BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041178
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 178 bits (452), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 184/591 (31%), Positives = 260/591 (43%), Gaps = 84/591 (14%)
Query: 120 FGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQ------ 173
F T P +G+ S LQHLD+ N+L+G I +L+ L NQ GPIP
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271
Query: 174 ------------EI-----GQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXF 216
EI G + L L N+ YG +PP G
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 217 DSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLS-NLGILYLYSNSLSGPI-PSVIGN 273
+P+ L ++ + LDLS N+ SG +P SL NLS +L L L SN+ SGPI P++ N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 274 LESLLQ-LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI 332
++ LQ L L N +G IP +L N S L + L N LS IP LG+L L L L +
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 333 NQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIG 392
N L G IP +E+ Y+K++ L L N L G IP +
Sbjct: 452 NMLEGEIP------------------------QELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
N T L +++ N L+G IPK + L +L ++ + N+ SG + G +L +LDL+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN--HIVGEIPVQ 510
N F G I F + G ++ N I+G + I + + N G Q
Sbjct: 548 NLFNGTIPAAM--FKQSGK--IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
L +L + N ++ G + + +LD+S N L +IPK IG++ L LNL
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
+N IP EV L L+ LDLS N L +P + + L +++L +NNLSG IP
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Query: 631 --FEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCK 679
FE TF A+ N GLCG LP C
Sbjct: 724 GQFE-----------------------TFPPAKFLNNPGLCG--YPLPRCD 749
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 165/578 (28%), Positives = 250/578 (43%), Gaps = 102/578 (17%)
Query: 69 NPCAWVGISCNQAERIISINLSSMGLN---------------------------GTLQEF 101
NPC + G++C + +++ SI+LSS LN G++ F
Sbjct: 38 NPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF 96
Query: 102 AFSSFPHLVHLNLSFNIVFG--TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIG---HLNQ 156
S+ L L+LS N + G T +G+ S L+ L++ +N L P ++ LN
Sbjct: 97 KCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNS 152
Query: 157 LRSLYFDVNQLHGP------IPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXX 210
L L N + G + G+L LA+ N + G + S
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS---RCVNLEFLD 206
Query: 211 XXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSV 270
F + LG+ ++ LD+S N+LSG ++ + L +L + SN GPIP +
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 271 IGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG 329
L+SL L L+EN+ +G IP L G +LT + L N +PP G+ L +L
Sbjct: 267 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 330 LHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPH 389
L N +G +P ++RG
Sbjct: 325 LSSNNFSGELPMDTLL------------------------------------KMRG---- 344
Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRNLT-SLERVRFNQNNLSGKVYEAFGYHPNLTF- 447
L ++++ N SG +P+SL NL+ SL + + NN SG + +P T
Sbjct: 345 -------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 448 -LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE 506
L L N F G+I N +L + +S N +SG+IP +G KL+ L + N + GE
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 507 IPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLR 566
IP +L + +L LIL N L+G +P L + T L ++ LS N+L IPK IG L L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 567 YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604
L LSNN F IP E+ L LDL+ N +P
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 36/471 (7%)
Query: 228 SISTLDLSKNQLSGSIPF--SLGNLSNLGILYLYSNSLSGPIPSVIG-NLESLLQLDLSE 284
S+++LDLS+N LSG + SLG+ S L L + SN+L P G L SL LDLS
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 285 NQLSG-------------------------SIPISLGNLSSLTVMSLFSNSLSSFIPPIL 319
N +SG S + + +L + + SN+ S+ IP L
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FL 219
Query: 320 GNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELC 379
G+ +L L + N+L+G +I +P LKS+ L L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 380 TNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV-YE 437
N+ G IP + G L +++ NH G +P + + LE + + NN SG++ +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNF-PKLGTFIVSMNNISGSIPLEIGESFK--LQ 494
L LDLS N F GE+ + N L T +S NN SG I + ++ K LQ
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW 554
L + +N G+IP L+ L L LS N LSG +P LGSL++L+ L L N L
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
IP+ + + L L L N +IP + +L+ + LS N L E+P I +++L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGN 665
L L +N+ SG IP +L +D++ N G IP + + ++ N
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 61/95 (64%)
Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161
F + ++ L++S+N++ G IP ++G++ L L+LG+N ++G IP E+G L L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP 196
N+L G IPQ + L+++ E+ L +NNL GPIP
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 185/603 (30%), Positives = 264/603 (43%), Gaps = 84/603 (13%)
Query: 120 FGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQ------ 173
F T P +G+ S LQHLD+ N+L+G I +L+ L NQ GPIP
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 268
Query: 174 ------------EI-----GQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXF 216
EI G + L L N+ YG +PP G
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 217 DSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLS-NLGILYLYSNSLSGPI-PSVIGN 273
+P+ L ++ + LDLS N+ SG +P SL NLS +L L L SN+ SGPI P++ N
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 274 LESLLQ-LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI 332
++ LQ L L N +G IP +L N S L + L N LS IP LG+L L L L +
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 333 NQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIG 392
N L G IP +E+ Y+K++ L L N L G IP +
Sbjct: 449 NMLEGEIP------------------------QELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 393 NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452
N T L +++ N L+G IPK + L +L ++ + N+ SG + G +L +LDL+
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN--HIVGEIPVQ 510
N F G I F + G ++ N I+G + I + + N G Q
Sbjct: 545 NLFNGTIPAAM--FKQSGK--IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
L +L + N ++ G + + +LD+S N L +IPK IG++ L LNL
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
+N IP EV L L+ LDLS N L +P + + L +++L +NNLSG IP
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 631 --FEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQAS 688
FE TF A+ N GLCG LP C + A
Sbjct: 721 GQFE-----------------------TFPPAKFLNNPGLCG--YPLPRCDPSNADGYAH 755
Query: 689 RKK 691
++
Sbjct: 756 HQR 758
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 165/578 (28%), Positives = 250/578 (43%), Gaps = 102/578 (17%)
Query: 69 NPCAWVGISCNQAERIISINLSSMGLN---------------------------GTLQEF 101
NPC + G++C + +++ SI+LSS LN G++ F
Sbjct: 35 NPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF 93
Query: 102 AFSSFPHLVHLNLSFNIVFG--TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIG---HLNQ 156
S+ L L+LS N + G T +G+ S L+ L++ +N L P ++ LN
Sbjct: 94 KCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNS 149
Query: 157 LRSLYFDVNQLHGP------IPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXX 210
L L N + G + G+L LA+ N + G + S
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS---RCVNLEFLD 203
Query: 211 XXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSV 270
F + LG+ ++ LD+S N+LSG ++ + L +L + SN GPIP +
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 271 IGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG 329
L+SL L L+EN+ +G IP L G +LT + L N +PP G+ L +L
Sbjct: 264 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 330 LHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPH 389
L N +G +P ++RG
Sbjct: 322 LSSNNFSGELPMDTLL------------------------------------KMRG---- 341
Query: 390 SIGNLTELVLVNMCENHLSGPIPKSLRNLT-SLERVRFNQNNLSGKVYEAFGYHPNLTF- 447
L ++++ N SG +P+SL NL+ SL + + NN SG + +P T
Sbjct: 342 -------LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 448 -LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE 506
L L N F G+I N +L + +S N +SG+IP +G KL+ L + N + GE
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 507 IPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLR 566
IP +L + +L LIL N L+G +P L + T L ++ LS N+L IPK IG L L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 567 YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604
L LSNN F IP E+ L LDL+ N +P
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 36/471 (7%)
Query: 228 SISTLDLSKNQLSGSIPF--SLGNLSNLGILYLYSNSLSGPIPSVIG-NLESLLQLDLSE 284
S+++LDLS+N LSG + SLG+ S L L + SN+L P G L SL LDLS
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 285 NQLSG-------------------------SIPISLGNLSSLTVMSLFSNSLSSFIPPIL 319
N +SG S + + +L + + SN+ S+ IP L
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FL 216
Query: 320 GNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELC 379
G+ +L L + N+L+G +I +P LKS+ L L
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 274
Query: 380 TNRLRGGIPHSI-GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV-YE 437
N+ G IP + G L +++ NH G +P + + LE + + NN SG++ +
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNF-PKLGTFIVSMNNISGSIPLEIGESFK--LQ 494
L LDLS N F GE+ + N L T +S NN SG I + ++ K LQ
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW 554
L + +N G+IP L+ L L LS N LSG +P LGSL++L+ L L N L
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
IP+ + + L L L N +IP + +L+ + LS N L E+P I +++L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGN 665
L L +N+ SG IP +L +D++ N G IP + + ++ N
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 61/95 (64%)
Query: 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161
F + ++ L++S+N++ G IP ++G++ L L+LG+N ++G IP E+G L L L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP 196
N+L G IPQ + L+++ E+ L +NNL GPIP
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 37/295 (12%)
Query: 55 ANATNVSSYSKTKINPC--AWVGISCN---QAERIISINLSSMGLNGTLQEFAFSSFPHL 109
N T +SS+ T + C W+G+ C+ Q R+ +++LS GLN SS +L
Sbjct: 19 GNPTTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLS--GLNLPKPYPIPSSLANL 75
Query: 110 VHLNLSF----NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVN 165
+LN + N + G IPP + L++L +L + + ++G IP + + L +L F N
Sbjct: 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 166 QLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGN 225
L G +P I L + + N + G IP S G
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS---------------------- 173
Query: 226 LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN 285
K +++ +S+N+L+G IP + NL NL + L N L G + G+ ++ ++ L++N
Sbjct: 174 -KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 286 QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
L+ + +G +L + L +N + +P L LK L +L + N L G IP
Sbjct: 232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 119/294 (40%), Gaps = 51/294 (17%)
Query: 387 IPHSIGNLTELVLVNMCE-NHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNL 445
IP S+ NL L + + N+L GPIP ++ LT L + N+SG + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 446 TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKL-QVLDISSNHIV 504
LD S N G + + + P L N ISG+IP G KL + IS N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 505 GEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564
G+IP A L +L + LS N L G GS Q + L+ N L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----------FD 236
Query: 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624
L + LS N L+ LDL N + +P + +K L LN+ NNL
Sbjct: 237 LGKVGLSKN---------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 625 GFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSC 678
G IP+ NL D+S NK LCG+ LP+C
Sbjct: 282 GEIPQ----GGNLQRFDVS-----------------AYANNKCLCGS--PLPAC 312
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 9/204 (4%)
Query: 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG 440
N L G IP +I LT+L + + ++SG IP L + +L + F+ N LSG + +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 441 YHPNLTFLDLSQNNFYGEISFNWRNFPKLGT-FIVSMNNISGSIPLEIGESFKLQVLDIS 499
PNL + N G I ++ +F KL T +S N ++G IP + L +D+S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLS 205
Query: 500 SNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL---TELQYLDLSANKLRSWIP 556
N + G+ V + K+ L+ N L+ F+LG + L LDL N++ +P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 557 KSIGNLLKLRYLNLSNNQFIQKIP 580
+ + L L LN+S N +IP
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 6/223 (2%)
Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
+P I L + L + + G IP + + LV ++ N LSG +P S+ +L +L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 423 RVRFNQNNLSGKVYEAFGYHPNL-TFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
+ F+ N +SG + +++G L T + +S+N G+I + N L +S N + G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Query: 482 SIPLEIGESFKLQVLDISSNHIVGEI-PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
+ G Q + ++ N + ++ V L+K +LN L L N++ G +P L L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV 583
L L++S N L IP+ GNL + +NN+ + P+
Sbjct: 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 24/219 (10%)
Query: 219 IPLVLGNLKSISTLDLSK-NQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL 277
IP L NL ++ L + N L G IP ++ L+ L LY+ ++SG IP + +++L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 278 LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL-SALGLHINQLN 336
+ LD S N LSG++P S+ +L +L ++ N +S IP G+ L +++ + N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 337 GVIP----------------------SSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIF 374
G IP S + F ++G K++
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPK 413
L+L NR+ G +P + L L +N+ N+L G IP+
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
HL +L+F++ +VG L LDL NN++ G +P + L L SL N L
Sbjct: 227 HLAKNSLAFDLG------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 168 HGPIPQ 173
G IPQ
Sbjct: 281 CGEIPQ 286
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 38/284 (13%)
Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
+ + YL ++ ++ N+L P + NLT+LV + M N ++ P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIP 484
N ++ + NL L+LS N +IS L S N ++ P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFSSNQVTDLKP 168
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
L L+ LDISSN V +I V LAKL +L LI + NQ+S P LG LT L L
Sbjct: 169 L--ANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE--------------------VE 584
L+ N+L+ ++ +L L L+L+NNQ P+ +
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 280
Query: 585 KLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L P I N+K+L L L NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 165/391 (42%), Gaps = 79/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL + +N L+ P + NL L+ + ++ NQ++ P L NL++LT ++LF+N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
++ P L NL +L+ L L N ++ + +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
L S+ +L +N++ P + NLT L +++ N +S L LT+LE + N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
+S G NL E+S N +GT + S+ N++
Sbjct: 206 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 243
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
LD+++N I P L+ L L +L L NQ+S P L LT L L+L+ N
Sbjct: 244 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
+L P I NL L YL L N P V L L +L S N + + N
Sbjct: 294 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVS--SLAN 347
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
+ ++ L+ HN +S P + NL+ I
Sbjct: 348 LTNINWLSAGHNQISDLTP-----LANLTRI 373
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 177/428 (41%), Gaps = 109/428 (25%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L ++ NNQLT + P + +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------------- 102
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
L NL +++ L L NQ++ P L N
Sbjct: 103 ---------------------------------LANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL L L SN++S S + L SL QL S NQ++ P L NL++L + + SN
Sbjct: 128 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
+S +L L +L +L NQ++ + P +G
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP--------------------------LGI 215
Query: 370 LKSIFELELCTNRLRG-GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L ++ EL L N+L+ G S+ NLT+L L N N +S P L LT L ++
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN---NQISNLAP--LSGLTKLTELKLGA 270
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLE 486
N +S LT L+L++N +IS N +N L + NNIS P
Sbjct: 271 NQISN--ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLY---FNNISDISP-- 322
Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
+ KLQ L S+N V ++ LA L ++N L NQ+S P L +LT + L L
Sbjct: 323 VSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Query: 547 SANKLRSW 554
+ ++W
Sbjct: 379 ND---QAW 383
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 145/327 (44%), Gaps = 50/327 (15%)
Query: 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
+L +N S N + P + NL+KL + + NNQ+ + P + +L L L NQ+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 168 HGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLK 227
P + L+ +N L L N + +L D P L NL
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 228 SISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
++ LD+S N++S S+ L L+NL L +N +S P +G L +L +L L+ NQ
Sbjct: 174 TLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXX 346
L +L +L++LT + L +N +S+ P L L L+ L L NQ++ + P
Sbjct: 229 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP------ 278
Query: 347 XXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
+ L ++ LEL N+L P I NL L + + N+
Sbjct: 279 --------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 316
Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSG 433
+S P S +LT L+R+ F+ N +S
Sbjct: 317 ISDISPVS--SLTKLQRLFFSNNKVSD 341
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 60/205 (29%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186
+ +L+ L LDL NNQ++ + P + L +L L NQ+ P + L+ + L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 187 CHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
N L P
Sbjct: 291 NENQLEDISP-------------------------------------------------- 300
Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
+ NL NL L LY N++S P + +L L +L S N++S SL NL+++ +S
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSA 356
Query: 307 FSNSLSSFIPPILGNLKSLSALGLH 331
N +S P L NL ++ LGL+
Sbjct: 357 GHNQISDLTP--LANLTRITQLGLN 379
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 38/284 (13%)
Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
+ + YL ++ ++ N+L P + NLT+LV + M N ++ P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIP 484
N ++ + NL L+LS N +IS L S N ++ P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFSSNQVTDLKP 168
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
L L+ LDISSN V +I V LAKL +L LI + NQ+S P LG LT L L
Sbjct: 169 L--ANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE--------------------VE 584
L+ N+L+ ++ +L L L+L+NNQ P+ +
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 280
Query: 585 KLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L P I N+K+L L L NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 166/391 (42%), Gaps = 79/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL + +N L+ P + NL L+ + ++ NQ++ P L NL++LT ++LF+N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
++ P L NL +L+ L L N ++ + +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
L S+ +L +N++ P + NLT L +++ N +S L LT+LE + N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
+S G NL E+S N +GT + S+ N++
Sbjct: 206 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 243
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
LD+++N I P L+ L L +L L NQ+S P L LT L L+L+ N
Sbjct: 244 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
+L P I NL L YL L N P V L L +L YN ++ + N
Sbjct: 294 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLAN 347
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
+ ++ L+ HN +S P + NL+ I
Sbjct: 348 LTNINWLSAGHNQISDLTP-----LANLTRI 373
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 176/428 (41%), Gaps = 109/428 (25%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L ++ NNQLT + P + +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------------- 102
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
L NL +++ L L NQ++ P L N
Sbjct: 103 ---------------------------------LANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL L L SN++S S + L SL QL S NQ++ P L NL++L + + SN
Sbjct: 128 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
+S +L L +L +L NQ++ + P +G
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP--------------------------LGI 215
Query: 370 LKSIFELELCTNRLRG-GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L ++ EL L N+L+ G S+ NLT+L L N N +S P L LT L ++
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN---NQISNLAP--LSGLTKLTELKLGA 270
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLE 486
N +S LT L+L++N +IS N +N L + NNIS P
Sbjct: 271 NQISN--ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLY---FNNISDISP-- 322
Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
+ KLQ L +N V ++ LA L ++N L NQ+S P L +LT + L L
Sbjct: 323 VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Query: 547 SANKLRSW 554
+ ++W
Sbjct: 379 ND---QAW 383
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 144/327 (44%), Gaps = 50/327 (15%)
Query: 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
+L +N S N + P + NL+KL + + NNQ+ + P + +L L L NQ+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 168 HGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLK 227
P + L+ +N L L N + +L D P L NL
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 228 SISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
++ LD+S N++S S+ L L+NL L +N +S P +G L +L +L L+ NQ
Sbjct: 174 TLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXX 346
L +L +L++LT + L +N +S+ P L L L+ L L NQ++ + P
Sbjct: 229 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP------ 278
Query: 347 XXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
+ L ++ LEL N+L P I NL L + + N+
Sbjct: 279 --------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 316
Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSG 433
+S P S +LT L+R+ F N +S
Sbjct: 317 ISDISPVS--SLTKLQRLFFYNNKVSD 341
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 36/180 (20%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186
+ +L+ L LDL NNQ++ + P + L +L L NQ+ P + L+ + L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 187 CHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
N L P + NLK+++ L L N +S P S
Sbjct: 291 NENQLEDISP--------------------------ISNLKNLTYLTLYFNNISDISPVS 324
Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
+L+ L L+ Y+N +S S + NL ++ L NQ+S P L NL+ +T + L
Sbjct: 325 --SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 129/284 (45%), Gaps = 38/284 (13%)
Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
+ + YL ++ ++ N+L P + NLT+LV + M N ++ P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIP 484
N ++ + NL L+LS N +IS L S N ++ P
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLNFSSNQVTDLKP 168
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
L L+ LDISSN V +I V LAKL +L LI + NQ+S P LG LT L L
Sbjct: 169 L--ANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDEL 222
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE--------------------VE 584
L+ N+L+ ++ +L L L+L+NNQ P+ +
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 280
Query: 585 KLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628
L L+ L+L+ N L P I N+K+L L L NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 166/391 (42%), Gaps = 79/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL + +N L+ P + NL L+ + ++ NQ++ P L NL++LT ++LF+N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
++ P L NL +L+ L L N ++ + +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
L S+ +L +N++ P + NLT L +++ N +S L LT+LE + N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 205
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
+S G NL E+S N +GT + S+ N++
Sbjct: 206 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 243
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
LD+++N I P L+ L L +L L NQ+S P L LT L L+L+ N
Sbjct: 244 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
+L P I NL L YL L N P V L L +L YN ++ + N
Sbjct: 294 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLAN 347
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
+ ++ L+ HN +S P + NL+ I
Sbjct: 348 LTNINWLSAGHNQISDLTP-----LANLTRI 373
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 177/428 (41%), Gaps = 109/428 (25%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L ++ NNQLT + P + +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------------- 102
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
L NL +++ L L NQ++ P L N
Sbjct: 103 ---------------------------------LANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL L L SN++S S + L SL QL+ S NQ++ P L NL++L + + SN
Sbjct: 128 LTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
+S +L L +L +L NQ++ + P +G
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP--------------------------LGI 215
Query: 370 LKSIFELELCTNRLRG-GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L ++ EL L N+L+ G S+ NLT+L L N N +S P L LT L ++
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN---NQISNLAP--LSGLTKLTELKLGA 270
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLE 486
N +S LT L+L++N +IS N +N L + NNIS P
Sbjct: 271 NQISN--ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLY---FNNISDISP-- 322
Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
+ KLQ L +N V ++ LA L ++N L NQ+S P L +LT + L L
Sbjct: 323 VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Query: 547 SANKLRSW 554
+ ++W
Sbjct: 379 ND---QAW 383
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 144/327 (44%), Gaps = 50/327 (15%)
Query: 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
+L +N S N + P + NL+KL + + NNQ+ + P + +L L L NQ+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 168 HGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLK 227
P + L+ +N L L N + +L D P L NL
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLT 173
Query: 228 SISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
++ LD+S N++S S+ L L+NL L +N +S P +G L +L +L L+ NQ
Sbjct: 174 TLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXX 346
L +L +L++LT + L +N +S+ P L L L+ L L NQ++ + P
Sbjct: 229 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP------ 278
Query: 347 XXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
+ L ++ LEL N+L P I NL L + + N+
Sbjct: 279 --------------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 316
Query: 407 LSGPIPKSLRNLTSLERVRFNQNNLSG 433
+S P S +LT L+R+ F N +S
Sbjct: 317 ISDISPVS--SLTKLQRLFFYNNKVSD 341
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 36/180 (20%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186
+ +L+ L LDL NNQ++ + P + L +L L NQ+ P + L+ + L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 187 CHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
N L P + NLK+++ L L N +S P S
Sbjct: 291 NENQLEDISP--------------------------ISNLKNLTYLTLYFNNISDISPVS 324
Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
+L+ L L+ Y+N +S S + NL ++ L NQ+S P L NL+ +T + L
Sbjct: 325 --SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 129/290 (44%), Gaps = 51/290 (17%)
Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
+ + YL ++ ++ N+L P + NLT+LV + M N ++ P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQNN------FYGEISFNWRNFPKLGTFIVSMNN 478
N ++ + NL L+LS N G S NF T + + N
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLAN 170
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
++ L+ LDISSN V +I V LAKL +L LI + NQ+S P LG L
Sbjct: 171 LT-----------TLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGIL 215
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE---------------- 582
T L L L+ N+L+ ++ +L L L+L+NNQ P+
Sbjct: 216 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 273
Query: 583 ----VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628
+ L L+ L+L+ N L P I N+K+L L L NN+S P
Sbjct: 274 NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 164/391 (41%), Gaps = 80/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL + +N L+ P + NL L+ + ++ NQ++ P L NL++LT ++LF+N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
++ P L NL +L+ L L N ++ + +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
L S+ +L N++ P + NLT L +++ N +S L LT+LE + N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 204
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
+S G NL E+S N +GT + S+ N++
Sbjct: 205 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 242
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
LD+++N I P L+ L L +L L NQ+S P L LT L L+L+ N
Sbjct: 243 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
+L P I NL L YL L N P V L L +L S N + + N
Sbjct: 293 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVS--SLAN 346
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
+ ++ L+ HN +S P + NL+ I
Sbjct: 347 LTNINWLSAGHNQISDLTP-----LANLTRI 372
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 177/428 (41%), Gaps = 110/428 (25%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L ++ NNQLT + P + +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------------- 102
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
L NL +++ L L NQ++ P L N
Sbjct: 103 ---------------------------------LANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL L L SN++S S + L SL QL+ NQ++ P L NL++L + + SN
Sbjct: 128 LTNLNRLELSSNTISD--ISALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
+S +L L +L +L NQ++ + P +G
Sbjct: 183 KVSDI--SVLAKLTNLESLIATNNQISDITP--------------------------LGI 214
Query: 370 LKSIFELELCTNRLRG-GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L ++ EL L N+L+ G S+ NLT+L L N N +S P L LT L ++
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN---NQISNLAP--LSGLTKLTELKLGA 269
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLE 486
N +S LT L+L++N +IS N +N L + NNIS P
Sbjct: 270 NQISN--ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLY---FNNISDISP-- 321
Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
+ KLQ L S+N V ++ LA L ++N L NQ+S P L +LT + L L
Sbjct: 322 VSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Query: 547 SANKLRSW 554
+ ++W
Sbjct: 378 ND---QAW 382
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 132/308 (42%), Gaps = 73/308 (23%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL-A 185
+ NL+ L L L NNQ+T + P + +L L L N + +I LS + L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 186 LCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSG-SIP 244
L N + P L NL ++ LD+S N++S S+
Sbjct: 156 LNFGNQVTDLKP-------------------------LANLTTLERLDISSNKVSDISV- 189
Query: 245 FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVM 304
L L+NL L +N +S P +G L +L +L L+ NQL +L +L++LT +
Sbjct: 190 --LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 243
Query: 305 SLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVP 364
L +N +S+ P L L L+ L L NQ++ + P
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------ 277
Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
+ L ++ LEL N+L P I NL L + + N++S P S +LT L+R+
Sbjct: 278 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRL 331
Query: 425 RFNQNNLS 432
F+ N +S
Sbjct: 332 FFSNNKVS 339
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 36/180 (20%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186
+ +L+ L LDL NNQ++ + P + L +L L NQ+ P + L+ + L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
Query: 187 CHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
N L P + NLK+++ L L N +S P S
Sbjct: 290 NENQLEDISP--------------------------ISNLKNLTYLTLYFNNISDISPVS 323
Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
+L+ L L+ +N +S S + NL ++ L NQ+S P L NL+ +T + L
Sbjct: 324 --SLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 129/290 (44%), Gaps = 51/290 (17%)
Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
+ + YL ++ ++ N+L P + NLT+LV + M N ++ P L NLT+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 112
Query: 425 RFNQNNLSGKVYEAFGYHPNLTFLDLSQNN------FYGEISFNWRNFPKLGTFIVSMNN 478
N ++ + NL L+LS N G S NF T + + N
Sbjct: 113 TLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLAN 170
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
++ L+ LDISSN V +I V LAKL +L LI + NQ+S P LG L
Sbjct: 171 LT-----------TLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP--LGIL 215
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE---------------- 582
T L L L+ N+L+ ++ +L L L+L+NNQ P+
Sbjct: 216 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS 273
Query: 583 ----VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628
+ L L+ L+L+ N L P I N+K+L L L NN+S P
Sbjct: 274 NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 165/391 (42%), Gaps = 80/391 (20%)
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL + +N L+ P + NL L+ + ++ NQ++ P L NL++LT ++LF+N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
++ P L NL +L+ L L N ++ + +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--------------------------SALSG 149
Query: 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429
L S+ +L N++ P + NLT L +++ N +S L LT+LE + N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 204
Query: 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489
+S G NL E+S N +GT + S+ N++
Sbjct: 205 QISD--ITPLGILTNL-----------DELSLNGNQLKDIGT-LASLTNLTD-------- 242
Query: 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN 549
LD+++N I P L+ L L +L L NQ+S P L LT L L+L+ N
Sbjct: 243 ------LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Query: 550 KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609
+L P I NL L YL L N P V L L +L YN ++ + N
Sbjct: 293 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLAN 346
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
+ ++ L+ HN +S P + NL+ I
Sbjct: 347 LTNINWLSAGHNQISDLTP-----LANLTRI 372
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 176/428 (41%), Gaps = 110/428 (25%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L ++ NNQLT + P + +L +L + + NQ+ P
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------------- 102
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
L NL +++ L L NQ++ P L N
Sbjct: 103 ---------------------------------LANLTNLTGLTLFNNQITDIDP--LKN 127
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL L L SN++S S + L SL QL+ NQ++ P L NL++L + + SN
Sbjct: 128 LTNLNRLELSSNTISD--ISALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
+S +L L +L +L NQ++ + P +G
Sbjct: 183 KVSDI--SVLAKLTNLESLIATNNQISDITP--------------------------LGI 214
Query: 370 LKSIFELELCTNRLRG-GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L ++ EL L N+L+ G S+ NLT+L L N N +S P L LT L ++
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN---NQISNLAP--LSGLTKLTELKLGA 269
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLE 486
N +S LT L+L++N +IS N +N L + NNIS P
Sbjct: 270 NQISN--ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLY---FNNISDISP-- 321
Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
+ KLQ L +N V ++ LA L ++N L NQ+S P L +LT + L L
Sbjct: 322 VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Query: 547 SANKLRSW 554
+ ++W
Sbjct: 378 ND---QAW 382
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 131/308 (42%), Gaps = 73/308 (23%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL-A 185
+ NL+ L L L NNQ+T + P + +L L L N + +I LS + L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 186 LCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSG-SIP 244
L N + P L NL ++ LD+S N++S S+
Sbjct: 156 LNFGNQVTDLKP-------------------------LANLTTLERLDISSNKVSDISV- 189
Query: 245 FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVM 304
L L+NL L +N +S P +G L +L +L L+ NQL +L +L++LT +
Sbjct: 190 --LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 243
Query: 305 SLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVP 364
L +N +S+ P L L L+ L L NQ++ + P
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP------------------------ 277
Query: 365 EEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424
+ L ++ LEL N+L P I NL L + + N++S P S +LT L+R+
Sbjct: 278 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRL 331
Query: 425 RFNQNNLS 432
F N +S
Sbjct: 332 FFYNNKVS 339
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 36/180 (20%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186
+ +L+ L LDL NNQ++ + P + L +L L NQ+ P + L+ + L L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
Query: 187 CHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
N L P + NLK+++ L L N +S P S
Sbjct: 290 NENQLEDISP--------------------------ISNLKNLTYLTLYFNNISDISPVS 323
Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
+L+ L L+ Y+N +S S + NL ++ L NQ+S P L NL+ +T + L
Sbjct: 324 --SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 170/404 (42%), Gaps = 32/404 (7%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
I+ L+L+ NQL + S L L + N++S P + L L L+L N+LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
+ ++LT + L SNS+ K+L L L N L+ +
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 151
Query: 349 XXXXXXXXXXXXXFVPEEIGYLK--SIFELELCTNRLRGGIP---HSIGNLTELVLVNM- 402
EE+ S+ +LEL +N+++ P H+IG L L L N+
Sbjct: 152 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 211
Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDLSQNNF--YGE 458
L+ + L N TS+ + + + LS F G NLT LDLS NN G
Sbjct: 212 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 270
Query: 459 ISFNWRNFPKLGTFIVSMNNI----SGSIP-------LEIGESFKLQVLDISSNHIVGEI 507
SF W P+L F + NNI S S+ L + SF Q + ++S + +
Sbjct: 271 DSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 328
Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN--KLRSWIPKSIGNLLK- 564
Q K L L + N + G L L+YL LS + LR+ ++ +L
Sbjct: 329 SFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 386
Query: 565 -LRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQ 606
L LNL+ N+ I KI + L HL LDL N +G+E+ Q
Sbjct: 387 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 429
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 107/256 (41%), Gaps = 26/256 (10%)
Query: 414 SLRNLTS----------LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS-FN 462
SLR LT+ L + +N +S +AF + +L LDL N E++
Sbjct: 371 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 430
Query: 463 WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI--VGEIPVQLAKLFSLNKL 520
WR + +S N LQ L + + V P L +L L
Sbjct: 431 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 490
Query: 521 ILSLNQLSGGMPFELGSLTELQYLDLSANKL-RSWIPKSIGN-------LLKLRYLNLSN 572
LS N ++ L L +L+ LDL N L R W + G L L LNL +
Sbjct: 491 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550
Query: 573 NQFIQKIPIEVEK-LIHLSKLDLSYNFLGKEMPFQICNMK-SLEKLNLCHNNLSGFIPRC 630
N F +IP+EV K L L +DL N L +P + N + SL+ LNL N ++ +
Sbjct: 551 NGF-DEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKV 608
Query: 631 F-EGMHNLSHIDISYN 645
F NL+ +D+ +N
Sbjct: 609 FGPAFRNLTELDMRFN 624
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
K +L L LS N L+ L +L+Y L N ++ S+ L +RYLNL
Sbjct: 251 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 310
Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFE 632
+ Q I L L K+D + FQ +K LE LN+ N++ G F
Sbjct: 311 SFTKQSI-----SLASLPKID--------DFSFQW--LKCLEHLNMEDNDIPGIKSNMFT 355
Query: 633 GMHNLSHIDIS 643
G+ NL ++ +S
Sbjct: 356 GLINLKYLSLS 366
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 568 LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI 627
LNL++NQ + + L+ LD+ +N + K P + L+ LNL HN LS
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 628 PRCFEGMHNLSHIDISYNELQ 648
+ F NL+ + + N +Q
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQ 115
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 522 LSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI 581
L L Q+ +P T + L+L+ N+LR + +L L++ N + P
Sbjct: 19 LKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 582 EVEKLIHLSKLDLSYNFLGK--EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSH 639
+KL L L+L +N L + + F C +L +L+L N++ F NL
Sbjct: 73 LCQKLPMLKVLNLQHNELSQLSDKTFAFCT--NLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 640 IDISYNEL 647
+D+S+N L
Sbjct: 131 LDLSHNGL 138
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 113/434 (26%), Positives = 175/434 (40%), Gaps = 35/434 (8%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
I+ L+L+ NQL P + S L IL NS+S P + L L L+L N+LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
+ ++LT + L SNS+ N K+L L L N L+ +
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 349 XXXXXXXXXXXXXFVPEEIGYL--KSIFELELCTNRLRGGIP---HSIGNLTELVLVNMC 403
EE+ +L S+ +L+L +N L+ P +IG L L+L N
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 404 EN-HLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFG--YHPNLTFLDLSQNNFY--GE 458
N HL+ + L N TS++ + N L F NLT LDLS NN + G
Sbjct: 207 LNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLN 518
SF++ P L + NNI P L+ L + +
Sbjct: 266 GSFSY--LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR---------------AFT 308
Query: 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578
K +SL F L L+YL++ N + S + L+ L+YL+LS F
Sbjct: 309 KQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT-FTSL 367
Query: 579 IPIEVEKLIHLSK-----LDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP-RCFE 632
+ E + L+ L+L+ N + K + L L+L N + + + +
Sbjct: 368 QTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR 427
Query: 633 GMHNLSHIDISYNE 646
G+ N+ I +SYN+
Sbjct: 428 GLRNIFEIYLSYNK 441
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 135/288 (46%), Gaps = 11/288 (3%)
Query: 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLE 422
+P+++ +I L L N+LR P + ++L +++ N +S P+ + L L+
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 423 RVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGS 482
+ N LS + F + NLT LDL N+ + S ++N L +S N +S S
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS-S 135
Query: 483 IPLEIG-ESFKLQVLDISSNHIVGEIPVQLAKL--FSLNKLILSLNQLSGGMPFELGSLT 539
L G + LQ L ++ N I+ +L L SL KL LS N L P ++
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIG 195
Query: 540 ELQYLDLSANKLRSWIPKSIGNLL---KLRYLNLSNNQFIQKIPIEVE--KLIHLSKLDL 594
+L L L+ +L + + + L ++ L+L+NNQ + K +L++LDL
Sbjct: 196 KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDL 255
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDI 642
SYN L + SL L+L +NN+ PR F G+ NL ++ +
Sbjct: 256 SYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 568 LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK-LNLCHNNLSGF 626
LNL++NQ + P + L+ LD +N + K P ++C + L K LNL HN LS
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQI 88
Query: 627 IPRCFEGMHNLSHIDISYNELQ 648
+ F NL+ +D+ N +
Sbjct: 89 SDQTFVFCTNLTELDLMSNSIH 110
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 170/404 (42%), Gaps = 32/404 (7%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
I+ L+L+ NQL + S L L + N++S P + L L L+L N+LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
+ ++LT + L SNS+ K+L L L N L+ +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 349 XXXXXXXXXXXXXFVPEEIGYLK--SIFELELCTNRLRGGIP---HSIGNLTELVLVNM- 402
EE+ S+ +LEL +N+++ P H+IG L L L N+
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDLSQNNF--YGE 458
L+ + L N TS+ + + + LS F G NLT LDLS NN G
Sbjct: 207 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265
Query: 459 ISFNWRNFPKLGTFIVSMNNI----SGSIP-------LEIGESFKLQVLDISSNHIVGEI 507
SF W P+L F + NNI S S+ L + SF Q + ++S + +
Sbjct: 266 DSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN--KLRSWIPKSIGNLLK- 564
Q K L L + N + G L L+YL LS + LR+ ++ +L
Sbjct: 324 SFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 565 -LRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQ 606
L LNL+ N+ I KI + L HL LDL N +G+E+ Q
Sbjct: 382 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 103/255 (40%), Gaps = 24/255 (9%)
Query: 414 SLRNLTS----------LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS-FN 462
SLR LT+ L + +N +S +AF + +L LDL N E++
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 463 WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI--VGEIPVQLAKLFSLNKL 520
WR + +S N LQ L + + V P L +L L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 521 ILSLNQLSGGMPFELGSLTELQYLDLSANKL-RSWIPKSIGN-------LLKLRYLNLSN 572
LS N ++ L L +L+ LDL N L R W + G L L LNL +
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 573 NQFIQKIPIEVEK-LIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCF 631
N F +IP+EV K L L +DL N L N SL+ LNL N ++ + F
Sbjct: 546 NGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 632 -EGMHNLSHIDISYN 645
NL+ +D+ +N
Sbjct: 605 GPAFRNLTELDMRFN 619
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
K +L L LS N L+ L +L+Y L N ++ S+ L +RYLNL
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFE 632
+ Q I L L K+D + FQ +K LE LN+ N++ G F
Sbjct: 306 SFTKQSI-----SLASLPKID--------DFSFQW--LKCLEHLNMEDNDIPGIKSNMFT 350
Query: 633 GMHNLSHIDIS 643
G+ NL ++ +S
Sbjct: 351 GLINLKYLSLS 361
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 568 LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI 627
LNL++NQ + + L+ LD+ +N + K P + L+ LNL HN LS
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 628 PRCFEGMHNLSHIDISYNELQ 648
+ F NL+ + + N +Q
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQ 110
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 522 LSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI 581
L L Q+ +P T + L+L+ N+LR + +L L++ N + P
Sbjct: 14 LKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 582 EVEKLIHLSKLDLSYNFLGK--EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSH 639
+KL L L+L +N L + + F C +L +L+L N++ F NL
Sbjct: 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCT--NLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 640 IDISYNEL 647
+D+S+N L
Sbjct: 126 LDLSHNGL 133
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 170/404 (42%), Gaps = 32/404 (7%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
I+ L+L+ NQL + S L L + N++S P + L L L+L N+LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXX 348
+ ++LT + L SNS+ K+L L L N L+ +
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 156
Query: 349 XXXXXXXXXXXXXFVPEEIGYLK--SIFELELCTNRLRGGIP---HSIGNLTELVLVNM- 402
EE+ S+ +LEL +N+++ P H+IG L L L N+
Sbjct: 157 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 216
Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF-GYH-PNLTFLDLSQNNF--YGE 458
L+ + L N TS+ + + + LS F G NLT LDLS NN G
Sbjct: 217 LGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 275
Query: 459 ISFNWRNFPKLGTFIVSMNNI----SGSIP-------LEIGESFKLQVLDISSNHIVGEI 507
SF W P+L F + NNI S S+ L + SF Q + ++S + +
Sbjct: 276 DSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 333
Query: 508 PVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN--KLRSWIPKSIGNLLK- 564
Q K L L + N + G L L+YL LS + LR+ ++ +L
Sbjct: 334 SFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 391
Query: 565 -LRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQ 606
L LNL+ N+ I KI + L HL LDL N +G+E+ Q
Sbjct: 392 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 434
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 103/255 (40%), Gaps = 24/255 (9%)
Query: 414 SLRNLTS----------LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS-FN 462
SLR LT+ L + +N +S +AF + +L LDL N E++
Sbjct: 376 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 435
Query: 463 WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHI--VGEIPVQLAKLFSLNKL 520
WR + +S N LQ L + + V P L +L L
Sbjct: 436 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 495
Query: 521 ILSLNQLSGGMPFELGSLTELQYLDLSANKL-RSWIPKSIGN-------LLKLRYLNLSN 572
LS N ++ L L +L+ LDL N L R W + G L L LNL +
Sbjct: 496 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
Query: 573 NQFIQKIPIEVEK-LIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCF 631
N F +IP+EV K L L +DL N L N SL+ LNL N ++ + F
Sbjct: 556 NGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 614
Query: 632 -EGMHNLSHIDISYN 645
NL+ +D+ +N
Sbjct: 615 GPAFRNLTELDMRFN 629
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
K +L L LS N L+ L +L+Y L N ++ S+ L +RYLNL
Sbjct: 256 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 315
Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFE 632
+ Q I L L K+D + FQ +K LE LN+ N++ G F
Sbjct: 316 SFTKQSI-----SLASLPKID--------DFSFQW--LKCLEHLNMEDNDIPGIKSNMFT 360
Query: 633 GMHNLSHIDIS 643
G+ NL ++ +S
Sbjct: 361 GLINLKYLSLS 371
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 568 LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI 627
LNL++NQ + + L+ LD+ +N + K P + L+ LNL HN LS
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 628 PRCFEGMHNLSHIDISYNELQ 648
+ F NL+ + + N +Q
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQ 120
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 522 LSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI 581
L L Q+ +P T + L+L+ N+LR + +L L++ N + P
Sbjct: 24 LKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 582 EVEKLIHLSKLDLSYNFLGK--EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSH 639
+KL L L+L +N L + + F C +L +L+L N++ F NL
Sbjct: 78 LCQKLPMLKVLNLQHNELSQLSDKTFAFCT--NLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 640 IDISYNEL 647
+D+S+N L
Sbjct: 136 LDLSHNGL 143
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN-QLSGSIP 292
L N++S S NL IL+L+SN L+ + L L QLDLS+N QL P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXX 352
+ L L + L L P + L +L L L N L +P
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 156
Query: 353 XXXXXXXXXFVPEE-IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPI 411
VPE L S+ L L NR+ PH+ +L L+ + + N+LS
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 412 PKSLRNLTSLERVRFNQN 429
++L L +L+ +R N N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%)
Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279
P + L ++ L L N L + +L NL L+L+ N +S L SL +
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
L L +N+++ P + +L L + LF+N+LS+ L L++L L L+ N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 538 LTELQYLDLSAN-KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
L L+ LDLS N +LRS P + L +L L+L + P L L L L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTT 656
N L ++ +L L L N +S R F G+H+L + + N + P++
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-- 195
Query: 657 FKD 659
F+D
Sbjct: 196 FRD 198
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%)
Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279
P L + TL L + L P L+ L LYL N+L +L +L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
L L N++S + L SL + L N ++ P +L L L L N L+ +
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 82/198 (41%), Gaps = 3/198 (1%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN-QLSGSIP 292
L N++S S NL IL+L+SN L+ + L L QLDLS+N QL P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXX 352
+ L L + L L P + L +L L L N L +P
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 157
Query: 353 XXXXXXXXXFVPEE-IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPI 411
VPE L S+ L L NR+ PH+ +L L+ + + N+LS
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 412 PKSLRNLTSLERVRFNQN 429
++L L +L+ +R N N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%)
Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279
P + L ++ L L N L + +L NL L+L+ N +S L SL +
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
L L +N+++ P + +L L + LF+N+LS+ L L++L L L+ N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 538 LTELQYLDLSAN-KLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596
L L+ LDLS N +LRS P + L +L L+L + P L L L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTT 656
N L ++ +L L L N +S R F G+H+L + + N + P++
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-- 196
Query: 657 FKD 659
F+D
Sbjct: 197 FRD 199
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%)
Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279
P L + TL L + L P L+ L LYL N+L +L +L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
L L N++S + L SL + L N ++ P +L L L L N L+ +
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 155/378 (41%), Gaps = 78/378 (20%)
Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
L +L Q++ S NQL+ P L NL+ L + + +N ++ P L NL +L+ L L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 334 QLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGN 393
Q+ + P + L ++ LEL +N + ++
Sbjct: 122 QITDIDP--------------------------LKNLTNLNRLELSSNTISD--ISALSG 153
Query: 394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
LT L ++ N ++ P L NLT+LER+ + N +S NL L + N
Sbjct: 154 LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 208
Query: 454 NF-----------YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
E+S N +GT + S+ N++ LD+++N
Sbjct: 209 QISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTD--------------LDLANNQ 253
Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
I P L+ L L +L L NQ+S P L LT L L+L+ N+L P I NL
Sbjct: 254 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 307
Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN 622
L YL L N P V L L +L + N + + N+ ++ L+ HN
Sbjct: 308 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQ 363
Query: 623 LSGFIPRCFEGMHNLSHI 640
+S P + NL+ I
Sbjct: 364 ISDLTP-----LANLTRI 376
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 176/428 (41%), Gaps = 110/428 (25%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L ++ NNQLT + P + +L +L + + NQ+ P
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------------- 106
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
L NL +++ L L NQ++ P L N
Sbjct: 107 ---------------------------------LANLTNLTGLTLFNNQITDIDP--LKN 131
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL L L SN++S S + L SL QL NQ++ P L NL++L + + SN
Sbjct: 132 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 186
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
+S +L L +L +L NQ++ + P +G
Sbjct: 187 KVSDI--SVLAKLTNLESLIATNNQISDITP--------------------------LGI 218
Query: 370 LKSIFELELCTNRLRG-GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L ++ EL L N+L+ G S+ NLT+L L N N +S P L LT L ++
Sbjct: 219 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN---NQISNLAP--LSGLTKLTELKLGA 273
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLE 486
N +S LT L+L++N +IS N +N L + NNIS P
Sbjct: 274 NQISN--ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLY---FNNISDISP-- 325
Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
+ KLQ L ++N V ++ LA L ++N L NQ+S P L +LT + L L
Sbjct: 326 VSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
Query: 547 SANKLRSW 554
+ ++W
Sbjct: 382 ND---QAW 386
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
L ++YL L NKL ++ L L YL L+ NQ +Q +P V +KL +L +L L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVE 118
Query: 597 NFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ----GPI 651
N L + +P + + + +L LNL HN L F+ + NL+ +D+SYN+LQ G
Sbjct: 119 NQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 652 PNSTTFKDARMEGNK 666
T KD R+ N+
Sbjct: 178 DKLTQLKDLRLYQNQ 192
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 49/119 (41%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V L ++ L L +NQL L+NL L L N L V L +L +LD
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
LS NQL L+ L + L+ N L S + L SL + LH N + P
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
L L +++ L L+ NQL L+NL L L N L V L +L L+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
L+ NQL L++LT + L N L S + L L L L+ NQL V
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
KL +L +L+L NQL LT L YL+L+ N+L+S +PK +
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGV------------- 152
Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCF 631
+KL +L++LDLSYN L + +P + + + L+ L L N L F
Sbjct: 153 ----------FDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Query: 632 EGMHNLSHI 640
+ + +L +I
Sbjct: 202 DRLTSLQYI 210
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 156/378 (41%), Gaps = 78/378 (20%)
Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
L +L Q++ S NQL+ P L NL+ L + + +N ++ P L NL +L+ L L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 334 QLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGN 393
Q+ + P + L ++ LEL +N + ++
Sbjct: 123 QITDIDP--------------------------LKNLTNLNRLELSSNTISD--ISALSG 154
Query: 394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
LT L ++ N ++ P L NLT+LER+ + N +S NL L + N
Sbjct: 155 LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNN 209
Query: 454 NF-----------YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
E+S N +GT + S+ N++ LD+++N
Sbjct: 210 QISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTD--------------LDLANNQ 254
Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL 562
I P L+ L L +L L NQ+S P L LT L L+L+ N+L P I NL
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308
Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN 622
L YL L N P V L L +L YN ++ + N+ ++ L+ HN
Sbjct: 309 KNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVS-SLANLTNINWLSAGHNQ 364
Query: 623 LSGFIPRCFEGMHNLSHI 640
+S P + NL+ I
Sbjct: 365 ISDLTP-----LANLTRI 377
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 175/428 (40%), Gaps = 110/428 (25%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L ++ NNQLT + P + +L +L + + NQ+ P
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------------- 107
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249
L NL +++ L L NQ++ P L N
Sbjct: 108 ---------------------------------LANLTNLTGLTLFNNQITDIDP--LKN 132
Query: 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L+NL L L SN++S S + L SL QL NQ++ P L NL++L + + SN
Sbjct: 133 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 187
Query: 310 SLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGY 369
+S +L L +L +L NQ++ + P +G
Sbjct: 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--------------------------LGI 219
Query: 370 LKSIFELELCTNRLRG-GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L ++ EL L N+L+ G S+ NLT+L L N N +S P L LT L ++
Sbjct: 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN---NQISNLAP--LSGLTKLTELKLGA 274
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLE 486
N +S LT L+L++N +IS N +N L + NNIS P
Sbjct: 275 NQISN--ISPLAGLTALTNLELNENQLE-DISPISNLKNLTYLTLY---FNNISDISP-- 326
Query: 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546
+ KLQ L +N V ++ LA L ++N L NQ+S P L +LT + L L
Sbjct: 327 VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
Query: 547 SANKLRSW 554
+ ++W
Sbjct: 383 ND---QAW 387
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
+E+ + Q +D + + +IP S + LS N L + + +ELQ+L
Sbjct: 8 IEVVPNITYQCMDQKLSKVPDDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWL 61
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604
DLS ++ + K+ L L L L+ N P L L L L
Sbjct: 62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121
Query: 605 FQICNMKSLEKLNLCHNNL-SGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657
F I + +L+KLN+ HN + S +P F + NL H+D+SYN +Q N F
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 119/286 (41%), Gaps = 70/286 (24%)
Query: 443 PNLTFLDLSQN--NFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF----KLQVL 496
P+L++LDLS+N +F G S++ LGT + ++S + + + +F +LQ L
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYS-----DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404
Query: 497 DISSNHIVGEIPVQLAKLFSLNKLI-LSLNQLSGGMPFE---LGSLTELQYLDLSANKLR 552
D H + + + SL KL+ L ++ + + F+ LG LT L L ++ N +
Sbjct: 405 DFQ--HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFK 461
Query: 553 S-WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMK 611
+ N L +L+LS Q +++I V +H
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLH----------------------- 497
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGN 671
L+ LN+ HNNL + +++LS +D S+N R+E +KG+
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN---------------RIETSKGI--- 539
Query: 672 IKGLPSCKAFTS---------CKQASRKKWVVVMFSSLVMIILLIC 708
++ P AF + C+ +WV LV + + C
Sbjct: 540 LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTC 585
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
+ + LDL +NKL S K+ L KLR L L++N+ +Q +P + ++L +L L ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN 95
Query: 598 FLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ----GPIP 652
L + +P + + + +L +L L N L PR F+ + L+++ + YNELQ G
Sbjct: 96 KL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 653 NSTTFKDARMEGNK 666
T+ K+ R+ N+
Sbjct: 155 KLTSLKELRLYNNQ 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFK-LQVLDISSNHIVGE 506
LDL N S + KL ++ N + ++P I + K L+ L ++ N +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 507 IPVQL-AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI-GNLLK 564
+P+ + +L +L +L L NQL P SLT+L YL L N+L+S +PK + L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTS 158
Query: 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNL 618
L+ L L NNQ + +KL L L L N L K +P SLEKL +
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGA--FDSLEKLKM 209
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 26/203 (12%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
LDL N+LS + L+ L +LYL N L + L++L L +++N+L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 288 SGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXX 346
++PI + L +L + L N L S P + +L L+ L L N+L +P +
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGV--- 152
Query: 347 XXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENH 406
L S+ EL L N+L+ + LTEL + + N
Sbjct: 153 --------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 407 LSGPIPKSLRNLTSLERVRFNQN 429
L + +L L+ ++ +N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 26/178 (14%)
Query: 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
+LDL N+LS + L+ L ++ L N L + I LK+L L + N+L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 339 IPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELV 398
+P + L ++ EL L N+L+ P +LT+L
Sbjct: 100 LPIGV-----------------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 399 LVNMCENHLSGPIPKSL-RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455
+++ N L +PK + LTSL+ +R N L AF L L L N
Sbjct: 137 YLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 61/157 (38%), Gaps = 2/157 (1%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+KL+ L L +N+L + L L +L+ N+L QL + EL L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLG 248
L +PP + S+P V L S+ L L NQL +
Sbjct: 120 QLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN 285
L+ L L L +N L +LE L L L EN
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 4/178 (2%)
Query: 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLSLINELALCHNNLY 192
+ LDL +N+L+ + L +LR LY + N+L +P I +L + L + N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 193 GPIPPSLGXXXXXXXXXXXXXXXFDSIP-LVLGNLKSISTLDLSKNQLSGSIPFSLGNLS 251
+P + S+P V +L ++ L L N+L L+
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 252 NLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
+L L LY+N L L L L L NQL + +L L ++ L N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161
F +L L L N ++PP+V +L+KL +L LG N+L + L L+ L
Sbjct: 105 FDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 162 FDVNQLHGPIPQEIGQLSLINELALCHNNL 191
NQL +L+ + L L +N L
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 9/171 (5%)
Query: 481 GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
GS +E+ + Q ++++ I +P FS L LS N L + S E
Sbjct: 1 GSPCVEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSWNPLRHLGSYSFFSFPE 54
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFL 599
LQ LDLS ++++ + +L L L L+ N IQ + + L L KL L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 113
Query: 600 GKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 96 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
+E+ + Q +D + + +IP S + LS N L + + +ELQ+L
Sbjct: 3 IEVVPNITYQCMDQKLSKVPDDIPS------STKNIDLSFNPLKILKSYSFSNFSELQWL 56
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604
DLS ++ + K+ L L L L+ N P L L L L
Sbjct: 57 DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 116
Query: 605 FQICNMKSLEKLNLCHNNL-SGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657
F I + +L+KLN+ HN + S +P F + NL H+D+SYN +Q N F
Sbjct: 117 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 119/286 (41%), Gaps = 70/286 (24%)
Query: 443 PNLTFLDLSQN--NFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF----KLQVL 496
P+L++LDLS+N +F G S++ LGT + ++S + + + +F +LQ L
Sbjct: 345 PSLSYLDLSRNALSFSGCCSYS-----DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 399
Query: 497 DISSNHIVGEIPVQLAKLFSLNKLI-LSLNQLSGGMPFE---LGSLTELQYLDLSANKLR 552
D H + + + SL KL+ L ++ + + F+ LG LT L L ++ N +
Sbjct: 400 DFQ--HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFK 456
Query: 553 S-WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMK 611
+ N L +L+LS Q +++I V +H
Sbjct: 457 DNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLH----------------------- 492
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGN 671
L+ LN+ HNNL + +++LS +D S+N R+E +KG+
Sbjct: 493 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN---------------RIETSKGI--- 534
Query: 672 IKGLPSCKAFTS---------CKQASRKKWVVVMFSSLVMIILLIC 708
++ P AF + C+ +WV LV + + C
Sbjct: 535 LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTC 580
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 481 GSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
GS P +E+ + Q ++++ I +P FS L LS N L + S
Sbjct: 1 GSEPCVEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSWNPLRHLGSYSFFSFP 54
Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNF 598
ELQ LDLS ++++ + +L L L L+ N IQ + + L L KL
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 113
Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
L F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 97 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 481 GSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539
GS P +E+ + Q ++++ I +P FS L LS N L + S
Sbjct: 1 GSEPCVEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFP 54
Query: 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNF 598
ELQ LDLS ++++ + +L L L L+ N IQ + + L L KL
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVALETN 113
Query: 599 LGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
L F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 97 AFSGLSSLQKLVALETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 151 TNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 481 GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
GS +E+ + Q +++ I +P FS L LS N L + S E
Sbjct: 1 GSPCVEVVPNITYQCEELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPE 54
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFL 599
LQ LDLS ++++ + +L L L L+ N IQ + + L L KL L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL 113
Query: 600 GKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 96 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
+E+ + Q ++++ I +P FS L LS N L + S ELQ L
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFLGKEM 603
DLS ++++ + +L L L L+ N IQ + + L L KL L
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 604 PFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 95 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN-QLSGSIP 292
L N++S S + NL IL+L+SN+L+G + L L QLDLS+N QL P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXX 352
+ L L + L L P + L +L L L N L + ++
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTF--------- 148
Query: 353 XXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIP 412
++G L +F L NR+ H+ L L + + +NH++ P
Sbjct: 149 ------------RDLGNLTHLF---LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 413 KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453
+ R+L L + NNLS E +L +L L+ N
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%)
Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279
P + L ++ L L N L + +L NL L+L+ N + L SL +
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
L L +N ++ P + +L L + LF+N+LS +L L+SL L L+ N
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
S ++ L N++S S L L L +N L + L L L+LS+N
Sbjct: 32 SSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQ 91
Query: 576 IQKI-PIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM 634
++ + P L HL L L L + P + +L+ L L NNL F +
Sbjct: 92 LRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
Query: 635 HNLSHIDISYNEL 647
NL+H+ + N +
Sbjct: 152 GNLTHLFLHGNRI 164
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 127/312 (40%), Gaps = 45/312 (14%)
Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
+CT R +P SI T + N+ EN + + ++L LE ++ ++N +
Sbjct: 20 ICTRRELAEVPASIPVNTRYL--NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVL 496
AF P+L L+L N ++P + E KL+ L
Sbjct: 78 AFNGLPSLNTLELFDNRL-------------------------TTVPTQAFEYLSKLREL 112
Query: 497 DISSNHIVGEIPVQLAKLFSLNKLIL-SLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
+ +N I ++ SL +L L L +L L L+YL+L L+ I
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-I 171
Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615
P ++ L++L L LS N+ P + L L KL L + + ++KSLE+
Sbjct: 172 P-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNE-------------LQGPIPNSTTFKDARM 662
LNL HNNL F +H L + +++N L+ +P++TT AR
Sbjct: 231 LNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC-ARC 289
Query: 663 EGNKGLCGNIKG 674
GL G G
Sbjct: 290 HAPAGLKGRYIG 301
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 19/232 (8%)
Query: 74 VGISC-NQAERII-----------SINLSSMGLN---GTLQEFAFSSFPHLVHL---NLS 115
SC NQA R+I SI +++ LN ++Q +F HL HL LS
Sbjct: 8 AACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS 67
Query: 116 FNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI 175
N+V L L L+L +N+LT V +L++LR L+ N +
Sbjct: 68 KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
Query: 176 GQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLS 235
++ + L L I + IP L L + L+LS
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELS 186
Query: 236 KNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
N+L P S L++L L+L ++ + +L+SL +L+LS N L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 29/273 (10%)
Query: 374 FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG 433
F +C + +P I T L+N+ EN + S ++L LE ++ ++N++
Sbjct: 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 434 KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKL 493
AF NL L+L N P G F+ KL
Sbjct: 103 IEIGAFNGLANLNTLELFDNRL--------TTIPN-GAFVYLS---------------KL 138
Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLIL-SLNQLSGGMPFELGSLTELQYLDLSANKLR 552
+ L + +N I ++ SL +L L L +LS L+ L+YL+L+ LR
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKS 612
IP ++ L+KL L+LS N P + L+HL KL + + + N++S
Sbjct: 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 613 LEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
L ++NL HNNL+ F +H+L I + +N
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 98 LQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ E AF +L +LNL+ + P + L KL LDL N L+ + P L L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 158 RSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL 191
+ L+ +Q+ L + E+ L HNNL
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 490 SFK----LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLD 545
SFK L++L +S NHI L +LN L L N+L+ L++L+ L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 546 LSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFLGKEMP 604
L N + S + + LR L+L + + I E L +L L+L+ L +E+P
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIP 201
Query: 605 FQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
+ + L++L+L N+LS P F+G+ +L + + +++Q
Sbjct: 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
+ L+SI TLDL+ Q++ P L LSNL +LYL N ++ P + L +L L
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 163
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
+ NQ++ P L NLS LT + N +S P L +L +L + L NQ++ V P
Sbjct: 164 IGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 58/180 (32%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186
+ L ++ LDL + Q+T V P + L+ L+ LY D+NQ+ P
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-------------- 152
Query: 187 CHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246
L L ++ L + NQ++ P
Sbjct: 153 ------------------------------------LAGLTNLQYLSIGNNQVNDLTP-- 174
Query: 247 LGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306
L NLS L L N +S P + +L +L+++ L +NQ+S P L NLS+L +++L
Sbjct: 175 LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIVTL 230
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
+A L S+ L L+ Q++ P L L+ LQ L L N++ + P + L L+YL++
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 164
Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
NNQ P+ L L+ L N + P ++ +L +++L N +S P
Sbjct: 165 GNNQVNDLTPL--ANLSKLTTLRADDNKISDISPL--ASLPNLIEVHLKDNQISDVSP-- 218
Query: 631 FEGMHNLSHI 640
+ NLS++
Sbjct: 219 ---LANLSNL 225
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 123 IPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIP 172
I P G L+ LQ+L +GNNQ+ + P + +L++L +L D N++ P
Sbjct: 150 ISPLAG-LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP 196
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 485 LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544
+E+ + Q ++++ I +P FS L LS N L + S ELQ L
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 545 DLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDLSYNFLGKEM 603
DLS ++++ + +L L L L+ N IQ + + L L KL L
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 604 PFQICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYNELQG 649
F I ++K+L++LN+ HN + F +P F + NL H+D+S N++Q
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL-SGPIPSVIGNLESLLQL 280
V +L+++ LD+S + LS+L +L + NS +P + L +L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 281 DLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
DLS+ QL P + +LSSL V+++ SN L S I L SL + LH N + P
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 106/462 (22%), Positives = 181/462 (39%), Gaps = 62/462 (13%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
+ LDLS+ ++ + +LS+L L L N + L SL +L E L+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALGLHINQLNGVIPSSIXXXX 347
+G+L +L +++ N + SF +P NL +L L L N++ + + +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 348 XXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHL 407
P + E+ L LR N L ++ C L
Sbjct: 174 QMPLLNLSLDLSL--NPMNFIQPGAFKEIRLHKLTLRN-------NFDSLNVMKTCIQGL 224
Query: 408 SGP-----IPKSLRNLTSLERVRFNQNNLSGK---VYEAFGYHPNLTFLDLSQNNFYGEI 459
+G + RN +LE+ F+++ L G E F L +LD + +I
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEK--FDKSALEGLCNLTIEEF----RLAYLDY----YLDDI 274
Query: 460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNK 519
+ + +F S+ +++ + +F Q L++ N G+ P KL SL +
Sbjct: 275 IDLFNCLTNVSSF--SLVSVTIERVKDFSYNFGWQHLELV-NCKFGQFPT--LKLKSLKR 329
Query: 520 LILSLNQLSGGMPFELGSLTELQYLDLSANKL--RSWIPKSIGNLLKLRYLNLSNNQFIQ 577
L + N+ GG F L L++LDLS N L + +S L+YL+LS N I
Sbjct: 330 LTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
Query: 578 KIP--IEVEKLIHLS----------------------KLDLSYNFLGKEMPFQICNMKSL 613
+ +E+L HL LD+S+ + SL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 614 EKLNLCHNNL-SGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
E L + N+ F+P F + NL+ +D+S +L+ P +
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 14/246 (5%)
Query: 419 TSLERVRFNQNNLSGKVYE----AFGYHPNLTFLDLSQNNFY---GEISFNWRNFPKLGT 471
++ERV+ N + E FG P L L + F G +F+ + P L
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 472 FIVSMNNIS--GSIPLEIGESFKLQVLDISSNHIVGEIP--VQLAKLFSLNKLILSLNQL 527
+S N +S G + L+ LD+S N ++ + L +L L+ +L Q+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 528 SGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK-IPIEVEKL 586
S F SL L YLD+S R L L L ++ N F + +P +L
Sbjct: 412 SEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 587 IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646
+L+ LDLS L + P ++ SL+ LN+ N L F+ + +L I + N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Query: 647 LQGPIP 652
P
Sbjct: 530 WDCSCP 535
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF----------YGEISFNWRNFP 467
L SL+R+ F N G + P+L FLDLS+N +G S + +
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 468 KLGTFIVSMN---------------NISGSIPLEIGESFK-LQVLDISSNHIVGEIPVQL 511
G +S N N+ + S + L LDIS H
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 512 AKLFSLNKLILSLNQLSGG-MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
L SL L ++ N +P L L +LDLS +L P + +L L+ LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 571 SNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
++NQ ++ +P + ++L L K+ L N
Sbjct: 502 ASNQ-LKSVPDGIFDRLTSLQKIWLHTN 528
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 95 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 127/312 (40%), Gaps = 45/312 (14%)
Query: 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE 437
+CT R +P SI T + N+ EN + + ++L LE ++ ++N +
Sbjct: 20 ICTRRELAEVPASIPVNTRYL--NLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG 77
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF-KLQVL 496
AF P+L L+L N ++P + E KL+ L
Sbjct: 78 AFNGLPSLNTLELFDNRL-------------------------TTVPTQAFEYLSKLREL 112
Query: 497 DISSNHIVGEIPVQLAKLFSLNKLIL-SLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555
+ +N I ++ SL +L L L +L L L+YL+L L+ I
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-I 171
Query: 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615
P ++ L++L L LS N+ P + L L KL L + + ++KSLE+
Sbjct: 172 P-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNE-------------LQGPIPNSTTFKDARM 662
LNL HNNL F +H L + +++N L+ +P++TT AR
Sbjct: 231 LNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC-ARC 289
Query: 663 EGNKGLCGNIKG 674
GL G G
Sbjct: 290 HAPAGLKGRYIG 301
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 19/232 (8%)
Query: 74 VGISC-NQAERII-----------SINLSSMGLN---GTLQEFAFSSFPHLVHLN---LS 115
SC NQA R+I SI +++ LN ++Q +F HL HL LS
Sbjct: 8 AACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS 67
Query: 116 FNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI 175
N+V L L L+L +N+LT V +L++LR L+ N +
Sbjct: 68 KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAF 127
Query: 176 GQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLS 235
++ + L L I + IP L L + L+LS
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELS 186
Query: 236 KNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
N+L P S L++L L+L ++ + +L+SL +L+LS N L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 515 FSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
FS L LS N L + S ELQ LDLS ++++ + +L L L L+ N
Sbjct: 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111
Query: 575 FIQKIPI-EVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFE 632
IQ + + L L KL L F I ++K+L++LN+ HN + F +P F
Sbjct: 112 -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 170
Query: 633 GMHNLSHIDISYNELQG 649
+ NL H+D+S N++Q
Sbjct: 171 NLTNLEHLDLSSNKIQS 187
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 125/308 (40%), Gaps = 36/308 (11%)
Query: 420 SLERVRFNQNNLSGKVYE----AFGYHPNLTFLDLSQNNFY---GEISFNWRNFPKLGTF 472
++ERV+ N + E FG P L L + F G +F+ + P L
Sbjct: 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 376
Query: 473 IVSMNNIS--GSIPLEIGESFKLQVLDISSNHIVGEIP--VQLAKLFSLNKLILSLNQLS 528
+S N +S G + L+ LD+S N ++ + L +L L+ +L Q+S
Sbjct: 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436
Query: 529 GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK-IPIEVEKLI 587
F SL L YLD+S R L L L ++ N F + +P +L
Sbjct: 437 EFSVF--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494
Query: 588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN---LSGFIPRCFEGM----HNLSHI 640
+L+ LDLS L + P ++ SL+ LN+ HNN L F +C + ++L+HI
Sbjct: 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Query: 641 DISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSL 700
S + P+S F + N C +C+ S +W+ L
Sbjct: 555 MTSKKQELQHFPSSLAF--LNLTQNDFAC-------------TCEHQSFLQWIKDQRQLL 599
Query: 701 VMIILLIC 708
V + + C
Sbjct: 600 VEVERMEC 607
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 30/235 (12%)
Query: 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF----------YGEISFNWRNFP 467
L SL+R+ F N G + P+L FLDLS+N +G IS + +
Sbjct: 348 LKSLKRLTFTSNK-GGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 468 KLGTFIVSMN---------------NISGSIPLEIGESFK-LQVLDISSNHIVGEIPVQL 511
G +S N N+ + S + L LDIS H
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465
Query: 512 AKLFSLNKLILSLNQLSGG-MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
L SL L ++ N +P L L +LDLS +L P + +L L+ LN+
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNM-KSLEKLNLCHNNLS 624
S+N F + L L LD S N + ++ + SL LNL N+ +
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL-SGPIPSVIGNLESLLQL 280
V +L+++ LD+S + LS+L +L + NS +P + L +L L
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 281 DLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
DLS+ QL P + +LSSL V+++ N+ S L SL L +N +
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 119 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 173 TNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 50/246 (20%)
Query: 225 NLKSISTLDLSKNQLS----------GSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
+L S+ LDLS+N LS G+I +LS G++ + SN L L
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG---------L 419
Query: 275 ESLLQLDLSENQLSG----SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
E L LD + L S+ +SL NL L + +++ +F I L SL L +
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAF-NGIFNGLSSLEVLKM 476
Query: 331 HINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHS 390
N F+P+ L+++ L+L +L P +
Sbjct: 477 AGNSFQ-----------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNN-LSGKVYEAFGYHPNLTFLD 449
+L+ L ++NM N+ + L SL+ + ++ N+ ++ K E + +L FL+
Sbjct: 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Query: 450 LSQNNF 455
L+QN+F
Sbjct: 574 LTQNDF 579
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 515 FSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
FS L LS N L + S ELQ LDLS ++++ + +L L L L+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 575 FIQKIPI-EVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF-IPRCFE 632
IQ + + L L KL L F I ++K+L++LN+ HN + F +P F
Sbjct: 88 -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 633 GMHNLSHIDISYNELQG 649
+ NL H+D+S N++Q
Sbjct: 147 NLTNLEHLDLSSNKIQS 163
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 125/308 (40%), Gaps = 36/308 (11%)
Query: 420 SLERVRFNQNNLSGKVYE----AFGYHPNLTFLDLSQNNFY---GEISFNWRNFPKLGTF 472
++ERV+ N + E FG P L L + F G +F+ + P L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 473 IVSMNNIS--GSIPLEIGESFKLQVLDISSNHIVGEIP--VQLAKLFSLNKLILSLNQLS 528
+S N +S G + L+ LD+S N ++ + L +L L+ +L Q+S
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 529 GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK-IPIEVEKLI 587
F SL L YLD+S R L L L ++ N F + +P +L
Sbjct: 413 EFSVF--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNN---LSGFIPRCFEGM----HNLSHI 640
+L+ LDLS L + P ++ SL+ LN+ HNN L F +C + ++L+HI
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Query: 641 DISYNELQGPIPNSTTFKDARMEGNKGLCGNIKGLPSCKAFTSCKQASRKKWVVVMFSSL 700
S + P+S F + N C +C+ S +W+ L
Sbjct: 531 MTSKKQELQHFPSSLAF--LNLTQNDFAC-------------TCEHQSFLQWIKDQRQLL 575
Query: 701 VMIILLIC 708
V + + C
Sbjct: 576 VEVERMEC 583
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL-SGPIPSVIGNLESLLQL 280
V +L+++ LD+S + LS+L +L + NS +P + L +L L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 281 DLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
DLS+ QL P + +LSSL V+++ N+ S L SL L +N +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 90/235 (38%), Gaps = 30/235 (12%)
Query: 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF----------YGEISFNWRNFP 467
L SL+R+ F N G + P+L FLDLS+N +G S + +
Sbjct: 324 LKSLKRLTFTSNK-GGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 468 KLGTFIVSMN---------------NISGSIPLEIGESFK-LQVLDISSNHIVGEIPVQL 511
G +S N N+ + S + L LDIS H
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 512 AKLFSLNKLILSLNQLSGG-MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570
L SL L ++ N +P L L +LDLS +L P + +L L+ LN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNM-KSLEKLNLCHNNLS 624
S+N F + L L LD S N + ++ + SL LNL N+ +
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 72 AWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFG-TIPPQVGNL 130
A+ G+S Q + NL+S L+ F L LN++ N++ +P NL
Sbjct: 95 AFSGLSSLQKLVAVETNLAS------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 131 SKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ L+HLDL +N++ + ++ L+Q+
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 362 FVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL 421
F+P+ L+++ L+L +L P + +L+ L ++NM N+ + L SL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 422 ERVRFNQNN-LSGKVYEAFGYHPNLTFLDLSQNNF 455
+ + ++ N+ ++ K E + +L FL+L+QN+F
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
LQ LD+++ H+ E+P L L +L KL+LS N+ + L +L + N R
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 553 SWI-PKSIGNLLKLRYLNLSNNQFIQK--IPIEVEKLIHLSKLDLSYN--FLGKEMPFQI 607
+ + NL LR L+LS++ +++ L HL L+LSYN K F+
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 608 CNMKSLEKLNLCHNNLSGFIPRC-FEGMH-----NLSH--IDISYNELQGPIPNSTTFKD 659
C LE L+L L + F+ +H NLSH +DIS +L +P +
Sbjct: 399 C--PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP---ALQH 453
Query: 660 ARMEGNKGLCGNIK 673
++GN GNI+
Sbjct: 454 LNLQGNHFPKGNIQ 467
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 15/169 (8%)
Query: 415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIV 474
LRNL+ L+ + + N EAF P L LDL+ + + P ++
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA----FTRLKVKDAQSPFQNLHLL 427
Query: 475 SMNNISGSIPLEIGESF------KLQVLDISSNHI-VGEIPV--QLAKLFSLNKLILSLN 525
+ N+S S+ L+I LQ L++ NH G I L L L L+LS
Sbjct: 428 KVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486
Query: 526 QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574
LS SL + ++DLS N+L S +++ + LK YLNL++N
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGIYLNLASNH 534
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 23/213 (10%)
Query: 450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG----ESFK-LQVLDISSNHIV 504
LS N F + NFP L + N + LE+G E+ + L+ LD+S + I
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGN----TKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 505 GE--IPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS-IGN 561
+QL L L L LS N+ +L+ LDL+ +L+ +S N
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423
Query: 562 LLKLRYLNLSNNQFIQKIPIEVEKLIH----LSKLDLSYNFLGK---EMPFQICNMKSLE 614
L L+ LNLS++ + I E+L L L+L N K + + + LE
Sbjct: 424 LHLLKVLNLSHS----LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
L L +LS F + ++H+D+S+N L
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 16/250 (6%)
Query: 98 LQEFAFSSFPHLVHLNLSFN---IVFGTIPPQVGNLSKLQHLDLGNNQL--TGVIPPEIG 152
L + + S+FP L HL++ N + GT + NL L+ LDL ++ + + ++
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGT--GCLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 153 HLNQLRSLYFDVNQ---LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXX 209
+L+ L+SL N+ L +E QL L+ +LA + P
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELL-DLAFTRLKVKDAQSPFQNLHLLKVLNL 432
Query: 210 XXXXXXFDSIPLVLGNLKSISTLDLSKNQL-SGSIPF--SLGNLSNLGILYLYSNSLSGP 266
S L G L ++ L+L N G+I SL L L IL L LS
Sbjct: 433 SHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLS 326
+L+ + +DLS N+L+ S +L +L + ++L SN +S +P +L L
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550
Query: 327 ALGLHINQLN 336
+ L N L+
Sbjct: 551 TINLRQNPLD 560
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 403 CENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFN 462
CEN IP +L N S E + F+ N L F NLTFLDL++ Y
Sbjct: 19 CENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76
Query: 463 WRNFPKLGTFIVSMN 477
+++ +L T +++ N
Sbjct: 77 FQSQHRLDTLVLTAN 91
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 30/194 (15%)
Query: 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH--GPIPQEIGQLSLINELA 185
+S HLD NN LT + GHL +L +L +NQL I + Q+ + +L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 186 LCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPF 245
+ N++ +D KS+ +L++S N L+ +I
Sbjct: 381 ISQNSV-----------------------SYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417
Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVM 304
L + +L L+SN + IP + LE+L +L+++ NQL S+P + L+SL +
Sbjct: 418 CLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKI 473
Query: 305 SLFSNSLSSFIPPI 318
L +N P I
Sbjct: 474 WLHTNPWDCSCPRI 487
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG-SIPLEIGESFK-LQVLDISSNHIVG 505
LD S N + N + +L T I+ MN + S E+ K LQ LDIS N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT--ELQYLDLSANKLRSWIPKSIGNLL 563
+ + S K +LSLN S + + ++ LDL +NK++S IPK + L
Sbjct: 389 D---EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 564 KLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYN 597
L+ LN+++NQ ++ +P + ++L L K+ L N
Sbjct: 445 ALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTN 478
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 400 VNMCENHLSGPIPKSLRNLTSLERVRFNQNNLS--GKVYEAFGYHPNLTFLDLSQNNF-Y 456
++ N L+ + ++ +LT LE + N L K+ E +L LD+SQN+ Y
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 457 GEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFS 516
E + L + +S N ++ +I + +++VLD+ SN I IP Q+ KL +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKI-KSIPKQVVKLEA 445
Query: 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557
L +L ++ NQL LT LQ + L N P+
Sbjct: 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 57 ATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVH-LNLS 115
+ N SY + K C+W + ++S+N+SS L T+ F P + L+L
Sbjct: 382 SQNSVSYDEKK-GDCSW-------TKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLH 429
Query: 116 FNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQ 173
N + +IP QV L LQ L++ +NQL V L L+ ++ N P+
Sbjct: 430 SNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 26/132 (19%)
Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS--GPIPSVIGNLESLLQLDLSENQLS- 288
LD S N L+ ++ + G+L+ L L L N L I + ++SL QLD+S+N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 289 ----GSIPISLG----NLSS--------------LTVMSLFSNSLSSFIPPILGNLKSLS 326
G + N+SS + V+ L SN + S IP + L++L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQ 447
Query: 327 ALGLHINQLNGV 338
L + NQL V
Sbjct: 448 ELNVASNQLKSV 459
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 543 YLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF--IQKIPIEVEKLIHLSKLDLSYNFLG 600
+LD S N L + ++ G+L +L L L NQ + KI ++ L +LD+S N +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 601 KEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKD 659
+ C+ KSL LN+ N L+ I RC + +D+ N+++ IP +
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 660 ARMEGNKGLCGNIKGLPS 677
A E N +K +P
Sbjct: 445 ALQELNVA-SNQLKSVPD 461
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 87 INLSSMGLNGT--LQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLT 144
+N+ + ++GT + S +HL+ S N++ T+ G+L++L+ L L NQL
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 145 GVIPPEIGHL-NQLRSL-YFDVNQLHGPIPQEIGQLSLINELA-------LCHNNLYGPI 195
+ +I + Q++SL D++Q ++ G S L + + ++ +
Sbjct: 362 EL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 196 PPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGI 255
PP + SIP + L+++ L+++ NQL L++L
Sbjct: 420 PPRIK-------VLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 256 LYLYSNSLSGPIPSV 270
++L++N P +
Sbjct: 473 IWLHTNPWDCSCPRI 487
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 483 IPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQ 542
+P ++ + K +L+IS N+I + L L LI+S N++ EL+
Sbjct: 15 VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 543 YLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI--EVEKLIHLSKLDLSYNFLG 600
YLDLS NKL + S + L++L+LS N F +PI E + L L LS L
Sbjct: 73 YLDLSHNKL---VKISCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLE 128
Query: 601 K 601
K
Sbjct: 129 K 129
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 109 LVHLNLSFNIVFGTIP--PQVGNLSKLQHLDLGNNQL--TGVIPPEIGHLN 155
L HL+LSFN F +P + GN+S+L+ L L L + V+P I HLN
Sbjct: 92 LKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP--IAHLN 139
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
+ L+SI TLDL+ Q++ P L LSNL +LYL N ++ P + L +L L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
+ Q+S P L NLS LT + N +S P L +L +L + L NQ++ V P
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
+ L ++ LDL + Q+T V P + L+ L+ LY D+NQ+
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI 141
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
S +T+D S L+ S+P + + +LYLY N ++ P V L L +LDL NQL
Sbjct: 18 SGTTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
+ L+ LT +SL N L S NLKSL+ + L
Sbjct: 75 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
+ L L NQ++ P L+ L L L +N L+ V L L QL L++NQL
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
Query: 288 SGSIPI-SLGNLSSLTVMSLFSN 309
SIP + NL SLT + L +N
Sbjct: 99 K-SIPRGAFDNLKSLTHIWLLNN 120
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
QVL + N I P +L L +L L NQL+ LT+L L L+ N+L+S
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 554 WIPKSIGNLLKLRYLNLSNN 573
+ NL L ++ L NN
Sbjct: 101 IPRGAFDNLKSLTHIWLLNN 120
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 544 LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM 603
+D S L S +P I ++ YL +NQ + P ++L L++LDL N L
Sbjct: 22 VDCSGKSLAS-VPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 604 PFQICNMKSLEKLNLCHNNLSGFIPR-CFEGMHNLSHI 640
+ L +L+L N L IPR F+ + +L+HI
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHI 115
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 124 PPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
P L++L LDL NNQLT + L QL L + NQL
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 135/325 (41%), Gaps = 69/325 (21%)
Query: 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189
L+ L++L+L NQ+T + P + +L +L +LY N++ + L+ + EL L +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 190 NLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQ-LSGSIPFSLG 248
N+ P L NL +L+L N LS P S
Sbjct: 121 NISDISP--------------------------LANLTKXYSLNLGANHNLSDLSPLS-- 152
Query: 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS 308
N + L L + + + P I NL L L L+ NQ+ P L +L+SL + +
Sbjct: 153 NXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208
Query: 309 NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIG 368
N ++ P + N L++L + N++ + P +
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSP--------------------------LA 240
Query: 369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428
L + LE+ TN++ +++ +LT+L +N+ N +S L NL+ L + N
Sbjct: 241 NLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNN 296
Query: 429 NNLSGKVYEAFGYHPNLTFLDLSQN 453
N L + E G NLT L LSQN
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQN 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 133/321 (41%), Gaps = 45/321 (14%)
Query: 106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVN 165
+L +LNL+ N + P + NL KL +L +G N++T + + +L LR LY + +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 166 QLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXXXXXXXFDSIPLVLGN 225
+ P + L+ L L N+ + P L D P+ N
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTPI--AN 175
Query: 226 LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSEN 285
L + +L L+ NQ+ P L +L++L Y N ++ P + N L L + N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNN 231
Query: 286 QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIXX 345
+++ P L NLS LT + + +N +S + +L L L + NQ++ +
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDI------- 280
Query: 346 XXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCEN 405
V + L S+F L N+L IG LT L + + +N
Sbjct: 281 ----------------SVLNNLSQLNSLF---LNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 406 HLSGPIPKSLRNLTSLERVRF 426
H++ P L +L+ + F
Sbjct: 322 HITDIRP--LASLSKXDSADF 340
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 15/205 (7%)
Query: 92 MGLNGTLQEFA-FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPE 150
+G N L + + S+ L +L ++ + V P + NL+ L L L NQ+ + P
Sbjct: 139 LGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-- 194
Query: 151 IGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXXXXXX 210
+ L L VNQ+ P + + +N L + +N + P +
Sbjct: 195 LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGT 252
Query: 211 XXXXXFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPS 269
+++ +L + L++ NQ+S S+ L NLS L L+L +N L
Sbjct: 253 NQISDINAVK----DLTKLKXLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDXE 305
Query: 270 VIGNLESLLQLDLSENQLSGSIPIS 294
VIG L +L L LS+N ++ P++
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
GT + + S+P I + Q+L + N I P L +L +L L NQL G
Sbjct: 21 GTTVDCRSKRHASVPAGIPTN--AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 530 GMPFEL-GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIH 588
+P + SLT+L LDL N+L L+ L+ L + N+ + ++P +E+L H
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTH 136
Query: 589 LSKLDLSYNFLGKEMP 604
L+ L L N L K +P
Sbjct: 137 LTHLALDQNQL-KSIP 151
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
S +T+D +++ S+P G +N ILYL+ N ++ P V +L +L +L L NQL
Sbjct: 20 SGTTVD-CRSKRHASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76
Query: 288 SGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
G++P+ + +L+ LTV+ L +N L+ + L L L + N+L
Sbjct: 77 -GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDL 594
G T Q L L N++ P +L+ L+ L L +NQ + +P+ V + L L+ LDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDL 95
Query: 595 SYNFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ----G 649
N L +P + + + L++L +C N L+ +PR E + +L+H+ + N+L+ G
Sbjct: 96 GTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHG 153
Query: 650 PIPNSTTFKDARMEGNKGLC 669
++ A + GN C
Sbjct: 154 AFDRLSSLTHAYLFGNPWDC 173
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
L L NQ++ P +L NL LYL SN L V +L L LDL NQL+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 292 PISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
L L + + N L+ +P + L L+ L L NQL +
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSI 150
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V +L ++ LDL NQL+ L +L L++ N L+ +P I L L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 282 LSENQLSGSIPI-SLGNLSSLTVMSLFSN 309
L +NQL SIP + LSSLT LF N
Sbjct: 142 LDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 98 LQEFAFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPEI-GHLN 155
L+ F S +L L L N G +P V +L++L LDLG NQLT V+P + L
Sbjct: 55 LEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLV 112
Query: 156 QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNL 191
L+ L+ N+L +P+ I +L+ + LAL N L
Sbjct: 113 HLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL 147
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 36/233 (15%)
Query: 379 CTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPK-SLRNLTSLERVRFNQNNLSGKVYE 437
C+ + +P S+ + T L+++ N+LS + + LT+L + + N+L+ E
Sbjct: 25 CSKQQLPNVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497
AF PNL +LDLS N+ + L F+ S + L+VL
Sbjct: 83 AFVPVPNLRYLDLSSNHLHT-----------LDEFLFS-------------DLQALEVLL 118
Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFEL----GSLTELQYLDLSANKLRS 553
+ +NHIV + L KL LS NQ+S P EL L +L LDLS+NKL+
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 554 WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ 606
+P + +L KL + N ++ P+E + ++ Y L M FQ
Sbjct: 178 -LP--LTDLQKLPAW-VKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQ 226
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
LDLS N L F +L L +L LY+N + + ++ L +L LS+NQ+S
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151
Query: 292 PISL---GN-LSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
P+ L GN L L ++ L SN L L L + GL+++
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 531 MPFELGSLTELQYLDLSAN---KLRS-WIPKSIGNLLKL----RYLNLSNNQFIQKIPIE 582
+P L S T L LDLS N +LR+ W P + NL L +LN +++ +P
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-- 88
Query: 583 VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDI 642
+L LDLS N L F ++++LE L L +N++ FE M L + +
Sbjct: 89 -----NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 643 SYNEL 647
S N++
Sbjct: 144 SQNQI 148
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 232 LDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS 290
LDLS N LS ++ L+NL L L N L+ + +L LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 291 IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
+L +L V+ L++N + ++ L L L NQ+
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
S +T+D S L+ S+P + + +LYLY N ++ P V L L +LDL NQL
Sbjct: 10 SGTTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
+ L+ LT +SL N L S NL+SL+ + L
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
QVL + N I P +L L +L L NQL+ LT+L L L+ N+L+S
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 554 WIPKSIGNLLKLRYLNLSNN 573
+ NL L ++ L NN
Sbjct: 93 IPRGAFDNLRSLTHIWLLNN 112
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
+ L L N+++ P L+ L L L +N L+ V L L QL L++NQL
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 288 SGSIPI-SLGNLSSLTVMSLFSN 309
SIP + NL SLT + L +N
Sbjct: 91 K-SIPRGAFDNLRSLTHIWLLNN 112
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 124 PPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQL 167
P L++L LDL NNQLT + L QL L + NQL
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGV 146
++L S GL TL + F L LNL +N + +L++L L L NNQL +
Sbjct: 40 LDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 147 IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXX 206
HL QL LY NQL +L+ + EL L N L IP
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAG-------- 149
Query: 207 XXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLS 264
FD L ++ TL LS NQL S+P + L L + L+ N
Sbjct: 150 --------AFD-------KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
LT+L +L+L N+L++ +L +L L L+NNQ + +P+ V + L L KL L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGG 116
Query: 597 NFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
N L K +P + + + L++L L N L F+ + NL + +S N+LQ
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSL-GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQL 280
V +L + TL L+ NQL+ S+P + +L+ L LYL N L V L L +L
Sbjct: 78 VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 281 DLSENQLSGSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
L+ NQL SIP + L++L +SL +N L S L L + L NQ +
Sbjct: 137 RLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
E++ L+ F LT+L+L N + + + +LGT ++ N ++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 482 SIPLEIGESF-KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
S+PL + + +L L + N + +L L +L L+ NQL LT
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
LQ L LS N+L+S + L KL+ + L NQF
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 8/174 (4%)
Query: 475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFE 534
S++++ IP + + LD+ S + L L L L NQL
Sbjct: 25 SLDSVPSGIPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 535 LGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLD 593
LTEL L L+ N+L S +L +L L L NQ ++ +P V ++L L +L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELR 137
Query: 594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
L+ N L + +L+ L+L N L F+ + L I + N+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLG 600
++ DLS +K+ + + + L L L+ N+ + L HL KL+LS NFLG
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 601 KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653
N+ LE L+L +N++ + F G+ NL + + N+L+ +P+
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V + + L L++N+++ + L++L L L N L + NL+ L LD
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340
LS N + S L +L ++L +N L S I L SL + LH N + P
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 98 LQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL 157
+ + AF HL+ LNLS N + NL KL+ LDL N + + L L
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373
Query: 158 RSLYFDVNQLHGPIPQEI 175
+ L D NQL +P I
Sbjct: 374 KELALDTNQLKS-VPDGI 390
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 25/216 (11%)
Query: 445 LTFLDLSQNNFYGEIS---FNWRNFPKLGTFIVS----MNNISGSIPLEIGESFKLQVLD 497
+T LDLS N F ++ F+ K+ + I+S M + G + ++F + L+
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557
S V + +K+F+L K + S T+L+ L L+ N++
Sbjct: 274 ASG---VKTCDLSKSKIFALLKSVFS-------------HFTDLEQLTLAQNEINKIDDN 317
Query: 558 SIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKL 616
+ L L LNLS N F+ I + E L L LDLSYN + + +L++L
Sbjct: 318 AFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 617 NLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652
L N L F+ + +L I + N P
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 87 INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGV 146
++L S GL TL + F L LNL +N + +L++L L L NNQL +
Sbjct: 40 LDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 147 IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXXXXXX 206
HL QL LY NQL +L+ + EL L N L IP
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAG-------- 149
Query: 207 XXXXXXXXXFDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLS 264
FD L ++ TL LS NQL S+P + L L + L+ N
Sbjct: 150 --------AFDK-------LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
LT+L +L+L N+L++ +L +L L L+NNQ + +P+ V + L L KL L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGG 116
Query: 597 NFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
N L K +P + + + L++L L N L F+ + NL + +S N+LQ
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSL-GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQL 280
V +L + TL L+ NQL+ S+P + +L+ L LYL N L V L L +L
Sbjct: 78 VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 281 DLSENQLSGSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
L+ NQL SIP + L++L +SL +N L S L L + L NQ +
Sbjct: 137 RLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG 481
E++ L+ F LT+L+L N + + + +LGT ++ N ++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 482 SIPLEIGESF-KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540
S+PL + + +L L + N + +L L +L L+ NQL LT
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
LQ L LS N+L+S + L KL+ + L NQF
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 8/174 (4%)
Query: 475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFE 534
S++++ IP + + LD+ S + L L L L NQL
Sbjct: 25 SLDSVPSGIPADT------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 535 LGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLD 593
LTEL L L+ N+L S +L +L L L NQ ++ +P V ++L L +L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELR 137
Query: 594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
L+ N L + +L+ L+L N L F+ + L I + N+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 12/259 (4%)
Query: 400 VNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI 459
+N+ ++ S + R T ++ + +L+G G + +L L L+ N+F
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMN-SLKKLVLNANSFDQLC 316
Query: 460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFK-LQVLDISSNHIVGE--IPVQLAKLFS 516
N +FP L + N + E + LQ LD+S + I +QL L
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKS-IGNLLKLRYLNLSN--- 572
L L LS N+ G +L+ LD++ L P S NL LR LNLS+
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 573 NQFIQKIPIEVEKLIHLSKLDLSYN--FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC 630
+ Q + ++ L HL+ S+ + K Q+ + SLE L L NL +
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQM--VGSLEILILSSCNLLSIDQQA 494
Query: 631 FEGMHNLSHIDISYNELQG 649
F G+ N++H+D+S+N L G
Sbjct: 495 FHGLRNVNHLDLSHNSLTG 513
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 26/165 (15%)
Query: 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKL 551
++Q LD+++ H+ G +P + + SL KL+L+ N S L+ L + N
Sbjct: 278 RVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN-- 334
Query: 552 RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE--MPFQICN 609
+R L+L +EKL +L KLDLS++ + Q+ N
Sbjct: 335 -------------MRKLDLGTRC--------LEKLENLQKLDLSHSDIEASDCCNLQLKN 373
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS 654
++ L+ LNL +N G + F+ L +D+++ L P+S
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 11/218 (5%)
Query: 444 NLTFLDLSQNNFYGEISFNW--RNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
NL LDLS ++ N +N L +S N G E +L++LD++
Sbjct: 350 NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFT 409
Query: 502 HIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW-IPKSI 559
H+ + P L L L LS L L L +L++L+L N + I K+
Sbjct: 410 HLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT- 468
Query: 560 GNLLK----LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615
NLL+ L L LS+ + L +++ LDLS+N L + + ++K L
Sbjct: 469 -NLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-Y 526
Query: 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653
LN+ NN+ P + S I++S+N L N
Sbjct: 527 LNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSN 564
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 230 STLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289
+T+D S L+ S+P + + +LYLY N ++ P V L L +LDL NQL+
Sbjct: 12 TTVDCSGKSLA-SVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
L+ LT +SL N L S NLKSL+ + L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
GT + S+P I + QVL + N I P +L L +L L NQL+
Sbjct: 11 GTTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 530 GMPFELGSLTELQYLDLSANKLRSWIPK-SIGNLLKLRYLNLSNNQF 575
LT+L L L+ N+L+S IP+ + NL L ++ L NN +
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPW 114
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 544 LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM 603
+D S L S +P I ++ YL +NQ + P ++L L++LDL N L +
Sbjct: 14 VDCSGKSLAS-VPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVL 69
Query: 604 PFQICN-MKSLEKLNLCHNNLSGFIPR-CFEGMHNLSHI 640
P + + + L +L+L N L IPR F+ + +L+HI
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHI 107
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI 293
L NQ++ P L+ L L L +N L+ V L L QL L++NQL SIP
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95
Query: 294 -SLGNLSSLTVMSLFSNSLSSFIPPIL 319
+ NL SLT + L +N IL
Sbjct: 96 GAFDNLKSLTHIWLLNNPWDCACSDIL 122
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 138/317 (43%), Gaps = 28/317 (8%)
Query: 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKS--LRNLTSLERVRFNQNNL-S 432
L+L ++++ P + L L + + LS + K RNL +L R+ ++N + S
Sbjct: 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137
Query: 433 GKVYEAFGYHPNLTFLDLSQNNFY--GEISFNWRNFPKLGTFIVSMNNISGSIPLEIGES 490
++ +FG +L +D S N + E L F ++ N++ + ++ G+
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Query: 491 FK------LQVLDISSNHIVGEIPVQLAKLFSLNK---LILSLNQLSGGMPFE------- 534
L++LD+S N +I + S ++ LIL+ + + G F
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 535 --LGSLTE--LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHL 589
L +++LDLS + S + L L+ LNL+ N+ I KI E L +L
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNL 316
Query: 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649
L+LSYN LG+ + + ++L N+++ + F+ + L +D+ N L
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT- 375
Query: 650 PIPNSTTFKDARMEGNK 666
I + D + GNK
Sbjct: 376 TIHFIPSIPDIFLSGNK 392
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 26/264 (9%)
Query: 413 KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI-SFNWRNFPKLGT 471
+ L L+ + N ++ EAF NL L+LS N GE+ S N+ PK+
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAY 342
Query: 472 FIVSMNNISGSIPLEIGESFKLQVLDISSN-----HIVGEIP---------VQLAKL-FS 516
+ N+I+ KLQ LD+ N H + IP V L K+ +
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 517 LNKLILSLNQLSG-GMPFELGSLTELQYLDLSANKLRSWI-PKSIGNLLKLRYLNLSNNQ 574
N + LS N+L + + L + LQ L L+ N+ S ++ L L L N
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 575 FIQKIPIEV-----EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPR 629
E+ E L HL L L++N+L P ++ +L L+L N L+
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522
Query: 630 CFEGMHNLSHIDISYNELQGPIPN 653
NL +DIS N+L P P+
Sbjct: 523 DLPA--NLEILDISRNQLLAPNPD 544
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 97/239 (40%), Gaps = 31/239 (12%)
Query: 437 EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV- 495
EAF PNL LDL + Y ++ L + +S ++ L+ G L+
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV-LKDGYFRNLKAL 125
Query: 496 --LDISSNHIVG-EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL--TELQYLDLSANK 550
LD+S N I + KL SL + S NQ+ EL L L + L+AN
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 551 LRSWIPKSIGNLLK------LRYLNLSNNQFIQKIPIEVEKLIHLSK---LDLSYNFLGK 601
L S + G + L L++S N + I I S+ L L+++ +G
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 602 EMPFQICNMK-------------SLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
F N+K S+ L+L H + R FE + +L ++++YN++
Sbjct: 246 GFGFH--NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS 312
L LYL NSL+ +P+ I NL +L LDLS N+L+ S+P LG+ L F N ++
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 313 SFIPPILGNLKSLSALGLHINQL 335
+ +P GNL +L LG+ N L
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPL 328
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
LQ+ +IS+N + K L +L L+ N L+ +P E+ +L+ L+ LDLS N+L
Sbjct: 234 LQIFNISAN---------IFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT 283
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKS 612
S +P +G+ +L+Y +N + +P E L +L L + N L K+ +I KS
Sbjct: 284 S-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQF-LKILTEKS 340
Query: 613 LEKL 616
+ L
Sbjct: 341 VTGL 344
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 123 IPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQL 178
+P ++ NLS L+ LDL +N+LT +P E+G QL+ YF + + +P E G L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNL 315
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
+P EI L+VLD+S N + +P +L F L K + + +P+E G+L L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQL-KYFYFFDNMVTTLPWEFGNLCNL 318
Query: 542 QYLDLSANKLR 552
Q+L + N L
Sbjct: 319 QFLGVEGNPLE 329
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL 277
+P + NL ++ LDLS N+L+ S+P LG+ L Y + N ++ +P GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
Query: 278 LQLDLSENQLS 288
L + N L
Sbjct: 319 QFLGVEGNPLE 329
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 234 LSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPI 293
L+ NQ++ P +L NL LY SN L+ V L L QLDL++N L SIP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR 98
Query: 294 -SLGNLSSLTVMSLFSN 309
+ NL SLT + L++N
Sbjct: 99 GAFDNLKSLTHIYLYNN 115
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 117 NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIG 176
NI ++P G + Q L L NNQ+T + P HL L+ LYF+ N+L
Sbjct: 21 NIRLASVP--AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 177 QLSLINELALCHNNL 191
+L+ + +L L N+L
Sbjct: 79 KLTQLTQLDLNDNHL 93
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSF 314
L+L +N ++ P V +L +L QL + N+L+ +IP + L+ LT + L N L S
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 315 IPPILGNLKSLSALGLHIN 333
NLKSL+ + L+ N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553
Q L +++N I P L +L +L + N+L+ LT+L LDL+ N L+S
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 554 WIPKSIGNLLKLRYLNLSNN 573
+ NL L ++ L NN
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 32/262 (12%)
Query: 414 SLRNLTSLER-----VRFNQNNLSG--------KVYEA--FGYHPNLTFLDLSQNNFYGE 458
S ++ SLE+ + FN NN+ G ++++ FG PNL+ + N +
Sbjct: 166 SREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQ 225
Query: 459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFS-L 517
S F + +S + G + + ES LQ H +I + F+ L
Sbjct: 226 -SLWLGTFEDIDDEDISSAMLKGLCEMSV-ESLNLQ------EHRFSDISSTTFQCFTQL 277
Query: 518 NKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
+L L+ L G +P + L L+ L LS N S N L +L + N ++
Sbjct: 278 QELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VK 334
Query: 578 KIPIEV---EKLIHLSKLDLSYNFLGKE--MPFQICNMKSLEKLNLCHNNLSGFIPRCFE 632
K+ + V EKL +L LDLS+N + Q+ N+ L+ LNL HN G + F+
Sbjct: 335 KLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFK 394
Query: 633 GMHNLSHIDISYNELQGPIPNS 654
L +D+++ L P S
Sbjct: 395 ECPQLELLDLAFTRLHINAPQS 416
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 121/297 (40%), Gaps = 32/297 (10%)
Query: 367 IGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRF 426
+G + I + ++ + L+G S+ +L N+ E+ S + + T L+ +
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSVESL------NLQEHRFSDISSTTFQCFTQLQELDL 282
Query: 427 NQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLE 486
+L G G + L L LS N+F + NFP L + N + L
Sbjct: 283 TATHLKGLPSGMKGLNL-LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--VKKLHLG 339
Query: 487 IGESFKL---QVLDISSNHIVGE--IPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
+G KL Q LD+S N I +QL L L L LS N+ G +L
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 542 QYLDLSANKLRSWIPKS-IGNLLKLRYLNL-------SNNQFIQKIPIEVEKLIHLSKLD 593
+ LDL+ +L P+S NL L+ LNL SN + +P+ L L+
Sbjct: 400 ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV-------LRHLN 452
Query: 594 LSYNFLGKEMPFQ---ICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
L N + + + SLE L L L + F + +SH+D+S+N L
Sbjct: 453 LKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 136/331 (41%), Gaps = 28/331 (8%)
Query: 375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN----N 430
EL+L L+G +P + L L + + NH S N SL + N +
Sbjct: 279 ELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLH 337
Query: 431 LSGKVYEAFGYHPNLTFLDLSQNNFYGE--ISFNWRNFPKLGTFIVSMNNISGSIPLEIG 488
L E G NL LDLS N+ S +N L T +S N G
Sbjct: 338 LGVGCLEKLG---NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFK 394
Query: 489 ESFKLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLS 547
E +L++LD++ + P L L L L+ L L L L++L+L
Sbjct: 395 ECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLK 454
Query: 548 ANKLRS-WIPKSIGNLLK----LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE 602
N + I K+ NLL+ L L LS+ + L +S +DLS+N L +
Sbjct: 455 GNHFQDGTITKT--NLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCD 512
Query: 603 MPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS---TTFKD 659
+ ++K + LNL N+++ PR + S I++S+N L N T +K+
Sbjct: 513 SIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKE 571
Query: 660 --ARMEGN-KGLCGN---IKGLPSCKAFTSC 684
++EG+ + C N ++G+ SC
Sbjct: 572 NLHKLEGSEETTCANPPSLRGVKLSDVKLSC 602
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
SIP + E+ K LD+S+N I L + +L L+L+ N ++ SL L
Sbjct: 45 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDL----SYN 597
++LDLS N L + L L +LNL N + K E HL+KL + + +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMD 160
Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
K + LE+L + ++L + P+ + + N+SH+
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
+SIP G +++ +LDLS N+++ L NL L L SN ++ +L
Sbjct: 43 LNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
SL LDLS N LS LSSLT ++L N
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 76 ISCNQAERIISIN---LSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSK 132
IS + +R +++ L+S G+N T++E +FSS L HL+LS+N + LS
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 133 LQHLD-LGNNQLTGVIPPEIGHLNQLRSLYF-DVNQLHGPIPQEIGQLSLINELALCHNN 190
L L+ LGN T HL +L+ L +++ ++ L+ + EL + ++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 191 LYGPIPPSL 199
L P SL
Sbjct: 186 LQSYEPKSL 194
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 47/109 (43%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V L ++ L L +NQL L+NL LYLY N L V L +L +LD
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330
L NQL L+ L +SL N L S + L SL+ + L
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSY 596
L ++YL L NKL ++ L L YL L+ NQ +Q +P V +KL +L +L L
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVE 118
Query: 597 NFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648
N L + +P + + + +L L L HN L F+ + NL+ +D+ N+LQ
Sbjct: 119 NQL-QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ 170
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLS 571
KL +L +L+L NQL LT L YL L N+L+S +PK + L L L+L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLD 165
Query: 572 NNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMP 604
NNQ +Q +P V +KL L +L L+ N L K +P
Sbjct: 166 NNQ-LQSLPEGVFDKLTQLKQLSLNDNQL-KSVP 197
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%)
Query: 246 SLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMS 305
+L L+NL L L N L V L +L +L L ENQL L++LT +
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
L+ N L S + L +L+ L L NQL +
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 49/117 (41%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
L L +++ L L+ NQL L+NL L L N L V L +L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
L NQL L++LT + L +N L S + L L L L+ NQL V
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 83/228 (36%), Gaps = 33/228 (14%)
Query: 83 RIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQ 142
I NL + + + +S ++ N V G + L +++L LG N+
Sbjct: 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLALGGNK 74
Query: 143 LTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGXX 202
L + + L L L NQL +L+ + EL L N L
Sbjct: 75 LHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL----------- 121
Query: 203 XXXXXXXXXXXXXFDSIPL-VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261
S+P V L +++ L L NQL L+NL L L +N
Sbjct: 122 --------------QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
L V L L QL L++NQL L+SLT + L +N
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 482 SIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541
SIP + E+ K LD+S+N I L + +L L+L+ N ++ SL L
Sbjct: 19 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDL----SYN 597
++LDLS N L + L L +LNL N + K E HL+KL + + +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMD 134
Query: 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHI 640
K + LE+L + ++L + P+ + + N+SH+
Sbjct: 135 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 177
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
+SIP G +++ +LDLS N+++ L NL L L SN ++ +L
Sbjct: 17 LNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309
SL LDLS N LS LSSLT ++L N
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 108
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 76 ISCNQAERIISIN---LSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSK 132
IS + +R +++ L+S G+N T++E +FSS L HL+LS+N + LS
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
Query: 133 LQHLD-LGNNQLTGVIPPEIGHLNQLRSLYF-DVNQLHGPIPQEIGQLSLINELALCHNN 190
L L+ LGN T HL +L+ L +++ ++ L+ + EL + ++
Sbjct: 100 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 159
Query: 191 LYGPIPPSL 199
L P SL
Sbjct: 160 LQSYEPKSL 168
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557
ISS+ + G +P L KL L NQL+G P + +Q L L NK++ K
Sbjct: 44 ISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 558 SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYN 597
L +L+ LNL +NQ +P E L L+ L+L+ N
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
+ G L + L+L +NQL+G P + S++ L L N + + L L L+
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSN 309
L +NQ+S +P S +L+SLT ++L SN
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%)
Query: 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
F PHLV L L N + G P S +Q L LG N++ + L+QL++L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 163 DVNQLHGPIPQEIGQLSLINELALCHN 189
NQ+ +P L+ + L L N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG 329
+ G L L++L+L NQL+G P + S + + L N + + L L L
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 330 LHINQLNGVIPSSI 343
L+ NQ++ V+P S
Sbjct: 109 LYDNQISCVMPGSF 122
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
P LT L L +N+ + N PKL T +S NN+ + LQ L +SSN
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSG-GMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
+ V L+ + SL +S N LS +P ++ EL S N +R + +
Sbjct: 177 LTH---VDLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINVVRGPVNVELT- 229
Query: 562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621
+LKL++ NL++ ++ P VE +DLSYN L K M M+ LE+L + +N
Sbjct: 230 ILKLQHNNLTDTAWLLNYPGLVE-------VDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 622 NLSGF 626
L
Sbjct: 283 RLVAL 287
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 32/299 (10%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
+L + + + L+L+ Q+ ++ + LY+ N++ P V N+ L L
Sbjct: 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123
Query: 282 LSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-- 338
L N LS S+P + N LT +S+ +N+L SL L L N+L V
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182
Query: 339 --IPS----SIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIG 392
IPS ++ I ++ +EL +L+
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH------N 236
Query: 393 NLTE---------LVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH- 442
NLT+ LV V++ N L + + LER+ + N L +G
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPI 294
Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
P L LDLS N+ + N F +L + N+I + L++ L+ L +S N
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 349
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
P LT L L +N+ + N PKL T +S NN+ + LQ L +SSN
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLSG-GMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
+ V L+ + SL +S N LS +P ++ EL S N +R + +
Sbjct: 183 LTH---VDLSLIPSLFHANVSYNLLSTLAIPI---AVEELDASHNSINVVRGPVNVELT- 235
Query: 562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621
+LKL++ NL++ ++ P VE +DLSYN L K M M+ LE+L + +N
Sbjct: 236 ILKLQHNNLTDTAWLLNYPGLVE-------VDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 622 NLSGF 626
L
Sbjct: 289 RLVAL 293
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
+L + + + L+L+ Q+ ++ + LY+ N++ P V N+ L L
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129
Query: 282 LSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-- 338
L N LS S+P + N LT +S+ +N+L SL L L N+L V
Sbjct: 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188
Query: 339 --IPS 341
IPS
Sbjct: 189 SLIPS 193
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 56 NATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLS 115
N+ N +Y +T CAW AE I+ +NLSS L G++ F P V +
Sbjct: 413 NSLNSHAYDRT----CAW-------AESILVLNLSSNMLTGSV----FRCLPPKVKVLDL 457
Query: 116 FNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYF 162
N +IP V +L LQ L++ +NQL V P+ G ++L SL +
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSV--PD-GVFDRLTSLQY 501
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 217 DSIPLVLGNLKSISTLDLSKNQLSGSIPFSL--GNLSNLGILYLYSNSL-SGPIPSVIGN 273
DS+ LK + TL L +N L +L N+S+L L + NSL S
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426
Query: 274 LESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
ES+L L+LS N L+GS+ L + V+ L +N + S IP + +L++L L + N
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483
Query: 334 QLNGV 338
QL V
Sbjct: 484 QLKSV 488
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN---NFYGEISFNWRNFPKLGTFIVS 475
+S + F QN + V++ L L L +N NF+ +++ +N L T VS
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVS 411
Query: 476 MNNI-SGSIPLEIGESFKLQVLDISSNHIVGEI----PVQLAKLFSLNKLILSLNQLSGG 530
+N++ S + + + VL++SSN + G + P ++ L N I+S+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI------ 465
Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP 580
P ++ L LQ L++++N+L+S L L+Y+ L +N + P
Sbjct: 466 -PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286
+SI L+LS N L+GS+ L + +L L++N + IP + +L++L +L+++ NQ
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ 484
Query: 287 LSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS 342
L L+SL + L N P I L IN+ +GV+ +S
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI-------RYLSEWINKHSGVVRNS 533
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPF--ELGSLTELQYLDLSAN 549
L+ LD+S N + + + SL L LS N +P E G+LT+L +L LSA
Sbjct: 101 DLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAA 156
Query: 550 KLRSWIPKSIGNLLKLRYLNLS 571
K R +LL + +L+LS
Sbjct: 157 KFRQL------DLLPVAHLHLS 172
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
+ L + ++ S N+++ + S + + L SN L + LESL L
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
L N+++ S LSS+ ++SL+ N +++ P L SLS L L N N
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 34/229 (14%)
Query: 443 PNLTFLDLSQNNFYGEISF-NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
P+ LDL QNN EI +++N L T I+ N IS P KL+ L +S N
Sbjct: 52 PDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 502 HIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
+ E+P ++ K +L +L + N+++ L ++ ++L N L+S
Sbjct: 111 QL-KELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS------- 160
Query: 562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621
+ N F ++KL ++ D + + + +P SL +L+L N
Sbjct: 161 -------GIENGAFQG-----MKKLSYIRIADTNITTIPQGLP------PSLTELHLDGN 202
Query: 622 NLSGFIPRCFEGMHNLSHIDISYNELQ----GPIPNSTTFKDARMEGNK 666
++ +G++NL+ + +S+N + G + N+ ++ + NK
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS 590
+P +L T L LDL NK+ NL L L L NN+ + P L+ L
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 591 KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGP 650
+L LS N L KE+P ++ K+L++L + N ++ F G++ + +++ N L+
Sbjct: 104 RLYLSKNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-- 158
Query: 651 IPNSTTFKDARMEGNKGL 668
S+ ++ +G K L
Sbjct: 159 ---SSGIENGAFQGMKKL 173
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
S++ L L N+++ SL L+NL L L NS+S + N L +L L+ N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSS-----FIPP 317
+P L + + V+ L +N++S+ F PP
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 34/229 (14%)
Query: 443 PNLTFLDLSQNNFYGEISF-NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501
P+ LDL QNN EI +++N L T I+ N IS P KL+ L +S N
Sbjct: 52 PDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 502 HIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGN 561
+ E+P ++ K +L +L + N+++ L ++ ++L N L+S
Sbjct: 111 QL-KELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS------- 160
Query: 562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621
+ N F ++KL ++ D + + + +P SL +L+L N
Sbjct: 161 -------GIENGAFQG-----MKKLSYIRIADTNITTIPQGLP------PSLTELHLDGN 202
Query: 622 NLSGFIPRCFEGMHNLSHIDISYNELQ----GPIPNSTTFKDARMEGNK 666
++ +G++NL+ + +S+N + G + N+ ++ + NK
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 531 MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS 590
+P +L T L LDL NK+ NL L L L NN+ + P L+ L
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 591 KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGP 650
+L LS N L KE+P ++ K+L++L + N ++ F G++ + +++ N L+
Sbjct: 104 RLYLSKNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-- 158
Query: 651 IPNSTTFKDARMEGNKGL 668
S+ ++ +G K L
Sbjct: 159 ---SSGIENGAFQGMKKL 173
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
S++ L L N+++ SL L+NL L L NS+S + N L +L L+ N+L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 288 SGSIPISLGNLSSLTVMSLFSNSLSS-----FIPP 317
+P L + + V+ L +N++S+ F PP
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 537 SLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK-IPIEVEKLIHLSKLDLS 595
SL L YLD+S R L L L ++ N F + +P +L +L+ LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 596 YNFLGKEMPFQICNMKSLEKLNLCHNN---LSGFIPRCFEGM----HNLSHIDISYNELQ 648
L + P ++ SL+ LN+ HNN L F +C + ++L+HI S +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 649 GPIPNSTTF 657
P+S F
Sbjct: 244 QHFPSSLAF 252
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 88/213 (41%), Gaps = 8/213 (3%)
Query: 418 LTSLERVRFNQNNLSGK---VYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIV 474
LT L ++ + N LS K FG +L +LDLS N +S N+ +L
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 108
Query: 475 SMNNISGSIPLEIGESFK-LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG-MP 532
+N+ + S + L LDIS H L SL L ++ N +P
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 533 FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKL 592
L L +LDLS +L P + +L L+ LN+S+N F + L L L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228
Query: 593 DLSYNFLGKEMPFQICNM-KSLEKLNLCHNNLS 624
D S N + ++ + SL LNL N+ +
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP-IPSVIGNLESLLQL 280
V +L+++ LD+S + LS+L +L + NS +P + L +L L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 281 DLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
DLS+ QL P + +LSSL V+++ N+ S L SL L +N +
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 362 FVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL 421
F+P+ L+++ L+L +L P + +L+ L ++NM N+ + L SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
Query: 422 ERVRFNQNN-LSGKVYEAFGYHPNLTFLDLSQNNF 455
+ + ++ N+ ++ K E + +L FL+L+QN+F
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNH 502
P+ T LDL N+ +++ L ++ N IS KLQ L IS NH
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 503 IVGEIPVQLAKLFSLNKLILSLNQLS------------------GGMP-----FELGSLT 539
+V EIP L SL +L + N++ GG P FE G+
Sbjct: 114 LV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 540 --ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK---LDL 594
+L YL +S KL + IPK + L L+L +N+ IQ IE+E L+ SK L L
Sbjct: 171 GLKLNYLRISEAKL-TGIPKDLPE--TLNELHLDHNK-IQA--IELEDLLRYSKLYRLGL 224
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISY 644
+N + + + +L +L+L +N LS R G+ +L + + Y
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLLQVVY 270
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
GT + + S+P G + LD+ +N + +L SL +L L N+L
Sbjct: 9 GTTVECYSQGRTSVP--TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66
Query: 530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIH 588
LT L YL+LS N+L+S L +L+ L L+ NQ +Q +P V +KL
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ 125
Query: 589 LSKLDLSYNFLGKEMP 604
L L L N L K +P
Sbjct: 126 LKDLRLYQNQL-KSVP 140
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 232 LDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI 291
LDL N L L++L LYL N L V L SL L+LS NQL S+
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 292 PISL-GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
P + L+ L ++L +N L S + L L L L+ NQL V
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
L L++S+N + KL L +L L+ NQL LT+L+ L L N+L+
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIP 580
S L L+Y+ L +N + P
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 552 RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICN- 609
R+ +P I + YL+L N ++ +P V ++L L++L L N L + +P + N
Sbjct: 19 RTSVPTGIP--AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNK 74
Query: 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ----GPIPNSTTFKDARMEGN 665
+ SL LNL N L F+ + L + ++ N+LQ G T KD R+ N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 666 K 666
+
Sbjct: 135 Q 135
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 362 FVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL 421
VP+E+ K + ++L NR+ S N+T+L+ + + N L P++ L SL
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNW 463
+ + N++S AF L+ L + N Y + + W
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 524 LNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV 583
L L G+P ++ TEL YLD N+ + +PK + N L ++LSNN+
Sbjct: 22 LKVLPKGIPRDV---TEL-YLD--GNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 584 EKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS 643
+ L L LSYN L P +KSL L+L N++S F + LSH+ I
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
Query: 644 YNEL 647
N L
Sbjct: 135 ANPL 138
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315
LYL N + +P + N + L +DLS N++S S N++ L + L N L
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 316 PPILGNLKSLSALGLHINQLNGVIP 340
P LKSL L LH N ++ V+P
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS-VVP 118
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 507 IPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLR 566
+P +L+ L + LS N++S ++T+L L LS N+LR P++ L LR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 567 YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSL 613
L+L N L LS L + N L + CNM+ L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL-----YCDCNMQWL 147
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 120 FGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLS 179
F +P ++ N L +DL NN+++ + ++ QL +L N+L P+ L
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 180 LINELALCHNNLYGPIP 196
+ L+L H N +P
Sbjct: 103 SLRLLSL-HGNDISVVP 118
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 85 ISINLSSMGLNG---TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNN 141
I +++ + L+G TL S++ HL ++LS N + N+++L L L N
Sbjct: 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 142 QLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192
+L + P L LR L N + LS ++ LA+ N LY
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 111/283 (39%), Gaps = 49/283 (17%)
Query: 374 FELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG 433
F +CT R +P I + T + N+ EN++ + R+L LE ++ +N++
Sbjct: 56 FSKVVCTRRGLSEVPQGIPSNTRYL--NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 434 KVYEAFGYHPNLTFLDLSQN----------NFYGEISFNW-RNFPKLGTFIVSMNNISGS 482
AF +L L+L N + ++ W RN P + N +
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 483 IPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQ 542
+ L++GE KL+ IS G LF+L L L + + MP L L L+
Sbjct: 174 MRLDLGELKKLEY--ISEGAFEG--------LFNLKYLNLGMCNIKD-MP-NLTPLVGLE 221
Query: 543 YLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE 602
L++S N P S L L+ L + N+Q LI + D
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV---------SLIERNAFD--------- 263
Query: 603 MPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
+ SL +LNL HNNLS F + L + + +N
Sbjct: 264 ------GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 117/299 (39%), Gaps = 30/299 (10%)
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVI 339
LDL +N++ + L + L N +S+ P NL +L LGL N+L +I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 340 PSSIXXXXXXXXXXXXXXXXXXFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVL 399
P + L ++ +L++ N++ + + +L L
Sbjct: 96 PLGVFTG-----------------------LSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 400 VNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI 459
+ + +N L ++ L SLE++ + NL+ EA + L L L N
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNK 519
++++ +L +S ++ L L I+ ++ + + L L
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 520 LILSLNQLS---GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
L LS N +S G M EL L E+Q L +L P + L LR LN+S NQ
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQ---LVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 97 TLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQL 143
TL + F+SFPHL L L+ NIV P NL L+ L L +N+L
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 118/279 (42%), Gaps = 14/279 (5%)
Query: 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV 435
L+L NR++ + L + + EN +S P + NL +L + N L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 436 YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI-----SGSIPLEIGES 490
F NLT LD+S+N + + +++ L + V N++ L E
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 491 FKLQVLDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSA- 548
L+ +++S IP + L+ L L L L ++ + L L+ L++S
Sbjct: 157 LTLEKCNLTS------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 549 NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC 608
L + P + L L L++++ + V L++L L+LSYN + +
Sbjct: 211 PYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
Query: 609 NMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
+ L+++ L L+ P F G++ L +++S N+L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%)
Query: 229 ISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288
+ L+L++N +S P + NL NL L L SN L V L +L +LD+SEN++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV 338
+ +L +L + + N L L SL L L L +
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLE 614
+P+ I + R L+L N+ E HL +L+L+ N + P N+ +L
Sbjct: 26 VPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 615 KLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647
L L N L F G+ NL+ +DIS N++
Sbjct: 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSS 313
+L+LY N ++ P V +L L L+L+ NQL+ ++P+ + L+ LT ++L N L S
Sbjct: 44 VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGVFDKLTKLTHLALHINQLKS 102
Query: 314 FIPPILGNLKSLSALGL 330
+ NLKSL+ + L
Sbjct: 103 IPMGVFDNLKSLTHIYL 119
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE 582
SL + G+P T Q L L N++ P +L +L YLNL+ NQ + +P+
Sbjct: 30 SLASVPAGIP------TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQ-LTALPVG 82
Query: 583 V-EKLIHLSKLDLSYNFLGKEMPFQIC-NMKSLEKLNLCHN 621
V +KL L+ L L N L K +P + N+KSL + L +N
Sbjct: 83 VFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNN 122
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 520 LILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKI 579
L L +NQ++ P SLT+L YL+L+ N+L + L KL +L L NQ ++ I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ-LKSI 103
Query: 580 PIEV 583
P+ V
Sbjct: 104 PMGV 107
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLS 326
+P+ I +L L + NQ++ P +L+ LT ++L N L++ + L L+
Sbjct: 34 VPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 327 ALGLHINQLNGV 338
L LHINQL +
Sbjct: 92 HLALHINQLKSI 103
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 470 GTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529
GT + S+P I + QVL + N I P L L L L++NQL+
Sbjct: 21 GTTVNCQERSLASVPAGIPTT--TQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Query: 530 GMPFELGSLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQF 575
LT+L +L L N+L+S IP + NL L ++ L NN +
Sbjct: 79 LPVGVFDKLTKLTHLALHINQLKS-IPMGVFDNLKSLTHIYLFNNPW 124
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
+ L L NQ++ P +L+ L L L N L+ V L L L L NQL
Sbjct: 41 TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Query: 288 SGSIPISL-GNLSSLTVMSLFSN 309
SIP+ + NL SLT + LF+N
Sbjct: 101 K-SIPMGVFDNLKSLTHIYLFNN 122
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V L ++ L LS+NQ+ L+ L ILYL+ N L V L L +L
Sbjct: 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 282 LSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSFIPPI 318
L NQL S+P + L+SL + L +N P I
Sbjct: 107 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%)
Query: 256 LYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315
L L SN L V L L +L LS+NQ+ L+ LT++ L N L S
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 316 PPILGNLKSLSALGLHINQLNGV 338
+ L L L L NQL V
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSV 115
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 513 KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572
KL L KL LS NQ+ LT+L L L NKL+S L +L+ L L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 573 NQFIQKIPIEV-EKLIHLSKLDLSYN 597
NQ ++ +P + ++L L K+ L N
Sbjct: 110 NQ-LKSVPDGIFDRLTSLQKIWLHTN 134
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575
S +L L N+L LT+L L LS N+++S L KL L L N+
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK- 87
Query: 576 IQKIPIEV-EKLIHLSKLDLSYNFLGKEMPFQICN-MKSLEKLNLCHNNLSGFIPR 629
+Q +P V +KL L +L L N L K +P I + + SL+K+ L N PR
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 121/498 (24%), Positives = 192/498 (38%), Gaps = 98/498 (19%)
Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
F SIP G ++ +LDLS N+++ L +NL +L L S+ ++ +L
Sbjct: 43 FTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALGL---- 330
SL LDLS+N LS G LSSL ++L N + + + NL +L L +
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 160
Query: 331 ---HINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYL-----KSIFELELCTNR 382
I +++ +S+ +I +L +S F LE+ +
Sbjct: 161 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 220
Query: 383 LRG--GIPHSIGNLTELVLVNMCENHLSGPIP------------------KSLRNLTSLE 422
L + NL + + +S P+ K LR + L
Sbjct: 221 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 280
Query: 423 RVRFNQNNLSG---------KVYEAFGYHPNLTFLDLSQNNFY--GEISFNWRNFPKLGT 471
V F+ L+G V G +T L FY ++S + K+
Sbjct: 281 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 340
Query: 472 FIVSMNNISGSIPLEIGESFK-LQVLDISSNHIVGEIPVQLA---KLFSLNKLILSLNQL 527
V N+ +P + K L+ LD+S N +V E A SL L+LS N L
Sbjct: 341 ITVE-NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 399
Query: 528 -----SGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE 582
+G + L +LT LD+S N +P S K+R+LNLS+ I
Sbjct: 400 RSMQKTGEILLTLKNLTS---LDISRNTFHP-MPDSCQWPEKMRFLNLSSTG------IR 449
Query: 583 VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSG---FIPRCFEGMHNLSH 639
V K C ++LE L++ +NNL F+PR L
Sbjct: 450 VVK---------------------TCIPQTLEVLDVSNNNLDSFSLFLPR-------LQE 481
Query: 640 IDISYNELQGPIPNSTTF 657
+ IS N+L+ +P+++ F
Sbjct: 482 LYISRNKLKT-LPDASLF 498
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 275 ESLLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ NQL+ +P L N L +L + L NSL +
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NNQ +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
L +++ + G +PV L L LS NQL +P +L L LD+S N+L
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN-MK 611
S ++ L +L+ L L N+ P + L KL L+ N L E+P + N ++
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLE 172
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMH 635
+L+ L L N+L IP+ F G H
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSH 195
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
++ +L+K Q+ G++P LG L L N L +P + L +L LD+S N+L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 288 SGSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
+ S+P+ +L L L + L N L + P +L L L L NQL
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 560 GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL-------------------- 599
G L L L+LS+NQ +Q +P+ + L L+ LD+S+N L
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 600 GKEM----PFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN-- 653
G E+ P + LEKL+L +N L+ G+ NL + + N L IP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Query: 654 --STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 192 FGSHLLPFAFLHGNPWLC 209
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ NQL+ +P L N L +L + L NSL +
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NNQ +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
L +++ + G +PV L L LS NQL +P +L L LD+S N+L
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN-MK 611
S ++ L +L+ L L N+ P + L KL L+ N L E+P + N ++
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLE 172
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMH 635
+L+ L L N+L IP+ F G H
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSH 195
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
++ +L+K Q+ G++P LG L L N L +P + L +L LD+S N+L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 288 SGSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
+ S+P+ +L L L + L N L + P +L L L L NQL
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ NQL+ +P L N L +L + L NSL +
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NNQ +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
L +++ + G +PV L L LS NQL +P +L L LD+S N+L
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN-MK 611
S ++ L +L+ L L N+ P + L KL L+ N L E+P + N ++
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLE 172
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMH 635
+L+ L L N+L IP+ F G H
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSH 195
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
++ +L+K Q+ G++P LG L L N L +P + L +L LD+S N+L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 288 SGSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
+ S+P+ +L L L + L N L + P +L L L L NQL
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNL 274
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 275 ESLLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ NQL+ +P L N L +L + L NSL +
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS 537
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L
Sbjct: 71 QVDGTLPV-------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
L ELQ L L N+L++ P + KL L+L+NNQ +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
L +++ + G +PV L L LS NQL +P +L L LD+S N+L
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN-MK 611
S ++ L +L+ L L N+ P + L KL L+ N L E+P + N ++
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLE 172
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMH 635
+L+ L L N+L IP+ F G H
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSH 195
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
++ +L+K Q+ G++P LG L L N L +P + L +L LD+S N+L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 288 SGSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336
+ S+P+ +L L L + L N L + P +L L L L NQL
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 560 GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL-------------------- 599
G L L L+LS+NQ +Q +P+ + L L+ LD+S+N L
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 600 GKEM----PFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN-- 653
G E+ P + LEKL+L +N L+ G+ NL + + N L IP
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Query: 654 --STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 192 FGSHLLPFAFLHGNPWLC 209
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ N L+ +P L N L +L + L NSL +
Sbjct: 150 LEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552
L +++ + G +PV L L LS NQL +P +L L LD+S N+L
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN-MK 611
S ++ L +L+ L L N+ P + L KL L+ N L E+P + N ++
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL-TELPAGLLNGLE 172
Query: 612 SLEKLNLCHNNLSGFIPRCFEGMH 635
+L+ L L N+L IP+ F G H
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSH 195
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NN +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE 162
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDL 594
G+L L LDLS N+L+S +P L L L++S N+ + +P+ + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN- 653
N L P + LEKL+L +N+L+ G+ NL + + N L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 654 ---STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287
++ +L+K Q+ G++P LG L L N L +P + L +L LD+S N+L
Sbjct: 61 NLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112
Query: 288 SGSIPI-SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
+ S+P+ +L L L + L N L + P +L L L L N L
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 121/498 (24%), Positives = 192/498 (38%), Gaps = 98/498 (19%)
Query: 216 FDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLE 275
F SIP G ++ +LDLS N+++ L +NL +L L S+ ++ +L
Sbjct: 17 FTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALGL---- 330
SL LDLS+N LS G LSSL ++L N + + + NL +L L +
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 331 ---HINQLNGVIPSSIXXXXXXXXXXXXXXXXXXFVPEEIGYL-----KSIFELELCTNR 382
I +++ +S+ +I +L +S F LE+ +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 383 LRG--GIPHSIGNLTELVLVNMCENHLSGPIP------------------KSLRNLTSLE 422
L + NL + + +S P+ K LR + L
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 423 RVRFNQNNLSG---------KVYEAFGYHPNLTFLDLSQNNFY--GEISFNWRNFPKLGT 471
V F+ L+G V G +T L FY ++S + K+
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Query: 472 FIVSMNNISGSIPLEIGESFK-LQVLDISSNHIVGEIPVQLA---KLFSLNKLILSLNQL 527
V N+ +P + K L+ LD+S N +V E A SL L+LS N L
Sbjct: 315 ITVE-NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 528 -----SGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIE 582
+G + L +LT LD+S N +P S K+R+LNLS+ I
Sbjct: 374 RSMQKTGEILLTLKNLTS---LDISRNTFHP-MPDSCQWPEKMRFLNLSSTG------IR 423
Query: 583 VEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSG---FIPRCFEGMHNLSH 639
V K C ++LE L++ +NNL F+PR L
Sbjct: 424 VVK---------------------TCIPQTLEVLDVSNNNLDSFSLFLPR-------LQE 455
Query: 640 IDISYNELQGPIPNSTTF 657
+ IS N+L+ +P+++ F
Sbjct: 456 LYISRNKLKT-LPDASLF 472
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ N L+ +P L N L +L + L NSL +
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDL 594
G+L L LDLS N+L+S +P L L L++S N+ + +P+ + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN- 653
N L P + LEKL+L +NNL+ G+ NL + + N L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 654 ---STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NN +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDL 594
G+L L LDLS N+L+S +P L L L++S N+ + +P+ + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN- 653
N L P + LEKL+L +NNL+ G+ NL + + N L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 654 ---STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ N L+ +P L N L +L + L NSL +
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NN +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDL 594
G+L L LDLS N+L+S +P L L L++S N+ + +P+ + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN- 653
N L P + LEKL+L +NNL+ G+ NL + + N L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 654 ---STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ N L+ +P L N L +L + L NSL +
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NN +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 329 GLHINQLNGVIP 340
L N+L + P
Sbjct: 130 YLKGNELKTLPP 141
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 73 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDL 594
G+L L LDLS N+L+S +P L L L++S N+ + +P+ + L L +L L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 132
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN- 653
N L P + LEKL+L +NNL+ G+ NL + + N L IP
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 191
Query: 654 ---STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 192 FFGSHLLPFAFLHGNPWLC 210
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ N L+ +P L N L +L + L NSL +
Sbjct: 151 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 188
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 73 VDGTLPV-------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 124
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NN +
Sbjct: 125 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 163
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG 329
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 73 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 330 LHINQLNGVIP 340
L N+L + P
Sbjct: 132 LKGNELKTLPP 142
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 222 VLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLD 281
V G L + TLDLS NQL S+P L L +L + N L+ + L L +L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 282 LSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335
L N+L P L L +SL +N+L+ +L L++L L L N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI-EVEKLIHLSKLDL 594
G+L L LDLS N+L+S +P L L L++S N+ + +P+ + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL 131
Query: 595 SYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN- 653
N L P + LEKL+L +NNL+ G+ NL + + N L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
Query: 654 ---STTFKDARMEGNKGLC 669
S A + GN LC
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 218 SIPLVLGNLKSISTLDLSKNQLSGSIPF-SLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276
S+PL+ L +++ LD+S N+L+ S+P +L L L LYL N L P ++
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 277 LLQLDLSENQLSGSIPISLGN-LSSLTVMSLFSNSLSSF 314
L +L L+ N L+ +P L N L +L + L NSL +
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 479 ISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538
+ G++P+ L LD+S N + +P+ L +L L +S N+L+ L L
Sbjct: 72 VDGTLPV-------LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577
ELQ L L N+L++ P + KL L+L+NN +
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG 329
V G L L LDLS NQL S+P+ L +LTV+ + N L+S L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 330 LHINQLNGVIP 340
L N+L + P
Sbjct: 131 LKGNELKTLPP 141
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279
P K + +DLS NQ+S P + L +L L LY N ++ S+ L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
L L+ N+++ + +L +L ++SL+ N L + L+++ + L N
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 220 PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279
P K + +DLS NQ+S P + L +L L LY N ++ S+ L SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333
L L+ N+++ + +L +L ++SL+ N L + L+++ + L N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 444 NLTFLDLSQNNFYGEISFNWRNFPKLG----TFIVSMNNISGSIP-LEIGESFKLQVLDI 498
N+T LDLSQN ++ + L T + +N + + L++ ++ L L+
Sbjct: 75 NITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNC 134
Query: 499 SSNHIVGEIPV----QLAKL-FSLNKLILSLNQLSGGMPFELG-SLTELQYLDLSANKLR 552
+ N + EI V QL +L LNK I L+ L S ++ LD+S NKL
Sbjct: 135 ARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLL 193
Query: 553 SWIPKSIGNLLKLR--------YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGK--- 601
+ + N+ KL +L+ S+N+ + I+V L L+ D S N L +
Sbjct: 194 NRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDV 250
Query: 602 ----EMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645
++ C L +++L HN + I EG + +D+++N
Sbjct: 251 STLSKLTTLHCIQTDLLEIDLTHN--TQLIYFQAEGCRKIKELDVTHN 296
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 76 ISCNQAERIISINLSSMGLN------GTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQ-VG 128
++C +RI S+ S+ L T+ AFS+ P++ + +S ++ +
Sbjct: 18 VTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77
Query: 129 NLSKLQHLDLGNNQ-LTGVIPPEIGHLNQLRSL 160
NLSK+ H+++ N + LT + P + L L+ L
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 531 MPFEL-GSLTELQYLDLSANKLRSWIPKSI-GNLLKLRYLNLSNNQFIQKIPIEV-EKLI 587
MP L L L+ ++ +NKLR +P+ I G + KL+ LNL++NQ ++ +P + ++L
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLRQ-MPRGIFGKMPKLKQLNLASNQ-LKSVPDGIFDRLT 218
Query: 588 HLSKLDLSYN 597
L K+ L N
Sbjct: 219 SLQKIWLHTN 228
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 504 VGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSA-NKLRSWIPKSIGNL 562
+ +P +A L +L L + + LS P + L +L+ LDL LR++ P G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY-PPIFGGR 252
Query: 563 LKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDL 594
L+ L L + + +P+++ +L L KLDL
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLG 600
++ LDLS N L + KL LNLS+N + +++E L L LDL+ N++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93
Query: 601 KEMPFQICNMKSLEKLNLCHNNLS 624
++ S+E L+ +NN+S
Sbjct: 94 -----ELLVGPSIETLHAANNNIS 112
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 561 NLLKLRYLNLSNN-QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLC 619
+L+ LRY ++ N + +++ ++ K+ +SY GK +P+ N + L+K+ +
Sbjct: 343 DLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRIPYFPANQEILQKVEVE 402
Query: 620 HNNLSGF 626
+ L G+
Sbjct: 403 YETLPGW 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,476,972
Number of Sequences: 62578
Number of extensions: 729899
Number of successful extensions: 3006
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1515
Number of HSP's gapped (non-prelim): 754
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)