Query 041182
Match_columns 155
No_of_seqs 144 out of 403
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14009 DUF4228: Domain of un 100.0 9.1E-38 2E-42 239.3 12.3 151 1-154 1-181 (181)
2 PF02824 TGS: TGS domain; Int 71.5 6.6 0.00014 25.9 3.5 25 21-45 1-25 (60)
3 cd00565 ThiS ThiaminS ubiquiti 57.3 24 0.00051 23.2 4.1 52 24-82 2-60 (65)
4 cd03063 TRX_Fd_FDH_beta TRX-li 45.7 25 0.00054 25.5 2.9 30 11-42 41-70 (92)
5 PRK05659 sulfur carrier protei 45.0 24 0.00053 23.0 2.6 22 24-45 3-24 (66)
6 PRK07440 hypothetical protein; 38.4 1.1E+02 0.0024 20.6 5.2 24 22-45 5-28 (70)
7 PF00197 Kunitz_legume: Trypsi 38.3 27 0.0006 27.7 2.4 20 69-88 7-26 (176)
8 TIGR03746 conj_TIGR03746 integ 38.2 23 0.0005 29.6 2.0 30 23-52 147-176 (202)
9 cd00178 STI Soybean trypsin in 37.4 25 0.00055 27.9 2.1 18 69-86 7-24 (172)
10 cd01668 TGS_RelA_SpoT TGS_RelA 37.0 53 0.0012 20.2 3.2 23 23-45 3-25 (60)
11 PRK08364 sulfur carrier protei 35.3 1.1E+02 0.0024 20.4 4.7 53 24-83 7-66 (70)
12 PF10813 DUF2733: Protein of u 35.3 15 0.00032 22.3 0.3 10 1-10 1-10 (32)
13 KOG4224 Armadillo repeat prote 35.0 15 0.00033 34.1 0.5 11 1-11 1-11 (550)
14 PRK06944 sulfur carrier protei 32.5 47 0.001 21.4 2.5 23 24-46 3-25 (65)
15 TIGR01683 thiS thiamine biosyn 32.4 41 0.00088 22.0 2.1 23 24-46 1-23 (64)
16 PRK08053 sulfur carrier protei 31.0 55 0.0012 21.6 2.6 22 24-45 3-24 (66)
17 PF11211 DUF2997: Protein of u 29.6 37 0.0008 21.9 1.5 13 23-35 4-16 (48)
18 PRK06437 hypothetical protein; 29.3 1.8E+02 0.0039 19.4 5.5 52 24-82 5-62 (67)
19 PRK05863 sulfur carrier protei 28.5 65 0.0014 21.3 2.6 23 24-46 3-25 (65)
20 smart00452 STI Soybean trypsin 27.6 43 0.00093 26.7 1.9 17 69-85 6-22 (172)
21 PF05862 IceA2: Helicobacter p 27.0 52 0.0011 22.5 1.9 17 19-35 36-52 (59)
22 PF08140 Cuticle_1: Crustacean 25.4 39 0.00085 21.4 1.0 27 23-51 5-31 (40)
23 PRK06083 sulfur carrier protei 25.1 76 0.0016 22.5 2.6 24 23-46 20-43 (84)
24 cd01667 TGS_ThrRS_N TGS _ThrRS 22.4 1.6E+02 0.0034 17.4 3.4 25 22-46 2-26 (61)
25 smart00720 calpain_III calpain 20.8 74 0.0016 23.6 2.0 20 68-88 106-125 (143)
26 cd01616 TGS The TGS domain, na 20.7 1.7E+02 0.0036 17.0 3.3 25 22-46 2-26 (60)
27 PRK07696 sulfur carrier protei 20.2 1.1E+02 0.0025 20.4 2.6 22 24-45 3-25 (67)
No 1
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=100.00 E-value=9.1e-38 Score=239.27 Aligned_cols=151 Identities=37% Similarity=0.618 Sum_probs=112.5
Q ss_pred CCCcccccccccCCCCCCceeEEEccCCcEEEecCCCCHHHHhhhCCCeEEECCCCCCCccccccCCCCCccCCCCeEEE
Q 041182 1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFL 80 (155)
Q Consensus 1 MGN~lscc~~c~~~c~a~~~~kVV~~dG~Vee~~~PV~AaeVm~~~P~H~V~~s~sl~~~~ri~~L~pDeeL~~G~iYfL 80 (155)
|||+++||.+ +++..++|||||+||+|++|+.||+|+|||.+||+||||+++.+.++.++.+|+||++|++|++|||
T Consensus 1 MGn~~~~~~~---~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~~~~~~~~~~l~~d~~L~~G~~Y~l 77 (181)
T PF14009_consen 1 MGNCVSCCLA---SSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDSFRFGRRIKPLPPDEELQPGQIYFL 77 (181)
T ss_pred CCCccccccc---ccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEeccccccCCCcccCCCccCeecCCCEEEE
Confidence 9999999886 4566889999999999999999999999999999999999998889999999999999999999999
Q ss_pred eeCCCCCcccccccCC------CCC-cc--ccc-c-------ccccC-----CcccchhhHHHHhhhcccC--------c
Q 041182 81 IPASSLPGEKKKCGNN------NKN-KA--FKK-S-------KKCYK-----DVTSCDQYLTEVLSDKKSS--------S 130 (155)
Q Consensus 81 LP~~~l~~~~~~~~~~------~~~-~~--~~~-~-------~~~~~-----~~~~~~~~~~~~~~~~~~~--------~ 130 (155)
||.+.++.......-. +.. .. ... . ..... .+....+.+.+++++.... .
T Consensus 78 lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rvki~isk~el~~~l~~~s~~~~~~~~~~~ 157 (181)
T PF14009_consen 78 LPMSRLQSVLSASDMASLASSASSASSSSSARKSSSRPFSRSRSSNGGVVRVKIVISKEELEELLSEGSDEEMLSESCRR 157 (181)
T ss_pred EEccccCcccccchhcccccchhhccccccccccccccccccccccCcccccccccCHHHHHHHHhccccchhhhhhhcc
Confidence 9999988753322111 000 00 000 0 01111 1234567788888644211 0
Q ss_pred cccccccCCCCceecccccccccC
Q 041182 131 SRRRHHRSSSRVVVWRPHLESINE 154 (155)
Q Consensus 131 ~~~~r~~~~~~~~~w~p~l~~i~e 154 (155)
...+.+++.++...|||.||+|.|
T Consensus 158 ~~~~~~~~~~~~~~WrP~LesI~E 181 (181)
T PF14009_consen 158 PRRRSSRRGSRSRSWRPALESIPE 181 (181)
T ss_pred ccccccccCCCCCCccCCCCCcCc
Confidence 122345667888899999999998
No 2
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=71.53 E-value=6.6 Score=25.87 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.4
Q ss_pred eEEEccCCcEEEecCCCCHHHHhhh
Q 041182 21 IRIVHLNGYVEEITRPITAGEILEA 45 (155)
Q Consensus 21 ~kVV~~dG~Vee~~~PV~AaeVm~~ 45 (155)
|+|..|||++.+|....|+.|+-..
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~ 25 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYS 25 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHH
Confidence 5788899999999999999999765
No 3
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=57.32 E-value=24 Score=23.19 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=33.0
Q ss_pred EccCCcEEEecCCCCHHHHhhhC---CCeEEECCCCCCCccccccCCCC----CccCCCCeEEEee
Q 041182 24 VHLNGYVEEITRPITAGEILEAN---PNHVLSKPCSQGVVRKILILSPE----SELKRGSIYFLIP 82 (155)
Q Consensus 24 V~~dG~Vee~~~PV~AaeVm~~~---P~H~V~~s~sl~~~~ri~~L~pD----eeL~~G~iYfLLP 82 (155)
|..||...++..+.++.+|+... +..+.. ...-.+++.+ ..|+.|--.-++|
T Consensus 2 i~iNg~~~~~~~~~tv~~ll~~l~~~~~~i~V-------~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 2 ITVNGEPREVEEGATLAELLEELGLDPRGVAV-------ALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEECCeEEEcCCCCCHHHHHHHcCCCCCcEEE-------EECCEEcCHHHcCceecCCCCEEEEEE
Confidence 56799999999999999999764 222221 1111244445 6777775444554
No 4
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=45.68 E-value=25 Score=25.54 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=21.9
Q ss_pred ccCCCCCCceeEEEccCCcEEEecCCCCHHHH
Q 041182 11 CVLPCGALDLIRIVHLNGYVEEITRPITAGEI 42 (155)
Q Consensus 11 c~~~c~a~~~~kVV~~dG~Vee~~~PV~AaeV 42 (155)
|...|..-..+.|.+++|+ -||..|+..++
T Consensus 41 C~G~C~~ePlV~V~~p~g~--v~Y~~V~~edv 70 (92)
T cd03063 41 SRGMYWLEPLVEVETPGGR--VAYGPVTPADV 70 (92)
T ss_pred CceecCCCCEEEEEeCCCc--EEEEeCCHHHH
Confidence 5566776666777789987 58888886654
No 5
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=45.04 E-value=24 Score=22.98 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred EccCCcEEEecCCCCHHHHhhh
Q 041182 24 VHLNGYVEEITRPITAGEILEA 45 (155)
Q Consensus 24 V~~dG~Vee~~~PV~AaeVm~~ 45 (155)
|..||+..++..+.|+++++..
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~ 24 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAR 24 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHh
Confidence 6789999999999999999986
No 6
>PRK07440 hypothetical protein; Provisional
Probab=38.42 E-value=1.1e+02 Score=20.64 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=21.1
Q ss_pred EEEccCCcEEEecCCCCHHHHhhh
Q 041182 22 RIVHLNGYVEEITRPITAGEILEA 45 (155)
Q Consensus 22 kVV~~dG~Vee~~~PV~AaeVm~~ 45 (155)
-.|..||+..++..++++.++|.+
T Consensus 5 m~i~vNG~~~~~~~~~tl~~lL~~ 28 (70)
T PRK07440 5 ITLQVNGETRTCSSGTSLPDLLQQ 28 (70)
T ss_pred eEEEECCEEEEcCCCCCHHHHHHH
Confidence 356789999999999999999976
No 7
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=38.33 E-value=27 Score=27.70 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=16.2
Q ss_pred CCccCCCCeEEEeeCCCCCc
Q 041182 69 ESELKRGSIYFLIPASSLPG 88 (155)
Q Consensus 69 DeeL~~G~iYfLLP~~~l~~ 88 (155)
+++|+.|.-||++|+..-..
T Consensus 7 G~~l~~g~~YyI~p~~~~~G 26 (176)
T PF00197_consen 7 GNPLRNGGEYYILPAIRGAG 26 (176)
T ss_dssp SCB-BTTSEEEEEESSTGCS
T ss_pred CCCCcCCCCEEEEeCccCCC
Confidence 68899999999999877553
No 8
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=38.20 E-value=23 Score=29.63 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=28.1
Q ss_pred EEccCCcEEEecCCCCHHHHhhhCCCeEEE
Q 041182 23 IVHLNGYVEEITRPITAGEILEANPNHVLS 52 (155)
Q Consensus 23 VV~~dG~Vee~~~PV~AaeVm~~~P~H~V~ 52 (155)
+|+.|..+.|+..+..+.+++-.||=++|-
T Consensus 147 ~V~LDl~~~E~~~~e~VK~~~vRYpL~VVR 176 (202)
T TIGR03746 147 TVNLDLSVDEYYGGEPVKRALVRYPLRVVR 176 (202)
T ss_pred EEEEEEEEEeeeCCcchhhhhcccceEEEE
Confidence 788899999999999999999999999984
No 9
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=37.41 E-value=25 Score=27.95 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=16.0
Q ss_pred CCccCCCCeEEEeeCCCC
Q 041182 69 ESELKRGSIYFLIPASSL 86 (155)
Q Consensus 69 DeeL~~G~iYfLLP~~~l 86 (155)
+++|+.|.-||++|+..-
T Consensus 7 G~~l~~g~~YyI~p~~~g 24 (172)
T cd00178 7 GNPLRNGGRYYILPAIRG 24 (172)
T ss_pred CCCCcCCCeEEEEEceeC
Confidence 789999999999999753
No 10
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=36.99 E-value=53 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.2
Q ss_pred EEccCCcEEEecCCCCHHHHhhh
Q 041182 23 IVHLNGYVEEITRPITAGEILEA 45 (155)
Q Consensus 23 VV~~dG~Vee~~~PV~AaeVm~~ 45 (155)
|..+||...+|..++++++++..
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~ 25 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYA 25 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHH
Confidence 56789999999999999998864
No 11
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=35.32 E-value=1.1e+02 Score=20.44 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=32.8
Q ss_pred EccCCc----EEEecCCCCHHHHhhhC---CCeEEECCCCCCCccccccCCCCCccCCCCeEEEeeC
Q 041182 24 VHLNGY----VEEITRPITAGEILEAN---PNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIPA 83 (155)
Q Consensus 24 V~~dG~----Vee~~~PV~AaeVm~~~---P~H~V~~s~sl~~~~ri~~L~pDeeL~~G~iYfLLP~ 83 (155)
|..||+ ..++....+++|++.+. +..++ +...-.++++|..|+.|--.-++|.
T Consensus 7 v~vng~~~~~~~~~~~~~tv~~ll~~l~~~~~~v~-------v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 7 VKVIGRGIEKEIEWRKGMKVADILRAVGFNTESAI-------AKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEeccccceEEEcCCCCcHHHHHHHcCCCCccEE-------EEECCEECCCCcCcCCCCEEEEEcc
Confidence 345777 55667889999999853 22211 1112234577888888876666664
No 12
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=35.26 E-value=15 Score=22.27 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=8.6
Q ss_pred CCCccccccc
Q 041182 1 MGNSLRCCLA 10 (155)
Q Consensus 1 MGN~lscc~~ 10 (155)
||+.+|||-.
T Consensus 1 MG~~~s~Ckr 10 (32)
T PF10813_consen 1 MGSLLSMCKR 10 (32)
T ss_pred Ccceeeeeec
Confidence 9999998865
No 13
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.03 E-value=15 Score=34.06 Aligned_cols=11 Identities=55% Similarity=1.210 Sum_probs=9.3
Q ss_pred CCCcccccccc
Q 041182 1 MGNSLRCCLAC 11 (155)
Q Consensus 1 MGN~lscc~~c 11 (155)
||||++||-..
T Consensus 1 MG~c~sc~~~S 11 (550)
T KOG4224|consen 1 MGNCLSCCESS 11 (550)
T ss_pred CCccccccccc
Confidence 99999998653
No 14
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=32.48 E-value=47 Score=21.43 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.1
Q ss_pred EccCCcEEEecCCCCHHHHhhhC
Q 041182 24 VHLNGYVEEITRPITAGEILEAN 46 (155)
Q Consensus 24 V~~dG~Vee~~~PV~AaeVm~~~ 46 (155)
|..||...++....++++++...
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l 25 (65)
T PRK06944 3 IQLNQQTLSLPDGATVADALAAY 25 (65)
T ss_pred EEECCEEEECCCCCcHHHHHHhh
Confidence 57899999999999999999753
No 15
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=32.41 E-value=41 Score=22.02 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred EccCCcEEEecCCCCHHHHhhhC
Q 041182 24 VHLNGYVEEITRPITAGEILEAN 46 (155)
Q Consensus 24 V~~dG~Vee~~~PV~AaeVm~~~ 46 (155)
|..||+..++..++++.|++...
T Consensus 1 i~iNg~~~~~~~~~tv~~ll~~l 23 (64)
T TIGR01683 1 ITVNGEPVEVEDGLTLAALLESL 23 (64)
T ss_pred CEECCeEEEcCCCCcHHHHHHHc
Confidence 35799999999999999999864
No 16
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=30.97 E-value=55 Score=21.63 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.9
Q ss_pred EccCCcEEEecCCCCHHHHhhh
Q 041182 24 VHLNGYVEEITRPITAGEILEA 45 (155)
Q Consensus 24 V~~dG~Vee~~~PV~AaeVm~~ 45 (155)
|..||+..++..++++++++..
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~ 24 (66)
T PRK08053 3 ILFNDQPMQCAAGQTVHELLEQ 24 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHH
Confidence 5679999999999999999975
No 17
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=29.59 E-value=37 Score=21.93 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=10.1
Q ss_pred EEccCCcEEEecC
Q 041182 23 IVHLNGYVEEITR 35 (155)
Q Consensus 23 VV~~dG~Vee~~~ 35 (155)
+|++||+|++=..
T Consensus 4 ~I~~dG~V~~~v~ 16 (48)
T PF11211_consen 4 TIYPDGRVEEEVE 16 (48)
T ss_pred EECCCcEEEEEEE
Confidence 5699999988643
No 18
>PRK06437 hypothetical protein; Provisional
Probab=29.29 E-value=1.8e+02 Score=19.43 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=32.1
Q ss_pred EccCC---cEEEecCCCCHHHHhhhC---CCeEEECCCCCCCccccccCCCCCccCCCCeEEEee
Q 041182 24 VHLNG---YVEEITRPITAGEILEAN---PNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIP 82 (155)
Q Consensus 24 V~~dG---~Vee~~~PV~AaeVm~~~---P~H~V~~s~sl~~~~ri~~L~pDeeL~~G~iYfLLP 82 (155)
+..|| +..++..+.+++||+.+. |..++. ...-.++++|..|+.|--.-++|
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV-------~vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVV-------IVNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHHcCCCCccEEE-------EECCEECCCceEcCCCCEEEEEe
Confidence 44567 457777889999999853 332221 12223556888888875555554
No 19
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=28.51 E-value=65 Score=21.28 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.4
Q ss_pred EccCCcEEEecCCCCHHHHhhhC
Q 041182 24 VHLNGYVEEITRPITAGEILEAN 46 (155)
Q Consensus 24 V~~dG~Vee~~~PV~AaeVm~~~ 46 (155)
|..||...++..+.++.+++.+.
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l 25 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSL 25 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHc
Confidence 56899999999999999999863
No 20
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=27.60 E-value=43 Score=26.66 Aligned_cols=17 Identities=29% Similarity=0.774 Sum_probs=15.5
Q ss_pred CCccCCCCeEEEeeCCC
Q 041182 69 ESELKRGSIYFLIPASS 85 (155)
Q Consensus 69 DeeL~~G~iYfLLP~~~ 85 (155)
+++|+.|.-||++|+..
T Consensus 6 G~~l~~G~~YyI~p~~~ 22 (172)
T smart00452 6 GNPLRNGGTYYILPAIR 22 (172)
T ss_pred CCCCcCCCcEEEEEccc
Confidence 68999999999999974
No 21
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=26.99 E-value=52 Score=22.47 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.1
Q ss_pred ceeEEEccCCcEEEecC
Q 041182 19 DLIRIVHLNGYVEEITR 35 (155)
Q Consensus 19 ~~~kVV~~dG~Vee~~~ 35 (155)
..+.++..+|+|+||..
T Consensus 36 ~~VA~~ta~GkveeY~n 52 (59)
T PF05862_consen 36 GIVAAVTANGKVEEYKN 52 (59)
T ss_pred CEEEEEecCCceeeeec
Confidence 35778999999999964
No 22
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=25.41 E-value=39 Score=21.39 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=20.9
Q ss_pred EEccCCcEEEecCCCCHHHHhhhCCCeEE
Q 041182 23 IVHLNGYVEEITRPITAGEILEANPNHVL 51 (155)
Q Consensus 23 VV~~dG~Vee~~~PV~AaeVm~~~P~H~V 51 (155)
||.+||....|...+. +|+..-|.=+|
T Consensus 5 ii~~dG~~~q~~~~~a--~ivl~GpSG~v 31 (40)
T PF08140_consen 5 IITPDGTNVQFPHGVA--NIVLIGPSGAV 31 (40)
T ss_pred eECCCCCEEECCcccc--eEEEECCceEE
Confidence 7999999999998885 66666665444
No 23
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=25.11 E-value=76 Score=22.55 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.4
Q ss_pred EEccCCcEEEecCCCCHHHHhhhC
Q 041182 23 IVHLNGYVEEITRPITAGEILEAN 46 (155)
Q Consensus 23 VV~~dG~Vee~~~PV~AaeVm~~~ 46 (155)
-|+.||...++..++++++++...
T Consensus 20 ~I~VNG~~~~~~~~~tl~~LL~~l 43 (84)
T PRK06083 20 TISINDQSIQVDISSSLAQIIAQL 43 (84)
T ss_pred EEEECCeEEEcCCCCcHHHHHHHc
Confidence 478999999999999999999753
No 24
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=22.37 E-value=1.6e+02 Score=17.38 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEccCCcEEEecCCCCHHHHhhhC
Q 041182 22 RIVHLNGYVEEITRPITAGEILEAN 46 (155)
Q Consensus 22 kVV~~dG~Vee~~~PV~AaeVm~~~ 46 (155)
+|..+||...++..+++..++..+.
T Consensus 2 ~i~~~~~~~~~~~~~~t~~~~~~~~ 26 (61)
T cd01667 2 KITLPDGSVKEFPKGTTPLDIAKSI 26 (61)
T ss_pred EEEcCCCCEEEeCCCCCHHHHHHHH
Confidence 4667789989999999999988764
No 25
>smart00720 calpain_III calpain_III.
Probab=20.81 E-value=74 Score=23.65 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.0
Q ss_pred CCCccCCCCeEEEeeCCCCCc
Q 041182 68 PESELKRGSIYFLIPASSLPG 88 (155)
Q Consensus 68 pDeeL~~G~iYfLLP~~~l~~ 88 (155)
....|.+|. |.|||..-.+.
T Consensus 106 ~~~~L~~G~-Y~iVPsT~~p~ 125 (143)
T smart00720 106 ERFRLPPGE-YVIVPSTFEPN 125 (143)
T ss_pred EEEEcCCCC-EEEEEeecCCC
Confidence 356799999 99999977664
No 26
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.73 E-value=1.7e+02 Score=17.04 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=20.8
Q ss_pred EEEccCCcEEEecCCCCHHHHhhhC
Q 041182 22 RIVHLNGYVEEITRPITAGEILEAN 46 (155)
Q Consensus 22 kVV~~dG~Vee~~~PV~AaeVm~~~ 46 (155)
.++..||...++....++.++..+.
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~ 26 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKI 26 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHH
Confidence 4677889999999999999988654
No 27
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=20.25 E-value=1.1e+02 Score=20.35 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.9
Q ss_pred EccCCcEEEecCC-CCHHHHhhh
Q 041182 24 VHLNGYVEEITRP-ITAGEILEA 45 (155)
Q Consensus 24 V~~dG~Vee~~~P-V~AaeVm~~ 45 (155)
|..||+..++..+ .+++|++..
T Consensus 3 I~vNG~~~~~~~~~~tv~~lL~~ 25 (67)
T PRK07696 3 LKINGNQIEVPESVKTVAELLTH 25 (67)
T ss_pred EEECCEEEEcCCCcccHHHHHHH
Confidence 5679999999987 689999975
Done!