Query 041178
Match_columns 725
No_of_seqs 690 out of 4548
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.1E-92 3.1E-96 818.2 48.4 641 18-682 3-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.2E-72 1.1E-76 653.6 39.7 560 82-647 100-739 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-63 8.1E-68 574.0 47.4 571 82-653 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-62 5.8E-67 566.8 47.8 582 87-672 9-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.7E-58 9.2E-63 524.6 41.7 524 107-653 33-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.8E-58 1.7E-62 522.5 40.0 523 82-628 33-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-57 6.5E-62 534.6 39.4 551 86-671 8-582 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3E-57 1E-61 515.9 38.3 537 86-653 15-563 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-56 1.1E-60 507.6 35.3 519 82-628 32-562 (606)
10 4eco_A Uncharacterized protein 100.0 1.4E-57 4.6E-62 518.3 20.6 494 22-576 25-600 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-55 4E-60 519.4 37.2 527 70-627 13-563 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 2.5E-54 8.6E-59 498.6 29.6 497 21-552 263-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.9E-52 6.6E-57 473.0 31.1 521 109-657 9-540 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 9.9E-51 3.4E-55 459.0 35.5 498 107-629 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 7E-50 2.4E-54 449.7 29.7 489 137-657 11-519 (549)
16 4eco_A Uncharacterized protein 100.0 1E-50 3.4E-55 461.8 16.4 458 107-602 81-602 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 7.6E-49 2.6E-53 441.3 31.0 491 70-604 3-514 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-46 5.8E-51 430.1 40.7 550 70-652 21-584 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 1.8E-47 6.3E-52 441.4 27.2 464 107-599 323-863 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-47 5.8E-52 427.1 24.9 458 110-628 3-485 (520)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-47 5E-52 427.6 23.5 457 134-653 3-486 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 6E-44 2.1E-48 409.0 35.4 531 110-670 34-582 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.1E-44 3.1E-48 400.3 24.0 463 129-654 29-516 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-43 3.5E-48 399.9 23.7 463 106-628 30-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 2E-42 7E-47 358.5 18.8 292 23-334 2-302 (313)
26 3v47_A TOLL-like receptor 5B a 100.0 4.8E-41 1.6E-45 368.5 28.7 387 255-659 14-419 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.5E-41 8.7E-46 367.6 22.3 421 129-653 9-434 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 1.7E-40 5.8E-45 364.2 27.8 382 207-628 14-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 9.1E-40 3.1E-44 355.4 28.4 415 103-609 7-438 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 6.4E-38 2.2E-42 341.1 31.4 210 102-336 37-246 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.6E-38 1.9E-42 341.6 30.4 365 119-583 30-394 (457)
32 1o6v_A Internalin A; bacterial 100.0 3.3E-36 1.1E-40 330.4 29.7 346 249-649 44-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 1.4E-35 4.9E-40 325.3 33.8 347 128-529 43-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 3.9E-37 1.3E-41 339.3 21.2 322 302-650 14-335 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 1.3E-35 4.3E-40 327.2 26.7 320 255-601 15-334 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 1.4E-34 4.8E-39 310.1 28.4 290 104-408 42-331 (390)
37 3oja_B Anopheles plasmodium-re 100.0 6.2E-34 2.1E-38 321.8 30.1 311 104-432 48-358 (597)
38 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-35 2.5E-39 301.7 17.1 255 420-678 51-312 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 5E-34 1.7E-38 305.8 23.4 332 298-671 44-377 (390)
40 3oja_B Anopheles plasmodium-re 100.0 4.1E-34 1.4E-38 323.3 22.8 333 298-672 50-384 (597)
41 4fcg_A Uncharacterized protein 100.0 1E-34 3.4E-39 302.4 13.6 284 22-336 22-314 (328)
42 4fmz_A Internalin; leucine ric 100.0 8.7E-33 3E-37 291.4 27.1 306 296-648 41-346 (347)
43 4fmz_A Internalin; leucine ric 100.0 2.6E-32 8.9E-37 287.7 28.3 307 271-624 40-346 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-31 1.9E-35 275.5 25.8 226 107-364 54-281 (332)
45 1xku_A Decorin; proteoglycan, 100.0 1.4E-30 4.6E-35 272.4 28.2 232 107-367 52-283 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-31 2.3E-35 274.9 25.8 267 372-646 55-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 2.8E-30 9.5E-35 270.0 29.0 295 132-454 32-330 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 1E-34 3.5E-39 318.8 -7.7 379 251-648 3-440 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-34 8.5E-39 315.7 -6.5 384 227-630 3-446 (461)
50 2z66_A Variable lymphocyte rec 100.0 2.6E-29 9E-34 259.7 18.4 282 71-368 7-295 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 2.3E-29 8E-34 265.6 16.3 286 68-387 27-317 (353)
52 3ogk_B Coronatine-insensitive 100.0 6.2E-32 2.1E-36 306.5 -4.2 427 196-645 66-548 (592)
53 4fcg_A Uncharacterized protein 100.0 1E-28 3.5E-33 257.0 18.7 227 129-360 79-314 (328)
54 2z80_A TOLL-like receptor 2, v 100.0 3.2E-29 1.1E-33 264.5 14.2 257 396-653 53-319 (353)
55 3ogk_B Coronatine-insensitive 100.0 2.8E-31 9.7E-36 301.0 -2.4 423 173-621 67-548 (592)
56 2z66_A Variable lymphocyte rec 100.0 1.4E-27 4.9E-32 246.6 21.8 261 348-609 29-296 (306)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.9E-32 244.6 19.7 255 85-344 14-269 (285)
58 3zyi_A Leucine-rich repeat-con 100.0 3.2E-27 1.1E-31 257.8 24.0 227 107-335 75-302 (452)
59 3zyi_A Leucine-rich repeat-con 100.0 3.7E-27 1.3E-31 257.3 23.9 231 419-651 75-306 (452)
60 3zyj_A Leucine-rich repeat-con 100.0 4.6E-27 1.6E-31 255.6 22.9 230 420-651 65-295 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 7E-27 2.4E-31 238.8 20.4 235 373-608 34-269 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 1.5E-26 5E-31 251.7 24.1 227 107-335 64-291 (440)
63 1wwl_A Monocyte differentiatio 99.9 4.7E-29 1.6E-33 258.2 3.1 249 391-649 39-310 (312)
64 1wwl_A Monocyte differentiatio 99.9 5.3E-29 1.8E-33 257.7 3.3 247 105-361 41-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-28 8.4E-33 253.4 5.8 265 375-653 14-281 (317)
66 2o6q_A Variable lymphocyte rec 99.9 1.1E-25 3.6E-30 227.8 23.1 218 68-313 2-219 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-27 6.3E-32 246.7 9.1 262 329-604 16-280 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4E-30 251.5 22.9 278 68-390 19-303 (622)
69 3oja_A Leucine-rich immune mol 99.9 7.4E-27 2.5E-31 256.3 10.9 236 394-643 33-270 (487)
70 2p1m_B Transport inhibitor res 99.9 4E-29 1.4E-33 283.5 -9.3 409 225-654 103-550 (594)
71 2p1m_B Transport inhibitor res 99.9 1E-28 3.5E-33 280.2 -7.6 377 248-648 102-519 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 5E-25 1.7E-29 223.8 19.4 214 443-657 28-246 (276)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-23 3.7E-28 235.6 29.9 176 107-313 40-215 (622)
74 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5.1E-30 245.9 12.7 236 346-595 33-270 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 4.6E-24 1.6E-28 216.7 19.2 206 107-313 28-238 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.8E-28 213.0 20.5 206 445-653 18-223 (270)
77 3rfs_A Internalin B, repeat mo 99.9 2.1E-23 7.1E-28 211.1 19.4 209 128-347 38-246 (272)
78 3rfs_A Internalin B, repeat mo 99.9 2.4E-23 8.1E-28 210.7 18.8 211 103-324 37-247 (272)
79 1p9a_G Platelet glycoprotein I 99.9 5.8E-23 2E-27 209.5 18.3 181 467-651 31-211 (290)
80 3m19_A Variable lymphocyte rec 99.9 8.3E-23 2.8E-27 204.1 18.9 191 68-264 2-192 (251)
81 1p9a_G Platelet glycoprotein I 99.9 1.9E-22 6.6E-27 205.6 21.5 205 102-313 5-209 (290)
82 2ast_B S-phase kinase-associat 99.9 1.7E-25 5.9E-30 234.4 -1.4 267 68-344 34-314 (336)
83 3goz_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 229.3 5.4 223 376-598 3-264 (362)
84 2ca6_A RAN GTPase-activating p 99.9 2.2E-24 7.6E-29 230.4 3.9 245 387-651 24-319 (386)
85 4glp_A Monocyte differentiatio 99.9 1.3E-22 4.5E-27 209.6 16.4 203 107-313 64-286 (310)
86 4glp_A Monocyte differentiatio 99.9 2.2E-23 7.6E-28 215.3 10.4 202 442-649 90-308 (310)
87 3goz_A Leucine-rich repeat-con 99.9 7.1E-24 2.4E-28 224.1 6.0 222 353-574 4-264 (362)
88 2ca6_A RAN GTPase-activating p 99.9 4.4E-24 1.5E-28 228.0 2.9 246 363-628 24-320 (386)
89 2xwt_C Thyrotropin receptor; s 99.9 4.5E-22 1.5E-26 197.3 17.0 197 107-309 31-236 (239)
90 3m19_A Variable lymphocyte rec 99.9 5.8E-22 2E-26 198.0 17.1 181 469-652 16-196 (251)
91 2ast_B S-phase kinase-associat 99.9 4.1E-23 1.4E-27 216.2 8.2 197 349-549 49-257 (336)
92 2xwt_C Thyrotropin receptor; s 99.9 4.1E-22 1.4E-26 197.6 14.5 197 444-646 32-237 (239)
93 2o6s_A Variable lymphocyte rec 99.9 2.4E-21 8.1E-26 187.6 17.7 185 70-276 6-190 (208)
94 1h6u_A Internalin H; cell adhe 99.9 3.2E-21 1.1E-25 198.5 15.0 193 416-624 38-230 (308)
95 1h6u_A Internalin H; cell adhe 99.9 4.1E-21 1.4E-25 197.8 15.2 194 104-313 38-231 (308)
96 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4.1E-24 190.6 19.4 239 111-380 13-255 (350)
97 3cvr_A Invasion plasmid antige 99.8 3.8E-20 1.3E-24 204.4 15.9 204 72-322 49-253 (571)
98 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 175.2 17.7 84 132-215 29-112 (208)
99 4ay9_X Follicle-stimulating ho 99.8 8.3E-20 2.8E-24 191.8 16.8 203 71-289 9-216 (350)
100 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5E-24 199.7 16.6 188 108-347 60-254 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 7E-24 175.2 13.4 157 494-653 14-171 (220)
102 3e6j_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 171.9 18.1 159 68-242 16-174 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 3.7E-19 1.3E-23 173.4 12.7 156 494-652 14-169 (220)
104 4b8c_D Glucose-repressible alc 99.8 2.1E-20 7.1E-25 214.4 4.3 256 25-311 130-403 (727)
105 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 170.8 13.4 157 493-653 21-177 (229)
106 2xot_A Amphoterin-induced prot 99.8 4.7E-19 1.6E-23 186.8 10.6 158 492-649 40-203 (361)
107 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.6E-23 175.7 14.2 149 488-648 65-213 (291)
108 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.2E-23 175.9 13.9 170 130-313 45-214 (291)
109 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.5E-23 192.1 15.4 171 104-288 40-210 (605)
110 1m9s_A Internalin B; cell inva 99.8 5.2E-18 1.8E-22 189.5 15.8 190 109-314 23-212 (605)
111 2v9t_B SLIT homolog 2 protein 99.8 1.2E-17 4.1E-22 162.7 16.4 128 110-240 14-141 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-17 4.2E-22 162.6 16.0 103 111-216 15-118 (220)
113 4ezg_A Putative uncharacterize 99.7 3.7E-18 1.3E-22 163.4 11.9 156 487-649 40-195 (197)
114 2xot_A Amphoterin-induced prot 99.7 1.6E-17 5.5E-22 175.1 14.6 128 134-264 21-149 (361)
115 1w8a_A SLIT protein; signaling 99.7 5.3E-18 1.8E-22 161.5 9.3 153 518-673 11-167 (192)
116 4b8c_D Glucose-repressible alc 99.7 4.1E-18 1.4E-22 195.3 8.8 193 449-652 207-408 (727)
117 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.6E-22 160.2 10.1 153 128-288 41-194 (197)
118 1dce_A Protein (RAB geranylger 99.7 2.2E-20 7.6E-25 207.5 -10.1 106 517-627 443-549 (567)
119 1xeu_A Internalin C; cellular 99.7 1E-17 3.5E-22 168.0 9.1 169 106-289 18-186 (263)
120 1xeu_A Internalin C; cellular 99.7 2.6E-17 8.7E-22 165.1 9.2 167 443-624 19-185 (263)
121 1dce_A Protein (RAB geranylger 99.7 5.7E-19 1.9E-23 196.2 -4.4 192 440-654 346-552 (567)
122 3sb4_A Hypothetical leucine ri 99.7 1.8E-17 6.1E-22 172.4 6.5 218 418-641 100-327 (329)
123 3sb4_A Hypothetical leucine ri 99.7 1.4E-17 4.8E-22 173.3 5.3 222 394-618 100-328 (329)
124 2ell_A Acidic leucine-rich nuc 99.7 2.8E-16 9.4E-21 146.2 10.5 134 514-649 23-161 (168)
125 1w8a_A SLIT protein; signaling 99.6 9.9E-16 3.4E-20 145.6 14.1 108 108-215 30-138 (192)
126 2je0_A Acidic leucine-rich nuc 99.6 1.8E-16 6.1E-21 144.2 8.4 128 515-644 17-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.6 4.1E-16 1.4E-20 145.0 10.0 133 106-240 23-160 (168)
128 2wfh_A SLIT homolog 2 protein 99.6 7.6E-16 2.6E-20 146.4 11.8 131 518-652 13-143 (193)
129 4fdw_A Leucine rich hypothetic 99.6 4.1E-14 1.4E-18 150.1 24.2 240 107-359 113-357 (401)
130 2o6r_A Variable lymphocyte rec 99.6 1.2E-15 4.2E-20 143.1 11.0 134 517-653 9-142 (177)
131 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 142.1 6.8 127 106-234 16-147 (149)
132 4fs7_A Uncharacterized protein 99.6 3E-14 1E-18 152.0 22.6 237 221-495 156-392 (394)
133 2o6r_A Variable lymphocyte rec 99.6 9.2E-15 3.1E-19 137.1 14.8 132 71-217 7-138 (177)
134 4fs7_A Uncharacterized protein 99.6 7.2E-14 2.5E-18 149.0 23.7 331 147-544 63-393 (394)
135 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.8E-18 146.8 23.9 271 129-431 111-382 (401)
136 2wfh_A SLIT homolog 2 protein 99.6 2.9E-14 1E-18 135.4 14.8 127 110-240 13-139 (193)
137 1ds9_A Outer arm dynein; leuci 99.6 7.6E-17 2.6E-21 154.4 -3.2 152 490-648 17-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.3E-15 2.5E-19 137.6 7.8 132 512-648 16-153 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 2.7E-16 9.1E-21 150.6 -4.6 132 486-624 43-185 (198)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7.3E-19 134.4 7.6 132 488-624 16-153 (176)
141 3g39_A Variable lymphocyte rec 99.5 8.9E-14 3E-18 129.1 9.6 110 541-653 11-120 (170)
142 2r9u_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 125.9 9.6 108 542-652 15-122 (174)
143 3g39_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 118.5 13.4 103 110-215 12-114 (170)
144 4gt6_A Cell surface protein; l 99.4 1.4E-10 4.7E-15 123.5 26.5 331 172-551 56-390 (394)
145 2r9u_A Variable lymphocyte rec 99.4 5.4E-12 1.9E-16 117.4 13.5 103 110-215 15-117 (174)
146 4gt6_A Cell surface protein; l 99.4 7.6E-11 2.6E-15 125.5 24.0 133 460-599 258-390 (394)
147 3un9_A NLR family member X1; l 99.3 1.8E-13 6E-18 143.9 -0.3 157 492-648 73-252 (372)
148 3un9_A NLR family member X1; l 99.3 2.1E-13 7.1E-18 143.3 -2.0 166 443-631 72-259 (372)
149 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.8E-16 128.9 9.4 103 519-624 12-116 (347)
150 2ifg_A High affinity nerve gro 99.2 7.5E-11 2.6E-15 123.3 12.5 108 71-192 8-116 (347)
151 4h09_A Hypothetical leucine ri 99.1 6.7E-09 2.3E-13 109.9 24.7 145 415-564 213-357 (379)
152 4h09_A Hypothetical leucine ri 99.1 8.8E-09 3E-13 108.9 25.4 169 415-589 190-358 (379)
153 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.2E-14 110.9 5.2 84 561-646 250-341 (362)
154 2ra8_A Uncharacterized protein 98.8 2.6E-09 9E-14 111.0 4.8 140 506-648 163-320 (362)
155 3rw6_A Nuclear RNA export fact 98.7 2.2E-11 7.5E-16 119.9 -12.5 22 69-90 76-98 (267)
156 3rw6_A Nuclear RNA export fact 98.5 4E-08 1.4E-12 96.7 3.6 105 535-641 137-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.5 3.1E-08 1.1E-12 92.8 2.7 87 561-647 63-163 (185)
158 1io0_A Tropomodulin; LRR prote 98.4 3.2E-08 1.1E-12 92.7 1.1 88 537-624 63-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 4.2E-06 1.4E-10 76.1 2.4 84 539-622 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 4.8E-06 1.6E-10 75.7 1.9 84 491-574 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0002 6.9E-09 66.3 3.2 88 559-646 66-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00026 8.9E-09 65.6 1.3 63 490-552 40-111 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0015 5.2E-08 56.4 5.6 58 591-650 12-70 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.0063 2.1E-07 52.5 4.6 56 567-624 12-68 (130)
165 2ks1_B Epidermal growth factor 95.8 0.01 3.5E-07 39.2 3.8 19 707-725 26-44 (44)
166 2l2t_A Receptor tyrosine-prote 95.7 0.0081 2.8E-07 39.5 3.0 19 707-725 25-43 (44)
167 2jwa_A Receptor tyrosine-prote 93.3 0.081 2.8E-06 34.7 3.4 17 709-725 28-44 (44)
168 2l8s_A Integrin alpha-1; trans 66.6 4.5 0.00015 27.8 2.8 24 691-714 9-32 (54)
169 2ks1_B Epidermal growth factor 64.1 7.3 0.00025 25.7 3.4 19 706-724 22-40 (44)
170 2l2t_A Receptor tyrosine-prote 62.2 10 0.00035 24.9 3.8 18 704-721 25-42 (44)
171 2klu_A T-cell surface glycopro 62.0 5.5 0.00019 28.4 2.6 9 716-724 34-42 (70)
172 2l9u_A Receptor tyrosine-prote 58.4 9.5 0.00032 23.1 2.8 20 701-720 14-33 (40)
173 2knc_A Integrin alpha-IIB; tra 54.1 8.1 0.00028 26.6 2.4 24 691-714 12-35 (54)
174 2lz0_A Uncharacterized protein 52.8 35 0.0012 27.1 6.5 36 150-186 15-50 (100)
175 2lz0_A Uncharacterized protein 50.2 47 0.0016 26.3 6.9 45 167-212 8-52 (100)
176 2l6w_A Beta-type platelet-deri 51.7 4.3 0.00015 25.5 0.0 9 710-718 26-34 (39)
177 2jwa_A Receptor tyrosine-prote 40.0 22 0.00076 23.3 2.6 22 701-722 23-44 (44)
178 2klu_A T-cell surface glycopro 28.6 75 0.0026 22.7 4.0 20 706-725 20-40 (70)
179 3ox7_P MH027; urokinase-type p 21.8 30 0.001 18.1 0.7 10 68-77 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.1e-92 Score=818.16 Aligned_cols=641 Identities=31% Similarity=0.484 Sum_probs=544.3
Q ss_pred HhhccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccc
Q 041178 18 SHSIASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGT 97 (725)
Q Consensus 18 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~ 97 (725)
+.+++++.++|++||++||+++.+ +. .+++|+ .+ +|||+|.||+|+ .+||++++|++.++.|.
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~~-~~-~l~~W~---~~-----------~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~ 65 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLPD-KN-LLPDWS---SN-----------KNPCTFDGVTCR-DDKVTSIDLSSKPLNVG 65 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCSC-TT-SSTTCC---TT-----------SCGGGSTTEEEE-TTEEEEEECTTSCCCEE
T ss_pred cCccccCCHHHHHHHHHHHhhCCC-cc-cccCCC---CC-----------CCCcCCcceEEC-CCcEEEEECCCCCcCCc
Confidence 445566788999999999999974 44 889995 33 689999999998 79999999999999886
Q ss_pred ---cCC----------------------cccCCCCCCcEEECCCCCCCccCch--hccCCCCCCEEECCCCCCCCCCCcc
Q 041178 98 ---LQE----------------------FAFSSFPHLVHLNLSFNIVFGTIPP--QVGNLSKLQHLDLGNNQLTGVIPPE 150 (725)
Q Consensus 98 ---~~~----------------------~~~~~l~~L~~L~Ls~n~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~ 150 (725)
+++ ..++.+++|++|+|++|.+.|.+|. .++++++|++|++++|.+.+.+|..
T Consensus 66 ~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 145 (768)
T 3rgz_A 66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145 (768)
T ss_dssp HHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred cCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence 432 3678889999999999999998888 8999999999999999998888877
Q ss_pred C-cCCCCCCEEEccCCcCCCCCCcc---ccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCC
Q 041178 151 I-GHLNQLRSLYFDVNQLHGPIPQE---IGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL 226 (725)
Q Consensus 151 ~-~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 226 (725)
+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..|. ..+++|++|++++|.+.+.+|. ++++
T Consensus 146 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l 222 (768)
T 3rgz_A 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDC 222 (768)
T ss_dssp SCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTC
T ss_pred HhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccC
Confidence 6 78999999999999998887776 78888899999988888876553 7888999999999998887777 8889
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCC-CCccEEE
Q 041178 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNL-SSLTVMS 305 (725)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ 305 (725)
++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|+
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 99999999999998888888889999999999999888877764 78888999999998888888888765 8899999
Q ss_pred ccCCcCcccCcccccCCCcccccccccccccccCCcc-CcCCCCCCEEEccCCcCccCCcccccCCC-CCCEEECcCccc
Q 041178 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSS-IGNLSNLRLLYLYNNGFYGFVPEEIGYLK-SIFELELCTNRL 383 (725)
Q Consensus 306 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l 383 (725)
+++|.+++.+|..++.+++|++|++++|++.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence 9999888888888888888999999988888888765 88888888888888888888888877776 788888888888
Q ss_pred cccccccccC--CCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCc
Q 041178 384 RGGIPHSIGN--LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF 461 (725)
Q Consensus 384 ~~~~~~~~~~--l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 461 (725)
++.+|..+.. +++|+.|++++|.+++.+|..+.++++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|.
T Consensus 381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 460 (768)
T 3rgz_A 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460 (768)
T ss_dssp EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence 8777777666 67788888888888777777788888888888888888877777777788888888888888877777
Q ss_pred cccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccc
Q 041178 462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541 (725)
Q Consensus 462 ~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 541 (725)
.+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+..+++|
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 77778888888888888887777777788888888888888887788878888888888888888877778778788888
Q ss_pred ccccccccccccccccc---------------------------------------------------------------
Q 041178 542 QYLDLSANKLRSWIPKS--------------------------------------------------------------- 558 (725)
Q Consensus 542 ~~L~Ls~n~l~~~~~~~--------------------------------------------------------------- 558 (725)
++|++++|+++|.+|..
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 88888887777655543
Q ss_pred -------cccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccc
Q 041178 559 -------IGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCF 631 (725)
Q Consensus 559 -------~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 631 (725)
+..+++|+.||+++|+++|.+|.+++++++|+.|+|++|.++|.+|..++++++|++|||++|+++|.+|..|
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEeCcCCCccccCCCCCCcCce---eccCCCCCCCCCCCCCCCCCCC
Q 041178 632 EGMHNLSHIDISYNELQGPIPNSTTFKDA---RMEGNKGLCGNIKGLPSCKAFT 682 (725)
Q Consensus 632 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~gn~~lc~~~~~~~~c~~~~ 682 (725)
..+++|++||+++|+++|.||..++|.++ +|.||+++||.|. +.|....
T Consensus 701 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~~ 752 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPSN 752 (768)
T ss_dssp GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSCC
T ss_pred hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCCc
Confidence 99999999999999999999999998887 7999999999885 4787543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-72 Score=653.61 Aligned_cols=560 Identities=31% Similarity=0.425 Sum_probs=511.2
Q ss_pred CCEEEEEcCCCCCccccCCc-ccCCCCCCcEEECCCCCCCccCchhc-cCCCCCCEEECCCCCCCCCCCcc---CcCCCC
Q 041178 82 ERIISINLSSMGLNGTLQEF-AFSSFPHLVHLNLSFNIVFGTIPPQV-GNLSKLQHLDLGNNQLTGVIPPE---IGHLNQ 156 (725)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~ 156 (725)
.+++.++|+++.+.|.++.. .++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.+++..|.. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 57899999999999988731 78999999999999999999888776 89999999999999999888877 889999
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccC
Q 041178 157 LRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSK 236 (725)
Q Consensus 157 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 236 (725)
|++|++++|.+++..|. .++++|++|++++|.+.+.+|. ++++++|++|++++|.+.+.+|..++.+++|++|++++
T Consensus 180 L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 99999999999877664 7899999999999999988777 99999999999999999999999999999999999999
Q ss_pred CcCcccCCccccCCCCCCceeeccccccccCCccccCC-CCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC
Q 041178 237 NQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNL-ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315 (725)
Q Consensus 237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 315 (725)
|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++|++++|.+++.+
T Consensus 257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 9999887765 88999999999999999999888775 99999999999999999999999999999999999998777
Q ss_pred ccc-ccCCCcccccccccccccccCCccCcCCC-CCCEEEccCCcCccCCcccccC--CCCCCEEECcCccccccccccc
Q 041178 316 PPI-LGNLKSLSALGLHINQLNGVIPSSIGNLS-NLRLLYLYNNGFYGFVPEEIGY--LKSIFELELCTNRLRGGIPHSI 391 (725)
Q Consensus 316 ~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~ 391 (725)
|.. +..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 765 88999999999999999999999888887 8999999999999888888776 7889999999999999999999
Q ss_pred cCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcE
Q 041178 392 GNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGT 471 (725)
Q Consensus 392 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 471 (725)
..+++|+.|++++|.+++.+|..+.++++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccc----------------
Q 041178 472 FIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFEL---------------- 535 (725)
Q Consensus 472 L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---------------- 535 (725)
|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999988777543
Q ss_pred ------------------------------------------------------cCcccccccccccccccccccccccc
Q 041178 536 ------------------------------------------------------GSLTELQYLDLSANKLRSWIPKSIGN 561 (725)
Q Consensus 536 ------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~ 561 (725)
..+++|++|||++|+++|.+|..+++
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 33577899999999999999999999
Q ss_pred CCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEe
Q 041178 562 LLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641 (725)
Q Consensus 562 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 641 (725)
+++|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..++++++|++||+++|+++|.||.. ..+.++....
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~ 733 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAK 733 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999975 3455566667
Q ss_pred CcCCCc
Q 041178 642 ISYNEL 647 (725)
Q Consensus 642 ls~N~l 647 (725)
+.+|+-
T Consensus 734 ~~gN~~ 739 (768)
T 3rgz_A 734 FLNNPG 739 (768)
T ss_dssp GCSCTE
T ss_pred hcCCch
Confidence 778873
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-63 Score=573.96 Aligned_cols=571 Identities=23% Similarity=0.252 Sum_probs=478.5
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178 82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161 (725)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 161 (725)
.+++.++++++.+.+..+ ..|..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 578888998888876544 5788888999999998888888888888899999999999988865555788899999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccC--CCCCCCEEEccCCcC
Q 041178 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLG--NLKSISTLDLSKNQL 239 (725)
Q Consensus 162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l 239 (725)
+++|.+++..|..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999988877778888889999999999988888888888889999999999888777666543 558889999999988
Q ss_pred cccCCccccCCCCCCceeeccccccccCCccc---cCCCCCCEEEccCCccccccCCCCCCCCC--ccEEEccCCcCccc
Q 041178 240 SGSIPFSLGNLSNLGILYLYSNSLSGPIPSVI---GNLESLLQLDLSENQLSGSIPISLGNLSS--LTVMSLFSNSLSSF 314 (725)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~ 314 (725)
++..|..+..+++|+.+++.++.+.+.....+ ...++|++|++++|.+++..|..+.+++. |++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 88888888888888888888887654322211 13478999999999999888888887755 99999999999988
Q ss_pred CcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCcc-----CCcc----cccCCCCCCEEECcCccccc
Q 041178 315 IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG-----FVPE----EIGYLKSIFELELCTNRLRG 385 (725)
Q Consensus 315 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~~L~~L~l~~n~l~~ 385 (725)
.|..++.+++|++|++++|++.+..|..+..+++|+.|++++|...+ .+|. .+..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 88889999999999999999998888899999999999998876543 2332 67788899999999999998
Q ss_pred cccccccCCCCCcEEEcCCCcCCCCC--CccccC--CCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccC-
Q 041178 386 GIPHSIGNLTELVLVNMCENHLSGPI--PKSLRN--LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS- 460 (725)
Q Consensus 386 ~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~- 460 (725)
..+..+..+++|+.|++++|.+.... +..+.. .++|+.|++++|++++..+..+..+++|++|++++|++.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 88888999999999999998764432 223333 2589999999999999888899999999999999999988766
Q ss_pred ccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCccc--ccCchhhhcCCCCCeEeccCceecCCCCccccCc
Q 041178 461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIV--GEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSL 538 (725)
Q Consensus 461 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 538 (725)
..+.++++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..+..+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 57888999999999999998888888899999999999999886 5778889999999999999999998888888999
Q ss_pred cccccccccccccccccc--------cccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCC
Q 041178 539 TELQYLDLSANKLRSWIP--------KSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNM 610 (725)
Q Consensus 539 ~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 610 (725)
++|++|++++|++++..+ ..+.++++|++|++++|+++...+..|.++++|++|+|++|.+++..+..|.++
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 999999999999887422 237888999999999999985555578999999999999999987777778899
Q ss_pred CCCCEEeCCCCccccccCcccc-CCCCCCEEeCcCCCccccCCC
Q 041178 611 KSLEKLNLCHNNLSGFIPRCFE-GMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 611 ~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~ 653 (725)
++|+.|++++|++++..|..|. .+++|+++++++|++.+.++.
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999988888777 788999999999999988775
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-62 Score=566.77 Aligned_cols=582 Identities=23% Similarity=0.215 Sum_probs=511.0
Q ss_pred EEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCc
Q 041178 87 INLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQ 166 (725)
Q Consensus 87 l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 166 (725)
+++++.++.. +| ..+. +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.
T Consensus 9 ~~cs~~~L~~-ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQ-VP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSS-CC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCccc-cc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4445555543 33 1222 789999999999999888889999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCcc
Q 041178 167 LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFS 246 (725)
Q Consensus 167 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 246 (725)
+++..+..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 99666668999999999999999999888889999999999999999999998999999999999999999999877766
Q ss_pred cc--CCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCC---CCCCCccEEEccCCcCcccCcccccC
Q 041178 247 LG--NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISL---GNLSSLTVMSLFSNSLSSFIPPILGN 321 (725)
Q Consensus 247 l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~ 321 (725)
+. .+++|++|++++|.+++..|..+..+.+|+.+++.++.+.+.....+ ...++|+.|++++|.+++..|.++..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 54 56899999999999999999999999999999999988754322111 02478999999999999999999988
Q ss_pred CCc--ccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccc-----cccc----c
Q 041178 322 LKS--LSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG-----GIPH----S 390 (725)
Q Consensus 322 l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~----~ 390 (725)
++. |+.|++++|++.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+ .+|. .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 865 9999999999999888999999999999999999999999999999999999999876554 2332 6
Q ss_pred ccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccc--cccccC--CCCCCEEeCcCCccccccCccccCC
Q 041178 391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV--YEAFGY--HPNLTFLDLSQNNFYGEISFNWRNF 466 (725)
Q Consensus 391 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~~ 466 (725)
+..+++|+.|++++|.+++..+..+.++++|+.|++++|.+.... ...|.. .++|+.|++++|++++..+..+..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 888999999999999999999999999999999999999865332 233332 3689999999999999999999999
Q ss_pred CCCcEEECCCCcccccCC-ccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceec--CCCCccccCcccccc
Q 041178 467 PKLGTFIVSMNNISGSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS--GGMPFELGSLTELQY 543 (725)
Q Consensus 467 ~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~ 543 (725)
++|+.|++++|.+.+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 999999999999998776 67899999999999999999999999999999999999999987 578899999999999
Q ss_pred ccccccccccccccccccCCCCCEEeCCCCcCcccCh--------hhhhcccccccccccccccCccCcccccCCCCCCE
Q 041178 544 LDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIP--------IEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615 (725)
Q Consensus 544 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 615 (725)
|++++|++++..+..|.++++|++|++++|++++..+ ..+.++++|++|+|++|.++...+..|.++++|++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 9999999999888889999999999999999986422 23788999999999999998655567999999999
Q ss_pred EeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCC-----CCcCceeccCCCCCCCCC
Q 041178 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS-----TTFKDARMEGNKGLCGNI 672 (725)
Q Consensus 616 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-----~~~~~~~~~gn~~lc~~~ 672 (725)
|++++|++++..+..|..+++|++|++++|++++..|.. ..+..+.+.|||+.|...
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999999888888899999999999999999877642 455666899999999643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-58 Score=524.60 Aligned_cols=524 Identities=19% Similarity=0.207 Sum_probs=394.2
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 37899999999998888888899999999999999888888888888999999999999888888888888888888888
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCC--ceeecccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG--ILYLYSNSLS 264 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~ 264 (725)
++|.+++..|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88888876667788888888888888888764433444588888888888888877677777777777 6777777777
Q ss_pred ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCc
Q 041178 265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG 344 (725)
Q Consensus 265 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 344 (725)
+..|..+.. .+|++|++++|.. ++..+..+.+++...+.-..+. .+...++....+. .+.
T Consensus 193 ~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~-----------~~~~~~i~~~~~~-----~l~ 252 (606)
T 3t6q_A 193 GIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE-----------DMDDEDISPAVFE-----GLC 252 (606)
T ss_dssp EECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT-----------TSCCCCCCGGGGG-----GGG
T ss_pred ccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhc-----------cccccccChhHhc-----hhh
Confidence 666655443 4677777776652 1222222333322222211111 1111111111111 111
Q ss_pred CCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEE
Q 041178 345 NLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERV 424 (725)
Q Consensus 345 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 424 (725)
. .+|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+.++++|+.|
T Consensus 253 ~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 E-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp G-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred c-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 1 14666666666666655555666666666666666666 556666666667777777776666666666667777777
Q ss_pred ECcCccccccccc-cccCCCCCCEEeCcCCcccccc--CccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCC
Q 041178 425 RFNQNNLSGKVYE-AFGYHPNLTFLDLSQNNFYGEI--SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSN 501 (725)
Q Consensus 425 ~l~~n~l~~~~~~-~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n 501 (725)
++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 7777776655443 3667777777777777777665 666777888888888888888777778888888888888888
Q ss_pred cccccCch-hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccc---cccccccCCCCCEEeCCCCcCcc
Q 041178 502 HIVGEIPV-QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSW---IPKSIGNLLKLRYLNLSNNQFIQ 577 (725)
Q Consensus 502 ~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~ 577 (725)
++.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 88776654 478888899999999999888888888899999999999998763 23568899999999999999999
Q ss_pred cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178 578 KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 578 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
..|..++.+++|++|+|++|++++.+|..+.++++| +|++++|++++.+|..|..+++|+++++++|++.+.++.
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999999999999999 999999999999999899999999999999999987764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-58 Score=522.48 Aligned_cols=523 Identities=17% Similarity=0.159 Sum_probs=409.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178 82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161 (725)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 161 (725)
.+++.++++++.+.+..+ ..|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 478999999999987665 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCC--EEEccCCcC
Q 041178 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS--TLDLSKNQL 239 (725)
Q Consensus 162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l 239 (725)
+++|.+++..|..++++++|++|++++|.+.+..++.+..+++|++|++++|.+.+..|..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999987788899999999999999999985545566699999999999999988888999999999 999999999
Q ss_pred cccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccc
Q 041178 240 SGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPIL 319 (725)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 319 (725)
++..|..+.. .+|++|++++|.. ++..+..+.+++...+....+.+ +...++....+ ..+
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~-----~~l 251 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFED-----------MDDEDISPAVF-----EGL 251 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGG-----GGG
T ss_pred CccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhcc-----------ccccccChhHh-----chh
Confidence 9877766654 6899999998862 34445555555444443322221 11111111111 111
Q ss_pred cCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcE
Q 041178 320 GNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVL 399 (725)
Q Consensus 320 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 399 (725)
.. .+|+.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 252 ~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 252 CE-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GG-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hc-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 11 15566666666666555555666666666666666665 45556666666666666666666666666666777777
Q ss_pred EEcCCCcCCCCCCc-cccCCCCCcEEECcCccccccc--cccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCC
Q 041178 400 VNMCENHLSGPIPK-SLRNLTSLERVRFNQNNLSGKV--YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM 476 (725)
Q Consensus 400 L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~ 476 (725)
|++++|.+.+.+|. .+..+++|+.|++++|.+++.. +..+..+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 77777776655544 3667777777777777777665 66677778888888888888777777788888888888888
Q ss_pred CcccccCCc-cccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCC---CCccccCccccccccccccccc
Q 041178 477 NNISGSIPL-EIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG---MPFELGSLTELQYLDLSANKLR 552 (725)
Q Consensus 477 n~~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~ 552 (725)
|++.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|++|++++|+++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 888776554 377888888888888888888888888888888888888888762 3356888899999999999999
Q ss_pred cccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccC
Q 041178 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 553 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 628 (725)
+..|..|..+++|++|++++|++++..|..+.+++.| .|++++|.+++.+|..++.+++|+.|++++|++.+..+
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8888889999999999999999999889999999999 99999999988888888889999999999999876544
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-57 Score=534.63 Aligned_cols=551 Identities=22% Similarity=0.218 Sum_probs=445.0
Q ss_pred EEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC-CccCcCCCCCCEEEccC
Q 041178 86 SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI-PPEIGHLNQLRSLYFDV 164 (725)
Q Consensus 86 ~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~ 164 (725)
.++.++++++.. | . -.+++++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|+++++|++|+|++
T Consensus 8 ~~dcs~~~L~~v-P--~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQV-P--Q--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSCC-C--S--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCCC-C--C--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 345566666543 3 2 4579999999999999999999999999999999999766666 78899999999999999
Q ss_pred CcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCC--cCCCCCCcEEEccCCcCCccCc-cccCCCCCCCEEEccCCcCcc
Q 041178 165 NQLHGPIPQEIGQLSLINELALCHNNLYGPIPPS--LGNLSNLANFYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLSG 241 (725)
Q Consensus 165 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~ 241 (725)
|.+++..|..|+++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999999877665 8999999999999999987655 578999999999999999998
Q ss_pred cCCccccCC--CCCCceeeccccccccCCccccCCCC------CCEEEccCCccccccCCCCCC---CCCccEEEccCCc
Q 041178 242 SIPFSLGNL--SNLGILYLYSNSLSGPIPSVIGNLES------LLQLDLSENQLSGSIPISLGN---LSSLTVMSLFSNS 310 (725)
Q Consensus 242 ~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n~ 310 (725)
..+..+..+ ++|+.|++++|.+.+..|..++.+.+ |++|++++|.+++..|..+.. ..+++.+.+..+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888887 89999999999999888887776665 889999998887777665543 2567777776443
Q ss_pred CcccCcccccCCCcccccccccccccccCCccCcCC--CCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccccccc
Q 041178 311 LSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL--SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIP 388 (725)
Q Consensus 311 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 388 (725)
.... +..+.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|
T Consensus 243 ~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 243 MGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 3211 11122222222334333 678888888888888778888888888888888888888778
Q ss_pred ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCC
Q 041178 389 HSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPK 468 (725)
Q Consensus 389 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 468 (725)
..+..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..+..|..+++|++|++++|.+++. ..+++
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~ 382 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS 382 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence 8888888888888888888888888888888888888888888888888888888999999998888743 23788
Q ss_pred CcEEECCCCcccccCCccccccCCCcEEEccCCcccccC-chhhhcCCCCCeEeccCceecCCCCc-cccCccccccccc
Q 041178 469 LGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEI-PVQLAKLFSLNKLILSLNQLSGGMPF-ELGSLTELQYLDL 546 (725)
Q Consensus 469 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 546 (725)
|+.+++++|+++ .+|.. ..+++.|++++|++.+.. +..+..+++|++|++++|++++..+. .+..+++|++|++
T Consensus 383 L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 383 IPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp CSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred cchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 899999999887 44443 457899999999998653 33456899999999999999865443 4566899999999
Q ss_pred cccccc-----cccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178 547 SANKLR-----SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 547 s~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 621 (725)
++|.+. +..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 999987 44456788999999999999999999999999999999999999999887777766 89999999999
Q ss_pred ccccccCccccCCCCCCEEeCcCCCccccCCCCCCcCceeccCCCCCCCC
Q 041178 622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFKDARMEGNKGLCGN 671 (725)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~gn~~lc~~ 671 (725)
++++.+|..|. +|+.+++++|++.+.++.. .|..+...++..+||.
T Consensus 537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~-~f~~~~~~~~~~~~~~ 582 (844)
T 3j0a_A 537 QLLAPNPDVFV---SLSVLDITHNKFICECELS-TFINWLNHTNVTIAGP 582 (844)
T ss_dssp CCCCCCSCCCS---SCCEEEEEEECCCCSSSCC-SHHHHHHHTTTTTCCC
T ss_pred cCCCCChhHhC---CcCEEEecCCCcccccccH-HHHHHHHhcCcccccc
Confidence 99999998764 7899999999999888753 2223323344444443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-57 Score=515.91 Aligned_cols=537 Identities=19% Similarity=0.195 Sum_probs=417.6
Q ss_pred EEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCC
Q 041178 86 SINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVN 165 (725)
Q Consensus 86 ~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 165 (725)
.+++++.+++. +|. .+ .+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 15 ~~~c~~~~l~~-ip~-~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPD-DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSS-CCT-TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCccc-CCC-CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 35556666553 231 22 278999999999998888888999999999999999999888888999999999999999
Q ss_pred cCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCC
Q 041178 166 QLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIP 244 (725)
Q Consensus 166 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 244 (725)
.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 9988888889999999999999999887777788888999999999988875 568888888888888888888887777
Q ss_pred ccccCCCCCC----ceeeccccccccCCccccCCCCCCEEEccCCccc-cccCCCCCCCCCccEEEccCCcCcccCcccc
Q 041178 245 FSLGNLSNLG----ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS-GSIPISLGNLSSLTVMSLFSNSLSSFIPPIL 319 (725)
Q Consensus 245 ~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 319 (725)
..++.+++|+ +|++++|.+++..+..+... +|++|++++|.++ +..|..+.++++|+.+++..+.+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---- 245 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER---- 245 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC----
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC----
Confidence 7777666654 57777777775554444433 6777777777664 344555666666666666544333210
Q ss_pred cCCCcccccccccccccccCCccCcCCCCCCEEEc-cCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCc
Q 041178 320 GNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYL-YNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELV 398 (725)
Q Consensus 320 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 398 (725)
.+..+ ....+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.+++++|.+. .+| .+..+++|+
T Consensus 246 ----~l~~~-------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~ 310 (606)
T 3vq2_A 246 ----NLEIF-------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQ 310 (606)
T ss_dssp ----CCSCC-------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCS
T ss_pred ----ccccc-------ChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCC
Confidence 00000 00111112222 3455555 55566666655 666777777777777765 344 666777777
Q ss_pred EEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccc--cCccccCCCCCcEEECCC
Q 041178 399 LVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGE--ISFNWRNFPKLGTFIVSM 476 (725)
Q Consensus 399 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~L~~L~l~~ 476 (725)
.|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|++++. .+..+..+++|+.|++++
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 777777777 5666 34 7777888888877544433 556788888888888888766 367788888888888888
Q ss_pred CcccccCCccccccCCCcEEEccCCcccccCc-hhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccccc-c
Q 041178 477 NNISGSIPLEIGESFKLQVLDISSNHIVGEIP-VQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS-W 554 (725)
Q Consensus 477 n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ 554 (725)
|.+.+ +|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 88775 56778888999999999999988877 678899999999999999998899999999999999999999988 4
Q ss_pred cccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCC
Q 041178 555 IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGM 634 (725)
Q Consensus 555 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 634 (725)
+|..+..+++|++|++++|++++..|..++++++|++|++++|++++.+|..++++++|++|++++|+++ .+|..+..+
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 7888999999999999999999999999999999999999999999999999999999999999999998 677778888
Q ss_pred C-CCCEEeCcCCCccccCCC
Q 041178 635 H-NLSHIDISYNELQGPIPN 653 (725)
Q Consensus 635 ~-~L~~L~ls~N~l~g~ip~ 653 (725)
+ +|+++++++|++.+.++.
T Consensus 544 ~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CTTCCEEECCSCCCCCSSTT
T ss_pred cccCcEEEccCCCcccCCcc
Confidence 6 699999999999988775
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-56 Score=507.60 Aligned_cols=519 Identities=23% Similarity=0.201 Sum_probs=422.6
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEE
Q 041178 82 ERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLY 161 (725)
Q Consensus 82 ~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 161 (725)
.+++.++++++.+.+..+ ..|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 579999999999987665 6899999999999999999998899999999999999999999988899999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCC----EEEccC
Q 041178 162 FDVNQLHGPIPQEIGQLSLINELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS----TLDLSK 236 (725)
Q Consensus 162 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~ 236 (725)
+++|.+++..|..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999998887889999999999999999986 6799999999999999999999998888887776655 899999
Q ss_pred CcCcccCCccccCCCCCCceeecccccc-ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC
Q 041178 237 NQLSGSIPFSLGNLSNLGILYLYSNSLS-GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI 315 (725)
Q Consensus 237 n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 315 (725)
|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+.. .+.. +....
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~-------~~~~~ 254 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEI-------FEPSI 254 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSC-------CCGGG
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------cccc-------cChHH
Confidence 99997665555544 9999999999987 456778899999999988765543211 1110 01111
Q ss_pred cccccCCCccccccc-ccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCC
Q 041178 316 PPILGNLKSLSALGL-HINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNL 394 (725)
Q Consensus 316 ~~~l~~l~~L~~L~l-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 394 (725)
+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+
T Consensus 255 ~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l 327 (606)
T 3vq2_A 255 MEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DL 327 (606)
T ss_dssp GTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CC
T ss_pred hhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CC
Confidence 1112222 3444444 45555555554 6666667777777666643 33 566666777777777776 4566 33 67
Q ss_pred CCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccc--cccccCCCCCCEEeCcCCccccccCccccCCCCCcEE
Q 041178 395 TELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKV--YEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTF 472 (725)
Q Consensus 395 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 472 (725)
++|+.|++++|...+.+ .+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++ +|..+..+++|+.|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence 77777777777544433 4567778888888888877663 6777788888888888888775 45778888899999
Q ss_pred ECCCCcccccCC-ccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC-CCCccccCccccccccccccc
Q 041178 473 IVSMNNISGSIP-LEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG-GMPFELGSLTELQYLDLSANK 550 (725)
Q Consensus 473 ~l~~n~~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~ 550 (725)
++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|+
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999998888777 678889999999999999998899999999999999999999997 478889999999999999999
Q ss_pred cccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCC-CCCEEeCCCCccccccC
Q 041178 551 LRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMK-SLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 551 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p 628 (725)
+++..|..+..+++|++|++++|++++.+|..++++++|++|+|++|+++ .+|..+..++ +|++|++++|++....+
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99988999999999999999999999999999999999999999999996 6777788887 69999999999986544
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-57 Score=518.34 Aligned_cols=494 Identities=19% Similarity=0.266 Sum_probs=303.6
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcc---CcceeCCCCCEEEEEcCCCCCcccc
Q 041178 22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAW---VGISCNQAERIISINLSSMGLNGTL 98 (725)
Q Consensus 22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w---~gv~C~~~~~v~~l~l~~~~l~~~~ 98 (725)
+++...|++||.++++++..+ .|... ...++....|..+.+||.| .||+|+..+||++|+|+++++.|.+
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~------~w~~~-~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGK------NWSQQ-GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV 97 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG------GCCCC-C------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHcCCC------CcccC-CcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC
Confidence 334568999999999998654 34211 0111222233445799999 9999998899999999999999999
Q ss_pred CCcccCCCCCCcEEECCCCCC------Cc------cCchhccCCCCCCEEECCCCCCCCCCCccCcC-CCC---------
Q 041178 99 QEFAFSSFPHLVHLNLSFNIV------FG------TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGH-LNQ--------- 156 (725)
Q Consensus 99 ~~~~~~~l~~L~~L~Ls~n~~------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~--------- 156 (725)
+ ++++++++|++|+|++|.+ .| .+|... +..|+ +++++|.+.+.+|..+.. +.+
T Consensus 98 p-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 98 P-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp C-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred C-hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 9 7999999999999999976 33 445444 55666 788888887777766642 111
Q ss_pred ---------CCEEEcc--CCcCCCCCCccccCCCCCCEEEcCCCcCCCC-----------------CCCCcC--CCCCCc
Q 041178 157 ---------LRSLYFD--VNQLHGPIPQEIGQLSLINELALCHNNLYGP-----------------IPPSLG--NLSNLA 206 (725)
Q Consensus 157 ---------L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~ 206 (725)
++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|+.++ ++++|+
T Consensus 174 ~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~ 252 (636)
T 4eco_A 174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252 (636)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred ccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC
Confidence 1111111 345555 666666666666666666666653 566655 666666
Q ss_pred EEEccCCcCCccCccccCCCCCCCEEEccCCc-Ccc-cCCccccCC------CCCCceeeccccccccCCc--cccCCCC
Q 041178 207 NFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ-LSG-SIPFSLGNL------SNLGILYLYSNSLSGPIPS--VIGNLES 276 (725)
Q Consensus 207 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~ 276 (725)
+|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++
T Consensus 253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~ 331 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331 (636)
T ss_dssp EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence 66666666666666666666666666666665 555 555555554 55555555555555 4554 5555555
Q ss_pred CCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCc-ccccccccccccccCCccCcCCCCCCEEEcc
Q 041178 277 LLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS-LSALGLHINQLNGVIPSSIGNLSNLRLLYLY 355 (725)
Q Consensus 277 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 355 (725)
|++|++++|+++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++
T Consensus 332 L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~-------- 400 (636)
T 4eco_A 332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS-------- 400 (636)
T ss_dssp CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC--------
T ss_pred CCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc--------
Confidence 5555555555555555 5555555555555555554 34444444444 555555555544 3444443322
Q ss_pred CCcCccCCcccccCCCCCCEEECcCcccccccccccc-------CCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcC
Q 041178 356 NNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIG-------NLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQ 428 (725)
Q Consensus 356 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 428 (725)
+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 401 --------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 401 --------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp --------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred --------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 11444444444444444444444 445566666666666533333344466666666666
Q ss_pred ccccccccccccC-------CCCCCEEeCcCCccccccCcccc--CCCCCcEEECCCCcccccCCccccccCCCcEEEcc
Q 041178 429 NNLSGKVYEAFGY-------HPNLTFLDLSQNNFYGEISFNWR--NFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDIS 499 (725)
Q Consensus 429 n~l~~~~~~~~~~-------~~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls 499 (725)
|+++...+..+.. +++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 6666332223322 237888888888887 5666665 78888888888888886 77777888888888886
Q ss_pred CCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc
Q 041178 500 SNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI 576 (725)
Q Consensus 500 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 576 (725)
+|+ ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|++|++++|++.
T Consensus 545 ~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 545 NQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 654 3455666666666666666666666666666 33555444 56666666666554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-55 Score=519.38 Aligned_cols=527 Identities=22% Similarity=0.205 Sum_probs=387.2
Q ss_pred CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccC-chhccCCCCCCEEECCCCCCCCCCC
Q 041178 70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTI-PPQVGNLSKLQHLDLGNNQLTGVIP 148 (725)
Q Consensus 70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p 148 (725)
.|+|..|.+ -..+++.|+|+++.+.+..+ ..|..+++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 467899988 66889999999999987666 68999999999999999777776 7789999999999999999999999
Q ss_pred ccCcCCCCCCEEEccCCcCCCCCCcc--ccCCCCCCEEEcCCCcCCCCCC-CCcCCCCCCcEEEccCCcCCccCccccCC
Q 041178 149 PEIGHLNQLRSLYFDVNQLHGPIPQE--IGQLSLINELALCHNNLYGPIP-PSLGNLSNLANFYLNNNLLFDSIPLVLGN 225 (725)
Q Consensus 149 ~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 225 (725)
..|+++++|++|+|++|.+++.+|.. ++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..|..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999999877765 8999999999999999998765 57899999999999999999988888887
Q ss_pred C--CCCCEEEccCCcCcccCCccccCCCC------CCceeeccccccccCCccccCC---CCCCEEEccCCccccccCCC
Q 041178 226 L--KSISTLDLSKNQLSGSIPFSLGNLSN------LGILYLYSNSLSGPIPSVIGNL---ESLLQLDLSENQLSGSIPIS 294 (725)
Q Consensus 226 l--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~ 294 (725)
+ ++|+.|+++.|.+.+..|..++.+++ |++|++++|.+++..+..+... .+++.+.++.+......
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~--- 247 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF--- 247 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS---
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc---
Confidence 7 89999999999999988888877766 9999999999998888776543 57888888744332110
Q ss_pred CCCCCCccEEEccCCcCcccCcccccCC--CcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCC
Q 041178 295 LGNLSSLTVMSLFSNSLSSFIPPILGNL--KSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS 372 (725)
Q Consensus 295 l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 372 (725)
..+.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 248 ------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 248 ------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315 (844)
T ss_dssp ------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred ------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence 1111222222222222 34444445444444444444444555555555555554444444445555
Q ss_pred CCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcC
Q 041178 373 IFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452 (725)
Q Consensus 373 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 452 (725)
|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+++.. .+++|+.+++++
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~ 390 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSG 390 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEES
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCC
Confidence 555555555554444455555555555555555555444445555555555555555554321 245566666666
Q ss_pred CccccccCccccCCCCCcEEECCCCcccccC-CccccccCCCcEEEccCCcccccCch-hhhcCCCCCeEeccCceec--
Q 041178 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSI-PLEIGESFKLQVLDISSNHIVGEIPV-QLAKLFSLNKLILSLNQLS-- 528 (725)
Q Consensus 453 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~-- 528 (725)
|+++. +|.. ..+++.+++++|++.+.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.++
T Consensus 391 N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 391 NKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred CCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 66552 2221 345666666666666432 22345677888888888887755433 3455788888888888886
Q ss_pred ---CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcc
Q 041178 529 ---GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPF 605 (725)
Q Consensus 529 ---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 605 (725)
+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+. ++|+.|+|++|++++.+|.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 34556788999999999999999998888899999999999999999987777665 8999999999999999997
Q ss_pred cccCCCCCCEEeCCCCcccccc
Q 041178 606 QICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 606 ~~~~l~~L~~L~Ls~N~l~~~~ 627 (725)
.+ .+|+.|++++|++....
T Consensus 545 ~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 545 VF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp CC---SSCCEEEEEEECCCCSS
T ss_pred Hh---CCcCEEEecCCCccccc
Confidence 65 47999999999987543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-54 Score=498.58 Aligned_cols=497 Identities=20% Similarity=0.239 Sum_probs=279.8
Q ss_pred ccCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcc------------CcceeCCCCCEEEEE
Q 041178 21 IASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAW------------VGISCNQAERIISIN 88 (725)
Q Consensus 21 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w------------~gv~C~~~~~v~~l~ 88 (725)
.+++..+|++||++||+++.++ +|+ .+. .|++...++|+| .||+|+..+||++|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~------~W~---~~~----~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~ 329 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK------NWR---YYS----GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLS 329 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG------GCC---CCC----SSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEE
T ss_pred ccccchHHHHHHHHHHHHcCCC------CCC---cCC----CcccccCCccccccccccccccCcCceEecCCCCEEEEE
Confidence 3445678999999999999643 785 210 011111233999 999999889999999
Q ss_pred cCCCCCccccCCcccCCCCCCcEEEC-CCCCCCccCchhcc---------------------------------------
Q 041178 89 LSSMGLNGTLQEFAFSSFPHLVHLNL-SFNIVFGTIPPQVG--------------------------------------- 128 (725)
Q Consensus 89 l~~~~l~~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~~~--------------------------------------- 128 (725)
|+++++.|.+| +++++|++|++|+| ++|.+.|..|....
T Consensus 330 Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 330 LAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp CTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred CccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 99999999999 79999999999999 88888776332211
Q ss_pred ------------CCCCCCEEECC--CCCCCCCCCccCcCCCCCCEEEccCCcCCCC-CCccccCCCCCCEEEcCCCcCCC
Q 041178 129 ------------NLSKLQHLDLG--NNQLTGVIPPEIGHLNQLRSLYFDVNQLHGP-IPQEIGQLSLINELALCHNNLYG 193 (725)
Q Consensus 129 ------------~l~~L~~L~Ls--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~ 193 (725)
....++.+.+. .|.+++ +|..|+++++|++|+|++|.+++. +|..... .+.|.+.|
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------~s~n~~~g 479 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------ANSDYAKQ 479 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--------TTSHHHHH
T ss_pred hhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc--------cccccccc
Confidence 11112222222 244554 555555555555555555555541 0000000 00000000
Q ss_pred CCCCCcC--CCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCc-Ccc-cCCccccCCC-------CCCceeecccc
Q 041178 194 PIPPSLG--NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ-LSG-SIPFSLGNLS-------NLGILYLYSNS 262 (725)
Q Consensus 194 ~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~ 262 (725)
.+|+.++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|++|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 2444444 44444444444444444444444444444444444444 444 4444333332 45555555555
Q ss_pred ccccCCc--cccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCc-ccccccccccccccC
Q 041178 263 LSGPIPS--VIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS-LSALGLHINQLNGVI 339 (725)
Q Consensus 263 l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~ 339 (725)
++ .+|. .++++++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 44 4444 4445555555555555544 444 4444555555555555544 34444444444 555555555544 44
Q ss_pred CccCcCCCC--CCEEEccCCcCccCCcccc---c--CCCCCCEEECcCccccccccccc-cCCCCCcEEEcCCCcCCCCC
Q 041178 340 PSSIGNLSN--LRLLYLYNNGFYGFVPEEI---G--YLKSIFELELCTNRLRGGIPHSI-GNLTELVLVNMCENHLSGPI 411 (725)
Q Consensus 340 ~~~l~~l~~--L~~L~L~~n~l~~~~~~~l---~--~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~ 411 (725)
|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.++ .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 444443332 5555555555544433211 1 1234555555555555 333332 24555555555555555 33
Q ss_pred Ccccc--------CCCCCcEEECcCcccccccccccc--CCCCCCEEeCcCCccccccCccccCCCCCcEEECCC-----
Q 041178 412 PKSLR--------NLTSLERVRFNQNNLSGKVYEAFG--YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM----- 476 (725)
Q Consensus 412 p~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~----- 476 (725)
|..+. ++++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 33222 1225666666666666 4444444 56666666666666665 455566666666666654
Q ss_pred -CcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccc
Q 041178 477 -NNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR 552 (725)
Q Consensus 477 -n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 552 (725)
|++.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.|.+|+..
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 777788888888888888888888888 67777654 58888888888887666666655556666677766554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-52 Score=472.98 Aligned_cols=521 Identities=21% Similarity=0.202 Sum_probs=417.2
Q ss_pred CcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCC
Q 041178 109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188 (725)
Q Consensus 109 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 188 (725)
.+.++.++.+++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456777766654 3555443 5799999999999988888999999999999999999988788899999999999999
Q ss_pred CcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccC
Q 041178 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPI 267 (725)
Q Consensus 189 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~ 267 (725)
|.+++..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99998888899999999999999999987666679999999999999999987 46889999999999999999999887
Q ss_pred CccccCCCCC----CEEEccCCccccccCCCCCCCCCccEEEccCCcCcc-cCcccccCCCcccccccccccccccCCcc
Q 041178 268 PSVIGNLESL----LQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS-FIPPILGNLKSLSALGLHINQLNGVIPSS 342 (725)
Q Consensus 268 p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 342 (725)
+..++.+++| +++++++|.+++..|..+... +|+.|++++|.... .++..+..+++++...+....+..
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~----- 239 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----- 239 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-----
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-----
Confidence 8888888888 899999999988777777655 79999998875432 234455566666655544332211
Q ss_pred CcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCc-cccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCC
Q 041178 343 IGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN-RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSL 421 (725)
Q Consensus 343 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 421 (725)
...++ .+....+ ..+..+ .++.+++.++ .+.+..|..+..+++|+.+++++|.+. .+|..+..+ +|
T Consensus 240 ---~~~l~--~~~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L 306 (570)
T 2z63_A 240 ---EGNLE--KFDKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW 306 (570)
T ss_dssp ---CSSCE--ECCTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred ---chhhh--hcchhhh-----cccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence 01111 0111111 111111 2455566665 566666777777777777777777776 366666666 77
Q ss_pred cEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccC--CccccccCCCcEEEcc
Q 041178 422 ERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSI--PLEIGESFKLQVLDIS 499 (725)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~Ls 499 (725)
+.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|+.|++++|.+++.. |..+..+++|++|+++
T Consensus 307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 77887777776 3333 3567888888888887766554 67888888888888887654 6678888999999999
Q ss_pred CCcccccCchhhhcCCCCCeEeccCceecCCCC-ccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc-c
Q 041178 500 SNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMP-FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI-Q 577 (725)
Q Consensus 500 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~ 577 (725)
+|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +
T Consensus 382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 9998876555 8889999999999999998766 57889999999999999999988999999999999999999997 6
Q ss_pred cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCc
Q 041178 578 KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657 (725)
Q Consensus 578 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 657 (725)
.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|..|..+++|++|++++|+++|.+|....+
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 78999999999999999999999998999999999999999999999988889999999999999999999999976544
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.9e-51 Score=459.00 Aligned_cols=498 Identities=21% Similarity=0.222 Sum_probs=385.6
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999988889999999999999999999888889999999999999999999888899999999999999
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCCccccCCCCC----Cceeeccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL----GILYLYSN 261 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n 261 (725)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997766679999999999999999987 579999999999999999999998888889988888 89999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcccc-ccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178 262 SLSGPIPSVIGNLESLLQLDLSENQLSG-SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340 (725)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 340 (725)
.+.+..|..+..+ +|++|++++|.... .++..+..+++++...+....+... .+++.+ ....+.
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~~--~~~~~~---- 252 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEKF--DKSALE---- 252 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEEC--CTTTTG----
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhhhc--chhhhc----
Confidence 9998888877766 89999999885431 2344455677777766654332211 111110 000000
Q ss_pred ccCcCCCCCCEEEccCC-cCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCC
Q 041178 341 SSIGNLSNLRLLYLYNN-GFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT 419 (725)
Q Consensus 341 ~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 419 (725)
.+..+ .++.++++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..++
T Consensus 253 -~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~ 325 (570)
T 2z63_A 253 -GLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK 325 (570)
T ss_dssp -GGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred -ccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence 01111 1344444444 444445555555555555555555555 355555555 6666666666655 3333 3456
Q ss_pred CCcEEECcCccccccccccccCCCCCCEEeCcCCcccccc--CccccCCCCCcEEECCCCcccccCCccccccCCCcEEE
Q 041178 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEI--SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLD 497 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 497 (725)
+|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence 666666666666554443 45677777777777776543 55566777777778877777754444 77788888888
Q ss_pred ccCCcccccCc-hhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccc-cccccccccCCCCCEEeCCCCcC
Q 041178 498 ISSNHIVGEIP-VQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLR-SWIPKSIGNLLKLRYLNLSNNQF 575 (725)
Q Consensus 498 Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
+++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 88888877665 46788889999999999998888888899999999999999987 56888999999999999999999
Q ss_pred cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCc
Q 041178 576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPR 629 (725)
Q Consensus 576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 629 (725)
++..|..+..+++|++|++++|.+++.+|..+.++++|+.|++++|++++..|.
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999899999999999999999999988888899999999999999999987663
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-50 Score=449.73 Aligned_cols=489 Identities=19% Similarity=0.186 Sum_probs=307.1
Q ss_pred ECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCC
Q 041178 137 DLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLF 216 (725)
Q Consensus 137 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 216 (725)
|.+++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 44444444 3333332 44455555555444444444445555555555555554444444555555555555555554
Q ss_pred ccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCC-ccccCCCCCCEEEccCCccccccCCC
Q 041178 217 DSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIP-SVIGNLESLLQLDLSENQLSGSIPIS 294 (725)
Q Consensus 217 ~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~ 294 (725)
+..|..++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 4444445555555555555555543 234445555555555555555322332 34555666666666666666556666
Q ss_pred CCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccC--C-ccCcCCCCCCEEEccCCcCccCCcc----cc
Q 041178 295 LGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVI--P-SSIGNLSNLRLLYLYNNGFYGFVPE----EI 367 (725)
Q Consensus 295 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~----~l 367 (725)
+..+++|++|++++|.+.......+..+++|++|++++|++++.. | .....+++|+.|++++|.+.+..+. .+
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 666666666666666554332222344566666666666665421 1 1123455666666666665543222 22
Q ss_pred cCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcccccc-----ccccccCC
Q 041178 368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGK-----VYEAFGYH 442 (725)
Q Consensus 368 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~ 442 (725)
..+++++.+++++|.+.+...... .....+..+.+|+.+.+.++.+... .+..+...
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred hhhccccccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 344556666666655543211000 0011223344555555555544321 11122334
Q ss_pred CCCCEEeCcCCccccccCccc-cCCCCCcEEECCCCcccccCC---ccccccCCCcEEEccCCcccccCc--hhhhcCCC
Q 041178 443 PNLTFLDLSQNNFYGEISFNW-RNFPKLGTFIVSMNNISGSIP---LEIGESFKLQVLDISSNHIVGEIP--VQLAKLFS 516 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~ 516 (725)
++|++|++++|.+. .+|..+ ..+++|++|++++|++.+.+| ..++.+++|++|++++|++++..+ ..+..+++
T Consensus 310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 67888888888776 455544 568888888888888887664 346778899999999999886543 56888999
Q ss_pred CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596 (725)
Q Consensus 517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+ .++|++|++++|++++.+ ..+++|++|+|++
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR 460 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred CCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence 999999999998 678888899999999999999886 44433 268999999999998754 5789999999999
Q ss_pred cccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCc
Q 041178 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657 (725)
Q Consensus 597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 657 (725)
|+++ .+|. ...+++|++|+|++|++++.+|..|..+++|++|++++|++.|.+|....+
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l 519 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence 9996 6775 567999999999999999999999999999999999999999988854333
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-50 Score=461.82 Aligned_cols=458 Identities=18% Similarity=0.225 Sum_probs=369.9
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCC------CC------CCCccCcCCCCCCEEEccCCcCCCCCCcc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQL------TG------VIPPEIGHLNQLRSLYFDVNQLHGPIPQE 174 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l------~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 174 (725)
.+++.|+|+++.+.|.+|++++++++|++|+|++|.+ .| .+|... +.+|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4789999999999999999999999999999999976 23 344433 55677 888888888877776
Q ss_pred ccC-CCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEcc--CCcCCccCccccCCCCCCCEEEccCCcCccc---------
Q 041178 175 IGQ-LSLINELALCHNNLYGPIPPSLGNLSNLANFYLN--NNLLFDSIPLVLGNLKSISTLDLSKNQLSGS--------- 242 (725)
Q Consensus 175 ~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--------- 242 (725)
+.. +..+..+++....+.. .....++.+++. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 652 2222223332222211 111222222232 456666 777777788888888888887775
Q ss_pred --------CCcccc--CCCCCCceeeccccccccCCccccCCCCCCEEEccCCc-ccc-ccCCCCCCC------CCccEE
Q 041178 243 --------IPFSLG--NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ-LSG-SIPISLGNL------SSLTVM 304 (725)
Q Consensus 243 --------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L 304 (725)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 788877 88888888888888888888888888888888888887 777 777766665 888888
Q ss_pred EccCCcCcccCcc--cccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCC-CCEEECcCc
Q 041178 305 SLFSNSLSSFIPP--ILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKS-IFELELCTN 381 (725)
Q Consensus 305 ~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n 381 (725)
++++|.++ .+|. .++.+++|++|++++|++.|.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 88888888 5777 78888888888888888888888 8888888899999988888 67777888888 999999999
Q ss_pred cccccccccccCCC--CCcEEEcCCCcCCCCCCcccc-------CCCCCcEEECcCccccccccccccCCCCCCEEeCcC
Q 041178 382 RLRGGIPHSIGNLT--ELVLVNMCENHLSGPIPKSLR-------NLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ 452 (725)
Q Consensus 382 ~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~ 452 (725)
.++ .+|..+..+. +|+.|++++|.+++.+|..+. .+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 988 7888877655 899999999999999999888 788999999999999966666677899999999999
Q ss_pred CccccccCcc-ccCC-------CCCcEEECCCCcccccCCcccc--ccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178 453 NNFYGEISFN-WRNF-------PKLGTFIVSMNNISGSIPLEIG--ESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL 522 (725)
Q Consensus 453 n~l~~~~~~~-~~~~-------~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 522 (725)
|+++ .+|.. +... ++|+.|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++
T Consensus 467 N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 467 NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred CCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 9999 55543 3333 39999999999999 7888887 89999999999999997 8888889999999999
Q ss_pred cCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCcc
Q 041178 523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE 602 (725)
Q Consensus 523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 602 (725)
++|+ ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|++|+|++|++...
T Consensus 544 s~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 544 RNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 9887 6788999999999999999999999999999 78888766 8999999999987543
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.6e-49 Score=441.32 Aligned_cols=491 Identities=21% Similarity=0.214 Sum_probs=344.5
Q ss_pred CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178 70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP 149 (725)
Q Consensus 70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 149 (725)
.|.|.|+ |+. ++++++ .+|. .+ .++|++|++++|.+.+..|..|+++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~~---------~~~~l~-~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG---------RSRSFT-SIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC---------TTSCCS-SCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC---------CCCccc-cccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4899998 853 233333 2332 22 37999999999999988889999999999999999999988889
Q ss_pred cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCC-CCCCCcCCCCCCcEEEccCCcCCccCc-cccCCCC
Q 041178 150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYG-PIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLK 227 (725)
Q Consensus 150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~ 227 (725)
.|+++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..++.++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998888889999999999999999987 467789999999999999998555555 6899999
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcccccc--CC-CCCCCCCccEE
Q 041178 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSI--PI-SLGNLSSLTVM 304 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~-~l~~l~~L~~L 304 (725)
+|++|++++|.+++..|..++.+++|++|+++.|.+....+..+..+++|++|++++|++++.. |. ....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999999999999999999999999999999876432233456889999999999988642 21 23456788889
Q ss_pred EccCCcCcccCcc----cccCCCcccccccccccccccCC------ccCcCCCCCCEEEccCCcCccCCcccccCCCCCC
Q 041178 305 SLFSNSLSSFIPP----ILGNLKSLSALGLHINQLNGVIP------SSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIF 374 (725)
Q Consensus 305 ~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 374 (725)
++++|.+++..+. .+..+++|+.+++++|.+.+... ..+..+++|+.|++.++.+..... +.
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~------ 300 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FY------ 300 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--SC------
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--cc------
Confidence 9888887765433 33456677777777776654211 123444555555555554332100 00
Q ss_pred EEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccc-cCCCCCcEEECcCcccccccc---ccccCCCCCCEEeC
Q 041178 375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSL-RNLTSLERVRFNQNNLSGKVY---EAFGYHPNLTFLDL 450 (725)
Q Consensus 375 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l 450 (725)
.++..+....+|+.+++++|.+. .+|..+ ..+++|+.|++++|++++..+ ..+..+++|++|++
T Consensus 301 -----------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 301 -----------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp -----------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred -----------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 01111222345566666666554 344333 355666666666666665443 22455666666666
Q ss_pred cCCccccccC--ccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceec
Q 041178 451 SQNNFYGEIS--FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS 528 (725)
Q Consensus 451 s~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 528 (725)
++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+ .++|++|++++|+++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCS
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChh
Confidence 6666654322 33556666666666666666 4566666666777777777766532 2222 246777777777777
Q ss_pred CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc
Q 041178 529 GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604 (725)
Q Consensus 529 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 604 (725)
+.. ..+++|++|++++|+++. +|. ...+++|++|++++|++++.+|..+..+++|++|++++|.+.+..|
T Consensus 445 ~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 445 SFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 542 356777777777777774 554 4567777788888777777777777777777788888887776665
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-46 Score=430.12 Aligned_cols=550 Identities=19% Similarity=0.190 Sum_probs=383.4
Q ss_pred CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178 70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP 149 (725)
Q Consensus 70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 149 (725)
+..|....|.... +.++.++.+++. +|. .+ -+++++|||++|.+++..+.+|.++++|++|+|++|.+++..|.
T Consensus 21 p~~~~~c~~~~~~--~~~~c~~~~l~~-vP~-~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~ 94 (635)
T 4g8a_A 21 PESWEPCVEVVPN--ITYQCMELNFYK-IPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 94 (635)
T ss_dssp ----CCSEEEETT--TEEECTTSCCSS-CCS-SS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCccccCCC--CEEECCCCCcCc-cCC-CC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence 4456554443222 234666666653 331 11 14799999999999988888999999999999999999988888
Q ss_pred cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCC
Q 041178 150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKS 228 (725)
Q Consensus 150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~ 228 (725)
+|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|..++.+++
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence 89999999999999999997777789999999999999999998777788999999999999998865 46777888899
Q ss_pred CCEEEccCCcCcccCCccccCCCCCC----ceeeccccccccCCccccCCCCCCEEEccCCccccc-cCCCCCCCCCccE
Q 041178 229 ISTLDLSKNQLSGSIPFSLGNLSNLG----ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGS-IPISLGNLSSLTV 303 (725)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~ 303 (725)
|++|++++|++++..+..+..+.+++ .++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++.
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~ 253 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 253 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccc
Confidence 99999999998887777776655543 45566666654433333 223445566655543221 1222333444444
Q ss_pred EEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCcc---CCcccccCCCCCCEEECcC
Q 041178 304 MSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG---FVPEEIGYLKSIFELELCT 380 (725)
Q Consensus 304 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~ 380 (725)
..+..+...... .+.......+..+..+....+..+.... ..+..+....+++.+.+.+
T Consensus 254 ~~l~~~~~~~~~------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 254 HRLVLGEFRNEG------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp EEEEEECCTTSC------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred cccccccccccc------------------ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 444322211100 0001111122222233333333222111 1222233444555555555
Q ss_pred ccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcccc--c
Q 041178 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG--E 458 (725)
Q Consensus 381 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~--~ 458 (725)
+.+.... .+.....++.+++.+|.+.+..+. .+..|+.+++..|...... ....+++|+.+++++|.+.. .
T Consensus 316 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 316 VTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp CEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccc
Confidence 5544322 233345566666666655543322 3455666666666554322 23356777777777776643 3
Q ss_pred cCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCc-hhhhcCCCCCeEeccCceecCCCCccccC
Q 041178 459 ISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIP-VQLAKLFSLNKLILSLNQLSGGMPFELGS 537 (725)
Q Consensus 459 ~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 537 (725)
.+..+....+|+.+++..+.... .+..+..+++|+.++++.+......+ ..+..+.+++.++++.|.+.+..+..+..
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 34455667777888877777654 34556777888888888877655444 46778889999999999999888888999
Q ss_pred cccccccccccccc-ccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEE
Q 041178 538 LTELQYLDLSANKL-RSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKL 616 (725)
Q Consensus 538 l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 616 (725)
+++|++|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|++++..|..|+++++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 99999999999975 45678889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCccccccCccccCC-CCCCEEeCcCCCccccCC
Q 041178 617 NLCHNNLSGFIPRCFEGM-HNLSHIDISYNELQGPIP 652 (725)
Q Consensus 617 ~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip 652 (725)
||++|++++.+|..|..+ ++|++|++++|++.+.+.
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999998 689999999999998765
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-47 Score=441.39 Aligned_cols=464 Identities=17% Similarity=0.200 Sum_probs=316.5
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEEC-CCCCCCCCCCccCcCCC-CCCE-----E---------E-ccCCcCCC
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDL-GNNQLTGVIPPEIGHLN-QLRS-----L---------Y-FDVNQLHG 169 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~l~-~L~~-----L---------~-L~~n~l~~ 169 (725)
.+++.|+|+++.+.|.+|++++++++|++|+| ++|.++|..|....... .+.. + + .....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 89988877553311110 0000 0 0 00000000
Q ss_pred -----------CCCccccCCCCCCEEEcCC--CcCCCCCCCCcCCCCCCcEEEccCCcCCc-----------------cC
Q 041178 170 -----------PIPQEIGQLSLINELALCH--NNLYGPIPPSLGNLSNLANFYLNNNLLFD-----------------SI 219 (725)
Q Consensus 170 -----------~~p~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~ 219 (725)
..+........++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111112223344444443 67776 77788888888888888888877 48
Q ss_pred ccccC--CCCCCCEEEccCCcCcccCCccccCCCCCCceeecccc-ccc-cCCccccCC-------CCCCEEEccCCccc
Q 041178 220 PLVLG--NLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS-LSG-PIPSVIGNL-------ESLLQLDLSENQLS 288 (725)
Q Consensus 220 p~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l-------~~L~~L~L~~n~l~ 288 (725)
|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99988 99999999999999999999999999999999999998 988 788766555 49999999999999
Q ss_pred cccCC--CCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCC-CCEEEccCCcCccCCcc
Q 041178 289 GSIPI--SLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSN-LRLLYLYNNGFYGFVPE 365 (725)
Q Consensus 289 ~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~ 365 (725)
.+|. .+.++++|++|++++|.++ .+| .++.+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 8898 8999999999999999999 677 8999999999999999999 88989999999 999999999998 6787
Q ss_pred cccCCCC--CCEEECcCccccccccccc---c--CCCCCcEEEcCCCcCCCCCCcc-ccCCCCCcEEECcCccccccccc
Q 041178 366 EIGYLKS--IFELELCTNRLRGGIPHSI---G--NLTELVLVNMCENHLSGPIPKS-LRNLTSLERVRFNQNNLSGKVYE 437 (725)
Q Consensus 366 ~l~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~ 437 (725)
.+...+. |+.|++++|++.+.+|... . .+.+|+.|++++|.++. +|.. +..+++|+.|++++|+++.....
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChH
Confidence 7776644 8899999998887665322 2 23366677777776663 3333 33566666666666666522222
Q ss_pred cccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc--ccCCCcEEEccCCcccccCchhhhcCC
Q 041178 438 AFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG--ESFKLQVLDISSNHIVGEIPVQLAKLF 515 (725)
Q Consensus 438 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 515 (725)
.+.... ..+.++++|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..++
T Consensus 716 ~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~ 776 (876)
T 4ecn_A 716 SLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776 (876)
T ss_dssp SSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT
T ss_pred Hhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC
Confidence 222111 00112224555555555544 4444444 55555555555555554 455555555
Q ss_pred CCCeEeccC------ceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccc
Q 041178 516 SLNKLILSL------NQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589 (725)
Q Consensus 516 ~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 589 (725)
+|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~ 853 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA 853 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHT
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccc
Confidence 555555544 556666666666666666666666666 34555443 466666666666655544444444444
Q ss_pred cccccccccc
Q 041178 590 SKLDLSYNFL 599 (725)
Q Consensus 590 ~~L~Ls~N~l 599 (725)
..+.|.+|..
T Consensus 854 ~~~~L~~n~~ 863 (876)
T 4ecn_A 854 GMYVLLYDKT 863 (876)
T ss_dssp TCCEEECCTT
T ss_pred hheeecCCCc
Confidence 5555555544
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-47 Score=427.12 Aligned_cols=458 Identities=19% Similarity=0.197 Sum_probs=296.5
Q ss_pred cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
+++|+++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46777777766 3555554 67777777777777666666777777777777777777666666777777777777777
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCCccccCCCCC--Cceeecccccccc
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL--GILYLYSNSLSGP 266 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~~~ 266 (725)
.++ .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence 666 34443 56666666666666654 345556666666666666665553 234444444 555555555400
Q ss_pred CCccccCCCCCCEEEccCCccccccCCCCCCCC-CccEEEccCCcCcccCc-ccccCCCccccccccccc-------ccc
Q 041178 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLS-SLTVMSLFSNSLSSFIP-PILGNLKSLSALGLHINQ-------LNG 337 (725)
Q Consensus 267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-------l~~ 337 (725)
.+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|. +.+
T Consensus 153 ---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 153 ---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp ---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 333444443333 22234455555444333 245556666666666665 454
Q ss_pred cCCccCcCCCCCCEEEccCCcCccCCccccc---CCCCCCEEECcCccccccccccc-----cCCCCCcEEEcCCCcCCC
Q 041178 338 VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG---YLKSIFELELCTNRLRGGIPHSI-----GNLTELVLVNMCENHLSG 409 (725)
Q Consensus 338 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~ 409 (725)
.+| .+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.++|.+|..+ ..+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 444 566677777777777766543222111 13456666666666666666555 4555555555555554
Q ss_pred CCC-ccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc
Q 041178 410 PIP-KSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG 488 (725)
Q Consensus 410 ~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~ 488 (725)
.+| ..+..+ ....+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+.
T Consensus 289 ~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 289 GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CSCTHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred ecchhhhhcc---------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence 233 222211 00134555566555554321 114566777777777777776777777
Q ss_pred ccCCCcEEEccCCcccc--cCchhhhcCCCCCeEeccCceecCCCCc-cccCccccccccccccccccccccccccCCCC
Q 041178 489 ESFKLQVLDISSNHIVG--EIPVQLAKLFSLNKLILSLNQLSGGMPF-ELGSLTELQYLDLSANKLRSWIPKSIGNLLKL 565 (725)
Q Consensus 489 ~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 565 (725)
.+++|++|++++|++.+ .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L 423 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence 77888888888888876 5667788888899999999998875654 477889999999999999887776654 789
Q ss_pred CEEeCCCCcCcccChhhhhcccccccccccccccCccCccc-ccCCCCCCEEeCCCCccccccC
Q 041178 566 RYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ-ICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 566 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p 628 (725)
++|++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|++|++++|++++..+
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999997 788888899999999999999975 5554 8999999999999999987644
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-47 Score=427.64 Aligned_cols=457 Identities=21% Similarity=0.203 Sum_probs=309.1
Q ss_pred CEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCC
Q 041178 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNN 213 (725)
Q Consensus 134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 213 (725)
++||+++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------ 67 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF------------ 67 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT------------
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc------------
Confidence 35666666666 3554443 55555555555555444445555555555555555554444444444
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc-cCCccccCCCCCCEEEccCCccccccC
Q 041178 214 LLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG-PIPSVIGNLESLLQLDLSENQLSGSIP 292 (725)
Q Consensus 214 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p 292 (725)
+++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++
T Consensus 68 ------------l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--- 129 (520)
T 2z7x_B 68 ------------NQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--- 129 (520)
T ss_dssp ------------CTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---
T ss_pred ------------ccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---
Confidence 444444444444444 23332 44455555555555544 244555555666666666665553
Q ss_pred CCCCCCCCc--cEEEccCCcC--cccCcccccCCC-cccccccccccccccCCc-cCcCCCCCCEEEccCCc-------C
Q 041178 293 ISLGNLSSL--TVMSLFSNSL--SSFIPPILGNLK-SLSALGLHINQLNGVIPS-SIGNLSNLRLLYLYNNG-------F 359 (725)
Q Consensus 293 ~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l 359 (725)
..+..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|. +
T Consensus 130 ~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence 234445555 8888888888 666776666554 233456666666554443 45566667777776665 3
Q ss_pred ccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccc
Q 041178 360 YGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAF 439 (725)
Q Consensus 360 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 439 (725)
.+.++ .+..+++|+.|++++|.+.+..+..+. ... ..++|+.|++++|++++.+|..+
T Consensus 210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~--------------------~~~-~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRIL--------------------QLV-WHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHH--------------------HHH-HTSSCSEEEEEEEEEESCCCCCC
T ss_pred ecchh-hhccccchhhccccccccCHHHHHHHH--------------------HHh-hhCcccEEEeecccccCccccch
Confidence 33333 444555555555555554432221110 000 12356666666666665566555
Q ss_pred -----cCCCCCCEEeCcCCccccccC-ccccCC---CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchh
Q 041178 440 -----GYHPNLTFLDLSQNNFYGEIS-FNWRNF---PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ 510 (725)
Q Consensus 440 -----~~~~~L~~L~ls~n~l~~~~~-~~~~~~---~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 510 (725)
..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence 6777888888888877 344 333333 67999999999986432 1267899999999999999999999
Q ss_pred hhcCCCCCeEeccCceecC--CCCccccCcccccccccccccccccccc-ccccCCCCCEEeCCCCcCcccChhhhhccc
Q 041178 511 LAKLFSLNKLILSLNQLSG--GMPFELGSLTELQYLDLSANKLRSWIPK-SIGNLLKLRYLNLSNNQFIQKIPIEVEKLI 587 (725)
Q Consensus 511 ~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 587 (725)
+..+++|++|++++|++++ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.+|..+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 9999999999999999997 5667899999999999999999985554 588999999999999999988887664 7
Q ss_pred ccccccccccccCccCcccccCCCCCCEEeCCCCccccccCcc-ccCCCCCCEEeCcCCCccccCCC
Q 041178 588 HLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC-FEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
+|++|++++|+++ .+|..+..+++|++|++++|++++ +|.. |..+++|++|++++|++++.++.
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999999996 788888899999999999999995 5554 99999999999999999987764
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-44 Score=408.98 Aligned_cols=531 Identities=20% Similarity=0.188 Sum_probs=409.1
Q ss_pred cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
++.+-++-+++ .+|..+. +++++|||++|.+++..|.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34566665554 4565442 47899999999999777788999999999999999999777788999999999999999
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCC
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIP 268 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p 268 (725)
++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 9987766778999999999999999988777788999999999999999875 457778888999999999999888777
Q ss_pred ccccCCCC----CCEEEccCCccccccCCCCCCCCCccEEEccCCcCccc-CcccccCCCcccccccccccccccCCccC
Q 041178 269 SVIGNLES----LLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF-IPPILGNLKSLSALGLHINQLNGVIPSSI 343 (725)
Q Consensus 269 ~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 343 (725)
..+..+.+ ...++++.|.+....+. ......++.+++.+|..... .+..+..+..++...+..+.....
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~----- 264 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----- 264 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS-----
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc-----
Confidence 77665443 34677888888754443 33445567777777654432 222344444444444333222111
Q ss_pred cCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccc---ccccccccCCCCCcEEEcCCCcCCCCCCccccCCCC
Q 041178 344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLR---GGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTS 420 (725)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 420 (725)
..+.......+.....+...++..+... ...+..+....+++.+++..+.+.... .+.....
T Consensus 265 -------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~ 329 (635)
T 4g8a_A 265 -------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFG 329 (635)
T ss_dssp -------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCC
T ss_pred -------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchh
Confidence 0111112222333344444444433222 234455667788999999888876543 3566788
Q ss_pred CcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc--cCCccccccCCCcEEEc
Q 041178 421 LERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG--SIPLEIGESFKLQVLDI 498 (725)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~L 498 (725)
++.|++.+|.+.+.... .++.|+.+++.+|..... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++
T Consensus 330 L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp CSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 99999999998766554 357889999999887643 344578999999999998854 45667778899999999
Q ss_pred cCCcccccCchhhhcCCCCCeEeccCceecCCCC-ccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc-
Q 041178 499 SSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMP-FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI- 576 (725)
Q Consensus 499 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 576 (725)
+.|.... .+..+..+++|+.++++++......+ ..+..+++++.++++.|.+.+..+..+..+++|+.|++++|++.
T Consensus 405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred ccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence 9998764 44567889999999999998876554 56788999999999999999999999999999999999999854
Q ss_pred ccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCC--
Q 041178 577 QKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS-- 654 (725)
Q Consensus 577 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-- 654 (725)
+.+|..+..+++|++|+|++|++++.+|..|+++++|++|+|++|++++..|..|..+++|++||+++|++++..|..
T Consensus 484 ~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 457888999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred ---CCcCceeccCCCCCCC
Q 041178 655 ---TTFKDARMEGNKGLCG 670 (725)
Q Consensus 655 ---~~~~~~~~~gn~~lc~ 670 (725)
..++.+.+.|||+-|.
T Consensus 564 ~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCTTCCEEECTTCCBCCS
T ss_pred hhhCcCCEEEeeCCCCccc
Confidence 2355568999999995
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.1e-44 Score=400.30 Aligned_cols=463 Identities=20% Similarity=0.188 Sum_probs=285.6
Q ss_pred CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF 208 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 208 (725)
.+...+++++++|.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34455899999999984 777664 889999999999988777888999999999999999888878888888999999
Q ss_pred EccCCcCCccCccccCCCCCCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCCccccCCCCC--CEEEccCC
Q 041178 209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESL--LQLDLSEN 285 (725)
Q Consensus 209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n 285 (725)
++++|.+. .+|.. .+++|++|++++|++++ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 99998886 45654 78888888888888876 3457788888888888888877653 33444444 77777777
Q ss_pred cc--ccccCCCCCCCC-CccEEEccCCcCcccCcc-cccCCCccccccccccc-----ccccCCccCcCCCCCCEEEccC
Q 041178 286 QL--SGSIPISLGNLS-SLTVMSLFSNSLSSFIPP-ILGNLKSLSALGLHINQ-----LNGVIPSSIGNLSNLRLLYLYN 356 (725)
Q Consensus 286 ~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~-----l~~~~~~~l~~l~~L~~L~L~~ 356 (725)
.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+ +.+. ...+..+++|+.+++.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecC
Confidence 77 666666555443 111445566665554332 34455566666666553 1111 11234444555555444
Q ss_pred CcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccc-----cCCCCCcEEECcCccc
Q 041178 357 NGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSL-----RNLTSLERVRFNQNNL 431 (725)
Q Consensus 357 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l 431 (725)
+.+.+. .+.+ ++..+ ...+|++|++++|.++|.+|..+ ..++.|+.+++..+.+
T Consensus 259 ~~l~~~-------------------~~~~-~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~ 317 (562)
T 3a79_B 259 IETTWK-------------------CSVK-LFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317 (562)
T ss_dssp EEECHH-------------------HHHH-HHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred CcCcHH-------------------HHHH-HHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence 433221 1111 11111 12255555555555555555444 3344444444444433
Q ss_pred ccccc-cccc---CCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccC
Q 041178 432 SGKVY-EAFG---YHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEI 507 (725)
Q Consensus 432 ~~~~~-~~~~---~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 507 (725)
.+| ..+. ...+|++|++++|.+.... + ...+++|++|++++|++++..
T Consensus 318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~-----------------------~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 318 --LFSKEALYSVFAEMNIKMLSISDTPFIHMV---C-----------------------PPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp --SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---C-----------------------CSSCCCCCEEECCSSCCCTTT
T ss_pred --ecChhhhhhhhccCcceEEEccCCCccccc---C-----------------------ccCCCCceEEECCCCccccch
Confidence 112 1111 1134666666665543211 1 123344555555555555444
Q ss_pred chhhhcCCCCCeEeccCceecCC--CCccccCccccccccccccccccccc-cccccCCCCCEEeCCCCcCcccChhhhh
Q 041178 508 PVQLAKLFSLNKLILSLNQLSGG--MPFELGSLTELQYLDLSANKLRSWIP-KSIGNLLKLRYLNLSNNQFIQKIPIEVE 584 (725)
Q Consensus 508 ~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 584 (725)
|..+..+++|++|++++|++++. +|..+..+++|++|++++|++.+.+| ..+..+++|++|++++|++++.+|..+.
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 55555555555555555555542 23445566666666666666665333 3466667777777777777666655443
Q ss_pred cccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCcc-ccCCCCCCEEeCcCCCccccCCCC
Q 041178 585 KLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRC-FEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 585 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
++|++|+|++|+++ .+|..+..+++|++|++++|++++ +|.. |..+++|++|++++|++.+.+|..
T Consensus 450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 57788888888875 566666688888888888888884 5554 888888999999999988877643
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-43 Score=399.90 Aligned_cols=463 Identities=20% Similarity=0.201 Sum_probs=316.9
Q ss_pred CCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 041178 106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA 185 (725)
Q Consensus 106 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 185 (725)
....+++++++|.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3445999999999986 776654 8999999999999988888999999999999999999988899999999999999
Q ss_pred cCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc-cCccccCCCCCCCEEEccCCcCcccCCccccCCCCC--Cceeecccc
Q 041178 186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD-SIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL--GILYLYSNS 262 (725)
Q Consensus 186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~ 262 (725)
+++|.++ .+|.. .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9999998 56666 89999999999999987 4578999999999999999999863 45556666 999999999
Q ss_pred c--cccCCccccCCC-CCCEEEccCCccccccCC-CCCCCCCccEEEccCCcC-----cccCcccccCCCcccccccccc
Q 041178 263 L--SGPIPSVIGNLE-SLLQLDLSENQLSGSIPI-SLGNLSSLTVMSLFSNSL-----SSFIPPILGNLKSLSALGLHIN 333 (725)
Q Consensus 263 l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l-----~~~~~~~l~~l~~L~~L~l~~n 333 (725)
+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.. .+. ...+..+++|+.+++.++
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCC
Confidence 9 888888887765 122567888888765543 356788999999999852 222 235677888888888877
Q ss_pred cccccC----CccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCC
Q 041178 334 QLNGVI----PSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409 (725)
Q Consensus 334 ~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 409 (725)
.+.+.. +..+ ..++|++|++++|.++|.+|..+.... ...++.|+.+++..+.+
T Consensus 260 ~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~-------------------~~~L~~L~~~~~~~~~~-- 317 (562)
T 3a79_B 260 ETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYS-------------------ETALKSLMIEHVKNQVF-- 317 (562)
T ss_dssp EECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCC-------------------SCSCCEEEEEEEEECCC--
T ss_pred cCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcc-------------------cccchheehhhccccee--
Confidence 665421 1111 224677777777777766666541100 02233333333333333
Q ss_pred CCC-ccccC---CCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCc
Q 041178 410 PIP-KSLRN---LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPL 485 (725)
Q Consensus 410 ~~p-~~l~~---l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~ 485 (725)
.+| ..+.. ..+|+.|++++|.+..... ...+++|++|++++|++++..|..+..+++|+.|++++|++++..
T Consensus 318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-- 393 (562)
T 3a79_B 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-- 393 (562)
T ss_dssp SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT--
T ss_pred ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc--
Confidence 122 11111 1345666666665542221 135566777777777666555555555554444444444443210
Q ss_pred cccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCc-cccCccccccccccccccccccccccccCCC
Q 041178 486 EIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPF-ELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564 (725)
Q Consensus 486 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 564 (725)
.+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++
T Consensus 394 --------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 394 --------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp --------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred --------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 1233445555566666666666553332 355667777777777777665554443 57
Q ss_pred CCEEeCCCCcCcccChhhhhcccccccccccccccCccCccc-ccCCCCCCEEeCCCCccccccC
Q 041178 565 LRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQ-ICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 565 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p 628 (725)
|++|++++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|+.|++++|++.+..|
T Consensus 452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 778888888776 566666677888888888888864 4444 7788888888888888876544
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-42 Score=358.45 Aligned_cols=292 Identities=29% Similarity=0.494 Sum_probs=222.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc--cCcceeCCC---CCEEEEEcCCCCCcc-
Q 041178 23 SYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCA--WVGISCNQA---ERIISINLSSMGLNG- 96 (725)
Q Consensus 23 ~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~--w~gv~C~~~---~~v~~l~l~~~~l~~- 96 (725)
.|.++|++||++||+++.++ ..+++|. .+ .+||. |.||+|+.. ++|+.++++++.+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~--~~l~~W~---~~-----------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP--TTLSSWL---PT-----------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC--GGGTTCC---TT-----------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCc--ccccCCC---CC-----------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence 47889999999999999643 2688995 33 68998 999999853 789999999988887
Q ss_pred -ccCCcccCCCCCCcEEECCC-CCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCcc
Q 041178 97 -TLQEFAFSSFPHLVHLNLSF-NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQE 174 (725)
Q Consensus 97 -~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 174 (725)
.++ ..+..+++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|..
T Consensus 66 ~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 66 YPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp EECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 676 5778888888888884 7777788888888888888888888888778888888888888888888887777777
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCCCcCCCC-CCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 041178 175 IGQLSLINELALCHNNLYGPIPPSLGNLS-NLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNL 253 (725)
Q Consensus 175 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 253 (725)
+.++++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+++..|..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 77788888888888877777777777776 777777777777777777777666 7777777777777777777777777
Q ss_pred CceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccc
Q 041178 254 GILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHIN 333 (725)
Q Consensus 254 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 333 (725)
++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 7777777777655554 566667777777777776666666666777777777777776666654 56666666666666
Q ss_pred c
Q 041178 334 Q 334 (725)
Q Consensus 334 ~ 334 (725)
.
T Consensus 302 ~ 302 (313)
T 1ogq_A 302 K 302 (313)
T ss_dssp S
T ss_pred C
Confidence 5
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.8e-41 Score=368.52 Aligned_cols=387 Identities=21% Similarity=0.208 Sum_probs=282.3
Q ss_pred ceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccC-cccccCCCcccccccccc
Q 041178 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFI-PPILGNLKSLSALGLHIN 333 (725)
Q Consensus 255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n 333 (725)
.++.+++.++ .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3555555555 3444 2 256788888888887777777777888888888887776443 456777777777777777
Q ss_pred cccccCCccCcCCCCCCEEEccCCcCccCCccc--ccCCCCCCEEECcCcccccccccc-ccCCCCCcEEEcCCCcCCCC
Q 041178 334 QLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEE--IGYLKSIFELELCTNRLRGGIPHS-IGNLTELVLVNMCENHLSGP 410 (725)
Q Consensus 334 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 410 (725)
++.+..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 777776777777777777777777776644443 666777777777777777665654 66677777777777777766
Q ss_pred CCccccCC--CCCcEEECcCccccccccccc--------cCCCCCCEEeCcCCccccccCccccCC---CCCcEEECCCC
Q 041178 411 IPKSLRNL--TSLERVRFNQNNLSGKVYEAF--------GYHPNLTFLDLSQNNFYGEISFNWRNF---PKLGTFIVSMN 477 (725)
Q Consensus 411 ~p~~l~~l--~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~ls~n~l~~~~~~~~~~~---~~L~~L~l~~n 477 (725)
.+..+..+ .+|+.+++++|.+.+..+..+ ..+++|++|++++|++++..+..+... ++++.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 66666554 456666666666655443322 233455555555555555444433222 44555555554
Q ss_pred cccccCCccccccCCCcEEEccCCcccccCchhhhc--CCCCCeEeccCceecCCCCccccCcccccccccccccccccc
Q 041178 478 NISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAK--LFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWI 555 (725)
Q Consensus 478 ~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 555 (725)
...+.. +..+.+.+..+..+.. .++|++|++++|.+++..|..+..+++|++|++++|++.+..
T Consensus 250 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 250 YNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred cccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 433211 0111222222233333 368999999999999999999999999999999999999988
Q ss_pred ccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCC
Q 041178 556 PKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMH 635 (725)
Q Consensus 556 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 635 (725)
|..|.++++|++|++++|.+.+..|..++.+++|++|+|++|.+++..|..+..+++|++|++++|++++..+..|..++
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999987777889999
Q ss_pred CCCEEeCcCCCccccCCCCCCcCc
Q 041178 636 NLSHIDISYNELQGPIPNSTTFKD 659 (725)
Q Consensus 636 ~L~~L~ls~N~l~g~ip~~~~~~~ 659 (725)
+|++|++++|++++.+|....+..
T Consensus 396 ~L~~L~l~~N~l~~~~~~~~~l~~ 419 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCPRIDYLSR 419 (455)
T ss_dssp TCCEEECCSSCBCCCTTTTHHHHH
T ss_pred cccEEEccCCCcccCCCcchHHHH
Confidence 999999999999999996554433
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-41 Score=367.62 Aligned_cols=421 Identities=26% Similarity=0.269 Sum_probs=218.0
Q ss_pred CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF 208 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 208 (725)
..++|++|++++|.+ |.+|.+++++++|++|++++|.+.|.+|.+++++++|+.+++..|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 357788888888888 67787888888888888888887777787777777766665555431 356677
Q ss_pred EccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccc
Q 041178 209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288 (725)
Q Consensus 209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 288 (725)
++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|+++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 777776654 3331 2567777777777775 5543 3667777777777764 2221 157778888888777
Q ss_pred cccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCccccc
Q 041178 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG 368 (725)
Q Consensus 289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 368 (725)
+ +| .++++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .+..+++|+.|++++|.+++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 5 56 47777778888887777776 34332 466777777777664 44 46666677777777766654 2221
Q ss_pred CCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEE
Q 041178 369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFL 448 (725)
Q Consensus 369 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 448 (725)
.++|++|++++|.++ .+| .+..+++|+.|++++|.+++ +|.. .++|++|
T Consensus 214 -~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L 262 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---------------------------PPSLEAL 262 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---------------------------CTTCCEE
T ss_pred -cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---------------------------ccccCEE
Confidence 135555566555555 344 24555555555555555543 2221 2445555
Q ss_pred eCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcC-CCCCeEeccCcee
Q 041178 449 DLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKL-FSLNKLILSLNQL 527 (725)
Q Consensus 449 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~L~~L~L~~n~l 527 (725)
++++|++++ +|.. +++|+.|++++|++++. |. ..++|++|++++|++++. + .+ ++|++|++++|++
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKL 329 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCC
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcc
Confidence 555555543 2221 24555556655555541 11 014677777777776642 1 22 4788888888888
Q ss_pred cCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcc--cChhhhhcccccccccccccccCccCcc
Q 041178 528 SGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ--KIPIEVEKLIHLSKLDLSYNFLGKEMPF 605 (725)
Q Consensus 528 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 605 (725)
++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|.+++.+ +.|.+.+.+|.
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~ 393 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE 393 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------
T ss_pred cc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc
Confidence 75 5543 5788888888888886 555 46889999999999888 677765543 44667777775
Q ss_pred cccCCCCCCEEeCCCCcccc--ccCccccCCCCCCEEeCcCCCccccCCC
Q 041178 606 QICNMKSLEKLNLCHNNLSG--FIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 606 ~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
. +++|++|++++|++++ .+|.+ ++.|.+.+|.+.+.+|.
T Consensus 394 ~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 394 L---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp --------------------------------------------------
T ss_pred c---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 3 5789999999999987 66654 56667888888887764
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-40 Score=364.16 Aligned_cols=382 Identities=23% Similarity=0.191 Sum_probs=265.3
Q ss_pred EEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccC-CccccCCCCCCEEEccCC
Q 041178 207 NFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI-PSVIGNLESLLQLDLSEN 285 (725)
Q Consensus 207 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n 285 (725)
.++.+++.+. .+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555553 3443 2 256777777777777666666777777777777777665443 445666777777777777
Q ss_pred ccccccCCCCCCCCCccEEEccCCcCcccCccc--ccCCCcccccccccccccccCCcc-CcCCCCCCEEEccCCcCccC
Q 041178 286 QLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPI--LGNLKSLSALGLHINQLNGVIPSS-IGNLSNLRLLYLYNNGFYGF 362 (725)
Q Consensus 286 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~ 362 (725)
++++..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|++.+..|.. +.++++|++|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 776666666666677777777766666543332 555555666666655555544443 45555555555555555555
Q ss_pred CcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCcc--------ccCCCCCcEEECcCcccccc
Q 041178 363 VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKS--------LRNLTSLERVRFNQNNLSGK 434 (725)
Q Consensus 363 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--------l~~l~~L~~L~l~~n~l~~~ 434 (725)
.+..+..+. ..+|+.+++++|.+.+..+.. +..+++|+.|++++|++++.
T Consensus 170 ~~~~l~~l~----------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 170 CEEDLLNFQ----------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp CTTTSGGGT----------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred Chhhhhccc----------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 444443330 034445555555444433222 22456677777777777666
Q ss_pred ccccccC---CCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc--ccCCCcEEEccCCcccccCch
Q 041178 435 VYEAFGY---HPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG--ESFKLQVLDISSNHIVGEIPV 509 (725)
Q Consensus 435 ~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~ 509 (725)
.+..+.. .++|+.|++++|...+... ..+.+.+..+..+. ..++|++|++++|.+.+..|.
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred chhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchh
Confidence 6655433 3677788888776654321 11112222222222 236899999999999988899
Q ss_pred hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccc
Q 041178 510 QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHL 589 (725)
Q Consensus 510 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 589 (725)
.+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 99999999999999999998888899999999999999999999888999999999999999999999999999999999
Q ss_pred ccccccccccCccCcccccCCCCCCEEeCCCCccccccC
Q 041178 590 SKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 590 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 628 (725)
++|+|++|++++..+..+..+++|++|++++|++++..|
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999988777788999999999999999998877
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.1e-40 Score=355.36 Aligned_cols=415 Identities=25% Similarity=0.290 Sum_probs=190.9
Q ss_pred cCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCC-------------CEEEccCCcCCC
Q 041178 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQL-------------RSLYFDVNQLHG 169 (725)
Q Consensus 103 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~ 169 (725)
-.+.++|++|++++|.+ |.+|++++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 34568999999999999 8999999999999999999999999999999999876 666666666653
Q ss_pred CCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccC
Q 041178 170 PIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGN 249 (725)
Q Consensus 170 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 249 (725)
+|.. .++|++|++++|.+++ +|+. .++|++|++++|.+.+ +|.. .++|++|++++|++++ +| .+++
T Consensus 86 -lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 86 -LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp -CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred -CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 2321 2456666666666664 4432 2556666666665543 2211 1456666666666654 44 3555
Q ss_pred CCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccc
Q 041178 250 LSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALG 329 (725)
Q Consensus 250 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 329 (725)
+++|++|++++|.+++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|.+++ +|... ++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEE
Confidence 6666666666665553 33322 355566666555554 33 35555555555555555554 22211 3455555
Q ss_pred cccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCC
Q 041178 330 LHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSG 409 (725)
Q Consensus 330 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 409 (725)
+++|.+. .+| .+..+++|++|++++|++++ +|.. .++|+.|++++|.+++
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-------------------------l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-------------------------LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-------------------------CCSC---CTTCCEEECCSSCCSC
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-------------------------cccc---ccccCEEECCCCcccc
Confidence 5555544 333 24445555555555554443 2221 2445555555555544
Q ss_pred CCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccc
Q 041178 410 PIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGE 489 (725)
Q Consensus 410 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~ 489 (725)
+|.. .++|+.|++++|++++... ..++|++|++++|++++. +. ..++|+.|++++|++++ +|..
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred -cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---
Confidence 2322 2455566666665554211 114666666666666542 11 11466777777777664 4443
Q ss_pred cCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC--CCCccccCccccccccccccccccccccccccCCCCCE
Q 041178 490 SFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG--GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY 567 (725)
Q Consensus 490 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 567 (725)
+++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+.. ++.|.+.+.+|.. +++|++
T Consensus 336 ~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~ 400 (454)
T 1jl5_A 336 PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQ 400 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-----------------
T ss_pred CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCE
Confidence 4677777777777764 444 36778888888888876 55655432 2345555655542 467888
Q ss_pred EeCCCCcCcc--cChhhhhcccccccccccccccCccCcccccC
Q 041178 568 LNLSNNQFIQ--KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609 (725)
Q Consensus 568 L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 609 (725)
|++++|++++ .+|. +++.|.+.+|.+.+.+|.....
T Consensus 401 L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 401 LHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp --------------------------------------------
T ss_pred EECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 8888888876 5664 3556677888887776655443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.4e-38 Score=341.13 Aligned_cols=210 Identities=19% Similarity=0.201 Sum_probs=121.3
Q ss_pred ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI 181 (725)
Q Consensus 102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 181 (725)
.++.+++|++|++++|.+.+. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. | ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 456667777777777777653 4 567777777777777777753 3 66677777777777776653 2 6666777
Q ss_pred CEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccc
Q 041178 182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261 (725)
Q Consensus 182 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 261 (725)
++|++++|.+++. | +..+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|++|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 7777777766652 2 56666666666666666552 2 556666666666666443333 2445555555555555
Q ss_pred cccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccccc
Q 041178 262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLN 336 (725)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (725)
.+++ +| ++.+++|++|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++++|+++
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 5554 22 44555555555555555432 24444555555555555444 22 344444444444444444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.6e-38 Score=341.57 Aligned_cols=365 Identities=17% Similarity=0.162 Sum_probs=233.8
Q ss_pred CCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCC
Q 041178 119 VFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPS 198 (725)
Q Consensus 119 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 198 (725)
..+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3445556788889999999999998864 5 688899999999999988864 3 78888889999988888864 3
Q ss_pred cCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCC
Q 041178 199 LGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLL 278 (725)
Q Consensus 199 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 278 (725)
++++++|++|++++|.+.+ +| ++.+++|++|++++|++++. .++.+++|++|++++|...+.+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 7788888888888888866 33 77888888888888888763 3677777777777777555444 366677777
Q ss_pred EEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCc
Q 041178 279 QLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG 358 (725)
Q Consensus 279 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 358 (725)
+|++++|++++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|+
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 77777777765 33 56667777777777776664 25555666666666666654 33 5555555666665555
Q ss_pred CccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcccccccccc
Q 041178 359 FYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEA 438 (725)
Q Consensus 359 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 438 (725)
+++.. +..+++|+.|++++| + |+.+++++|.+.+.+|
T Consensus 245 l~~~~---~~~l~~L~~L~l~~n--------------~------------------------L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 245 LTELD---VSTLSKLTTLHCIQT--------------D------------------------LLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp CSCCC---CTTCTTCCEEECTTC--------------C------------------------CSCCCCTTCTTCCEEE--
T ss_pred CCCcC---HHHCCCCCEEeccCC--------------C------------------------CCEEECCCCccCCccc--
Confidence 55432 223344444444332 2 2333444444443333
Q ss_pred ccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCC
Q 041178 439 FGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLN 518 (725)
Q Consensus 439 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 518 (725)
+..+++|++|++++|...+.+|. ..++|+.+++++| ++|++|++++|++++. + +..+++|+
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~ 342 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLK 342 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence 23445555555555555544443 2233444433332 4566666666666653 2 56666677
Q ss_pred eEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhh
Q 041178 519 KLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEV 583 (725)
Q Consensus 519 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 583 (725)
.|++++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..+
T Consensus 343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 77777776664 24556666777766663 234456666666666666666543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-36 Score=330.43 Aligned_cols=346 Identities=28% Similarity=0.385 Sum_probs=211.5
Q ss_pred CCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccc
Q 041178 249 NLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSAL 328 (725)
Q Consensus 249 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 328 (725)
.+++++.|++.++.+.. +| .+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35667777777777663 34 36667777777777777765433 6777777777777777766544 6667777777
Q ss_pred ccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178 329 GLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408 (725)
Q Consensus 329 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 408 (725)
++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|++. |.+.+.. .+..+++|+.|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 777777664322 66667777777777666542 2 35566666666664 3333222 1555555555555555554
Q ss_pred CCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc
Q 041178 409 GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG 488 (725)
Q Consensus 409 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~ 488 (725)
+. ..+..+++|+.|++++|.+++..+ ++.+++|+.|++++|.+.+. ..+.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--------------------------~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--------------------------ccccCCCCEEECCCCCcccc--hhhh
Confidence 32 224444555555555554444333 33444555555555544432 2345
Q ss_pred ccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEE
Q 041178 489 ESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYL 568 (725)
Q Consensus 489 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 568 (725)
.+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 55666666666666655444 5566666666666666664333 5666667777777776666433 5666777777
Q ss_pred eCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178 569 NLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 569 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
++++|++++..| ++.+++|++|++++|.+++. ..+.++++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 777777666554 56667777777777777554 256677777777777777776665 666777777777777776
Q ss_pred c
Q 041178 649 G 649 (725)
Q Consensus 649 g 649 (725)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 5
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-35 Score=325.32 Aligned_cols=347 Identities=29% Similarity=0.400 Sum_probs=216.1
Q ss_pred cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207 (725)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 207 (725)
..++++++|+++++.+.. +| .+..+++|++|++++|.+++..| +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346788999999988874 55 47788899999999998885543 8888888999888888886544 788888888
Q ss_pred EEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcc
Q 041178 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287 (725)
Q Consensus 208 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 287 (725)
|++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|++|++. |.+.+.. .+.++++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 8888888766433 77888888888888877742 2 47777777777775 3443322 266677777777777766
Q ss_pred ccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccc
Q 041178 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEI 367 (725)
Q Consensus 288 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 367 (725)
++. ..+..+++|++|++++|.+++..+ ++.+++|+.|++++|++.+. ..+..+++|+.|++++|.+.+.
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~----- 258 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL----- 258 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-----
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-----
Confidence 532 235556666666666666655433 44455555555555555432 2344444444444444444433
Q ss_pred cCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCE
Q 041178 368 GYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTF 447 (725)
Q Consensus 368 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 447 (725)
.+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++
T Consensus 259 -------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 259 -------------------AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp -------------------GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred -------------------hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 22 3444445555555554443322 4445555555555555544333 445556666
Q ss_pred EeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCcee
Q 041178 448 LDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQL 527 (725)
Q Consensus 448 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 527 (725)
|++++|++++..+ +..+++|+.|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 6666665555443 44555666666666655543 345566666666776666666655 66666777777777776
Q ss_pred cC
Q 041178 528 SG 529 (725)
Q Consensus 528 ~~ 529 (725)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=339.31 Aligned_cols=322 Identities=20% Similarity=0.211 Sum_probs=175.1
Q ss_pred cEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCc
Q 041178 302 TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTN 381 (725)
Q Consensus 302 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 381 (725)
+.++.+++.++. +|..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 355666665554 343332 45666666666666655666666666666666666666665666666666666666666
Q ss_pred cccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCc
Q 041178 382 RLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF 461 (725)
Q Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 461 (725)
.+++..+..|.++++|+.|++++|.+.+..+..+.++++|+.|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 66644444555566666666666666555555555556666666666655555555555555555555555555544444
Q ss_pred cccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccc
Q 041178 462 NWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTEL 541 (725)
Q Consensus 462 ~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 541 (725)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|+++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~------------- 237 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT------------- 237 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-------------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-------------
Confidence 4555555555555555555544445555555555555555544444444333344455555554444
Q ss_pred ccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 542 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 621 (725)
+..+..+..+++|++|+|++|++.+..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 238 -----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 238 -----------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp -----------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred -----------ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 433334444455555555555544444444444555555555555554444445555555555555555
Q ss_pred ccccccCccccCCCCCCEEeCcCCCcccc
Q 041178 622 NLSGFIPRCFEGMHNLSHIDISYNELQGP 650 (725)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 650 (725)
++++..+..|..+++|++|++++|++.+.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 55544444445555555555555555443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=327.24 Aligned_cols=320 Identities=22% Similarity=0.188 Sum_probs=176.9
Q ss_pred ceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccccc
Q 041178 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQ 334 (725)
Q Consensus 255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 334 (725)
.++.+++.++ .+|..+. +++++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3444445444 3444332 356666666666665555566666666666666666665555556666666666666666
Q ss_pred ccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCcc
Q 041178 335 LNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKS 414 (725)
Q Consensus 335 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 414 (725)
+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 55444444555555666666555555555555555555555555555555544555555555555555555555444444
Q ss_pred ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCc
Q 041178 415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ 494 (725)
Q Consensus 415 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 494 (725)
+.++++|+.|++++|.+.+..+.. +..+++|+.|++++|...+.+|.......+|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYS------------------------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTC------------------------SCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred hcccCCCcEEeCCCCcCcEeChhh------------------------cccCcccceeeCCCCccccccCcccccCcccc
Confidence 444555555555555444444444 44445555555554444444444444444566
Q ss_pred EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCc
Q 041178 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574 (725)
Q Consensus 495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 574 (725)
+|++++|++++..+..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++.+..|..|.++++|++|++++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 66666665554444455556666666666666655555555556666666666666665555556666666666666666
Q ss_pred CcccChhhhhcccccccccccccccCc
Q 041178 575 FIQKIPIEVEKLIHLSKLDLSYNFLGK 601 (725)
Q Consensus 575 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 601 (725)
+++..+..|..+++|++|+|++|.+..
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CceeCHhHcCCCcccCEEEccCCCccC
Confidence 655555555555666666666665543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-34 Score=310.07 Aligned_cols=290 Identities=19% Similarity=0.183 Sum_probs=221.1
Q ss_pred CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178 104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..++++++|+++++.+....+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..|..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45789999999999887665566889999999999999999888889999999999999999999888888999999999
Q ss_pred EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178 184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL 263 (725)
Q Consensus 184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (725)
|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999999855555568999999999999999888888899999999999999998854 366778888899888887
Q ss_pred cccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccC
Q 041178 264 SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI 343 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 343 (725)
++. ...++|++|++++|.+... |.. ..++|++|++++|.+++. .++..+++|++|++++|.+.+..|..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 642 3345788888888888754 332 246788888888877764 456667777777777777776666667
Q ss_pred cCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178 344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408 (725)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 408 (725)
..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 777777777777776654 2334445556666666666555 34444445555555555555554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-34 Score=321.84 Aligned_cols=311 Identities=18% Similarity=0.198 Sum_probs=238.2
Q ss_pred CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178 104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..+++++.+++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35689999999999987776777899999999999999999888889999999999999999999888888999999999
Q ss_pred EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178 184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL 263 (725)
Q Consensus 184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (725)
|++++|.+++..+..+..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++. .++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999999966666678999999999999999988888899999999999999999864 356778899999998887
Q ss_pred cccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccC
Q 041178 264 SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSI 343 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 343 (725)
++ +...++|+.|++++|.++...+ .+ .++|+.|++++|.+++. .++..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 64 2344678888888888875433 22 26788888888888763 566777777777777777777777777
Q ss_pred cCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcE
Q 041178 344 GNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLER 423 (725)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 423 (725)
..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.. +..+++|+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 777777777777777765 3444455666666666666665 45555555666666666666555331 333444444
Q ss_pred EECcCcccc
Q 041178 424 VRFNQNNLS 432 (725)
Q Consensus 424 L~l~~n~l~ 432 (725)
|++++|.+.
T Consensus 350 L~l~~N~~~ 358 (597)
T 3oja_B 350 LTLSHNDWD 358 (597)
T ss_dssp EECCSSCEE
T ss_pred EEeeCCCCC
Confidence 444444444
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.3e-35 Score=301.68 Aligned_cols=255 Identities=26% Similarity=0.428 Sum_probs=191.7
Q ss_pred CCcEEECcCccccc--cccccccCCCCCCEEeCcC-CccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEE
Q 041178 420 SLERVRFNQNNLSG--KVYEAFGYHPNLTFLDLSQ-NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVL 496 (725)
Q Consensus 420 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 496 (725)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34455555555554 4555555555566666653 55555566666666666666666666666666666777777777
Q ss_pred EccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcc-ccccccccccccccccccccccCCCCCEEeCCCCcC
Q 041178 497 DISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT-ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575 (725)
Q Consensus 497 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 7777777777777777777777777777777777777777776 788888888888877788887776 88888888888
Q ss_pred cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCC
Q 041178 576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNST 655 (725)
Q Consensus 576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 655 (725)
++.+|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..|..+++|++|++++|+++|.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888888888888888888888777765 7788899999999999998899999999999999999999999999876
Q ss_pred CcCce---eccCCCCCCCCCCCCCCC
Q 041178 656 TFKDA---RMEGNKGLCGNIKGLPSC 678 (725)
Q Consensus 656 ~~~~~---~~~gn~~lc~~~~~~~~c 678 (725)
.+..+ .+.||+++||.|. +.|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~--~~C 312 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL--PAC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS--SCC
T ss_pred cccccChHHhcCCCCccCCCC--CCC
Confidence 55544 7889999999774 455
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5e-34 Score=305.80 Aligned_cols=332 Identities=20% Similarity=0.234 Sum_probs=210.5
Q ss_pred CCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEE
Q 041178 298 LSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377 (725)
Q Consensus 298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 377 (725)
+++++.+++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46677777777777665555566677777777777777666556677777777777777776666666666666666666
Q ss_pred CcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcccc
Q 041178 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG 457 (725)
Q Consensus 378 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 457 (725)
+++|.++...+..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++.. +..+++|+++++++|.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~--- 197 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL--- 197 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC---
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc---
Confidence 6666666333333455666666666666665555555555555555555555554431 2233444555555444
Q ss_pred ccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccC
Q 041178 458 EISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS 537 (725)
Q Consensus 458 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 537 (725)
+++ +...++|++|++++|.+..... ...++|+.|++++|.+++. ..+..
T Consensus 198 ---------------------l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 198 ---------------------LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp ---------------------CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred ---------------------ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC
Confidence 432 1222356666666666553322 1235677777777777643 45677
Q ss_pred ccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEe
Q 041178 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN 617 (725)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 617 (725)
+++|++|++++|.+.+..|..+..+++|++|++++|++++ +|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 7777777777777777777777777788888888887764 4555667778888888888875 4566677788888888
Q ss_pred CCCCccccccCccccCCCCCCEEeCcCCCccccCCCC--CCcCceeccCCCCCCCC
Q 041178 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS--TTFKDARMEGNKGLCGN 671 (725)
Q Consensus 618 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~gn~~lc~~ 671 (725)
+++|+++.. | +..+++|++|++++|++.+..... ..+....+.+++..|..
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence 888888744 3 667788888888888887643211 11222245666666754
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-34 Score=323.31 Aligned_cols=333 Identities=20% Similarity=0.218 Sum_probs=221.6
Q ss_pred CCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEE
Q 041178 298 LSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELE 377 (725)
Q Consensus 298 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 377 (725)
+++++.+++++|.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46677777877777776666667777777777777777766666777777777777777777776666666777777777
Q ss_pred CcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcccc
Q 041178 378 LCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYG 457 (725)
Q Consensus 378 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 457 (725)
+++|.+++..+..|..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 7777666444444566666666666666666655555666666666666666555432 2234455555555554432
Q ss_pred ccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccC
Q 041178 458 EISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGS 537 (725)
Q Consensus 458 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 537 (725)
. ...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..
T Consensus 207 l-----------------------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 207 L-----------------------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp E-----------------------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGG
T ss_pred c-----------------------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhcc
Confidence 1 22335566666666554332221 2467777777777765 355677
Q ss_pred ccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEe
Q 041178 538 LTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLN 617 (725)
Q Consensus 538 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 617 (725)
+++|++|+|++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 7777777887777777777777778888888888887765 4556667778888888888885 5666777788888888
Q ss_pred CCCCccccccCccccCCCCCCEEeCcCCCccccCCCC--CCcCceeccCCCCCCCCC
Q 041178 618 LCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNS--TTFKDARMEGNKGLCGNI 672 (725)
Q Consensus 618 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~gn~~lc~~~ 672 (725)
|++|++++. | +..+++|++|++++|++.+..+.. ..+....+.+++..|+.+
T Consensus 331 L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 331 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence 888888754 2 566778888888888887654321 112222567888888753
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1e-34 Score=302.45 Aligned_cols=284 Identities=19% Similarity=0.268 Sum_probs=197.4
Q ss_pred cCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccccCCc
Q 041178 22 ASYSTKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEF 101 (725)
Q Consensus 22 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~ 101 (725)
+++..+|++||++||+++..++.+.+.+|.... ....++|.|.|+.|+... .. .
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~----------~~~~~~~~~~g~~~~~~~-------------~~---l 75 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----------SNNPQIETRTGRALKATA-------------DL---L 75 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT----------TTCTTSCCSHHHHHHHHH-------------HH---H
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccc----------cccccccccCCcchhhhH-------------HH---H
Confidence 345678999999999998656544556672000 112689999999995210 00 0
Q ss_pred ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI 181 (725)
Q Consensus 102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 181 (725)
.-...+++++|++++|.+. .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|
T Consensus 76 ~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 76 EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp HHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred hcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 0112345555555555554 45555555666666666666666 55666666666666666666665 556666666666
Q ss_pred CEEEcCCCcCCCCCCCCcC---------CCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCC
Q 041178 182 NELALCHNNLYGPIPPSLG---------NLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN 252 (725)
Q Consensus 182 ~~L~L~~n~l~~~~p~~l~---------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 252 (725)
++|++++|++.+.+|..+. .+++|++|++++|.+. .+|..++.+++|++|++++|.+++ +|..++.+++
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~ 230 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC
Confidence 6666666666666665544 3788888888888776 677778888888888888888874 5667788888
Q ss_pred CCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCccccccccc
Q 041178 253 LGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHI 332 (725)
Q Consensus 253 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 332 (725)
|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred cccc
Q 041178 333 NQLN 336 (725)
Q Consensus 333 n~l~ 336 (725)
+.+.
T Consensus 311 ~~~~ 314 (328)
T 4fcg_A 311 HLQA 314 (328)
T ss_dssp GGSC
T ss_pred HHHH
Confidence 6554
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.7e-33 Score=291.37 Aligned_cols=306 Identities=23% Similarity=0.360 Sum_probs=197.6
Q ss_pred CCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCE
Q 041178 296 GNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFE 375 (725)
Q Consensus 296 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 375 (725)
..+++|++|+++++.+... + .+..+++|++|++++|++++. +. +..+++|++|++++|.+++. ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 3456677777777766553 2 355666666666666666533 22 56666666666666665542 23555555555
Q ss_pred EECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcc
Q 041178 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF 455 (725)
Q Consensus 376 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l 455 (725)
|++++|.+.+..+ +..+++|+.+++++|.....++. +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-------------------------~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-------------------------LSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-------------------------GTTCTTCCEEECCSSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCcccccc-------------------------hhhCCCCcEEEecCCCc
Confidence 5555555553222 44455555555555533332222 44455555555555555
Q ss_pred ccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccc
Q 041178 456 YGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFEL 535 (725)
Q Consensus 456 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 535 (725)
.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 43322 4555566666666665553322 5666777777777777765544 6677778888888887775433 6
Q ss_pred cCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCE
Q 041178 536 GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEK 615 (725)
Q Consensus 536 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 615 (725)
..+++|++|++++|.+++. +.+..+++|++|++++|++++. ..+..+++|++|++++|.+++..|..++.+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 7778888888888887763 4577888888888888887654 35778888888888888888888888888888888
Q ss_pred EeCCCCccccccCccccCCCCCCEEeCcCCCcc
Q 041178 616 LNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 616 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 648 (725)
|++++|++++..| +..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888887666 778888888888888874
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.6e-32 Score=287.74 Aligned_cols=307 Identities=25% Similarity=0.381 Sum_probs=235.6
Q ss_pred ccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCC
Q 041178 271 IGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLR 350 (725)
Q Consensus 271 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 350 (725)
+..+++|++|+++++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 4578899999999999974 44 48889999999999999988644 8999999999999999985 3 3699999999
Q ss_pred EEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcc
Q 041178 351 LLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNN 430 (725)
Q Consensus 351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 430 (725)
+|++++|.+.+..+ +..+++|+.|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 99999999986533 8899999999999997665544 48889999999999998876543 6667777777777776
Q ss_pred ccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchh
Q 041178 431 LSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQ 510 (725)
Q Consensus 431 l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 510 (725)
+.+..+ +..+++|+++++++|.+.+..+ +..+++|++|++++|++++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCcc--
Confidence 664433 4555666666666655543322 4455566666666666654433
Q ss_pred hhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccc
Q 041178 511 LAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS 590 (725)
Q Consensus 511 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 590 (725)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++.+..|..++.+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 66677777777777777643 3567778888888888888774 3578888888889988888888888888888899
Q ss_pred cccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178 591 KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 591 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
+|++++|.+++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999998877666 778889999999998875
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=5.6e-31 Score=275.48 Aligned_cols=226 Identities=25% Similarity=0.302 Sum_probs=119.2
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 56666777766666655666666666666666666666666666666666666666666665 4444433 55666666
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCC--ccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLF--DSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS 264 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 264 (725)
++|.+.+..+..+..+++|++|++++|.+. +..|..+..+ +|++|++++|.+++ +|..+. +
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~------------- 193 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--E------------- 193 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--S-------------
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--C-------------
Confidence 666655444444555555555555555553 2334444444 45555555554442 232221 3
Q ss_pred ccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCc
Q 041178 265 GPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIG 344 (725)
Q Consensus 265 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 344 (725)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+.
T Consensus 194 -----------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 194 -----------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp -----------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred -----------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 4444444444444433344444444444444444444444444444444444444444444 3444444
Q ss_pred CCCCCCEEEccCCcCccCCc
Q 041178 345 NLSNLRLLYLYNNGFYGFVP 364 (725)
Q Consensus 345 ~l~~L~~L~L~~n~l~~~~~ 364 (725)
.+++|+.|++++|++++..+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCT
T ss_pred cCccCCEEECCCCCCCccCh
Confidence 45555555555555544333
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.4e-30 Score=272.39 Aligned_cols=232 Identities=25% Similarity=0.337 Sum_probs=121.0
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 45666666666666555555666666666666666666555666666666666666666555 3343332 44555555
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP 266 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 266 (725)
++|.+.+..+..+.++++|++|++++|.+.. .+..+..+..+++|++|++++|.++.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcChhhccCCCCcCEEECCCCcccc-
Confidence 5555444333334444444444444444421 11333344444444444444444442
Q ss_pred CCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCC
Q 041178 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL 346 (725)
Q Consensus 267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 346 (725)
+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 232222 44555555555555444455555555555555555555544445555555555555555555 445555555
Q ss_pred CCCCEEEccCCcCccCCcccc
Q 041178 347 SNLRLLYLYNNGFYGFVPEEI 367 (725)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~l 367 (725)
++|++|++++|++++..+..+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSS
T ss_pred CCcCEEECCCCcCCccChhhc
Confidence 556666666665554444333
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6.8e-31 Score=274.85 Aligned_cols=267 Identities=22% Similarity=0.242 Sum_probs=176.8
Q ss_pred CCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCc
Q 041178 372 SIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLS 451 (725)
Q Consensus 372 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 451 (725)
+++.|++++|.+++..|..+.++++|++|++++|.+++..|..+.++++|+.|++++|+++.. |..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Ccccc--ccCCEEECC
Confidence 344444444444433333444444444444444444444444444444444444444444422 22211 455566666
Q ss_pred CCccccccCccccCCCCCcEEECCCCccc--ccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecC
Q 041178 452 QNNFYGEISFNWRNFPKLGTFIVSMNNIS--GSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSG 529 (725)
Q Consensus 452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 529 (725)
+|++.+..+..+..+++|+.|++++|.++ +..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 66555544444556666666666666654 2445555555 77777777777765 343332 678888888888887
Q ss_pred CCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccC
Q 041178 530 GMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICN 609 (725)
Q Consensus 530 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 609 (725)
..+..+..+++|++|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 77788888889999999999888877778888899999999999887 77878888899999999999988776666654
Q ss_pred ------CCCCCEEeCCCCccc--cccCccccCCCCCCEEeCcCCC
Q 041178 610 ------MKSLEKLNLCHNNLS--GFIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 610 ------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 646 (725)
..+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367899999999887 6677888999999999998885
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.8e-30 Score=270.01 Aligned_cols=295 Identities=20% Similarity=0.242 Sum_probs=187.1
Q ss_pred CCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEcc
Q 041178 132 KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLN 211 (725)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 211 (725)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3444555544444 3343332 455555555555554444455555556666665555555555556666666666666
Q ss_pred CCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc--cCCccccCCCCCCEEEccCCcccc
Q 041178 212 NNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG--PIPSVIGNLESLLQLDLSENQLSG 289 (725)
Q Consensus 212 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~ 289 (725)
+|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 66654 3443332 677888888888776666667888888888888888753 66777888899999999999887
Q ss_pred ccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccC
Q 041178 290 SIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGY 369 (725)
Q Consensus 290 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 369 (725)
.+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 4555543 78888888888888777777777778888888888777666667777777777777777776 45666666
Q ss_pred CCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccc--cccccccCCCCCCE
Q 041178 370 LKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSG--KVYEAFGYHPNLTF 447 (725)
Q Consensus 370 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~ 447 (725)
+++|++|++++|++++..+..|.... .......++.+++++|.+.. ..+..|..+++++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeE
Confidence 66777777777766654444443210 00112455566666665542 34455666666777
Q ss_pred EeCcCCc
Q 041178 448 LDLSQNN 454 (725)
Q Consensus 448 L~ls~n~ 454 (725)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 7776653
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1e-34 Score=318.83 Aligned_cols=379 Identities=18% Similarity=0.094 Sum_probs=194.4
Q ss_pred CCCCceeeccccccccCCcc-ccCCCCCCEEEccCCcccc----ccCCCCCCCCCccEEEccCCcCcccCcccc-cCCC-
Q 041178 251 SNLGILYLYSNSLSGPIPSV-IGNLESLLQLDLSENQLSG----SIPISLGNLSSLTVMSLFSNSLSSFIPPIL-GNLK- 323 (725)
Q Consensus 251 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~- 323 (725)
++|++|++++|.++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45667777777665433222 4556667777777766653 223444555666666666666554322222 1222
Q ss_pred ---cccccccccccccc----cCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCC
Q 041178 324 ---SLSALGLHINQLNG----VIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTE 396 (725)
Q Consensus 324 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 396 (725)
+|++|++++|+++. .++..+..+++|++|++++|.+.+..+..+.. ......++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhcCCCc
Confidence 35555555555442 23444444445555555544443322211110 00111233
Q ss_pred CcEEEcCCCcCCCC----CCccccCCCCCcEEECcCcccccccccccc-----CCCCCCEEeCcCCccccc----cCccc
Q 041178 397 LVLVNMCENHLSGP----IPKSLRNLTSLERVRFNQNNLSGKVYEAFG-----YHPNLTFLDLSQNNFYGE----ISFNW 463 (725)
Q Consensus 397 L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~n~l~~~----~~~~~ 463 (725)
|+.|++++|.+++. ++..+..+++|+.|++++|.++...+..+. ..++|++|++++|.+++. ++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 44444444444432 123333445555555555554433322221 234555555555555542 23344
Q ss_pred cCCCCCcEEECCCCcccccC-----CccccccCCCcEEEccCCccccc----CchhhhcCCCCCeEeccCceecCCCCcc
Q 041178 464 RNFPKLGTFIVSMNNISGSI-----PLEIGESFKLQVLDISSNHIVGE----IPVQLAKLFSLNKLILSLNQLSGGMPFE 534 (725)
Q Consensus 464 ~~~~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 534 (725)
..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 45555555555555554321 11122355666666666666543 4555555666666666666665433322
Q ss_pred ccC-----ccccccccccccccccc----cccccccCCCCCEEeCCCCcCcccChhhhhc-----ccccccccccccccC
Q 041178 535 LGS-----LTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK-----LIHLSKLDLSYNFLG 600 (725)
Q Consensus 535 ~~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~ 600 (725)
+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 222 24667777777766654 3445556677777777777766554444433 456777777777776
Q ss_pred c----cCcccccCCCCCCEEeCCCCccccccCcc----cc-CCCCCCEEeCcCCCcc
Q 041178 601 K----EMPFQICNMKSLEKLNLCHNNLSGFIPRC----FE-GMHNLSHIDISYNELQ 648 (725)
Q Consensus 601 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~-~l~~L~~L~ls~N~l~ 648 (725)
+ .+|..+..+++|++|++++|++++.-... +. ....|+.|++.++.+.
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 4 56666666777777777777766431111 11 1234666666655543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.5e-34 Score=315.73 Aligned_cols=384 Identities=18% Similarity=0.125 Sum_probs=249.1
Q ss_pred CCCCEEEccCCcCcccCCcc-ccCCCCCCceeeccccccc----cCCccccCCCCCCEEEccCCccccccCCCC-CCCC-
Q 041178 227 KSISTLDLSKNQLSGSIPFS-LGNLSNLGILYLYSNSLSG----PIPSVIGNLESLLQLDLSENQLSGSIPISL-GNLS- 299 (725)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~- 299 (725)
++|++|++++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999987544333 7789999999999999874 346678889999999999999876433222 1233
Q ss_pred ---CccEEEccCCcCcc----cCcccccCCCcccccccccccccccCCccC-----cCCCCCCEEEccCCcCccCC----
Q 041178 300 ---SLTVMSLFSNSLSS----FIPPILGNLKSLSALGLHINQLNGVIPSSI-----GNLSNLRLLYLYNNGFYGFV---- 363 (725)
Q Consensus 300 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~---- 363 (725)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999985 457889999999999999999875443332 23567999999999887643
Q ss_pred cccccCCCCCCEEECcCccccccccccccC-----CCCCcEEEcCCCcCCCC----CCccccCCCCCcEEECcCcccccc
Q 041178 364 PEEIGYLKSIFELELCTNRLRGGIPHSIGN-----LTELVLVNMCENHLSGP----IPKSLRNLTSLERVRFNQNNLSGK 434 (725)
Q Consensus 364 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~ 434 (725)
+..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 445556778888888888876544433322 44677777777766653 344455555666666666555433
Q ss_pred cc-----ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCch
Q 041178 435 VY-----EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPV 509 (725)
Q Consensus 435 ~~-----~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 509 (725)
.. ..+..+++|++|++++|.+++.... .++..+..+++|++|++++|.+.+..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 21 1122344555555555544432100 0334444455666666666655444333
Q ss_pred hhhc-----CCCCCeEeccCceecCC----CCccccCcccccccccccccccccccccccc-----CCCCCEEeCCCCcC
Q 041178 510 QLAK-----LFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSWIPKSIGN-----LLKLRYLNLSNNQF 575 (725)
Q Consensus 510 ~~~~-----~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l 575 (725)
.+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 3332 24666666666666644 3445556677777777777776544443432 56788888888887
Q ss_pred cc----cChhhhhcccccccccccccccCccCcccc----c-CCCCCCEEeCCCCccccccCcc
Q 041178 576 IQ----KIPIEVEKLIHLSKLDLSYNFLGKEMPFQI----C-NMKSLEKLNLCHNNLSGFIPRC 630 (725)
Q Consensus 576 ~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~-~l~~L~~L~Ls~N~l~~~~p~~ 630 (725)
++ .+|..+..+++|++|++++|.+++.-...+ . ...+|+.|++.++......+..
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 75 677777778888888888887765421111 1 2346777777777766444433
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.6e-29 Score=259.68 Aligned_cols=282 Identities=20% Similarity=0.205 Sum_probs=176.3
Q ss_pred CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCC--CC
Q 041178 71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGV--IP 148 (725)
Q Consensus 71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p 148 (725)
|.|++|.|+..+ +. .+|. .-.++|++|++++|.+....+..|.++++|++|++++|.++.. .|
T Consensus 7 C~~~~l~c~~~~-----------l~-~ip~---~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSKG-----------LT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSSC-----------CS-SCCS---CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCCC-----------cc-cCCC---CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 789999996422 11 1111 1124677777777776644444466777777777777766522 24
Q ss_pred ccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCC-CCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178 149 PEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP-PSLGNLSNLANFYLNNNLLFDSIPLVLGNLK 227 (725)
Q Consensus 149 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 227 (725)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 55566677777777777666 355556677777777777776665443 4566677777777777777666666667777
Q ss_pred CCCEEEccCCcCcc-cCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEc
Q 041178 228 SISTLDLSKNQLSG-SIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 306 (725)
+|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 77777777777665 45666677777777777777777666666777777777777777776555556666777777777
Q ss_pred cCCcCcccCcccccCCC-cccccccccccccccCCc--cCcCCCCCCEEEccCCcCccCCccccc
Q 041178 307 FSNSLSSFIPPILGNLK-SLSALGLHINQLNGVIPS--SIGNLSNLRLLYLYNNGFYGFVPEEIG 368 (725)
Q Consensus 307 ~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~ 368 (725)
++|.+++..|..+..++ +|+.|++++|.+.+..+. ...-+...+.+.+..+.+....|..+.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 77777776666666663 677777777776543210 011112233334444555555555444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=265.57 Aligned_cols=286 Identities=19% Similarity=0.149 Sum_probs=205.3
Q ss_pred CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178 68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147 (725)
Q Consensus 68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 147 (725)
..+|.|.|+ |+ +++++++. +|. .+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..
T Consensus 27 ~~~C~~~~~-c~---------~~~~~l~~-iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 27 SLSCDRNGI-CK---------GSSGSLNS-IPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp CCEECTTSE-EE---------CCSTTCSS-CCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCCCCeE-ee---------CCCCCccc-ccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 467899987 64 23344432 331 22 358999999999998877778999999999999999999888
Q ss_pred CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCC-CCcCCCCCCcEEEccCCc-CCccCccccCC
Q 041178 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIP-PSLGNLSNLANFYLNNNL-LFDSIPLVLGN 225 (725)
Q Consensus 148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~ 225 (725)
|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 8889999999999999999996555568999999999999999985443 478889999999999984 66666778888
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCC---CCCCcc
Q 041178 226 LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLG---NLSSLT 302 (725)
Q Consensus 226 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~ 302 (725)
+++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+. ..+.++
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 99999999999999888888888888999999988888644333345578888888888888765444332 234445
Q ss_pred EEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcc
Q 041178 303 VMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNR 382 (725)
Q Consensus 303 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 382 (725)
.+++.++.+++ +.+. .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|+
T Consensus 253 ~l~L~~~~l~~-------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 253 KFTFRNVKITD-------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEEESCBCCH-------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccC-------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 55555444433 1111 234455556666666666666653222223556666666666666
Q ss_pred ccccc
Q 041178 383 LRGGI 387 (725)
Q Consensus 383 l~~~~ 387 (725)
+.+..
T Consensus 313 ~~~~~ 317 (353)
T 2z80_A 313 WDCSC 317 (353)
T ss_dssp BCCCH
T ss_pred ccCcC
Confidence 65543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.2e-32 Score=306.48 Aligned_cols=427 Identities=14% Similarity=0.060 Sum_probs=237.1
Q ss_pred CCCcCCCCCCcEEEccCCcC---CccCccccC------------CCCCCCEEEccCCcCcccCCccccC-CC-CCCceee
Q 041178 196 PPSLGNLSNLANFYLNNNLL---FDSIPLVLG------------NLKSISTLDLSKNQLSGSIPFSLGN-LS-NLGILYL 258 (725)
Q Consensus 196 p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L 258 (725)
+..+..+++|++|+++++.. .+.+|..++ .+++|++|++++|.+++..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 34456778899999987642 133333333 5778888888888777655555554 33 3888888
Q ss_pred cccc-ccc-cCCccccCCCCCCEEEccCCcccccc----CCCCCCCCCccEEEccCCcCcc----cCcccccCCCccccc
Q 041178 259 YSNS-LSG-PIPSVIGNLESLLQLDLSENQLSGSI----PISLGNLSSLTVMSLFSNSLSS----FIPPILGNLKSLSAL 328 (725)
Q Consensus 259 ~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L 328 (725)
++|. ++. .++....++++|++|++++|.+++.. +..+..+++|++|++++|.+++ .++..+..+++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 7765 211 11222336677777777777765431 1122345677777777776652 223334455666666
Q ss_pred ccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178 329 GLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408 (725)
Q Consensus 329 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 408 (725)
++++|.+.+ +|..+..+++|++|+++..... .+ .+..+..+..+++|+.++++++ ..
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~-------------------~~~~~~~l~~~~~L~~L~l~~~-~~ 282 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG-------------------MPEKYMNLVFPRKLCRLGLSYM-GP 282 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT-------------------CTTSSSCCCCCTTCCEEEETTC-CT
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccc--cc-------------------hHHHHHHhhccccccccCcccc-ch
Confidence 666665553 3445555566666666542211 00 0112223334444444444442 12
Q ss_pred CCCCccccCCCCCcEEECcCcccccccc-ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCC-----------
Q 041178 409 GPIPKSLRNLTSLERVRFNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSM----------- 476 (725)
Q Consensus 409 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~----------- 476 (725)
+.+|..+..+++|+.|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+.|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 2344444445555555555555443322 2234555566665552221222222234455566666652
Q ss_pred Cccccc-CCccccccCCCcEEEccCCcccccCchhhhc-CCCCCeEecc----CceecCC-----CCccccCcccccccc
Q 041178 477 NNISGS-IPLEIGESFKLQVLDISSNHIVGEIPVQLAK-LFSLNKLILS----LNQLSGG-----MPFELGSLTELQYLD 545 (725)
Q Consensus 477 n~~~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~ 545 (725)
+.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 333332 1222344677777777777777666666655 7777777775 5566643 233355677778887
Q ss_pred ccccc--cccccccccc-cCCCCCEEeCCCCcCcc-cChhhhhcccccccccccccccCcc-CcccccCCCCCCEEeCCC
Q 041178 546 LSANK--LRSWIPKSIG-NLLKLRYLNLSNNQFIQ-KIPIEVEKLIHLSKLDLSYNFLGKE-MPFQICNMKSLEKLNLCH 620 (725)
Q Consensus 546 Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~ 620 (725)
+++|. +++..+..+. .+++|++|++++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|++|++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 76443 4444333333 36778888888887765 3444556778888888888887544 344445677888888888
Q ss_pred CccccccCccc-cCCCCCCEEeCcCC
Q 041178 621 NNLSGFIPRCF-EGMHNLSHIDISYN 645 (725)
Q Consensus 621 N~l~~~~p~~l-~~l~~L~~L~ls~N 645 (725)
|+++..-...+ ..++.+....+..+
T Consensus 523 n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 523 YRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 88775433333 34555555544443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1e-28 Score=256.99 Aligned_cols=227 Identities=23% Similarity=0.285 Sum_probs=213.2
Q ss_pred CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF 208 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 208 (725)
..+++++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4688999999999999 78989999999999999999999 89999999999999999999999 789999999999999
Q ss_pred EccCCcCCccCccccCC---------CCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCE
Q 041178 209 YLNNNLLFDSIPLVLGN---------LKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQ 279 (725)
Q Consensus 209 ~L~~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 279 (725)
++++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..++.+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 99999998999987765 999999999999999 889999999999999999999995 6777999999999
Q ss_pred EEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcC
Q 041178 280 LDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGF 359 (725)
Q Consensus 280 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 359 (725)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 041178 360 Y 360 (725)
Q Consensus 360 ~ 360 (725)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=264.49 Aligned_cols=257 Identities=16% Similarity=0.150 Sum_probs=158.6
Q ss_pred CCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECC
Q 041178 396 ELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVS 475 (725)
Q Consensus 396 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~ 475 (725)
+|+.|++++|.+++..+..+.++++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444444333344444445555555554444444445555555555555555544333334555555555555
Q ss_pred CCcccccCC-ccccccCCCcEEEccCCc-ccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccccc
Q 041178 476 MNNISGSIP-LEIGESFKLQVLDISSNH-IVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRS 553 (725)
Q Consensus 476 ~n~~~~~~p-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 553 (725)
+|++.+..+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 555553222 245556666666666663 444455566666777777777777766666677777777777777777655
Q ss_pred ccccccccCCCCCEEeCCCCcCcccChhhhh---cccccccccccccccCc----cCcccccCCCCCCEEeCCCCccccc
Q 041178 554 WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVE---KLIHLSKLDLSYNFLGK----EMPFQICNMKSLEKLNLCHNNLSGF 626 (725)
Q Consensus 554 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ 626 (725)
..+..+..+++|++|++++|.+++..+..+. ....++.++++++.+++ .+|..+..+++|++|++++|+++ .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 3333444567777777777777665444332 34556666666666654 47788899999999999999998 4
Q ss_pred cCcc-ccCCCCCCEEeCcCCCccccCCC
Q 041178 627 IPRC-FEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 627 ~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
+|.. |..+++|++|++++|++.+.+|.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 5554 68999999999999999988774
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.8e-31 Score=301.03 Aligned_cols=423 Identities=14% Similarity=0.054 Sum_probs=271.6
Q ss_pred ccccCCCCCCEEEcCCCcC---CCCCCCCcC------------CCCCCcEEEccCCcCCccCccccCC-CCC-CCEEEcc
Q 041178 173 QEIGQLSLINELALCHNNL---YGPIPPSLG------------NLSNLANFYLNNNLLFDSIPLVLGN-LKS-ISTLDLS 235 (725)
Q Consensus 173 ~~~~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~~L~L~~n~l~~~~p~~l~~-l~~-L~~L~Ls 235 (725)
..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+.+..+..++. +++ |++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 3456788899999988642 234454444 6899999999999887776666655 344 9999999
Q ss_pred CCc-Ccc-cCCccccCCCCCCceeecccccccc----CCccccCCCCCCEEEccCCccc----cccCCCCCCCCCccEEE
Q 041178 236 KNQ-LSG-SIPFSLGNLSNLGILYLYSNSLSGP----IPSVIGNLESLLQLDLSENQLS----GSIPISLGNLSSLTVMS 305 (725)
Q Consensus 236 ~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~ 305 (725)
+|. ++. .++.....+++|++|++++|.+++. ++.....+++|++|++++|.++ +.++..+..+++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 986 221 1223345789999999999998765 3334567899999999999986 33444456789999999
Q ss_pred ccCCcCcccCcccccCCCccccccccccccc---ccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcc
Q 041178 306 LFSNSLSSFIPPILGNLKSLSALGLHINQLN---GVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNR 382 (725)
Q Consensus 306 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 382 (725)
+++|.+.+ ++..+..+++|+.|+++..... +..+..+..+++|+.++++++. .+.+|..+..+++|++|++++|.
T Consensus 227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC
T ss_pred ccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc
Confidence 99999887 6678889999999999864332 2333456667777777776642 23344455555566666666655
Q ss_pred cccccc-ccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcC---------
Q 041178 383 LRGGIP-HSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQ--------- 452 (725)
Q Consensus 383 l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~--------- 452 (725)
+++... ..+..+++|+.|+++++ + ..+.++.....+++|++|++++
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~~-~-----------------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRNV-I-----------------------GDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-G-----------------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred CCHHHHHHHHHhCcCCCEEeccCc-c-----------------------CHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 443222 22344455555555422 1 1111222223445555555552
Q ss_pred --CccccccC-ccccCCCCCcEEECCCCcccccCCccccc-cCCCcEEEcc----CCccccc-----CchhhhcCCCCCe
Q 041178 453 --NNFYGEIS-FNWRNFPKLGTFIVSMNNISGSIPLEIGE-SFKLQVLDIS----SNHIVGE-----IPVQLAKLFSLNK 519 (725)
Q Consensus 453 --n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~~~~L~~ 519 (725)
+.+++... .....+++|+.|++..+.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|++
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 33332211 11234566666666666665554444444 6677777775 5556553 4445667888888
Q ss_pred EeccCce--ecCCCCcccc-Cccccccccccccccccc-cccccccCCCCCEEeCCCCcCccc-Chhhhhcccccccccc
Q 041178 520 LILSLNQ--LSGGMPFELG-SLTELQYLDLSANKLRSW-IPKSIGNLLKLRYLNLSNNQFIQK-IPIEVEKLIHLSKLDL 594 (725)
Q Consensus 520 L~L~~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L 594 (725)
|++++|. +++..+..+. .+++|++|++++|.+++. ++..+..+++|++|++++|++++. ++..+..+++|++|+|
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 8886433 4444333333 377888888888888752 445567788899999999987655 4444567888999999
Q ss_pred cccccCccCcccc-cCCCCCCEEeCCCC
Q 041178 595 SYNFLGKEMPFQI-CNMKSLEKLNLCHN 621 (725)
Q Consensus 595 s~N~l~~~~p~~~-~~l~~L~~L~Ls~N 621 (725)
++|+++..-...+ ..++.++...+..+
T Consensus 521 s~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 521 QGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9999876533223 35666666655544
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-27 Score=246.59 Aligned_cols=261 Identities=21% Similarity=0.204 Sum_probs=162.8
Q ss_pred CCCEEEccCCcCccCCcccccCCCCCCEEECcCccccc--cccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEE
Q 041178 348 NLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRG--GIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR 425 (725)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 425 (725)
+|++|++++|.++...+..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+.. +|..+..+++|+.|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 44444444444443333334444445555555444442 123344445555555555555542 344455566666666
Q ss_pred CcCcccccccc-ccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccc-cCCccccccCCCcEEEccCCcc
Q 041178 426 FNQNNLSGKVY-EAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISG-SIPLEIGESFKLQVLDISSNHI 503 (725)
Q Consensus 426 l~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~Ls~n~l 503 (725)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 66666655444 456666677777777777666666666667777777777777665 4566677777777777777777
Q ss_pred cccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccC-CCCCEEeCCCCcCcccCh--
Q 041178 504 VGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNL-LKLRYLNLSNNQFIQKIP-- 580 (725)
Q Consensus 504 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p-- 580 (725)
++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|..+..+ ++|++|++++|++.+.-+
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 77777777777777777777777776666667777788888888888877777777777 478888888888765422
Q ss_pred hhhhcccccccccccccccCccCcccccC
Q 041178 581 IEVEKLIHLSKLDLSYNFLGKEMPFQICN 609 (725)
Q Consensus 581 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 609 (725)
.....+...+.+.+..+.+....|..+.+
T Consensus 268 ~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 268 SFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp HHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHHHHHHhhhhhhccccccccCCchhhCC
Confidence 22233445555666666666666665554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-27 Score=244.59 Aligned_cols=255 Identities=20% Similarity=0.166 Sum_probs=196.6
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccC
Q 041178 85 ISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDV 164 (725)
Q Consensus 85 ~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 164 (725)
+.+++++.++... | ..-.++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~i-p---~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-P---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSC-C---TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccC-C---cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 4556666665432 2 12357899999999999887778899999999999999999988888899999999999999
Q ss_pred Cc-CCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccC
Q 041178 165 NQ-LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSI 243 (725)
Q Consensus 165 n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 243 (725)
|. ++...|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666888889999999999999998877888888899999999999887776677888888899998888888666
Q ss_pred CccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCC
Q 041178 244 PFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLK 323 (725)
Q Consensus 244 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 323 (725)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 666888888888888888888777888888888888888888887655556777888888888888776543211 1112
Q ss_pred cccccccccccccccCCccCc
Q 041178 324 SLSALGLHINQLNGVIPSSIG 344 (725)
Q Consensus 324 ~L~~L~l~~n~l~~~~~~~l~ 344 (725)
.++.+....+.+....|..+.
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGT
T ss_pred HHHhcccccCccccCCchHhC
Confidence 344445555555555555443
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.2e-27 Score=257.85 Aligned_cols=227 Identities=24% Similarity=0.208 Sum_probs=151.3
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57778888888777777777777888888888888777777777777777888888777777666666777777777777
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCc-cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP-LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (725)
++|.+.+..+..+.++++|++|++++|...+.++ ..|..+++|++|++++|++++. | .+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 7777776555567777777777777744333333 4566777777777777776632 2 35566666666666666666
Q ss_pred cCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccc
Q 041178 266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335 (725)
Q Consensus 266 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 335 (725)
..|..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5566666666666666666666655555566666666666666665554444445555555555555444
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.7e-27 Score=257.34 Aligned_cols=231 Identities=22% Similarity=0.187 Sum_probs=159.8
Q ss_pred CCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEc
Q 041178 419 TSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDI 498 (725)
Q Consensus 419 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L 498 (725)
++++.|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555555555555555555555566666666666655555555556666666666666665554555666666666666
Q ss_pred cCCcccccCchhhhcCCCCCeEeccCc-eecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcc
Q 041178 499 SSNHIVGEIPVQLAKLFSLNKLILSLN-QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQ 577 (725)
Q Consensus 499 s~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 577 (725)
++|++.+..+..|..+++|++|++++| .+....+..|..+++|++|++++|.+++. | .+..+++|++|+|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 666666555556666666777777663 33333334567777777777777777763 3 46777888888888888888
Q ss_pred cChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccC
Q 041178 578 KIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 578 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 651 (725)
..|..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+..
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 88888888888888888888888877888888888888888888888777777888888888888888876544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=255.62 Aligned_cols=230 Identities=25% Similarity=0.249 Sum_probs=145.7
Q ss_pred CCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEcc
Q 041178 420 SLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDIS 499 (725)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls 499 (725)
+++.|++++|++++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44445555555544444445555555555555555554444445555555555555555554444445555556666666
Q ss_pred CCcccccCchhhhcCCCCCeEeccCce-ecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCccc
Q 041178 500 SNHIVGEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQK 578 (725)
Q Consensus 500 ~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 578 (725)
+|++.+..+..|..+++|++|++++|+ +....+..|..+++|++|++++|.++. +| .+..+++|++|+|++|++++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 666555555555666666666666533 332333456666777777777776665 33 366777777777777777777
Q ss_pred ChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccC
Q 041178 579 IPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 579 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 651 (725)
.|..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+..
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 7777777777777777777777777777777888888888888887777777777788888888888776543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7e-27 Score=238.77 Aligned_cols=235 Identities=20% Similarity=0.182 Sum_probs=113.4
Q ss_pred CCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcc-ccccccccccCCCCCCEEeCc
Q 041178 373 IFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNN-LSGKVYEAFGYHPNLTFLDLS 451 (725)
Q Consensus 373 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ls 451 (725)
+++|++++|.+++..+..+..+++|+.|++++|.+++..|..+.++++|+.|++++|. ++...+..+..+++|++|+++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 3333333333333333333333334444444333333333333344444444444443 333333444444444444444
Q ss_pred CCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCC
Q 041178 452 QNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGM 531 (725)
Q Consensus 452 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 531 (725)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 44444444444444444444444444444433344455555555555555555444444555555666666666665555
Q ss_pred CccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCccccc
Q 041178 532 PFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQIC 608 (725)
Q Consensus 532 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 608 (725)
|..+..+++|++|++++|.+++..+..+..+++|++|++++|++....+.. .-...++.+..+.+.+....|..+.
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 555666666666666666666554455666666666666666665432221 1123344455555555555555443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=251.68 Aligned_cols=227 Identities=24% Similarity=0.215 Sum_probs=153.2
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67888888888888877788888888888888888888777778888888888888888888666667788888888888
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccC-ccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSI-PLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (725)
++|.+....+..+..+++|++|++++|...+.+ +..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 888887666667777788888888775433333 345677777777777777766 333 35555566666666665555
Q ss_pred cCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccc
Q 041178 266 PIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQL 335 (725)
Q Consensus 266 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 335 (725)
..|..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 5555555555555555555555555555555555555555555555554444444444444444444443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.7e-29 Score=258.16 Aligned_cols=249 Identities=18% Similarity=0.146 Sum_probs=202.8
Q ss_pred ccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCcccc-cccccccc-------CCCCCCEEeCcCCccccccCcc
Q 041178 391 IGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLS-GKVYEAFG-------YHPNLTFLDLSQNNFYGEISFN 462 (725)
Q Consensus 391 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~-------~~~~L~~L~ls~n~l~~~~~~~ 462 (725)
++..++|+.+++++|.+ .+|..+... |+.|++++|.++ ..++..+. .+++|++|++++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34556788888888888 567655544 788888888884 44555444 6889999999999998888877
Q ss_pred c--cCCCCCcEEECCCCcccccCCcccccc-----CCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCC--CCc
Q 041178 463 W--RNFPKLGTFIVSMNNISGSIPLEIGES-----FKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGG--MPF 533 (725)
Q Consensus 463 ~--~~~~~L~~L~l~~n~~~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~ 533 (725)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 8889999999999999877 7777776 8999999999999988888999999999999999987764 233
Q ss_pred cc--cCcccccccccccccccc---ccccccccCCCCCEEeCCCCcCcccCh-hhhhcccccccccccccccCccCcccc
Q 041178 534 EL--GSLTELQYLDLSANKLRS---WIPKSIGNLLKLRYLNLSNNQFIQKIP-IEVEKLIHLSKLDLSYNFLGKEMPFQI 607 (725)
Q Consensus 534 ~~--~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 607 (725)
.+ ..+++|++|++++|++++ .....+..+++|++|++++|++.+.+| ..+..+++|++|+|++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 788999999999999984 222345678999999999999988775 45667899999999999996 778777
Q ss_pred cCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccc
Q 041178 608 CNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 608 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 649 (725)
. ++|++||+++|++++. |. +..+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6 8999999999999876 65 8899999999999999875
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.3e-29 Score=257.75 Aligned_cols=247 Identities=23% Similarity=0.216 Sum_probs=142.9
Q ss_pred CCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCC-CCCCCccCc-------CCCCCCEEEccCCcCCCCCCccc-
Q 041178 105 SFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQL-TGVIPPEIG-------HLNQLRSLYFDVNQLHGPIPQEI- 175 (725)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~- 175 (725)
..++|++|++++|.+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344566666666666 455544433 66666666666 334454444 56666666666666666666554
Q ss_pred -cCCCCCCEEEcCCCcCCCCCCCCcCCC-----CCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCccc--CCccc
Q 041178 176 -GQLSLINELALCHNNLYGPIPPSLGNL-----SNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGS--IPFSL 247 (725)
Q Consensus 176 -~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~l 247 (725)
+.+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..|..++.+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5666666666666666655 5555544 6666666666666665556666666666666666665543 22222
Q ss_pred --cCCCCCCceeeccccccc--cCC-ccccCCCCCCEEEccCCccccccC-CCCCCCCCccEEEccCCcCcccCcccccC
Q 041178 248 --GNLSNLGILYLYSNSLSG--PIP-SVIGNLESLLQLDLSENQLSGSIP-ISLGNLSSLTVMSLFSNSLSSFIPPILGN 321 (725)
Q Consensus 248 --~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 321 (725)
..+++|++|++++|.+++ .++ ..+.++++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 556666666666666652 111 223455666666666666665543 33445566666666666666 3444443
Q ss_pred CCcccccccccccccccCCccCcCCCCCCEEEccCCcCcc
Q 041178 322 LKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYG 361 (725)
Q Consensus 322 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 361 (725)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5666666666666544 43 5556666666666665543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-28 Score=253.35 Aligned_cols=265 Identities=20% Similarity=0.160 Sum_probs=198.5
Q ss_pred EEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCc
Q 041178 375 ELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNN 454 (725)
Q Consensus 375 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 454 (725)
..+++.+.+.......+..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..+ +..+++|++|++++|+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34455555544444444556677777777777777666677777777777777777776554 6777788888888887
Q ss_pred cccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCcc
Q 041178 455 FYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFE 534 (725)
Q Consensus 455 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 534 (725)
+++.. ..++|+.|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 76533 2377888888888877654433 567888888888888777778888888888888888888766666
Q ss_pred c-cCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCC
Q 041178 535 L-GSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSL 613 (725)
Q Consensus 535 ~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 613 (725)
+ ..+++|++|++++|.+++. + ....+++|++|++++|++++..+ .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 5 4678888889988888875 3 33458889999999999876544 4888899999999999986 467788888999
Q ss_pred CEEeCCCCccc-cccCccccCCCCCCEEeCcC-CCccccCCC
Q 041178 614 EKLNLCHNNLS-GFIPRCFEGMHNLSHIDISY-NELQGPIPN 653 (725)
Q Consensus 614 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~g~ip~ 653 (725)
+.|++++|++. +.+|..+..++.|+.+++++ +.+.|..|.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999988 77888888888888888884 456665554
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-25 Score=227.83 Aligned_cols=218 Identities=25% Similarity=0.249 Sum_probs=129.1
Q ss_pred CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178 68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147 (725)
Q Consensus 68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 147 (725)
.++|.|.|+.|...+.++.+++++..+.. +|. .+ .+++++|++++|.+.+..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 58899999999765667778888877764 331 12 145677777777666555556666666666666666666444
Q ss_pred CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLK 227 (725)
Q Consensus 148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 227 (725)
+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 44456666666666666666654444555566666666666655555444455555555555555555444334444455
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEcc
Q 041178 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLF 307 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 307 (725)
+|++|++++|. +++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 158 ~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 158 SLKELRLYNNQ------------------------LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp TCCEEECCSSC------------------------CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ccceeEecCCc------------------------CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 55555555544 444444445555556666666665554444445556666666666
Q ss_pred CCcCcc
Q 041178 308 SNSLSS 313 (725)
Q Consensus 308 ~n~l~~ 313 (725)
+|.+..
T Consensus 214 ~N~~~c 219 (270)
T 2o6q_A 214 ENPWDC 219 (270)
T ss_dssp SSCBCC
T ss_pred CCCeeC
Confidence 665543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=246.74 Aligned_cols=262 Identities=18% Similarity=0.129 Sum_probs=149.3
Q ss_pred ccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCC
Q 041178 329 GLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLS 408 (725)
Q Consensus 329 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 408 (725)
+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 344444433333333344455555555555555555555555555555555555554333 555555556665555554
Q ss_pred CCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccc-
Q 041178 409 GPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI- 487 (725)
Q Consensus 409 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~- 487 (725)
+.. ..++|+.|++++|++++..+.. +++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+
T Consensus 94 ~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 321 2255666666666655544332 3556666666666666555556666666666666666665544444
Q ss_pred cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCE
Q 041178 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY 567 (725)
Q Consensus 488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 567 (725)
..+++|++|++++|.+++..+ ...+++|++|++++|++++. |..+..+++|++|++++|++++ +|..+..+++|+.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~ 241 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred hccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCE
Confidence 245666666666666654421 22356666666666666643 3346666677777777776665 4556666677777
Q ss_pred EeCCCCcCc-ccChhhhhccccccccccccc-ccCccCc
Q 041178 568 LNLSNNQFI-QKIPIEVEKLIHLSKLDLSYN-FLGKEMP 604 (725)
Q Consensus 568 L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p 604 (725)
|++++|++. +.+|..+..++.|+.|++++| .+.+..|
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 777777766 556666666667777766633 3444433
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-25 Score=251.53 Aligned_cols=278 Identities=26% Similarity=0.281 Sum_probs=153.2
Q ss_pred CCCCccCcceeC-------CCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCC
Q 041178 68 INPCAWVGISCN-------QAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGN 140 (725)
Q Consensus 68 ~~~C~w~gv~C~-------~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~ 140 (725)
.+||.|+|..|. ....++.++++++++. .+|. .+. ++|++|++++|.+. .+|. .+++|++|+|++
T Consensus 19 ~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~ 90 (622)
T 3g06_A 19 APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSG 90 (622)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCC
Confidence 578999764321 1234677777777776 4442 222 67777777777765 3443 456777777777
Q ss_pred CCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCc
Q 041178 141 NQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIP 220 (725)
Q Consensus 141 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 220 (725)
|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+.+ +|
T Consensus 91 N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~ 157 (622)
T 3g06_A 91 NQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP 157 (622)
T ss_dssp CCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred CcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC
Confidence 7776 3444 56777777777777664 333 45667777777776664 3432 3666677777666643 33
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCC
Q 041178 221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSS 300 (725)
Q Consensus 221 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 300 (725)
. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.. +++
T Consensus 158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~ 222 (622)
T 3g06_A 158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSG 222 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTT
T ss_pred C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCC
Confidence 2 23556666666666663 33 334556666666666553 3321 245566666666555 23322 245
Q ss_pred ccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178 301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380 (725)
Q Consensus 301 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 380 (725)
|++|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 5555555555554 22 22344555555555554 2332 3344555555555444 3344444444444444444
Q ss_pred cccccccccc
Q 041178 381 NRLRGGIPHS 390 (725)
Q Consensus 381 n~l~~~~~~~ 390 (725)
|++++..|..
T Consensus 294 N~l~~~~~~~ 303 (622)
T 3g06_A 294 NPLSERTLQA 303 (622)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCCcCHHH
Confidence 4444444433
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.4e-27 Score=256.26 Aligned_cols=236 Identities=21% Similarity=0.159 Sum_probs=137.0
Q ss_pred CCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEE
Q 041178 394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFI 473 (725)
Q Consensus 394 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 473 (725)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3456666666666666555666666666666666666665544 5566666666666666654322 25566666
Q ss_pred CCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCcccc-Cccccccccccccccc
Q 041178 474 VSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELG-SLTELQYLDLSANKLR 552 (725)
Q Consensus 474 l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~ 552 (725)
+++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 666665544332 234566666666666655555556666666666666666655555543 4566666666666665
Q ss_pred cccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc-cccCccc
Q 041178 553 SWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS-GFIPRCF 631 (725)
Q Consensus 553 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l 631 (725)
+. | ....+++|+.|+|++|.+++..|. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 53 2 223456666666666666554333 5566666666666666643 4545566666666666666655 4455555
Q ss_pred cCCCCCCEEeCc
Q 041178 632 EGMHNLSHIDIS 643 (725)
Q Consensus 632 ~~l~~L~~L~ls 643 (725)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 555555555543
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4e-29 Score=283.47 Aligned_cols=409 Identities=13% Similarity=0.099 Sum_probs=211.8
Q ss_pred CCCCCCEEEccCCcCcccCCcccc-CCCCCCceeeccc-ccccc-CCccccCCCCCCEEEccCCccccccCCC----CCC
Q 041178 225 NLKSISTLDLSKNQLSGSIPFSLG-NLSNLGILYLYSN-SLSGP-IPSVIGNLESLLQLDLSENQLSGSIPIS----LGN 297 (725)
Q Consensus 225 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~ 297 (725)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.+ ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 445566666666555544444443 4556666666655 33221 2222335566666666666554332222 224
Q ss_pred CCCccEEEccCCc--Cccc-CcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCC
Q 041178 298 LSSLTVMSLFSNS--LSSF-IPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIF 374 (725)
Q Consensus 298 l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 374 (725)
+++|++|++++|. ++.. ++.....+++|+.|++++|...+.++..+..+++|+.|++..+...
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-------------- 248 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-------------- 248 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC--------------
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc--------------
Confidence 5566666666664 1110 1111233456666666655222224445555566666664433210
Q ss_pred EEECcCccccccccccccCCCCCcEE-EcCCCcCCCCCCccccCCCCCcEEECcCccccccccc-cccCCCCCCEEeCcC
Q 041178 375 ELELCTNRLRGGIPHSIGNLTELVLV-NMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYE-AFGYHPNLTFLDLSQ 452 (725)
Q Consensus 375 ~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~ls~ 452 (725)
+..+.+.+ ++..+.++++|+.+ .+.... .+.++..+..+++|+.|++++|.+++.... .+..+++|++|++++
T Consensus 249 ---~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 249 ---VRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp ---CCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred ---cchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 11111221 12233334444443 111111 111222223344444444444443332211 133445555555554
Q ss_pred Cccccc-cCccccCCCCCcEEECC---------CCcccccCCccc-cccCCCcEEEccCCcccccCchhhh-cCCCCCeE
Q 041178 453 NNFYGE-ISFNWRNFPKLGTFIVS---------MNNISGSIPLEI-GESFKLQVLDISSNHIVGEIPVQLA-KLFSLNKL 520 (725)
Q Consensus 453 n~l~~~-~~~~~~~~~~L~~L~l~---------~n~~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L 520 (725)
| +... ++.....+++|+.|++. .+.+++.....+ ..+++|++|+++.|.+++.....+. .+++|+.|
T Consensus 324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 4 2211 11112234555555552 233332222222 2367777777777777665555554 47788888
Q ss_pred ecc--C----ceecCC-----CCccccCcccccccccccccccccccccccc-CCCCCEEeCCCCcCcccChhhh-hccc
Q 041178 521 ILS--L----NQLSGG-----MPFELGSLTELQYLDLSANKLRSWIPKSIGN-LLKLRYLNLSNNQFIQKIPIEV-EKLI 587 (725)
Q Consensus 521 ~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~ 587 (725)
+++ + +.+++. ++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 887 3 444421 112255678888888877 565544455554 7889999999888876655555 6788
Q ss_pred ccccccccccccCccCcc-cccCCCCCCEEeCCCCccccccCccc-cCCCCCCEEeCcCCCccccCCCC
Q 041178 588 HLSKLDLSYNFLGKEMPF-QICNMKSLEKLNLCHNNLSGFIPRCF-EGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 588 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
+|++|+|++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+......|..
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~ 550 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTT
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccccc
Confidence 899999999988655443 34558899999999998864433444 45677776666666544434433
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1e-28 Score=280.15 Aligned_cols=377 Identities=13% Similarity=0.078 Sum_probs=248.3
Q ss_pred cCCCCCCceeeccccccccCCcccc-CCCCCCEEEccCC-ccccc-cCCCCCCCCCccEEEccCCcCcccCcccccCCCc
Q 041178 248 GNLSNLGILYLYSNSLSGPIPSVIG-NLESLLQLDLSEN-QLSGS-IPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS 324 (725)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 324 (725)
..+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++..+.++.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~---- 177 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS---- 177 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG----
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH----
Confidence 3455666666666665554444443 4556666666655 33221 122222445555555555554433222221
Q ss_pred ccccccccccccccCCccCcCCCCCCEEEccCCc--CccC-CcccccCCCCCCEEECcCccccccccccccCCCCCcEEE
Q 041178 325 LSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNG--FYGF-VPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVN 401 (725)
Q Consensus 325 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 401 (725)
.....+++|++|++++|. +... ++.....+++|+.|++++|...+.++..+..+++|+.++
T Consensus 178 ----------------~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 178 ----------------HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp ----------------GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred ----------------HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 122355677777777765 2111 111223467888888887733334677777788888888
Q ss_pred cCCCc-------CCCCCCccccCCCCCcEE-ECcCccccccccccccCCCCCCEEeCcCCccccccCc-cccCCCCCcEE
Q 041178 402 MCENH-------LSGPIPKSLRNLTSLERV-RFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISF-NWRNFPKLGTF 472 (725)
Q Consensus 402 l~~n~-------l~~~~p~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L 472 (725)
+..+. +.+ ++..+.++++|+.+ .+.+.. .+.++..+..+++|++|++++|.+++.... .+..+++|+.|
T Consensus 242 l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 242 TGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319 (594)
T ss_dssp CSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cccccCccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence 65543 232 34467889999999 444322 233445555789999999999997754332 35689999999
Q ss_pred ECCCCcccc-cCCccccccCCCcEEEccC---------CcccccCchhhh-cCCCCCeEeccCceecCCCCcccc-Cccc
Q 041178 473 IVSMNNISG-SIPLEIGESFKLQVLDISS---------NHIVGEIPVQLA-KLFSLNKLILSLNQLSGGMPFELG-SLTE 540 (725)
Q Consensus 473 ~l~~n~~~~-~~p~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~-~l~~ 540 (725)
++++| +.. .++.....+++|++|++++ +.+++.....+. .+++|+.|++..|.+++..+..+. .+++
T Consensus 320 ~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~ 398 (594)
T 2p1m_B 320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398 (594)
T ss_dssp EEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT
T ss_pred eCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC
Confidence 99988 432 2333344589999999943 455544334443 589999999999998866555554 5899
Q ss_pred ccccccc--c----ccccc-----ccccccccCCCCCEEeCCCCcCcccChhhhhc-ccccccccccccccCccCcccc-
Q 041178 541 LQYLDLS--A----NKLRS-----WIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK-LIHLSKLDLSYNFLGKEMPFQI- 607 (725)
Q Consensus 541 L~~L~Ls--~----n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~- 607 (725)
|+.|+++ + +.++. .++..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 477 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL 477 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH
T ss_pred cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH
Confidence 9999999 4 45552 1233467889999999988 777766666665 8999999999999977665555
Q ss_pred cCCCCCCEEeCCCCccccccCc-cccCCCCCCEEeCcCCCcc
Q 041178 608 CNMKSLEKLNLCHNNLSGFIPR-CFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 608 ~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 648 (725)
..+++|++|+|++|.+++..+. ....+++|++|++++|+++
T Consensus 478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6789999999999999755444 3456899999999999984
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5e-25 Score=223.83 Aligned_cols=214 Identities=25% Similarity=0.257 Sum_probs=171.4
Q ss_pred CCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL 522 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 522 (725)
++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666655556666667777777777666666666777777888888888877777777888888888888
Q ss_pred cCceecCCCCccccCccccccccccccccccc-cccccccCCCCCEEeCCCCcCcccChhhhhcccccc----ccccccc
Q 041178 523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSW-IPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLS----KLDLSYN 597 (725)
Q Consensus 523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N 597 (725)
++|.+++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888877776788888999999999988774 588899999999999999999888888888888887 7899999
Q ss_pred ccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCc
Q 041178 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTF 657 (725)
Q Consensus 598 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 657 (725)
.+++..+..+. ..+|++|++++|++++..+..|..+++|++|++++|++.+.+|....+
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 99776665554 458999999999999877777899999999999999999988765444
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-23 Score=235.63 Aligned_cols=176 Identities=29% Similarity=0.397 Sum_probs=111.4
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 45788888888876 5666554 78888888888887 4554 5678888888888877 3554 5677888888
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP 266 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 266 (725)
++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 8877774 333 45677777777777654 4432 3667777777776663 332 23456666666666653
Q ss_pred CCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178 267 IPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313 (725)
Q Consensus 267 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (725)
+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++.
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS 215 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc
Confidence 33 234556666666666553 3322 2455555555555543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=245.88 Aligned_cols=236 Identities=19% Similarity=0.163 Sum_probs=137.4
Q ss_pred CCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEE
Q 041178 346 LSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVR 425 (725)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 425 (725)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..| +..+++|+.|++++|.+++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3456666666666665555556666666666666666655444 5555666666666665553221 25556666
Q ss_pred CcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccc-ccCCCcEEEccCCccc
Q 041178 426 FNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIG-ESFKLQVLDISSNHIV 504 (725)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~Ls~n~l~ 504 (725)
+++|.+++..+.. +++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.++
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 6666655544432 35566666666666665555556666666666666666655555554 4566666666666665
Q ss_pred ccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCc-ccChhhh
Q 041178 505 GEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFI-QKIPIEV 583 (725)
Q Consensus 505 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~ 583 (725)
+..+ ...+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 4422 2235666666666666664333 35566666666666666665 4555666666666666666665 4555566
Q ss_pred hccccccccccc
Q 041178 584 EKLIHLSKLDLS 595 (725)
Q Consensus 584 ~~l~~L~~L~Ls 595 (725)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 666666666654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.6e-24 Score=216.71 Aligned_cols=206 Identities=24% Similarity=0.242 Sum_probs=163.9
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998877778899999999999999998777778899999999999999998877788889999999999
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCcc-CccccCCCCCCCEEEccCCcCcccCCccccCCCCCC----ceeeccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDS-IPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLG----ILYLYSN 261 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n 261 (725)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99998877776788888999999999888763 578888888888888888888877666777666666 6777777
Q ss_pred cccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178 262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313 (725)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (725)
.+++..+..+. ..+|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 77755444333 3367777777777775555556667777777777776664
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-23 Score=213.00 Aligned_cols=206 Identities=22% Similarity=0.209 Sum_probs=155.1
Q ss_pred CCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccC
Q 041178 445 LTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSL 524 (725)
Q Consensus 445 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~ 524 (725)
.+.++++++.++. +|..+ .++++.|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555555542 33322 14556666666666555555666667777777777777655555667777788888888
Q ss_pred ceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc
Q 041178 525 NQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP 604 (725)
Q Consensus 525 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 604 (725)
|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 88776666677788888888888888888777778888888888888888887776678888899999999999887777
Q ss_pred ccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178 605 FQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 605 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 7788899999999999999877777788899999999999998876653
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.1e-23 Score=211.14 Aligned_cols=209 Identities=26% Similarity=0.298 Sum_probs=120.7
Q ss_pred cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207 (725)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 207 (725)
..+++|++|++++|.+.. + ..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344455555555555442 1 2344555555555555555431 24555555555555555555444444555555555
Q ss_pred EEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcc
Q 041178 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQL 287 (725)
Q Consensus 208 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 287 (725)
|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555554445555556666666666666554444455666666666666666655555556666677777777766
Q ss_pred ccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCC
Q 041178 288 SGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLS 347 (725)
Q Consensus 288 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 347 (725)
++..|..+..+++|++|++++|.+.+ .+++++.+++..|.++|.+|.+++.++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 66555556666777777777776553 245667777777777777776666543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.4e-23 Score=210.72 Aligned_cols=211 Identities=24% Similarity=0.269 Sum_probs=171.9
Q ss_pred cCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCC
Q 041178 103 FSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLIN 182 (725)
Q Consensus 103 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 182 (725)
...+++|++|++++|.+.. + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..++++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4567788888888887753 2 3577888888888888888753 4778888888888888888877777788888888
Q ss_pred EEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccc
Q 041178 183 ELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNS 262 (725)
Q Consensus 183 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 262 (725)
+|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|++++..+..++.+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888888887777778888888888888888887777777888889999999888887767677888889999999998
Q ss_pred ccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCc
Q 041178 263 LSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKS 324 (725)
Q Consensus 263 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 324 (725)
+++..+..+..+++|++|++++|.+.+ .+++|+.+++..|.++|.+|.+++.+..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888777778888999999999988764 3567888888999999988888776554
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.8e-23 Score=209.47 Aligned_cols=181 Identities=25% Similarity=0.190 Sum_probs=129.4
Q ss_pred CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccc
Q 041178 467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDL 546 (725)
Q Consensus 467 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 546 (725)
+.++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 3444555555555444444555555555555555555543322 45667777777777776 56666777788888888
Q ss_pred cccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccc
Q 041178 547 SANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGF 626 (725)
Q Consensus 547 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 626 (725)
++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 888888766677888888888888888887777777778888888888888887666666778888888888888887 6
Q ss_pred cCccccCCCCCCEEeCcCCCccccC
Q 041178 627 IPRCFEGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 627 ~p~~l~~l~~L~~L~ls~N~l~g~i 651 (725)
+|..+..+.+|+++++++|++.+..
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cChhhcccccCCeEEeCCCCccCcC
Confidence 6777777788888888888886543
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.3e-23 Score=204.12 Aligned_cols=191 Identities=23% Similarity=0.246 Sum_probs=120.9
Q ss_pred CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178 68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147 (725)
Q Consensus 68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 147 (725)
.+||.|.|++|.. ..+.+++++.++.. +| ..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..
T Consensus 2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp --CHHHHSSEEEG--GGTEEECTTCCCSS-CC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred ccCCCCCceEcCC--CCeEEecCCCCccc-cC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 3688999999953 23467788777663 23 1222 56777777777777766667777777777777777777666
Q ss_pred CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLK 227 (725)
Q Consensus 148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 227 (725)
|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 66677777777777777777765556666667777777777766655555556666666666666666554444555566
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCceeecccccc
Q 041178 228 SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS 264 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 264 (725)
+|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6666666666555444444444455555555544443
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.9e-22 Score=205.58 Aligned_cols=205 Identities=24% Similarity=0.226 Sum_probs=150.4
Q ss_pred ccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCC
Q 041178 102 AFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLI 181 (725)
Q Consensus 102 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 181 (725)
.+..++++++++++++.++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|.+++..+ .+.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 4566777777777777765 3444443 577788888887777667777777888888888877774322 2677778
Q ss_pred CEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccc
Q 041178 182 NELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSN 261 (725)
Q Consensus 182 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 261 (725)
++|++++|.+. .+|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888887776 56667777778888888888777666677777888888888888877666666777778888888888
Q ss_pred cccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178 262 SLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313 (725)
Q Consensus 262 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (725)
++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 877655556677888888888888887 567777777788888888877653
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.7e-25 Score=234.35 Aligned_cols=267 Identities=17% Similarity=0.218 Sum_probs=183.5
Q ss_pred CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCC--CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCC
Q 041178 68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSF--PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTG 145 (725)
Q Consensus 68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 145 (725)
..|..|.++.|+ ...++.++++++.+.. ..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++
T Consensus 34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASD-ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTC-STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcC-chhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 456689999986 3457888888876652 344555 7888888888888776665 5578888888888888775
Q ss_pred C-CCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC-cCCCC-CCCCcCCCCCCcEEEccCC-cCCcc-Cc
Q 041178 146 V-IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN-NLYGP-IPPSLGNLSNLANFYLNNN-LLFDS-IP 220 (725)
Q Consensus 146 ~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p 220 (725)
. +|..+..+++|++|++++|.+++..|..++++++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 5 6777788888888888888887777777888888888888888 56542 4555667788888888888 67653 45
Q ss_pred cccCCCC-CCCEEEccCC--cCc-ccCCccccCCCCCCceeecccc-ccccCCccccCCCCCCEEEccCCc-cccccCCC
Q 041178 221 LVLGNLK-SISTLDLSKN--QLS-GSIPFSLGNLSNLGILYLYSNS-LSGPIPSVIGNLESLLQLDLSENQ-LSGSIPIS 294 (725)
Q Consensus 221 ~~l~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~ 294 (725)
..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 6667777 8888888877 444 3455566677777777777777 565666667777777777777774 22221124
Q ss_pred CCCCCCccEEEccCCcCcccCcccccCC-CcccccccccccccccCCccCc
Q 041178 295 LGNLSSLTVMSLFSNSLSSFIPPILGNL-KSLSALGLHINQLNGVIPSSIG 344 (725)
Q Consensus 295 l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~ 344 (725)
+..+++|++|++++| ++. ..+..+ .++..|+++.|++++..|..++
T Consensus 268 l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 556777777777776 322 122222 2355555666666666555544
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.5e-24 Score=229.31 Aligned_cols=223 Identities=21% Similarity=0.160 Sum_probs=115.7
Q ss_pred EECcCccccccccccccCCCCCcEEEcCCCcCCCCCC----ccccCCC-CCcEEECcCccccccccccccCC-----CCC
Q 041178 376 LELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIP----KSLRNLT-SLERVRFNQNNLSGKVYEAFGYH-----PNL 445 (725)
Q Consensus 376 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L 445 (725)
++++.|.++|.+|..+...++|+.|++++|.+++..+ ..+..++ +|+.|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4666777777776666666667777777777766555 5555666 67777777776666555544443 666
Q ss_pred CEEeCcCCccccccCcc----ccCC-CCCcEEECCCCcccccCCccccc-----cCCCcEEEccCCcccccCch----hh
Q 041178 446 TFLDLSQNNFYGEISFN----WRNF-PKLGTFIVSMNNISGSIPLEIGE-----SFKLQVLDISSNHIVGEIPV----QL 511 (725)
Q Consensus 446 ~~L~ls~n~l~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~~~~----~~ 511 (725)
++|++++|++++..+.. +..+ ++|++|++++|.+++..+..+.. ..+|++|++++|.+.+.... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666665544432 2222 55666666666555443333221 23555555555555533222 22
Q ss_pred hcCC-CCCeEeccCceecCCCCcccc----Cc-cccccccccccccccc----ccccccc-CCCCCEEeCCCCcCcccCh
Q 041178 512 AKLF-SLNKLILSLNQLSGGMPFELG----SL-TELQYLDLSANKLRSW----IPKSIGN-LLKLRYLNLSNNQFIQKIP 580 (725)
Q Consensus 512 ~~~~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~p 580 (725)
..++ +|++|+|++|++++..+..+. .+ ++|++|+|++|.+.+. ++..+.. .++|++|+|++|++.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 555555555555544433222 22 3555555555555442 2223333 2355555555555544333
Q ss_pred hh----hhcccccccccccccc
Q 041178 581 IE----VEKLIHLSKLDLSYNF 598 (725)
Q Consensus 581 ~~----~~~l~~L~~L~Ls~N~ 598 (725)
.. +..+++|++|+|++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 22 2333445555555554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.2e-24 Score=230.35 Aligned_cols=245 Identities=18% Similarity=0.220 Sum_probs=124.8
Q ss_pred ccccccCCCCCcEEEcCCCcCCCCCC----ccccCCCCCcEEECcCcc---ccccccccc-------cCCCCCCEEeCcC
Q 041178 387 IPHSIGNLTELVLVNMCENHLSGPIP----KSLRNLTSLERVRFNQNN---LSGKVYEAF-------GYHPNLTFLDLSQ 452 (725)
Q Consensus 387 ~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~~~~L~~L~ls~ 452 (725)
++..+..+++|+.|++++|.++...+ ..+..+++|+.|++++|. +++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44445556666666666666654422 234455566666665542 333333322 3445555555555
Q ss_pred CccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhh----cC---------CCCCe
Q 041178 453 NNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLA----KL---------FSLNK 519 (725)
Q Consensus 453 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~~---------~~L~~ 519 (725)
|.+.+.... .+|..+..+++|++|++++|.+.+..+..+. .+ ++|++
T Consensus 104 n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 104 NAFGPTAQE--------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CCCCTTTHH--------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred CcCCHHHHH--------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 555441000 2333444445555555555554332222222 22 45555
Q ss_pred EeccCceec-CCCC---ccccCcccccccccccccccc-----ccccccccCCCCCEEeCCCCcCc----ccChhhhhcc
Q 041178 520 LILSLNQLS-GGMP---FELGSLTELQYLDLSANKLRS-----WIPKSIGNLLKLRYLNLSNNQFI----QKIPIEVEKL 586 (725)
Q Consensus 520 L~L~~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l 586 (725)
|++++|+++ +.++ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ +.+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 555555554 2222 234445555555555555541 22334555566666666666654 4455555666
Q ss_pred cccccccccccccCcc----Cccccc--CCCCCCEEeCCCCcccc----ccCccc-cCCCCCCEEeCcCCCccccC
Q 041178 587 IHLSKLDLSYNFLGKE----MPFQIC--NMKSLEKLNLCHNNLSG----FIPRCF-EGMHNLSHIDISYNELQGPI 651 (725)
Q Consensus 587 ~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~i 651 (725)
++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6666666666666544 344442 25666666666666665 355555 44566666666666665444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=209.57 Aligned_cols=203 Identities=20% Similarity=0.158 Sum_probs=116.8
Q ss_pred CCCcEEECCCCCCCcc-Cch--hccCCCCCCEEECCCCCCCCCCCccC--cCCCCCCEEEccCCcCCCCCC----ccccC
Q 041178 107 PHLVHLNLSFNIVFGT-IPP--QVGNLSKLQHLDLGNNQLTGVIPPEI--GHLNQLRSLYFDVNQLHGPIP----QEIGQ 177 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~-~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~ 177 (725)
..++.+++.++.+... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466777776665432 111 12234567777777777777777766 777777777777777776544 23345
Q ss_pred CCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCcc--C--ccccCCCCCCCEEEccCCcCcccCCc----cccC
Q 041178 178 LSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDS--I--PLVLGNLKSISTLDLSKNQLSGSIPF----SLGN 249 (725)
Q Consensus 178 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~ 249 (725)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. + +..++.+++|++|++++|+++. ++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 66777777777777666666666677777777777765432 1 1223456666666666666642 111 1345
Q ss_pred CCCCCceeeccccccccCCccccCC---CCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178 250 LSNLGILYLYSNSLSGPIPSVIGNL---ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313 (725)
Q Consensus 250 l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (725)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 5566666666666655555444444 35555555555555 3444332 445555555554443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=215.32 Aligned_cols=202 Identities=19% Similarity=0.146 Sum_probs=157.4
Q ss_pred CCCCCEEeCcCCccccccCccc--cCCCCCcEEECCCCcccccCC----ccccccCCCcEEEccCCcccccCchhhhcCC
Q 041178 442 HPNLTFLDLSQNNFYGEISFNW--RNFPKLGTFIVSMNNISGSIP----LEIGESFKLQVLDISSNHIVGEIPVQLAKLF 515 (725)
Q Consensus 442 ~~~L~~L~ls~n~l~~~~~~~~--~~~~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 515 (725)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457777777777777766666 667777777777777776544 3345677888888888888888888888888
Q ss_pred CCCeEeccCceecCC----CCccccCcccccccccccccccccccc----ccccCCCCCEEeCCCCcCcccChhhhhcc-
Q 041178 516 SLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLRSWIPK----SIGNLLKLRYLNLSNNQFIQKIPIEVEKL- 586 (725)
Q Consensus 516 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l- 586 (725)
+|++|++++|++.+. .+..+..+++|++|++++|+++. ++. .+..+++|++|+|++|++.+.+|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 888888888887642 12334678899999999999874 232 35788999999999999998888877777
Q ss_pred --cccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccc
Q 041178 587 --IHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 587 --~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 649 (725)
++|++|+|++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999997 6777664 7999999999999964 43 6788999999999999864
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7.1e-24 Score=224.13 Aligned_cols=222 Identities=19% Similarity=0.161 Sum_probs=92.9
Q ss_pred EccCCcCccCCcccccCCCCCCEEECcCcccccccc----ccccCCC-CCcEEEcCCCcCCCCCCccccCC-----CCCc
Q 041178 353 YLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIP----HSIGNLT-ELVLVNMCENHLSGPIPKSLRNL-----TSLE 422 (725)
Q Consensus 353 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~l~~l-----~~L~ 422 (725)
+++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|+.|++++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444444444444444444445555555554443333 3334444 45555555554444433333332 4455
Q ss_pred EEECcCccccccccccc----cCC-CCCCEEeCcCCccccccCccc----cC-CCCCcEEECCCCcccccCC----cccc
Q 041178 423 RVRFNQNNLSGKVYEAF----GYH-PNLTFLDLSQNNFYGEISFNW----RN-FPKLGTFIVSMNNISGSIP----LEIG 488 (725)
Q Consensus 423 ~L~l~~n~l~~~~~~~~----~~~-~~L~~L~ls~n~l~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~p----~~~~ 488 (725)
.|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..+ ..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 55555554444333322 222 445555555554443332221 11 2345555555554443221 1222
Q ss_pred ccC-CCcEEEccCCcccccCchhhh----cC-CCCCeEeccCceecCC----CCccccC-ccccccccccccccccccc-
Q 041178 489 ESF-KLQVLDISSNHIVGEIPVQLA----KL-FSLNKLILSLNQLSGG----MPFELGS-LTELQYLDLSANKLRSWIP- 556 (725)
Q Consensus 489 ~l~-~L~~L~Ls~n~l~~~~~~~~~----~~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~- 556 (725)
..+ +|++|++++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+.+..+
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 222 455555555544444433222 22 3455555555544432 1222222 2345555555554443222
Q ss_pred ---cccccCCCCCEEeCCCCc
Q 041178 557 ---KSIGNLLKLRYLNLSNNQ 574 (725)
Q Consensus 557 ---~~~~~l~~L~~L~Ls~n~ 574 (725)
..+..+++|++|++++|.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHhcCCCccEEEeccCC
Confidence 122334445555555544
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4.4e-24 Score=228.01 Aligned_cols=246 Identities=21% Similarity=0.206 Sum_probs=178.8
Q ss_pred CcccccCCCCCCEEECcCcccccccc----ccccCCCCCcEEEcCCC---cCCCCCCccc-------cCCCCCcEEECcC
Q 041178 363 VPEEIGYLKSIFELELCTNRLRGGIP----HSIGNLTELVLVNMCEN---HLSGPIPKSL-------RNLTSLERVRFNQ 428 (725)
Q Consensus 363 ~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~l~~ 428 (725)
++..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++| .+++.+|..+ ..+++|+.|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55667788999999999999987644 45778999999999996 4556667655 6889999999999
Q ss_pred ccccc----cccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCcccccc---------CCCcE
Q 041178 429 NNLSG----KVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGES---------FKLQV 495 (725)
Q Consensus 429 n~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l---------~~L~~ 495 (725)
|.+++ .++..+..+++|++|++++|.+++..+..+.. .+..+ ++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcE
Confidence 99987 46677788899999999999886543332221 11112 55666
Q ss_pred EEccCCccc-ccCc---hhhhcCCCCCeEeccCceecC-----CCCccccCccccccccccccccc----cccccccccC
Q 041178 496 LDISSNHIV-GEIP---VQLAKLFSLNKLILSLNQLSG-----GMPFELGSLTELQYLDLSANKLR----SWIPKSIGNL 562 (725)
Q Consensus 496 L~Ls~n~l~-~~~~---~~~~~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l 562 (725)
|++++|++. +.++ ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 666666665 3333 355566777777777777662 23335667778888888888775 4567777788
Q ss_pred CCCCEEeCCCCcCccc----Chhhhhc--ccccccccccccccCc----cCcccc-cCCCCCCEEeCCCCccccccC
Q 041178 563 LKLRYLNLSNNQFIQK----IPIEVEK--LIHLSKLDLSYNFLGK----EMPFQI-CNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 563 ~~L~~L~Ls~n~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p 628 (725)
++|++|+|++|.+++. +|..+.. +++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8888888888888765 5555633 7888888888888877 477666 567888888888888886654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4.5e-22 Score=197.31 Aligned_cols=197 Identities=18% Similarity=0.192 Sum_probs=148.1
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCC-CCCCCCccCcCCCCCCEEEccC-CcCCCCCCccccCCCCCCEE
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQ-LTGVIPPEIGHLNQLRSLYFDV-NQLHGPIPQEIGQLSLINEL 184 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 184 (725)
++|++|++++|.+.+..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999887777788889999999999996 7766666888899999999988 88887666778888889999
Q ss_pred EcCCCcCCCCCCCCcCCCCCCc---EEEccCC-cCCccCccccCCCCCCC-EEEccCCcCcccCCccccCCCCCCceeec
Q 041178 185 ALCHNNLYGPIPPSLGNLSNLA---NFYLNNN-LLFDSIPLVLGNLKSIS-TLDLSKNQLSGSIPFSLGNLSNLGILYLY 259 (725)
Q Consensus 185 ~L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 259 (725)
++++|.+++ +|+ +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|+++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 988888885 555 77777777 8888888 77766666778888888 8888888877 444433333677777777
Q ss_pred ccc-ccccCCccccCC-CCCCEEEccCCccccccCCCCCCCCCccEEEccCC
Q 041178 260 SNS-LSGPIPSVIGNL-ESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSN 309 (725)
Q Consensus 260 ~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 309 (725)
+|. +++..+..|..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 774 765555666677 777777777777763 3332 4566666666554
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=5.8e-22 Score=197.99 Aligned_cols=181 Identities=24% Similarity=0.205 Sum_probs=148.3
Q ss_pred CcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccc
Q 041178 469 LGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSA 548 (725)
Q Consensus 469 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 548 (725)
.+.++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555555554 3444433 4678888888888877777788888888888888888887777788888888899988
Q ss_pred cccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccC
Q 041178 549 NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIP 628 (725)
Q Consensus 549 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 628 (725)
|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 88888777788888999999999999887777778889999999999999987777788999999999999999998888
Q ss_pred ccccCCCCCCEEeCcCCCccccCC
Q 041178 629 RCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 629 ~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
..|..+++|++|++++|++.+...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHhCCCCCCEEEeeCCceeCCcc
Confidence 889999999999999999987643
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.1e-23 Score=216.22 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=97.4
Q ss_pred CCEEEccCCcCccCCcccccCC--CCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCC-CCccccCCCCCcEEE
Q 041178 349 LRLLYLYNNGFYGFVPEEIGYL--KSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGP-IPKSLRNLTSLERVR 425 (725)
Q Consensus 349 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ 425 (725)
++.++++++.+. +..+..+ +.++.+++++|.+.+..+. +..+++|+.|++++|.+++. ++..+..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566666666554 3333434 5666666666666554443 33455666666666555543 444555555555555
Q ss_pred CcCccccccccccccCCCCCCEEeCcCC-ccccc-cCccccCCCCCcEEECCCC-ccccc-CCccccccC-CCcEEEccC
Q 041178 426 FNQNNLSGKVYEAFGYHPNLTFLDLSQN-NFYGE-ISFNWRNFPKLGTFIVSMN-NISGS-IPLEIGESF-KLQVLDISS 500 (725)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~L~~L~ls~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~p~~~~~l~-~L~~L~Ls~ 500 (725)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 5555555555555555555555555555 34431 3333444445555555544 44432 233344444 455555544
Q ss_pred C--ccc-ccCchhhhcCCCCCeEeccCce-ecCCCCccccCcccccccccccc
Q 041178 501 N--HIV-GEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSLTELQYLDLSAN 549 (725)
Q Consensus 501 n--~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 549 (725)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4 222 2333344444444444444444 33333334444444444444444
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.1e-22 Score=197.62 Aligned_cols=197 Identities=17% Similarity=0.153 Sum_probs=146.4
Q ss_pred CCCEEeCcCCccccccCccccCCCCCcEEECCCCc-ccccCCccccccCCCcEEEccC-CcccccCchhhhcCCCCCeEe
Q 041178 444 NLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNN-ISGSIPLEIGESFKLQVLDISS-NHIVGEIPVQLAKLFSLNKLI 521 (725)
Q Consensus 444 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L~ 521 (725)
++++|++++|++++..+..|.++++|++|++++|+ +++..+..+..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555556666666666666665 5555555667777777777777 777766666777788888888
Q ss_pred ccCceecCCCCccccCccccc---ccccccc-ccccccccccccCCCCC-EEeCCCCcCcccChhhhhcccccccccccc
Q 041178 522 LSLNQLSGGMPFELGSLTELQ---YLDLSAN-KLRSWIPKSIGNLLKLR-YLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596 (725)
Q Consensus 522 L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
+++|++++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+++...+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88888875 554 77777777 8999998 88887777788899999 9999999987444444444 8899999999
Q ss_pred cc-cCccCcccccCC-CCCCEEeCCCCccccccCccccCCCCCCEEeCcCCC
Q 041178 597 NF-LGKEMPFQICNM-KSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 597 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 646 (725)
|+ +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 95 877777788888 9999999999999854 433 56788889888764
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.4e-21 Score=187.64 Aligned_cols=185 Identities=22% Similarity=0.240 Sum_probs=150.0
Q ss_pred CCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178 70 PCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP 149 (725)
Q Consensus 70 ~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 149 (725)
.|.|.+|.|+..+ +. .++ ..-.++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.
T Consensus 6 ~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 4789999997432 11 112 22346899999999999877777789999999999999999977666
Q ss_pred cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCC
Q 041178 150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSI 229 (725)
Q Consensus 150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 229 (725)
.|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 78899999999999999997766778899999999999999987777778889999999999999887766778888999
Q ss_pred CEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCC
Q 041178 230 STLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLES 276 (725)
Q Consensus 230 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 276 (725)
++|++++|.+.+ .+++|++|+++.|.++|.+|..++.++.
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 999999887663 4567888888888888888887776654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.2e-21 Score=198.54 Aligned_cols=193 Identities=26% Similarity=0.371 Sum_probs=99.5
Q ss_pred cCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcE
Q 041178 416 RNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV 495 (725)
Q Consensus 416 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 495 (725)
..+++|+.|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3456667777777766543 2 45566666666666666654433 55566666666666655532 23455555555
Q ss_pred EEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcC
Q 041178 496 LDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQF 575 (725)
Q Consensus 496 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 575 (725)
|++++|++.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++
T Consensus 112 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 5555555544221 4555555555555555543222 4445555555555555544222 44555555555555554
Q ss_pred cccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178 576 IQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 576 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
++..+ +..+++|++|++++|.+++..| +..+++|+.|++++|+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 43222 4444455555555555443322 444445555555555444
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=4.1e-21 Score=197.77 Aligned_cols=194 Identities=29% Similarity=0.400 Sum_probs=109.9
Q ss_pred CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178 104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345667777777666643 33 466667777777777766643 22 66666777777777666642 24666666666
Q ss_pred EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178 184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL 263 (725)
Q Consensus 184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (725)
|++++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCcc
Confidence 66666666542 2 25566666666666666544322 55556666666666655532 22 55555555555555555
Q ss_pred cccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcc
Q 041178 264 SGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSS 313 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (725)
++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 53322 4555555555555555553322 4455555555555555443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.2e-19 Score=190.57 Aligned_cols=239 Identities=18% Similarity=0.145 Sum_probs=102.9
Q ss_pred EEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCC-ccccCCCCCCE-EEcCC
Q 041178 111 HLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIP-QEIGQLSLINE-LALCH 188 (725)
Q Consensus 111 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~ 188 (725)
+++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4445555443 334333 2345555555555553333345555555555555555443333 23444444433 33334
Q ss_pred CcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCC
Q 041178 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIP 268 (725)
Q Consensus 189 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 268 (725)
|++....|..|..+++|++|++++|.+....+..+....++..+++.++ +.+....+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l~~ 146 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTIER 146 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEECT
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccccc
Confidence 4444444444444444444444444444333333333334444444321 23332222
Q ss_pred ccccCCC-CCCEEEccCCccccccCCCCCCCCCccEEEccC-CcCcccCcccccCCCcccccccccccccccCCccCcCC
Q 041178 269 SVIGNLE-SLLQLDLSENQLSGSIPISLGNLSSLTVMSLFS-NSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNL 346 (725)
Q Consensus 269 ~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 346 (725)
..|..+. .++.|++++|+++. +|.......+|+++++.+ |.++.+.+..|..+++|++|++++|+++. +|. ..+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~ 222 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGL 222 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSC
T ss_pred cchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhh
Confidence 3333332 34555555555542 333333344555555543 33333333344555555555555555542 222 112
Q ss_pred CCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178 347 SNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380 (725)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 380 (725)
.+|+.|.+.++.-...+|. +..+++|+.+++.+
T Consensus 223 ~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 3344444333332223332 34445555555543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.8e-20 Score=204.42 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=127.0
Q ss_pred ccCcc-eeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCcc
Q 041178 72 AWVGI-SCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPE 150 (725)
Q Consensus 72 ~w~gv-~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 150 (725)
.|.|+ .|. .++++.++++++.+.+ +|. .+ +++|++|+|++|.+. .+| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 69999 675 3468888888887776 442 23 367777777777776 455 446777777777777775 555
Q ss_pred CcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCC
Q 041178 151 IGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSIS 230 (725)
Q Consensus 151 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 230 (725)
+.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 544 67777777777765 444 45667777777666664 443 35566666666666654 444 43 5666
Q ss_pred EEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCc
Q 041178 231 TLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNS 310 (725)
Q Consensus 231 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 310 (725)
+|++++|.++ .+|. +.. +| ....+.|+.|++++|.++ .+|..+..+++|+.|++++|.
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp EEECCSSCCS-SCCC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred EEECcCCCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 6666666655 3333 221 22 011122377777777776 466666667777888888887
Q ss_pred CcccCcccccCC
Q 041178 311 LSSFIPPILGNL 322 (725)
Q Consensus 311 l~~~~~~~l~~l 322 (725)
+++.+|..+..+
T Consensus 242 l~~~~p~~l~~l 253 (571)
T 3cvr_A 242 LSSRIRESLSQQ 253 (571)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 777777665543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=175.20 Aligned_cols=84 Identities=26% Similarity=0.310 Sum_probs=34.3
Q ss_pred CCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEcc
Q 041178 132 KLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLN 211 (725)
Q Consensus 132 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 211 (725)
+|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333333344444444444444433322223333333333333
Q ss_pred CCcC
Q 041178 212 NNLL 215 (725)
Q Consensus 212 ~n~l 215 (725)
+|.+
T Consensus 109 ~N~l 112 (208)
T 2o6s_A 109 TNQL 112 (208)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 3333
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=8.3e-20 Score=191.81 Aligned_cols=203 Identities=16% Similarity=0.131 Sum_probs=149.8
Q ss_pred CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCC-c
Q 041178 71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIP-P 149 (725)
Q Consensus 71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~ 149 (725)
|+|+.|.|+. .+++ .+| ..+ .+++++|+|++|.++...+.+|.++++|++|+|++|.+.+.+| .
T Consensus 9 C~~~~v~C~~-----------~~Lt-~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQE-----------SKVT-EIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEES-----------TTCC-SCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecC-----------CCCC-ccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 6788888853 2232 233 122 3689999999999987666789999999999999999877666 4
Q ss_pred cCcCCCCCCE-EEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCC-cCCccCccccCCCC
Q 041178 150 EIGHLNQLRS-LYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNN-LLFDSIPLVLGNLK 227 (725)
Q Consensus 150 ~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~ 227 (725)
.|.+++++++ +.+..|+++...|..|.++++|++|++++|.+.+..+..+....++..|++.++ .+....+..|..+.
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 6889999876 666779999888899999999999999999999877777778888999999764 55554445666654
Q ss_pred -CCCEEEccCCcCcccCCccccCCCCCCceeecc-ccccccCCccccCCCCCCEEEccCCcccc
Q 041178 228 -SISTLDLSKNQLSGSIPFSLGNLSNLGILYLYS-NSLSGPIPSVIGNLESLLQLDLSENQLSG 289 (725)
Q Consensus 228 -~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 289 (725)
.++.|++++|+++. ++.......+|+++++.+ |.++...+..|.++++|++|++++|+++.
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 57888888888874 444444556677777765 34443223445666677777777776663
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.5e-19 Score=199.73 Aligned_cols=188 Identities=24% Similarity=0.308 Sum_probs=113.7
Q ss_pred CCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcC
Q 041178 108 HLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALC 187 (725)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 187 (725)
+|++|++++|.+.+ +|..+ +++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---------- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---------- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT----------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc----------
Confidence 55555555555544 44433 245555555555555 344 234555555555555543 333 332
Q ss_pred CCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccC
Q 041178 188 HNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPI 267 (725)
Q Consensus 188 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 267 (725)
+|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +
T Consensus 121 ----------------~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 121 ----------------SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp ----------------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred ----------------CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 45555555554443 333 34555555555555553 333 34566666666666654 4
Q ss_pred CccccCCCCCCEEEccCCccccccCCCCCCCCCc-------cEEEccCCcCcccCcccccCCCcccccccccccccccCC
Q 041178 268 PSVIGNLESLLQLDLSENQLSGSIPISLGNLSSL-------TVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIP 340 (725)
Q Consensus 268 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 340 (725)
|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|.+++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 44 44 67777777777776 4555 443 66 999999999996 67778889999999999999999888
Q ss_pred ccCcCCC
Q 041178 341 SSIGNLS 347 (725)
Q Consensus 341 ~~l~~l~ 347 (725)
..+..++
T Consensus 248 ~~l~~l~ 254 (571)
T 3cvr_A 248 ESLSQQT 254 (571)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8776643
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=175.24 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=131.9
Q ss_pred cEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCC-ccccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMP-FELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572 (725)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
+.+++++|.++. +|..+ ...+++|++++|++++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 34333 2346778888888876644 4578888999999999999887777899999999999999
Q ss_pred CcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
|++++..|..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.+.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998888889999999999999999998889999999999999999999999889999999999999999999998776
Q ss_pred C
Q 041178 653 N 653 (725)
Q Consensus 653 ~ 653 (725)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 4
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=9.1e-19 Score=171.85 Aligned_cols=159 Identities=23% Similarity=0.264 Sum_probs=129.7
Q ss_pred CCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCC
Q 041178 68 INPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVI 147 (725)
Q Consensus 68 ~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 147 (725)
...|+|++|.|+..+ + +.+|. .-.++|++|++++|.+.+..|..|..+++|++|+|++|.++...
T Consensus 16 ~~~Cs~~~v~c~~~~-----------l-~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKR-----------H-ASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TCEEETTEEECTTSC-----------C-SSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCEEeCCEeEccCCC-----------c-CccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence 578999999996322 1 12221 12378999999999999888888999999999999999998666
Q ss_pred CccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCC
Q 041178 148 PPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLK 227 (725)
Q Consensus 148 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 227 (725)
+..|.++++|++|+|++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 667888999999999999998777777888999999999999888 6788888888999999999888776667788888
Q ss_pred CCCEEEccCCcCccc
Q 041178 228 SISTLDLSKNQLSGS 242 (725)
Q Consensus 228 ~L~~L~Ls~n~l~~~ 242 (725)
+|++|++++|.+...
T Consensus 160 ~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCCEEECTTSCBCTT
T ss_pred CCCEEEeeCCCccCC
Confidence 888888888887743
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=3.7e-19 Score=173.41 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=126.2
Q ss_pred cEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCC
Q 041178 494 QVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNN 573 (725)
Q Consensus 494 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 573 (725)
+.++++++.++. +|..+. ++++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 355666666552 333332 46788888888888766777888888888888888888877888888889999999999
Q ss_pred cCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178 574 QFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 574 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
++++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8887666677888999999999999988888889999999999999999998888888999999999999999876543
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=2.1e-20 Score=214.37 Aligned_cols=256 Identities=25% Similarity=0.260 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCcceeCCCCCEEEEEcCCCCCccccCCcccC
Q 041178 25 STKEALALLKWKKSLQNQNSSLLTSWTLYPANATNVSSYSKTKINPCAWVGISCNQAERIISINLSSMGLNGTLQEFAFS 104 (725)
Q Consensus 25 ~~~~~~~ll~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~ 104 (725)
...++++|+++...........-..|. . +.+..+.|.++.+.. ++++++++.++.+..... .
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~--~-- 191 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPT---G----------DSTPSGTATNSAVST-PLTPKIELFANGKDEANQ--A-- 191 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCc---C----------CCCccccCCCceecC-CccceEEeeCCCCCcchh--h--
Confidence 456788999998776443222233453 1 124567899988864 789999998887765321 2
Q ss_pred CCCCCcEEECCCCCCCc---------cCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccc
Q 041178 105 SFPHLVHLNLSFNIVFG---------TIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEI 175 (725)
Q Consensus 105 ~l~~L~~L~Ls~n~~~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 175 (725)
.++.++|+.+.+.+ ..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|
T Consensus 192 ---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 266 (727)
T 4b8c_D 192 ---LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI 266 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG
T ss_pred ---HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh
Confidence 23334444443332 34677899999999999999998 78888889999999999999999 889999
Q ss_pred cCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCC-CC
Q 041178 176 GQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSN-LG 254 (725)
Q Consensus 176 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~ 254 (725)
+++++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..|+.+++|++|+|++|.+++.+|..+..+.. +.
T Consensus 267 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~ 344 (727)
T 4b8c_D 267 KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL 344 (727)
T ss_dssp GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHH
T ss_pred hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhh
Confidence 99999999999999999 77999999999999999999985 77888999999999999999999988888765432 23
Q ss_pred ceeeccccccccCCccccCCCCCCEEEccCC--------ccccccCCCCCCCCCccEEEccCCcC
Q 041178 255 ILYLYSNSLSGPIPSVIGNLESLLQLDLSEN--------QLSGSIPISLGNLSSLTVMSLFSNSL 311 (725)
Q Consensus 255 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L~~n~l 311 (725)
.+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..++...+++|-+
T Consensus 345 ~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 345 IFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HHHHHHCCCCCCCCCC-----------------------------------------------CC
T ss_pred HHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 4789999999888764 455666665 22222333333444444455555544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.3e-18 Score=170.77 Aligned_cols=157 Identities=25% Similarity=0.287 Sum_probs=124.5
Q ss_pred CcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCC
Q 041178 493 LQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSN 572 (725)
Q Consensus 493 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 572 (725)
-+.++.+++++. .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|++....+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666554 3333222 6678888888888877777788888888888888888776666678888888888888
Q ss_pred CcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178 573 NQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 573 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
|++++..+..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++..+..|..+++|++|++++|++.+.++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888777777888888889999999886 678888889999999999999987777788889999999999999987766
Q ss_pred C
Q 041178 653 N 653 (725)
Q Consensus 653 ~ 653 (725)
.
T Consensus 177 ~ 177 (229)
T 3e6j_A 177 D 177 (229)
T ss_dssp G
T ss_pred h
Confidence 3
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=4.7e-19 Score=186.83 Aligned_cols=158 Identities=25% Similarity=0.233 Sum_probs=97.5
Q ss_pred CCcEEEccCCcccccCchhhh-cCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeC
Q 041178 492 KLQVLDISSNHIVGEIPVQLA-KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNL 570 (725)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 570 (725)
.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355566666666555555554 5666666666666666555555666666666666666666655555666666666666
Q ss_pred CCCcCcccChhhhhcccccccccccccccCccCcccc---cCCCCCCEEeCCCCccccccCccccCCCC--CCEEeCcCC
Q 041178 571 SNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQI---CNMKSLEKLNLCHNNLSGFIPRCFEGMHN--LSHIDISYN 645 (725)
Q Consensus 571 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N 645 (725)
++|++.+..|..|..+++|+.|+|++|.+++..+..| ..+++|+.|||++|++++..+..|..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666666666666666666666666666655433333 45667777777777776555555666655 366777777
Q ss_pred Cccc
Q 041178 646 ELQG 649 (725)
Q Consensus 646 ~l~g 649 (725)
++.+
T Consensus 200 ~~~C 203 (361)
T 2xot_A 200 PLEC 203 (361)
T ss_dssp CEEC
T ss_pred CccC
Confidence 7654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.2e-18 Score=175.66 Aligned_cols=149 Identities=25% Similarity=0.365 Sum_probs=76.8
Q ss_pred cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCE
Q 041178 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY 567 (725)
Q Consensus 488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 567 (725)
..+++|++|++++|++++..+ +..+++|++|++++|++++ ++ .+..+++|++|++++|.+.+. ..+..+++|++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~ 138 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES 138 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence 334444444444444443332 4444555555555555443 11 244555555555555555542 23555555555
Q ss_pred EeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCc
Q 041178 568 LNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 568 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 647 (725)
|++++|++++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|++++. | .+..+++|+.|++++|++
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcc
Confidence 55555555443 345555555566666665544433 55556666666666655532 2 255556666666666655
Q ss_pred c
Q 041178 648 Q 648 (725)
Q Consensus 648 ~ 648 (725)
.
T Consensus 213 ~ 213 (291)
T 1h6t_A 213 L 213 (291)
T ss_dssp E
T ss_pred c
Confidence 4
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.1e-18 Score=175.86 Aligned_cols=170 Identities=28% Similarity=0.397 Sum_probs=73.9
Q ss_pred CCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEE
Q 041178 130 LSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFY 209 (725)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 209 (725)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+ + +.+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 34444444444444322 1 23444444444444444443222 4444444444444444432 1 1244444444444
Q ss_pred ccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCcccc
Q 041178 210 LNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSG 289 (725)
Q Consensus 210 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 289 (725)
+++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 444444331 2244444555555555544432 334444455555555554443322 4445555555555555543
Q ss_pred ccCCCCCCCCCccEEEccCCcCcc
Q 041178 290 SIPISLGNLSSLTVMSLFSNSLSS 313 (725)
Q Consensus 290 ~~p~~l~~l~~L~~L~L~~n~l~~ 313 (725)
++ .+..+++|+.|++++|.++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 22 24445555555555554443
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.5e-18 Score=192.13 Aligned_cols=171 Identities=27% Similarity=0.419 Sum_probs=79.4
Q ss_pred CCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 041178 104 SSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINE 183 (725)
Q Consensus 104 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 183 (725)
..+++|++|++++|.+... + .+..+++|++|+|++|.+++..| +..+++|++|+|++|.+++ +| .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 3445555555555554332 2 35555555555555555554322 4555555555555555543 22 3445555555
Q ss_pred EEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccc
Q 041178 184 LALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSL 263 (725)
Q Consensus 184 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 263 (725)
|+|++|.+.+. +.+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555554431 2344444555555555444332 234444444444444444443322 44444444444444444
Q ss_pred cccCCccccCCCCCCEEEccCCccc
Q 041178 264 SGPIPSVIGNLESLLQLDLSENQLS 288 (725)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~L~~n~l~ 288 (725)
++. ..+..+++|+.|++++|.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 432 22444444444444444443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.2e-18 Score=189.52 Aligned_cols=190 Identities=26% Similarity=0.349 Sum_probs=117.8
Q ss_pred CcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCC
Q 041178 109 LVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCH 188 (725)
Q Consensus 109 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 188 (725)
+..+++..+.+....+ +..+++|++|++++|.+.. +| .+..+++|++|+|++|.+++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3334445444443332 3456666667777766663 33 46666777777777776665433 66667777777777
Q ss_pred CcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCC
Q 041178 189 NNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIP 268 (725)
Q Consensus 189 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 268 (725)
|.+.+ + +.+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 76664 2 2566667777777777766542 3466666777777777766643 456666777777777776665544
Q ss_pred ccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCccc
Q 041178 269 SVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSF 314 (725)
Q Consensus 269 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 314 (725)
+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 66666777777777766643 2466666777777777666554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.2e-17 Score=162.67 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=63.8
Q ss_pred cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555553 2333332 45556666666555544445555555555555555555544555555555555555555
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS 240 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 240 (725)
.++...+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 555333333444444444444444444444444444444444444444444
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=162.57 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=42.2
Q ss_pred EEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCC-ccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 111 HLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIP-PEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 111 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
++++++|.+.. +|..+. ..+++|++++|.+++..| ..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555554432 333221 233455555555444322 22344444444444444444333334444444444444444
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcCC
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLLF 216 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~ 216 (725)
.+++..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 443333333333333333333333333
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.7e-18 Score=163.40 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=127.1
Q ss_pred ccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCC
Q 041178 487 IGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLR 566 (725)
Q Consensus 487 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 566 (725)
...+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 355677888888888887 444 5778888888888888665 334788889999999999999887788899999999
Q ss_pred EEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCC
Q 041178 567 YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 567 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 646 (725)
+|++++|++++..|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 99999999988888889999999999999998445666 68899999999999999985 34 78889999999999998
Q ss_pred ccc
Q 041178 647 LQG 649 (725)
Q Consensus 647 l~g 649 (725)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 754
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=175.05 Aligned_cols=128 Identities=22% Similarity=0.246 Sum_probs=75.6
Q ss_pred CEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCcccc-CCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccC
Q 041178 134 QHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIG-QLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNN 212 (725)
Q Consensus 134 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 212 (725)
++++++++.++ .+|..+. +.+++|+|++|.+++..+..+. ++++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777777 4565443 3466777777776655555555 666666666666666655555566666666666666
Q ss_pred CcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccc
Q 041178 213 NLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLS 264 (725)
Q Consensus 213 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 264 (725)
|.+.+..+..|..+++|++|++++|++++..|..|..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 6655554555555555555555555555444444555555555555555444
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=5.3e-18 Score=161.46 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=120.1
Q ss_pred CeEeccCceecCCCCccccCcccccccccccccccccccc-ccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178 518 NKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPK-SIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596 (725)
Q Consensus 518 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
+.+++++|+++ .+|..+. .++++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777775 5565443 3788888888888876554 478888999999999999888888898999999999999
Q ss_pred cccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCCCCCcC---ceeccCCCCCCCCCC
Q 041178 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPNSTTFK---DARMEGNKGLCGNIK 673 (725)
Q Consensus 597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~---~~~~~gn~~lc~~~~ 673 (725)
|.+++..|..|.++++|++|+|++|++++.+|..|..+++|++|++++|++.+.++...... ...+.++...|+.|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99988888888999999999999999999889999999999999999999988776432111 114455666777653
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=4.1e-18 Score=195.32 Aligned_cols=193 Identities=21% Similarity=0.206 Sum_probs=126.1
Q ss_pred eCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceec
Q 041178 449 DLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLS 528 (725)
Q Consensus 449 ~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 528 (725)
+++.|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33344443 44666778888888888888887 67777778999999999999998 78888999999999999999999
Q ss_pred CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccc-cccccccccccCccCcccc
Q 041178 529 GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIH-LSKLDLSYNFLGKEMPFQI 607 (725)
Q Consensus 529 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~ 607 (725)
.+|..+..+++|++|+|++|.++. +|..|+.+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred -ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 779999999999999999999975 7888999999999999999999999998876533 23589999999998885
Q ss_pred cCCCCCCEEeCCCC--------ccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178 608 CNMKSLEKLNLCHN--------NLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 608 ~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
.|+.|++++| .+.+..+..+..+..+....+++|-+.+...
T Consensus 360 ----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 360 ----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ----C-----------------------------------------CCCGGGC
T ss_pred ----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 4667778777 4445555556677777888899998865443
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.1e-17 Score=160.23 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=85.7
Q ss_pred cCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcE
Q 041178 128 GNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLAN 207 (725)
Q Consensus 128 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 207 (725)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34445555555555555 333 3555555555555555433 2234555555566666555555545555566666666
Q ss_pred EEccCCcCCccCccccCCCCCCCEEEccCCc-CcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCc
Q 041178 208 FYLNNNLLFDSIPLVLGNLKSISTLDLSKNQ-LSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQ 286 (725)
Q Consensus 208 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 286 (725)
|++++|.+.+..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666655555556666666666666665 33 333 466666666666666666542 2 46666677777777766
Q ss_pred cc
Q 041178 287 LS 288 (725)
Q Consensus 287 l~ 288 (725)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.2e-20 Score=207.50 Aligned_cols=106 Identities=29% Similarity=0.289 Sum_probs=55.7
Q ss_pred CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596 (725)
Q Consensus 517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5555555555553 343 555555555555555555 245555555555555555555544 34 455555555555555
Q ss_pred cccCccC-cccccCCCCCCEEeCCCCcccccc
Q 041178 597 NFLGKEM-PFQICNMKSLEKLNLCHNNLSGFI 627 (725)
Q Consensus 597 N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~ 627 (725)
|.+++.+ |..++.+++|+.|+|++|++++.+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 5555444 555555555555555555555443
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1e-17 Score=167.98 Aligned_cols=169 Identities=24% Similarity=0.361 Sum_probs=108.6
Q ss_pred CCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 041178 106 FPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELA 185 (725)
Q Consensus 106 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 185 (725)
+.+++.++++.+.+.+.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 444555666666665432 4666777777777777776 344 56677777777777777775433 77777777777
Q ss_pred cCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccc
Q 041178 186 LCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSG 265 (725)
Q Consensus 186 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 265 (725)
+++|.+++ +|. +.. ++|++|++++|.+.+. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+++
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 77777764 232 222 6777777777776553 2 466777777777777777643 2 46666666666666666665
Q ss_pred cCCccccCCCCCCEEEccCCcccc
Q 041178 266 PIPSVIGNLESLLQLDLSENQLSG 289 (725)
Q Consensus 266 ~~p~~l~~l~~L~~L~L~~n~l~~ 289 (725)
. ..+..+++|+.|++++|.+++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 4 445666666666666666653
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.6e-17 Score=165.05 Aligned_cols=167 Identities=23% Similarity=0.211 Sum_probs=84.7
Q ss_pred CCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEec
Q 041178 443 PNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLIL 522 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 522 (725)
.++..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34455566666655433 34555666666666665552 33 45555556666666655554433 555555555555
Q ss_pred cCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCcc
Q 041178 523 SLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKE 602 (725)
Q Consensus 523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 602 (725)
++|++++. |.. .. ++|++|++++|.+++. + .+..+++|++|++++|++++. + .++.+++|++|++++|.+++.
T Consensus 93 ~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Ccc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 55555532 211 11 5555555555555542 2 345555555555555555432 2 344455555555555555433
Q ss_pred CcccccCCCCCCEEeCCCCccc
Q 041178 603 MPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 603 ~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
..+..+++|+.|++++|+++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 33444555555555555544
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.7e-19 Score=196.16 Aligned_cols=192 Identities=18% Similarity=0.142 Sum_probs=143.1
Q ss_pred cCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCe
Q 041178 440 GYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNK 519 (725)
Q Consensus 440 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 519 (725)
..+++|+.|++++|++. .+|..++.+++|+.|++++|......|... ..+...+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 44667777777777765 456666666666666665543111111000 001134455555666666666
Q ss_pred Ee-ccCc-------------eecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhc
Q 041178 520 LI-LSLN-------------QLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEK 585 (725)
Q Consensus 520 L~-L~~n-------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 585 (725)
|+ ++.| .++.. | ...|+.|+|++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred Ccchhhcccchhhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 65 4444 34321 1 1358999999999998 676 999999999999999998 88999999
Q ss_pred ccccccccccccccCccCcccccCCCCCCEEeCCCCcccccc-CccccCCCCCCEEeCcCCCccccCCCC
Q 041178 586 LIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFI-PRCFEGMHNLSHIDISYNELQGPIPNS 654 (725)
Q Consensus 586 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~~ 654 (725)
+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.+ |..|..+++|+.|++++|++++..|..
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999999977 77 8999999999999999999887 999999999999999999999887743
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.8e-17 Score=172.43 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=130.8
Q ss_pred CCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcc----cccCCccccccCCC
Q 041178 418 LTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNI----SGSIPLEIGESFKL 493 (725)
Q Consensus 418 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~----~~~~p~~~~~l~~L 493 (725)
|++|+.+++.+ .++.....+|.++++|+.+++++|.+....+..|.++.++..+....+.. ....+..+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55566666655 55555555566666666666666665555555565555555554443211 11223344455555
Q ss_pred c-EEEccCCcccccCchhhh----cCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEE
Q 041178 494 Q-VLDISSNHIVGEIPVQLA----KLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYL 568 (725)
Q Consensus 494 ~-~L~Ls~n~l~~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 568 (725)
+ .+.+.... .++..+. ...+++.+.+.++-...........+++|+.++|++|+++.+.+.+|.+|++|++|
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5 44443321 1222111 23344555544431110011111236778888888877777666778888888888
Q ss_pred eCCCCcCcccChhhhhcccccc-cccccccccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEe
Q 041178 569 NLSNNQFIQKIPIEVEKLIHLS-KLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHID 641 (725)
Q Consensus 569 ~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 641 (725)
++++| +...-+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|++....+..|.++++|+.++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 88777 6666666778888887 888877 66666667888888888888888888877777888888888776
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.4e-17 Score=173.26 Aligned_cols=222 Identities=13% Similarity=0.014 Sum_probs=162.3
Q ss_pred CCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCcc----ccccCccccCCCCC
Q 041178 394 LTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNF----YGEISFNWRNFPKL 469 (725)
Q Consensus 394 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l----~~~~~~~~~~~~~L 469 (725)
|++|+.+++.. .++..-+..|.+|++|+.+++.+|.+....+.+|..+.++..+....+.. .......|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888877 66666666788888888888888888777777788777777777665322 22234456667777
Q ss_pred c-EEECCCCcc-cccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccc
Q 041178 470 G-TFIVSMNNI-SGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLS 547 (725)
Q Consensus 470 ~-~L~l~~n~~-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 547 (725)
+ .+.+..... ...+...-....+++.+.+.++-...........|++|+.+++++|+++...+.+|.++++|+.++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 6 444443211 11111111124566777776653222222222348999999999999997777889999999999999
Q ss_pred ccccccccccccccCCCCC-EEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeC
Q 041178 548 ANKLRSWIPKSIGNLLKLR-YLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNL 618 (725)
Q Consensus 548 ~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 618 (725)
+| +..+.+.+|.+|++|+ .+++++ .++..-+.+|.+|++|+.+++++|.++...+..|.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 8887788999999999 999998 777777889999999999999999998888889999999999874
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.8e-16 Score=146.19 Aligned_cols=134 Identities=24% Similarity=0.261 Sum_probs=109.0
Q ss_pred CCCCCeEeccCceec-CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccc
Q 041178 514 LFSLNKLILSLNQLS-GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKL 592 (725)
Q Consensus 514 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 592 (725)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356778888888877 66777778888888888888888775 678888888899999888888788888888899999
Q ss_pred cccccccCccC-cccccCCCCCCEEeCCCCccccccC---ccccCCCCCCEEeCcCCCccc
Q 041178 593 DLSYNFLGKEM-PFQICNMKSLEKLNLCHNNLSGFIP---RCFEGMHNLSHIDISYNELQG 649 (725)
Q Consensus 593 ~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~g 649 (725)
++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999886642 2678889999999999999986655 478889999999999998753
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=9.9e-16 Score=145.64 Aligned_cols=108 Identities=25% Similarity=0.319 Sum_probs=53.6
Q ss_pred CCcEEECCCCCCCccCch-hccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 108 HLVHLNLSFNIVFGTIPP-QVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 108 ~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
++++|++++|.+.+..+. .|+.+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555555555555444432 2555555555555555555555555555555555555555555444444444444444444
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcC
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLL 215 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 215 (725)
++|.+++..|..+..+++|++|++++|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 44444444444444444444444444433
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.8e-16 Score=144.25 Aligned_cols=128 Identities=22% Similarity=0.260 Sum_probs=104.9
Q ss_pred CCCCeEeccCceec-CCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccc
Q 041178 515 FSLNKLILSLNQLS-GGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLD 593 (725)
Q Consensus 515 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 593 (725)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777888888777 66777777888888888888888775 6788888899999999988887888888888999999
Q ss_pred ccccccCcc-CcccccCCCCCCEEeCCCCccccccC---ccccCCCCCCEEeCcC
Q 041178 594 LSYNFLGKE-MPFQICNMKSLEKLNLCHNNLSGFIP---RCFEGMHNLSHIDISY 644 (725)
Q Consensus 594 Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~ 644 (725)
+++|.+++. .|..++.+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999998764 34778889999999999999987665 5788889999998864
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.1e-16 Score=145.03 Aligned_cols=133 Identities=22% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCCCcEEECCCCCCC-ccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 041178 106 FPHLVHLNLSFNIVF-GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL 184 (725)
Q Consensus 106 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 184 (725)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777765 56666666677777777777776654 556666777777777776665566655566666666
Q ss_pred EcCCCcCCCCC-CCCcCCCCCCcEEEccCCcCCccCc---cccCCCCCCCEEEccCCcCc
Q 041178 185 ALCHNNLYGPI-PPSLGNLSNLANFYLNNNLLFDSIP---LVLGNLKSISTLDLSKNQLS 240 (725)
Q Consensus 185 ~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~ 240 (725)
++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666665431 1445555556666666555544333 24555555555555555544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=146.39 Aligned_cols=131 Identities=27% Similarity=0.310 Sum_probs=108.5
Q ss_pred CeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccccc
Q 041178 518 NKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYN 597 (725)
Q Consensus 518 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 597 (725)
+.+++++|.++ .+|..+. ++|++|++++|.++. +|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667777766 4554442 578888888888875 6678888889999999999988888888889999999999999
Q ss_pred ccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178 598 FLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 598 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9988888889999999999999999997777788999999999999999986554
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=4.1e-14 Score=150.13 Aligned_cols=240 Identities=11% Similarity=0.081 Sum_probs=114.1
Q ss_pred CCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 107 PHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 107 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
..++.+.+..+ +...-..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .++...+.+|.+|++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 45555555432 333333455554 5666666554 443444455553 466666654 444444455666666666666
Q ss_pred CCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeecccccccc
Q 041178 187 CHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGP 266 (725)
Q Consensus 187 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 266 (725)
++|.++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++..-...|.+ .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 66555533333333 456666666533 44444455556666666665542 33333334444 455555552 334333
Q ss_pred CCccccCCCCCCEEEccCCccc-----cccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCc
Q 041178 267 IPSVIGNLESLLQLDLSENQLS-----GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPS 341 (725)
Q Consensus 267 ~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 341 (725)
...+|.+|++|+.+++.++.+. ...+..|.++++|+.+++. +.++.+...+|.+|++|+.+.+..+ ++..-+.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4445555555555555544332 2223344444444444444 2233333344444444444444322 3323333
Q ss_pred cCcCCCCCCEEEccCCcC
Q 041178 342 SIGNLSNLRLLYLYNNGF 359 (725)
Q Consensus 342 ~l~~l~~L~~L~L~~n~l 359 (725)
+|.++ +|+.+++.+|..
T Consensus 341 aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SSSSS-CCCEEEECCSSC
T ss_pred hCCCC-CCCEEEEcCCCC
Confidence 44444 444444444433
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=1.2e-15 Score=143.12 Aligned_cols=134 Identities=24% Similarity=0.219 Sum_probs=105.5
Q ss_pred CCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178 517 LNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596 (725)
Q Consensus 517 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
.+.+++++++++ .+|..+ .++|++|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666666 344333 36778888888888776666678888888888888888877777778888888888888
Q ss_pred cccCccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178 597 NFLGKEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.+.+|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 888877777788899999999999999877666678899999999999999887763
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.7e-16 Score=142.15 Aligned_cols=127 Identities=21% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCCCcEEECCCCCCC-ccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 041178 106 FPHLVHLNLSFNIVF-GTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINEL 184 (725)
Q Consensus 106 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 184 (725)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356666677666665 56666666666666666666666644 456666666666666666665555555556666666
Q ss_pred EcCCCcCCCC-CCCCcCCCCCCcEEEccCCcCCccCc---cccCCCCCCCEEEc
Q 041178 185 ALCHNNLYGP-IPPSLGNLSNLANFYLNNNLLFDSIP---LVLGNLKSISTLDL 234 (725)
Q Consensus 185 ~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L 234 (725)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6666665542 22444555555555555555444333 23444444444444
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=3e-14 Score=151.96 Aligned_cols=237 Identities=10% Similarity=0.021 Sum_probs=105.5
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCC
Q 041178 221 LVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSS 300 (725)
Q Consensus 221 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 300 (725)
.+|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +.......|.++..|+.+.+..+... +........+
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 445555566666554332 2233344555556665555443 33333445555666665555544321 2223333455
Q ss_pred ccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcC
Q 041178 301 LTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCT 380 (725)
Q Consensus 301 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 380 (725)
|+.+.+... ++.+....+..+..++.+.+..+... .....|..+..++.+....+.+. ...+..+.+|+.+.+.+
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence 555555332 22223344555555555555444332 33344555555555554433211 12333444454444433
Q ss_pred ccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccC
Q 041178 381 NRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEIS 460 (725)
Q Consensus 381 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 460 (725)
+ ++..-..+|.+|.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++....
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-------------------------v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-------------------------VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-------------------------CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-------------------------ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 2 22222333444444444444322 33333344445555555555433 333334
Q ss_pred ccccCCCCCcEEECCCCcccccCCccccccCCCcE
Q 041178 461 FNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQV 495 (725)
Q Consensus 461 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 495 (725)
.+|.+|++|+.+++..+- . .+..+|.++++|+.
T Consensus 360 ~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred HHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 445555555555554321 1 12234555555544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=9.2e-15 Score=137.09 Aligned_cols=132 Identities=24% Similarity=0.301 Sum_probs=79.9
Q ss_pred CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCcc
Q 041178 71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPE 150 (725)
Q Consensus 71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 150 (725)
|.|+++.|+.. ++.. ++ ....++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..
T Consensus 7 C~~~~l~~~~~-----------~l~~-~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 7 CSGTEIRCNSK-----------GLTS-VP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp EETTEEECCSS-----------CCSS-CC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred eCCCEEEecCC-----------CCcc-CC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence 78998888632 1211 12 112356777777777776655556677777777777777777555555
Q ss_pred CcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCc
Q 041178 151 IGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFD 217 (725)
Q Consensus 151 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 217 (725)
|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666677777776666665555555666666666666666654444334555555555555555443
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=7.2e-14 Score=148.99 Aligned_cols=331 Identities=11% Similarity=0.002 Sum_probs=153.4
Q ss_pred CCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCC
Q 041178 147 IPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNL 226 (725)
Q Consensus 147 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 226 (725)
-..+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 3346667777777777533 44344455666666666666543 33233344555555554444322 212222223322
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEc
Q 041178 227 KSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSL 306 (725)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 306 (725)
. .++..... ........+|.++++|+.+.+.++. .......|.++.+|+.+.+
T Consensus 140 ~------------------------~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 140 D------------------------FKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp C------------------------CSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCC
T ss_pred c------------------------ccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEc
Confidence 2 11111111 1111223445566666666665432 2233445556666666666
Q ss_pred cCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCcccccc
Q 041178 307 FSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGG 386 (725)
Q Consensus 307 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 386 (725)
..+ ++.+...+|.++..|+.+.+..+... +........+|+.+.+... ++..-...+..+..++.+.+..+... .
T Consensus 193 ~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i 267 (394)
T 4fs7_A 193 PRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-I 267 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-E
T ss_pred CCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-e
Confidence 544 34444455666666666665544332 1222333455666665432 22222233445555555555444322 2
Q ss_pred ccccccCCCCCcEEEcCCCcCCCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCC
Q 041178 387 IPHSIGNLTELVLVNMCENHLSGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNF 466 (725)
Q Consensus 387 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 466 (725)
....+..+..++.+....+.+. ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++..
T Consensus 268 ~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I-------- 334 (394)
T 4fs7_A 268 GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI-------- 334 (394)
T ss_dssp CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE--------
T ss_pred eccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE--------
Confidence 3334455555555544433221 123444555555554332 33333344444555555554322 3322
Q ss_pred CCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccc
Q 041178 467 PKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYL 544 (725)
Q Consensus 467 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 544 (725)
-..+|.+|.+|+.+++..+ ++......|.+|.+|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 335 ----------------~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 335 ----------------GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ----------------CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ----------------hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 3344555555555555443 44344445666666666666543 22 223456666666543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.1e-13 Score=146.80 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=144.5
Q ss_pred CCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEE
Q 041178 129 NLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANF 208 (725)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 208 (725)
.+..++.+.+.++ ++..-..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+.+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3466666666653 443444566664 5777777655 554444555553 577777764 4444445566666777777
Q ss_pred EccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccccCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccc
Q 041178 209 YLNNNLLFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSLGNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLS 288 (725)
Q Consensus 209 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 288 (725)
++++|.+.......|. +.+|+.+.+..+ ++..-...|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7766666554444454 466666666533 44444455666666666666543 33333444444 456666653 2344
Q ss_pred cccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccccccccccccccCCccCcCCCCCCEEEccCCcCccCCccccc
Q 041178 289 GSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSALGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIG 368 (725)
Q Consensus 289 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 368 (725)
...+..|.++++|+.+++.++.+.. +......+.+|.++++|+.+.+.+ .+...-...|.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred EEChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 3444555555566666555544430 000012233445555555555542 23333344455
Q ss_pred CCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcCCCCCCccccCCC-CCcEEECcCccc
Q 041178 369 YLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHLSGPIPKSLRNLT-SLERVRFNQNNL 431 (725)
Q Consensus 369 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l 431 (725)
++++|+.+.+..+ ++..-+.+|.++ +|+.+++.+|......+..|.+++ .++.+++..+.+
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5555555555333 333344556666 666666666665554555565553 566777666543
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.9e-14 Score=135.38 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=86.2
Q ss_pred cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
++++++++.+. .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777664 3454432 56777777777776 56667777777777777777777666666777777777777777
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLLFDSIPLVLGNLKSISTLDLSKNQLS 240 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 240 (725)
.+++..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666667777777777777766555555666666666666666654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=7.6e-17 Score=154.36 Aligned_cols=152 Identities=24% Similarity=0.262 Sum_probs=113.0
Q ss_pred cCCCcEEEccCCcccccCch------hhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCC
Q 041178 490 SFKLQVLDISSNHIVGEIPV------QLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLL 563 (725)
Q Consensus 490 l~~L~~L~Ls~n~l~~~~~~------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 563 (725)
...++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCC
Confidence 33445555555555555444 77888888888888888886 56 77788888888888888875 666777778
Q ss_pred CCCEEeCCCCcCcccChhhhhcccccccccccccccCccCc-ccccCCCCCCEEeCCCCccccccCcc----------cc
Q 041178 564 KLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMP-FQICNMKSLEKLNLCHNNLSGFIPRC----------FE 632 (725)
Q Consensus 564 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~ 632 (725)
+|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++.+|.. +.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 88888888888875 44 68888888888888888865432 46788888888888888888776653 77
Q ss_pred CCCCCCEEeCcCCCcc
Q 041178 633 GMHNLSHIDISYNELQ 648 (725)
Q Consensus 633 ~l~~L~~L~ls~N~l~ 648 (725)
.+++|++|| +|+++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 788888887 55554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=7.3e-15 Score=137.56 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=91.2
Q ss_pred hcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccc
Q 041178 512 AKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSK 591 (725)
Q Consensus 512 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 591 (725)
..+.+|+.|++++|+++. +|......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345556666666666663 343222233777777777777764 46777777888888888777665555677788888
Q ss_pred ccccccccCccCcc--cccCCCCCCEEeCCCCccccccCcc----ccCCCCCCEEeCcCCCcc
Q 041178 592 LDLSYNFLGKEMPF--QICNMKSLEKLNLCHNNLSGFIPRC----FEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 592 L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~ 648 (725)
|++++|.+ +.+|. .+..+++|+.|++++|+++ .+|.. +..+++|++||+++|...
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888887 44554 6778888888888888887 44553 778888888888888765
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.7e-16 Score=150.57 Aligned_cols=132 Identities=24% Similarity=0.222 Sum_probs=87.9
Q ss_pred cccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCC
Q 041178 486 EIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKL 565 (725)
Q Consensus 486 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 565 (725)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 55666666666666666665 44 6666677777777777776 456666666777777777777766 34 46667777
Q ss_pred CEEeCCCCcCcccCh-hhhhcccccccccccccccCccCccc----------ccCCCCCCEEeCCCCccc
Q 041178 566 RYLNLSNNQFIQKIP-IEVEKLIHLSKLDLSYNFLGKEMPFQ----------ICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 566 ~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~ 624 (725)
++|++++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.|| +|.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777754322 35667777777777777776665542 67778888776 55554
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.1e-14 Score=134.40 Aligned_cols=132 Identities=18% Similarity=0.106 Sum_probs=82.0
Q ss_pred cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCE
Q 041178 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRY 567 (725)
Q Consensus 488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 567 (725)
..+.+|++|++++|++... +......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3445555666666655532 33222233666666666666643 45666677777777777776644444567777777
Q ss_pred EeCCCCcCcccChh--hhhcccccccccccccccCccCcc----cccCCCCCCEEeCCCCccc
Q 041178 568 LNLSNNQFIQKIPI--EVEKLIHLSKLDLSYNFLGKEMPF----QICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 568 L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~ 624 (725)
|++++|++. .+|. .+..+++|+.|++++|.++ .+|. .+..+++|+.||+++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777763 4444 5667777777777777774 3444 3677777777777777664
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=8.9e-14 Score=129.13 Aligned_cols=110 Identities=25% Similarity=0.302 Sum_probs=84.8
Q ss_pred cccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCC
Q 041178 541 LQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCH 620 (725)
Q Consensus 541 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 620 (725)
.+.+++++|.++. +|..+ .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566677776665 45444 26778888888888777777788888888888888888777777778888888888888
Q ss_pred CccccccCccccCCCCCCEEeCcCCCccccCCC
Q 041178 621 NNLSGFIPRCFEGMHNLSHIDISYNELQGPIPN 653 (725)
Q Consensus 621 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 653 (725)
|++++..+..|..+++|++|++++|++.+..+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 888877777788888888888888888876653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=3.1e-13 Score=125.85 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=74.5
Q ss_pred ccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCC
Q 041178 542 QYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHN 621 (725)
Q Consensus 542 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 621 (725)
+.+++++|.+.. +|..+. ++|++|+|++|++.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455666665544 444332 56777777777777666777777777777777777776655555677778888888888
Q ss_pred ccccccCccccCCCCCCEEeCcCCCccccCC
Q 041178 622 NLSGFIPRCFEGMHNLSHIDISYNELQGPIP 652 (725)
Q Consensus 622 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 652 (725)
++++..+..|..+++|++|++++|++.+..+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8876666567778888888888888775544
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.2e-12 Score=118.54 Aligned_cols=103 Identities=27% Similarity=0.297 Sum_probs=46.6
Q ss_pred cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
+++++++|.+.. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555432 33333 144555555555555444444444555555555555444333333444444444444444
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcC
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLL 215 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l 215 (725)
++++..+..+..+++|++|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 44433333344444444444444433
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=1.4e-10 Score=123.51 Aligned_cols=331 Identities=8% Similarity=0.029 Sum_probs=151.8
Q ss_pred CccccCCC-CCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccCCc---CCccCccccCCCCCCCEEEccCCcCcccCCccc
Q 041178 172 PQEIGQLS-LINELALCHNNLYGPIPPSLGNLSNLANFYLNNNL---LFDSIPLVLGNLKSISTLDLSKNQLSGSIPFSL 247 (725)
Q Consensus 172 p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l 247 (725)
..+|.++. .|+.+.+..+ ++..-..+|.+|++|+.+.+..+. +......+|..+.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44566664 5888887653 554555667777777777776653 33333455566666665555432 232333344
Q ss_pred cCCCCCCceeeccccccccCCccccCCCCCCEEEccCCccccccCCCCCCCCCccEEEccCCcCcccCcccccCCCcccc
Q 041178 248 GNLSNLGILYLYSNSLSGPIPSVIGNLESLLQLDLSENQLSGSIPISLGNLSSLTVMSLFSNSLSSFIPPILGNLKSLSA 327 (725)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 327 (725)
..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.+...+|.. .+|+.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-------------------------~~~I~~~aF~~-~~l~~ 186 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-------------------------VTAIEERAFTG-TALTQ 186 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-------------------------CCEECTTTTTT-CCCSE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-------------------------eeEeccccccc-cceeE
Confidence 45555555555322 22223334444455555544432 22222222322 23444
Q ss_pred cccccccccccCCccCcCCCCCCEEEccCCcCccCCcccccCCCCCCEEECcCccccccccccccCCCCCcEEEcCCCcC
Q 041178 328 LGLHINQLNGVIPSSIGNLSNLRLLYLYNNGFYGFVPEEIGYLKSIFELELCTNRLRGGIPHSIGNLTELVLVNMCENHL 407 (725)
Q Consensus 328 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 407 (725)
+.+..+... ....++..+..++......+......-..+.......... ..+.....+..+.+.. .+
T Consensus 187 i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~v 253 (394)
T 4gt6_A 187 IHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-GV 253 (394)
T ss_dssp EEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-TE
T ss_pred EEECCcccc-cccchhhhccccceecccccccccccceeecccccccccc-----------cccccccccceEEcCC-cc
Confidence 443322211 2233444455555544433322111000000000000000 0000111122222211 11
Q ss_pred CCCCCccccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccc
Q 041178 408 SGPIPKSLRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEI 487 (725)
Q Consensus 408 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~ 487 (725)
+..-...|.++..|+.+.+..+. ......+|.++++|+.+.+. +.++......|.+|.+|+.+.+..+ ++..-..+|
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred eEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 11122344555555555554332 22334455566666666664 3344444555666677777766543 443445567
Q ss_pred cccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcccccccccccccc
Q 041178 488 GESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKL 551 (725)
Q Consensus 488 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 551 (725)
.+|.+|+.+.+..+ ++......|.+|.+|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 77777777777543 555556677888888888887765431 3455677777777766544
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=5.4e-12 Score=117.39 Aligned_cols=103 Identities=29% Similarity=0.394 Sum_probs=55.8
Q ss_pred cEEECCCCCCCccCchhccCCCCCCEEECCCCCCCCCCCccCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCC
Q 041178 110 VHLNLSFNIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPPEIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHN 189 (725)
Q Consensus 110 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (725)
+.+++++|.+ +.+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4566666665 34444442 56666666666666555555666666666666666655443344455555555555555
Q ss_pred cCCCCCCCCcCCCCCCcEEEccCCcC
Q 041178 190 NLYGPIPPSLGNLSNLANFYLNNNLL 215 (725)
Q Consensus 190 ~l~~~~p~~l~~l~~L~~L~L~~n~l 215 (725)
.+.+..+..+..+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 55543333344455555555554444
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=7.6e-11 Score=125.51 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=70.4
Q ss_pred CccccCCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCcc
Q 041178 460 SFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLT 539 (725)
Q Consensus 460 ~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 539 (725)
...|.++..|+.+.+..+.. .....++.++..|+.+.+. +.+.......|.+|.+|+.+++..+ ++..-..+|.+|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 33455555555555543322 1233445556666666664 2344444556666777777776654 3334455677777
Q ss_pred ccccccccccccccccccccccCCCCCEEeCCCCcCcccChhhhhccccccccccccccc
Q 041178 540 ELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSYNFL 599 (725)
Q Consensus 540 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 599 (725)
+|+.+.+..+ ++.+...+|.+|++|+.+++.++... ...+..+.+|+.+.+..|.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 7777777543 55545567777777777777776532 13455666777776665544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.8e-13 Score=143.86 Aligned_cols=157 Identities=21% Similarity=0.222 Sum_probs=83.8
Q ss_pred CCcEEEccCCcccccCchhhhc-----CCCCCeEeccCceecCCCCccc-cCcccccccccccccccccccccc-----c
Q 041178 492 KLQVLDISSNHIVGEIPVQLAK-----LFSLNKLILSLNQLSGGMPFEL-GSLTELQYLDLSANKLRSWIPKSI-----G 560 (725)
Q Consensus 492 ~L~~L~Ls~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-----~ 560 (725)
.|+.|++++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4555555555554333222222 1455566666665543211111 234456666666666654333222 2
Q ss_pred cCCCCCEEeCCCCcCccc----ChhhhhcccccccccccccccCcc----CcccccCCCCCCEEeCCCCccccc----cC
Q 041178 561 NLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNLSGF----IP 628 (725)
Q Consensus 561 ~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p 628 (725)
..++|++|+|++|.++.. ++..+..+++|++|+|++|.++.. ++..+...++|++|+|++|.++.. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 345666777776666432 333445566677777777766432 244455566777777777776642 33
Q ss_pred ccccCCCCCCEEeCcCCCcc
Q 041178 629 RCFEGMHNLSHIDISYNELQ 648 (725)
Q Consensus 629 ~~l~~l~~L~~L~ls~N~l~ 648 (725)
..+...++|++||+++|++.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCC
T ss_pred HHHHhCCCCCEEeccCCCCC
Confidence 34445566777777777664
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=2.1e-13 Score=143.29 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCCEEeCcCCccccccCcccc-----CCCCCcEEECCCCcccccCCccccccCCCcEEEccCCcccccCchhhhcCCCC
Q 041178 443 PNLTFLDLSQNNFYGEISFNWR-----NFPKLGTFIVSMNNISGSIPLEIGESFKLQVLDISSNHIVGEIPVQLAKLFSL 517 (725)
Q Consensus 443 ~~L~~L~ls~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 517 (725)
+.|++|++++|.++......+. ..++|+.|++++|.++......+ ...+++|
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-----------------------~~~L~~L 128 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-----------------------LPVFLRA 128 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-----------------------HHHHHTE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-----------------------HHHHHhc
Confidence 5677777777776643322221 12455555555555433211111 1123344
Q ss_pred CeEeccCceecCCCCccc-----cCccccccccccccccccc----cccccccCCCCCEEeCCCCcCccc----Chhhhh
Q 041178 518 NKLILSLNQLSGGMPFEL-----GSLTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQFIQK----IPIEVE 584 (725)
Q Consensus 518 ~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~ 584 (725)
+.|+|++|.+++.....+ ...++|++|+|++|.++.. ++..+..+++|++|+|++|.+... ++..+.
T Consensus 129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 555555554443222221 1235566666666665432 233345566667777777666532 244455
Q ss_pred cccccccccccccccCcc----CcccccCCCCCCEEeCCCCccccccCccc
Q 041178 585 KLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNLSGFIPRCF 631 (725)
Q Consensus 585 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 631 (725)
..++|++|+|++|.++.. ++..+...++|++|||++|.++..-...+
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 566677777777776543 33344456777777777777765444333
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.4e-11 Score=128.87 Aligned_cols=103 Identities=22% Similarity=0.224 Sum_probs=61.2
Q ss_pred eEeccCc-eecCCCCccccCccccccccccc-cccccccccccccCCCCCEEeCCCCcCcccChhhhhcccccccccccc
Q 041178 519 KLILSLN-QLSGGMPFELGSLTELQYLDLSA-NKLRSWIPKSIGNLLKLRYLNLSNNQFIQKIPIEVEKLIHLSKLDLSY 596 (725)
Q Consensus 519 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 596 (725)
.++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3456665 555 3555 66666666666664 666665555666666666666666666666666666666666666666
Q ss_pred cccCccCcccccCCCCCCEEeCCCCccc
Q 041178 597 NFLGKEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 597 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
|+|++..+..+..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666554444444443 666666666554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=7.5e-11 Score=123.31 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=70.1
Q ss_pred CccCcceeCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCC-CCCCccCchhccCCCCCCEEECCCCCCCCCCCc
Q 041178 71 CAWVGISCNQAERIISINLSSMGLNGTLQEFAFSSFPHLVHLNLSF-NIVFGTIPPQVGNLSKLQHLDLGNNQLTGVIPP 149 (725)
Q Consensus 71 C~w~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 149 (725)
|.|.+|.|...+ ++.+ +| . +..+++|++|+|++ |.+.+..+..|+++++|++|+|++|++++..|.
T Consensus 8 C~~~~v~~~~~n----------~l~~-ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 8 HGSSGLRCTRDG----------ALDS-LH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp SSSSCEECCSSC----------CCTT-TT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred ccCCEEEcCCCC----------CCCc-cC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence 888888885321 2332 44 2 66677777777775 777766666777777777777777777776666
Q ss_pred cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcCCCcCC
Q 041178 150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELALCHNNLY 192 (725)
Q Consensus 150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 192 (725)
.|.++++|++|+|++|++++..+..+..++ |++|++.+|.+.
T Consensus 75 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777777777777777777654444444443 666666666554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=6.7e-09 Score=109.85 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=82.9
Q ss_pred ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCc
Q 041178 415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ 494 (725)
Q Consensus 415 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 494 (725)
+..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444555544332 23333344555555666655543 33344455566666666665432 3333344566667777
Q ss_pred EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCC
Q 041178 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLK 564 (725)
Q Consensus 495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 564 (725)
.+.+.++.++......|.+|.+|+.++|..+ ++..-..+|.+|++|+.+.+..+ ++.+...+|.++..
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 7777666666566667777777777777654 44344566777777877777654 55545566766643
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=8.8e-09 Score=108.92 Aligned_cols=169 Identities=10% Similarity=0.054 Sum_probs=123.3
Q ss_pred ccCCCCCcEEECcCccccccccccccCCCCCCEEeCcCCccccccCccccCCCCCcEEECCCCcccccCCccccccCCCc
Q 041178 415 LRNLTSLERVRFNQNNLSGKVYEAFGYHPNLTFLDLSQNNFYGEISFNWRNFPKLGTFIVSMNNISGSIPLEIGESFKLQ 494 (725)
Q Consensus 415 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 494 (725)
+..+..+..+.+... ........+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++..-..++..+.+|+
T Consensus 190 ~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 334445555554432 22334456677888999888654 44455667888999999998765 5545567788899999
Q ss_pred EEEccCCcccccCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccccCCCCCEEeCCCCc
Q 041178 495 VLDISSNHIVGEIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ 574 (725)
Q Consensus 495 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 574 (725)
.+.+..+ +.......|.+|.+|+.+.+.++.++..-..+|.++.+|+.++|..+ ++.+...+|.+|++|+++.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 9998654 55556678899999999999988887666788999999999999764 66666678999999999999765
Q ss_pred CcccChhhhhccccc
Q 041178 575 FIQKIPIEVEKLIHL 589 (725)
Q Consensus 575 l~~~~p~~~~~l~~L 589 (725)
++..-..+|.++..+
T Consensus 344 v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 344 ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCEECTTTTTTSSCC
T ss_pred cCEEchhHhhCCCCC
Confidence 555555677776443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.7e-09 Score=110.91 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=52.3
Q ss_pred cCCCCCEEeCCCCcCcccChhhhh---cccccccccccccccCcc----CcccccCCCCCCEEeCCCCccccccCccccC
Q 041178 561 NLLKLRYLNLSNNQFIQKIPIEVE---KLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNNLSGFIPRCFEG 633 (725)
Q Consensus 561 ~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 633 (725)
.+++|+.|+|.+|.+.+..+..+. .++.|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356777777777776544433333 467777777777777653 3334456678888888888776443333332
Q ss_pred -CCCCCEEeCcCCC
Q 041178 634 -MHNLSHIDISYNE 646 (725)
Q Consensus 634 -l~~L~~L~ls~N~ 646 (725)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3567887776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=2.6e-09 Score=111.00 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=97.4
Q ss_pred cCchhhhcCCCCCeEeccCceecCCCCccccCccccccccccccccccccccccc--cCCCCCEEeCCC--CcCccc---
Q 041178 506 EIPVQLAKLFSLNKLILSLNQLSGGMPFELGSLTELQYLDLSANKLRSWIPKSIG--NLLKLRYLNLSN--NQFIQK--- 578 (725)
Q Consensus 506 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~--- 578 (725)
.+...+..+++|+.|+|++|.-. .++. + .+++|+.|++..|.+.......+. .+++|++|+|+. |...+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 34556677888999998877311 2232 3 378899999988887654334443 688999999863 221111
Q ss_pred --Chhhh--hcccccccccccccccCccCcccc---cCCCCCCEEeCCCCccccc----cCccccCCCCCCEEeCcCCCc
Q 041178 579 --IPIEV--EKLIHLSKLDLSYNFLGKEMPFQI---CNMKSLEKLNLCHNNLSGF----IPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 579 --~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l 647 (725)
+...+ ..+++|++|+|++|.+....+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|++++|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11122 357899999999999875544333 3578999999999999864 444456679999999999987
Q ss_pred c
Q 041178 648 Q 648 (725)
Q Consensus 648 ~ 648 (725)
+
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 5
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.73 E-value=2.2e-11 Score=119.94 Aligned_cols=22 Identities=23% Similarity=-0.105 Sum_probs=15.1
Q ss_pred CCCccCcceeCCCC-CEEEEEcC
Q 041178 69 NPCAWVGISCNQAE-RIISINLS 90 (725)
Q Consensus 69 ~~C~w~gv~C~~~~-~v~~l~l~ 90 (725)
..|+|.|+.|+..+ +|+.+...
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~ 98 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINS 98 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEE
T ss_pred HHHhcCcEEECCCCCEEEEEEec
Confidence 46899999998643 56554443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=4e-08 Score=96.69 Aligned_cols=105 Identities=30% Similarity=0.287 Sum_probs=71.1
Q ss_pred ccCcccccc--ccccccccc---cccccccccCCCCCEEeCCCCcCcc--cChhhhhcccccccccccccccCccCcccc
Q 041178 535 LGSLTELQY--LDLSANKLR---SWIPKSIGNLLKLRYLNLSNNQFIQ--KIPIEVEKLIHLSKLDLSYNFLGKEMPFQI 607 (725)
Q Consensus 535 ~~~l~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 607 (725)
+...+.|+. ++++.|... +.++....++++|++|+|++|++++ .+|..+..+++|+.|+|++|.+++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444555665 667777432 2222233567888888888888877 4556777888888888888888664 233
Q ss_pred cCCC--CCCEEeCCCCccccccCc-------cccCCCCCCEEe
Q 041178 608 CNMK--SLEKLNLCHNNLSGFIPR-------CFEGMHNLSHID 641 (725)
Q Consensus 608 ~~l~--~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~ 641 (725)
..++ +|++|+|++|.+++.+|. .+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4444 888888888888876652 356677787776
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=3.1e-08 Score=92.75 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=43.0
Q ss_pred cCCCCCEEeCCCCcCccc----ChhhhhcccccccccccccccCcc----CcccccCCCCCCEEeC--CCCccccc----
Q 041178 561 NLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNL--CHNNLSGF---- 626 (725)
Q Consensus 561 ~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~---- 626 (725)
..++|++|+|++|.+... +...+...++|++|+|++|.++.. +...+...++|++|+| ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 334445555555544322 222233334555555555555332 2334445556666666 55666532
Q ss_pred cCccccCCCCCCEEeCcCCCc
Q 041178 627 IPRCFEGMHNLSHIDISYNEL 647 (725)
Q Consensus 627 ~p~~l~~l~~L~~L~ls~N~l 647 (725)
+...+...++|++|++++|.+
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCcCEEeccCCCC
Confidence 233444456666666666665
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=3.2e-08 Score=92.74 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=46.7
Q ss_pred Cccccccccccccccccc----cccccccCCCCCEEeCCCCcCccc----Chhhhhcccccccccc--cccccCcc----
Q 041178 537 SLTELQYLDLSANKLRSW----IPKSIGNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDL--SYNFLGKE---- 602 (725)
Q Consensus 537 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~---- 602 (725)
..++|++|+|++|.+... +.+.+...++|++|+|++|.+... +...+...++|++|+| ++|.++..
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 334455555555544321 122333445566666666665433 3334455556666666 55666443
Q ss_pred CcccccCCCCCCEEeCCCCccc
Q 041178 603 MPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 603 ~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
+...+...++|++|+|++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2334445567777777777764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=4.2e-06 Score=76.10 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=50.8
Q ss_pred cccccccccccccccccccccccCCCCCEEeCCCCc-CcccChhhhhcc----cccccccccccc-cCccCcccccCCCC
Q 041178 539 TELQYLDLSANKLRSWIPKSIGNLLKLRYLNLSNNQ-FIQKIPIEVEKL----IHLSKLDLSYNF-LGKEMPFQICNMKS 612 (725)
Q Consensus 539 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 612 (725)
..|+.||+++|.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776655444556677777777777774 444333334432 357777777764 55443344556677
Q ss_pred CCEEeCCCCc
Q 041178 613 LEKLNLCHNN 622 (725)
Q Consensus 613 L~~L~Ls~N~ 622 (725)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=4.8e-06 Score=75.73 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=52.9
Q ss_pred CCCcEEEccCCcccccCchhhhcCCCCCeEeccCce-ecCCCCccccCc----cccccccccccc-cccccccccccCCC
Q 041178 491 FKLQVLDISSNHIVGEIPVQLAKLFSLNKLILSLNQ-LSGGMPFELGSL----TELQYLDLSANK-LRSWIPKSIGNLLK 564 (725)
Q Consensus 491 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 564 (725)
..|+.||+++|.++..--..+.+|++|+.|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777766555556677777777777774 543322333332 467777777764 55443345566777
Q ss_pred CCEEeCCCCc
Q 041178 565 LRYLNLSNNQ 574 (725)
Q Consensus 565 L~~L~Ls~n~ 574 (725)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=0.0002 Score=66.35 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=44.2
Q ss_pred cccCCCCCEEeCCCCcCccc----ChhhhhcccccccccccccccCcc----CcccccCCCCCCEEeCCCCc---ccc--
Q 041178 559 IGNLLKLRYLNLSNNQFIQK----IPIEVEKLIHLSKLDLSYNFLGKE----MPFQICNMKSLEKLNLCHNN---LSG-- 625 (725)
Q Consensus 559 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~---l~~-- 625 (725)
+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.++.. +-+.+..-+.|++|+|++|. +..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 33344555555555555322 223333445556666666665433 22334444567777776542 221
Q ss_pred --ccCccccCCCCCCEEeCcCCC
Q 041178 626 --FIPRCFEGMHNLSHIDISYNE 646 (725)
Q Consensus 626 --~~p~~l~~l~~L~~L~ls~N~ 646 (725)
.+...+..-++|+.|++++|.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 133445555667777766554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.86 E-value=0.00026 Score=65.59 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=28.3
Q ss_pred cCCCcEEEccCC-ccccc----CchhhhcCCCCCeEeccCceecCC----CCccccCccccccccccccccc
Q 041178 490 SFKLQVLDISSN-HIVGE----IPVQLAKLFSLNKLILSLNQLSGG----MPFELGSLTELQYLDLSANKLR 552 (725)
Q Consensus 490 l~~L~~L~Ls~n-~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 552 (725)
-+.|++|+|++| .+... +...+..-+.|+.|+|++|++... +.+.+..-+.|++|+|++|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 445666666654 44321 222333344555555555555421 1222223344444555544443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.79 E-value=0.0015 Score=56.43 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=43.2
Q ss_pred cccccccccC-ccCcccccCCCCCCEEeCCCCccccccCccccCCCCCCEEeCcCCCcccc
Q 041178 591 KLDLSYNFLG-KEMPFQICNMKSLEKLNLCHNNLSGFIPRCFEGMHNLSHIDISYNELQGP 650 (725)
Q Consensus 591 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 650 (725)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5666666664 25664433 4688899999998877777788888899999999988643
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.96 E-value=0.0063 Score=52.48 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=32.0
Q ss_pred EEeCCCCcCc-ccChhhhhcccccccccccccccCccCcccccCCCCCCEEeCCCCccc
Q 041178 567 YLNLSNNQFI-QKIPIEVEKLIHLSKLDLSYNFLGKEMPFQICNMKSLEKLNLCHNNLS 624 (725)
Q Consensus 567 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 624 (725)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555553 23443221 24566666666665555556666677777777777654
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.76 E-value=0.01 Score=39.17 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhcccccCC
Q 041178 707 ICLIGFKVLFQRRNDSTKQ 725 (725)
Q Consensus 707 ~~~~~~~~~~~~~~~~~k~ 725 (725)
++++.++++++||++++||
T Consensus 26 ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHTTTCCSCC
T ss_pred HHHHHHHHHhhhhHhhccC
Confidence 3334445555555555554
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=95.66 E-value=0.0081 Score=39.52 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhcccccCC
Q 041178 707 ICLIGFKVLFQRRNDSTKQ 725 (725)
Q Consensus 707 ~~~~~~~~~~~~~~~~~k~ 725 (725)
++++.++++++||++++||
T Consensus 25 ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHhhhhhhhhcc
Confidence 3334444555555555554
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=93.32 E-value=0.081 Score=34.74 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=7.4
Q ss_pred HHHHHHHHhhcccccCC
Q 041178 709 LIGFKVLFQRRNDSTKQ 725 (725)
Q Consensus 709 ~~~~~~~~~~~~~~~k~ 725 (725)
.+++.++++||+.++||
T Consensus 28 ~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 28 GVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHCSCCCC
T ss_pred HHHHHhheehhhhhccC
Confidence 33334444444444443
No 168
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=66.62 E-value=4.5 Score=27.80 Aligned_cols=24 Identities=13% Similarity=0.468 Sum_probs=9.5
Q ss_pred ceEEeehHHHHHHHHHHHHHHHHH
Q 041178 691 KWVVVMFSSLVMIILLICLIGFKV 714 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~ 714 (725)
.|+++..+++..+++++++++.|.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333333333333344443
No 169
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=64.08 E-value=7.3 Score=25.65 Aligned_cols=19 Identities=11% Similarity=-0.174 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhcccccC
Q 041178 706 LICLIGFKVLFQRRNDSTK 724 (725)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~k 724 (725)
++++++...++...|++++
T Consensus 22 ~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 22 LLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhhhhHh
Confidence 3344444344444444443
No 170
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=62.19 E-value=10 Score=24.92 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhccc
Q 041178 704 ILLICLIGFKVLFQRRND 721 (725)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~ 721 (725)
++++++++++.++++++|
T Consensus 25 ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHhhhhhhhhc
Confidence 333444444444444333
No 171
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=62.03 E-value=5.5 Score=28.37 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=4.4
Q ss_pred HhhcccccC
Q 041178 716 FQRRNDSTK 724 (725)
Q Consensus 716 ~~~~~~~~k 724 (725)
+|+||++++
T Consensus 34 crhRrrqAe 42 (70)
T 2klu_A 34 SRHRRRQAE 42 (70)
T ss_dssp SSCCSSSCT
T ss_pred HHHHHHHHH
Confidence 444555544
No 172
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=58.40 E-value=9.5 Score=23.06 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 041178 701 VMIILLICLIGFKVLFQRRN 720 (725)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~ 720 (725)
+..++++.++.-.+.+||.|
T Consensus 14 ~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 14 AGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCceeEEEccc
Confidence 33444444455556666644
No 173
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.09 E-value=8.1 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=9.5
Q ss_pred ceEEeehHHHHHHHHHHHHHHHHH
Q 041178 691 KWVVVMFSSLVMIILLICLIGFKV 714 (725)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~ 714 (725)
.|+++..++...+++.+++++.|.
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333333333333334443
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.76 E-value=35 Score=27.05 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=14.1
Q ss_pred cCcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041178 150 EIGHLNQLRSLYFDVNQLHGPIPQEIGQLSLINELAL 186 (725)
Q Consensus 150 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 186 (725)
+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 3444444444444332 22222333444444444443
No 175
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.22 E-value=47 Score=26.27 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=26.7
Q ss_pred CCCCCCccccCCCCCCEEEcCCCcCCCCCCCCcCCCCCCcEEEccC
Q 041178 167 LHGPIPQEIGQLSLINELALCHNNLYGPIPPSLGNLSNLANFYLNN 212 (725)
Q Consensus 167 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 212 (725)
++.+-...|.+|++|+.+.+..+ ++..-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344456667777777777653 3434445666666666666654
No 176
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=51.69 E-value=4.3 Score=25.53 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=3.6
Q ss_pred HHHHHHHhh
Q 041178 710 IGFKVLFQR 718 (725)
Q Consensus 710 ~~~~~~~~~ 718 (725)
++..+.|++
T Consensus 26 IiLi~~w~q 34 (39)
T 2l6w_A 26 IILIMLWQK 34 (39)
Confidence 333344443
No 177
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=40.04 E-value=22 Score=23.31 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccc
Q 041178 701 VMIILLICLIGFKVLFQRRNDS 722 (725)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~ 722 (725)
+++++.+++++|+.+++.++|+
T Consensus 23 l~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHhheehhhhhccC
Confidence 4445556666666666655543
No 178
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=28.61 E-value=75 Score=22.68 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=10.9
Q ss_pred HHHHHHHHHH-HhhcccccCC
Q 041178 706 LICLIGFKVL-FQRRNDSTKQ 725 (725)
Q Consensus 706 ~~~~~~~~~~-~~~~~~~~k~ 725 (725)
+++.+++.++ ..|.+++++|
T Consensus 20 lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 20 LLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHSSCCSSS
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444 6666777765
No 179
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.77 E-value=30 Score=18.12 Aligned_cols=10 Identities=30% Similarity=1.043 Sum_probs=7.4
Q ss_pred CCCCccCcce
Q 041178 68 INPCAWVGIS 77 (725)
Q Consensus 68 ~~~C~w~gv~ 77 (725)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3569999874
Done!