BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041182
MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV
RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTSCDQYLT
EVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED

High Scoring Gene Products

Symbol, full name Information P value
AT2G30230 protein from Arabidopsis thaliana 3.3e-45
AT1G06980 protein from Arabidopsis thaliana 1.2e-42
AT1G29195 protein from Arabidopsis thaliana 3.3e-30
AT1G18290 protein from Arabidopsis thaliana 0.00041
AT5G50090 protein from Arabidopsis thaliana 0.00075

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041182
        (155 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2060859 - symbol:AT2G30230 "AT2G30230" species...   419  3.3e-45   2
TAIR|locus:2007377 - symbol:AT1G06980 "AT1G06980" species...   451  1.2e-42   1
TAIR|locus:505006153 - symbol:AT1G29195 "AT1G29195" speci...   265  3.3e-30   2
TAIR|locus:2014174 - symbol:AT1G18290 "AT1G18290" species...    82  0.00041   2
TAIR|locus:2170116 - symbol:AT5G50090 "AT5G50090" species...    80  0.00075   2


>TAIR|locus:2060859 [details] [associations]
            symbol:AT2G30230 "AT2G30230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC002338 EMBL:AC004165
            InterPro:IPR025322 Pfam:PF14009 EMBL:AY735593 IPI:IPI00535439
            PIR:T00577 RefSeq:NP_180582.1 UniGene:At.50978 PRIDE:O22919
            EnsemblPlants:AT2G30230.1 GeneID:817573 KEGG:ath:AT2G30230
            TAIR:At2g30230 eggNOG:NOG269368 HOGENOM:HOG000237531
            InParanoid:O22919 OMA:ENRHRRK PhylomeDB:O22919
            ProtClustDB:CLSN2683858 Genevestigator:O22919 Uniprot:O22919
        Length = 177

 Score = 419 (152.6 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 79/87 (90%), Positives = 85/87 (97%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
             MGNSLRCCLACVLPCGALDLIRIVHLNG+V+EIT P+TAGEIL+ANPNHVLSKPCSQGVV
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVV 60

Query:    61 RKILILSPESELKRGSIYFLIPASSLP 87
             RKILILSPESELKRGSIYFLIP +S+P
Sbjct:    61 RKILILSPESELKRGSIYFLIPDTSMP 87

 Score = 73 (30.8 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query:   112 VTSCDQYLTEV-LSDKKXXXXXXXXX----XXXXXVVVWRPHLESINED 155
             +T C++YL +V LS+K                   V  WRPHL+SI ED
Sbjct:   127 LTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSASVSTWRPHLDSITED 175


>TAIR|locus:2007377 [details] [associations]
            symbol:AT1G06980 "AT1G06980" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC067971 InterPro:IPR025322
            Pfam:PF14009 HOGENOM:HOG000237531 ProtClustDB:CLSN2683858
            EMBL:AY088543 EMBL:BT024871 EMBL:AK117118 IPI:IPI00518476
            PIR:E86204 RefSeq:NP_563773.1 UniGene:At.42319
            EnsemblPlants:AT1G06980.1 GeneID:837208 KEGG:ath:AT1G06980
            TAIR:At1g06980 eggNOG:NOG269026 InParanoid:Q9LMJ2 OMA:SGHIEEY
            PhylomeDB:Q9LMJ2 Genevestigator:Q9LMJ2 Uniprot:Q9LMJ2
        Length = 169

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 101/167 (60%), Positives = 108/167 (64%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
             MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITR ITAGEIL+ANPNHVLSKPCSQGVV
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVV 60

Query:    61 RKILILSPESELKRGSIYFLIPASSLPGEXXXXXXXXXX-------XXXXXXXXXXXD-- 111
             RKILILSPESELKRGSIYFLIP SSLP +                            D  
Sbjct:    61 RKILILSPESELKRGSIYFLIPDSSLPEKKRRRKDTPRRKKNLQNPSADAAGREIKGDEE 120

Query:   112 -VTSCDQYLTEVLSDKKXXXXXXXXX--XXXXXVVVWRPHLESINED 155
              V  C++YL EV+S                   V  WRP L+SI+ED
Sbjct:   121 CVKLCEKYLEEVVSSASTGKEHRHRRRHSRSASVSTWRPLLDSISED 167


>TAIR|locus:505006153 [details] [associations]
            symbol:AT1G29195 "AT1G29195" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=IDA] EMBL:CP002684 GO:GO:0009507 EMBL:AC021043
            InterPro:IPR025322 Pfam:PF14009 HOGENOM:HOG000237531 EMBL:AY052248
            EMBL:AY060513 EMBL:AY087880 IPI:IPI00533956 PIR:D86414
            RefSeq:NP_564323.1 UniGene:At.15805 IntAct:Q9LP48 PRIDE:Q9LP48
            EnsemblPlants:AT1G29195.1 GeneID:839794 KEGG:ath:AT1G29195
            TAIR:At1g29195 InParanoid:Q9LP48 OMA:KETIRCC PhylomeDB:Q9LP48
            ProtClustDB:CLSN2715567 Genevestigator:Q9LP48 Uniprot:Q9LP48
        Length = 193

 Score = 265 (98.3 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCS---- 56
             M  ++RCC+AC+LPCGALD+IRIVH NG+VEEI+  ITA EI++A+P HVL KP S    
Sbjct:     1 MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query:    57 ---QGVVR--KILILSPESELKRGSIYFLIPAS 84
                + V+   KI+I+ PE+EL+RG IYFL+PA+
Sbjct:    61 HDERDVISATKIVIVPPEAELQRGKIYFLMPAT 93

 Score = 84 (34.6 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query:   114 SCDQYLTEVLSDKKXXXXXXXXXXXXXXVVVWRPHLESINE 154
             S D+YLTE+LS+K               V VWRPHLESI+E
Sbjct:   152 SSDRYLTEILSEK----VATQKDRRKGRVGVWRPHLESISE 188


>TAIR|locus:2014174 [details] [associations]
            symbol:AT1G18290 "AT1G18290" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002684 GenomeReviews:CT485782_GR
            EMBL:AC013354 EMBL:AC069551 InterPro:IPR025322 Pfam:PF14009
            HOGENOM:HOG000237446 EMBL:AY735515 EMBL:AY773813 IPI:IPI00539085
            PIR:E86317 RefSeq:NP_173265.1 UniGene:At.50933 PaxDb:Q9LE02
            PRIDE:Q9LE02 EnsemblPlants:AT1G18290.1 GeneID:838409
            KEGG:ath:AT1G18290 TAIR:At1g18290 eggNOG:NOG253858
            InParanoid:Q9LE02 OMA:NTSSCAP PhylomeDB:Q9LE02
            ProtClustDB:CLSN2682172 ArrayExpress:Q9LE02 Genevestigator:Q9LE02
            Uniprot:Q9LE02
        Length = 176

 Score = 82 (33.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 19/88 (21%), Positives = 42/88 (47%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVH-LNGYVEEITRPITAGEILEANPNHVLSKPCSQGV 59
             MGN+  C    +    +  +++I+    G +E  ++PI   +I+  +  H ++      +
Sbjct:     1 MGNTSSCAPLIISTNSSSGVVKILAPFTGTLEVFSKPIKTSDIVSRHSGHFITDSTLLQI 60

Query:    60 VRKILILSPESELK-RGSIYFLIPASSL 86
               ++  +SP+  L+ R  +Y L+P   L
Sbjct:    61 SHRVTAVSPDEYLRPRRHLYLLLPTDML 88

 Score = 38 (18.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query:   145 WRPHLESINE 154
             WRP LE+I E
Sbjct:   166 WRPKLETIVE 175


>TAIR|locus:2170116 [details] [associations]
            symbol:AT5G50090 "AT5G50090" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AB026650 InterPro:IPR025322 Pfam:PF14009 EMBL:BT004765
            EMBL:AK227893 IPI:IPI00539015 RefSeq:NP_199820.1 UniGene:At.29750
            EnsemblPlants:AT5G50090.1 GeneID:835073 KEGG:ath:AT5G50090
            TAIR:At5g50090 eggNOG:NOG239341 HOGENOM:HOG000242807
            InParanoid:Q9FGA2 OMA:PNGKEEK PhylomeDB:Q9FGA2
            ProtClustDB:CLSN2687010 Genevestigator:Q9FGA2 Uniprot:Q9FGA2
        Length = 159

 Score = 80 (33.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query:    15 CGALDLIRIV--HLNGYVEEITRPITAGEILEANPNHVLSKPCSQ-----------GVVR 61
             C A+D  R+V  H NG  E+++ P++A  +++ NP H +S   S            G +R
Sbjct:     4 CQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGGPLR 63

Query:    62 --KILILSPESELKRGSIYFLI 81
               +I +L P   L  G +Y LI
Sbjct:    64 LTRIKLLRPTDTLVLGHVYRLI 85

 Score = 38 (18.4 bits), Expect = 0.00075, Sum P(2) = 0.00075
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query:   145 WRPHLESINE 154
             W+P L+SI+E
Sbjct:   146 WQPSLQSISE 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       120   0.00091  102 3  11 22  0.36    31
                                                     29  0.48    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  552 (59 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.96u 0.13s 10.09t   Elapsed:  00:00:01
  Total cpu time:  9.96u 0.13s 10.09t   Elapsed:  00:00:01
  Start:  Tue May 21 04:17:56 2013   End:  Tue May 21 04:17:57 2013

Back to top