEEEeCCCCCcCCcc
Q 041177 126 IPPG---CEITVVSDSCHSGGLIDE 147 (417)
Q Consensus 126 l~~g---~~l~iILDcChSG~~~d~ 147 (417)
+... .++++++|+|+||++.+.
T Consensus 142 m~~~~~y~~lv~~veaC~SGs~~~~ 166 (256)
T PF01650_consen 142 MHEKKRYKKLVFVVEACYSGSFFEG 166 (256)
T ss_pred HHhhCCcceEEEEEecccccchhhc
Confidence 8763 458999999999999877
No 6
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=99.12 E-value=3.3e-11 Score=123.71 Aligned_cols=170 Identities=23% Similarity=0.275 Sum_probs=115.1
Q ss_pred CCeEEEEEeeC-CCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEee-------------------------------
Q 041177 1 MTKKAVLIGIN-YPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLI------------------------------- 48 (417)
Q Consensus 1 g~r~ALlIGIN-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~------------------------------- 48 (417)
+||-||+||.+ |+.. .+|.++.||+..|+.+|.. .||+.-+..-+.
T Consensus 2 ~~r~alvigns~~~~a-a~l~np~~da~~~a~~L~~-iGfdvy~~~d~~~~~~~~~L~~f~~da~ga~~al~~~aGhg~Q 79 (380)
T COG4249 2 ERRVALVIGNSTYYVA-APLANPANDAGAMALWLTA-IGFDVYLDTDLPKSGLRRALRYFAEDAEGADVALIYYAGHGLQ 79 (380)
T ss_pred CcceEEEeecCccccc-ccCCCchhhHHHHHHHHHH-cCceeecccccchHHHHhHHHHHHHHHHHHhHHHhhhcccccc
Confidence 47889999998 6654 7899999999999999984 677531000000
Q ss_pred ----------cC--C-CC-------------CCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCC
Q 041177 49 ----------DT--D-DR-------------STQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGY 102 (417)
Q Consensus 49 ----------D~--~-~~-------------~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~ 102 (417)
+. . +. ...|++..|+..|..+.++..+.|.++|||||||.... .+| .+
T Consensus 80 ~~~~~~~~pv~~~~~~~~~~~~~~v~~~~~~~~~p~~~~V~~~~lD~~~~~~~~d~~~~~fsG~g~~~~-~d~----~~- 153 (380)
T COG4249 80 VDGTNYLLPVDADDVSPTFAVTEAVLIDCRLIPLPARTKVRRVLLDAARDNPPADTILFFFSGHGATPG-ADG----RA- 153 (380)
T ss_pred ccCccccccchhhhccccchhhhhhhhhhhcccCCchhHHHHHHHHHhhcCchhhhhhheeeccccccC-CCC----ce-
Confidence 00 0 00 12578999999999999998889999999999999863 222 12
Q ss_pred cceeecCCCC----------CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcCCccch-hhc-------------CCCccc
Q 041177 103 DECIVPSDMN----------LITDDDFREFVDQIPPGCEITVVSDSCHSGGLIDEAK-EQI-------------GESTRR 158 (417)
Q Consensus 103 de~lvP~D~~----------~Is~~el~~ll~~l~~g~~l~iILDcChSG~~~d~~~-~~i-------------g~st~~ 158 (417)
+|+|.|.+ .++.-.+..++.-... .+.+.++|+||+|.+..... .++ .....|
T Consensus 154 --~lia~~t~p~~~a~~~~~~~s~~~~~~~~~~~~~-~~ql~~~d~~~~~~~~~~~~~~~~p~l~~s~~~~~~~~~~~~~ 230 (380)
T COG4249 154 --YLIAFDTRPGAVAYDGEGGISPYSVAQALHLSEP-GNQLVDLDACVRGDVFKATAGQQRPWLAQSLAREFGFGILDSC 230 (380)
T ss_pred --eEEeecCChhhhcccCCCcccHHHHHHHHHhccC-CceeehhhhhcchhhhcccccccchHhhhhhhcceeeeeccCC
Confidence 59999986 2444444444444443 46789999999998865422 111 111234
Q ss_pred chhh---h--cCCCCchhHHHHHHHHHH
Q 041177 159 DEEE---E--SGSGFNFKSFLHKKVENA 181 (417)
Q Consensus 159 ~~e~---e--~~g~g~FT~~L~~~L~g~ 181 (417)
...+ | ..+|++||..+++++++.
T Consensus 231 ap~~~~~e~~~~g~gv~t~al~~~l~~~ 258 (380)
T COG4249 231 APDQQSAEAPELGHGVFTDALLEGLRGG 258 (380)
T ss_pred CCCccccccccccCceeehhhhhccccc
Confidence 3222 3 789999999999999973
No 7
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=98.53 E-value=2e-08 Score=103.38 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHH-------HHHHHHhCCC-
Q 041177 57 PTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDD-------FREFVDQIPP- 128 (417)
Q Consensus 57 pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~e-------l~~ll~~l~~- 128 (417)
-.++.++..|+.+.++++.-|++||||||||.+.. | . .+++|.|+...+-.. +.......|.
T Consensus 47 ~~~~~~~~~L~~f~~da~ga~~al~~~aGhg~Q~~---~----~---~~~~pv~~~~~~~~~~~~~~v~~~~~~~~~p~~ 116 (380)
T COG4249 47 LPKSGLRRALRYFAEDAEGADVALIYYAGHGLQVD---G----T---NYLLPVDADDVSPTFAVTEAVLIDCRLIPLPAR 116 (380)
T ss_pred cchHHHHhHHHHHHHHHHHHhHHHhhhcccccccc---C----c---cccccchhhhccccchhhhhhhhhhhcccCCch
Confidence 34567888899999999888999999999998864 2 1 248898875211111 1112222332
Q ss_pred -CCeEEEEEeCCCCCcCCccc
Q 041177 129 -GCEITVVSDSCHSGGLIDEA 148 (417)
Q Consensus 129 -g~~l~iILDcChSG~~~d~~ 148 (417)
.++ .+|+|.|+.-...+..
T Consensus 117 ~~V~-~~~lD~~~~~~~~d~~ 136 (380)
T COG4249 117 TKVR-RVLLDAARDNPPADTI 136 (380)
T ss_pred hHHH-HHHHHHhhcCchhhhh
Confidence 333 3688999888775443
No 8
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=98.21 E-value=6.4e-06 Score=75.09 Aligned_cols=102 Identities=23% Similarity=0.423 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhc-CCCCc-cEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCC
Q 041177 24 NDVKRMYACLVDRY-GFSEE-NITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTG 101 (417)
Q Consensus 24 nDa~~m~~~L~~~~-Gf~~~-dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG 101 (417)
+-.+.+.+.|...| .+.+. .+..+.| ||.+++++.+..+-++++. +.++|||-|||...+..+|+
T Consensus 44 ~~~~~I~~~l~~qY~~~~~~~~~~~~~d-------pt~e~~~~~~~~~R~~a~~-~RvLFHYnGhGvP~Pt~~Ge----- 110 (154)
T PF14538_consen 44 KASEEIGKNLQSQYESWQPRARYKQSLD-------PTVEDLKRLCQSLRRNAKD-ERVLFHYNGHGVPRPTENGE----- 110 (154)
T ss_pred hHHHHHHHHHHHHHHHhCccCcEEEecC-------CCHHHHHHHHHHHHhhCCC-ceEEEEECCCCCCCCCCCCe-----
Confidence 55666777777643 34332 3555665 8999999999999888854 99999999999988755541
Q ss_pred CcceeecCC-CC---CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcCCc
Q 041177 102 YDECIVPSD-MN---LITDDDFREFVDQIPPGCEITVVSDSCHSGGLID 146 (417)
Q Consensus 102 ~de~lvP~D-~~---~Is~~el~~ll~~l~~g~~l~iILDcChSG~~~d 146 (417)
.++..+ +. .++..||.+|+. .-.++|+||..+|.+++
T Consensus 111 ---Iw~f~~~~tqyip~si~dL~~~lg-----~Psi~V~DC~~AG~il~ 151 (154)
T PF14538_consen 111 ---IWVFNKNYTQYIPLSIYDLQSWLG-----SPSIYVFDCSNAGSILN 151 (154)
T ss_pred ---EEEEcCCCCcceEEEHHHHHHhcC-----CCEEEEEECCcHHHHHH
Confidence 222222 21 356666655543 45689999999998764
No 9
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=5.2e-05 Score=76.94 Aligned_cols=127 Identities=25% Similarity=0.364 Sum_probs=86.8
Q ss_pred CCeEEEEEee-C-CCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCC-CC------------------------
Q 041177 1 MTKKAVLIGI-N-YPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTD-DR------------------------ 53 (417)
Q Consensus 1 g~r~ALlIGI-N-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~-~~------------------------ 53 (417)
|.|||+||.= | |++... ..|+---.+.|+ +.|.+++||+++.-+| +.
T Consensus 44 gt~waVLVAGSngyyNYRH-----QADvcHAYqiLr-kgGikeEnIvv~MYDDIA~~~~NPrpG~iiN~P~G~DvY~Gvp 117 (477)
T KOG1348|consen 44 GTRWAVLVAGSNGYYNYRH-----QADVCHAYQILR-KGGIKEENIVVMMYDDIANNEENPRPGVIINRPNGKDVYQGVP 117 (477)
T ss_pred ceeEEEEEecCCcccchhh-----hhhHHHHHHHHH-hcCCCchhEEEEEehhhhcCCCCCCCceeecCCCchhhhcCCC
Confidence 5899999976 4 766433 467777889998 5799999998766332 10
Q ss_pred ----CCCCcHHHHHHHHHH---HHH-------hCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHH
Q 041177 54 ----STQPTGRNIRRALGN---LVR-------SAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDF 119 (417)
Q Consensus 54 ----~~~pTr~nI~~aL~~---Lv~-------~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el 119 (417)
....|.+|+++.|.- -++ ...|+|.+|+||+-||..- . |.--+...|...+|
T Consensus 118 kDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pG-----------v---l~mP~~~~l~akdl 183 (477)
T KOG1348|consen 118 KDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPG-----------V---LGMPTSPDLYAKDL 183 (477)
T ss_pred CcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCc-----------e---EecCCCcchhHHHH
Confidence 124677888877641 122 2468999999999999741 1 22223334556666
Q ss_pred HHHHHhC---CCCCeEEEEEeCCCCCcCCcc
Q 041177 120 REFVDQI---PPGCEITVVSDSCHSGGLIDE 147 (417)
Q Consensus 120 ~~ll~~l---~~g~~l~iILDcChSG~~~d~ 147 (417)
.+.|... ..-.++++.+.+|-||++.+.
T Consensus 184 nevL~kmhk~k~Y~~mvfYlEACESGSmfeg 214 (477)
T KOG1348|consen 184 NEVLKKMHKSKTYKKMVFYLEACESGSMFEG 214 (477)
T ss_pred HHHHHHHHhccchheEEEEeeeccCcchhhh
Confidence 6655443 345789999999999999763
No 10
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00048 Score=67.22 Aligned_cols=126 Identities=23% Similarity=0.411 Sum_probs=86.6
Q ss_pred CeEEEEEeeC--CCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCC-CC-------------------------
Q 041177 2 TKKAVLIGIN--YPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTD-DR------------------------- 53 (417)
Q Consensus 2 ~r~ALlIGIN--Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~-~~------------------------- 53 (417)
+.||+||.-+ ++.. + -+..+-.|.+.++ +.|++..+|.++.-++ +.
T Consensus 28 nNwAVLv~tSRfwfNY----R-H~aNvl~~YrsvK-rlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~v 101 (309)
T KOG1349|consen 28 NNWAVLVCTSRFWFNY----R-HVANVLSVYRSVK-RLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGDDV 101 (309)
T ss_pred CceEEEEecchhhhhH----H-HHHHHHHHHHHHH-HcCCCcccEEEEeccccccccCCCCCcceeccccccccccCCcc
Confidence 4699999886 2221 1 2566777888887 6899998887655322 10
Q ss_pred -----CCCCcHHHHHHHHHHHHHh---------CCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHH
Q 041177 54 -----STQPTGRNIRRALGNLVRS---------AEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDF 119 (417)
Q Consensus 54 -----~~~pTr~nI~~aL~~Lv~~---------a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el 119 (417)
..+.|-+|.++.|..-... +..+-.+|+|..|||. +|+ |-..|.+-|+.+||
T Consensus 102 evdyrgyevtvEnflr~LTgR~~~~tprSKrlltDe~SNIlIYmtGHGg-----------d~F---lKFqd~eelts~dL 167 (309)
T KOG1349|consen 102 EVDYRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEGSNILIYLTGHGG-----------DGF---LKFQDAEELTSDDL 167 (309)
T ss_pred eeecccchhHHHHHHHHHcCCCCCCCchhhhhcccCCCcEEEEEccCCC-----------ccc---eecccHHHhhhHHH
Confidence 1346677777776421111 2356789999999995 234 77788888899999
Q ss_pred HHHHHhC--CC-CCeEEEEEeCCCCCcCCcc
Q 041177 120 REFVDQI--PP-GCEITVVSDSCHSGGLIDE 147 (417)
Q Consensus 120 ~~ll~~l--~~-g~~l~iILDcChSG~~~d~ 147 (417)
..-++++ ++ -..+++++|+|.+.++.+.
T Consensus 168 adai~qm~e~~Ryneil~miDTCQaasly~~ 198 (309)
T KOG1349|consen 168 ADAIQQMWEKKRYNEILFMIDTCQAASLYER 198 (309)
T ss_pred HHHHHHHHHhhhhceEEEEeeccchHHHHHh
Confidence 8877777 22 4568999999999988654
No 11
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.019 Score=56.72 Aligned_cols=128 Identities=20% Similarity=0.350 Sum_probs=87.7
Q ss_pred eEEEEEeeC--CCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCC-C---------------------------
Q 041177 3 KKAVLIGIN--YPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTD-D--------------------------- 52 (417)
Q Consensus 3 r~ALlIGIN--Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~-~--------------------------- 52 (417)
.||+||--+ +++. |- ...|--|.+.++ +.|++..+|.++.-++ .
T Consensus 29 NwAvLlstSRfwfNY----RH-mANVl~~Yr~vk-rlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyge~~e 102 (382)
T COG5206 29 NWAVLLSTSRFWFNY----RH-MANVLVFYRVVK-RLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYGEDSE 102 (382)
T ss_pred ceEEEEecccceeeh----hh-hhhHHHHHHHHH-HcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeCcccc
Confidence 589999875 2221 11 345777888887 6899988876654322 1
Q ss_pred ---CCCCCcHHHHHHHHHHHHHh---------CCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHH
Q 041177 53 ---RSTQPTGRNIRRALGNLVRS---------AEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFR 120 (417)
Q Consensus 53 ---~~~~pTr~nI~~aL~~Lv~~---------a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~ 120 (417)
+..++|-++.++-|...... +.+...+|+|..|||. +++ |-..|.+.++.++|.
T Consensus 103 idY~gyevTve~firLLt~r~~en~p~sKrlltdE~SNIfIYmtGHGg-----------d~F---lKFqdaeemtseDla 168 (382)
T COG5206 103 IDYSGYEVTVEVFIRLLTARSGENHPKSKRLLTDESSNIFIYMTGHGG-----------DAF---LKFQDAEEMTSEDLA 168 (382)
T ss_pred cccccccchHHHHHHHHHhhccCCChhhhhhcccccCcEEEEEccCCC-----------ccc---eecccHHHhhhHHHH
Confidence 01358888888777544321 2355689999999995 234 667777778888888
Q ss_pred HHHHhCCC---CCeEEEEEeCCCCCcCCccchh
Q 041177 121 EFVDQIPP---GCEITVVSDSCHSGGLIDEAKE 150 (417)
Q Consensus 121 ~ll~~l~~---g~~l~iILDcChSG~~~d~~~~ 150 (417)
..++++.+ -..+++++|+|...++.+..+.
T Consensus 169 dai~ql~~~kRyNeIlfmiDTCQAnaly~k~ys 201 (382)
T COG5206 169 DAISQLAAKKRYNEILFMIDTCQANALYDKSYS 201 (382)
T ss_pred HHHHHHHHhhhhceEEEEeeccccchhhhhccC
Confidence 77777654 3458899999999988776543
No 12
>PF12770 CHAT: CHAT domain
Probab=95.99 E-value=0.05 Score=52.73 Aligned_cols=109 Identities=25% Similarity=0.376 Sum_probs=69.3
Q ss_pred EEEeeCCCC-------CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCE
Q 041177 6 VLIGINYPG-------TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDV 78 (417)
Q Consensus 6 LlIGINY~~-------~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~ 78 (417)
|+|+..... ...+|.+....+..+.+.+... +. .++... .+|++++++.+ .....
T Consensus 82 l~i~~p~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~~-~~-----~~~~~~-----~at~~~l~~~l-------~~~~~ 143 (287)
T PF12770_consen 82 LVIGNPDFGGSLIRGAALSPLPGAQREADALAELLGAG-GL-----RVLVGP-----EATKDALLEAL-------ERRGP 143 (287)
T ss_pred EEEecCCCcccccccccccCchHHHHHHHHHHHHhccc-ce-----eEeecc-----CCCHHHHHhhh-------ccCCC
Confidence 666665322 1368899999999998888631 11 334443 38999998887 23445
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCC-----CCCCCHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSD-----MNLITDDDFREFVDQIPPGCEITVVSDSCHSGG 143 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D-----~~~Is~~el~~ll~~l~~g~~l~iILDcChSG~ 143 (417)
=+|||+|||...... . ....|+..+ ...++..+|..+ .++. .+ +|||=+|+|+.
T Consensus 144 ~ilH~a~Hg~~~~~~----~---~~~~l~l~~~~~~~~~~l~~~~l~~l--~l~~-~~-lVvLsaC~s~~ 202 (287)
T PF12770_consen 144 DILHFAGHGTFDPDP----P---DQSGLVLSDESGQEDGLLSAEELAQL--DLRG-PR-LVVLSACESAS 202 (287)
T ss_pred CEEEEEcccccCCCC----C---CCCEEEEeccCCCCCcccCHHHHHhh--cCCC-CC-EEEecCcCCcC
Confidence 599999999987321 1 122355552 335777777662 3331 23 58899999993
No 13
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.26 E-value=0.69 Score=53.33 Aligned_cols=101 Identities=22% Similarity=0.386 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhcC-CCC-ccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCC
Q 041177 23 VNDVKRMYACLVDRYG-FSE-ENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDT 100 (417)
Q Consensus 23 ~nDa~~m~~~L~~~~G-f~~-~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~d 100 (417)
..-++.|-+-|...|. +.+ ..-++.+| ||.+.+++-...+-+.+ .+|.++|||-|||...|..+|+
T Consensus 139 ~KA~e~IG~nlq~qYE~wqprtRYK~~lD-------P~vddVrKlc~slRr~a-k~eRvLFHYNGHGVPkPT~nGE---- 206 (1387)
T KOG1517|consen 139 PKALEAIGKNLQRQYERWQPRTRYKVCLD-------PTVDDVRKLCTSLRRNA-KEERVLFHYNGHGVPKPTANGE---- 206 (1387)
T ss_pred hHHHHHHHHHHHHHHHhhChhhhhhhccC-------CcHHHHHHHHHHHhhhc-CCceEEEEecCCCCCCCCCCCc----
Confidence 3555666666665442 322 23344555 89999998877776665 6899999999999999876662
Q ss_pred CCcceeecC-CC-CC--CCHHHHHHHHHhCCCCCeEEEEEeCCCCCcC
Q 041177 101 GYDECIVPS-DM-NL--ITDDDFREFVDQIPPGCEITVVSDSCHSGGL 144 (417)
Q Consensus 101 G~de~lvP~-D~-~~--Is~~el~~ll~~l~~g~~l~iILDcChSG~~ 144 (417)
.+|.- .+ ++ ++.-||..||.. -.+.|.||-..+.+
T Consensus 207 ----IWVFNK~fTQYIPlsi~dLqsWl~a-----P~IyVydcssA~~I 245 (1387)
T KOG1517|consen 207 ----IWVFNKSFTQYIPLSIFDLQSWLGA-----PTIYVYDCSSAENI 245 (1387)
T ss_pred ----EEEEecCcceeecccHHHHHhhhcC-----CeEEEEeccchHHH
Confidence 23221 11 12 455677888864 23678998777744
No 14
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.
Probab=72.20 E-value=20 Score=38.87 Aligned_cols=124 Identities=21% Similarity=0.245 Sum_probs=78.5
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCC--------------------CCC
Q 041177 56 QPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMN--------------------LIT 115 (417)
Q Consensus 56 ~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~--------------------~Is 115 (417)
.||-..++.-|..-++...++-.+++|.|.+|....... +++.+|+..-+..+.+ .|-
T Consensus 293 rPT~sqll~~LAt~~kELP~n~~lLlYlSA~G~~~~~~~--~~~~~y~~ggv~t~~~~~~~~~~~~~~~~~~~~~~~~Ly 370 (513)
T PF12070_consen 293 RPTFSQLLAFLATAFKELPPNGALLLYLSADGCFSTSKS--DSDGPYDFGGVLTNSNRDSNNGDCLWKRNQGNKEMHCLY 370 (513)
T ss_pred cCCHHHHHHHHHHHHHhcCCCceEEEEEeccCcccCCCC--CccccCCCCCcCCCCcccccCCcccccCCcccCCCcccc
Confidence 599999999999999999999999999999997543221 1223344322221111 111
Q ss_pred HHHHHHHHHhCCC-CCeEEEEEeCCCCCcCCccchhhcCCCcccc--------hhh---hcCCCCchhHHHHHHHHHHHH
Q 041177 116 DDDFREFVDQIPP-GCEITVVSDSCHSGGLIDEAKEQIGESTRRD--------EEE---ESGSGFNFKSFLHKKVENAFE 183 (417)
Q Consensus 116 ~~el~~ll~~l~~-g~~l~iILDcChSG~~~d~~~~~ig~st~~~--------~e~---e~~g~g~FT~~L~~~L~g~~~ 183 (417)
-.|| +|- .+-+.+|+|+=.|-.+...+ ...|.+..|= .-+ ....+..||-||..-|.....
T Consensus 371 P~DL------~PFTRkPLFlIVDSdnS~aF~~l~-~~fGqP~v~LlSP~~~p~~~~~~~~~~~GslFT~FL~~Pl~AFC~ 443 (513)
T PF12070_consen 371 PGDL------YPFTRKPLFLIVDSDNSHAFKNLP-NEFGQPLVCLLSPKSIPKPLSDQSSSHRGSLFTLFLHAPLQAFCR 443 (513)
T ss_pred hhhc------cccccCCeEEEEeCCccHHhhhcc-cccCCeEEEEeCCcccCcccccccccccchHHHHHHhCHHHHHHH
Confidence 1111 221 24588999999999887776 4445443221 011 146678999999998876655
Q ss_pred hcCcc
Q 041177 184 SRGIH 188 (417)
Q Consensus 184 ~~g~~ 188 (417)
-+|+.
T Consensus 444 i~~~~ 448 (513)
T PF12070_consen 444 ICGLS 448 (513)
T ss_pred HcCCC
Confidence 55553
No 15
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.31 E-value=17 Score=38.55 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=60.5
Q ss_pred CCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCC
Q 041177 16 KAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETG 95 (417)
Q Consensus 16 ~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G 95 (417)
..+|+++...|+.+++.+... +++.+.+ -|.++....++.. +.=++||+.||.... |
T Consensus 231 ~~~Lp~~~~Ev~~Ia~~~~~~--------~~ll~q~-----Ft~~~~~~~~~~~-------~~~vvHlATHg~f~s---~ 287 (420)
T COG4995 231 FDALPFAALEVETIAAIFPPQ--------KLLLNQA-----FTAANLAQEIDTK-------PYSVVHLATHGQFSS---G 287 (420)
T ss_pred ccccchHHHHHHHHHHhhhhH--------Hhhhccc-----chhhHHhhhhhcC-------CCceEEEeccccccC---C
Confidence 568999999999998887421 2344431 3444444444332 344999999998865 2
Q ss_pred CCCCCCCcceeecCCCCCCCHHHHHHHHHh----CCCCCeEEEEEeCCCCCcC
Q 041177 96 EDDDTGYDECIVPSDMNLITDDDFREFVDQ----IPPGCEITVVSDSCHSGGL 144 (417)
Q Consensus 96 ~de~dG~de~lvP~D~~~Is~~el~~ll~~----l~~g~~l~iILDcChSG~~ 144 (417)
..+ +..|+.+|.+. ..+++..++.. ..+ +.+ +||-+|-.|..
T Consensus 288 ~p~----~S~l~~~~~~~-~~~~~~~~~~~~~~~~~~-vdL-vVLSACqTa~g 333 (420)
T COG4995 288 NPE----DSFLLLWDGPI-NVTELDILLRNRNNNLLP-VEL-VVLSACQTALG 333 (420)
T ss_pred Ccc----cceeeecCCCC-cccHHHHHHHhcccCCCC-eee-EEEecchhccC
Confidence 112 33488888762 23344444444 332 565 78999999874
No 16
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=57.64 E-value=41 Score=31.59 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCC
Q 041177 23 VNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRL 90 (417)
Q Consensus 23 ~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~ 90 (417)
+++-+...+.|.+..||+..|++.+... .|.++++++.+.+- -.-.+|.+-|+.+|||...
T Consensus 49 ~~a~~~eid~l~~e~Gyk~~Dvvsv~~~-----~pk~del~akF~~E--H~H~d~EvRy~vaG~GiF~ 109 (181)
T COG1791 49 IDAYETEIDRLIRERGYKNRDVVSVSPS-----NPKLDELRAKFLQE--HLHTDDEVRYFVAGEGIFD 109 (181)
T ss_pred HhhHHHHHHHHHHhhCCceeeEEEeCCC-----CccHHHHHHHHHHH--hccCCceEEEEEecceEEE
Confidence 4455566677777899999898888874 48888888876532 2346889999999999764
No 17
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=55.14 E-value=35 Score=34.33 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHhCCCCCeEEEEE
Q 041177 57 PTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQIPPGCEITVVS 136 (417)
Q Consensus 57 pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~l~~g~~l~iIL 136 (417)
..-++|.++|++++.. +....++.+.+|-|.-.. . ...+|.++++.+..-.++-+.+
T Consensus 118 ~~l~~i~~~Ln~~~~~-~~v~i~~e~~agegs~~g----------~------------~F~~L~eii~~~~~~~~igvCi 174 (280)
T COG0648 118 EGLNRIAEALNELLEE-EGVIILLENTAGEGSGKG----------T------------QFGELAEIIDLIEEKERIGVCI 174 (280)
T ss_pred HHHHHHHHHHHHHhhc-cCCeEEEEEeccccCccc----------c------------chhhHHHHHHhhcccCceEEEE
Confidence 3456777777777764 345677788888776432 1 2246777777777655689999
Q ss_pred eCCCCCcC
Q 041177 137 DSCHSGGL 144 (417)
Q Consensus 137 DcChSG~~ 144 (417)
|.||.=..
T Consensus 175 DtcH~~Aa 182 (280)
T COG0648 175 DTCHAFAA 182 (280)
T ss_pred Echhhhhc
Confidence 99997543
No 18
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=53.19 E-value=38 Score=29.60 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=37.0
Q ss_pred cEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCC
Q 041177 43 NITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTR 89 (417)
Q Consensus 43 dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~ 89 (417)
+|++|.|...+..... ..+++++..+++.+.++|.+-++..|+...
T Consensus 2 ~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~ 47 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVR 47 (155)
T ss_pred eEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEee
Confidence 6899999765543333 888999999999999999999999888643
No 19
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=52.46 E-value=33 Score=33.65 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHH--HHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHhC
Q 041177 54 STQPTGRNIRRA--LGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQI 126 (417)
Q Consensus 54 ~~~pTr~nI~~a--L~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~l 126 (417)
++.|+...+..+ +.++++.+.++|.++|..||=|.-.- =+|.| .|+.+|+.++.+.+
T Consensus 92 HP~Pd~~s~~aa~~il~~~~~~~~~dlvl~LiSGGgSALl--------------~~P~~--gisLed~~~~~~~L 150 (238)
T PF13660_consen 92 HPLPDENSVRAARRILELARELTEDDLVLVLISGGGSALL--------------ELPAD--GISLEDKQELTKLL 150 (238)
T ss_dssp SSS--HHHHHHHHHHHHHHCC--TTSEEEEEE-TTHHHHS----------------B-T--T--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCChHHhh--------------cCCCC--CCCHHHHHHHHHHH
Confidence 467888888765 56788889999999999999775321 23443 57877776665554
No 20
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=52.07 E-value=94 Score=32.86 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=31.3
Q ss_pred ccEEEeecCCCCCCCCcHHHHHHH--HHHHHHhCCCCCEEEEEeeCCCCCC
Q 041177 42 ENITVLIDTDDRSTQPTGRNIRRA--LGNLVRSAEPGDVLFVHYSGHGTRL 90 (417)
Q Consensus 42 ~dI~vL~D~~~~~~~pTr~nI~~a--L~~Lv~~a~pgD~l~fYFSGHG~~~ 90 (417)
++|.++--. ++.|....+..+ +-+++....++|.+++..||-|.-.
T Consensus 79 ~~ieViea~---HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL 126 (422)
T COG2379 79 PRIEVIEAG---HPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGSAL 126 (422)
T ss_pred CceeEEeCC---CCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhh
Confidence 456665543 345665555544 3345678889999999999998754
No 21
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=49.13 E-value=36 Score=35.67 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCC---CCCCCHHHHHHHHHhCCCCCeEE
Q 041177 57 PTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSD---MNLITDDDFREFVDQIPPGCEIT 133 (417)
Q Consensus 57 pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D---~~~Is~~el~~ll~~l~~g~~l~ 133 (417)
.+.+.+.+-|+|..+.. |-+.-.+-+.+||.-...... ....| ++.-+ ...++..||...|+ . ..+-=+
T Consensus 78 ~dp~tL~~fi~~~~~~y-PA~~y~LIlw~HG~Gw~~~~~-~~~rg----~~~D~~~~~~~l~i~el~~aL~-~-~~~~d~ 149 (397)
T PF03415_consen 78 GDPDTLSDFINWAKENY-PADRYGLILWDHGGGWLPASD-SSTRG----IGFDETSGGDYLSIPELAEALE-G-GPKFDF 149 (397)
T ss_dssp TSHHHHHHHHHHHHHHS--ECEEEEEEES-B-TT--TTG-GG-------EEEETTE---EE-HHHHHHHS----TT-EEE
T ss_pred CCHHHHHHHHHHHHHhC-CcccEEEEEEECCCCCCcCCC-CCcce----EecCCCChhhcccHHHHHHHHc-C-CCCCcE
Confidence 45667777788877765 778889999999976522100 00011 12111 12466677777666 1 223456
Q ss_pred EEEeCCCCCcC
Q 041177 134 VVSDSCHSGGL 144 (417)
Q Consensus 134 iILDcChSG~~ 144 (417)
|.||+|.-|++
T Consensus 150 I~FDaClM~~v 160 (397)
T PF03415_consen 150 IGFDACLMGSV 160 (397)
T ss_dssp EEEESTT--BH
T ss_pred EEECcccchhH
Confidence 89999999976
No 22
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=45.37 E-value=79 Score=32.04 Aligned_cols=106 Identities=21% Similarity=0.332 Sum_probs=55.9
Q ss_pred CeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhh---cCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCE
Q 041177 2 TKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDR---YGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDV 78 (417)
Q Consensus 2 ~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~---~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~ 78 (417)
.+.|||||=+-.. -+.-..++..+.+.|... .|. .+ +++.. .=|..++.++|..+++. .+.
T Consensus 147 p~~avLIGG~s~~----~~~~~~~~~~l~~~l~~~~~~~~~---~~-~vttS-----RRTp~~~~~~L~~~~~~---~~~ 210 (311)
T PF06258_consen 147 PRVAVLIGGDSKH----YRWDEEDAERLLDQLAALAAAYGG---SL-LVTTS-----RRTPPEAEAALRELLKD---NPG 210 (311)
T ss_pred CeEEEEECcCCCC----cccCHHHHHHHHHHHHHHHHhCCC---eE-EEEcC-----CCCcHHHHHHHHHhhcC---CCc
Confidence 4789999975211 122255666666666542 332 23 33332 35888899988887653 344
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHhCCCCCeEEEE
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQIPPGCEITVV 135 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~l~~g~~l~iI 135 (417)
+.|| ++.|. +.|-..|.-+|.=.+|.|.+.-+-+.+..|+.|.++
T Consensus 211 ~~~~-~~~~~-----------nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 211 VYIW-DGTGE-----------NPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVL 255 (311)
T ss_pred eEEe-cCCCC-----------CcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEe
Confidence 4444 55441 224444555554444555554444555556555443
No 23
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=42.98 E-value=1.1e+02 Score=32.41 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcC
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGGL 144 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~~ 144 (417)
.++.+++..+++-... ..+++|.|=||+...
T Consensus 207 ~~s~e~l~~ll~~a~~-~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 207 TTTRTELNLLVDFITA-KNIHLISDEIYSGTV 237 (468)
T ss_pred ccCHHHHHHHHHHHHH-CCcEEEEEccccccc
Confidence 4677777777766543 467888888888653
No 24
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.24 E-value=1.1e+02 Score=27.36 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHH-HHHHHHHhCCCCCeEEE
Q 041177 61 NIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDD-DFREFVDQIPPGCEITV 134 (417)
Q Consensus 61 nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~-el~~ll~~l~~g~~l~i 134 (417)
...++|++++++...++.+|+||.|-= |..+|. -+||. ++..+ -|.+.++..|..++++.
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gsk---------d~~tGq--SWCPd---CV~AEPvi~~alk~ap~~~~~v~ 70 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSK---------DDTTGQ--SWCPD---CVAAEPVINEALKHAPEDVHFVH 70 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEeccc---------CCCCCC--cCCch---HHHhhHHHHHHHHhCCCceEEEE
Confidence 356778888888878999999999831 122332 36773 23333 35678888887777643
No 25
>PRK06107 aspartate aminotransferase; Provisional
Probab=38.10 E-value=1.2e+02 Score=30.97 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSG 142 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG 142 (417)
.++.+++..+++-+.....+++|.|.+|+.
T Consensus 182 ~~s~~~~~~l~~~a~~~~~~~iI~De~y~~ 211 (402)
T PRK06107 182 VYSRAELRALADVLLRHPHVLVLTDDIYDH 211 (402)
T ss_pred CcCHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 357778888877665422688999998874
No 26
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=36.47 E-value=3.4e+02 Score=29.41 Aligned_cols=81 Identities=10% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCC--------CCCCHHHHHHHHHhCCCCC
Q 041177 59 GRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDM--------NLITDDDFREFVDQIPPGC 130 (417)
Q Consensus 59 r~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~--------~~Is~~el~~ll~~l~~g~ 130 (417)
.+.|..-|.|..+.. |-|.-.+-+..||.-...... ......-.++--|. ..+...+|..+++.-. .
T Consensus 96 p~tLt~FL~~~~~~y-PAd~Y~LIiwnHG~GW~p~~~--~~~~~~r~i~wDdt~~~~~g~~D~L~~~EI~daL~~~~--k 170 (476)
T TIGR02806 96 AETLKKFIDFCKKNY-EADKYMLIMANHGGGAKDDKD--RAPRLNKAICWDDSNLDKNGEADCLYMGEISDHLTEDE--S 170 (476)
T ss_pred HHHHHHHHHHHHhhC-cccceeEEEEeCCCCCcCCCc--ccccccccceeccCCCCcCccccccchHHHHHHhccCC--c
Confidence 344555566665554 677778888899976542110 00000001111111 1234467777775422 3
Q ss_pred eEEEEEeCCCCCcC
Q 041177 131 EITVVSDSCHSGGL 144 (417)
Q Consensus 131 ~l~iILDcChSG~~ 144 (417)
--+|.||+|+-+++
T Consensus 171 ~D~I~FDAClM~sV 184 (476)
T TIGR02806 171 VDLLAFDACLMGNA 184 (476)
T ss_pred eeEEEEchhcccHH
Confidence 44689999999876
No 27
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=35.84 E-value=30 Score=35.44 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=14.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCC
Q 041177 57 PTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRL 90 (417)
Q Consensus 57 pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~ 90 (417)
+++++|+++|.+ ...++.|.|||...
T Consensus 226 ~~~~~i~~~ln~--------G~~~v~y~GHG~~~ 251 (378)
T PF01364_consen 226 GTRDNIINALNQ--------GAGFVNYFGHGSPT 251 (378)
T ss_dssp --HHHHHHHHHH----------SEEEEES-B-SS
T ss_pred chHHHHHHHHhC--------CCeEEEEecCCchh
Confidence 456677776664 24577888999764
No 28
>PRK06108 aspartate aminotransferase; Provisional
Probab=34.95 E-value=1.3e+02 Score=30.13 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEEeCCCCCcC
Q 041177 114 ITDDDFREFVDQIPPGCEITVVSDSCHSGGL 144 (417)
Q Consensus 114 Is~~el~~ll~~l~~g~~l~iILDcChSG~~ 144 (417)
++.+++.++++-.+. ..+++|.|-+|+.-.
T Consensus 175 ~~~~~~~~l~~~~~~-~~~~li~De~y~~~~ 204 (382)
T PRK06108 175 ASRDDLRAILAHCRR-HGLWIVADEVYERLY 204 (382)
T ss_pred cCHHHHHHHHHHHHH-CCcEEEEehhhhhhc
Confidence 455666666665543 456778887777644
No 29
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=33.82 E-value=81 Score=31.71 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCC-CEEEEEeeCCCC----------C
Q 041177 21 GCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPG-DVLFVHYSGHGT----------R 89 (417)
Q Consensus 21 g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pg-D~l~fYFSGHG~----------~ 89 (417)
|+..+...+++.+.+++|+++++|. +++. +.+.|.-.+..+ .++| |.+++.--+++. .
T Consensus 54 Yp~~~~~~l~~~~a~~~g~~~~~I~-~~~G-------s~e~i~~~~~~~---~~~g~~~vli~~P~y~~y~~~~~~~G~~ 122 (351)
T PRK01688 54 YPECQPKAVIENYAAYAGVKPEQVL-VSRG-------ADEGIELLIRAF---CEPGKDAILYCPPTYGMYSVSAETIGVE 122 (351)
T ss_pred CCCCChHHHHHHHHHHhCCCHHHEE-EcCC-------HHHHHHHHHHHh---cCCCCCEEEEcCCCHHHHHHHHHHcCCE
Confidence 4444567888999988999988865 4542 233333333333 3465 777765333322 1
Q ss_pred CCCCCCCCCCCCCc-----------ceeecCCCC-----CCCHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 041177 90 LPAETGEDDDTGYD-----------ECIVPSDMN-----LITDDDFREFVDQIPPGCEITVVSDSCHSG 142 (417)
Q Consensus 90 ~~d~~G~de~dG~d-----------e~lvP~D~~-----~Is~~el~~ll~~l~~g~~l~iILDcChSG 142 (417)
.....- +++-+.| ..++-+.-+ .++.+++..+++..+. +.++|+|-+|..
T Consensus 123 ~~~v~~-~~~~~~d~~~l~~~~~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~--~~~vivDEay~~ 188 (351)
T PRK01688 123 IRTVPT-LDNWQLDLPAIADNLDGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG--KAIVVADEAYIE 188 (351)
T ss_pred EEEeec-CCCCCCCHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEECchhh
Confidence 100000 0100111 011222221 4778899999988764 456889999853
No 30
>PRK09105 putative aminotransferase; Provisional
Probab=32.38 E-value=1.5e+02 Score=30.18 Aligned_cols=103 Identities=13% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCC----------CCCC---CC
Q 041177 26 VKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGH----------GTRL---PA 92 (417)
Q Consensus 26 a~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGH----------G~~~---~d 92 (417)
...+++.+.+.+|.++++|. ++.. +.+.|...+..+ .++||.+++.-=.| |... +.
T Consensus 80 ~~~Lr~aia~~~~v~~e~I~-it~G-------s~~ai~~~~~~l---~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~ 148 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADHVM-AYAG-------SSEPLNYAVLAF---TSPTAGLVTADPTYEAGWRAADAQGAPVAKVPL 148 (370)
T ss_pred HHHHHHHHHHHhCcChhhEE-EcCC-------hHHHHHHHHHHH---cCCCCEEEEeCCChHHHHHHHHHcCCeEEEecC
Confidence 55677778878899888865 4432 334555555554 35788877632222 2211 10
Q ss_pred C-CCCCCCCCC------cceeecCCC-C----CCCHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 041177 93 E-TGEDDDTGY------DECIVPSDM-N----LITDDDFREFVDQIPPGCEITVVSDSCHS 141 (417)
Q Consensus 93 ~-~G~de~dG~------de~lvP~D~-~----~Is~~el~~ll~~l~~g~~l~iILDcChS 141 (417)
. ++..+.+-+ .-.++.+.- | .++.+++..+++..+ ..+++|+|.+|.
T Consensus 149 ~~~~~~d~~~l~~~~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~--~~~~lIvDEaY~ 207 (370)
T PRK09105 149 RADGAHDVKAMLAADPNAGLIYICNPNNPTGTVTPRADIEWLLANKP--AGSVLLVDEAYI 207 (370)
T ss_pred CCCCCCCHHHHHhcCCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCC--CCcEEEEECchH
Confidence 0 000000000 011221211 1 477888988887644 367889999995
No 31
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=30.87 E-value=66 Score=33.93 Aligned_cols=51 Identities=22% Similarity=0.546 Sum_probs=36.3
Q ss_pred CCCeEEeec-CCCCCcccccCCCCCCcchhhHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCCCCC
Q 041177 334 PDGGILVSG-CQTDQTSADASPSGKASEAYGALSNAIQIIIAES-----DGAVTNRELVLSTRQMLKKQGFTQQ 401 (417)
Q Consensus 334 ~~~~il~SG-C~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~-----~~~~s~~~ll~~~R~~L~~~~y~Q~ 401 (417)
+++.+++|| |+++.. + -+++.-|..+ .+-++..+|.+.+|.+|.+.||.|+
T Consensus 162 ~dg~l~LsGyC~~s~~----------------~-~~Lq~~L~~~gi~yr~~lvc~D~L~~~V~~IL~~~GY~~i 218 (395)
T PRK15367 162 EDGSLQLSGYCSSSEQ----------------M-QKVRATLESWGVMYRDGVICDDLLIREVQDVLIKMGYPHA 218 (395)
T ss_pred CCCcEEEEEEECChHH----------------H-HHHHHHHHhcCceeeecceeHHHHHHHHHHHHHHcCcCce
Confidence 788999999 544322 2 2333344443 3457889999999999999999986
No 32
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=30.66 E-value=1.1e+02 Score=27.66 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHhhcC----CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEE
Q 041177 21 GCVNDVKRMYACLVDRYG----FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFV 81 (417)
Q Consensus 21 g~~nDa~~m~~~L~~~~G----f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~f 81 (417)
|-..=-++++++|.+++| +++++|++... ....|...+.-| +.|||.+++
T Consensus 93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~G--------a~~al~~l~~~l---~dpGD~VlV 146 (153)
T PLN02994 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAG--------ATAANEIIMFCI---ADPGDAFLV 146 (153)
T ss_pred CcHHHHHHHHHHHHHHhCCCCccchhheEEcCC--------HHHHHHHHHHHH---cCCCCEEEE
Confidence 444445678889987777 45666544433 222233333333 458998876
No 33
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=30.52 E-value=86 Score=31.83 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=9.3
Q ss_pred CcchHHHHHHHHHHHHhhcCCC
Q 041177 19 LKGCVNDVKRMYACLVDRYGFS 40 (417)
Q Consensus 19 L~g~~nDa~~m~~~L~~~~Gf~ 40 (417)
+.+.-.+-.++.+.|.+..+.+
T Consensus 82 ~~~~n~er~~~~~~ll~~l~i~ 103 (297)
T PF06342_consen 82 QQYTNEERQNFVNALLDELGIK 103 (297)
T ss_pred cccChHHHHHHHHHHHHHcCCC
Confidence 4444444444444444444444
No 34
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=30.48 E-value=2.1e+02 Score=28.80 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGG 143 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~ 143 (417)
.++.+++.++++-... ..+++|.|.+|+.-
T Consensus 180 ~~~~~~~~~i~~~a~~-~~~~ii~De~y~~l 209 (383)
T TIGR03540 180 VAPLKFFKELVEFAKE-YNIIVCHDNAYSEI 209 (383)
T ss_pred cCCHHHHHHHHHHHHH-cCEEEEEecchhhh
Confidence 4677788888777654 46889999999853
No 35
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.91 E-value=2e+02 Score=30.01 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcCCcc
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGGLIDE 147 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~~~d~ 147 (417)
.++.++|+.+++-... ..+++|.|-||++-.-+.
T Consensus 179 v~~~~~l~~i~~~a~~-~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 179 VYSKEELKAIVELARE-HDIIIISDEIYEELVYDG 212 (393)
T ss_pred CCCHHHHHHHHHHHHH-cCeEEEEehhhhhcccCC
Confidence 3677888888877764 789999999999977665
No 36
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=28.50 E-value=41 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.727 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCCeEEE
Q 041177 117 DDFREFVDQIPPGCEITV 134 (417)
Q Consensus 117 ~el~~ll~~l~~g~~l~i 134 (417)
++|..|++.+.+ .++++
T Consensus 21 ~~L~~~i~~~~p-~~vil 37 (43)
T PF07521_consen 21 EELLEFIEQLNP-RKVIL 37 (43)
T ss_dssp HHHHHHHHHHCS-SEEEE
T ss_pred HHHHHHHHhcCC-CEEEE
Confidence 478888888865 45544
No 37
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=27.94 E-value=2.3e+02 Score=27.27 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEEeCCCCCcCC
Q 041177 114 ITDDDFREFVDQIPPGCEITVVSDSCHSGGLI 145 (417)
Q Consensus 114 Is~~el~~ll~~l~~g~~l~iILDcChSG~~~ 145 (417)
++.+++.++++-... ..+.+|+|++|++...
T Consensus 149 ~~~~~l~~l~~~~~~-~~~~~ivD~a~~~~~~ 179 (350)
T cd00609 149 LSEEELEELAELAKK-HGILIISDEAYAELVY 179 (350)
T ss_pred cCHHHHHHHHHHHHh-CCeEEEEecchhhcee
Confidence 455677766555443 5678999999987553
No 38
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=27.42 E-value=3.7e+02 Score=28.86 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcC----CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCCCCCC
Q 041177 26 VKRMYACLVDRYG----FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTG 101 (417)
Q Consensus 26 a~~m~~~L~~~~G----f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~de~dG 101 (417)
-++|++++....| |++++|++... +|.+| +.+.-.+ +.|||.+++=+-=.|..+.+.- -.+|
T Consensus 127 rqa~A~Fm~~~r~~~v~fdP~~~Vv~~G-------~T~an--e~l~fcL--adpgdafLvPtPyY~gfdrdl~---~rTg 192 (471)
T KOG0256|consen 127 RQAVAEFMERARGNRVKFDPERVVVTNG-------ATSAN--ETLMFCL--ADPGDAFLVPTPYYPGFDRDLR---WRTG 192 (471)
T ss_pred HHHHHHHHHHHhCCCCccCccceEEecc-------cchhh--HHHHHHh--cCCCceeeecCCCCCcccccce---eccC
Confidence 3567788876443 88989766554 45543 3333344 4499999983333333333321 1234
Q ss_pred CcceeecC--CCC--------------------------------------CCCHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 041177 102 YDECIVPS--DMN--------------------------------------LITDDDFREFVDQIPPGCEITVVSDSCHS 141 (417)
Q Consensus 102 ~de~lvP~--D~~--------------------------------------~Is~~el~~ll~~l~~g~~l~iILDcChS 141 (417)
++ |+|+ +-+ .++-++|..+++=... .++-+|.|=-|+
T Consensus 193 ve--ivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~-kniHvI~DEIya 269 (471)
T KOG0256|consen 193 VE--IVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASR-KNIHVISDEIYA 269 (471)
T ss_pred ce--EEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhh-cceEEEeehhhc
Confidence 43 3332 211 1345666666665553 677788888888
Q ss_pred CcCCccc
Q 041177 142 GGLIDEA 148 (417)
Q Consensus 142 G~~~d~~ 148 (417)
|++.+.+
T Consensus 270 ~sVF~~~ 276 (471)
T KOG0256|consen 270 GSVFDKS 276 (471)
T ss_pred ccccCcc
Confidence 8877654
No 39
>PRK05942 aspartate aminotransferase; Provisional
Probab=26.85 E-value=2.7e+02 Score=28.34 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSG 142 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG 142 (417)
.++.+++.++++-... ..+++|.|-+|..
T Consensus 186 ~~s~~~~~~i~~~a~~-~~~~iI~De~y~~ 214 (394)
T PRK05942 186 TAPREFFEEIVAFARK-YEIMLVHDLCYAE 214 (394)
T ss_pred cCCHHHHHHHHHHHHH-cCeEEEEeccchh
Confidence 3566667666655543 4677788887764
No 40
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=25.90 E-value=3.2e+02 Score=26.76 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=44.1
Q ss_pred EEEEeeCCCCC-CCCCcchHHHHHHHHHHHHhh---cCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHH
Q 041177 5 AVLIGINYPGT-KAELKGCVNDVKRMYACLVDR---YGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVR 71 (417)
Q Consensus 5 ALlIGINY~~~-~~~L~g~~nDa~~m~~~L~~~---~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~ 71 (417)
+.+|-|||.-. ......++.|+.+...+|.++ +|+++++|.+.-|. -..++-..+....+
T Consensus 111 ~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdS-------AGG~La~~~a~~~~ 174 (312)
T COG0657 111 AVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDS-------AGGHLALALALAAR 174 (312)
T ss_pred CEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecC-------cccHHHHHHHHHHH
Confidence 56788898753 457889999999999999975 68999999888874 23455555554443
No 41
>PLN02368 alanine transaminase
Probab=25.53 E-value=2.4e+02 Score=29.49 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcC--CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEE
Q 041177 27 KRMYACLVDRYG--FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVH 82 (417)
Q Consensus 27 ~~m~~~L~~~~G--f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fY 82 (417)
+++++++.+++| +++++|. ++.. +.+.|..++..++. .|||.+++.
T Consensus 114 ~aia~~~~~~~g~~~~~~~I~-it~G-------a~~al~~~~~~l~~--~pGd~Vli~ 161 (407)
T PLN02368 114 KEVAEFIERRDGYPSDPELIF-LTDG-------ASKGVMQILNAVIR--GEKDGVLVP 161 (407)
T ss_pred HHHHHHHHHhcCCCCChhhEE-Eccc-------HHHHHHHHHHHHcC--CCCCEEEEe
Confidence 456677766667 4566654 4442 34455555555542 478987764
No 42
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=25.40 E-value=2.1e+02 Score=29.76 Aligned_cols=59 Identities=19% Similarity=0.407 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCCccEE-EeecCCCCCCCCcHHHHHHHHHHHHHh-----CC-CCCEEEEEeeCCCCCCCC
Q 041177 27 KRMYACLVDRYGFSEENIT-VLIDTDDRSTQPTGRNIRRALGNLVRS-----AE-PGDVLFVHYSGHGTRLPA 92 (417)
Q Consensus 27 ~~m~~~L~~~~Gf~~~dI~-vL~D~~~~~~~pTr~nI~~aL~~Lv~~-----a~-pgD~l~fYFSGHG~~~~d 92 (417)
+.+.+.+++ -|+.. +|. -++|. .||++-++++|.+++++ .. ..|-++++||-||....-
T Consensus 176 n~l~r~~r~-~~~~~-~~~wsiIdr-----W~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~ 241 (395)
T KOG1321|consen 176 NELWRQFRE-DGYER-DIKWSIIDR-----WPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSV 241 (395)
T ss_pred HHHHHHHHh-cCccc-CCceEeecc-----ccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHH
Confidence 345555553 35543 332 34453 78988888888776653 12 247788999999987654
No 43
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=25.15 E-value=30 Score=30.88 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCC----CCCCCCCCCCCCCCccC
Q 041177 368 AIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQ----QPGLYCHDNHVDKPFIC 417 (417)
Q Consensus 368 a~~~~l~~~~~~~s~~~ll~~~R~~L~~~~y~Q----~PqL~~s~~~~~~~fi~ 417 (417)
....+|.++..+++|.+|++.+-+.+.. .+.+ ++|||. +-+.+..|||
T Consensus 8 vAy~iL~~~~~~m~f~dL~~ev~~~~~~-s~e~~~~~iaq~Yt-dLn~DGRFi~ 59 (129)
T PRK02363 8 VAYEILKEKKEPMSFYDLVNEIQKYLGK-SDEEIRERIAQFYT-DLNLDGRFIS 59 (129)
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-HHhccCCeeE
Confidence 3445777888899999999999887753 4433 466664 3366667765
No 44
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=25.07 E-value=1.7e+02 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCC
Q 041177 56 QPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRL 90 (417)
Q Consensus 56 ~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~ 90 (417)
.|+.+-|..+|..|++.- -+|+.|+|+..
T Consensus 48 ~Ps~e~l~~~L~~Li~er------kIY~tg~GYfi 76 (80)
T PF10264_consen 48 IPSQEVLYNTLGTLIKER------KIYHTGEGYFI 76 (80)
T ss_pred CCCHHHHHHHHHHHHHcC------ceeeCCCceEe
Confidence 388999999999998763 58999999754
No 45
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=24.87 E-value=3.6e+02 Score=26.62 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCC-CCCCCCCCCCCCCcc
Q 041177 26 VKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTR-LPAETGEDDDTGYDE 104 (417)
Q Consensus 26 a~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~-~~d~~G~de~dG~de 104 (417)
.+.+++.|.+.+|.+++++.+++.. +.+.+..++..+ .++||.+++...+|-.. .... -+..|..-
T Consensus 34 ~~~~~~~la~~~g~~~~~~~~~~~~-------~t~al~~~~~~~---~~~g~~vl~~~~~~~~~~~~~~---~~~~g~~~ 100 (356)
T cd06451 34 MDEILEGLRYVFQTENGLTFLLSGS-------GTGAMEAALSNL---LEPGDKVLVGVNGVFGDRWADM---AERYGADV 100 (356)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecC-------cHHHHHHHHHHh---CCCCCEEEEecCCchhHHHHHH---HHHhCCCe
Confidence 5577778887788866666666653 234566666655 35899988866565431 0000 01123333
Q ss_pred eeecCCCC-CCCHHHHHHHHHhCCCCCeEEEEEe
Q 041177 105 CIVPSDMN-LITDDDFREFVDQIPPGCEITVVSD 137 (417)
Q Consensus 105 ~lvP~D~~-~Is~~el~~ll~~l~~g~~l~iILD 137 (417)
..+|.|.. .+..+++.+.+.+- ..++++|..
T Consensus 101 ~~v~~~~~~~~~~~~l~~~i~~~--~~~~v~i~~ 132 (356)
T cd06451 101 DVVEKPWGEAVSPEEIAEALEQH--DIKAVTLTH 132 (356)
T ss_pred EEeecCCCCCCCHHHHHHHHhcc--CCCEEEEec
Confidence 45665533 35566666666531 234544433
No 46
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=24.73 E-value=2.5e+02 Score=29.64 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHHHhhcC----CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEE
Q 041177 20 KGCVNDVKRMYACLVDRYG----FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFV 81 (417)
Q Consensus 20 ~g~~nDa~~m~~~L~~~~G----f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~f 81 (417)
.|-..=-++++++|.+++| +++++|.+ +.. .| ..+..+-+.+ +.|||.+++
T Consensus 95 ~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivi-t~G------~t--~al~~l~~~l--~~pGD~Vlv 149 (447)
T PLN02607 95 HGLKSFRQAMASFMEQIRGGKARFDPDRIVL-TAG------AT--AANELLTFIL--ADPGDALLV 149 (447)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCcCHHHeEE-cCC------hH--HHHHHHHHHh--CCCCCEEEE
Confidence 4444444678888877655 67777654 442 22 3344444444 468998886
No 47
>PRK08636 aspartate aminotransferase; Provisional
Probab=24.59 E-value=2.9e+02 Score=28.21 Aligned_cols=30 Identities=10% Similarity=0.095 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGG 143 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~ 143 (417)
.++.++++++++-... .++++|.|-.|+.-
T Consensus 191 ~~s~~~~~~l~~~a~~-~~~~II~De~Y~~l 220 (403)
T PRK08636 191 TVEKSFYERLVALAKK-ERFYIISDIAYADI 220 (403)
T ss_pred cCCHHHHHHHHHHHHH-cCcEEEEeccchhh
Confidence 5788888888876653 57888999888754
No 48
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=24.56 E-value=76 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041177 365 LSNAIQIIIAESDGAVTNRELVLSTRQ 391 (417)
Q Consensus 365 ~s~a~~~~l~~~~~~~s~~~ll~~~R~ 391 (417)
|--+...||++...++++.||...+-+
T Consensus 3 ~~eaa~~vL~~~~~pm~~~eI~~~i~~ 29 (72)
T PF05066_consen 3 FKEAAYEVLEEAGRPMTFKEIWEEIQE 29 (72)
T ss_dssp HHHHHHHHHHHH-S-EEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 567888999998899999999998876
No 49
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=23.97 E-value=1.5e+02 Score=27.65 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCC--CCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHhCCCCCeEEE
Q 041177 59 GRNIRRALGNLVRSAEP--GDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQIPPGCEITV 134 (417)
Q Consensus 59 r~nI~~aL~~Lv~~a~p--gD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~l~~g~~l~i 134 (417)
+.++.+++++..+.+.. -|.|++ ||.+...++..|+.+++.++|+.-|....+++
T Consensus 78 ~~~~~~~~~~a~~~i~~~~~dlvIL---------------------DEi~~a~~~gll~~~~v~~~l~~rp~~~evVl 134 (172)
T PF02572_consen 78 RAAAREGLEEAKEAISSGEYDLVIL---------------------DEINYAVDYGLLSEEEVLDLLENRPESLEVVL 134 (172)
T ss_dssp HHHHHHHHHHHHHHTT-TT-SEEEE---------------------ETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEE---------------------cchHHHhHCCCccHHHHHHHHHcCCCCeEEEE
Confidence 56777777776666543 355553 56677888889999999999999887666543
No 50
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=23.97 E-value=2.1e+02 Score=22.39 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCC-CEEEEEe
Q 041177 24 NDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPG-DVLFVHY 83 (417)
Q Consensus 24 nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pg-D~l~fYF 83 (417)
+....+++.|.+ +|...+.-+.+.+ .|..++...++.|-+-..|+ |.+++|-
T Consensus 14 k~~~kv~k~L~~-~g~~iQ~SVf~~~-------~~~~~~~~l~~~l~~~i~~~~d~i~i~~ 66 (78)
T PF09827_consen 14 KRRNKVRKILKS-YGTRIQYSVFEGN-------LTNAELRKLRRELEKLIDPDEDSIRIYP 66 (78)
T ss_dssp HHHHHHHHHHHH-TTEEEETTEEEEE-------E-HHHHHHHHHHHHHHSCTTTCEEEEEE
T ss_pred HHHHHHHHHHHH-hCccccceEEEEE-------cCHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 567889999985 6744332223333 34445554444555555566 8888774
No 51
>PRK05764 aspartate aminotransferase; Provisional
Probab=23.87 E-value=2.4e+02 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 041177 114 ITDDDFREFVDQIPPGCEITVVSDSCHSGG 143 (417)
Q Consensus 114 Is~~el~~ll~~l~~g~~l~iILDcChSG~ 143 (417)
++.++++++++-.+. ..+++|.|.||..-
T Consensus 181 ~~~~~~~~l~~~a~~-~~~~ii~De~y~~~ 209 (393)
T PRK05764 181 YSPEELEAIADVAVE-HDIWVLSDEIYEKL 209 (393)
T ss_pred cCHHHHHHHHHHHHH-CCcEEEEeccccce
Confidence 456677777766553 45788899998753
No 52
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=23.78 E-value=2.3e+02 Score=28.00 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEe----------eCCCCCCCCCCCC
Q 041177 27 KRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHY----------SGHGTRLPAETGE 96 (417)
Q Consensus 27 ~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYF----------SGHG~~~~d~~G~ 96 (417)
..+++.+.+.++.++++|. ++.. +.+.|.-.+..+ .+|||.+++-= .-+|.......-
T Consensus 63 ~~lr~aia~~~~~~~~~I~-it~G-------~~~al~~~~~~l---~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~- 130 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQVF-VGNG-------SDEVLAHAFLAF---FNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPL- 130 (353)
T ss_pred HHHHHHHHHHhCCCHHHEE-EcCC-------HHHHHHHHHHHh---cCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeec-
Confidence 5677777777888887764 4432 334444444444 45899877531 123432111000
Q ss_pred CCCCCCc---------ceeecCCCC----CCCHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 041177 97 DDDTGYD---------ECIVPSDMN----LITDDDFREFVDQIPPGCEITVVSDSCHSG 142 (417)
Q Consensus 97 de~dG~d---------e~lvP~D~~----~Is~~el~~ll~~l~~g~~l~iILDcChSG 142 (417)
++..++| -.+++.=.| .++.+++..+++..+ .+++|.|-+|+.
T Consensus 131 ~~~~~~d~~~l~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~---~~~livDe~y~~ 186 (353)
T PRK05387 131 DDDFSIDVEDYLRPNGGIIFPNPNAPTGIALPLAEIERILAANP---DSVVVIDEAYVD 186 (353)
T ss_pred CCCCCCCHHHHHhcCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC---CcEEEEeCcccc
Confidence 1110111 122222122 467888999887543 678999999963
No 53
>PRK08960 hypothetical protein; Provisional
Probab=22.93 E-value=3.2e+02 Score=27.63 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSG 142 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG 142 (417)
.++.+++..+++-... ..+++|+|-+|..
T Consensus 181 ~~~~~~~~~l~~~~~~-~~~~li~De~Y~~ 209 (387)
T PRK08960 181 LLSRDELAALSQALRA-RGGHLVVDEIYHG 209 (387)
T ss_pred CcCHHHHHHHHHHHHH-cCCEEEEEccccc
Confidence 3566777777665543 3567888888765
No 54
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=21.93 E-value=1.6e+02 Score=30.70 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=15.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCC
Q 041177 56 QPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGT 88 (417)
Q Consensus 56 ~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~ 88 (417)
.||.+.+.++|. ..| +|.|.|||.
T Consensus 296 ~P~~~e~~~~l~-------~~d--lf~Y~GHG~ 319 (383)
T PF03568_consen 296 APTEEEFLQALT-------SSD--LFLYCGHGS 319 (383)
T ss_pred CCCHHHHHHHHH-------hCC--eEEEecCCc
Confidence 367777666653 234 566889996
No 55
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=21.79 E-value=2.7e+02 Score=27.94 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGG 143 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~ 143 (417)
.++.+++..+++-.+. ..+++|.|.+|+.-
T Consensus 158 ~~~~~~~~~i~~~a~~-~~~~ii~De~y~~~ 187 (356)
T PRK08056 158 LPERQLLQAIAERCKS-LNIALILDEAFIDF 187 (356)
T ss_pred CCCHHHHHHHHHHHHh-cCCEEEEecchhcc
Confidence 3566677777766653 46788999998753
No 56
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=21.76 E-value=6.1e+02 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCC
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHS 141 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChS 141 (417)
.++.+++.++++-... .++++|.|-+|+
T Consensus 195 ~~s~~~~~~l~~~a~~-~~~~iI~De~Y~ 222 (416)
T PRK09440 195 VLTDEELEKLDALARQ-HNIPLLIDNAYG 222 (416)
T ss_pred cCCHHHHHHHHHHHHH-cCCcEEEeCCcc
Confidence 4788888888876653 577899999996
No 57
>PRK03321 putative aminotransferase; Provisional
Probab=21.43 E-value=6.4e+02 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcC
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGGL 144 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~~ 144 (417)
.++.+++.++++..+ ..+++|.|.+|..-.
T Consensus 161 ~~~~~~l~~l~~~~~--~~~~ii~De~y~~~~ 190 (352)
T PRK03321 161 VVTPAELARFLDAVP--ADVLVVLDEAYVEYV 190 (352)
T ss_pred CcCHHHHHHHHHhCC--CCeEEEEechHHHhc
Confidence 467788888888753 368899999987544
No 58
>PRK06207 aspartate aminotransferase; Provisional
Probab=21.09 E-value=3.3e+02 Score=27.99 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGG 143 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~ 143 (417)
.++.+++.++++-.+. ..+++|.|-+|+.-
T Consensus 194 ~~s~e~l~~l~~~a~~-~~~~iI~De~Y~~~ 223 (405)
T PRK06207 194 VYSAEEIAQIAALARR-YGATVIVDQLYSRL 223 (405)
T ss_pred CCCHHHHHHHHHHHHH-cCCEEEEecccccc
Confidence 4677788887776653 46788999988864
No 59
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.77 E-value=1.1e+02 Score=23.15 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CCCCCCCC
Q 041177 380 VTNRELVLSTRQMLKKQGFT-QQPGLYCH 407 (417)
Q Consensus 380 ~s~~~ll~~~R~~L~~~~y~-Q~PqL~~s 407 (417)
++| =...++.+|++.||+ |+|.-...
T Consensus 20 v~y--s~~~v~~lL~r~G~s~~kp~~~~~ 46 (60)
T PF13592_consen 20 VKY--SPSGVYRLLKRLGFSYQKPRPRPP 46 (60)
T ss_pred CEE--cHHHHHHHHHHcCCccccCCCCcc
Confidence 455 456889999999998 99987744
No 60
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=20.57 E-value=4.7e+02 Score=26.28 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCC
Q 041177 20 KGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTR 89 (417)
Q Consensus 20 ~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~ 89 (417)
.|...-.+++++.|.+.+|.+.+++.++.. .+. ....++..+.....++|.+++.=..||..
T Consensus 60 ~g~~~~~~~~~~~la~~~g~~~~~v~~~~~-------g~~-~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~ 121 (398)
T cd00613 60 QGRLQALFELQTMLCELTGMDVANASLQDE-------ATA-AAEAAGLAAIRAYHKRNKVLVPDSAHPTN 121 (398)
T ss_pred hhHHHHHHHHHHHHHHHHCCCccceeccCc-------hHH-HHHHHHHHHHhcccCCCEEEEcCccCcch
Confidence 444555678888888888887656654443 222 33334333333323599999988888865
No 61
>PRK07324 transaminase; Validated
Probab=20.42 E-value=2.5e+02 Score=28.54 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 041177 114 ITDDDFREFVDQIPPGCEITVVSDSCHSG 142 (417)
Q Consensus 114 Is~~el~~ll~~l~~g~~l~iILDcChSG 142 (417)
++.+++..+++-... ..+++|.|-+|++
T Consensus 170 ~~~~~l~~i~~~a~~-~~~~ii~De~y~~ 197 (373)
T PRK07324 170 MDRAYLEEIVEIARS-VDAYVLSDEVYRP 197 (373)
T ss_pred CCHHHHHHHHHHHHH-CCCEEEEEccccc
Confidence 565666666655432 4567788887765
Done!