Query 041177
Match_columns 417
No_of_seqs 294 out of 1252
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f6o_A Metacaspase-1; rossmann 100.0 8.8E-67 3E-71 524.6 19.6 293 1-417 52-350 (350)
2 4af8_A Metacaspase MCA2; hydro 100.0 1.3E-56 4.5E-61 452.9 23.3 254 1-417 91-356 (367)
3 3bij_A Uncharacterized protein 100.0 1.9E-44 6.5E-49 353.2 20.1 262 1-416 2-270 (285)
4 3uoa_B Mucosa-associated lymph 99.9 2.6E-23 8.9E-28 211.6 19.6 121 1-143 4-131 (390)
5 2h54_A Caspase-1; allosteric s 99.4 2.2E-12 7.4E-17 118.5 14.5 118 2-144 43-171 (178)
6 1nw9_B Caspase 9, apoptosis-re 99.4 3.7E-11 1.3E-15 116.9 19.5 125 2-144 21-153 (277)
7 1f1j_A Caspase-7 protease; cas 99.4 1.8E-11 6E-16 121.1 17.1 117 2-144 69-193 (305)
8 2j32_A Caspase-3; Pro-caspase3 99.3 9.8E-12 3.4E-16 119.5 14.2 116 2-143 16-139 (250)
9 1m72_A Caspase-1; caspase, cys 99.3 2.5E-11 8.4E-16 118.2 16.5 116 2-143 32-154 (272)
10 2nn3_C Caspase-1; cysteine pro 99.3 4.3E-11 1.5E-15 118.6 15.6 117 2-144 60-183 (310)
11 4ehd_A Caspase-3; caspase, apo 99.3 1.2E-10 4.2E-15 113.6 17.0 115 2-142 44-166 (277)
12 3sir_A Caspase; hydrolase; 2.6 99.2 2.6E-11 8.9E-16 117.2 11.0 116 2-143 20-142 (259)
13 3od5_A Caspase-6; caspase doma 99.2 4.3E-10 1.5E-14 109.7 17.5 116 2-143 21-144 (278)
14 3h11_B Caspase-8; cell death, 99.2 7.7E-10 2.6E-14 107.6 17.2 118 2-144 17-149 (271)
15 3e4c_A Caspase-1; zymogen, inf 99.1 1.7E-10 5.8E-15 113.9 10.5 118 2-144 60-188 (302)
16 2fp3_A Caspase NC; apoptosis, 99.1 3.6E-10 1.2E-14 112.2 9.8 122 2-144 61-189 (316)
17 1pyo_A Caspase-2; apoptosis, c 98.7 8.7E-08 3E-12 87.0 12.0 118 2-144 33-159 (167)
18 2dko_A Caspase-3; low barrier 98.5 4.4E-07 1.5E-11 80.6 11.0 117 2-144 16-140 (146)
19 1qtn_A Caspase-8; apoptosis, d 98.5 3.7E-07 1.3E-11 82.5 10.5 118 2-144 23-155 (164)
20 2ql9_A Caspase-7; cysteine pro 98.2 7E-06 2.4E-10 74.9 10.3 116 3-144 45-168 (173)
21 3p45_A Caspase-6; protease, hu 98.2 7.2E-06 2.4E-10 75.2 10.4 117 2-144 44-168 (179)
22 3h11_A CAsp8 and FADD-like apo 97.6 3.7E-05 1.3E-09 74.7 5.0 93 24-141 54-154 (272)
23 2dko_B Caspase-3; low barrier 57.2 7.3 0.00025 31.8 3.2 68 334-407 16-94 (103)
24 3euc_A Histidinol-phosphate am 56.8 56 0.0019 30.6 9.9 51 27-88 70-121 (367)
25 2ql9_B Caspase-7; cysteine pro 56.5 7.7 0.00026 31.2 3.2 44 364-407 34-88 (97)
26 2xzd_B Caspase-3; hydrolase-pr 54.7 18 0.0006 30.4 5.2 68 334-407 15-93 (118)
27 3e4c_A Caspase-1; zymogen, inf 48.7 30 0.001 33.4 6.6 68 334-407 222-291 (302)
28 1sc3_B Interleukin-1 beta conv 48.6 31 0.0011 27.2 5.5 66 334-405 8-74 (88)
29 1qtn_B Caspase-8; apoptosis, d 46.3 12 0.00042 30.0 2.8 43 365-407 37-85 (95)
30 1u08_A Hypothetical aminotrans 40.9 80 0.0027 29.8 8.2 57 21-88 68-127 (386)
31 2fp3_A Caspase NC; apoptosis, 39.5 35 0.0012 33.2 5.4 67 334-407 230-300 (316)
32 1pyo_B Caspase-2; apoptosis, c 39.3 28 0.00096 28.3 4.0 44 364-407 38-91 (105)
33 3ffh_A Histidinol-phosphate am 39.2 34 0.0012 32.1 5.2 105 25-142 68-198 (363)
34 3dzz_A Putative pyridoxal 5'-p 34.5 31 0.001 32.6 4.0 53 24-87 66-120 (391)
35 1v2d_A Glutamine aminotransfer 34.3 60 0.002 30.7 6.1 51 27-88 64-114 (381)
36 2o1b_A Aminotransferase, class 31.0 1.4E+02 0.0048 28.6 8.2 31 113-144 197-227 (404)
37 3ly1_A Putative histidinol-pho 29.7 2.3E+02 0.0077 26.1 9.2 57 21-88 48-104 (354)
38 1x3l_A Hypothetical protein PH 29.7 86 0.0029 32.1 6.5 36 54-89 98-135 (440)
39 1c7n_A Cystalysin; transferase 27.5 75 0.0026 30.1 5.5 49 27-86 73-123 (399)
40 1cvr_A Gingipain R, RGPB; casp 27.1 1.3E+02 0.0044 30.5 7.4 73 2-90 142-215 (435)
41 2r2n_A Kynurenine/alpha-aminoa 26.9 99 0.0034 29.9 6.3 103 26-142 84-203 (425)
42 3h14_A Aminotransferase, class 26.4 76 0.0026 30.0 5.3 30 114-144 178-207 (391)
43 2zc0_A Alanine glyoxylate tran 25.9 1.1E+02 0.0037 29.0 6.3 51 26-87 81-133 (407)
44 1vp4_A Aminotransferase, putat 25.5 82 0.0028 30.4 5.4 53 24-87 89-144 (425)
45 3op7_A Aminotransferase class 25.1 74 0.0025 29.8 4.9 50 27-87 66-116 (375)
46 3rjm_B Caspase-2; caspase-2, c 25.0 64 0.0022 26.8 3.9 44 364-407 39-92 (117)
47 3f9t_A TDC, L-tyrosine decarbo 24.1 1.8E+02 0.0062 26.8 7.5 87 27-125 72-169 (397)
48 3aow_A Putative uncharacterize 23.7 1.2E+02 0.004 29.9 6.3 50 26-86 124-174 (448)
49 1oey_A P67-PHOX, neutrophil cy 22.9 40 0.0014 26.7 2.1 32 377-410 21-52 (83)
50 2hd9_A UPF0310 protein PH1033; 21.7 51 0.0017 28.4 2.7 18 69-86 31-48 (145)
51 2zyj_A Alpha-aminodipate amino 21.4 1E+02 0.0035 29.2 5.1 48 29-87 79-126 (397)
52 2b8n_A Glycerate kinase, putat 20.6 91 0.0031 31.8 4.7 45 42-89 93-139 (429)
No 1
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-67 Score=524.58 Aligned_cols=293 Identities=31% Similarity=0.513 Sum_probs=194.8
Q ss_pred CCeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCC-CCCCcHHHHHHHHHHHHHhCCCCCEE
Q 041177 1 MTKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDR-STQPTGRNIRRALGNLVRSAEPGDVL 79 (417)
Q Consensus 1 g~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~-~~~pTr~nI~~aL~~Lv~~a~pgD~l 79 (417)
|+|+|||||||||+...+|++|+|||++|+++|++++||++++|++|+|.... ...||++||+++|+||+++++|+|++
T Consensus 52 grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~pgD~l 131 (350)
T 4f6o_A 52 GRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSL 131 (350)
T ss_dssp SCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 68999999999998888999999999999999999899999999999996421 23599999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcceeecCCCC---CCCHHHHHHHH-HhCCCCCeEEEEEeCCCCCcCCccchhhcCCC
Q 041177 80 FVHYSGHGTRLPAETGEDDDTGYDECIVPSDMN---LITDDDFREFV-DQIPPGCEITVVSDSCHSGGLIDEAKEQIGES 155 (417)
Q Consensus 80 ~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~---~Is~~el~~ll-~~l~~g~~l~iILDcChSG~~~d~~~~~ig~s 155 (417)
||||||||.++++.+| +|.+||||+|||+|++ .|+++||..+| +.++++++|++||||||||+++|+|+.. +
T Consensus 132 lfYFSGHG~q~~d~~g-dE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~~---~ 207 (350)
T 4f6o_A 132 FLHYSGHGGQTEDLDG-DEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTY---S 207 (350)
T ss_dssp EEEEESCEEEC------------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEEE---E
T ss_pred EEEEcCCceeccCCCC-CcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCccccccccc---c
Confidence 9999999999999888 7899999999999985 79999998865 5788899999999999999999999873 2
Q ss_pred cccchhhhcCCCCchhHHHHHHHHHHHHhcCccCCCCCcCCCCCCCCccchhhhhccCCCCCcccCCCCChhHHHHHHHH
Q 041177 156 TRRDEEEESGSGFNFKSFLHKKVENAFESRGIHIPSGLRHHRPSGDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEILKQ 235 (417)
Q Consensus 156 t~~~~e~e~~g~g~FT~~L~~~L~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lp~~~~~~~l~~ 235 (417)
+.+. +++++++.+.....|
T Consensus 208 ~~g~-----------------------------------------------------------~~e~~~~~~~~~~~l-- 226 (350)
T 4f6o_A 208 TKGI-----------------------------------------------------------IKEPNIWKDVGQDGL-- 226 (350)
T ss_dssp TTEE-----------------------------------------------------------EECCCC-----------
T ss_pred cccc-----------------------------------------------------------cCcchhhhhcccccc--
Confidence 2211 122221111000000
Q ss_pred hhCCCCcccCccccchhhhccCCcchHHHHHHHHHHHhhhcCCCCCCCCCccchhhhhHHHHHhhhcccCccccccccch
Q 041177 236 QTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQGDGESGGGGFLGMVGSLAQEFLKHKLEESDESYAKPALE 315 (417)
Q Consensus 236 ~~g~~~~~~~~i~~~l~~~fg~~as~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (417)
+. ++ .+.. |.+.|+++++.. +.|....+...
T Consensus 227 -----------------~~-----------~~-----~~~~-------g~~~~~~~~~~~-~~~~~~~~~~~-------- 257 (350)
T 4f6o_A 227 -----------------QA-----------AI-----SYAT-------GNRAALIGSLGS-IFKTVKGGMGN-------- 257 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------ch-----------hh-----hhcc-------ccchhhcccchh-hhhhhcccccc--------
Confidence 00 00 0111 112222222211 11111110000
Q ss_pred hccccccccccCCCCCCCCCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 041177 316 TEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKK 395 (417)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~ 395 (417)
.....+.++.+++ |+++||||||+|+|||||+.++| +++|||||||+++|+++|+ +||.+||++||+.|++
T Consensus 258 ----~~~~~~~~~~~~~-~~~vi~~SgCkD~QtSaD~~~~g---~~~GAmTyafi~aL~~~p~-~tY~~Ll~~~r~~L~~ 328 (350)
T 4f6o_A 258 ----NVDRERVRQIKFS-AADVVMLSGSKDNQTSADAVEDG---QNTGAMSHAFIKVMTLQPQ-QSYLSLLQNMRKELAG 328 (350)
T ss_dssp ---------------CC-CSEEEEEEEEC----------------CCCHHHHHHHHHHHHCCC-CBHHHHHHHHHHHHTT
T ss_pred ----ccchhhhhhccCC-CCCEEEEEecCCCCchhhhccCC---ceeehhHHHHHHHHHHCCC-CCHHHHHHHHHHHHHh
Confidence 0011122344666 99999999999999999999998 9999999999999999986 5999999999999986
Q ss_pred CCCCCCCCCCCCCC-CCCCCccC
Q 041177 396 QGFTQQPGLYCHDN-HVDKPFIC 417 (417)
Q Consensus 396 ~~y~Q~PqL~~s~~-~~~~~fi~ 417 (417)
+|+|+|||+||++ |+|++||+
T Consensus 329 -kysQ~PQLs~s~~~d~~~~f~~ 350 (350)
T 4f6o_A 329 -KYSQKPQLSSSHPIDVNLQFIM 350 (350)
T ss_dssp -TCSCEEEEEESSCCCTTSBCCC
T ss_pred -cCCCCceecccCCCCCCccccC
Confidence 8999999999999 99999996
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=100.00 E-value=1.3e-56 Score=452.94 Aligned_cols=254 Identities=36% Similarity=0.631 Sum_probs=206.9
Q ss_pred CCeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCC---CCCCcHHHHHHHHHHHHHhCCCCC
Q 041177 1 MTKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDR---STQPTGRNIRRALGNLVRSAEPGD 77 (417)
Q Consensus 1 g~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~---~~~pTr~nI~~aL~~Lv~~a~pgD 77 (417)
++||||+||||||+...+|++|+|||++|+++|++ +||++++|++|+|++.. ...||++||+++|+||+++++|+|
T Consensus 91 grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~-~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~a~pgD 169 (367)
T 4af8_A 91 QTVRALFIGINYYGTSAALSGCCNDVKQMLATLQK-RGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGD 169 (367)
T ss_dssp CCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHH-TTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHTCCTTC
T ss_pred CCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHHH-cCCCchheEEecccccccccccCCCHHHHHHHHHHHHHhCCCCC
Confidence 58999999999998888999999999999999974 89999999999986421 236999999999999999999999
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCC---CCCHHHHHHH-HHhCCCCCeEEEEEeCCCCCcCCccchhhcC
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMN---LITDDDFREF-VDQIPPGCEITVVSDSCHSGGLIDEAKEQIG 153 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~---~Is~~el~~l-l~~l~~g~~l~iILDcChSG~~~d~~~~~ig 153 (417)
++||||||||.+.++. + ++.+||||+|||+|++ .|+++||..+ ++++|+++++++||||||||++++.++.+..
T Consensus 170 ~l~fyFSGHG~q~~d~-~-de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt~~dlp~~~~~ 247 (367)
T 4af8_A 170 VLFFHYSGHGTQCKSR-G-DSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVC 247 (367)
T ss_dssp EEEEEEESCEEEECCC-------CCEEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEEECTTCCCCTTCSEEEEC
T ss_pred EEEEEEcCCcCccCCC-C-CCCCCcceEEEeecCCcCCCccHHHHHHHHHHhccCCCEEEEEEeCCCCCccccccccccc
Confidence 9999999999999875 3 6789999999999975 7999999887 7999988999999999999999999876311
Q ss_pred CCcccchhhhcCCCCchhHHHHHHHHHHHHhcCccCCCCCcCCCCCCCCccchhhhhccCCCCCcccCCCCChhHHHHHH
Q 041177 154 ESTRRDEEEESGSGFNFKSFLHKKVENAFESRGIHIPSGLRHHRPSGDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEIL 233 (417)
Q Consensus 154 ~st~~~~e~e~~g~g~FT~~L~~~L~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lp~~~~~~~l 233 (417)
.+. + .+
T Consensus 248 r~~---------------------------------~------------------------------~~----------- 253 (367)
T 4af8_A 248 SGG---------------------------------E------------------------------QA----------- 253 (367)
T ss_dssp CTT---------------------------------C------------------------------CT-----------
T ss_pred ccc---------------------------------c------------------------------cc-----------
Confidence 000 0 00
Q ss_pred HHhhCCCCcccCccccchhhhccCCcchHHHHHHHHHHHhhhcCCCCCCCCCccchhhhhHHHHHhhhcccCcccccccc
Q 041177 234 KQQTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQGDGESGGGGFLGMVGSLAQEFLKHKLEESDESYAKPA 313 (417)
Q Consensus 234 ~~~~g~~~~~~~~i~~~l~~~fg~~as~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (417)
...... ..+
T Consensus 254 ---~~~~~~-----------------------------~~~--------------------------------------- 262 (367)
T 4af8_A 254 ---SGTPHM-----------------------------KRI--------------------------------------- 262 (367)
T ss_dssp ---TSCCCC-----------------------------EEC---------------------------------------
T ss_pred ---ccchhh-----------------------------hhh---------------------------------------
Confidence 000000 000
Q ss_pred chhccccccccccCCCCCCCCCCeEEeecCCCCCcccccCCCC----CCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041177 314 LETEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSG----KASEAYGALSNAIQIIIAESDGAVTNRELVLST 389 (417)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~il~SGC~d~qtSaDa~~~g----~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~ 389 (417)
.+.+.+ |.++||||||+|+|||+|+.+.+ ..+.++|||||||+++|+++++ +||.+||++|
T Consensus 263 -------------~~~~~~-~~~vi~~Sac~d~QtSad~~~~~~f~~g~~~~~GafTyali~~L~~~~~-~Ty~~Ll~~v 327 (367)
T 4af8_A 263 -------------REGNDV-LGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITCMLMNNQS-LSYGKLLIET 327 (367)
T ss_dssp -------------SSCCCC-CSEEEEEEEECCCSCCCCCC-------CCCBCBSHHHHHHHHHHHCCSC-CBHHHHHHHH
T ss_pred -------------ccCCCC-CCCEEEEEecCCCCchhhhhccccccccccCcccHHHHHHHHHHHhCCC-CCHHHHHHHH
Confidence 011223 88999999999999999998642 1247899999999999999886 5999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCC-CCCCCccC
Q 041177 390 RQMLKKQGFTQQPGLYCHDN-HVDKPFIC 417 (417)
Q Consensus 390 R~~L~~~~y~Q~PqL~~s~~-~~~~~fi~ 417 (417)
|+.|++.+|+|+|||+||++ |+++||+.
T Consensus 328 r~~l~~~g~~Q~PqLsss~~~d~~~~F~l 356 (367)
T 4af8_A 328 RDMLKRKRFKQVPQLSASKAIDLDQTFSL 356 (367)
T ss_dssp HHHHHHTTBSCEEEEEESSCBCTTSBCCS
T ss_pred HHHHHHhCCCCCceeccCCCCCCCceeEe
Confidence 99999889999999999999 99999974
No 3
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=100.00 E-value=1.9e-44 Score=353.24 Aligned_cols=262 Identities=23% Similarity=0.397 Sum_probs=194.8
Q ss_pred CCeEEEEEeeCC-----C-CCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCC
Q 041177 1 MTKKAVLIGINY-----P-GTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAE 74 (417)
Q Consensus 1 g~r~ALlIGINY-----~-~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~ 74 (417)
++|+||+||||+ | +...+|++|+|||++|+++|. ++||+ |++|+|. .||++||+++|+||+++++
T Consensus 2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~-~~Gf~---v~~l~~~-----~~t~~~i~~al~~l~~~~~ 72 (285)
T 3bij_A 2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAA-ERGFA---VTTLMTK-----AATRAKVIDAIGKAAKALG 72 (285)
T ss_dssp CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHH-HTTCE---EEEEEGG-----GCCHHHHHHHHHHHHHHCC
T ss_pred CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHH-HcCCc---eEEecCC-----ccCHHHHHHHHHHHHHhCC
Confidence 589999999995 2 346799999999999999996 58996 7778775 3899999999999999999
Q ss_pred CCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcCCc-cchhhcC
Q 041177 75 PGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQIPPGCEITVVSDSCHSGGLID-EAKEQIG 153 (417)
Q Consensus 75 pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~l~~g~~l~iILDcChSG~~~d-~~~~~ig 153 (417)
|+|++||||||||.+.++.+| +|.+|++++|||+|.. |.+++|..+|+++++++++++||||||||++.+ .|+...
T Consensus 73 ~~D~~~~yfSGHG~~~~~~~g-~e~dg~~~~l~p~D~~-i~~~~l~~~l~~l~~~~~~~vilD~C~SG~~~~~~p~~~~- 149 (285)
T 3bij_A 73 KGDIFMLSYSGHGGQVPDTSN-DEPDGVDETWCLFDGE-LIDDELYALLGKFAAGVRVLVFSDSCHSGTVVKMAYYNGT- 149 (285)
T ss_dssp TTCEEEEEEESCEEEEECTTS-CCTTCEEEEEECSSSE-EEHHHHHHHHTTSCSSCEEEEEEECCCCCCHHHHHHTTC--
T ss_pred CCCEEEEEEcCCcccccCCCC-CccCCCcceEEecCCC-ccHHHHHHHHHhccCCCeEEEEEecCCCCccccccccccc-
Confidence 999999999999999987777 7889999999999975 778999999999987789999999999999987 554210
Q ss_pred CCcccchhhhcCCCCchhHHHHHHHHHHHHhcCccCCCCCcCCCCCCCCccchhhhhccCCCCCcccCCCCChhHHHHHH
Q 041177 154 ESTRRDEEEESGSGFNFKSFLHKKVENAFESRGIHIPSGLRHHRPSGDEDVEDREVEAGYGEGGYHKNKSLPLSTLIEIL 233 (417)
Q Consensus 154 ~st~~~~e~e~~g~g~FT~~L~~~L~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lp~~~~~~~l 233 (417)
.+. . +.+ ...+..+.|++|......++
T Consensus 150 ~~~-----------------~---~~~---------------------------------~~~g~~~~r~~~~~~~~~~~ 176 (285)
T 3bij_A 150 TAA-----------------R---SAG---------------------------------PDEGEIRYRAMPQSVAMRTY 176 (285)
T ss_dssp -----------------------------------------------------------------CEESBCCHHHHHHHH
T ss_pred ccc-----------------c---ccc---------------------------------ccccccceeecCchhhhhhh
Confidence 000 0 000 00112345677765544333
Q ss_pred HHhhCCCCcccCccccchhhhccCCcchHHHHHHHHHHHhhhcCCCCCCCCCccchhhhhHHHHHhhhcccCcccccccc
Q 041177 234 KQQTGKDDIDVGKIRPTLFDMFGEDATPKVKKFMKVLLNKLKQGDGESGGGGFLGMVGSLAQEFLKHKLEESDESYAKPA 313 (417)
Q Consensus 234 ~~~~g~~~~~~~~i~~~l~~~fg~~as~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (417)
+... .|...+...+ .
T Consensus 177 ~~~~---------------------------~~~~~l~~~~----------------------------~---------- 191 (285)
T 3bij_A 177 RANR---------------------------EFYDTIQQKT----------------------------K---------- 191 (285)
T ss_dssp HHTH---------------------------HHHHHHHHHC----------------------------C----------
T ss_pred hcch---------------------------hHHHHHhhhc----------------------------c----------
Confidence 3200 1111110000 0
Q ss_pred chhccccccccccCCCCCCCCCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041177 314 LETEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQML 393 (417)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L 393 (417)
......+ +.++|+||+|+++|||+|. ..+|+|||||+++|+....++||.+|+..+|+.+
T Consensus 192 ------------~~~~~~~-~~~~i~lsa~~~~q~A~e~-------~~~G~FT~aLl~~L~~~~~~~s~~~l~~~v~~~~ 251 (285)
T 3bij_A 192 ------------KVDLADV-KASILLISGCQDNQLSQDG-------AFNGAFTGQLLRVWKNGLYKGSYRSFHKAIVRRM 251 (285)
T ss_dssp ------------CCCTTTC-SSEEEEEESSCTTSCCEEC-------SSSCHHHHHHHHHHGGGTCCSCHHHHHHHHHHHS
T ss_pred ------------cccccCC-CCCEEEEEeCCCCcccccc-------ccCCHHHHHHHHHHhhCCCCcCHHHHHHHHHHhc
Confidence 0011222 7789999999999999994 3469999999999998776789999999998754
Q ss_pred HcCCCCCCCCCCCCCCCCCCCcc
Q 041177 394 KKQGFTQQPGLYCHDNHVDKPFI 416 (417)
Q Consensus 394 ~~~~y~Q~PqL~~s~~~~~~~fi 416 (417)
++.|+|+++++. +.+.+|+
T Consensus 252 ---~~~Q~P~~~~~g-~~~~~Fl 270 (285)
T 3bij_A 252 ---PPDQTPNFFTAG-TPDPAFL 270 (285)
T ss_dssp ---CTTCCCEEEEEE-SCCHHHH
T ss_pred ---CCCCCcceeCCC-CCCcccc
Confidence 789999999862 3444443
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.91 E-value=2.6e-23 Score=211.60 Aligned_cols=121 Identities=22% Similarity=0.303 Sum_probs=103.3
Q ss_pred CCeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEE
Q 041177 1 MTKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLF 80 (417)
Q Consensus 1 g~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~ 80 (417)
++|+||+|||+.|....+|++|.|||++|+++|+ .+||+ |.++.| +|+++|+++|+++.+.++++|.++
T Consensus 4 ~~r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~-~lGF~---V~~l~D-------lT~~eI~~aL~~f~~~~~~~D~~l 72 (390)
T 3uoa_B 4 KDKVALLIGNMNYREHPKLKAPLVDVYELTNLLR-QLDFK---VVSLLD-------LTEYEMRNAVDEFLLLLDKGVYGL 72 (390)
T ss_dssp SCEEEEEEECCCCSSSCCCSTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHHTCCTTCEEE
T ss_pred CCCEEEEEEecCCCCcccCCChHHHHHHHHHHHH-HcCCe---EEEeec-------CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 4799999999855555789999999999999998 48996 677877 799999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCcceeecCCCC-------CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 041177 81 VHYSGHGTRLPAETGEDDDTGYDECIVPSDMN-------LITDDDFREFVDQIPPGCEITVVSDSCHSGG 143 (417)
Q Consensus 81 fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~-------~Is~~el~~ll~~l~~g~~l~iILDcChSG~ 143 (417)
|||||||.+.. | . .+|+|.|.+ .|+.++|..+++.++. ...++|||||+++.
T Consensus 73 ~yfsGHG~~~~---g----~---~yL~p~Da~~~~~~~~~isl~~Ll~~l~~~~~-K~kL~ILDACrg~~ 131 (390)
T 3uoa_B 73 LYYAGHGYENF---G----N---SFMVPVDAPNPYRSENCLCVQNILKLMQEKET-GLNVFLLDMCRKRN 131 (390)
T ss_dssp EEEESCEEEET---T----E---EEECCTTCCSSCCGGGSEEHHHHHHHHHHTTC-SEEEEEEESCCCCC
T ss_pred EEEecCccccC---C----c---ceEEecCCCccccccceeeHHHHHHHHHhcCC-CceEEEEECCCCCC
Confidence 99999998752 1 2 249999985 4788889888888764 67889999999963
No 5
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=99.42 E-value=2.2e-12 Score=118.49 Aligned_cols=118 Identities=17% Similarity=0.272 Sum_probs=94.3
Q ss_pred CeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh--CCCCCEE
Q 041177 2 TKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS--AEPGDVL 79 (417)
Q Consensus 2 ~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~--a~pgD~l 79 (417)
+++|||||+..|....++.|+.+|+++|+++|. .+||. |.+..| +|+++|+++|+++.+. .+..|.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~-~LgF~---V~~~~d-------lt~~em~~~l~~f~~~~d~~~~d~~ 111 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN-------LTASDMTTELEAFAHRPEHKTSDST 111 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHTCGGGGGCSCE
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHH-HCCCE---EEEecC-------CCHHHHHHHHHHHHhhhhcCCCCEE
Confidence 679999999744456789999999999999998 58996 677777 7999999999999763 4578999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcceeecCCC-----CCCCHHHHHHHHHhC--C--CCCeEEEEEeCCCCCcC
Q 041177 80 FVHYSGHGTRLPAETGEDDDTGYDECIVPSDM-----NLITDDDFREFVDQI--P--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 80 ~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~-----~~Is~~el~~ll~~l--~--~g~~l~iILDcChSG~~ 144 (417)
+|||.|||.+. + |++.|. +.++.++|..++..- | .++--++|+|+|+.+..
T Consensus 112 v~~~lsHG~~g-----------~---i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gKPKlffiqACRg~~~ 171 (178)
T 2h54_A 112 FLVFMSHGIRE-----------G---ICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQACRGDSP 171 (178)
T ss_dssp EEEEESCBCSS-----------C---EECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTSCEEEEEESCSSSBC
T ss_pred EEEEecCCCCC-----------e---EEeecCCcccCcEEEHHHHHHHHhhcCChhhcCCceEEEEECCCCCCC
Confidence 99999999751 2 677776 257888888877642 2 14566899999998653
No 6
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=99.35 E-value=3.7e-11 Score=116.94 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=93.8
Q ss_pred CeEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhC-CCCC
Q 041177 2 TKKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSA-EPGD 77 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a-~pgD 77 (417)
|+.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| +|.++|+++|+++.+.. ...|
T Consensus 21 rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d-------lt~~em~~~l~~~~~~~h~~~D 89 (277)
T 1nw9_B 21 CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD-------LTAKKMVLALLELARQDHGALD 89 (277)
T ss_dssp CEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES-------CCHHHHHHHHHHHHHSCCTTCS
T ss_pred ccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEcC-------CCHHHHHHHHHHHHHhhcccCC
Confidence 6799999995 653 35789999999999999998 58996 677777 79999999999998764 5679
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcC
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~~ 144 (417)
.++++|.+||.+.. + .+.+..+++.|...++.++|...+.. .| .++--++|+|+|.....
T Consensus 90 ~~vv~ilSHG~~~~---~----~~~~g~iy~~D~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~ 153 (277)
T 1nw9_B 90 CCVVVILSHGCQAS---H----LQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQK 153 (277)
T ss_dssp EEEEEEEEEEECCC---C----SSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC----
T ss_pred eEEEEEeCCCCccc---c----ccCCCcEEecCCceeeHHHHHHHhcccCChhHcCCCcEEEEeccCCCcc
Confidence 99999999998753 1 11223488999877777887776642 22 14456799999975543
No 7
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=99.35 E-value=1.8e-11 Score=121.13 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=90.9
Q ss_pred CeEEEEEeeC-CCCC--CCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhC-CCCC
Q 041177 2 TKKAVLIGIN-YPGT--KAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSA-EPGD 77 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~~--~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a-~pgD 77 (417)
++.|||||+. |... ...+.|+.+|+++|+++|+ .+||+ |.+..| +|.+.|+++|+++.+.. ...|
T Consensus 69 rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~~~~~~h~~~d 137 (305)
T 1f1j_A 69 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND-------CSCAKMQDLLKKASEEDHTNAA 137 (305)
T ss_dssp EEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES-------CCHHHHHHHHHHHHHSCGGGEE
T ss_pred CCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHH-HCCCE---EEEecC-------cCHHHHHHHHHHHHHhhcCCCC
Confidence 5789999996 6542 4567899999999999998 58996 677777 79999999999987763 5679
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcC
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~~ 144 (417)
.++|||.|||.. |+ |++.|. .|..++|...+.. .| .++--++|+|+|+...+
T Consensus 138 ~~vv~ilsHG~~-----------~~---i~g~D~-~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 193 (305)
T 1f1j_A 138 CFACILLSHGEE-----------NV---IYGKDG-VTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTEL 193 (305)
T ss_dssp EEEEEEESCEET-----------TE---EECSSS-EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EEEEEEecCCCC-----------Ce---EEecCC-eEEHHHHHHHhhhccChhhcCCceEEEeccccCCcc
Confidence 999999999963 23 899996 4666777665542 22 14556799999987654
No 8
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=99.34 E-value=9.8e-12 Score=119.49 Aligned_cols=116 Identities=11% Similarity=0.172 Sum_probs=91.3
Q ss_pred CeEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhC-CCCC
Q 041177 2 TKKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSA-EPGD 77 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a-~pgD 77 (417)
++.|||||+. |.. ...++.|+.+|+++|+++|+ .+||+ |.+..| +|.+.|+++|+++.+.. +..|
T Consensus 16 rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~-~LgF~---V~~~~d-------lt~~em~~~l~~~~~~~~~~~d 84 (250)
T 2j32_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND-------LTREEIVELMRDVSKEDHSKRS 84 (250)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHTSCCTTEE
T ss_pred ccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC-------CCHHHHHHHHHHHHHhhccCCC
Confidence 5789999995 654 25789999999999999998 58996 677777 79999999999998764 5679
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCc
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGG 143 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~ 143 (417)
.++|||.|||.. | .+++.|. .+..++|...+.. .| .++--++|+|+|....
T Consensus 85 ~~v~~~lsHG~~-----------g---~i~~~D~-~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~ 139 (250)
T 2j32_A 85 SFVCVLLSHGEE-----------G---IIFGTNG-PVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTE 139 (250)
T ss_dssp EEEEEEESCEET-----------T---EEEETTE-EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEE
T ss_pred EEEEEECCCCCC-----------C---eEEecCC-cEEHHHHHHHhccccChhHcCCCeEEEEecccCCc
Confidence 999999999962 2 2778887 5777777766654 22 1445579999998543
No 9
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=99.33 E-value=2.5e-11 Score=118.19 Aligned_cols=116 Identities=17% Similarity=0.290 Sum_probs=90.8
Q ss_pred CeEEEEEeeC-CCC-CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh-CCCCCE
Q 041177 2 TKKAVLIGIN-YPG-TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS-AEPGDV 78 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~-a~pgD~ 78 (417)
++.|||||+. |.. ...++.|+.+|+++|+++|+ .+||+ |.+..| +|.++|+++|+++.+. ....|.
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~~~~~dh~~~d~ 100 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN-------LKSEEINKFIQQTAEMDHSDADC 100 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHTSCCTTEEE
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC-------cCHHHHHHHHHHHHHhhcCCCCE
Confidence 5789999996 654 36789999999999999998 58996 677777 7999999999999865 467799
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCc
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGG 143 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~ 143 (417)
++|+|.|||.. |+ |++.|.. +..++|...+.. .| .++--++|+|+|....
T Consensus 101 ~v~~~lsHG~~-----------~~---i~~~D~~-v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~ 154 (272)
T 1m72_A 101 LLVAVLTHGEL-----------GM---LYAKDTH-YKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDR 154 (272)
T ss_dssp EEEEEESCEET-----------TE---EECSSSE-ECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSB
T ss_pred EEEEEcCCCCC-----------CE---EEecCCc-EEHHHHHHHhccccChhhcCCceEEEEeCCCCCc
Confidence 99999999952 24 8999974 555666665542 22 1445679999998543
No 10
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=99.29 E-value=4.3e-11 Score=118.63 Aligned_cols=117 Identities=17% Similarity=0.279 Sum_probs=91.7
Q ss_pred CeEEEEEeeC-CCC-CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh-CCCCCE
Q 041177 2 TKKAVLIGIN-YPG-TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS-AEPGDV 78 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~-a~pgD~ 78 (417)
++.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| +|.+.|+++|+++.+. ....|.
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~f~~~dh~~~D~ 128 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN-------LKSEEINKFIQQTAEMDHSDADC 128 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHSSCGGGBSC
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC-------CCHHHHHHHHHHHHHhccCCCCE
Confidence 6789999996 654 36789999999999999998 58996 677777 7999999999999865 467899
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcC
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~~ 144 (417)
++|||.|||.. |+ |++.|.. +..++|...+.. .| .++--++|+|+|....+
T Consensus 129 ~vv~ilSHG~~-----------g~---i~g~D~~-v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 183 (310)
T 2nn3_C 129 LLVAVLTAGEL-----------GM---LYAKDTH-YKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRL 183 (310)
T ss_dssp EEEEEEEEEET-----------TE---EECSSCE-ECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCC
T ss_pred EEEEEeCCCCC-----------CE---EEecCCc-EEHHHHHHHhccccChhhcCCceEEEEecccCCcc
Confidence 99999999952 24 9999974 666677665542 22 14456799999986433
No 11
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=99.26 E-value=1.2e-10 Score=113.61 Aligned_cols=115 Identities=11% Similarity=0.180 Sum_probs=91.5
Q ss_pred CeEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh-CCCCC
Q 041177 2 TKKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS-AEPGD 77 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~-a~pgD 77 (417)
++.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| +|.++|+++|+++.+. ....|
T Consensus 44 rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~f~~~dh~~~d 112 (277)
T 4ehd_A 44 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND-------LTREEIVELMRDVSKEDHSKRS 112 (277)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHTSCCTTEE
T ss_pred CCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC-------CCHHHHHHHHHHHHhhcccCCC
Confidence 5799999995 653 35688999999999999998 58996 677777 7999999999999865 56779
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCC
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSG 142 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG 142 (417)
.++++|.+||.+ |+ |++.|.. +..++|...+.. .| .++--++|+|+|+..
T Consensus 113 ~~vv~ilSHG~~-----------g~---i~g~D~~-v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~ 166 (277)
T 4ehd_A 113 SFVCVLLSHGEE-----------GI---IFGTNGP-VDLKKITNFFRGDRCRSLTGKPKLFIIQACRGT 166 (277)
T ss_dssp EEEEEEESCEET-----------TE---EEETTEE-EEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSS
T ss_pred EEEEEEEcCCCC-----------CE---EEEeCCc-EeHHHHHHHhhhccCchhcCCccEEEEecCCCC
Confidence 999999999974 23 8999974 777777666642 22 244567999999854
No 12
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=99.24 E-value=2.6e-11 Score=117.21 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=80.6
Q ss_pred CeEEEEEeeC-CCC-CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh-CCCCCE
Q 041177 2 TKKAVLIGIN-YPG-TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS-AEPGDV 78 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~-a~pgD~ 78 (417)
|+.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| +|.++|.++|+++.+. ....|.
T Consensus 20 rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~~~~~~h~~~d~ 88 (259)
T 3sir_A 20 RGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLK-QLDFE---VTVYKD-------CRYKDILRTIEYSASQNHSDSDC 88 (259)
T ss_dssp EEEEEEEEECCC-----------CCHHHHHHHHHH-HTTCE---EEEEEE-------CSHHHHHHHHHHHHTSCCTTEEE
T ss_pred ccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC-------CCHHHHHHHHHHHHHhhccCCCE
Confidence 5789999995 654 35678899999999999998 58997 677777 7999999999998765 467899
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCc
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGG 143 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~ 143 (417)
++|+|.|||.+ |+ |++.|.. +..++|...+.. .| .++--++|+|+|+...
T Consensus 89 ~v~~~lsHG~~-----------g~---i~~~D~~-v~l~~i~~~f~~~~cpsL~gKPKlf~iQACRG~~ 142 (259)
T 3sir_A 89 ILVAILSHGEM-----------GY---IYAKDTQ-YKLDNIWSFFTANHCPSLAGKPKLFFIQACQGDR 142 (259)
T ss_dssp EEEEEEECTTC-----------CC---CCCTTHH-HHHHHTTGGGSTTTCGGGSSSCEEEEEEEETTSC
T ss_pred EEEEEecCCCC-----------Ce---EEeCCCc-EEHHHHHHHhhhccCccccCCCCEEEEecCCCCc
Confidence 99999999974 23 7888863 433444333432 12 1445679999999653
No 13
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=99.20 E-value=4.3e-10 Score=109.74 Aligned_cols=116 Identities=14% Similarity=0.217 Sum_probs=92.1
Q ss_pred CeEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh-CCCCC
Q 041177 2 TKKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS-AEPGD 77 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~-a~pgD 77 (417)
|+.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|.++|.++|+++.+. ....|
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~~~~~~h~~~d 89 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND-------LKAEELLLKIHEVSTVSHADAD 89 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHHSCCTTBS
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC-------CCHHHHHHHHHHHHhhcccCCC
Confidence 5789999995 653 46789999999999999998 58996 677777 7999999999998654 46779
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CCC--CCeEEEEEeCCCCCc
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IPP--GCEITVVSDSCHSGG 143 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~~--g~~l~iILDcChSG~ 143 (417)
.++++|.+||.. |+ |++.|.. ++.++|...+.. .|. ++--++|+|+|....
T Consensus 90 ~~vv~ilSHG~~-----------g~---i~g~D~~-v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~ 144 (278)
T 3od5_A 90 CFVCVFLSHGEG-----------NH---IYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQ 144 (278)
T ss_dssp CEEEEEESCEET-----------TE---EECSSSE-EEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSB
T ss_pred EEEEEEECCCCC-----------CE---EEEeCCe-EEHHHHHHHhccccChhhcCCCcEEEEecCCCCc
Confidence 999999999963 23 8999987 777777776653 221 445679999999543
No 14
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=99.16 E-value=7.7e-10 Score=107.58 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=93.4
Q ss_pred CeEEEEEeeC-CCC---------CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHH
Q 041177 2 TKKAVLIGIN-YPG---------TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVR 71 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~---------~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~ 71 (417)
|..||||++- |.. ...+..|+.+|+++|+++|+ .+||. |.+..| +|.++|.++|+++.+
T Consensus 17 rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~~~~ 85 (271)
T 3h11_B 17 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD-------CTVEQIYEILKIYQL 85 (271)
T ss_dssp CCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHH
T ss_pred CCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC-------CCHHHHHHHHHHHHH
Confidence 6799999994 654 15678999999999999998 58996 677777 799999999999876
Q ss_pred h-CCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcC
Q 041177 72 S-AEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 72 ~-a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~~ 144 (417)
. .+..|.++++|.+||.. |+ |++.|...++.++|...+.. .| .++--++|+|+|.....
T Consensus 86 ~~h~~~d~~v~~ilSHG~~-----------g~---i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 149 (271)
T 3h11_B 86 MDHSNMDCFICCILSHGDK-----------GI---IYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNY 149 (271)
T ss_dssp SCCTTCSCEEEEEESCEET-----------TE---EECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred hcCCCCCEEEEEEEcCCcC-----------CE---EEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcc
Confidence 4 35689999999999963 23 99999877777787766643 22 14556799999997644
No 15
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=113.91 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=93.3
Q ss_pred CeEEEEEeeCCCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHH--hCCCCCEE
Q 041177 2 TKKAVLIGINYPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVR--SAEPGDVL 79 (417)
Q Consensus 2 ~r~ALlIGINY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~--~a~pgD~l 79 (417)
+|.|||||+..+....++.|+.+|+++|+++|+ .+||. |.+..| .|.++|+++|+++.+ +.+..|.+
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~f~~~~dh~~~d~~ 128 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN-------LTASDMTTELEAFAHRPEHKTSDST 128 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHTCGGGGGCSCE
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEeeC-------CCHHHHHHHHHHHHhhhccCCCCEE
Confidence 578999999633456789999999999999998 58996 677777 799999999999975 34568999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcceeecCCC-----CCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcC
Q 041177 80 FVHYSGHGTRLPAETGEDDDTGYDECIVPSDM-----NLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 80 ~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~-----~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~~ 144 (417)
+|||.|||.+. + |++.|+ ..+..++|...+.. .| .++--++|+|+|+....
T Consensus 129 vv~~lsHG~~~-----------~---i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~ 188 (302)
T 3e4c_A 129 FLVFMSHGIRE-----------G---ICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSP 188 (302)
T ss_dssp EEEEEEEEETT-----------E---EECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSC
T ss_pred EEEEeccCcCC-----------e---EEeecccccCCcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCC
Confidence 99999999752 2 677775 35777888777753 22 24556799999997654
No 16
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=99.06 E-value=3.6e-10 Score=112.24 Aligned_cols=122 Identities=12% Similarity=0.175 Sum_probs=92.9
Q ss_pred CeEEEEEeeC-CCCCCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhC-C-CCCE
Q 041177 2 TKKAVLIGIN-YPGTKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSA-E-PGDV 78 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a-~-pgD~ 78 (417)
++.||||++. |.....++.|+.+|+++|+++|+ .+||. |.+..| .|.+.|+++|+++.+.. . ..|.
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d-------lt~~em~~~l~~f~~~~h~~~~D~ 129 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQ-ELNFT---IFPYGN-------VNQDQFFKLLTMVTSSSYVQNTEC 129 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHH-HTTEE---EEEECS-------CCHHHHHHHHHHHHTSHHHHTCSC
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEccC-------CCHHHHHHHHHHHHHHhhcCCCCE
Confidence 6899999995 65322789999999999999998 58996 677776 79999999999998654 3 6899
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcC
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~~ 144 (417)
++++|.+||.+.. | .| +|++.|...+..++|...+.. .| .++--++|+|+|.....
T Consensus 130 ~vv~ilSHG~~~~---g----~g---~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 189 (316)
T 2fp3_A 130 FVMVLMTHGNSVE---G----KE---KVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEY 189 (316)
T ss_dssp EEEEEESCEECCT---T----CC---EEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC-----
T ss_pred EEEEEccCCCccC---C----CC---EEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcc
Confidence 9999999998753 1 23 499999887888888777653 22 24556799999986543
No 17
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=98.72 E-value=8.7e-08 Score=86.97 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=93.4
Q ss_pred CeEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHH--hCCCC
Q 041177 2 TKKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVR--SAEPG 76 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~--~a~pg 76 (417)
+..||||.+. |.. ...+..|+..|+++|.++|. .+||. |.+..| .|.++|.+.|+++.+ +....
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d-------lt~~em~~~l~~~~~~~dh~~~ 101 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFK-LLGYD---VHVLCD-------QTAQEMQEKLQNFAQLPAHRVT 101 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES-------CCHHHHHHHHHHHHTCGGGGTS
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHH-HCCCE---EEEeeC-------CCHHHHHHHHHHhhhhhhccCC
Confidence 5789999885 543 24678999999999999998 58996 577776 799999999999987 34678
Q ss_pred CEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CCC--CCeEEEEEeCCCCCcC
Q 041177 77 DVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IPP--GCEITVVSDSCHSGGL 144 (417)
Q Consensus 77 D~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~~--g~~l~iILDcChSG~~ 144 (417)
|.++++|.+||.. |+ |++.|...+..++|...+.. .|. ++--++|+++|.....
T Consensus 102 dc~vv~ilSHG~~-----------g~---i~g~D~~~v~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~ 159 (167)
T 1pyo_A 102 DSCIVALLSHGVE-----------GA---IYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQACRGDET 159 (167)
T ss_dssp SEEEEEEESCEET-----------TE---EECTTSCEEEHHHHHHHTSTTTCGGGTTSCEEEEEESCSSSBC
T ss_pred CEEEEEeCCCCCC-----------Ce---EEEeCCCEEcHHHHHHHhcccCChhHcCCCeEEEEECCCCCCC
Confidence 9999999999964 23 88999877788888877753 232 5556799999987554
No 18
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=98.54 E-value=4.4e-07 Score=80.60 Aligned_cols=117 Identities=12% Similarity=0.190 Sum_probs=89.2
Q ss_pred CeEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhC-CCCC
Q 041177 2 TKKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSA-EPGD 77 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a-~pgD 77 (417)
+..||||... |.. ...+..|+..|+++|.++|. .+||. |.+..| +|.++|.+.|+++.+.- ...|
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d-------lt~~em~~~l~~~~~~dh~~~d 84 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND-------LTREEIVELMRDVSKEDHSKRS 84 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHHSCCTTEE
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEeeC-------CCHHHHHHHHHHHHHhhcCCCC
Confidence 4578888764 443 24677999999999999998 58997 677777 79999999999998753 5669
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHH--hCCC--CCeEEEEEeCCCCCcC
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVD--QIPP--GCEITVVSDSCHSGGL 144 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~--~l~~--g~~l~iILDcChSG~~ 144 (417)
.+++++.+||.. | .|++.|. .+..++|...+. ..|. ++--++|+++|.....
T Consensus 85 c~vv~ilSHG~~-----------g---~i~g~D~-~~~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~ 140 (146)
T 2dko_A 85 SFVCVLLSHGEE-----------G---IIFGTNG-PVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140 (146)
T ss_dssp EEEEEEESCEET-----------T---EEEETTE-EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred eEEEEeccCCCC-----------C---EEEEeCC-cEeHHHHHHHhccccChhhcCCCeEEEEECCCCCCC
Confidence 999999999962 2 3888887 577777766663 2332 5556899999986544
No 19
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=98.53 E-value=3.7e-07 Score=82.54 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=91.8
Q ss_pred CeEEEEEeeC-CCC---------CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHH
Q 041177 2 TKKAVLIGIN-YPG---------TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVR 71 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~---------~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~ 71 (417)
|.+||||..- |.. ...+..|+.+|+++|.++|. .+||. |.+..| +|.++|.+.|+++.+
T Consensus 23 rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d-------lt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 23 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD-------CTVEQIYEILKIYQL 91 (164)
T ss_dssp CCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHH
T ss_pred ceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC-------CCHHHHHHHHHHHHH
Confidence 5688999774 442 24688999999999999998 58996 577776 799999999999976
Q ss_pred h-CCCCCEEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CCC--CCeEEEEEeCCCCCcC
Q 041177 72 S-AEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IPP--GCEITVVSDSCHSGGL 144 (417)
Q Consensus 72 ~-a~pgD~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~~--g~~l~iILDcChSG~~ 144 (417)
. -...|.+++++.+||.. | .|+++|...+..++|...+.. .|. ++--++|+.+|.....
T Consensus 92 ~dh~~~dc~vv~ilSHG~~-----------g---~i~g~D~~~v~i~~i~~~F~~~~CpsL~gKPKlFfiQACRG~~~ 155 (164)
T 1qtn_A 92 MDHSNMDCFICCILSHGDK-----------G---IIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNY 155 (164)
T ss_dssp SCCTTCSCEEEEEESCEET-----------T---EEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCSSSBC
T ss_pred hhccCCCEEEEEeCCCCCC-----------C---EEEeeCCCEeeHHHHHHHhccccChhhcCCCeEEEEECCCCCCc
Confidence 5 36789999999999963 2 388999876777788776644 332 5556899999986544
No 20
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=98.19 E-value=7e-06 Score=74.86 Aligned_cols=116 Identities=15% Similarity=0.213 Sum_probs=86.1
Q ss_pred eEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhC-CCCCE
Q 041177 3 KKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSA-EPGDV 78 (417)
Q Consensus 3 r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a-~pgD~ 78 (417)
..||||... |.. ....-.|+..|+++|.++|. .+||. |.+..| +|.++|.+.|+++.+.- ...|.
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LgF~---V~v~~d-------lt~~em~~~l~~~s~~dh~~~dc 113 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND-------CSCAKMQDLLKKASEEDHTNAAC 113 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES-------CCHHHHHHHHHHHHTSCCTTEEE
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC-------CCHHHHHHHHHHHHHhhccCCCe
Confidence 467777764 432 24566899999999999998 58996 567776 79999999999987652 56799
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcC
Q 041177 79 LFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVDQ--IP--PGCEITVVSDSCHSGGL 144 (417)
Q Consensus 79 l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~~--l~--~g~~l~iILDcChSG~~ 144 (417)
+++++.+||.. | .|+..|.. +..++|..++.. .| .++--++|+.+|.....
T Consensus 114 ~vvvilSHG~~-----------g---~I~g~D~~-~~i~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~ 168 (173)
T 2ql9_A 114 FACILLSHGEE-----------N---VIYGKDGV-TPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTEL 168 (173)
T ss_dssp EEEEEESCEET-----------T---EEEETTEE-EEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EEEeecCCCCC-----------C---EEEEcCCc-EEHHHHHHHcCcccChhHcCCCeEEEEECCCCCCc
Confidence 99999999963 2 38888874 666676665542 22 25556899999986543
No 21
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=98.19 E-value=7.2e-06 Score=75.20 Aligned_cols=117 Identities=14% Similarity=0.220 Sum_probs=86.8
Q ss_pred CeEEEEEeeC-CCC--CCCCCcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh-CCCCC
Q 041177 2 TKKAVLIGIN-YPG--TKAELKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS-AEPGD 77 (417)
Q Consensus 2 ~r~ALlIGIN-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~-a~pgD 77 (417)
|.+||||.+- |.. ...+..|+..|+++|.++|. .+||. |.+..| .|.++|.+.|+++.+. -...|
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LGF~---V~~~~d-------lt~~em~~~l~~~~~~dh~~~d 112 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND-------LKAEELLLKIHEVSTVSHADAD 112 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES-------CCHHHHHHHHHHHHTSCCTTBS
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC-------CCHHHHHHHHHHHhhhhcCCCC
Confidence 4578998884 442 45688999999999999998 58996 577776 7999999999997543 24569
Q ss_pred EEEEEeeCCCCCCCCCCCCCCCCCCcceeecCCCCCCCHHHHHHHHH--hCCC--CCeEEEEEeCCCCCcC
Q 041177 78 VLFVHYSGHGTRLPAETGEDDDTGYDECIVPSDMNLITDDDFREFVD--QIPP--GCEITVVSDSCHSGGL 144 (417)
Q Consensus 78 ~l~fYFSGHG~~~~d~~G~de~dG~de~lvP~D~~~Is~~el~~ll~--~l~~--g~~l~iILDcChSG~~ 144 (417)
.+++.+..||.. | .|+..|.. +..++|..++. ..|. ++--++|+.+|.....
T Consensus 113 c~vvvilSHG~~-----------g---~I~g~D~~-v~l~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~ 168 (179)
T 3p45_A 113 CFVCVFLSHGEG-----------N---HIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQH 168 (179)
T ss_dssp CEEEEEESCEET-----------T---EEECSSSE-EEHHHHHGGGSGGGCGGGTTSCEEEEEECC-----
T ss_pred EEEEEEeccCCC-----------C---EEEEECCE-EEHHHHHHhcccccChhhCCCCcEEEEECCCCCCC
Confidence 999999999963 1 28888877 77778777664 2332 5566799999996543
No 22
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=97.64 E-value=3.7e-05 Score=74.73 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHH--hCCCCCEEEEEeeCCCCCCCCCCCCCCCCC
Q 041177 24 NDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVR--SAEPGDVLFVHYSGHGTRLPAETGEDDDTG 101 (417)
Q Consensus 24 nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~--~a~pgD~l~fYFSGHG~~~~d~~G~de~dG 101 (417)
+|+++|.++|. .+||. |.+..| .|.++|.+.|+++.+ +....|.++++|.+||.. |
T Consensus 54 ~D~~~L~~~f~-~LgF~---V~~~~d-------lt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~~-----------g 111 (272)
T 3h11_A 54 NETELLRDTFT-SLGYE---VQKFLH-------LSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGS-----------Q 111 (272)
T ss_dssp CCCSHHHHHHH-HHTEE---EEEEES-------CBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEET-----------T
T ss_pred HHHHHHHHHHH-HCCCE---EEEeeC-------CCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCCC-----------C
Confidence 69999999998 58996 677776 799999999999986 467899999999999963 2
Q ss_pred CcceeecCCCC--CCCHHHHHHHHHhC--CC--CCeEEEEEeCCCC
Q 041177 102 YDECIVPSDMN--LITDDDFREFVDQI--PP--GCEITVVSDSCHS 141 (417)
Q Consensus 102 ~de~lvP~D~~--~Is~~el~~ll~~l--~~--g~~l~iILDcChS 141 (417)
+ |++.|.. .+..++|..++..- |. ++--++|+++|..
T Consensus 112 ~---i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG 154 (272)
T 3h11_A 112 S---VYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVV 154 (272)
T ss_dssp E---ECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEEC
T ss_pred e---EEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEECCCC
Confidence 3 8899986 47888888877642 32 5556799999985
No 23
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=57.17 E-value=7.3 Score=31.81 Aligned_cols=68 Identities=7% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCCCCCC
Q 041177 334 PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKK-----------QGFTQQP 402 (417)
Q Consensus 334 ~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~-----------~~y~Q~P 402 (417)
.+|-++.=.+...-.|-.-...| . =|-.+++++|+++.....-.+||..++..... .+.+|+|
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~G---S---wfIq~Lc~~l~~~~~~~dl~~ilT~Vn~~V~~~~~~~~~~~~~~~~kQ~P 89 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDG---S---WFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIP 89 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTE---E---HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSSGGGTTCBCCC
T ss_pred CCCEEEEEeCCCCcEeEEcCCCC---C---eeHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhcccCCCCccCCceEee
Confidence 44444433444444443333333 3 37888999999854456999999888876654 2568999
Q ss_pred CCCCC
Q 041177 403 GLYCH 407 (417)
Q Consensus 403 qL~~s 407 (417)
+..++
T Consensus 90 ~~~st 94 (103)
T 2dko_B 90 CIVSM 94 (103)
T ss_dssp EEEEC
T ss_pred eeEEE
Confidence 87754
No 24
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=56.80 E-value=56 Score=30.61 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCC-CCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCC
Q 041177 27 KRMYACLVDRYGF-SEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGT 88 (417)
Q Consensus 27 ~~m~~~L~~~~Gf-~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~ 88 (417)
..+++.|.+.+|. ++++| +++.. +.+.|..++..+ .++||.+++---+|..
T Consensus 70 ~~l~~~la~~~g~~~~~~i-~~~~g-------~t~a~~~~~~~~---~~~gd~Vl~~~~~~~~ 121 (367)
T 3euc_A 70 EALRAKLKEVMQVPAGMEV-LLGNG-------SDEIISMLALAA---ARPGAKVMAPVPGFVM 121 (367)
T ss_dssp HHHHHHHHHHHTCCTTCEE-EEEEH-------HHHHHHHHHHHT---CCTTCEEEEEESCSCC
T ss_pred HHHHHHHHHHhCCCCcceE-EEcCC-------HHHHHHHHHHHH---cCCCCEEEEcCCCHHH
Confidence 4566666666677 44444 44431 233444444443 5689988876555543
No 25
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=56.50 E-value=7.7 Score=31.20 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCCCCCCCCCCC
Q 041177 364 ALSNAIQIIIAESDGAVTNRELVLSTRQMLKK-----------QGFTQQPGLYCH 407 (417)
Q Consensus 364 A~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~-----------~~y~Q~PqL~~s 407 (417)
=|-.+++++|+++.....-.+|+..++..... .+.+|+|+..++
T Consensus 34 wfIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~~~~~~~kQ~P~~~st 88 (97)
T 2ql9_B 34 WFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSM 88 (97)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSSGGGTTCBCCCEEEEC
T ss_pred eeHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhccccCCcccCCceEeeeeEEE
Confidence 37889999999854456999999988887753 366899988754
No 26
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=54.72 E-value=18 Score=30.40 Aligned_cols=68 Identities=7% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CCCCCCC
Q 041177 334 PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKK-----------QGFTQQP 402 (417)
Q Consensus 334 ~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~-----------~~y~Q~P 402 (417)
.+|-++.=.+...-.|-.-...| . =|-.++|++|+++.....-.+||..++..... .+.+|+|
T Consensus 15 ~aDfLi~yST~pG~vS~R~~~~G---S---wFIQ~Lc~vl~~~~~~~dl~~ilT~Vn~~Va~~~es~~~~~~~~~~KQ~P 88 (118)
T 2xzd_B 15 EADFLYAYSTAPGYYSWRNSKDG---S---WFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIP 88 (118)
T ss_dssp TTTEEEEESSCTTBCCCEETTTE---E---HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSSGGGTTCBCCC
T ss_pred CCCEEEEEeCCCCCEeeEeCCCC---C---ccHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhccccCCCccCCceEee
Confidence 44544443444444443333333 3 37888999999854456999999888877654 2568999
Q ss_pred CCCCC
Q 041177 403 GLYCH 407 (417)
Q Consensus 403 qL~~s 407 (417)
+..++
T Consensus 89 ~~~st 93 (118)
T 2xzd_B 89 CIVSM 93 (118)
T ss_dssp EEEEC
T ss_pred eeEEE
Confidence 87654
No 27
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=48.68 E-value=30 Score=33.43 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=49.8
Q ss_pred CCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCCCCCCCCC-CC
Q 041177 334 PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKK-QGFTQQPGLY-CH 407 (417)
Q Consensus 334 ~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~-~~y~Q~PqL~-~s 407 (417)
++|-++.-.......|.+-...| .-|..+++++|++......-.+|+.++|....+ .+.+|+|+.+ ++
T Consensus 222 ~aDfLi~yST~pG~vS~R~~~~G------SwFIqaL~~~l~~~~~~~dl~~il~~V~~~v~~~~~~kQ~P~~~~ss 291 (302)
T 3e4c_A 222 EKDFIAFCSSTPDNVSWRHPTMG------SVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMPTTERVT 291 (302)
T ss_dssp SCSEEEEEECCCCCCCSSSTTCC------CHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSSCCSSCCCCEEECBC
T ss_pred CCCEEEEEeCCCCceeecCCCCC------cHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCceeeeeeeccC
Confidence 56655555666777777665554 358899999999853346999999999987764 3678999986 44
No 28
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=48.60 E-value=31 Score=27.17 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCCCCCCCCC
Q 041177 334 PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKK-QGFTQQPGLY 405 (417)
Q Consensus 334 ~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~-~~y~Q~PqL~ 405 (417)
++|-++.=.+..+-.|-.-...| . =|-.++|++|+++.....-.+|+.+++....+ .+.+|+|+..
T Consensus 8 ~aDfL~~yST~pG~~S~R~~~~G---S---wfIq~Lc~~l~~~~~~~dl~~il~~V~~~v~~~~~~kQ~P~~~ 74 (88)
T 1sc3_B 8 EKDFIAFCSSTPDNVSWRHPTMG---S---VFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMPTTE 74 (88)
T ss_dssp SCSEEEEESSCTTBCCCEETTTE---E---HHHHHHHHHHHHHTTTSCHHHHHHHHHHHTCSCCSSCCCCEEE
T ss_pred CCCEEEEEeCCCCCEeeEcCCCC---C---HHHHHHHHHHHHhCCcCcHHHHHHHHHHHHhccCCceEcCEeE
Confidence 45555444444444544433333 3 37888999999854446999999988877653 4678999975
No 29
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=46.34 E-value=12 Score=29.99 Aligned_cols=43 Identities=7% Similarity=-0.096 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-----CCCCCCCCCCC
Q 041177 365 LSNAIQIIIAESDGAV-TNRELVLSTRQMLKKQ-----GFTQQPGLYCH 407 (417)
Q Consensus 365 ~s~a~~~~l~~~~~~~-s~~~ll~~~R~~L~~~-----~y~Q~PqL~~s 407 (417)
|-.+++++|+++.... .-.+|+.+++...... +.+|+|+..++
T Consensus 37 fIq~Lc~~l~~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~kQ~P~~~st 85 (95)
T 1qtn_B 37 YIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDKKNMGKQMPQPTFT 85 (95)
T ss_dssp HHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHCCBTTTTBBCCCEEEEC
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHHHHhhccCCCceEeeeeEEE
Confidence 7888999999855455 8899999998888752 45899998754
No 30
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=40.88 E-value=80 Score=29.78 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHhhcCC--CCc-cEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCC
Q 041177 21 GCVNDVKRMYACLVDRYGF--SEE-NITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGT 88 (417)
Q Consensus 21 g~~nDa~~m~~~L~~~~Gf--~~~-dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~ 88 (417)
+...=.+.++++|.+.+|+ +++ +| +++.. ..+.|..++..+ .++||.+++.--+|..
T Consensus 68 g~~~l~~~la~~l~~~~g~~~~~~~~v-~~~~g-------~~~a~~~~~~~~---~~~gd~vl~~~p~~~~ 127 (386)
T 1u08_A 68 GVQALREAIAQKTERLYGYQPDADSDI-TVTAG-------ATEALYAAITAL---VRNGDEVICFDPSYDS 127 (386)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCTTTTE-EEESS-------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCE-EEcCC-------hHHHHHHHHHHh---CCCCCEEEEeCCCchh
Confidence 3344445677777665675 454 55 44542 344555555555 4689988877666653
No 31
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=39.49 E-value=35 Score=33.21 Aligned_cols=67 Identities=9% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCCeEEeecCCCCCcccccCCCCCCcchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CCCCCCCCCCC
Q 041177 334 PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQ----GFTQQPGLYCH 407 (417)
Q Consensus 334 ~~~~il~SGC~d~qtSaDa~~~g~~~~a~GA~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~~----~y~Q~PqL~~s 407 (417)
++|-++.-.......|.+-.. .+.-|..+++++|+++.....-.+||.++|..+... +..| |+..++
T Consensus 230 ~aD~Li~yST~pG~vS~R~~~------~GSwFIq~L~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~kQ-P~~~st 300 (316)
T 2fp3_A 230 LADTLVCYANTPGYVTHRDLD------TGSWYIQKFCQVMADHAHDTDLEDILKKTSEAVGNKRTKKGSMQ-TGAYDN 300 (316)
T ss_dssp CCSEEEEECCCSCCCBTTTBC------HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHSSSSSCSSSC-CCEEEE
T ss_pred CCCEEEEEeCCCCceeccCCC------CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhccCCCcc-ceEEeE
Confidence 455555555555666654332 334588999999998433469999999999988752 2358 987664
No 32
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=39.35 E-value=28 Score=28.31 Aligned_cols=44 Identities=7% Similarity=0.162 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------CCCCCCCCCCC
Q 041177 364 ALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQ----------GFTQQPGLYCH 407 (417)
Q Consensus 364 A~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~~----------~y~Q~PqL~~s 407 (417)
=|-.+++++|+++.....-.+||.+++...... +.+|+|+..++
T Consensus 38 wFIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~~~~~~kQ~P~~~st 91 (105)
T 1pyo_B 38 WYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPGTEFHRCKEMSEYCST 91 (105)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHTCCCCCTTSTTTTCBCCCEEEEC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhccCCCccccCceECCEeEEe
Confidence 378889999998544569999999999988742 23788887554
No 33
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=39.24 E-value=34 Score=32.06 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCC--CCC------
Q 041177 25 DVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAE--TGE------ 96 (417)
Q Consensus 25 Da~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~--~G~------ 96 (417)
....+++.|.+.+|.++++|. ++.. +.+.|..++..+ .++||.+++---+|....... .|.
T Consensus 68 ~~~~lr~~la~~~~~~~~~v~-~~~g-------~t~a~~~~~~~~---~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~ 136 (363)
T 3ffh_A 68 WASSLRKEVADFYQLEEEELI-FTAG-------VDELIELLTRVL---LDTTTNTVMATPTFVQYRQNALIEGAEVREIP 136 (363)
T ss_dssp -CHHHHHHHHHHHTCCGGGEE-EESS-------HHHHHHHHHHHH---CSTTCEEEEEESSCHHHHHHHHHHTCEEEEEE
T ss_pred chHHHHHHHHHHhCCChhhEE-EeCC-------HHHHHHHHHHHH---ccCCCEEEEcCCChHHHHHHHHHcCCEEEEec
Confidence 346778888877888777754 4442 344555555554 468898887655554210000 000
Q ss_pred -CCCCCCc------------ceee---cCCCC--CCCHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 041177 97 -DDDTGYD------------ECIV---PSDMN--LITDDDFREFVDQIPPGCEITVVSDSCHSG 142 (417)
Q Consensus 97 -de~dG~d------------e~lv---P~D~~--~Is~~el~~ll~~l~~g~~l~iILDcChSG 142 (417)
++..+.| -.++ |..-. .++.+++..+++..+. .+++|+|.+|++
T Consensus 137 ~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~--~~~li~De~~~~ 198 (363)
T 3ffh_A 137 LLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPS--DVLVVLDEAYIE 198 (363)
T ss_dssp CCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT--TSEEEEECTTGG
T ss_pred CCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC--CcEEEEeCchHh
Confidence 0000011 0111 11111 3567788888876653 678899999984
No 34
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=34.52 E-value=31 Score=32.56 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcC--CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCC
Q 041177 24 NDVKRMYACLVDRYG--FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHG 87 (417)
Q Consensus 24 nDa~~m~~~L~~~~G--f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG 87 (417)
.-.+.++++|.+.+| .++++|. ++.. ..+.+..++..+ .++||.+++---+|.
T Consensus 66 ~l~~~la~~l~~~~g~~~~~~~i~-~~~g-------~~~a~~~~~~~l---~~~gd~vl~~~~~~~ 120 (391)
T 3dzz_A 66 EYYKAVADWEEIEHRARPKEDWCV-FASG-------VVPAISAMVRQF---TSPGDQILVQEPVYN 120 (391)
T ss_dssp HHHHHHHHHHHHHHSCCCCGGGEE-EESC-------HHHHHHHHHHHH---SCTTCEEEECSSCCH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEE-ECCC-------HHHHHHHHHHHh---CCCCCeEEECCCCcH
Confidence 344567777777777 4555654 4442 345566666655 568998887655554
No 35
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=34.31 E-value=60 Score=30.65 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCC
Q 041177 27 KRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGT 88 (417)
Q Consensus 27 ~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~ 88 (417)
..+++.|.+.++.++++| +++.. ..+.|..++..+ .++||.+++.--+|..
T Consensus 64 ~~l~~~la~~~~~~~~~v-~~~~g-------~~~a~~~~~~~~---~~~gd~Vl~~~~~~~~ 114 (381)
T 1v2d_A 64 PALREALAEEFAVEPESV-VVTSG-------ATEALYVLLQSL---VGPGDEVVVLEPFFDV 114 (381)
T ss_dssp HHHHHHHHHHHTSCGGGE-EEESS-------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred HHHHHHHHHhcCCChhhE-EEcCC-------hHHHHHHHHHHh---CCCCCEEEEcCCCchh
Confidence 456666666677776674 45542 344566666655 4689988776656643
No 36
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=31.03 E-value=1.4e+02 Score=28.56 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEEEeCCCCCcC
Q 041177 113 LITDDDFREFVDQIPPGCEITVVSDSCHSGGL 144 (417)
Q Consensus 113 ~Is~~el~~ll~~l~~g~~l~iILDcChSG~~ 144 (417)
.++.+++.++++-... ..+++|+|.+|++..
T Consensus 197 ~~~~~~l~~l~~~~~~-~~~~li~De~~~~~~ 227 (404)
T 2o1b_A 197 TATKEVFDEAIAKFKG-TDTKIVHDFAYGAFG 227 (404)
T ss_dssp CCCHHHHHHHHHHHTT-SSCEEEEECTTTTCB
T ss_pred cCCHHHHHHHHHHHHH-cCCEEEEEccchhcc
Confidence 3566778777776654 467899999999743
No 37
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=29.73 E-value=2.3e+02 Score=26.07 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCC
Q 041177 21 GCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGT 88 (417)
Q Consensus 21 g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~ 88 (417)
++......+++.|.+.+|.++++|.+... +.+.|..++..+ .++||.+++--.+|..
T Consensus 48 y~~~~~~~l~~~la~~~~~~~~~i~~~~g--------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~ 104 (354)
T 3ly1_A 48 YAKNEILMLGNKLAAHHQVEAPSILLTAG--------SSEGIRAAIEAY---ASLEAQLVIPELTYGD 104 (354)
T ss_dssp CCHHHHHHHHHHHHHHTTSCGGGEEEESH--------HHHHHHHHHHHH---CCTTCEEEEESSSCTH
T ss_pred CCCCchHHHHHHHHHHhCCChHHEEEeCC--------hHHHHHHHHHHH---hCCCCeEEECCCCchH
Confidence 34445677888888888887777654433 334555555544 4689988877666653
No 38
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=29.69 E-value=86 Score=32.14 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=29.1
Q ss_pred CCCCcHHHHHHH--HHHHHHhCCCCCEEEEEeeCCCCC
Q 041177 54 STQPTGRNIRRA--LGNLVRSAEPGDVLFVHYSGHGTR 89 (417)
Q Consensus 54 ~~~pTr~nI~~a--L~~Lv~~a~pgD~l~fYFSGHG~~ 89 (417)
++.|+...+..+ +.++++.+.++|.|+|..||=|.-
T Consensus 98 HPvPD~~s~~Aa~~il~~~~~l~~~Dlvl~LISGGGSA 135 (440)
T 1x3l_A 98 HPIPDEKSILGAKEALSILNRARENDIVFILISGGGSA 135 (440)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHCCTTSEEEEEECTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHH
Confidence 467888777655 557889999999999999998753
No 39
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=27.54 E-value=75 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcC--CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCC
Q 041177 27 KRMYACLVDRYG--FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGH 86 (417)
Q Consensus 27 ~~m~~~L~~~~G--f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGH 86 (417)
+.++++|.+.+| .++++|. ++.. ..+.|..++..+ .+|||.+++.--+|
T Consensus 73 ~~la~~l~~~~g~~~~~~~v~-~t~g-------~~~a~~~~~~~l---~~~gd~vl~~~p~~ 123 (399)
T 1c7n_A 73 KTVKKWMKDRHQWDIQTDWII-NTAG-------VVPAVFNAVREF---TKPGDGVIIITPVY 123 (399)
T ss_dssp HHHHHHHHHHHCCCCCGGGEE-EESS-------HHHHHHHHHHHH---CCTTCEEEECSSCC
T ss_pred HHHHHHHHHHhCCCCChhhEE-EcCC-------HHHHHHHHHHHh---cCCCCEEEEcCCCc
Confidence 455666655567 4555654 4542 344565566555 46789877754444
No 40
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=27.07 E-value=1.3e+02 Score=30.54 Aligned_cols=73 Identities=25% Similarity=0.387 Sum_probs=40.6
Q ss_pred CeEEEEEeeCCCCCCCC-CcchHHHHHHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEE
Q 041177 2 TKKAVLIGINYPGTKAE-LKGCVNDVKRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLF 80 (417)
Q Consensus 2 ~r~ALlIGINY~~~~~~-L~g~~nDa~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~ 80 (417)
|+++++|+=+-.....+ -.--..+.+.+++.+.. +++- +|..+.|. .++.++|.++|+. . .++
T Consensus 142 r~~~l~ia~~~~~~~~d~G~~~~~~~~~~~~~~~~-~~~~--~v~k~ydp-----~~~~~~I~~~ln~---G-----~~i 205 (435)
T 1cvr_A 142 LGQALCIASAEGGPSADNGESDIQHENVIANLLTQ-YGYT--KIIKCYDP-----GVTPKNIIDAFNG---G-----ISL 205 (435)
T ss_dssp TTEEEEEECSCBCTTSGGGCBHHHHHHHHHHHHHH-HTCS--EEEEEESS-----SCCHHHHHHHHHH---C-----CSE
T ss_pred hceEEEEecCCCCcccccchhhhhHHHHHHhhhhc-CCcc--eeEEecCC-----ccCHHHHHHHHhC---C-----CeE
Confidence 57888888532110000 01124555666666653 4542 35455553 3677777766542 2 468
Q ss_pred EEeeCCCCCC
Q 041177 81 VHYSGHGTRL 90 (417)
Q Consensus 81 fYFSGHG~~~ 90 (417)
+.|.|||...
T Consensus 206 vnY~GHG~~~ 215 (435)
T 1cvr_A 206 VNYTGHGSET 215 (435)
T ss_dssp EEEESCBCSS
T ss_pred EEEecCCCcc
Confidence 8888999753
No 41
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=26.92 E-value=99 Score=29.90 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCCCC--------ccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCCCCCCCCCC
Q 041177 26 VKRMYACLVDRYGFSE--------ENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHGTRLPAETGED 97 (417)
Q Consensus 26 a~~m~~~L~~~~Gf~~--------~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG~~~~d~~G~d 97 (417)
-++++++|.+.+|.+. .+-++++.. ..+.|..++..+ .+|||.+++-=-+|.......
T Consensus 84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G-------~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~---- 149 (425)
T 2r2n_A 84 LSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSG-------SQQGLCKVFEMI---INPGDNVLLDEPAYSGTLQSL---- 149 (425)
T ss_dssp HHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESS-------HHHHHHHHHHHH---CCTTCEEEEESSCCHHHHHHH----
T ss_pred HHHHHHHHHHhcCCCCccccccCCcCcEEEeCc-------HHHHHHHHHHHh---CCCCCEEEEeCCCcHHHHHHH----
Confidence 4678888877778764 123455542 344555555555 468998888655553321100
Q ss_pred CCCCCcceeecCCCCCCCHHHHHHHHHhCC---------CCCeEEEEEeCCCCC
Q 041177 98 DDTGYDECIVPSDMNLITDDDFREFVDQIP---------PGCEITVVSDSCHSG 142 (417)
Q Consensus 98 e~dG~de~lvP~D~~~Is~~el~~ll~~l~---------~g~~l~iILDcChSG 142 (417)
...|..-..+|.|.+.+..++|...++..+ ...+++++.-.+|.-
T Consensus 150 ~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NP 203 (425)
T 2r2n_A 150 HPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNP 203 (425)
T ss_dssp GGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTT
T ss_pred HHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCC
Confidence 111233334565544566778888887432 234555555666653
No 42
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=26.35 E-value=76 Score=30.01 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEEeCCCCCcC
Q 041177 114 ITDDDFREFVDQIPPGCEITVVSDSCHSGGL 144 (417)
Q Consensus 114 Is~~el~~ll~~l~~g~~l~iILDcChSG~~ 144 (417)
++.+++..+++-..+ ..+++|+|.+|++..
T Consensus 178 ~~~~~l~~l~~~~~~-~~~~li~De~~~~~~ 207 (391)
T 3h14_A 178 LDHAAMGALIEAAQA-QGASFISDEIYHGIE 207 (391)
T ss_dssp CCHHHHHHHHHHHHH-TTCEEEEECTTTTCB
T ss_pred CCHHHHHHHHHHHHH-cCCEEEEECcchhcc
Confidence 566677776665543 457899999998644
No 43
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=25.86 E-value=1.1e+02 Score=29.05 Aligned_cols=51 Identities=24% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcC--CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCC
Q 041177 26 VKRMYACLVDRYG--FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHG 87 (417)
Q Consensus 26 a~~m~~~L~~~~G--f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG 87 (417)
.+.+++++.+.+| .++++| +++.. ..+.|..++..+ .++||.+++---+|.
T Consensus 81 ~~~la~~~~~~~g~~~~~~~v-~~t~g-------~t~a~~~~~~~~---~~~gd~vl~~~p~~~ 133 (407)
T 2zc0_A 81 REELAAFLKKYDHLEVSPENI-VITIG-------GTGALDLLGRVL---IDPGDVVITENPSYI 133 (407)
T ss_dssp HHHHHHHHHHHSCCCCCGGGE-EEESH-------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred HHHHHHHHHHhcCCCCCcceE-EEecC-------HHHHHHHHHHHh---cCCCCEEEEeCCChH
Confidence 3455556654457 345554 34431 234455555555 357897776554443
No 44
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=25.52 E-value=82 Score=30.43 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcC---CCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCC
Q 041177 24 NDVKRMYACLVDRYG---FSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHG 87 (417)
Q Consensus 24 nDa~~m~~~L~~~~G---f~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG 87 (417)
.=.+.++++|.+++| .++++|. ++.. ..+.|..++..+ .++||.+++---+|.
T Consensus 89 ~lr~~la~~l~~~~g~~~~~~~~v~-~t~G-------~~~al~~~~~~l---~~~gd~Vl~~~p~y~ 144 (425)
T 1vp4_A 89 VLKQQILKLLERMYGITGLDEDNLI-FTVG-------SQQALDLIGKLF---LDDESYCVLDDPAYL 144 (425)
T ss_dssp HHHHHHHHHHHHHHCCCSCCGGGEE-EEEH-------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred HHHHHHHHHHHhccCCCCCCcccEE-Eecc-------HHHHHHHHHHHh---CCCCCEEEEeCCCcH
Confidence 334566667765558 4455654 4431 344555555555 468998877655554
No 45
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=25.06 E-value=74 Score=29.83 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHHHHHhhc-CCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCC
Q 041177 27 KRMYACLVDRY-GFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHG 87 (417)
Q Consensus 27 ~~m~~~L~~~~-Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG 87 (417)
..+++.|.+.+ +.++++|.+... ..+.+..++..+ .+|||.+++.--+|.
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g--------~~~a~~~~~~~l---~~~gd~Vl~~~~~~~ 116 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNG--------ATGANLLVLYSL---IEPGDHVISLYPTYQ 116 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESH--------HHHHHHHHHHHH---CCTTCEEEEEESSCT
T ss_pred HHHHHHHHHHhccCChhhEEEcCC--------hHHHHHHHHHHh---cCCCCEEEEeCCCch
Confidence 34666666544 456666543332 234455555555 568999888777775
No 46
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=24.98 E-value=64 Score=26.83 Aligned_cols=44 Identities=7% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------CCCCCCCCCCC
Q 041177 364 ALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQ----------GFTQQPGLYCH 407 (417)
Q Consensus 364 A~s~a~~~~l~~~~~~~s~~~ll~~~R~~L~~~----------~y~Q~PqL~~s 407 (417)
-|-.+++.+|++......-.+|+.++....... +.+|+|+..++
T Consensus 39 wFIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va~~~~~~~~~~~~~~KQmP~~~st 92 (117)
T 3rjm_B 39 WYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPGTEFHRCKEMSEYCST 92 (117)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCCCCTTSTTTTCBCCCEEEEC
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccCCCCccCCeEEeeEEEEe
Confidence 467788899988654568999999999888742 36799987643
No 47
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=24.12 E-value=1.8e+02 Score=26.84 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHh----------CCCCCEEEEEeeCCCCCCCCCCCC
Q 041177 27 KRMYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRS----------AEPGDVLFVHYSGHGTRLPAETGE 96 (417)
Q Consensus 27 ~~m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~----------a~pgD~l~fYFSGHG~~~~d~~G~ 96 (417)
..+++.|.+.+|.++++|. ++.. ..+.+..++..+... ..++|.+++--.+|.......
T Consensus 72 ~~l~~~la~~~~~~~~~i~-~~~g-------gt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~--- 140 (397)
T 3f9t_A 72 EKAVALLGSLLNNKDAYGH-IVSG-------GTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGR--- 140 (397)
T ss_dssp HHHHHHHHHHTTCTTCEEE-EESC-------HHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHH---
T ss_pred HHHHHHHHHHhCCCCCCEE-EecC-------cHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHH---
Confidence 4677788878888876654 5542 234466666655443 246899999888887543210
Q ss_pred CCCCCCcceeecCCCC-CCCHHHHHHHHHh
Q 041177 97 DDDTGYDECIVPSDMN-LITDDDFREFVDQ 125 (417)
Q Consensus 97 de~dG~de~lvP~D~~-~Is~~el~~ll~~ 125 (417)
..-|..-..+|.|.+ .+..++|.+.+++
T Consensus 141 -~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 169 (397)
T 3f9t_A 141 -EMMDLEYIYAPIKEDYTIDEKFVKDAVED 169 (397)
T ss_dssp -HHHTCEEEEECBCTTSSBCHHHHHHHHHH
T ss_pred -HHcCceeEEEeeCCCCcCCHHHHHHHHhh
Confidence 011233345666544 3567778777766
No 48
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=23.66 E-value=1.2e+02 Score=29.93 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCC-CCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCC
Q 041177 26 VKRMYACLVDRYGF-SEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGH 86 (417)
Q Consensus 26 a~~m~~~L~~~~Gf-~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGH 86 (417)
.+.+++++.+.+|. ++++| +++.. ..+.|..+++.+ .++||.+++---+|
T Consensus 124 r~~ia~~~~~~~g~~~~~~v-~~t~G-------~~~al~~~~~~l---~~~Gd~Vlv~~p~y 174 (448)
T 3aow_A 124 RETLMKWLGKRYGISQDNDI-MITSG-------SQQALDLIGRVF---LNPGDIVVVEAPTY 174 (448)
T ss_dssp HHHHHHHHHHHHCCCTTSEE-EEESS-------HHHHHHHHHHHH---CCTTCEEEEEESCC
T ss_pred HHHHHHHHHHhcCcCChhhE-EEeCc-------HHHHHHHHHHHH---cCCCCEEEEeCCCh
Confidence 34566666555587 55554 44542 334555555555 46899887755444
No 49
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=22.91 E-value=40 Score=26.71 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041177 377 DGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNH 410 (417)
Q Consensus 377 ~~~~s~~~ll~~~R~~L~~~~y~Q~PqL~~s~~~ 410 (417)
|..++|.+|..++++.|+-+ .+.-||+..|++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~--~~~~~LsYk~~~ 52 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELR--LEHTKLSYRPRD 52 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCC--GGGCCEEECCTT
T ss_pred CCCCCHHHHHHHHHHHhCCC--cceeEEEeeCCC
Confidence 33479999999999999754 677799988874
No 50
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=21.68 E-value=51 Score=28.36 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.7
Q ss_pred HHHhCCCCCEEEEEeeCC
Q 041177 69 LVRSAEPGDVLFVHYSGH 86 (417)
Q Consensus 69 Lv~~a~pgD~l~fYFSGH 86 (417)
.++..++||.+|||-|+=
T Consensus 31 ~lr~mk~GD~~~fYhs~~ 48 (145)
T 2hd9_A 31 TLSRVKPGDKLVIYVRQE 48 (145)
T ss_dssp HHTTCCTTCEEEEEECCE
T ss_pred HHHhCCCCCEEEEEEccc
Confidence 345788999999999964
No 51
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=21.40 E-value=1e+02 Score=29.24 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCCccEEEeecCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCC
Q 041177 29 MYACLVDRYGFSEENITVLIDTDDRSTQPTGRNIRRALGNLVRSAEPGDVLFVHYSGHG 87 (417)
Q Consensus 29 m~~~L~~~~Gf~~~dI~vL~D~~~~~~~pTr~nI~~aL~~Lv~~a~pgD~l~fYFSGHG 87 (417)
+++.|.+.+|.++++|. ++.. +.+.|..++..+ .++||.+++---+|.
T Consensus 79 l~~~la~~~g~~~~~v~-~~~g-------~~~al~~~~~~~---~~~gd~Vl~~~p~y~ 126 (397)
T 2zyj_A 79 LRAFVAEWIGVRPEEVL-ITTG-------SQQALDLVGKVF---LDEGSPVLLEAPSYM 126 (397)
T ss_dssp HHHHHHHHHTSCGGGEE-EESH-------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred HHHHHHHHhCCChhhEE-Eecc-------HHHHHHHHHHHh---CCCCCEEEEeCCCcH
Confidence 44444444565555544 4431 334555555554 468898777544443
No 52
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Probab=20.62 E-value=91 Score=31.83 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=33.3
Q ss_pred ccEEEeecCCCCCCCCcHHHHHHH--HHHHHHhCCCCCEEEEEeeCCCCC
Q 041177 42 ENITVLIDTDDRSTQPTGRNIRRA--LGNLVRSAEPGDVLFVHYSGHGTR 89 (417)
Q Consensus 42 ~dI~vL~D~~~~~~~pTr~nI~~a--L~~Lv~~a~pgD~l~fYFSGHG~~ 89 (417)
..|.++.-. ++.|+...+..+ +.++++.+.++|.|+|..||=|.-
T Consensus 93 ~~i~v~eA~---HPvPD~~s~~Aa~~il~l~~~l~~~Dlvl~LISGGGSA 139 (429)
T 2b8n_A 93 DDFEIYEAG---HPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSS 139 (429)
T ss_dssp TTCEEEEEC---SSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHH
T ss_pred CceEEEECC---CCCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHH
Confidence 355555532 457887777655 557889999999999999997753
Done!