Query 041178
Match_columns 725
No_of_seqs 690 out of 4548
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:30:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-78 3.5E-83 725.6 48.8 584 22-672 24-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.8E-62 1E-66 583.6 37.6 512 131-669 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.9E-42 4.1E-47 336.4 -15.9 486 107-648 45-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 8.8E-42 1.9E-46 331.8 -18.7 489 84-624 47-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 2.5E-38 5.4E-43 321.0 5.1 394 229-648 54-452 (873)
6 KOG4194 Membrane glycoprotein 100.0 1.1E-37 2.3E-42 316.4 8.0 389 205-595 54-447 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-37 3.1E-42 332.1 -5.2 463 156-645 46-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3E-36 6.5E-41 322.1 -6.6 488 108-621 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.2E-33 2.5E-38 288.7 -3.5 369 252-652 8-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.7E-33 3.6E-38 287.6 -4.7 363 179-550 7-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1E-23 2.3E-28 252.9 27.9 358 81-453 531-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.3E-23 7.1E-28 248.7 28.1 339 124-477 551-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.9E-25 8.5E-30 215.9 -4.5 403 228-645 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 1.5E-24 3.3E-29 211.8 -4.3 412 182-621 70-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.2E-20 4.7E-25 208.0 15.9 263 301-631 203-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.6E-20 5.6E-25 207.4 16.3 260 350-653 204-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1E-19 2.2E-24 204.2 16.6 245 133-408 180-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 4.9E-20 1.1E-24 192.7 0.3 279 351-647 2-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 3.9E-18 8.4E-23 191.5 13.2 278 276-615 179-461 (754)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-19 4.5E-24 188.0 -0.2 277 327-623 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.9E-19 6.3E-24 155.2 -4.4 165 102-272 28-193 (264)
22 KOG0617 Ras suppressor protein 99.7 6.1E-19 1.3E-23 153.2 -6.3 163 128-296 30-193 (264)
23 PLN03150 hypothetical protein; 99.6 8.5E-16 1.8E-20 172.4 11.3 115 564-679 419-538 (623)
24 PLN03150 hypothetical protein; 99.6 2.8E-15 6.1E-20 168.2 14.0 148 22-189 367-525 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 7.1E-13 1.5E-17 136.6 -3.4 192 444-645 76-270 (722)
26 COG4886 Leucine-rich repeat (L 99.1 5.1E-11 1.1E-15 128.3 7.4 154 492-652 141-294 (394)
27 COG4886 Leucine-rich repeat (L 99.1 7.4E-11 1.6E-15 127.0 8.3 198 111-317 97-295 (394)
28 KOG0532 Leucine-rich repeat (L 99.1 2.4E-12 5.2E-17 132.7 -5.0 174 106-288 74-247 (722)
29 KOG1259 Nischarin, modulator o 99.1 4E-11 8.6E-16 114.2 1.8 133 514-652 283-416 (490)
30 KOG1909 Ran GTPase-activating 99.0 2.2E-11 4.7E-16 118.9 -1.0 246 366-623 25-310 (382)
31 KOG1909 Ran GTPase-activating 99.0 1.9E-11 4.2E-16 119.3 -2.1 246 342-599 25-310 (382)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 5E-15 105.2 4.2 122 514-641 18-146 (175)
33 KOG3207 Beta-tubulin folding c 99.0 4.6E-11 1E-15 119.8 -0.5 210 417-648 119-339 (505)
34 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 110.9 1.1 133 223-361 280-413 (490)
35 KOG4658 Apoptotic ATPase [Sign 99.0 7.7E-10 1.7E-14 127.1 6.6 85 127-212 567-651 (889)
36 KOG4658 Apoptotic ATPase [Sign 98.9 5.3E-10 1.1E-14 128.4 4.9 206 103-314 519-732 (889)
37 KOG3207 Beta-tubulin folding c 98.9 1.5E-10 3.3E-15 116.2 -0.2 210 104-314 118-341 (505)
38 PF14580 LRR_9: Leucine-rich r 98.9 5.3E-10 1.2E-14 102.8 2.9 107 105-216 17-126 (175)
39 KOG0531 Protein phosphatase 1, 98.8 5.4E-10 1.2E-14 120.4 -0.7 196 129-336 70-268 (414)
40 KOG0531 Protein phosphatase 1, 98.8 9.5E-10 2.1E-14 118.5 -0.3 244 104-361 69-319 (414)
41 PF08263 LRRNT_2: Leucine rich 98.8 7.8E-09 1.7E-13 71.2 4.2 42 26-79 2-43 (43)
42 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.6E-14 79.9 2.6 60 588-647 2-61 (61)
43 PF13855 LRR_8: Leucine rich r 98.7 6E-09 1.3E-13 78.6 2.3 60 564-623 2-61 (61)
44 KOG1859 Leucine-rich repeat pr 98.5 1.5E-09 3.2E-14 115.3 -8.7 126 517-648 166-292 (1096)
45 KOG1859 Leucine-rich repeat pr 98.3 1.4E-08 3E-13 108.2 -7.5 126 493-624 166-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.2 6E-08 1.3E-12 92.9 -4.8 155 444-598 186-349 (419)
47 KOG4579 Leucine-rich repeat (L 98.2 2.4E-07 5.2E-12 78.6 -1.0 82 516-599 54-135 (177)
48 KOG2982 Uncharacterized conser 98.1 5.5E-07 1.2E-11 86.4 0.5 205 418-643 70-287 (418)
49 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.5E-12 80.5 -3.6 57 588-646 78-134 (177)
50 KOG2120 SCF ubiquitin ligase, 98.1 8E-08 1.7E-12 92.1 -6.9 155 396-550 186-349 (419)
51 COG5238 RNA1 Ran GTPase-activa 98.0 1.4E-06 3E-11 82.6 0.4 137 416-552 89-255 (388)
52 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.8E-11 84.0 -0.4 86 153-238 69-157 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.0 1.6E-06 3.5E-11 82.2 0.1 166 437-602 86-287 (388)
54 PRK15386 type III secretion pr 97.7 7.7E-05 1.7E-09 77.5 6.6 134 463-621 48-187 (426)
55 PF12799 LRR_4: Leucine Rich r 97.7 3.9E-05 8.4E-10 52.8 2.9 36 588-624 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.6 4.8E-05 1E-09 52.4 3.1 36 132-168 2-37 (44)
57 PRK15386 type III secretion pr 97.6 0.00012 2.6E-09 76.1 6.9 136 487-646 48-188 (426)
58 KOG3665 ZYG-1-like serine/thre 97.6 2.8E-05 6.2E-10 87.7 1.7 134 131-266 122-265 (699)
59 KOG1644 U2-associated snRNP A' 97.4 0.00019 4.1E-09 65.7 4.7 105 539-645 42-150 (233)
60 PF13306 LRR_5: Leucine rich r 97.4 0.00053 1.1E-08 60.6 7.4 37 127-164 8-44 (129)
61 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 64.5 5.5 101 133-235 44-148 (233)
62 PF13306 LRR_5: Leucine rich r 97.3 0.0011 2.4E-08 58.6 8.5 121 199-325 8-128 (129)
63 KOG3665 ZYG-1-like serine/thre 97.3 6.7E-05 1.4E-09 84.7 0.5 133 155-289 122-264 (699)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00066 1.4E-08 65.1 2.0 9 249-257 141-149 (260)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0014 3.1E-08 62.8 2.5 38 538-575 64-103 (260)
66 KOG2123 Uncharacterized conser 96.2 0.00067 1.5E-08 65.2 -1.9 99 539-641 19-123 (388)
67 KOG4341 F-box protein containi 95.6 0.00036 7.7E-09 70.9 -6.5 133 514-646 293-437 (483)
68 PF00560 LRR_1: Leucine Rich R 95.5 0.0056 1.2E-07 34.9 0.7 19 613-632 2-20 (22)
69 KOG2123 Uncharacterized conser 95.4 0.0021 4.6E-08 61.8 -2.0 100 466-569 18-123 (388)
70 KOG4341 F-box protein containi 95.3 0.00034 7.3E-09 71.1 -7.9 83 276-358 139-227 (483)
71 KOG1947 Leucine rich repeat pr 95.3 0.0028 6.1E-08 70.2 -1.7 123 442-574 242-373 (482)
72 KOG1947 Leucine rich repeat pr 95.0 0.0029 6.3E-08 70.2 -2.7 172 418-599 187-374 (482)
73 PF00560 LRR_1: Leucine Rich R 94.6 0.01 2.2E-07 33.8 0.2 19 589-608 2-20 (22)
74 KOG4308 LRR-containing protein 93.4 0.0011 2.3E-08 71.8 -10.0 84 444-527 88-184 (478)
75 KOG4308 LRR-containing protein 92.9 0.0017 3.6E-08 70.3 -9.5 109 420-528 88-217 (478)
76 PF02439 Adeno_E3_CR2: Adenovi 91.1 0.28 6.1E-06 31.6 2.9 11 715-725 28-38 (38)
77 KOG0473 Leucine-rich repeat pr 90.3 0.02 4.3E-07 53.9 -4.1 88 534-624 37-124 (326)
78 KOG0473 Leucine-rich repeat pr 89.3 0.026 5.6E-07 53.2 -4.1 89 557-648 36-124 (326)
79 PF13504 LRR_7: Leucine rich r 89.0 0.23 5.1E-06 26.2 1.1 13 612-624 2-14 (17)
80 smart00369 LRR_TYP Leucine-ric 87.6 0.44 9.5E-06 28.3 1.8 20 610-629 1-20 (26)
81 smart00370 LRR Leucine-rich re 87.6 0.44 9.5E-06 28.3 1.8 20 610-629 1-20 (26)
82 PF01102 Glycophorin_A: Glycop 86.0 0.6 1.3E-05 39.9 2.4 27 695-721 67-93 (122)
83 PF15102 TMEM154: TMEM154 prot 86.0 0.59 1.3E-05 40.8 2.5 7 692-698 58-64 (146)
84 PF08693 SKG6: Transmembrane a 85.3 0.49 1.1E-05 31.2 1.3 8 712-719 31-38 (40)
85 PF02009 Rifin_STEVOR: Rifin/s 82.6 0.71 1.5E-05 46.4 1.8 8 712-719 276-283 (299)
86 PF13516 LRR_6: Leucine Rich r 82.4 0.5 1.1E-05 27.4 0.4 15 563-577 2-16 (24)
87 PF05393 Hum_adeno_E3A: Human 81.5 1.9 4.1E-05 33.6 3.3 18 706-723 45-62 (94)
88 smart00369 LRR_TYP Leucine-ric 81.5 1.5 3.3E-05 25.9 2.3 14 563-576 2-15 (26)
89 smart00370 LRR Leucine-rich re 81.5 1.5 3.3E-05 25.9 2.3 14 563-576 2-15 (26)
90 PF04478 Mid2: Mid2 like cell 80.1 0.64 1.4E-05 40.9 0.4 24 691-714 48-71 (154)
91 PF06365 CD34_antigen: CD34/Po 78.1 5 0.00011 37.7 5.6 29 693-721 101-129 (202)
92 PF08374 Protocadherin: Protoc 76.3 3.2 7E-05 38.8 3.8 25 691-715 37-61 (221)
93 KOG3864 Uncharacterized conser 75.4 0.47 1E-05 44.1 -1.8 35 611-645 151-186 (221)
94 KOG3864 Uncharacterized conser 73.0 0.79 1.7E-05 42.7 -1.0 33 491-523 151-184 (221)
95 PTZ00046 rifin; Provisional 72.9 2 4.3E-05 43.9 1.7 16 709-724 332-347 (358)
96 TIGR01477 RIFIN variant surfac 72.4 2.1 4.5E-05 43.6 1.7 16 709-724 327-342 (353)
97 PF08114 PMP1_2: ATPase proteo 72.1 7.8 0.00017 25.4 3.6 24 694-717 12-35 (43)
98 PTZ00382 Variant-specific surf 67.4 3.9 8.3E-05 33.6 2.0 6 692-697 66-71 (96)
99 smart00365 LRR_SD22 Leucine-ri 65.8 5.3 0.00011 23.8 1.8 15 610-624 1-15 (26)
100 PTZ00370 STEVOR; Provisional 64.6 6.6 0.00014 38.7 3.2 7 696-702 258-264 (296)
101 TIGR01478 STEVOR variant surfa 64.3 7 0.00015 38.4 3.3 7 696-702 262-268 (295)
102 PF12877 DUF3827: Domain of un 64.0 9.6 0.00021 41.9 4.6 33 686-718 264-296 (684)
103 smart00364 LRR_BAC Leucine-ric 56.8 7.7 0.00017 23.1 1.4 13 612-624 3-15 (26)
104 smart00368 LRR_RI Leucine rich 56.1 9.3 0.0002 23.1 1.7 14 611-624 2-15 (28)
105 PF08693 SKG6: Transmembrane a 55.4 7.9 0.00017 25.7 1.4 25 693-717 15-39 (40)
106 PF15102 TMEM154: TMEM154 prot 54.2 7.3 0.00016 34.3 1.4 15 691-705 54-68 (146)
107 PF14914 LRRC37AB_C: LRRC37A/B 52.2 14 0.0003 32.3 2.8 33 690-722 118-150 (154)
108 PF02009 Rifin_STEVOR: Rifin/s 52.1 7.9 0.00017 39.1 1.5 26 698-723 265-290 (299)
109 PF01299 Lamp: Lysosome-associ 49.9 7.5 0.00016 39.9 1.1 8 659-666 250-257 (306)
110 PF05454 DAG1: Dystroglycan (D 49.0 5.7 0.00012 39.8 0.0 13 707-719 161-173 (290)
111 PF13908 Shisa: Wnt and FGF in 47.2 13 0.00029 34.7 2.2 6 640-645 9-14 (179)
112 PF06679 DUF1180: Protein of u 44.9 22 0.00048 32.3 3.0 13 706-718 108-120 (163)
113 PF01102 Glycophorin_A: Glycop 44.6 23 0.00049 30.5 2.9 14 706-719 81-94 (122)
114 PF14610 DUF4448: Protein of u 44.0 13 0.00027 35.2 1.5 23 694-716 159-181 (189)
115 KOG4242 Predicted myosin-I-bin 40.5 86 0.0019 33.7 6.9 106 371-478 165-279 (553)
116 PF13260 DUF4051: Protein of u 39.2 43 0.00094 22.9 2.9 40 1-40 1-44 (54)
117 PF04689 S1FA: DNA binding pro 39.1 85 0.0019 23.1 4.6 30 687-716 8-37 (69)
118 PF12669 P12: Virus attachment 38.0 19 0.0004 26.4 1.2 6 716-721 18-23 (58)
119 TIGR00864 PCC polycystin catio 37.5 20 0.00044 46.8 2.3 30 594-623 2-31 (2740)
120 PHA03265 envelope glycoprotein 35.2 20 0.00043 36.3 1.4 13 708-720 364-376 (402)
121 TIGR01477 RIFIN variant surfac 34.8 18 0.00039 37.1 1.0 25 699-723 320-344 (353)
122 PTZ00046 rifin; Provisional 33.8 19 0.00041 37.1 0.9 23 701-723 327-349 (358)
123 smart00367 LRR_CC Leucine-rich 31.2 35 0.00076 20.0 1.5 12 611-622 2-13 (26)
124 PF06809 NPDC1: Neural prolife 29.5 49 0.0011 33.2 2.9 13 706-718 211-223 (341)
125 KOG3763 mRNA export factor TAP 26.8 39 0.00084 36.9 1.9 36 418-453 217-254 (585)
126 PF15345 TMEM51: Transmembrane 26.7 1E+02 0.0022 29.6 4.4 22 700-721 66-87 (233)
127 PF07172 GRP: Glycine rich pro 25.9 69 0.0015 26.2 2.8 9 1-9 1-9 (95)
128 KOG1219 Uncharacterized conser 25.3 2E+02 0.0044 37.6 7.4 21 634-654 3911-3931(4289)
129 PF04971 Lysis_S: Lysis protei 25.1 58 0.0012 24.5 1.9 13 691-703 32-44 (68)
130 PHA03099 epidermal growth fact 24.7 55 0.0012 28.0 2.0 16 706-721 115-130 (139)
131 PF10873 DUF2668: Protein of u 24.6 1E+02 0.0022 27.1 3.6 12 710-721 82-93 (155)
132 PF06697 DUF1191: Protein of u 24.3 51 0.0011 32.8 2.1 29 687-715 208-237 (278)
133 PF06024 DUF912: Nucleopolyhed 24.0 12 0.00027 31.0 -1.9 11 692-702 64-74 (101)
134 PF13268 DUF4059: Protein of u 23.8 1.3E+02 0.0028 22.9 3.5 6 712-717 26-31 (72)
135 PF12259 DUF3609: Protein of u 23.6 65 0.0014 33.8 2.8 24 695-718 301-324 (361)
136 PF11857 DUF3377: Domain of un 23.2 1.2E+02 0.0026 23.4 3.3 26 696-721 33-58 (74)
137 PF14991 MLANA: Protein melan- 22.8 24 0.00053 29.3 -0.4 17 699-715 31-47 (118)
138 PF12768 Rax2: Cortical protei 22.7 1.2E+02 0.0027 30.6 4.5 10 688-697 223-232 (281)
139 PF07010 Endomucin: Endomucin; 22.2 68 0.0015 30.4 2.3 20 699-718 197-216 (259)
140 PF03597 CcoS: Cytochrome oxid 21.7 1.7E+02 0.0036 20.2 3.6 13 710-722 17-29 (45)
141 KOG3763 mRNA export factor TAP 20.9 51 0.0011 36.0 1.4 65 129-193 216-284 (585)
142 TIGR00847 ccoS cytochrome oxid 20.7 1.6E+02 0.0035 20.9 3.4 13 710-722 18-30 (51)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-78 Score=725.64 Aligned_cols=584 Identities=36% Similarity=0.572 Sum_probs=456.0
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccccCCc
Q 041178 22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEF 101 (725)
Q Consensus 22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~ 101 (725)
+...++|++||++||+++. ++.+.+.+|+ .+ .+||.|.||+|+..++|+.|+++++++.|.++ .
T Consensus 24 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~---~~-----------~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~ 87 (968)
T PLN00113 24 SMLHAEELELLLSFKSSIN-DPLKYLSNWN---SS-----------ADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-S 87 (968)
T ss_pred cCCCHHHHHHHHHHHHhCC-CCcccCCCCC---CC-----------CCCCcCcceecCCCCcEEEEEecCCCccccCC-h
Confidence 4456799999999999996 3446678895 33 68999999999987899999999999999886 6
Q ss_pred ccCCCCCCcEEECCCCCCCccCchhcc-CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCC
Q 041178 102 AFSSFPHLVHLNLSFNIVFGTIPPQVG-NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL 180 (725)
Q Consensus 102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 180 (725)
.+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++|.+++.+|..++++++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence 889999999999999999988887755 899999999999999988885 46889999999999999889999999999
Q ss_pred CCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecc
Q 041178 181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260 (725)
Q Consensus 181 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 260 (725)
|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 99999999999888888888999999999999988888888888888999999998888888888888888888888888
Q ss_pred ccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340 (725)
Q Consensus 261 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 340 (725)
|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 88888888888888888888888888877777777777788888888777777777777777777777777777766666
Q ss_pred ccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCC
Q 041178 341 SSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTS 420 (725)
Q Consensus 341 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 420 (725)
..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|.++..+++|+.+++
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l------------------ 387 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL------------------ 387 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC------------------
Confidence 66666666666666666666666655555555555555555555555555544444555554
Q ss_pred CcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccC
Q 041178 421 LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISS 500 (725)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~ 500 (725)
++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+.+.+|..
T Consensus 388 ------~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------- 447 (968)
T PLN00113 388 ------FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR-------------- 447 (968)
T ss_pred ------cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh--------------
Confidence 444444445555555555555555555555444444444444444444444433333333
Q ss_pred CcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccCh
Q 041178 501 NHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP 580 (725)
Q Consensus 501 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 580 (725)
+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+.++++|++|++++|++.+.+|
T Consensus 448 ----------~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 448 ----------KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred ----------hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 3334444444444444444444433 24677888888888887788888888889999999999999999
Q ss_pred hhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCcCce
Q 041178 581 IEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDA 660 (725)
Q Consensus 581 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~ 660 (725)
..++++++|++|+|++|.+++.+|..++++++|+.|||++|++++.+|..+..+++|+++++++|++.|.+|..+++.++
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~ 596 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI 596 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred ---eccCCCCCCCCC
Q 041178 661 ---RMEGNKGLCGNI 672 (725)
Q Consensus 661 ---~~~gn~~lc~~~ 672 (725)
++.||+.+||..
T Consensus 597 ~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 597 NASAVAGNIDLCGGD 611 (968)
T ss_pred ChhhhcCCccccCCc
Confidence 789999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.8e-62 Score=583.64 Aligned_cols=512 Identities=37% Similarity=0.536 Sum_probs=404.6
Q ss_pred CCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCcccc-CCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEE
Q 041178 131 SKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIG-QLSLINELALCHNNLYGPIPPSLGNLSNLANFY 209 (725)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 209 (725)
.+++.|++++|.++|.+|..|..+++|++|+|++|.+.+.+|..+. ++++|++|++++|++++.+|. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4688999999999998888899999999999999999888887765 888999999999988887775 4567788888
Q ss_pred ccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcccc
Q 041178 210 LNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289 (725)
Q Consensus 210 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 289 (725)
+++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 88888777777777778888888888887777777777777777777777777777777777777777777777777776
Q ss_pred ccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccC
Q 041178 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY 369 (725)
Q Consensus 290 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 369 (725)
.+|..++++++|++|++++|.+++.+|..++++++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~------ 300 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI------ 300 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC------
Confidence 66666666666666666666666666655665666666655555555555555555555555555555554444
Q ss_pred CCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEe
Q 041178 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLD 449 (725)
Q Consensus 370 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 449 (725)
|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 301 ------------------p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 301 ------------------PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred ------------------ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 44444555555555555555555555555556666666666666666666666667777777
Q ss_pred CcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC
Q 041178 450 LSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529 (725)
Q Consensus 450 ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 529 (725)
+++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 77777777777777777778888888888888888888888899999999999998999999999999999999999999
Q ss_pred CCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccC
Q 041178 530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609 (725)
Q Consensus 530 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 609 (725)
.+|..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+++|+.|+|++|.+.+.+|..+.+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 999989999999999999999999888765 4589999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCC----CCcCceeccCCCCCC
Q 041178 610 MKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS----TTFKDARMEGNKGLC 669 (725)
Q Consensus 610 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~----~~~~~~~~~gn~~lc 669 (725)
+++|++|+|++|.+++.+|..|..+++|+.|++++|+++|.+|.. ..+..+.+.+|+..+
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999975 334555777887554
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-42 Score=336.41 Aligned_cols=486 Identities=31% Similarity=0.436 Sum_probs=290.2
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
..++.+.+++|.+... .+.+.++..|.+|++++|.++ ..|++++.+..++.++.++|.+. .+|+.++.+.+|+.++.
T Consensus 45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 4466667777766433 334566666677777777666 55666666666666666666665 55666666666666666
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP 266 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 266 (725)
++|.+. .+|++++.+..|+.++..+|++ + ..|+++.++.+|..+++.+|++...
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i------------------------~-slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQI------------------------S-SLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhcccccc------------------------c-cCchHHHHHHHHHHhhccccchhhC
Confidence 666555 3444555555555555555554 4 3344444444444444444444422
Q ss_pred CCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccC-cC
Q 041178 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI-GN 345 (725)
Q Consensus 267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~ 345 (725)
.|. .-+++.|++||...|.++ .+|+.++.+.+|+.|++..|++.. .| .|.+|..|++++++.|++. .+|... ..
T Consensus 176 ~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~ 250 (565)
T KOG0472|consen 176 PEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKH 250 (565)
T ss_pred CHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcc
Confidence 222 222555555555555543 455555555555555555555543 23 4555556666666665555 333332 35
Q ss_pred CCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccC------CC
Q 041178 346 LSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRN------LT 419 (725)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~------l~ 419 (725)
++++..||+.+|++. ..|+.++.+++|+.||+++|.++ .+|..++++ .|+.|.+.+|.+... -..+.+ ++
T Consensus 251 L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLK 326 (565)
T ss_pred cccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHH
Confidence 555556666665554 34555555555555555555555 345555555 555555555544311 011100 01
Q ss_pred CCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccC---CCcEE
Q 041178 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESF---KLQVL 496 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~---~L~~L 496 (725)
.|+. .+..-.++...-. .-..-+. ..............+.|++++-+++ .+|.....-. -....
T Consensus 327 yLrs-~~~~dglS~se~~------~e~~~t~-----~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~V 393 (565)
T KOG0472|consen 327 YLRS-KIKDDGLSQSEGG------TETAMTL-----PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSV 393 (565)
T ss_pred HHHH-hhccCCCCCCccc------ccccCCC-----CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEE
Confidence 1110 0000000000000 0000000 0000011122334455555555555 3454433322 36788
Q ss_pred EccCCcccccCchhhhcCCCCCe-EeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcC
Q 041178 497 DISSNHIVGEIPVQLAKLFSLNK-LILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575 (725)
Q Consensus 497 ~Ls~n~l~~~~~~~~~~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
+++.|++. ++|..+..+..+.+ +.+++|.++ .+|..+..+++|..|+|++|.+.. +|..++.+..|+.||++.|.|
T Consensus 394 nfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 394 NFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred ecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheeccccccc
Confidence 88888887 67877777766655 455555554 888899999999999999998877 889999999999999999998
Q ss_pred cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178 576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
..+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+. .||+.++++++|++|++++|+|.
T Consensus 471 -r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 471 -RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 488988888888888888889997666777999999999999999998 78999999999999999999997
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.8e-42 Score=331.75 Aligned_cols=489 Identities=29% Similarity=0.381 Sum_probs=350.6
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEcc
Q 041178 84 IISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFD 163 (725)
Q Consensus 84 v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 163 (725)
...+.++.+.+.-.. ..+..+..+.+|++++|... ..|++++++..++.++.++|+++ .+|+.++.+.+|+.++.+
T Consensus 47 l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhcc--HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 345667776654332 46788999999999999885 56889999999999999999999 899999999999999999
Q ss_pred CCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccC
Q 041178 164 VNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI 243 (725)
Q Consensus 164 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 243 (725)
+|.+. .+|++++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|++....|..+. ++.|++||...|.++ .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 99998 78889999999999999999998 7788999999999999999999776666555 999999999999887 88
Q ss_pred CccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCC-CCCCCccEEEccCCcCcccCcccccCC
Q 041178 244 PFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLSSLTVMSLFSNSLSSFIPPILGNL 322 (725)
Q Consensus 244 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l 322 (725)
|+.++.+.+|+.|++..|++. .+| .|.+|..|++++++.|++. .+|... .+++++.+||+.+|+++. .|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHh
Confidence 999999999999999999998 566 7999999999999999998 566655 489999999999999986 68888889
Q ss_pred CcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccC-----CCCCCEEECcCccccccccccccCCCCC
Q 041178 323 KSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY-----LKSIFELELCTNRLRGGIPHSIGNLTEL 397 (725)
Q Consensus 323 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L 397 (725)
++|+.||+++|.++ .+|..++++ +|+.|.+.+|.+...-.+.+.. ++.|+. .+..-.++.. .. +..
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~s--e~-~~e--- 345 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQS--EG-GTE--- 345 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCC--cc-ccc---
Confidence 99999999999998 578889999 8999999999875331111111 011111 0000000000 00 000
Q ss_pred cEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCC
Q 041178 398 VLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMN 477 (725)
Q Consensus 398 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n 477 (725)
..-+ ...+ ..+......+.+.|+++.-+++....+.|.... -.-.+..+++.|
T Consensus 346 ~~~t----~~~~-~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~----------------------~~~Vt~VnfskN 398 (565)
T KOG0472|consen 346 TAMT----LPSE-SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK----------------------SEIVTSVNFSKN 398 (565)
T ss_pred ccCC----CCCC-cccchhhhhhhhhhcccccccccCCHHHHHHhh----------------------hcceEEEecccc
Confidence 0000 0000 001112233444455554444433333332111 111344445555
Q ss_pred cccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccccccccc
Q 041178 478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK 557 (725)
Q Consensus 478 ~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 557 (725)
++. ++|..+..+..+.+.-+..|+..+.+|..+..+++|..|+|++|.+. .+|..++.+..|+.||++.|+|.. .|+
T Consensus 399 qL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~ 475 (565)
T KOG0472|consen 399 QLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPE 475 (565)
T ss_pred hHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc-chH
Confidence 544 44554444444443333333344466667777777777777777666 577777777778888888887765 677
Q ss_pred ccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178 558 SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 558 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
++..+..++.+-.++|++...-|..+.++.+|.+|||.+|.+ ..+|..+++|++|++|++++|++.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccccceeEEEecCCccC
Confidence 777777777777777777666666677888888888888888 456667888888888888888886
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-38 Score=321.00 Aligned_cols=394 Identities=24% Similarity=0.210 Sum_probs=289.4
Q ss_pred CCEEEccCCcCcccCCccccCC--CCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEc
Q 041178 229 ISTLDLSKNQLSGSIPFSLGNL--SNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306 (725)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 306 (725)
-+.||.+.+.+...--..+... +.-+.|++++|.++...+..|.++++|+++++.+|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3456777776653211111111 23467999999999888888899999999999999987 68877667777999999
Q ss_pred cCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccccc
Q 041178 307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGG 386 (725)
Q Consensus 307 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 386 (725)
.+|.|+.+-.+.++.++.|+.|||+.|.++..-...|..-.++++|+|++|.++..-...|..+.+|.+|.++.|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 99998888777888888888888888888855555666666778888888877766666666666666666666666644
Q ss_pred ccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCC
Q 041178 387 IPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466 (725)
Q Consensus 387 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 466 (725)
.+..|.++++|+.|+|..|++. -...-.|.++++|+.|.+..|++...-...|-.+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~ir------------------------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIR------------------------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred CHHHhhhcchhhhhhcccccee------------------------eehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 4445555555555555555554 3333344455555555555555554444455555
Q ss_pred CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccc
Q 041178 467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546 (725)
Q Consensus 467 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 546 (725)
.+++.|+++.|++...-..++.++++|+.|++|+|.|....+..+..+++|++|+|++|+++...++.|..+..|++|+|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 55555666666655555567777888888888888888888888888888888888888888778888888888889999
Q ss_pred cccccccccccccccCCCCCEEeCCCCcCcccChh---hhhcccccccccccccccCccCcccccCCCCCCEEeCCCCcc
Q 041178 547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPI---EVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 547 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 623 (725)
++|.+..+-...|..+++|++|||++|.++..|-+ .|.++++|+.|++.+|++....-.+|..+..||+|||.+|.+
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 99988887777888888899999999988776554 477788999999999999666667889999999999999999
Q ss_pred ccccCccccCCCCCCEEeCcCCCcc
Q 041178 624 SGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 624 ~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
..+-|..|..+ .|++|.+..-.+.
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred eeecccccccc-hhhhhhhcccceE
Confidence 88888999888 7888877554443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=316.40 Aligned_cols=389 Identities=25% Similarity=0.213 Sum_probs=289.0
Q ss_pred CcEEEccCCcCCccCccccCCC--CCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEc
Q 041178 205 LANFYLNNNLLFDSIPLVLGNL--KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDL 282 (725)
Q Consensus 205 L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 282 (725)
-+.|+.+++.+.......+..+ +.-+.||+++|.+...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3557788877644322223222 34567999999999888889999999999999999998 67876666777999999
Q ss_pred cCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccC
Q 041178 283 SENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF 362 (725)
Q Consensus 283 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 362 (725)
.+|.++..-...+..++.|+.|||+.|.|+.+....|..-.++++|+|+.|.++..-...|..+.+|..|.|+.|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 99999987788889999999999999999988777888888999999999999988778899999999999999999988
Q ss_pred CcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCC
Q 041178 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYH 442 (725)
Q Consensus 363 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 442 (725)
.+..|..++.|+.|++..|++.-.--..|..+++|+.+.+..|.+...-...|..+.+++.|+|+.|++...-..++-++
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 88888889999999999999884445567778888888888888776666677777777777777777776666666777
Q ss_pred CCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL 522 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 522 (725)
..|+.|++++|.+..+.+..|..+++|++|+++.|+++..-+..+..+..|++|.|+.|++...-...|..+++|++|||
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 77777777777777666666666666666666666666655556666666666666666665555555566666666666
Q ss_pred cCceecCCCC---ccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccc
Q 041178 523 SLNQLSGGMP---FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLS 595 (725)
Q Consensus 523 ~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 595 (725)
++|.++..+- ..|..+++|+.|++.+|++..+.-.+|.++..|++|||.+|.+..+-|.+|..+ .|++|.++
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 6666554322 234555566666666666555444555555666666666665555555555555 55555544
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=332.13 Aligned_cols=463 Identities=30% Similarity=0.355 Sum_probs=283.1
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEcc
Q 041178 156 QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLS 235 (725)
Q Consensus 156 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 235 (725)
+|+.||+++|.+. ..|..+..+.+|+.|.++.|.+. ..|.+..++.+|+++.|.+|.+ ...|..+..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL-QSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh-hcCchhHHhhhcccccccc
Confidence 3444444444433 34444444444444444444444 3344444455555555554443 3345555555555555555
Q ss_pred CCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC
Q 041178 236 KNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315 (725)
Q Consensus 236 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 315 (725)
.|.+. .+|..+..++.+..+..++|..... ++... ++.+++..|.+.+.++..+..+.. .+++.+|.+..
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-- 192 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-- 192 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh--
Confidence 55544 4455555555555555555511111 11111 555555555555555555544444 45666665541
Q ss_pred cccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCC
Q 041178 316 PPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLT 395 (725)
Q Consensus 316 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 395 (725)
..+..+.+|+.+....|++... --.-++|+.|+.++|.++...+. ....+++.+++++|+++ .+|.|++.+.
T Consensus 193 -~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~ 264 (1081)
T KOG0618|consen 193 -LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACA 264 (1081)
T ss_pred -hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcc
Confidence 2344555666666665555421 11224566666666665522211 12335666666666666 3446666666
Q ss_pred CCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCC-CcEEEC
Q 041178 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK-LGTFIV 474 (725)
Q Consensus 396 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-L~~L~l 474 (725)
+|+.++...|.++ .+|..+....+|+.+.+..|++... |.......+|++|++..|++....+..+.-... ++.+..
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 6666666666663 4555555556666666666666533 333444566666666666665333222222222 555555
Q ss_pred CCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccc
Q 041178 475 SMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW 554 (725)
Q Consensus 475 ~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 554 (725)
+.|++.......=...+.|+.|++.+|.++...-..+.++.+|+.|+|++|++.......+.+++.|++|+||+|+++.
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~- 421 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT- 421 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-
Confidence 6565553221222335678999999999998888889999999999999999985555678899999999999999987
Q ss_pred cccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCcc-CcccccCCCCCCEEeCCCCccccccCccccC
Q 041178 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE-MPFQICNMKSLEKLNLCHNNLSGFIPRCFEG 633 (725)
Q Consensus 555 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 633 (725)
+|.++..+..|++|...+|++. ..| ++..++.|+.+|+|.|.++.. +|..... ++|++||+++|.-.-.....|..
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~ 498 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKV 498 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHH
Confidence 7899999999999999999985 667 889999999999999999654 4444433 89999999999854455567777
Q ss_pred CCCCCEEeCcCC
Q 041178 634 MHNLSHIDISYN 645 (725)
Q Consensus 634 l~~L~~L~ls~N 645 (725)
+.++..+++.-|
T Consensus 499 l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 499 LKSLSQMDITLN 510 (1081)
T ss_pred hhhhhheecccC
Confidence 888888887776
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3e-36 Score=322.08 Aligned_cols=488 Identities=30% Similarity=0.324 Sum_probs=343.4
Q ss_pred CCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcC
Q 041178 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC 187 (725)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 187 (725)
.+..|++..|.+....-+.+.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3666666666554322334444555777777777776 66777777777777777777766 566777777777777777
Q ss_pred CCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccC
Q 041178 188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI 267 (725)
Q Consensus 188 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 267 (725)
.|.+. ..|..+..+++|++|+++.|.+ +.+|..+..+..++.++.++|.-... ++... .+.+++..|.+.+.+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence 77665 6677777777777777777776 56666677777777777777722211 22222 666677777777666
Q ss_pred CccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCC
Q 041178 268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347 (725)
Q Consensus 268 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 347 (725)
+..+..+.. .|+|.+|.+. -..+..+.+|+.+....|++....- .-++++.|+.+.|.++...+. ..-.
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~ 241 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPL 241 (1081)
T ss_pred hcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccc
Confidence 666666555 5777777765 1234566777777777777654321 225677777777777633221 1224
Q ss_pred CCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECc
Q 041178 348 NLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFN 427 (725)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 427 (725)
+|++++++.|++++ +|++++.+.+|+.++..+|+++ .+|..+...++|+.+....|.+.. +|+...+++.|+.|++.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence 67778888887764 4577777888888888888875 677777777788888888887763 56667778888888888
Q ss_pred CccccccccccccCCCC-CCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc
Q 041178 428 QNNLSGKVYEAFGYHPN-LTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE 506 (725)
Q Consensus 428 ~n~l~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 506 (725)
.|++....+..+..... |..+..+.|++.......-...+.|+.|++.+|.++...-..+.....|+.|+|++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 88877655544444443 66777777776644433334567788889999988877666677788899999999998866
Q ss_pred CchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcc
Q 041178 507 IPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKL 586 (725)
Q Consensus 507 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 586 (725)
....+.++..|+.|+|++|+++ .+|..+..+..|++|....|.+.. .| .+..++.|+.+|+|.|+++...-..--.-
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 6667888999999999999998 678889999999999999999886 66 78899999999999999876433322223
Q ss_pred cccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178 587 IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 587 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 621 (725)
++|++||+++|.-....-..|..++.+...++.-|
T Consensus 476 p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 78999999999853444456666777777777666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-33 Score=288.75 Aligned_cols=369 Identities=26% Similarity=0.332 Sum_probs=229.5
Q ss_pred CCCceeecccccc-ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccc
Q 041178 252 NLGILYLYSNSLS-GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGL 330 (725)
Q Consensus 252 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 330 (725)
-.+-.++++|.++ +..|.....+++++.|.|...++. .+|..++.+.+|++|.+++|++... -..++.++.|+.+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 3444556666665 345555555666666666555554 4555555555555555555554432 223444455555555
Q ss_pred ccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCC
Q 041178 331 HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP 410 (725)
Q Consensus 331 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 410 (725)
..|++.. .-+|..+..+..|+.|++++|+++ +.|..+.+-+++-+|++++|++..+
T Consensus 86 R~N~LKn-----------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 86 RDNNLKN-----------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETI 141 (1255)
T ss_pred hcccccc-----------------------CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccC
Confidence 5544421 123444444444555555555444 4444444444555555555555433
Q ss_pred CCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcc-cccCCccccc
Q 041178 411 IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI-SGSIPLEIGE 489 (725)
Q Consensus 411 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~-~~~~p~~~~~ 489 (725)
..+.|.+++.|-.|++++|++.. .|..+..+..|++|++++|.+.-.--..+..+++|++|.+++.+- ...+|.++..
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 33334445555555555555542 233334455555555555554322222233344555555555332 2356777777
Q ss_pred cCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEe
Q 041178 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLN 569 (725)
Q Consensus 490 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 569 (725)
+.+|..+|+|.|.+. ..|+.+..+++|+.|+|++|+++ .+........+|+.|+||.|+++. .|.++..+++|+.|+
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLY 297 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHH
Confidence 788888888888776 67888888888888888888887 444555667788888888888876 788888888888888
Q ss_pred CCCCcCcc-cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178 570 LSNNQFIQ-KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 570 Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
+.+|+++- -||..++.+..|+++..++|.+ ...|+.+..|..|+.|.|++|++. ..|+.+.-++.|+.||+..|+--
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 88888753 4788888888888888888888 677888888888888888888876 57888888888888888888754
Q ss_pred ccCC
Q 041178 649 GPIP 652 (725)
Q Consensus 649 g~ip 652 (725)
-.-|
T Consensus 376 VMPP 379 (1255)
T KOG0444|consen 376 VMPP 379 (1255)
T ss_pred cCCC
Confidence 3333
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-33 Score=287.62 Aligned_cols=363 Identities=28% Similarity=0.411 Sum_probs=234.6
Q ss_pred CCCCEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCcee
Q 041178 179 SLINELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILY 257 (725)
Q Consensus 179 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 257 (725)
+-.+-.|+++|.++| ..|....++++++.|.|....+ ..+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 334555666666663 5666666777777777776665 456777777777777777777766 3445566777777777
Q ss_pred ecccccc-ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccccc
Q 041178 258 LYSNSLS-GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336 (725)
Q Consensus 258 L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (725)
+..|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-+|+|++|+|..+....|.++..|-.||+++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 7777764 346777888888888888888887 67888888888888888888888766666778888888888888887
Q ss_pred ccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccc-ccccccccCCCCCcEEEcCCCcCCCCCCccc
Q 041178 337 GVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR-GGIPHSIGNLTELVLVNMCENHLSGPIPKSL 415 (725)
Q Consensus 337 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 415 (725)
.+|+.+..+..|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|.++
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 66777888888888888888765433333445566777777765432 356777777777777777777776 467777
Q ss_pred cCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc-cCCccccccCCCc
Q 041178 416 RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG-SIPLEIGESFKLQ 494 (725)
Q Consensus 416 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~~~~l~~L~ 494 (725)
.++.+|+.|++++|+++..- .......+|++|++|.|+++ .+|..+..+++|+.|...+|+++- -+|+.++.+..|+
T Consensus 242 y~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 77777777777777766322 12223345666666666665 344555555555555555554432 2344455555555
Q ss_pred EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccc
Q 041178 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANK 550 (725)
Q Consensus 495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 550 (725)
++..++|.+. ..|+.+..|..|+.|.|++|++. .+|+.+.-++.|+.||+..|+
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 5544444443 44444444444444444444444 344444444444444444443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1e-23 Score=252.94 Aligned_cols=358 Identities=22% Similarity=0.259 Sum_probs=205.7
Q ss_pred CCCEEEEEcCCCCCcc-ccCCcccCCCCCCcEEECCCCC------CCccCchhccCCC-CCCEEECCCCCCCCCCCccCc
Q 041178 81 AERIISINLSSMGLNG-TLQEFAFSSFPHLVHLNLSFNI------VFGTIPPQVGNLS-KLQHLDLGNNQLTGVIPPEIG 152 (725)
Q Consensus 81 ~~~v~~l~l~~~~l~~-~~~~~~~~~l~~L~~L~Ls~n~------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~ 152 (725)
+.+|.++.+.-..+.. .+...+|..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..|
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 3466666654433321 2334567788888888886543 2234566666654 5888888887776 566666
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEE
Q 041178 153 HLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTL 232 (725)
Q Consensus 153 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 232 (725)
...+|++|++++|.+. .+|..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..++++++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4678888888888776 5666777788888888877665555553 6777888888888777667777777778888888
Q ss_pred EccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCc
Q 041178 233 DLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLS 312 (725)
Q Consensus 233 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 312 (725)
++++|..-+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 887765444666554 6777777777777655555532 346777777777765 455544 4566776666553321
Q ss_pred c-------cCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccc
Q 041178 313 S-------FIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG 385 (725)
Q Consensus 313 ~-------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 385 (725)
. ..+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|....
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 1 111111223455555555555444555555555555555555554333444433 34455555555543332
Q ss_pred cccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCC
Q 041178 386 GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQN 453 (725)
Q Consensus 386 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n 453 (725)
.+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|+--..++.....+++|+.+++++|
T Consensus 840 ~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 840 TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 33321 234444555554444 23444444444444444443322223333334444444444443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.3e-23 Score=248.68 Aligned_cols=339 Identities=22% Similarity=0.232 Sum_probs=209.8
Q ss_pred chhccCCCCCCEEECCCCC------CCCCCCccCcCCC-CCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCC
Q 041178 124 PPQVGNLSKLQHLDLGNNQ------LTGVIPPEIGHLN-QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP 196 (725)
Q Consensus 124 ~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 196 (725)
+.+|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++++|.+. .+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 3467888999999886653 3335677776664 5889999888876 667766 4688889999888876 567
Q ss_pred CCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCC
Q 041178 197 PSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276 (725)
Q Consensus 197 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 276 (725)
..+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 7778888888888888765566664 7778888888888877666788888888888888888876666677655 6788
Q ss_pred CCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccc-------cCCccCcCCCCC
Q 041178 277 LLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNG-------VIPSSIGNLSNL 349 (725)
Q Consensus 277 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~~L 349 (725)
|++|++++|...+.+|.. .++|+.|++++|.+.. +|..+ .+++|+.|++..+.... ..+......++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 888888887655555542 3577888888887754 44433 46677777666533210 111112223455
Q ss_pred CEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCc
Q 041178 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429 (725)
Q Consensus 350 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 429 (725)
+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|++++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 566666555555555555555555555555554333444443 4555555555554433333321 234445555554
Q ss_pred cccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCC
Q 041178 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMN 477 (725)
Q Consensus 430 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n 477 (725)
.++ .+|..+..+++|++|++++|+-...+|.....+++|+.+++++|
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 444 23344444444555554443333333333444444444444443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=3.9e-25 Score=215.88 Aligned_cols=403 Identities=23% Similarity=0.258 Sum_probs=210.9
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccC-CccccccCCCCCCCCCccEEEc
Q 041178 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSE-NQLSGSIPISLGNLSSLTVMSL 306 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L 306 (725)
.-..++|..|+|+..-+..|+.+++|+.|+|++|.|+.+-|.+|.++.++..|-+.+ |+|+......|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 455667777777755556677777777777777777777777777777666655544 6666544455666777777777
Q ss_pred cCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccC------------CcccccCCCCCC
Q 041178 307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGF------------VPEEIGYLKSIF 374 (725)
Q Consensus 307 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------------~~~~l~~l~~L~ 374 (725)
.-|++.-...+.|..++++..|.+..|.+...-...|..+..++.+.+..|.+... .|..+++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 77776666666677777777777777766633333666666667666666653211 111111111122
Q ss_pred EEECcCccccccccccccCC-CCCcEEEcCCCcCCCCCC-ccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcC
Q 041178 375 ELELCTNRLRGGIPHSIGNL-TELVLVNMCENHLSGPIP-KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452 (725)
Q Consensus 375 ~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 452 (725)
...+.+.++...-+..|... ..+..--.+.+...+.-| ..|..+++|+.|++++|+++++.+.+|.+..++++|.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 22222222221111111111 111110111121222222 3455556666666666666666666666666666666666
Q ss_pred CccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc-CchhhhcCCCCCeEeccCceecCCC
Q 041178 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE-IPVQLAKLFSLNKLILSLNQLSGGM 531 (725)
Q Consensus 453 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~ 531 (725)
|++...-...|.++..|++|++.+|+|+...|.+|....+|.+|.+-.|.+.-. --.+++. .|.++.-.| .
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~-~ 379 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVG-N 379 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCC-C
Confidence 665554445555555566666666665555555555555555555555543210 0011110 011111111 1
Q ss_pred CccccCccccccccccccccccc---ccccc---------ccCCCCCEEeCCCCcCcccChhhhhccccccccccccccc
Q 041178 532 PFELGSLTELQYLDLSANKLRSW---IPKSI---------GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599 (725)
Q Consensus 532 ~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~---------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 599 (725)
|. -+....++.+.+++..+... .|++. ..++-+.+..=-.|+....+|..+. ..-.+|++.+|.+
T Consensus 380 ~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~ 456 (498)
T KOG4237|consen 380 PR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAI 456 (498)
T ss_pred CC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchh
Confidence 11 11223344444544433211 11111 1122232222112222233333222 2345788999998
Q ss_pred CccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCC
Q 041178 600 GKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYN 645 (725)
Q Consensus 600 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 645 (725)
..+|.. .+.+| .+|+++|+++..--..|.+++.|.+|-+|||
T Consensus 457 -~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 457 -TSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -cccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 456665 66788 8999999998777788899999999999887
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-24 Score=211.76 Aligned_cols=412 Identities=21% Similarity=0.197 Sum_probs=211.9
Q ss_pred CEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccC-CcCcccCCccccCCCCCCceeecc
Q 041178 182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSK-NQLSGSIPFSLGNLSNLGILYLYS 260 (725)
Q Consensus 182 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~ 260 (725)
.+++|..|.|+...|.+|+.+++|+.|||++|.++.+-|.+|..+++|..|-+.+ |+|+..-...|+.+..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4455555555555555555555555555555555555555555555554444433 555533333455555555555555
Q ss_pred ccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178 261 NSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340 (725)
Q Consensus 261 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 340 (725)
|++.-.....|..++++..|.+.+|.+...--..|..+..++.+.+..|.+-. ..+++.+.. .....|
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~~~ 217 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAMNP 217 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhhch
Confidence 55554444455555555555555555542222244455555555554444211 011111110 001112
Q ss_pred ccCcCCCCCCEEEccCCcCccCCccccc-CCCCCCEEECcCcccccccc-ccccCCCCCcEEEcCCCcCCCCCCccccCC
Q 041178 341 SSIGNLSNLRLLYLYNNGFYGFVPEEIG-YLKSIFELELCTNRLRGGIP-HSIGNLTELVLVNMCENHLSGPIPKSLRNL 418 (725)
Q Consensus 341 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 418 (725)
..++...-.....+.+.++...-+..+. ..+++..-..+.+...+.-| ..|..+++|+.+++++|++++.-+.+|.+.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 2223333333333333333322222211 11111111111222222333 346777888888888888888777888888
Q ss_pred CCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccC-CccccccCCCcEEE
Q 041178 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSI-PLEIGESFKLQVLD 497 (725)
Q Consensus 419 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~ 497 (725)
..++.|.|..|++.......|.++..|+.|++.+|+++...|..|.....|.+|.+-.|.+.-.- -.+++..
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W------- 370 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW------- 370 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH-------
Confidence 88888888888887777777788888888888888888888888888888888887766543100 0000000
Q ss_pred ccCCcccccCchhhhcCCCCCeEeccCceecC---CCCcc---------ccCcccccc-ccccccccccccccccccCCC
Q 041178 498 ISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG---GMPFE---------LGSLTELQY-LDLSANKLRSWIPKSIGNLLK 564 (725)
Q Consensus 498 Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~---------~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~ 564 (725)
+..++..|..|- ..-..++.+.+++..+.. ..|++ =..++-+.. ...|+..+. .+|..+. ..
T Consensus 371 lr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d 445 (498)
T KOG4237|consen 371 LRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VD 445 (498)
T ss_pred HhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--ch
Confidence 011111111110 001122333333322211 11111 112333332 233333333 2443322 34
Q ss_pred CCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 565 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 621 (725)
-.++++.+|.++ .+|.+ .+.+| .+|+++|+++..--..|.++++|.+|-|++|
T Consensus 446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 567888888875 56666 56777 8899999987777778889999999888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.2e-20 Score=208.00 Aligned_cols=263 Identities=25% Similarity=0.314 Sum_probs=142.9
Q ss_pred ccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178 301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380 (725)
Q Consensus 301 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 380 (725)
-..|+++++.++. +|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 4566777777664 454443 356666777666663 443 23556666666666553 2321 23555555555
Q ss_pred ccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccC
Q 041178 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS 460 (725)
Q Consensus 381 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 460 (725)
|.++ .+|.. .++|+.|++++|.++. +|. ..++|+.|++++|++++. |
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---------------------------~p~~L~~LdLS~N~L~~L-p 318 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---------------------------LPPGLQELSVSDNQLASL-P 318 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---------------------------cccccceeECCCCccccC-C
Confidence 5554 22221 1234444444444442 221 123455555555555432 2
Q ss_pred ccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccc
Q 041178 461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTE 540 (725)
Q Consensus 461 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 540 (725)
.. ...|+.|++++|.+++ +|.. ..+|++|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+
T Consensus 319 ~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 319 AL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG 383 (788)
T ss_pred CC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence 11 1234455555555542 3321 1356666666666663 3322 2356666677776663 4432 245
Q ss_pred cccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCC
Q 041178 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCH 620 (725)
Q Consensus 541 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 620 (725)
|+.|++++|++++ +|.. .++|+.|++++|++++ +|... .+|+.|++++|+++ .+|..+.++++|+.|+|++
T Consensus 384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 6777777777765 4432 2467777777777653 45432 35666777777774 5676777777777777777
Q ss_pred CccccccCccc
Q 041178 621 NNLSGFIPRCF 631 (725)
Q Consensus 621 N~l~~~~p~~l 631 (725)
|++++.+|..+
T Consensus 455 N~Ls~~~~~~L 465 (788)
T PRK15387 455 NPLSERTLQAL 465 (788)
T ss_pred CCCCchHHHHH
Confidence 77777666655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.6e-20 Score=207.42 Aligned_cols=260 Identities=23% Similarity=0.271 Sum_probs=186.3
Q ss_pred CEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCc
Q 041178 350 RLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQN 429 (725)
Q Consensus 350 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 429 (725)
..|+++++.++ .+|..+. ++|+.|++.+|+++. +|.. .++|++|++++|+++. +|.. .++|+.|++.+|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence 34444444444 2333332 245555555555542 3321 3566667777766663 3432 356777777777
Q ss_pred cccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCch
Q 041178 430 NLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV 509 (725)
Q Consensus 430 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 509 (725)
.++.. |. ..++|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|.
T Consensus 273 ~L~~L-p~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 273 PLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred chhhh-hh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence 77643 22 23578899999999874 343 35789999999999986 4442 2468899999999975 453
Q ss_pred hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccc
Q 041178 510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589 (725)
Q Consensus 510 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 589 (725)
. ..+|+.|+|++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|++++ +|.. .++|
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L 404 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSEL 404 (788)
T ss_pred c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCC
Confidence 2 2479999999999994 5543 3678899999999987 6653 3579999999999974 5543 3679
Q ss_pred ccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 405 ~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 405 KELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 999999999965 6753 357889999999998 7899999999999999999999988765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1e-19 Score=204.22 Aligned_cols=245 Identities=27% Similarity=0.414 Sum_probs=115.5
Q ss_pred CCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccC
Q 041178 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNN 212 (725)
Q Consensus 133 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 212 (725)
...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 444555555544 3343332 34555555555554 3333332 34555555555544 2333322 2455555555
Q ss_pred CcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccC
Q 041178 213 NLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIP 292 (725)
Q Consensus 213 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 292 (725)
|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 5543 3343332 34555555555554 3343332 345555555555542 332221 245555555555542 33
Q ss_pred CCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCC
Q 041178 293 ISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS 372 (725)
Q Consensus 293 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 372 (725)
..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ..
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~s 389 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AA 389 (754)
T ss_pred cccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HH
Confidence 3222 455555555555554 333332 45555666665555 3443332 456666666666553 333322 24
Q ss_pred CCEEECcCcccccccccc----ccCCCCCcEEEcCCCcCC
Q 041178 373 IFELELCTNRLRGGIPHS----IGNLTELVLVNMCENHLS 408 (725)
Q Consensus 373 L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~ 408 (725)
|+.|++++|++. .+|.. ...++.+..+++.+|.++
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 556666666665 33332 223355666666666665
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4.9e-20 Score=192.73 Aligned_cols=279 Identities=20% Similarity=0.207 Sum_probs=155.5
Q ss_pred EEEccCCcCcc-CCcccccCCCCCCEEECcCcccccc----ccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEE
Q 041178 351 LLYLYNNGFYG-FVPEEIGYLKSIFELELCTNRLRGG----IPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR 425 (725)
Q Consensus 351 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 425 (725)
.|+|..+.+++ ..+..+..+..|+.++++++.++.. ++..+...++++.++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 35566666652 2334444555667777776665432 33344445556666665555432 00000
Q ss_pred CcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCC---CcEEECCCCcccc----cCCcccccc-CCCcEEE
Q 041178 426 FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK---LGTFIVSMNNISG----SIPLEIGES-FKLQVLD 497 (725)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~---L~~L~l~~n~~~~----~~p~~~~~l-~~L~~L~ 497 (725)
..++..+..+++|++|++++|.+.+..+..+..+.. |+.|++++|++++ .+...+..+ ++|+.|+
T Consensus 71 -------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 71 -------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred -------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 112223334455555555555554333333322222 5555555555542 122233444 6677777
Q ss_pred ccCCccccc----CchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccccccc----cccccccCCCC
Q 041178 498 ISSNHIVGE----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSW----IPKSIGNLLKL 565 (725)
Q Consensus 498 Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L 565 (725)
+++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+..+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 777776632 233455666777777777777642 223344456777777777776543 23345567778
Q ss_pred CEEeCCCCcCcccChhhhhc-----ccccccccccccccCc----cCcccccCCCCCCEEeCCCCccccc----cCcccc
Q 041178 566 RYLNLSNNQFIQKIPIEVEK-----LIHLSKLDLSYNFLGK----EMPFQICNMKSLEKLNLCHNNLSGF----IPRCFE 632 (725)
Q Consensus 566 ~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~ 632 (725)
++|++++|++++.....+.. .+.|+.|++++|.++. .+...+..+++|+++++++|.++.. ....+.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 88888888776543333322 2678888888887752 2344556667888888888888744 344444
Q ss_pred CC-CCCCEEeCcCCCc
Q 041178 633 GM-HNLSHIDISYNEL 647 (725)
Q Consensus 633 ~l-~~L~~L~ls~N~l 647 (725)
.. +.|+++++.+|++
T Consensus 304 ~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 304 EPGNELESLWVKDDSF 319 (319)
T ss_pred hcCCchhhcccCCCCC
Confidence 44 5678888877764
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.9e-18 Score=191.53 Aligned_cols=278 Identities=24% Similarity=0.379 Sum_probs=166.7
Q ss_pred CCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEcc
Q 041178 276 SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLY 355 (725)
Q Consensus 276 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 355 (725)
+...|+++++.++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4678999998887 4676553 578999999998886 454443 47888888888877 4555443 367777777
Q ss_pred CCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccc
Q 041178 356 NNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV 435 (725)
Q Consensus 356 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 435 (725)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.+++ +|..+.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp------------------- 303 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP------------------- 303 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch-------------------
Confidence 77776 3454432 35666666666666 3454432 355666666655553 222211
Q ss_pred cccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCC
Q 041178 436 YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLF 515 (725)
Q Consensus 436 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 515 (725)
++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+. +
T Consensus 304 -------~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~ 367 (754)
T PRK15370 304 -------SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--P 367 (754)
T ss_pred -------hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--C
Confidence 234455555555543 22211 2455556666665553 444332 56777777777776 3454442 5
Q ss_pred CCCeEeccCceecCCCCccccCcccccccccccccccccccccc----ccCCCCCEEeCCCCcCcccChhhhhccccccc
Q 041178 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSI----GNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK 591 (725)
Q Consensus 516 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 591 (725)
+|+.|++++|+++ .+|..+. .+|+.|++++|++.. +|..+ ..++.+..|++.+|+++. ..+..|+.
T Consensus 368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~ 437 (754)
T PRK15370 368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQR 437 (754)
T ss_pred CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHH
Confidence 7888888888887 4555543 468888888888875 44433 345778888888888762 34445555
Q ss_pred ccccccccCc-cCcccccCCCCCCE
Q 041178 592 LDLSYNFLGK-EMPFQICNMKSLEK 615 (725)
Q Consensus 592 L~Ls~N~l~~-~~p~~~~~l~~L~~ 615 (725)
| ++.+.+.| .++...+.+..++.
T Consensus 438 L-l~s~~~~gp~i~~~~~~~~~l~~ 461 (754)
T PRK15370 438 L-MSSVGYQGPRVLFAMGDFSIVRV 461 (754)
T ss_pred h-hhcccccCCcccccccccccccc
Confidence 5 33343333 34444444444443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.1e-19 Score=187.96 Aligned_cols=277 Identities=22% Similarity=0.232 Sum_probs=167.1
Q ss_pred cccccccccc-ccCCccCcCCCCCCEEEccCCcCccC----CcccccCCCCCCEEECcCccccc------cccccccCCC
Q 041178 327 ALGLHINQLN-GVIPSSIGNLSNLRLLYLYNNGFYGF----VPEEIGYLKSIFELELCTNRLRG------GIPHSIGNLT 395 (725)
Q Consensus 327 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l~ 395 (725)
.|+|..+.+. +.....+..+..|+.++++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 34445566778899999999998543 45556677889999999987762 2334555667
Q ss_pred CCcEEEcCCCcCCCCCCccccCCCC---CcEEECcCcccccc----ccccccCC-CCCCEEeCcCCccccccCccccCCC
Q 041178 396 ELVLVNMCENHLSGPIPKSLRNLTS---LERVRFNQNNLSGK----VYEAFGYH-PNLTFLDLSQNNFYGEISFNWRNFP 467 (725)
Q Consensus 396 ~L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~~ 467 (725)
+|+.|++++|.+.+..+..+..+.. |+.|++++|++++. +...+..+ ++|+.|++++|.+++....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------ 155 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------ 155 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence 7777777777776554444443333 66666666655421 12223333 4555555555554421110
Q ss_pred CCcEEECCCCcccccCCccccccCCCcEEEccCCccccc----CchhhhcCCCCCeEeccCceecCC----CCccccCcc
Q 041178 468 KLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLT 539 (725)
Q Consensus 468 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~ 539 (725)
.++..+..+.+|++|++++|.+.+. ++..+..+++|+.|++++|.+++. ++..+..++
T Consensus 156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 1222334445566666666665532 223344455677777777766533 233445667
Q ss_pred ccccccccccccccccccccc-----cCCCCCEEeCCCCcCcc----cChhhhhcccccccccccccccCcc----Cccc
Q 041178 540 ELQYLDLSANKLRSWIPKSIG-----NLLKLRYLNLSNNQFIQ----KIPIEVEKLIHLSKLDLSYNFLGKE----MPFQ 606 (725)
Q Consensus 540 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 606 (725)
+|++|++++|.+.+.....+. ..+.|++|++++|.++. .+...+..+++|+++++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 777777777777653222222 23678888888888762 2344556667888888888888754 3334
Q ss_pred ccCC-CCCCEEeCCCCcc
Q 041178 607 ICNM-KSLEKLNLCHNNL 623 (725)
Q Consensus 607 ~~~l-~~L~~L~Ls~N~l 623 (725)
+... +.|++|++.+|.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 6788888888754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.9e-19 Score=155.16 Aligned_cols=165 Identities=30% Similarity=0.541 Sum_probs=119.8
Q ss_pred ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI 181 (725)
Q Consensus 102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 181 (725)
.+..+.+++.|.||+|.++ .+|+.+..+.+|++|++++|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4566677888888888875 45667888888888888888888 67888888888888888888877 778888888888
Q ss_pred CEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecc
Q 041178 182 NELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS 260 (725)
Q Consensus 182 ~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 260 (725)
+.||+.+|++.. .+|..|..++.|+.|++++|.+ ..+|..++++++|+.|.+..|.+- .+|..++.++.|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 888888887764 4666677777777777777766 456666677777777777666665 5566666666666666666
Q ss_pred ccccccCCcccc
Q 041178 261 NSLSGPIPSVIG 272 (725)
Q Consensus 261 n~l~~~~p~~l~ 272 (725)
|.++ .+|+.++
T Consensus 183 nrl~-vlppel~ 193 (264)
T KOG0617|consen 183 NRLT-VLPPELA 193 (264)
T ss_pred ceee-ecChhhh
Confidence 6665 3444343
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=6.1e-19 Score=153.16 Aligned_cols=163 Identities=33% Similarity=0.518 Sum_probs=120.9
Q ss_pred cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207 (725)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 207 (725)
-++.+...|.||+|.++ .+|+.+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 35666778888888888 67778888888888888888887 67778888888888888877776 66777888888888
Q ss_pred EEccCCcCC-ccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCc
Q 041178 208 FYLNNNLLF-DSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286 (725)
Q Consensus 208 L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 286 (725)
||+.+|.+. ..+|..|..+..|+.|+++.|.+. .+|.+++++++|+.|.+.+|.+- .+|..++.++.|++|++.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 888777765 356666767777777777777776 66777777777777777777665 466667777777777777777
Q ss_pred cccccCCCCC
Q 041178 287 LSGSIPISLG 296 (725)
Q Consensus 287 l~~~~p~~l~ 296 (725)
++ .+|+.++
T Consensus 185 l~-vlppel~ 193 (264)
T KOG0617|consen 185 LT-VLPPELA 193 (264)
T ss_pred ee-ecChhhh
Confidence 66 4554444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=8.5e-16 Score=172.39 Aligned_cols=115 Identities=30% Similarity=0.475 Sum_probs=92.5
Q ss_pred CCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCc
Q 041178 564 KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDIS 643 (725)
Q Consensus 564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 643 (725)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCccccCCCC-----CCcCceeccCCCCCCCCCCCCCCCC
Q 041178 644 YNELQGPIPNS-----TTFKDARMEGNKGLCGNIKGLPSCK 679 (725)
Q Consensus 644 ~N~l~g~ip~~-----~~~~~~~~~gn~~lc~~~~~~~~c~ 679 (725)
+|+++|.+|.. .....+.+.+|+++|+.+. .+.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~-l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC-CCCCc
Confidence 88888888864 1223458899999999764 46665
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=2.8e-15 Score=168.20 Aligned_cols=148 Identities=32% Similarity=0.541 Sum_probs=89.6
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCC-----ccCcceeCC---C--CCEEEEEcCC
Q 041178 22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPC-----AWVGISCNQ---A--ERIISINLSS 91 (725)
Q Consensus 22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C-----~w~gv~C~~---~--~~v~~l~l~~ 91 (725)
+...++|.+||+++|+++..+. ..+|. + ++| .|.||.|.. . .+|+.|+|++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~---~~~W~----g------------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~ 427 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL---RFGWN----G------------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN 427 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc---cCCCC----C------------CCCCCcccccccceeeccCCCCceEEEEEECCC
Confidence 4456789999999999986432 24785 2 333 799999952 1 1366666666
Q ss_pred CCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCC
Q 041178 92 MGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPI 171 (725)
Q Consensus 92 ~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 171 (725)
+.+.|.++ ..++.+++|++|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|+.++++++|++|+|++|.++|.+
T Consensus 428 n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i 506 (623)
T PLN03150 428 QGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506 (623)
T ss_pred CCccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence 66666555 35555666666666666665556655566666666666666666555555555555555555555555555
Q ss_pred CccccCC-CCCCEEEcCCC
Q 041178 172 PQEIGQL-SLINELALCHN 189 (725)
Q Consensus 172 p~~~~~l-~~L~~L~L~~n 189 (725)
|..++.. .++..+++.+|
T Consensus 507 P~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 507 PAALGGRLLHRASFNFTDN 525 (623)
T ss_pred ChHHhhccccCceEEecCC
Confidence 5554432 23344444444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=7.1e-13 Score=136.57 Aligned_cols=192 Identities=34% Similarity=0.475 Sum_probs=113.0
Q ss_pred CCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEecc
Q 041178 444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILS 523 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~ 523 (725)
.-...|++.|++. .+|..+..|-.|+.+.+..|.+. .+|..++.+..|+++||+.|+++ ..|..+..++ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3445677777765 45666666666666666666655 56666666666666666666665 4444444444 6666666
Q ss_pred CceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccC
Q 041178 524 LNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM 603 (725)
Q Consensus 524 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 603 (725)
+|+++ .+|..++....|..||.+.|.+.. +|..++++.+|+.|.+..|++. ..|.++..| .|..||+|+|++ ..|
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki-s~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI-SYL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce-eec
Confidence 66666 556566666666666666666655 4555666666666666666653 444455533 355566666666 445
Q ss_pred cccccCCCCCCEEeCCCCccccccCccc---cCCCCCCEEeCcCC
Q 041178 604 PFQICNMKSLEKLNLCHNNLSGFIPRCF---EGMHNLSHIDISYN 645 (725)
Q Consensus 604 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N 645 (725)
|-.|.+|+.|++|-|.+|.+. +.|..+ +..+-.++|+..-+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 666666666666666666665 333332 12233445555555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=5.1e-11 Score=128.26 Aligned_cols=154 Identities=40% Similarity=0.578 Sum_probs=81.9
Q ss_pred CCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCC
Q 041178 492 KLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLS 571 (725)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 571 (725)
+|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|......+.|+.|++++|++.. +|.....+..|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cchhhhhhhhhhhhhhc
Confidence 4555555555554 22334455555555555555555 333333345556666666666554 34333444446666666
Q ss_pred CCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccC
Q 041178 572 NNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 572 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 651 (725)
+|++. .++..+..+..+..+.+.+|++. .++..++.+++++.|++++|.++. ++. +..+.+++.|++++|.+....
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccc
Confidence 66422 34445555556666666666652 224455566666666666666652 222 555666666666666655443
Q ss_pred C
Q 041178 652 P 652 (725)
Q Consensus 652 p 652 (725)
|
T Consensus 294 ~ 294 (394)
T COG4886 294 P 294 (394)
T ss_pred h
Confidence 3
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=7.4e-11 Score=126.99 Aligned_cols=198 Identities=39% Similarity=0.572 Sum_probs=110.2
Q ss_pred EEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCC-CCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 111 HLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLN-QLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 111 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
.++++.+.+...+. .+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555433222 2444466666666666666 4555555553 6666666666665 44445666666666666666
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCc
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPS 269 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 269 (725)
++. .+|...+..++|+.|++++|.+. .+|..+.....|+++.+++|.+. ..+..+.++.++..+.+.+|.+.. .+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 666 33444445666666666666653 34443344444666666666432 334445555666666655555542 244
Q ss_pred cccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcc
Q 041178 270 VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPP 317 (725)
Q Consensus 270 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 317 (725)
.++.++++++|++++|.++. ++. ++.+.+++.|++++|.+....+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 45555566666666666652 222 55556666666666665554443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=2.4e-12 Score=132.74 Aligned_cols=174 Identities=29% Similarity=0.414 Sum_probs=89.9
Q ss_pred CCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 041178 106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA 185 (725)
Q Consensus 106 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 185 (725)
+..-...|++.|.+. .+|..+..+..|+.+.|.+|.+. .+|..+.++..|.+|||+.|++. ..|..+..|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344445556666553 45555555666666666666665 55556666666666666666555 4444444433 45555
Q ss_pred cCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178 186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265 (725)
Q Consensus 186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (725)
+++|+++ .+|+.++....|..|+.+.|.+ ..+|..++++.+|+.|.+..|++. .+|+.+.. -.|..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 5555554 4445555555555555555554 233444455555555555555544 33444442 23444555555554
Q ss_pred cCCccccCCCCCCEEEccCCccc
Q 041178 266 PIPSVIGNLESLLQLDLSENQLS 288 (725)
Q Consensus 266 ~~p~~l~~l~~L~~L~L~~n~l~ 288 (725)
.+|-.|.+|..|++|.|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 34444555555555555555544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4e-11 Score=114.17 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=98.0
Q ss_pred CCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccc
Q 041178 514 LFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLD 593 (725)
Q Consensus 514 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 593 (725)
...|+++||++|.++ .+.+++.-.+.++.|++|+|.+... +.+..+++|+.||||+|.++. +-.+-..+-++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 345777888888877 5666677778888888888888763 347778888888888888753 333334566778888
Q ss_pred ccccccCccCcccccCCCCCCEEeCCCCcccccc-CccccCCCCCCEEeCcCCCccccCC
Q 041178 594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI-PRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 594 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
|++|.+.. -+.++.+-+|..||+++|++.... -..+++++.|+.+.+.+||+.+.+.
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 88888833 235677888889999999886432 3567888899999999999886543
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=2.2e-11 Score=118.94 Aligned_cols=246 Identities=23% Similarity=0.269 Sum_probs=121.3
Q ss_pred cccCCCCCCEEECcCcccccc----ccccccCCCCCcEEEcCCCcCCC----CCCcc-------ccCCCCCcEEECcCcc
Q 041178 366 EIGYLKSIFELELCTNRLRGG----IPHSIGNLTELVLVNMCENHLSG----PIPKS-------LRNLTSLERVRFNQNN 430 (725)
Q Consensus 366 ~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~p~~-------l~~l~~L~~L~l~~n~ 430 (725)
.+..+.+++.+++++|.+... +...+.+.++|+..++++- ++| .+|.. +..+++|+.++|+.|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344566777888888876533 2233445566666666542 222 23322 2334455555555554
Q ss_pred cccccccc----ccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc
Q 041178 431 LSGKVYEA----FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE 506 (725)
Q Consensus 431 l~~~~~~~----~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 506 (725)
+....+.. +..+..|++|.+.+|.+...-...++. .|..|. .......-+.|+++...+|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 44333322 223444444444444432110000000 000000 011123345566666666665322
Q ss_pred ----CchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccccccc----cccccccCCCCCEEeCCCCc
Q 041178 507 ----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQ 574 (725)
Q Consensus 507 ----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~ 574 (725)
+...|..++.|+.+.++.|.+... +...+..+++|++|||.+|.++.. +...+..+++|++|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 223455566666666666665421 223456667777777777766432 23445566667777777776
Q ss_pred CcccChhhh-----hcccccccccccccccCcc----CcccccCCCCCCEEeCCCCcc
Q 041178 575 FIQKIPIEV-----EKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 575 l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 623 (725)
+...-..++ ...++|++|.+.+|.++.. +-..+...+.|+.|+|++|++
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 654433332 1245666666666666433 222334456666666666666
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.9e-11 Score=119.29 Aligned_cols=246 Identities=22% Similarity=0.228 Sum_probs=162.7
Q ss_pred cCcCCCCCCEEEccCCcCccC----CcccccCCCCCCEEECcCccccc----cccc-------cccCCCCCcEEEcCCCc
Q 041178 342 SIGNLSNLRLLYLYNNGFYGF----VPEEIGYLKSIFELELCTNRLRG----GIPH-------SIGNLTELVLVNMCENH 406 (725)
Q Consensus 342 ~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~-------~~~~l~~L~~L~l~~n~ 406 (725)
.+..+..++.+++++|.+... +...+...+.|+..++++- ++| .+|. .+..+++|++++||.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 456778999999999988543 3345566778888887753 333 3443 34557799999999999
Q ss_pred CCCCCCcc----ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCccccc
Q 041178 407 LSGPIPKS----LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGS 482 (725)
Q Consensus 407 l~~~~p~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 482 (725)
+.-.-++. +..+..|++|.+.+|.+...--..++. .|..+. .++. ...-+.|+++..++|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk-------~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK-------AASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc-------cCCCcceEEEEeeccccccc
Confidence 87554443 456899999999999886332222111 111111 1111 12334556666665555421
Q ss_pred ----CCccccccCCCcEEEccCCcccc----cCchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccc
Q 041178 483 ----IPLEIGESFKLQVLDISSNHIVG----EIPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANK 550 (725)
Q Consensus 483 ----~p~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~ 550 (725)
+...+...+.|+.+.++.|.+.. .+...+..|++|+.|||.+|-|+.. +...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 22345556777888888777642 2334677888899999999888743 34456778899999999998
Q ss_pred ccccccccc-----ccCCCCCEEeCCCCcCccc----Chhhhhccccccccccccccc
Q 041178 551 LRSWIPKSI-----GNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFL 599 (725)
Q Consensus 551 l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l 599 (725)
+...-...| ...++|+.|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 865433332 2357899999999988643 334456678999999999999
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.3e-10 Score=105.20 Aligned_cols=122 Identities=28% Similarity=0.328 Sum_probs=37.1
Q ss_pred CCCCCeEeccCceecCCCCcccc-CccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhh-hccccccc
Q 041178 514 LFSLNKLILSLNQLSGGMPFELG-SLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV-EKLIHLSK 591 (725)
Q Consensus 514 ~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~ 591 (725)
+..+++|+|.+|.|+. + +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++.. ...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 3345666666666652 2 1233 355666666666666653 2455666677777777766543 2233 34666666
Q ss_pred ccccccccCccC-cccccCCCCCCEEeCCCCccccccCc----cccCCCCCCEEe
Q 041178 592 LDLSYNFLGKEM-PFQICNMKSLEKLNLCHNNLSGFIPR----CFEGMHNLSHID 641 (725)
Q Consensus 592 L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~ 641 (725)
|++++|++...- -..+..+++|++|++.+|+++.. +. .+..+++|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 666666664321 13455666777777777766532 21 234566666666
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.6e-11 Score=119.80 Aligned_cols=210 Identities=28% Similarity=0.279 Sum_probs=104.5
Q ss_pred CCCCCcEEECcCcccccccc-ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcE
Q 041178 417 NLTSLERVRFNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV 495 (725)
Q Consensus 417 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 495 (725)
++++|+.+.+.++....... .....+++++.||++.|-+....+. -.....+++|+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v----------------------~~i~eqLp~Le~ 176 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPV----------------------LKIAEQLPSLEN 176 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHH----------------------HHHHHhcccchh
Confidence 45556666666655432211 2334455666666666554432211 111233444444
Q ss_pred EEccCCcccccCchh-hhcCCCCCeEeccCceecCC-CCccccCccccccccccccccccccccccccCCCCCEEeCCCC
Q 041178 496 LDISSNHIVGEIPVQ-LAKLFSLNKLILSLNQLSGG-MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNN 573 (725)
Q Consensus 496 L~Ls~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 573 (725)
|+++.|++....... -..++.|+.|.|+.|.++-. +......+|+|+.|+|..|............+..|++|||++|
T Consensus 177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 555544443221111 11344566666666665521 1222345566666666666432222233344556666777666
Q ss_pred cCcccC-hhhhhcccccccccccccccCcc-Cccc-----ccCCCCCCEEeCCCCccccc-cCccccCCCCCCEEeCcCC
Q 041178 574 QFIQKI-PIEVEKLIHLSKLDLSYNFLGKE-MPFQ-----ICNMKSLEKLNLCHNNLSGF-IPRCFEGMHNLSHIDISYN 645 (725)
Q Consensus 574 ~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N 645 (725)
++...- -...+.++.|..|+++.+.+... +|+. ...+++|++|++++|++..- .-..+..+.+|+.|.+-.|
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 654221 12345666677777777666433 2322 34567777777777777421 1122344556666666666
Q ss_pred Ccc
Q 041178 646 ELQ 648 (725)
Q Consensus 646 ~l~ 648 (725)
+++
T Consensus 337 ~ln 339 (505)
T KOG3207|consen 337 YLN 339 (505)
T ss_pred ccc
Confidence 664
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.2e-10 Score=110.92 Aligned_cols=133 Identities=29% Similarity=0.309 Sum_probs=73.0
Q ss_pred cCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCcc
Q 041178 223 LGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLT 302 (725)
Q Consensus 223 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 302 (725)
+...+.|+++|+|+|.++ .+.++..-.+.++.|++++|.+... ..+..+++|+.||+++|.++ .+-.+-..+.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 334456666666666666 4455555566666666666666533 22556666666666666665 2333334455666
Q ss_pred EEEccCCcCcccCcccccCCCccccccccccccccc-CCccCcCCCCCCEEEccCCcCcc
Q 041178 303 VMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-IPSSIGNLSNLRLLYLYNNGFYG 361 (725)
Q Consensus 303 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 361 (725)
.|.+++|.+... ..+..+-+|..||+++|++... --..++++|-|+.+.+.+|.+.+
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666655432 2344455556666666655421 11235555555555555555543
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=7.7e-10 Score=127.09 Aligned_cols=85 Identities=28% Similarity=0.358 Sum_probs=40.1
Q ss_pred ccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCc
Q 041178 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLA 206 (725)
Q Consensus 127 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 206 (725)
|..++.|++|||++|.--+.+|..++++-+||+|+++++.+. .+|..++++..|.+|++.++.....+|.....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 444555555555544433445555555555555555555444 4444555555555555544433333333333444444
Q ss_pred EEEccC
Q 041178 207 NFYLNN 212 (725)
Q Consensus 207 ~L~L~~ 212 (725)
+|.+..
T Consensus 646 ~L~l~~ 651 (889)
T KOG4658|consen 646 VLRLPR 651 (889)
T ss_pred EEEeec
Confidence 444443
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=5.3e-10 Score=128.43 Aligned_cols=206 Identities=25% Similarity=0.308 Sum_probs=133.4
Q ss_pred cCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCC--CCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCC
Q 041178 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQ--LTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSL 180 (725)
Q Consensus 103 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 180 (725)
..+....+...+-+|.+.- ++.. ..++.|++|-+..|. +....++.|..++.|++|||++|.--+.+|..++.+-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 4445667777777766532 2222 244578888888886 44333445778999999999988766789999999999
Q ss_pred CCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcC--cccCCccccCCCCCCceee
Q 041178 181 INELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQL--SGSIPFSLGNLSNLGILYL 258 (725)
Q Consensus 181 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--~~~~~~~l~~l~~L~~L~L 258 (725)
|++|++++..+. .+|..+.++..|.+|++..+.-...+|.....+++|++|.+..... +...-..+.++.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999998888 7888899999999999998876566677677789999998876542 2222334455555555555
Q ss_pred ccccccccCCccccCCCCCC----EEEccCCccccccCCCCCCCCCccEEEccCCcCccc
Q 041178 259 YSNSLSGPIPSVIGNLESLL----QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF 314 (725)
Q Consensus 259 ~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 314 (725)
..... .+-..+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+...
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchh
Confidence 33322 1111122222222 2222222222 3445566777888888877777654
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.5e-10 Score=116.18 Aligned_cols=210 Identities=24% Similarity=0.247 Sum_probs=111.4
Q ss_pred CCCCCCcEEECCCCCCCccCc-hhccCCCCCCEEECCCCCCCCCCC--ccCcCCCCCCEEEccCCcCCCCCCccc-cCCC
Q 041178 104 SSFPHLVHLNLSFNIVFGTIP-PQVGNLSKLQHLDLGNNQLTGVIP--PEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLS 179 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~ 179 (725)
.++..|+.+.|.+..+..... .....|++++.||||.|-+..-.| .-...+++|+.|+++.|.+........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345566666665554422111 234456666666666665553222 122456666666666666543222111 2456
Q ss_pred CCCEEEcCCCcCCCC-CCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCccc-CCccccCCCCCCcee
Q 041178 180 LINELALCHNNLYGP-IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGS-IPFSLGNLSNLGILY 257 (725)
Q Consensus 180 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ 257 (725)
+|+.|.++.|.++-. +-..+..+|+|+.|+|..|.....-.....-+..|+.|||++|++-.. .-...+.++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 666666666666521 111123556666677766642222222233455667777776665421 112345666677777
Q ss_pred ecccccccc-CCcc-----ccCCCCCCEEEccCCccccccC--CCCCCCCCccEEEccCCcCccc
Q 041178 258 LYSNSLSGP-IPSV-----IGNLESLLQLDLSENQLSGSIP--ISLGNLSSLTVMSLFSNSLSSF 314 (725)
Q Consensus 258 L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~ 314 (725)
++.+.+... .|+. ...+++|++|++..|++.. .+ ..+..+++|+.|.+..|.+...
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 776666533 2222 2456678888888887741 22 2344566777777777777654
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=5.3e-10 Score=102.79 Aligned_cols=107 Identities=29% Similarity=0.366 Sum_probs=27.3
Q ss_pred CCCCCcEEECCCCCCCccCchhcc-CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccc-cCCCCCC
Q 041178 105 SFPHLVHLNLSFNIVFGTIPPQVG-NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI-GQLSLIN 182 (725)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~ 182 (725)
+...+++|+|.+|.++.. +.++ .+.+|++|++++|.++.. + .+..+++|++|++++|.++. +++.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 344566666666666432 2333 456666666666666632 2 35556666666666666663 33233 2456666
Q ss_pred EEEcCCCcCCCCC-CCCcCCCCCCcEEEccCCcCC
Q 041178 183 ELALCHNNLYGPI-PPSLGNLSNLANFYLNNNLLF 216 (725)
Q Consensus 183 ~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~ 216 (725)
+|++++|++...- -..+..+++|++|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666654311 122344555555555555543
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=5.4e-10 Score=120.40 Aligned_cols=196 Identities=30% Similarity=0.331 Sum_probs=97.8
Q ss_pred CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF 208 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 208 (725)
.+..++.+++..|.+.. +-..+..+++|..|++..|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34455555555555552 223345556666666666665532 22245566666666666666543 234455556666
Q ss_pred EccCCcCCccCccccCCCCCCCEEEccCCcCcccCC-ccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcc
Q 041178 209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIP-FSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287 (725)
Q Consensus 209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 287 (725)
++++|.+... ..+..++.|+.+++++|.++..-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 6666665432 224445666666666666653322 1 35556666666666655422 2233333344445555555
Q ss_pred ccccCCCCCCCCC--ccEEEccCCcCcccCcccccCCCccccccccccccc
Q 041178 288 SGSIPISLGNLSS--LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336 (725)
Q Consensus 288 ~~~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (725)
+..-+ +..+.. |+.+++++|.+... +..+..+.++..+++..|++.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence 42211 111222 55555555555432 123444455555555555544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=9.5e-10 Score=118.49 Aligned_cols=244 Identities=30% Similarity=0.312 Sum_probs=166.8
Q ss_pred CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178 104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..+..++.+++..|.+.. +-..+..+++|++|++..|.+... ...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence 356677777777776654 233477888999999999998844 333778899999999999988543 4667777999
Q ss_pred EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCc-cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccc
Q 041178 184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS 262 (725)
Q Consensus 184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (725)
|++++|.+... ..+..+++|+.+++++|.+...-+ . ...+.+++.+++..|.+... ..+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 99999988743 456668899999999998866544 2 57788899999999987632 344555566666888888
Q ss_pred ccccCCccccCCC--CCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccccccc--
Q 041178 263 LSGPIPSVIGNLE--SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGV-- 338 (725)
Q Consensus 263 l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-- 338 (725)
++..-+ +..+. .|+.+++++|++. ..+..+..+..+..+++.+|.+... ..+.....+..+....+.+...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence 764332 22233 3889999999887 3435667788899999999888764 2234445666666666665421
Q ss_pred -CCcc-CcCCCCCCEEEccCCcCcc
Q 041178 339 -IPSS-IGNLSNLRLLYLYNNGFYG 361 (725)
Q Consensus 339 -~~~~-l~~l~~L~~L~L~~n~l~~ 361 (725)
.... ....+.++.+.+..|....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 1111 3344555555555555443
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.78 E-value=7.8e-09 Score=71.18 Aligned_cols=42 Identities=40% Similarity=0.964 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeC
Q 041178 26 TKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCN 79 (725)
Q Consensus 26 ~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~ 79 (725)
++|++||++||+++..++.+.+.+|+ .+. ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~---~~~---------~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN---PSS---------DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT-----TT-----------S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC---CcC---------CCCCeeeccEEeC
Confidence 68999999999999876668899996 220 1589999999995
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=3.5e-09 Score=79.90 Aligned_cols=60 Identities=40% Similarity=0.574 Sum_probs=39.6
Q ss_pred ccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCc
Q 041178 588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 647 (725)
+|++|++++|+++...+..|.++++|++|++++|++....|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666555556666666777777777766666666667777777777776654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=6e-09 Score=78.61 Aligned_cols=60 Identities=38% Similarity=0.465 Sum_probs=39.5
Q ss_pred CCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCcc
Q 041178 564 KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 623 (725)
+|++|++++|++....+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666666666667777777777777654
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=1.5e-09 Score=115.34 Aligned_cols=126 Identities=30% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596 (725)
Q Consensus 517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
|...+.++|.+. .+..++.-++.|+.|||++|++... +.+..|+.|++|||++|.+....--...++. |+.|+|++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 555666666666 4555666667777777777777653 3566777777777777776533222333444 77777777
Q ss_pred cccCccCcccccCCCCCCEEeCCCCccccccC-ccccCCCCCCEEeCcCCCcc
Q 041178 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP-RCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~ 648 (725)
|.++... .+.++++|+.||+++|-+++.-. .-+..|.+|+.|.+.+||+.
T Consensus 242 N~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7774432 46677777777777777664321 11344556777777777764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.4e-08 Score=108.22 Aligned_cols=126 Identities=35% Similarity=0.335 Sum_probs=63.9
Q ss_pred CcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572 (725)
Q Consensus 493 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
|.+.+.++|++. .+...+.-++.|+.|+|++|+++... .+..++.|+.|||++|.+.....-...++. |+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 444555555544 33344444555566666666665322 455556666666666655542111222333 66666666
Q ss_pred CcCcccChhhhhcccccccccccccccCccCc-ccccCCCCCCEEeCCCCccc
Q 041178 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP-FQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~ 624 (725)
|.++.. ..+.++.+|+.||+++|-+.+.-. .-++.+..|..|.|.+|.+.
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 655322 234555666666666665544311 12344555666666666654
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6e-08 Score=92.93 Aligned_cols=155 Identities=22% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCCEEeCcCCccccc-cCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccccc--CchhhhcCCCCCeE
Q 041178 444 NLTFLDLSQNNFYGE-ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGE--IPVQLAKLFSLNKL 520 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~L~~L 520 (725)
.|+++|++...++.. .-.-+..|.+|+.|.+.++++...+-..+.+-..|+.|+++.+.--.. ..-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555422 111234556666666666666655555555556666666665542111 11234556666666
Q ss_pred eccCceecCCCCcc-ccC-cccccccccccccc---ccccccccccCCCCCEEeCCCCcC-cccChhhhhcccccccccc
Q 041178 521 ILSLNQLSGGMPFE-LGS-LTELQYLDLSANKL---RSWIPKSIGNLLKLRYLNLSNNQF-IQKIPIEVEKLIHLSKLDL 594 (725)
Q Consensus 521 ~L~~n~l~~~~~~~-~~~-l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L 594 (725)
+|+-|.+....-.. +.. -++|+.|+|+++.- ...+..-...+++|.+||||+|.- +...-.+|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66665544322111 111 14455555555421 001111123455555555555432 2222223344444555544
Q ss_pred cccc
Q 041178 595 SYNF 598 (725)
Q Consensus 595 s~N~ 598 (725)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 4444
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=2.4e-07 Score=78.63 Aligned_cols=82 Identities=27% Similarity=0.258 Sum_probs=38.3
Q ss_pred CCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccc
Q 041178 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLS 595 (725)
Q Consensus 516 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 595 (725)
.|+..+|++|.+....+..-..++.++.|+|++|.++. +|+.+..++.|+.|+++.|++. ..|..+..+.++..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 34444555555552222222233445555555555544 4444555555555555555543 333334444444445544
Q ss_pred cccc
Q 041178 596 YNFL 599 (725)
Q Consensus 596 ~N~l 599 (725)
+|..
T Consensus 132 ~na~ 135 (177)
T KOG4579|consen 132 ENAR 135 (177)
T ss_pred CCcc
Confidence 4444
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=5.5e-07 Score=86.45 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=106.7
Q ss_pred CCCCcEEECcCccccc--cccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc-cCCccccccCCCc
Q 041178 418 LTSLERVRFNQNNLSG--KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG-SIPLEIGESFKLQ 494 (725)
Q Consensus 418 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~~~~l~~L~ 494 (725)
++.++.+++.+|.++. ++...+.++|.|++|+++.|++...+...-....+|+++.+.+..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4455555666655542 233334556666666666666654443322344556666655544331 1122334455555
Q ss_pred EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCc--cccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPF--ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572 (725)
Q Consensus 495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
+|+++.|. ++.+++..|-.....|. .+...+.+..+.++-|++.... +++..+-+..
T Consensus 150 elHmS~N~--------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F-------pnv~sv~v~e 208 (418)
T KOG2982|consen 150 ELHMSDNS--------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF-------PNVNSVFVCE 208 (418)
T ss_pred hhhhccch--------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc-------ccchheeeec
Confidence 66665553 22333333333321111 1223344444444555554433 3455666666
Q ss_pred CcCcccC-hhhhhcccccccccccccccCcc-CcccccCCCCCCEEeCCCCccccccCc------cccCCCCCCEEeCc
Q 041178 573 NQFIQKI-PIEVEKLIHLSKLDLSYNFLGKE-MPFQICNMKSLEKLNLCHNNLSGFIPR------CFEGMHNLSHIDIS 643 (725)
Q Consensus 573 n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~ls 643 (725)
|++.... -..+..++.+..|+|+.|++..- --+++..+++|..|.+++|.+...... -++.+++++.|+=+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 6654322 22345566677788888887332 124567788888888888887643321 14667777777643
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=1.2e-07 Score=80.46 Aligned_cols=57 Identities=28% Similarity=0.414 Sum_probs=25.9
Q ss_pred ccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCC
Q 041178 588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 646 (725)
.++.|++++|.+ ..+|..+..++.|+.|+++.|.+. ..|.-+..|.++..||.-+|.
T Consensus 78 t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 78 TATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 444445555544 334444444555555555555444 223333334444444444443
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=8e-08 Score=92.07 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=80.4
Q ss_pred CCcEEEcCCCcCCCC-CCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCc-cccc-cCccccCCCCCcEE
Q 041178 396 ELVLVNMCENHLSGP-IPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN-FYGE-ISFNWRNFPKLGTF 472 (725)
Q Consensus 396 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~~-~~~~~~~~~~L~~L 472 (725)
.|+++|++...++.. +-..+..|.+|+.|.+.++++...+...+++-.+|+.++++.+. ++.. ...-+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555421 22234556777777777777777777777777778888877653 2211 11125567777777
Q ss_pred ECCCCcccccCCc-cccc-cCCCcEEEccCCccc---ccCchhhhcCCCCCeEeccCce-ecCCCCccccCccccccccc
Q 041178 473 IVSMNNISGSIPL-EIGE-SFKLQVLDISSNHIV---GEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSLTELQYLDL 546 (725)
Q Consensus 473 ~l~~n~~~~~~p~-~~~~-l~~L~~L~Ls~n~l~---~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 546 (725)
+++.|.+....-. .+.+ -++|+.|++++++-. ..+...-..|++|..|||++|. ++...-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777665432211 1111 235666666665421 1111222345555555555543 22222223344455555555
Q ss_pred cccc
Q 041178 547 SANK 550 (725)
Q Consensus 547 s~n~ 550 (725)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5553
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=1.4e-06 Score=82.63 Aligned_cols=137 Identities=21% Similarity=0.168 Sum_probs=58.1
Q ss_pred cCCCCCcEEECcCcccccccccc----ccCCCCCCEEeCcCCccccccCcc-------------ccCCCCCcEEECCCCc
Q 041178 416 RNLTSLERVRFNQNNLSGKVYEA----FGYHPNLTFLDLSQNNFYGEISFN-------------WRNFPKLGTFIVSMNN 478 (725)
Q Consensus 416 ~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~ls~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~ 478 (725)
.+|++|+.++++.|.+....|.. ++....|.+|.+++|.+....... ..+-|.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34555555555555544433322 233445555555555442111111 1234555555555555
Q ss_pred ccccC----CccccccCCCcEEEccCCccccc-----CchhhhcCCCCCeEeccCceecCC----CCccccCcccccccc
Q 041178 479 ISGSI----PLEIGESFKLQVLDISSNHIVGE-----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLD 545 (725)
Q Consensus 479 ~~~~~----p~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 545 (725)
+..-- ...+..-..|+++.+.+|.|.-. +...+..+.+|+.|||.+|-++-. +...+..++.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 43100 00111123455555555554321 111223345555555555555421 112233344455555
Q ss_pred ccccccc
Q 041178 546 LSANKLR 552 (725)
Q Consensus 546 Ls~n~l~ 552 (725)
+.+|-++
T Consensus 249 lnDClls 255 (388)
T COG5238 249 LNDCLLS 255 (388)
T ss_pred ccchhhc
Confidence 5555443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.3e-06 Score=84.01 Aligned_cols=86 Identities=24% Similarity=0.248 Sum_probs=43.9
Q ss_pred CCCCCCEEEccCCcCCC--CCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCC
Q 041178 153 HLNQLRSLYFDVNQLHG--PIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSI 229 (725)
Q Consensus 153 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L 229 (725)
.+++++.+||.+|.++. .+-.-+.+++.|++|+++.|.+...|-..=....+|++|-|.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34555666666665542 222234556666666666666553332111344566666666655432 122334455666
Q ss_pred CEEEccCCc
Q 041178 230 STLDLSKNQ 238 (725)
Q Consensus 230 ~~L~Ls~n~ 238 (725)
+.|.+|.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666553
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=1.6e-06 Score=82.19 Aligned_cols=166 Identities=20% Similarity=0.131 Sum_probs=108.5
Q ss_pred ccccCCCCCCEEeCcCCccccccCcc----ccCCCCCcEEECCCCcccccCCcc-------------ccccCCCcEEEcc
Q 041178 437 EAFGYHPNLTFLDLSQNNFYGEISFN----WRNFPKLGTFIVSMNNISGSIPLE-------------IGESFKLQVLDIS 499 (725)
Q Consensus 437 ~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~p~~-------------~~~l~~L~~L~Ls 499 (725)
.++.+||.|+.+++|+|-+....|.. ++.-..|..|.+++|.+...--.- ...-|.|++.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 34568999999999999987665544 566788999999998765321111 2235678888888
Q ss_pred CCcccccCc----hhhhcCCCCCeEeccCceecCC-----CCccccCccccccccccccccccc----cccccccCCCCC
Q 041178 500 SNHIVGEIP----VQLAKLFSLNKLILSLNQLSGG-----MPFELGSLTELQYLDLSANKLRSW----IPKSIGNLLKLR 566 (725)
Q Consensus 500 ~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~ 566 (725)
.|++..-.. ..+..-..|+.+.+..|.|... +-..+..+.+|+.|||.+|.++-. ....+..++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 888753222 2333446788888888877632 111235678888888888877542 234455667788
Q ss_pred EEeCCCCcCcccChhhh----h--cccccccccccccccCcc
Q 041178 567 YLNLSNNQFIQKIPIEV----E--KLIHLSKLDLSYNFLGKE 602 (725)
Q Consensus 567 ~L~Ls~n~l~~~~p~~~----~--~l~~L~~L~Ls~N~l~~~ 602 (725)
+|.+..|-++..-..++ . ..++|..|-..+|...+.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 88888887765543332 1 236667777777766443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=7.7e-05 Score=77.45 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=79.1
Q ss_pred ccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCc-eecCCCCccccCcccc
Q 041178 463 WRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLN-QLSGGMPFELGSLTEL 541 (725)
Q Consensus 463 ~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L 541 (725)
+..+.+++.|++++|.+. .+|. -..+|++|.+++|.-...+|..+. ++|+.|++++| .+. .+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 445688888999888766 3452 234688888887665455665442 47888888887 443 344 346
Q ss_pred cccccccccccc--ccccccccCCCCCEEeCCCCcCc--ccChhhhhcc-cccccccccccccCccCcccccCCCCCCEE
Q 041178 542 QYLDLSANKLRS--WIPKSIGNLLKLRYLNLSNNQFI--QKIPIEVEKL-IHLSKLDLSYNFLGKEMPFQICNMKSLEKL 616 (725)
Q Consensus 542 ~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 616 (725)
+.|+++.+.... .+| ++|+.|.+.+++.. ..+|. .+ ++|++|++++|... ..|..+. .+|+.|
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 666666554322 122 34666666443211 11111 12 56788888877764 3343333 578888
Q ss_pred eCCCC
Q 041178 617 NLCHN 621 (725)
Q Consensus 617 ~Ls~N 621 (725)
+++.|
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 88776
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=3.9e-05 Score=52.83 Aligned_cols=36 Identities=42% Similarity=0.672 Sum_probs=16.9
Q ss_pred ccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178 588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555553 23334555555555555555554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.8e-05 Score=52.37 Aligned_cols=36 Identities=42% Similarity=0.718 Sum_probs=15.0
Q ss_pred CCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCC
Q 041178 132 KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLH 168 (725)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 168 (725)
+|++|++++|+++ .+|+.+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00012 Score=76.06 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=90.0
Q ss_pred ccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccc-ccccccccccccCCCC
Q 041178 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSAN-KLRSWIPKSIGNLLKL 565 (725)
Q Consensus 487 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 565 (725)
+..+.+++.|++++|.++. +|. -..+|++|.++++.--..+|..+ .++|++|++++| .+.. +| .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc------ccc
Confidence 4457889999999998763 452 23469999998865444677655 368999999998 4543 45 357
Q ss_pred CEEeCCCCcCc--ccChhhhhcccccccccccccccC--ccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEe
Q 041178 566 RYLNLSNNQFI--QKIPIEVEKLIHLSKLDLSYNFLG--KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641 (725)
Q Consensus 566 ~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 641 (725)
+.|+++.+... +.+|. +|+.|.+.+++.. ..+|..+ .++|++|++++|... ..|..+. .+|++|+
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 88888776542 33443 4566776543311 1122221 268999999999865 3454444 5899999
Q ss_pred CcCCC
Q 041178 642 ISYNE 646 (725)
Q Consensus 642 ls~N~ 646 (725)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 98873
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.56 E-value=2.8e-05 Score=87.65 Aligned_cols=134 Identities=24% Similarity=0.281 Sum_probs=75.4
Q ss_pred CCCCEEECCCCCC-CCCCCccCc-CCCCCCEEEccCCcCCCC-CCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178 131 SKLQHLDLGNNQL-TGVIPPEIG-HLNQLRSLYFDVNQLHGP-IPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207 (725)
Q Consensus 131 ~~L~~L~Ls~n~l-~~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 207 (725)
.+|++||+++... ...-|..++ -+|+|++|.+++-.+... .-.-..++++|..||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5667777766532 222223333 367777777766554321 122335667777777777766633 45667777777
Q ss_pred EEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccC------CccccCCCCCCceeecccccccc
Q 041178 208 FYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSI------PFSLGNLSNLGILYLYSNSLSGP 266 (725)
Q Consensus 208 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~ 266 (725)
|.+.+-.+.. ..-..+.++++|++||+|........ -+.-..+|+|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7776655432 11234556777777777765433111 11223467788888877766543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00019 Score=65.72 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=69.5
Q ss_pred cccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccC-cccccCCCCCCEEe
Q 041178 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEM-PFQICNMKSLEKLN 617 (725)
Q Consensus 539 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ 617 (725)
.+...+||++|.+... +.|..++.|.+|.+.+|.++.+-|.--.-++.|+.|.|.+|.+...- -..+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4556677777776542 34666777777777777777666654455567777777777764321 12356788888998
Q ss_pred CCCCcccccc---CccccCCCCCCEEeCcCC
Q 041178 618 LCHNNLSGFI---PRCFEGMHNLSHIDISYN 645 (725)
Q Consensus 618 Ls~N~l~~~~---p~~l~~l~~L~~L~ls~N 645 (725)
+-+|+.+..- -..+..+++|+.||++.=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888876321 123567788888887654
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.38 E-value=0.00053 Score=60.62 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=12.3
Q ss_pred ccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccC
Q 041178 127 VGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV 164 (725)
Q Consensus 127 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 164 (725)
|.++++|+.+.+.. .+.......|.++++|+.+.+..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 44444455554442 23322333344444444444443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00029 Score=64.54 Aligned_cols=101 Identities=25% Similarity=0.288 Sum_probs=44.1
Q ss_pred CCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCC-CCCcCCCCCCcEEEcc
Q 041178 133 LQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPI-PPSLGNLSNLANFYLN 211 (725)
Q Consensus 133 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~ 211 (725)
...+||++|.+... +.|..+++|.+|.+.+|+++.+-|.--..+++|..|.|.+|++.... -+-+..|++|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34445555544321 23444555555555555555333332223344555555555443210 0123445555555555
Q ss_pred CCcCCccCc---cccCCCCCCCEEEcc
Q 041178 212 NNLLFDSIP---LVLGNLKSISTLDLS 235 (725)
Q Consensus 212 ~n~l~~~~p---~~l~~l~~L~~L~Ls 235 (725)
+|.....-- ..+..+|+|+.||+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehh
Confidence 554432211 223344555555554
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.31 E-value=0.0011 Score=58.59 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=38.7
Q ss_pred cCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCC
Q 041178 199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLL 278 (725)
Q Consensus 199 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 278 (725)
|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444432 222222334444444555444432 3322223344444455555433 22222233444455555
Q ss_pred EEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcc
Q 041178 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSL 325 (725)
Q Consensus 279 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 325 (725)
.+++..+ +.......|.++ +|+.+.+.. .+..+....|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555443 332333444444 555555543 3333333444444443
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=6.7e-05 Score=84.72 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCCCEEEccCCcC-CCCCCcccc-CCCCCCEEEcCCCcCCCC-CCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCE
Q 041178 155 NQLRSLYFDVNQL-HGPIPQEIG-QLSLINELALCHNNLYGP-IPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIST 231 (725)
Q Consensus 155 ~~L~~L~L~~n~l-~~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 231 (725)
.+|++||+++... ....|..++ .+|+|+.|.+++-.+... .-....++++|..||++++.++.. ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566666666442 222333333 356666666665444321 112234566666666666665433 44566666666
Q ss_pred EEccCCcCcc-cCCccccCCCCCCceeeccccccccC------CccccCCCCCCEEEccCCcccc
Q 041178 232 LDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPI------PSVIGNLESLLQLDLSENQLSG 289 (725)
Q Consensus 232 L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~ 289 (725)
|.+.+-.+.. ..-..+.++++|+.||+|........ -+.-..+++|+.||.+++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6665544442 11123455666666666654433111 0111235666666666655543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00066 Score=65.05 Aligned_cols=9 Identities=33% Similarity=0.213 Sum_probs=3.8
Q ss_pred CCCCCCcee
Q 041178 249 NLSNLGILY 257 (725)
Q Consensus 249 ~l~~L~~L~ 257 (725)
-+++|.+|+
T Consensus 141 ll~~L~~LD 149 (260)
T KOG2739|consen 141 LLPSLKYLD 149 (260)
T ss_pred Hhhhhcccc
Confidence 344444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.0014 Score=62.84 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=15.4
Q ss_pred cccccccccccc--ccccccccccccCCCCCEEeCCCCcC
Q 041178 538 LTELQYLDLSAN--KLRSWIPKSIGNLLKLRYLNLSNNQF 575 (725)
Q Consensus 538 l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
+++|++|.++.| ++.+..+.-...+++|+++++++|++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344444444444 33322222223334444444444444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00067 Score=65.16 Aligned_cols=99 Identities=21% Similarity=0.174 Sum_probs=52.5
Q ss_pred cccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc-ccccCCCCCCEEe
Q 041178 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP-FQICNMKSLEKLN 617 (725)
Q Consensus 539 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ 617 (725)
.+.+.|++.+|.++.+ .....++.|+.|.||-|+++..- .+..|+.|++|+|..|.|...-. .-+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555543 23445556666666666654332 24556666666666666633211 2245566666666
Q ss_pred CCCCccccccCcc-----ccCCCCCCEEe
Q 041178 618 LCHNNLSGFIPRC-----FEGMHNLSHID 641 (725)
Q Consensus 618 Ls~N~l~~~~p~~-----l~~l~~L~~L~ 641 (725)
|..|.=.|.-+.. +.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666655544432 33455555554
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.65 E-value=0.00036 Score=70.88 Aligned_cols=133 Identities=20% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCCCCeEeccCceecCCCC--ccccCcccccccccccccc-ccccccc-cccCCCCCEEeCCCCcCccc--Chhhhhccc
Q 041178 514 LFSLNKLILSLNQLSGGMP--FELGSLTELQYLDLSANKL-RSWIPKS-IGNLLKLRYLNLSNNQFIQK--IPIEVEKLI 587 (725)
Q Consensus 514 ~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l-~~~~~~~-~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~ 587 (725)
+..|+.++.+++...+..+ .--.+..+|+.|.++.|+- +..--.. -.+++.|+.+++..+..... +..--.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 5556666666554322111 1123456666666666652 1110011 13456677777766654211 111123456
Q ss_pred ccccccccccccCccC-----cccccCCCCCCEEeCCCCcccc-ccCccccCCCCCCEEeCcCCC
Q 041178 588 HLSKLDLSYNFLGKEM-----PFQICNMKSLEKLNLCHNNLSG-FIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~ls~N~ 646 (725)
.|++|.|+++...... ...-..+..|+.+.|++++... ..-..+..+++|+.+++-++.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777777777653221 1222345677778888876542 222345566777777766654
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0056 Score=34.94 Aligned_cols=19 Identities=53% Similarity=0.761 Sum_probs=10.3
Q ss_pred CCEEeCCCCccccccCcccc
Q 041178 613 LEKLNLCHNNLSGFIPRCFE 632 (725)
Q Consensus 613 L~~L~Ls~N~l~~~~p~~l~ 632 (725)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555556655555 4554444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.0021 Score=61.84 Aligned_cols=100 Identities=21% Similarity=0.122 Sum_probs=58.9
Q ss_pred CCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCC-CccccCccccccc
Q 041178 466 FPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM-PFELGSLTELQYL 544 (725)
Q Consensus 466 ~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 544 (725)
+.+.+.|++.+|.++.. .....++.|++|.||-|+|+..-| +..|++|++|+|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556677777766532 223456777777777777764433 566777777777777666321 1234566777777
Q ss_pred ccccccccccccc-----ccccCCCCCEEe
Q 041178 545 DLSANKLRSWIPK-----SIGNLLKLRYLN 569 (725)
Q Consensus 545 ~Ls~n~l~~~~~~-----~~~~l~~L~~L~ 569 (725)
.|..|+-.|.-+. .+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777665543332 234455666554
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.34 E-value=0.00034 Score=71.06 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCCEEEccCCccccccC--CCCCCCCCccEEEccCCcC-cccCcc-cccCCCcccccccccc-cccccCCc-cCcCCCCC
Q 041178 276 SLLQLDLSENQLSGSIP--ISLGNLSSLTVMSLFSNSL-SSFIPP-ILGNLKSLSALGLHIN-QLNGVIPS-SIGNLSNL 349 (725)
Q Consensus 276 ~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l-~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L 349 (725)
.|+.|.+.+++-.+.-+ .....++++++|++.++.. +...-. .-..+++|+++++..+ .++...-. --..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666666664332211 1123566777776666652 111111 1124566666666552 22221111 12345566
Q ss_pred CEEEccCCc
Q 041178 350 RLLYLYNNG 358 (725)
Q Consensus 350 ~~L~L~~n~ 358 (725)
++++++.+.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666553
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.32 E-value=0.0028 Score=70.23 Aligned_cols=123 Identities=22% Similarity=0.090 Sum_probs=52.6
Q ss_pred CCCCCEEeCcCCc-cccccCcccc-CCCCCcEEECCCCc-ccccC-CccccccCCCcEEEccCCccc--ccCchhhhcCC
Q 041178 442 HPNLTFLDLSQNN-FYGEISFNWR-NFPKLGTFIVSMNN-ISGSI-PLEIGESFKLQVLDISSNHIV--GEIPVQLAKLF 515 (725)
Q Consensus 442 ~~~L~~L~ls~n~-l~~~~~~~~~-~~~~L~~L~l~~n~-~~~~~-p~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~~ 515 (725)
+++|+.++++.+. ++...-..+. .|++|+.|.+.++. ++... -.....++.|++|+++.|... ..+.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 3455555555544 2221111111 25555555544444 22211 112233555666666665542 11222334455
Q ss_pred CCCeEeccCceecCCCCccccCccccccccccccccc---cccccccccCCCCCEEeCCCCc
Q 041178 516 SLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR---SWIPKSIGNLLKLRYLNLSNNQ 574 (725)
Q Consensus 516 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~ 574 (725)
+++.|.+.... .+..++.+.++...-. .........++.++.+.+..+.
T Consensus 322 ~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 322 NLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred chhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 55554332211 1344444444433221 1122234556666666666665
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.04 E-value=0.0029 Score=70.15 Aligned_cols=172 Identities=20% Similarity=0.082 Sum_probs=76.5
Q ss_pred CCCCcEEECcCcccccc--ccccccCCCCCCEEeCcCC-ccccccC----ccccCCCCCcEEECCCCc-ccccCCcccc-
Q 041178 418 LTSLERVRFNQNNLSGK--VYEAFGYHPNLTFLDLSQN-NFYGEIS----FNWRNFPKLGTFIVSMNN-ISGSIPLEIG- 488 (725)
Q Consensus 418 l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n-~l~~~~~----~~~~~~~~L~~L~l~~n~-~~~~~p~~~~- 488 (725)
++.|+.+.+..+.-... .......++.|+.|+++++ ......+ .....+++|+.++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 34455555444422211 2233445666777777652 1111111 123345667777776665 3322212222
Q ss_pred ccCCCcEEEccCCc-ccccCc-hhhhcCCCCCeEeccCceecCC--CCccccCccccccccccccccccccccccccCCC
Q 041178 489 ESFKLQVLDISSNH-IVGEIP-VQLAKLFSLNKLILSLNQLSGG--MPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564 (725)
Q Consensus 489 ~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 564 (725)
.+++|+.|.+.+|. +++..- .....+++|++|+++++..... +.....++++|+.|.+.... .+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence 25667776666555 333222 2234466666666665544311 11112234444443332211 1233
Q ss_pred CCEEeCCCCcCc---ccChhhhhccccccccccccccc
Q 041178 565 LRYLNLSNNQFI---QKIPIEVEKLIHLSKLDLSYNFL 599 (725)
Q Consensus 565 L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l 599 (725)
++.+.+...... .........++.++.+.+.++..
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 333333332221 12222345667777777777663
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.65 E-value=0.01 Score=33.81 Aligned_cols=19 Identities=42% Similarity=0.447 Sum_probs=9.2
Q ss_pred cccccccccccCccCccccc
Q 041178 589 LSKLDLSYNFLGKEMPFQIC 608 (725)
Q Consensus 589 L~~L~Ls~N~l~~~~p~~~~ 608 (725)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555554 4444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.41 E-value=0.0011 Score=71.84 Aligned_cols=84 Identities=29% Similarity=0.302 Sum_probs=42.1
Q ss_pred CCCEEeCcCCccccccCc----cccCCCCCcEEECCCCcccccCCcc----cccc-CCCcEEEccCCccccc----Cchh
Q 041178 444 NLTFLDLSQNNFYGEISF----NWRNFPKLGTFIVSMNNISGSIPLE----IGES-FKLQVLDISSNHIVGE----IPVQ 510 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~p~~----~~~l-~~L~~L~Ls~n~l~~~----~~~~ 510 (725)
.+..+.+.+|.+...... .+...+.|+.|++++|.+.+.--.. +... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 366777777777654222 2445666666777766665321111 1111 2344555555555432 2233
Q ss_pred hhcCCCCCeEeccCcee
Q 041178 511 LAKLFSLNKLILSLNQL 527 (725)
Q Consensus 511 ~~~~~~L~~L~L~~n~l 527 (725)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 33445555555555554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.89 E-value=0.0017 Score=70.35 Aligned_cols=109 Identities=27% Similarity=0.248 Sum_probs=67.2
Q ss_pred CCcEEECcCcccccccc----ccccCCCCCCEEeCcCCccccccCc----cccCC-CCCcEEECCCCccccc----CCcc
Q 041178 420 SLERVRFNQNNLSGKVY----EAFGYHPNLTFLDLSQNNFYGEISF----NWRNF-PKLGTFIVSMNNISGS----IPLE 486 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~~-~~L~~L~l~~n~~~~~----~p~~ 486 (725)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+.+.... .+... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36778888888765433 4456778899999999988743221 12222 5567777777777653 3445
Q ss_pred ccccCCCcEEEccCCcccc----cCchhhh----cCCCCCeEeccCceec
Q 041178 487 IGESFKLQVLDISSNHIVG----EIPVQLA----KLFSLNKLILSLNQLS 528 (725)
Q Consensus 487 ~~~l~~L~~L~Ls~n~l~~----~~~~~~~----~~~~L~~L~L~~n~l~ 528 (725)
+.....++.++++.|.+.. .++..+. ...++++|++.+|.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 5567788888998888731 1222222 2445555666655554
No 76
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=91.11 E-value=0.28 Score=31.62 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=4.3
Q ss_pred HHhhcccccCC
Q 041178 715 LFQRRNDSTKQ 725 (725)
Q Consensus 715 ~~~~~~~~~k~ 725 (725)
+++||.+++|+
T Consensus 28 Ccykk~~~~k~ 38 (38)
T PF02439_consen 28 CCYKKHRRQKM 38 (38)
T ss_pred HHHcccccccC
Confidence 33333333353
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.27 E-value=0.02 Score=53.91 Aligned_cols=88 Identities=23% Similarity=0.241 Sum_probs=61.5
Q ss_pred cccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCC
Q 041178 534 ELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSL 613 (725)
Q Consensus 534 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 613 (725)
.+......+.||++.|++.. .-..|+-++.+..||++.|++ ...|..++++..++.+++..|.. ...|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccch-hhCCccccccCCc
Confidence 34455666777777777654 334566666777777777776 36777777777777777777777 5567777777888
Q ss_pred CEEeCCCCccc
Q 041178 614 EKLNLCHNNLS 624 (725)
Q Consensus 614 ~~L~Ls~N~l~ 624 (725)
+++++.+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88887777754
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.25 E-value=0.026 Score=53.18 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=75.6
Q ss_pred cccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCC
Q 041178 557 KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHN 636 (725)
Q Consensus 557 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 636 (725)
..+......+.||++.|++. ..-..|+-++.|..|+++.|.+ ...|..++....+..+++..|..+ ..|.++...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34555677889999999874 3444677788999999999999 678889999999999999999998 77999999999
Q ss_pred CCEEeCcCCCcc
Q 041178 637 LSHIDISYNELQ 648 (725)
Q Consensus 637 L~~L~ls~N~l~ 648 (725)
+++++.-.|++.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999874
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.02 E-value=0.23 Score=26.15 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=4.8
Q ss_pred CCCEEeCCCCccc
Q 041178 612 SLEKLNLCHNNLS 624 (725)
Q Consensus 612 ~L~~L~Ls~N~l~ 624 (725)
+|+.|++++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.58 E-value=0.44 Score=28.27 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=12.4
Q ss_pred CCCCCEEeCCCCccccccCc
Q 041178 610 MKSLEKLNLCHNNLSGFIPR 629 (725)
Q Consensus 610 l~~L~~L~Ls~N~l~~~~p~ 629 (725)
+++|++|+|++|++....+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777644333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.58 E-value=0.44 Score=28.27 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=12.4
Q ss_pred CCCCCEEeCCCCccccccCc
Q 041178 610 MKSLEKLNLCHNNLSGFIPR 629 (725)
Q Consensus 610 l~~L~~L~Ls~N~l~~~~p~ 629 (725)
+++|++|+|++|++....+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777644333
No 82
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.96 E-value=0.6 Score=39.91 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=9.9
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhhccc
Q 041178 695 VMFSSLVMIILLICLIGFKVLFQRRND 721 (725)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (725)
++|++.+++.++.+++.+.|+.+|+||
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333333344444333
No 83
>PF15102 TMEM154: TMEM154 protein family
Probab=85.96 E-value=0.59 Score=40.82 Aligned_cols=7 Identities=0% Similarity=0.425 Sum_probs=2.9
Q ss_pred eEEeehH
Q 041178 692 WVVVMFS 698 (725)
Q Consensus 692 ~~~~~~~ 698 (725)
.++|+|.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 3344444
No 84
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=85.27 E-value=0.49 Score=31.17 Aligned_cols=8 Identities=38% Similarity=0.762 Sum_probs=3.3
Q ss_pred HHHHHhhc
Q 041178 712 FKVLFQRR 719 (725)
Q Consensus 712 ~~~~~~~~ 719 (725)
+.++|+||
T Consensus 31 ~l~~~~rR 38 (40)
T PF08693_consen 31 FLFFWYRR 38 (40)
T ss_pred HhheEEec
Confidence 33434444
No 85
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=82.56 E-value=0.71 Score=46.44 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=2.9
Q ss_pred HHHHHhhc
Q 041178 712 FKVLFQRR 719 (725)
Q Consensus 712 ~~~~~~~~ 719 (725)
|.++++||
T Consensus 276 YLILRYRR 283 (299)
T PF02009_consen 276 YLILRYRR 283 (299)
T ss_pred HHHHHHHH
Confidence 33333333
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.38 E-value=0.5 Score=27.41 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=6.3
Q ss_pred CCCCEEeCCCCcCcc
Q 041178 563 LKLRYLNLSNNQFIQ 577 (725)
Q Consensus 563 ~~L~~L~Ls~n~l~~ 577 (725)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 87
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=81.54 E-value=1.9 Score=33.61 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhccccc
Q 041178 706 LICLIGFKVLFQRRNDST 723 (725)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~ 723 (725)
+++++.|++++++|||.|
T Consensus 45 il~VilwfvCC~kRkrsR 62 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKRSR 62 (94)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 344444444554444443
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.45 E-value=1.5 Score=25.88 Aligned_cols=14 Identities=57% Similarity=0.653 Sum_probs=7.2
Q ss_pred CCCCEEeCCCCcCc
Q 041178 563 LKLRYLNLSNNQFI 576 (725)
Q Consensus 563 ~~L~~L~Ls~n~l~ 576 (725)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.45 E-value=1.5 Score=25.88 Aligned_cols=14 Identities=57% Similarity=0.653 Sum_probs=7.2
Q ss_pred CCCCEEeCCCCcCc
Q 041178 563 LKLRYLNLSNNQFI 576 (725)
Q Consensus 563 ~~L~~L~Ls~n~l~ 576 (725)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 90
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=80.11 E-value=0.64 Score=40.89 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=10.0
Q ss_pred ceEEeehHHHHHHHHHHHHHHHHH
Q 041178 691 KWVVVMFSSLVMIILLICLIGFKV 714 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~ 714 (725)
+.+++.+++.+.+.+++++++++|
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhhe
Confidence 344455544443333333333333
No 91
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=78.13 E-value=5 Score=37.67 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=12.7
Q ss_pred EEeehHHHHHHHHHHHHHHHHHHHhhccc
Q 041178 693 VVVMFSSLVMIILLICLIGFKVLFQRRND 721 (725)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (725)
++|.+++.+.+++++++++..|+.++||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 44444444433444444444444444443
No 92
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=76.25 E-value=3.2 Score=38.78 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=9.8
Q ss_pred ceEEeehHHHHHHHHHHHHHHHHHH
Q 041178 691 KWVVVMFSSLVMIILLICLIGFKVL 715 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (725)
.+++++++++++.++++++++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHH
Confidence 3444444444433333333333333
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.38 E-value=0.47 Score=44.13 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCCCEEeCCCCc-cccccCccccCCCCCCEEeCcCC
Q 041178 611 KSLEKLNLCHNN-LSGFIPRCFEGMHNLSHIDISYN 645 (725)
Q Consensus 611 ~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~ls~N 645 (725)
++|+.|+|++|. ++..--..+..+++|+.|.+.+=
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 567777777663 55333344555666666665543
No 94
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.00 E-value=0.79 Score=42.70 Aligned_cols=33 Identities=36% Similarity=0.244 Sum_probs=17.1
Q ss_pred CCCcEEEccCCc-ccccCchhhhcCCCCCeEecc
Q 041178 491 FKLQVLDISSNH-IVGEIPVQLAKLFSLNKLILS 523 (725)
Q Consensus 491 ~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~ 523 (725)
++|+.|++++|. |+..--..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 456666666553 444444445555555555444
No 95
>PTZ00046 rifin; Provisional
Probab=72.90 E-value=2 Score=43.92 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=7.6
Q ss_pred HHHHHHHHhhcccccC
Q 041178 709 LIGFKVLFQRRNDSTK 724 (725)
Q Consensus 709 ~~~~~~~~~~~~~~~k 724 (725)
+++|...++||+|+.|
T Consensus 332 vIIYLILRYRRKKKMk 347 (358)
T PTZ00046 332 VIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHhhhcchhH
Confidence 3444445555554443
No 96
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=72.44 E-value=2.1 Score=43.64 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=7.5
Q ss_pred HHHHHHHHhhcccccC
Q 041178 709 LIGFKVLFQRRNDSTK 724 (725)
Q Consensus 709 ~~~~~~~~~~~~~~~k 724 (725)
+++|...++||+|+.|
T Consensus 327 vIIYLILRYRRKKKMk 342 (353)
T TIGR01477 327 VIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHhhhcchhH
Confidence 3444444555554443
No 97
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=72.07 E-value=7.8 Score=25.45 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=10.1
Q ss_pred EeehHHHHHHHHHHHHHHHHHHHh
Q 041178 694 VVMFSSLVMIILLICLIGFKVLFQ 717 (725)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~ 717 (725)
.+.+++.++++.++++++|..+.-
T Consensus 12 lVF~lVglv~i~iva~~iYRKw~a 35 (43)
T PF08114_consen 12 LVFCLVGLVGIGIVALFIYRKWQA 35 (43)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=67.37 E-value=3.9 Score=33.59 Aligned_cols=6 Identities=0% Similarity=-0.175 Sum_probs=2.2
Q ss_pred eEEeeh
Q 041178 692 WVVVMF 697 (725)
Q Consensus 692 ~~~~~~ 697 (725)
..+..+
T Consensus 66 gaiagi 71 (96)
T PTZ00382 66 GAIAGI 71 (96)
T ss_pred ccEEEE
Confidence 333333
No 99
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.85 E-value=5.3 Score=23.78 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=10.7
Q ss_pred CCCCCEEeCCCCccc
Q 041178 610 MKSLEKLNLCHNNLS 624 (725)
Q Consensus 610 l~~L~~L~Ls~N~l~ 624 (725)
+++|+.|++++|++.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 100
>PTZ00370 STEVOR; Provisional
Probab=64.56 E-value=6.6 Score=38.65 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.6
Q ss_pred ehHHHHH
Q 041178 696 MFSSLVM 702 (725)
Q Consensus 696 ~~~~~~~ 702 (725)
+|+++|.
T Consensus 258 giaalvl 264 (296)
T PTZ00370 258 GIAALVL 264 (296)
T ss_pred HHHHHHH
Confidence 3333333
No 101
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=64.35 E-value=7 Score=38.37 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.6
Q ss_pred ehHHHHH
Q 041178 696 MFSSLVM 702 (725)
Q Consensus 696 ~~~~~~~ 702 (725)
+|+++|.
T Consensus 262 giaalvl 268 (295)
T TIGR01478 262 GIAALVL 268 (295)
T ss_pred HHHHHHH
Confidence 3333333
No 102
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=64.01 E-value=9.6 Score=41.91 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=22.5
Q ss_pred ccCccceEEeehHHHHHHHHHHHHHHHHHHHhh
Q 041178 686 QASRKKWVVVMFSSLVMIILLICLIGFKVLFQR 718 (725)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (725)
....+.|+++++++.++++++++++++|+++++
T Consensus 264 s~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 264 SPPNNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred CCCCCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 345678998888777666666666666666643
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.85 E-value=7.7 Score=23.06 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=8.1
Q ss_pred CCCEEeCCCCccc
Q 041178 612 SLEKLNLCHNNLS 624 (725)
Q Consensus 612 ~L~~L~Ls~N~l~ 624 (725)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4666666666665
No 104
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.09 E-value=9.3 Score=23.10 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=8.5
Q ss_pred CCCCEEeCCCCccc
Q 041178 611 KSLEKLNLCHNNLS 624 (725)
Q Consensus 611 ~~L~~L~Ls~N~l~ 624 (725)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 105
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=55.38 E-value=7.9 Score=25.68 Aligned_cols=25 Identities=28% Similarity=0.188 Sum_probs=14.2
Q ss_pred EEeehHHHHHHHHHHHHHHHHHHHh
Q 041178 693 VVVMFSSLVMIILLICLIGFKVLFQ 717 (725)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (725)
..+.+.++++++++.+.++++++++
T Consensus 15 ~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEechHHHHHHHHHHhheEEecc
Confidence 3344555555666666666665544
No 106
>PF15102 TMEM154: TMEM154 protein family
Probab=54.25 E-value=7.3 Score=34.26 Aligned_cols=15 Identities=7% Similarity=0.363 Sum_probs=8.1
Q ss_pred ceEEeehHHHHHHHH
Q 041178 691 KWVVVMFSSLVMIIL 705 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~ 705 (725)
..-.++++++-.+++
T Consensus 54 q~efiLmIlIP~VLL 68 (146)
T PF15102_consen 54 QLEFILMILIPLVLL 68 (146)
T ss_pred CcceEEEEeHHHHHH
Confidence 445566666663333
No 107
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=52.20 E-value=14 Score=32.34 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=20.8
Q ss_pred cceEEeehHHHHHHHHHHHHHHHHHHHhhcccc
Q 041178 690 KKWVVVMFSSLVMIILLICLIGFKVLFQRRNDS 722 (725)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
+..++.++.+.++++++++++++..++.+||..
T Consensus 118 ~nklilaisvtvv~~iliii~CLiei~shr~a~ 150 (154)
T PF14914_consen 118 NNKLILAISVTVVVMILIIIFCLIEICSHRRAS 150 (154)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345666666666666677777777666555543
No 108
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=52.09 E-value=7.9 Score=39.13 Aligned_cols=26 Identities=8% Similarity=0.255 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q 041178 698 SSLVMIILLICLIGFKVLFQRRNDST 723 (725)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (725)
+++++++.+++.++++|+++++++++
T Consensus 265 IliIVLIMvIIYLILRYRRKKKmkKK 290 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILRYRRKKKMKKK 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33444455667788999998776654
No 109
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=49.87 E-value=7.5 Score=39.92 Aligned_cols=8 Identities=25% Similarity=0.385 Sum_probs=3.2
Q ss_pred ceeccCCC
Q 041178 659 DARMEGNK 666 (725)
Q Consensus 659 ~~~~~gn~ 666 (725)
.|.+.++.
T Consensus 250 aF~~~~~~ 257 (306)
T PF01299_consen 250 AFRVKNNT 257 (306)
T ss_pred EEEecCCC
Confidence 34444443
No 110
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=49.00 E-value=5.7 Score=39.80 Aligned_cols=13 Identities=23% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhc
Q 041178 707 ICLIGFKVLFQRR 719 (725)
Q Consensus 707 ~~~~~~~~~~~~~ 719 (725)
+++++++++++||
T Consensus 161 IA~iIa~icyrrk 173 (290)
T PF05454_consen 161 IAGIIACICYRRK 173 (290)
T ss_dssp -------------
T ss_pred HHHHHHHHhhhhh
Confidence 3333344444433
No 111
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=47.23 E-value=13 Score=34.67 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=2.3
Q ss_pred EeCcCC
Q 041178 640 IDISYN 645 (725)
Q Consensus 640 L~ls~N 645 (725)
.|..++
T Consensus 9 ~d~~g~ 14 (179)
T PF13908_consen 9 YDVMGQ 14 (179)
T ss_pred ecCCCC
Confidence 333333
No 112
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=44.86 E-value=22 Score=32.30 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhh
Q 041178 706 LICLIGFKVLFQR 718 (725)
Q Consensus 706 ~~~~~~~~~~~~~ 718 (725)
+++.++++.++.|
T Consensus 108 ~i~yfvir~~R~r 120 (163)
T PF06679_consen 108 AILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHhhc
Confidence 3344444444333
No 113
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.62 E-value=23 Score=30.49 Aligned_cols=14 Identities=0% Similarity=0.071 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHhhc
Q 041178 706 LICLIGFKVLFQRR 719 (725)
Q Consensus 706 ~~~~~~~~~~~~~~ 719 (725)
++++.++..+++||
T Consensus 81 Illi~y~irR~~Kk 94 (122)
T PF01102_consen 81 ILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhcc
Confidence 33333333444433
No 114
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=43.96 E-value=13 Score=35.16 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=8.5
Q ss_pred EeehHHHHHHHHHHHHHHHHHHH
Q 041178 694 VVMFSSLVMIILLICLIGFKVLF 716 (725)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~ 716 (725)
.++|++-++++++++++++++++
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~ 181 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFW 181 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhhee
Confidence 33333333333333333333333
No 115
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=40.49 E-value=86 Score=33.67 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=48.6
Q ss_pred CCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccc---cCCCCCcEEECcCccccccccccccCC---CC
Q 041178 371 KSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSL---RNLTSLERVRFNQNNLSGKVYEAFGYH---PN 444 (725)
Q Consensus 371 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~ 444 (725)
+.+++++++.|.+....|..+..-. --+.+..+..+...-..+ ..-..+.+++++.|.....++.....+ ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 4567788888877665554443211 113344444332111000 111345667777776666666543322 23
Q ss_pred CCEEeCcCCccccc---cCccccCCCCCcEEECCCCc
Q 041178 445 LTFLDLSQNNFYGE---ISFNWRNFPKLGTFIVSMNN 478 (725)
Q Consensus 445 L~~L~ls~n~l~~~---~~~~~~~~~~L~~L~l~~n~ 478 (725)
++.++.+...+.-. .+..++.-+.++..+++.|.
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCC
Confidence 45555554433211 12223334455555555543
No 116
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=39.17 E-value=43 Score=22.89 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=25.2
Q ss_pred CchhhHHHHHHHHHHH---HH-hhccCCCHHHHHHHHHHHhhcC
Q 041178 1 MGISILNILILSLLLN---LS-HSIASYSTKEALALLKWKKSLQ 40 (725)
Q Consensus 1 ~~~~~~~~~~~~~~l~---~~-~~~~~~~~~~~~~ll~~k~~~~ 40 (725)
|-++|+-+++++++.. +. -..+-+..+||+||++-++.+.
T Consensus 1 mfiawywivli~lv~~gy~~hmkrycrafrqdrdallear~kl~ 44 (54)
T PF13260_consen 1 MFIAWYWIVLIVLVVVGYFCHMKRYCRAFRQDRDALLEARNKLF 44 (54)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5677776655444332 11 1335567799999999987653
No 117
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.14 E-value=85 Score=23.12 Aligned_cols=30 Identities=3% Similarity=0.093 Sum_probs=14.6
Q ss_pred cCccceEEeehHHHHHHHHHHHHHHHHHHH
Q 041178 687 ASRKKWVVVMFSSLVMIILLICLIGFKVLF 716 (725)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (725)
.+.+..++++++++..+++.++.-.+.|.+
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Y 37 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVY 37 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHH
Confidence 345556666665555444444443333333
No 118
>PF12669 P12: Virus attachment protein p12 family
Probab=38.01 E-value=19 Score=26.42 Aligned_cols=6 Identities=17% Similarity=-0.097 Sum_probs=2.4
Q ss_pred Hhhccc
Q 041178 716 FQRRND 721 (725)
Q Consensus 716 ~~~~~~ 721 (725)
++..|+
T Consensus 18 r~~~k~ 23 (58)
T PF12669_consen 18 RKFIKD 23 (58)
T ss_pred HHHHHH
Confidence 343433
No 119
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.53 E-value=20 Score=46.76 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=14.3
Q ss_pred ccccccCccCcccccCCCCCCEEeCCCCcc
Q 041178 594 LSYNFLGKEMPFQICNMKSLEKLNLCHNNL 623 (725)
Q Consensus 594 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 623 (725)
|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 445555444444444444455555544444
No 120
>PHA03265 envelope glycoprotein D; Provisional
Probab=35.15 E-value=20 Score=36.26 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=5.7
Q ss_pred HHHHHHHHHhhcc
Q 041178 708 CLIGFKVLFQRRN 720 (725)
Q Consensus 708 ~~~~~~~~~~~~~ 720 (725)
+-++++++|+||+
T Consensus 364 vg~il~~~~rr~k 376 (402)
T PHA03265 364 VGVILYVCLRRKK 376 (402)
T ss_pred hhHHHHHHhhhhh
Confidence 3333444454444
No 121
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=34.82 E-value=18 Score=37.14 Aligned_cols=25 Identities=8% Similarity=0.289 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 041178 699 SLVMIILLICLIGFKVLFQRRNDST 723 (725)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (725)
++++++.+++.++++|+++++.+++
T Consensus 320 vvIVLIMvIIYLILRYRRKKKMkKK 344 (353)
T TIGR01477 320 LIIVLIMVIIYLILRYRRKKKMKKK 344 (353)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHH
Confidence 3334445677777888877776654
No 122
>PTZ00046 rifin; Provisional
Probab=33.78 E-value=19 Score=37.12 Aligned_cols=23 Identities=9% Similarity=0.304 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 041178 701 VMIILLICLIGFKVLFQRRNDST 723 (725)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~ 723 (725)
++++.+++.++++|+++++++++
T Consensus 327 IVLIMvIIYLILRYRRKKKMkKK 349 (358)
T PTZ00046 327 IVLIMVIIYLILRYRRKKKMKKK 349 (358)
T ss_pred HHHHHHHHHHHHHhhhcchhHHH
Confidence 33444677777777777766554
No 123
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.16 E-value=35 Score=19.99 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=7.4
Q ss_pred CCCCEEeCCCCc
Q 041178 611 KSLEKLNLCHNN 622 (725)
Q Consensus 611 ~~L~~L~Ls~N~ 622 (725)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 124
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=29.51 E-value=49 Score=33.20 Aligned_cols=13 Identities=23% Similarity=0.099 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhh
Q 041178 706 LICLIGFKVLFQR 718 (725)
Q Consensus 706 ~~~~~~~~~~~~~ 718 (725)
++++++..++|+|
T Consensus 211 ~aAliva~~cW~R 223 (341)
T PF06809_consen 211 AAALIVAGYCWYR 223 (341)
T ss_pred HHHHHHhhheEEE
Confidence 3344444444443
No 125
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.80 E-value=39 Score=36.88 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCCCcEEECcCcccccccc--ccccCCCCCCEEeCcCC
Q 041178 418 LTSLERVRFNQNNLSGKVY--EAFGYHPNLTFLDLSQN 453 (725)
Q Consensus 418 l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~ls~n 453 (725)
.+.+..+.+++|++-.... ..-...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555566665432211 11122345555555555
No 126
>PF15345 TMEM51: Transmembrane protein 51
Probab=26.69 E-value=1e+02 Score=29.61 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 041178 700 LVMIILLICLIGFKVLFQRRND 721 (725)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~ 721 (725)
.+.++++++.+|+-++-+||++
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555444
No 127
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.86 E-value=69 Score=26.24 Aligned_cols=9 Identities=22% Similarity=0.301 Sum_probs=4.2
Q ss_pred CchhhHHHH
Q 041178 1 MGISILNIL 9 (725)
Q Consensus 1 ~~~~~~~~~ 9 (725)
|++-.++++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 555444443
No 128
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=25.30 E-value=2e+02 Score=37.56 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=12.1
Q ss_pred CCCCCEEeCcCCCccccCCCC
Q 041178 634 MHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 634 l~~L~~L~ls~N~l~g~ip~~ 654 (725)
|..=-.-...+|.+.+.+|.+
T Consensus 3911 C~~GgtCip~~n~f~CnC~~g 3931 (4289)
T KOG1219|consen 3911 CLTGGTCIPFYNGFLCNCPNG 3931 (4289)
T ss_pred CCCCCEEEecCCCeeEeCCCC
Confidence 333345556667676666654
No 129
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=25.10 E-value=58 Score=24.54 Aligned_cols=13 Identities=8% Similarity=0.399 Sum_probs=6.8
Q ss_pred ceEEeehHHHHHH
Q 041178 691 KWVVVMFSSLVMI 703 (725)
Q Consensus 691 ~~~~~~~~~~~~~ 703 (725)
.|..|.++..+++
T Consensus 32 qW~aIGvi~gi~~ 44 (68)
T PF04971_consen 32 QWAAIGVIGGIFF 44 (68)
T ss_pred cchhHHHHHHHHH
Confidence 4666555544443
No 130
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=24.65 E-value=55 Score=28.00 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhccc
Q 041178 706 LICLIGFKVLFQRRND 721 (725)
Q Consensus 706 ~~~~~~~~~~~~~~~~ 721 (725)
+.+++.++++|.||||
T Consensus 115 is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 115 ITCCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHHHhhheeeeccc
Confidence 3333444445555544
No 131
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=24.59 E-value=1e+02 Score=27.05 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=4.8
Q ss_pred HHHHHHHhhccc
Q 041178 710 IGFKVLFQRRND 721 (725)
Q Consensus 710 ~~~~~~~~~~~~ 721 (725)
+++..++++.|+
T Consensus 82 icvCmc~kn~rg 93 (155)
T PF10873_consen 82 ICVCMCMKNSRG 93 (155)
T ss_pred HHHhhhhhcCCC
Confidence 333344444443
No 132
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=24.33 E-value=51 Score=32.80 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=11.9
Q ss_pred cCccceEEee-hHHHHHHHHHHHHHHHHHH
Q 041178 687 ASRKKWVVVM-FSSLVMIILLICLIGFKVL 715 (725)
Q Consensus 687 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 715 (725)
.+.+.|.+++ ++..+++++++.+++++..
T Consensus 208 ~~~~~W~iv~g~~~G~~~L~ll~~lv~~~v 237 (278)
T PF06697_consen 208 KRSWWWKIVVGVVGGVVLLGLLSLLVAMLV 237 (278)
T ss_pred CcceeEEEEEEehHHHHHHHHHHHHHHhhh
Confidence 3444565333 3444443333333433333
No 133
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=24.05 E-value=12 Score=31.03 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.6
Q ss_pred eEEeehHHHHH
Q 041178 692 WVVVMFSSLVM 702 (725)
Q Consensus 692 ~~~~~~~~~~~ 702 (725)
.++++++++++
T Consensus 64 ili~lls~v~I 74 (101)
T PF06024_consen 64 ILISLLSFVCI 74 (101)
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 134
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=23.80 E-value=1.3e+02 Score=22.95 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.3
Q ss_pred HHHHHh
Q 041178 712 FKVLFQ 717 (725)
Q Consensus 712 ~~~~~~ 717 (725)
+|..|+
T Consensus 26 ~wi~~R 31 (72)
T PF13268_consen 26 IWILWR 31 (72)
T ss_pred HHHHHH
Confidence 333333
No 135
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=23.61 E-value=65 Score=33.77 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=9.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhh
Q 041178 695 VMFSSLVMIILLICLIGFKVLFQR 718 (725)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~ 718 (725)
+.+..+++++++++.+++++++++
T Consensus 301 i~v~~~~vli~vl~~~~~~~~~~~ 324 (361)
T PF12259_consen 301 IAVCGAIVLIIVLISLAWLYRTFR 324 (361)
T ss_pred EehhHHHHHHHHHHHHHhheeehH
Confidence 333333333333333444444333
No 136
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=23.18 E-value=1.2e+02 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=10.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhccc
Q 041178 696 MFSSLVMIILLICLIGFKVLFQRRND 721 (725)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (725)
++++.+++++-+++++|.++.+|+++
T Consensus 33 aVviPl~L~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 33 AVVIPLVLLLCILVLIYAIFQFKRKG 58 (74)
T ss_pred EEeHHHHHHHHHHHHHHHhheeeecC
Confidence 33333333333344444444444443
No 137
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=22.81 E-value=24 Score=29.34 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041178 699 SLVMIILLICLIGFKVL 715 (725)
Q Consensus 699 ~~~~~~~~~~~~~~~~~ 715 (725)
+.++++.+++++..|++
T Consensus 31 iL~VILgiLLliGCWYc 47 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYC 47 (118)
T ss_dssp -----------------
T ss_pred eHHHHHHHHHHHhheee
Confidence 33333333334444433
No 138
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.72 E-value=1.2e+02 Score=30.56 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=4.0
Q ss_pred CccceEEeeh
Q 041178 688 SRKKWVVVMF 697 (725)
Q Consensus 688 ~~~~~~~~~~ 697 (725)
+..+..+|+|
T Consensus 223 ~l~~G~VVlI 232 (281)
T PF12768_consen 223 KLSRGFVVLI 232 (281)
T ss_pred cccceEEEEE
Confidence 3334444443
No 139
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=22.21 E-value=68 Score=30.44 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 041178 699 SLVMIILLICLIGFKVLFQR 718 (725)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~ 718 (725)
++++.+++++++++++++|+
T Consensus 197 liVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 197 LIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33333334444444444443
No 140
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=21.74 E-value=1.7e+02 Score=20.22 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=5.3
Q ss_pred HHHHHHHhhcccc
Q 041178 710 IGFKVLFQRRNDS 722 (725)
Q Consensus 710 ~~~~~~~~~~~~~ 722 (725)
+++.++|-.|++|
T Consensus 17 ~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 17 ALAAFLWAVKSGQ 29 (45)
T ss_pred HHHHHHHHHccCC
Confidence 3333444444443
No 141
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.90 E-value=51 Score=36.01 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCCCCCEEECCCCCCCCCC--CccCcCCCCCCEEEccCCcCCCCCCccccC--CCCCCEEEcCCCcCCC
Q 041178 129 NLSKLQHLDLGNNQLTGVI--PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQ--LSLINELALCHNNLYG 193 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~ 193 (725)
+.+.+..++|++|++.... ..--..-|+|+.|+|++|...-..-.++.+ ...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3455555666666554220 000123456666777766211111112222 2346677777776653
No 142
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=20.72 E-value=1.6e+02 Score=20.94 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=5.4
Q ss_pred HHHHHHHhhcccc
Q 041178 710 IGFKVLFQRRNDS 722 (725)
Q Consensus 710 ~~~~~~~~~~~~~ 722 (725)
.++.++|-.|++|
T Consensus 18 ~l~~f~Wavk~GQ 30 (51)
T TIGR00847 18 GLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHccCC
Confidence 3333444444443
Done!