Query 041183
Match_columns 760
No_of_seqs 596 out of 3897
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 04:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-101 8E-106 873.2 82.8 710 43-756 48-766 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 6E-82 1.3E-86 716.1 66.4 608 2-616 108-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.6E-74 3.6E-79 639.4 61.9 515 242-756 85-603 (697)
4 PLN03218 maturation of RBCL 1; 100.0 6.5E-65 1.4E-69 562.6 55.8 530 43-648 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1E-62 2.2E-67 545.2 57.7 507 142-717 368-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.2E-63 9E-68 548.5 53.3 470 44-613 85-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-36 2.3E-41 356.5 72.4 706 15-758 125-888 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.2E-36 1.8E-40 349.1 71.8 681 16-710 91-799 (899)
9 PRK11447 cellulose synthase su 100.0 7.5E-25 1.6E-29 255.4 65.5 629 18-712 31-743 (1157)
10 PRK11447 cellulose synthase su 100.0 5E-24 1.1E-28 248.5 59.8 610 52-758 34-728 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.8E-22 6.2E-27 222.3 62.7 622 25-710 54-706 (987)
12 PRK09782 bacteriophage N4 rece 99.9 7E-21 1.5E-25 211.3 57.0 631 14-711 77-741 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.2E-19 2.7E-24 177.7 35.8 380 309-699 114-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 1.1E-17 2.4E-22 173.3 47.3 660 15-713 41-801 (1018)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-18 6.9E-23 187.7 41.2 390 313-710 129-571 (615)
16 KOG4626 O-linked N-acetylgluco 99.9 2.7E-19 5.8E-24 175.4 27.9 419 279-710 51-485 (966)
17 PRK11788 tetratricopeptide rep 99.8 4.9E-19 1.1E-23 184.6 28.8 295 423-724 46-361 (389)
18 KOG2002 TPR-containing nuclear 99.8 1.4E-15 3E-20 158.0 47.9 638 30-712 26-747 (1018)
19 KOG4318 Bicoid mRNA stability 99.8 8.6E-17 1.9E-21 164.6 38.1 673 2-753 12-860 (1088)
20 PRK15174 Vi polysaccharide exp 99.8 7.8E-17 1.7E-21 175.8 40.4 351 322-681 16-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 4.4E-16 9.5E-21 173.9 44.1 397 280-710 19-456 (765)
22 PRK11788 tetratricopeptide rep 99.8 4.8E-17 1E-21 169.6 32.9 292 349-675 42-346 (389)
23 PRK10049 pgaA outer membrane p 99.8 3.8E-16 8.3E-21 174.3 41.9 360 315-711 19-423 (765)
24 PRK15174 Vi polysaccharide exp 99.8 2.6E-16 5.5E-21 171.8 39.5 327 378-712 43-383 (656)
25 TIGR00990 3a0801s09 mitochondr 99.8 7.5E-16 1.6E-20 169.0 38.8 378 344-758 129-559 (615)
26 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.5E-19 135.4 38.4 438 145-641 117-587 (625)
27 KOG4422 Uncharacterized conser 99.8 3.3E-15 7.1E-20 140.7 31.8 295 2-324 137-481 (625)
28 KOG2076 RNA polymerase III tra 99.8 2.1E-13 4.6E-18 141.1 47.2 629 28-706 152-891 (895)
29 PRK14574 hmsH outer membrane p 99.8 5.7E-14 1.2E-18 153.5 45.1 442 153-684 43-521 (822)
30 PRK14574 hmsH outer membrane p 99.8 3.3E-14 7.1E-19 155.3 43.2 420 286-710 44-513 (822)
31 KOG4318 Bicoid mRNA stability 99.7 2.8E-13 6.1E-18 139.3 43.0 624 66-759 10-725 (1088)
32 KOG2076 RNA polymerase III tra 99.7 5.1E-13 1.1E-17 138.4 43.4 574 123-755 149-834 (895)
33 KOG0495 HAT repeat protein [RN 99.7 6.9E-12 1.5E-16 124.9 46.1 446 210-724 437-892 (913)
34 KOG2003 TPR repeat-containing 99.7 2E-13 4.3E-18 129.6 31.8 271 421-697 428-710 (840)
35 KOG0495 HAT repeat protein [RN 99.7 1.2E-11 2.6E-16 123.2 43.3 423 288-721 388-857 (913)
36 KOG2003 TPR repeat-containing 99.6 1.3E-13 2.7E-18 131.0 25.9 423 284-712 209-691 (840)
37 PF13429 TPR_15: Tetratricopep 99.6 2E-15 4.4E-20 148.4 10.4 255 450-709 15-276 (280)
38 KOG0547 Translocase of outer m 99.6 4.3E-12 9.2E-17 122.3 30.5 214 489-708 337-564 (606)
39 KOG1126 DNA-binding cell divis 99.6 3.3E-13 7.1E-18 135.5 22.7 274 427-709 334-619 (638)
40 PRK10747 putative protoheme IX 99.6 2.6E-12 5.5E-17 132.3 28.7 274 425-708 97-388 (398)
41 TIGR00540 hemY_coli hemY prote 99.6 2.3E-12 5E-17 133.5 27.8 116 424-540 96-214 (409)
42 KOG1155 Anaphase-promoting com 99.6 2.5E-11 5.5E-16 116.3 31.7 358 306-707 159-533 (559)
43 PRK10747 putative protoheme IX 99.5 7.6E-12 1.6E-16 128.8 29.3 279 390-677 97-391 (398)
44 KOG1155 Anaphase-promoting com 99.5 1.5E-10 3.3E-15 111.1 34.4 286 450-758 234-524 (559)
45 PF13429 TPR_15: Tetratricopep 99.5 6E-14 1.3E-18 138.0 10.6 248 483-759 13-266 (280)
46 KOG1126 DNA-binding cell divis 99.5 3.6E-12 7.8E-17 128.1 22.0 279 392-681 334-625 (638)
47 TIGR00540 hemY_coli hemY prote 99.5 6.4E-11 1.4E-15 122.7 31.4 280 388-707 95-396 (409)
48 KOG1915 Cell cycle control pro 99.5 6E-09 1.3E-13 100.5 40.3 410 291-708 156-623 (677)
49 KOG1173 Anaphase-promoting com 99.5 5.5E-10 1.2E-14 110.2 34.2 253 451-709 252-517 (611)
50 COG2956 Predicted N-acetylgluc 99.5 1.4E-10 3.1E-15 106.1 27.5 249 449-732 113-369 (389)
51 KOG0985 Vesicle coat protein c 99.5 3.5E-07 7.6E-12 96.5 54.7 668 5-706 349-1245(1666)
52 KOG4162 Predicted calmodulin-b 99.4 2.9E-08 6.3E-13 102.0 42.4 400 304-709 316-782 (799)
53 KOG0547 Translocase of outer m 99.4 1E-09 2.2E-14 106.3 29.9 206 523-759 336-555 (606)
54 KOG2047 mRNA splicing factor [ 99.4 1.9E-07 4.1E-12 93.9 45.6 524 113-703 102-716 (835)
55 COG2956 Predicted N-acetylgluc 99.4 1.3E-09 2.8E-14 100.1 28.0 281 354-641 47-344 (389)
56 COG3071 HemY Uncharacterized e 99.4 8.9E-10 1.9E-14 104.4 27.5 276 425-708 97-388 (400)
57 COG3071 HemY Uncharacterized e 99.4 1.3E-09 2.8E-14 103.4 27.5 280 389-676 96-390 (400)
58 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 110.9 23.0 197 512-710 30-232 (234)
59 KOG0985 Vesicle coat protein c 99.3 1.2E-07 2.6E-12 99.8 42.6 613 18-692 609-1324(1666)
60 KOG1915 Cell cycle control pro 99.3 2.2E-08 4.8E-13 96.7 34.2 145 289-438 86-233 (677)
61 KOG3785 Uncharacterized conser 99.3 9.2E-09 2E-13 95.5 30.0 343 318-711 158-515 (557)
62 KOG2376 Signal recognition par 99.3 1.1E-07 2.4E-12 94.8 35.8 363 323-705 91-515 (652)
63 KOG1174 Anaphase-promoting com 99.3 1E-07 2.2E-12 90.7 33.3 271 407-683 227-507 (564)
64 KOG1173 Anaphase-promoting com 99.2 1.4E-08 3.1E-13 100.5 28.6 277 342-627 244-534 (611)
65 PF13041 PPR_2: PPR repeat fam 99.2 1E-11 2.2E-16 84.6 4.9 50 44-93 1-50 (50)
66 TIGR02521 type_IV_pilW type IV 99.2 1.9E-09 4.1E-14 103.7 22.4 163 544-710 31-198 (234)
67 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.6E-11 88.3 41.7 143 112-255 137-292 (835)
68 KOG1174 Anaphase-promoting com 99.2 1.3E-07 2.8E-12 90.0 31.8 382 312-710 98-500 (564)
69 PF13041 PPR_2: PPR repeat fam 99.2 3.4E-11 7.4E-16 81.9 5.5 49 142-190 1-49 (50)
70 KOG1129 TPR repeat-containing 99.2 9.7E-10 2.1E-14 100.7 16.2 222 483-710 228-458 (478)
71 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3E-13 104.0 26.0 231 479-709 200-478 (508)
72 PRK12370 invasion protein regu 99.2 5.9E-09 1.3E-13 112.5 24.8 243 459-711 277-536 (553)
73 COG3063 PilF Tfp pilus assembl 99.2 2.7E-09 5.9E-14 93.5 17.4 161 547-712 38-204 (250)
74 PRK11189 lipoprotein NlpI; Pro 99.2 3.5E-09 7.7E-14 104.2 20.8 115 457-572 40-160 (296)
75 KOG4162 Predicted calmodulin-b 99.1 5.3E-06 1.2E-10 85.9 41.9 386 340-758 321-771 (799)
76 PRK12370 invasion protein regu 99.1 8.6E-09 1.9E-13 111.2 23.5 211 492-710 275-502 (553)
77 KOG3616 Selective LIM binding 99.1 9.5E-06 2.1E-10 83.1 42.8 47 26-72 455-503 (1636)
78 PRK11189 lipoprotein NlpI; Pro 99.1 5E-08 1.1E-12 96.1 25.4 91 515-607 66-160 (296)
79 KOG3785 Uncharacterized conser 99.1 1.8E-06 3.9E-11 80.6 33.3 407 289-715 35-495 (557)
80 KOG0548 Molecular co-chaperone 99.1 2.3E-07 5E-12 91.8 27.7 233 481-753 227-472 (539)
81 KOG3616 Selective LIM binding 99.1 2E-06 4.4E-11 87.8 34.7 47 124-170 455-503 (1636)
82 KOG1129 TPR repeat-containing 99.1 7.2E-09 1.6E-13 95.2 15.7 235 447-686 227-468 (478)
83 KOG2376 Signal recognition par 99.1 1.9E-06 4.2E-11 86.2 33.6 408 283-709 19-486 (652)
84 KOG1840 Kinesin light chain [C 99.0 1.6E-07 3.4E-12 96.4 25.6 129 547-675 328-478 (508)
85 KOG1156 N-terminal acetyltrans 99.0 1.3E-05 2.9E-10 81.3 37.7 412 286-707 51-508 (700)
86 PF04733 Coatomer_E: Coatomer 99.0 3.6E-08 7.9E-13 95.3 19.4 148 553-710 111-265 (290)
87 PF12569 NARP1: NMDA receptor- 99.0 4.1E-06 8.8E-11 87.3 35.6 124 515-641 196-331 (517)
88 COG3063 PilF Tfp pilus assembl 99.0 1.3E-07 2.8E-12 83.2 20.1 191 517-709 39-235 (250)
89 KOG1127 TPR repeat-containing 99.0 7.5E-06 1.6E-10 87.0 36.1 639 31-692 474-1191(1238)
90 KOG1156 N-terminal acetyltrans 99.0 5.5E-06 1.2E-10 84.1 33.8 426 288-724 19-487 (700)
91 KOG0624 dsRNA-activated protei 98.9 4.3E-06 9.3E-11 77.9 28.7 311 345-684 41-378 (504)
92 KOG1125 TPR repeat-containing 98.9 3.5E-08 7.6E-13 98.3 15.9 215 489-709 296-526 (579)
93 PF12569 NARP1: NMDA receptor- 98.9 2.1E-06 4.6E-11 89.4 28.6 281 422-709 14-333 (517)
94 KOG4340 Uncharacterized conser 98.9 2E-06 4.4E-11 78.4 24.6 381 315-709 14-442 (459)
95 KOG3617 WD40 and TPR repeat-co 98.9 3.7E-05 7.9E-10 80.1 36.2 158 111-301 724-883 (1416)
96 PF04733 Coatomer_E: Coatomer 98.9 1.6E-07 3.5E-12 90.9 17.7 200 475-681 63-270 (290)
97 KOG1127 TPR repeat-containing 98.8 0.00011 2.4E-09 78.5 38.0 542 127-709 472-1103(1238)
98 KOG3617 WD40 and TPR repeat-co 98.8 0.00012 2.6E-09 76.4 37.0 450 14-537 725-1243(1416)
99 cd05804 StaR_like StaR_like; a 98.8 1.2E-05 2.6E-10 82.7 30.5 257 452-710 52-336 (355)
100 TIGR03302 OM_YfiO outer membra 98.7 6.4E-07 1.4E-11 85.8 18.1 181 511-711 31-233 (235)
101 PRK10370 formate-dependent nit 98.7 7.9E-07 1.7E-11 81.2 17.2 147 551-711 23-174 (198)
102 KOG0548 Molecular co-chaperone 98.7 3.2E-05 6.9E-10 77.1 28.6 406 286-705 12-484 (539)
103 PRK15359 type III secretion sy 98.7 9.1E-07 2E-11 76.3 15.7 90 620-709 29-120 (144)
104 PRK15359 type III secretion sy 98.7 5.5E-07 1.2E-11 77.6 13.7 123 565-693 14-138 (144)
105 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 4E-13 61.1 3.0 34 9-42 1-34 (34)
106 PRK04841 transcriptional regul 98.7 2.6E-05 5.6E-10 91.3 31.3 193 314-506 344-559 (903)
107 PRK15363 pathogenicity island 98.6 6E-07 1.3E-11 75.5 12.2 120 614-756 34-155 (157)
108 KOG0624 dsRNA-activated protei 98.6 0.00027 5.8E-09 66.3 30.1 301 316-642 43-368 (504)
109 PRK04841 transcriptional regul 98.6 0.00023 5E-09 83.4 38.3 327 321-677 384-761 (903)
110 KOG4340 Uncharacterized conser 98.6 7.6E-06 1.7E-10 74.7 19.1 287 377-705 10-334 (459)
111 KOG1070 rRNA processing protei 98.6 9.5E-06 2.1E-10 89.3 22.0 199 510-712 1455-1665(1710)
112 cd05804 StaR_like StaR_like; a 98.6 0.00012 2.7E-09 75.2 29.8 194 483-677 119-337 (355)
113 PLN02789 farnesyltranstransfer 98.6 2.8E-05 6E-10 76.5 23.4 214 490-708 49-300 (320)
114 COG5010 TadD Flp pilus assembl 98.5 5.8E-06 1.3E-10 74.8 16.2 154 548-705 70-226 (257)
115 COG5010 TadD Flp pilus assembl 98.5 1.7E-05 3.6E-10 71.9 17.9 122 585-708 72-195 (257)
116 PRK15179 Vi polysaccharide bio 98.5 4.3E-05 9.2E-10 83.1 24.0 131 577-710 84-217 (694)
117 PLN02789 farnesyltranstransfer 98.5 5.2E-05 1.1E-09 74.6 22.3 186 521-710 45-250 (320)
118 KOG1125 TPR repeat-containing 98.5 1.2E-05 2.6E-10 80.7 17.7 243 454-703 296-564 (579)
119 KOG1128 Uncharacterized conser 98.4 8E-05 1.7E-09 77.1 23.8 216 408-641 394-613 (777)
120 COG4783 Putative Zn-dependent 98.4 6.2E-05 1.3E-09 74.4 21.3 167 552-759 314-484 (484)
121 PRK10370 formate-dependent nit 98.4 3.1E-05 6.8E-10 70.7 18.2 153 520-685 23-182 (198)
122 TIGR02552 LcrH_SycD type III s 98.4 8.7E-06 1.9E-10 70.0 13.8 95 616-710 18-114 (135)
123 KOG1128 Uncharacterized conser 98.4 1.8E-05 3.9E-10 81.6 17.7 208 484-709 404-615 (777)
124 PF12854 PPR_1: PPR repeat 98.4 5.1E-07 1.1E-11 54.7 4.0 32 610-641 2-33 (34)
125 TIGR03302 OM_YfiO outer membra 98.4 2E-05 4.3E-10 75.5 17.0 183 475-678 30-234 (235)
126 PRK15179 Vi polysaccharide bio 98.3 9.8E-05 2.1E-09 80.4 23.0 137 543-683 85-224 (694)
127 KOG1070 rRNA processing protei 98.3 0.00016 3.5E-09 80.1 24.0 218 477-698 1457-1688(1710)
128 COG4783 Putative Zn-dependent 98.3 0.00021 4.6E-09 70.8 22.3 178 527-709 251-436 (484)
129 KOG3081 Vesicle coat complex C 98.3 0.00043 9.3E-09 62.9 22.2 158 517-681 112-276 (299)
130 KOG3081 Vesicle coat complex C 98.3 0.00027 5.9E-09 64.1 20.9 150 550-709 114-270 (299)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.4E-05 3E-10 80.0 14.3 123 581-708 171-295 (395)
132 TIGR02552 LcrH_SycD type III s 98.2 2.8E-05 6E-10 66.9 13.1 115 566-684 5-122 (135)
133 KOG3060 Uncharacterized conser 98.2 0.00028 6.2E-09 63.5 18.9 197 490-689 24-233 (289)
134 KOG3060 Uncharacterized conser 98.2 0.00051 1.1E-08 62.0 20.4 123 483-607 57-182 (289)
135 PRK14720 transcript cleavage f 98.2 0.00033 7.1E-09 77.1 23.4 43 650-692 226-268 (906)
136 PRK14720 transcript cleavage f 98.1 0.00046 1E-08 76.0 22.9 204 479-713 32-255 (906)
137 PLN03088 SGT1, suppressor of 98.1 4.8E-05 1E-09 76.9 14.1 100 587-688 10-111 (356)
138 TIGR02795 tol_pal_ybgF tol-pal 98.1 3.8E-05 8.2E-10 64.3 11.3 94 617-710 4-105 (119)
139 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 51.4 4.3 35 145-179 1-35 (35)
140 PF14559 TPR_19: Tetratricopep 98.1 1E-05 2.2E-10 59.6 6.4 53 658-710 2-54 (68)
141 PF13414 TPR_11: TPR repeat; P 98.1 1.2E-05 2.6E-10 59.4 6.3 65 646-710 2-67 (69)
142 PF12895 Apc3: Anaphase-promot 98.0 6.9E-06 1.5E-10 63.4 4.9 78 628-706 2-83 (84)
143 TIGR00756 PPR pentatricopeptid 98.0 7.6E-06 1.6E-10 50.7 3.9 35 47-81 1-35 (35)
144 PF13812 PPR_3: Pentatricopept 98.0 8.7E-06 1.9E-10 50.0 4.0 34 144-177 1-34 (34)
145 PF13812 PPR_3: Pentatricopept 98.0 8.7E-06 1.9E-10 50.0 3.8 34 46-79 1-34 (34)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00018 3.8E-09 62.5 13.4 114 592-706 24-143 (145)
147 PF13432 TPR_16: Tetratricopep 98.0 2.2E-05 4.7E-10 57.1 6.3 59 653-711 3-61 (65)
148 cd00189 TPR Tetratricopeptide 98.0 7.2E-05 1.6E-09 59.6 10.1 93 618-710 3-97 (100)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00028 6.1E-09 70.9 15.5 122 516-642 172-295 (395)
150 KOG0553 TPR repeat-containing 97.9 0.00012 2.7E-09 67.8 10.7 107 589-698 91-200 (304)
151 KOG2053 Mitochondrial inherita 97.9 0.062 1.3E-06 57.9 36.2 68 649-716 438-508 (932)
152 PF09976 TPR_21: Tetratricopep 97.9 0.00064 1.4E-08 59.0 14.6 124 547-674 15-145 (145)
153 COG4235 Cytochrome c biogenesi 97.9 0.00039 8.4E-09 65.1 13.6 106 611-716 152-262 (287)
154 KOG0550 Molecular chaperone (D 97.8 0.0015 3.3E-08 63.2 17.4 152 553-710 178-350 (486)
155 COG4700 Uncharacterized protei 97.8 0.0025 5.5E-08 54.5 16.6 134 575-710 85-222 (251)
156 KOG2053 Mitochondrial inherita 97.8 0.082 1.8E-06 57.1 38.9 156 546-708 438-606 (932)
157 PRK15331 chaperone protein Sic 97.8 0.00046 9.9E-09 58.7 11.4 91 619-709 41-133 (165)
158 COG3898 Uncharacterized membra 97.8 0.044 9.6E-07 53.1 27.4 249 455-718 132-398 (531)
159 PF13371 TPR_9: Tetratricopept 97.8 0.00013 2.9E-09 54.5 7.6 58 654-711 2-59 (73)
160 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00038 8.3E-09 58.2 11.3 105 582-686 5-115 (119)
161 PRK02603 photosystem I assembl 97.8 0.00031 6.8E-09 63.0 11.2 95 616-710 36-149 (172)
162 KOG1914 mRNA cleavage and poly 97.7 0.066 1.4E-06 54.3 35.8 180 459-639 347-534 (656)
163 PF07079 DUF1347: Protein of u 97.7 0.059 1.3E-06 53.4 33.1 140 563-708 361-522 (549)
164 KOG0553 TPR repeat-containing 97.7 0.00022 4.7E-09 66.3 9.5 89 622-710 88-178 (304)
165 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1E-09 45.4 3.5 31 145-175 1-31 (31)
166 PLN03088 SGT1, suppressor of 97.7 0.0006 1.3E-08 69.0 13.3 100 550-654 8-110 (356)
167 PRK10153 DNA-binding transcrip 97.7 0.0015 3.3E-08 69.0 16.6 139 542-682 335-488 (517)
168 CHL00033 ycf3 photosystem I as 97.6 0.00056 1.2E-08 61.2 10.7 93 615-707 35-139 (168)
169 KOG1914 mRNA cleavage and poly 97.6 0.11 2.3E-06 52.9 35.9 77 273-351 17-95 (656)
170 PRK02603 photosystem I assembl 97.6 0.0019 4.2E-08 57.9 13.6 129 545-696 36-166 (172)
171 PF04840 Vps16_C: Vps16, C-ter 97.6 0.099 2.1E-06 51.6 29.2 79 520-604 184-262 (319)
172 PF01535 PPR: PPR repeat; Int 97.6 7.9E-05 1.7E-09 44.4 3.1 31 47-77 1-31 (31)
173 cd00189 TPR Tetratricopeptide 97.5 0.00083 1.8E-08 53.3 9.9 92 585-678 6-99 (100)
174 KOG1538 Uncharacterized conser 97.5 0.036 7.7E-07 57.1 22.6 265 344-675 558-845 (1081)
175 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00045 9.8E-09 68.9 9.2 68 643-710 71-141 (453)
176 PF13432 TPR_16: Tetratricopep 97.5 0.00024 5.2E-09 51.5 5.6 61 621-681 3-65 (65)
177 KOG0543 FKBP-type peptidyl-pro 97.5 0.00088 1.9E-08 65.2 10.4 85 647-757 257-341 (397)
178 PF12895 Apc3: Anaphase-promot 97.5 0.00026 5.6E-09 54.5 5.6 79 557-639 2-82 (84)
179 PRK10803 tol-pal system protei 97.5 0.0014 3E-08 62.5 11.5 93 618-710 146-246 (263)
180 PRK10866 outer membrane biogen 97.4 0.018 4E-07 54.5 18.7 172 518-708 37-239 (243)
181 PF07079 DUF1347: Protein of u 97.4 0.15 3.4E-06 50.6 36.0 203 443-653 298-531 (549)
182 PF05843 Suf: Suppressor of fo 97.4 0.0043 9.3E-08 60.5 14.5 133 546-681 3-141 (280)
183 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.6E-09 44.3 2.3 32 670-701 2-33 (34)
184 PRK15363 pathogenicity island 97.4 0.0014 3.1E-08 55.5 9.0 67 644-710 32-98 (157)
185 PF08579 RPM2: Mitochondrial r 97.4 0.0022 4.7E-08 50.2 9.1 80 345-424 28-116 (120)
186 PF14559 TPR_19: Tetratricopep 97.3 0.00033 7.2E-09 51.4 4.6 61 627-687 3-65 (68)
187 PF13414 TPR_11: TPR repeat; P 97.3 0.00055 1.2E-08 50.4 4.9 65 614-678 2-69 (69)
188 PRK10153 DNA-binding transcrip 97.2 0.011 2.3E-07 62.8 16.1 134 575-712 333-484 (517)
189 PF10037 MRP-S27: Mitochondria 97.2 0.003 6.4E-08 63.9 11.3 119 307-425 62-186 (429)
190 PF12688 TPR_5: Tetratrico pep 97.2 0.0034 7.3E-08 51.4 9.6 88 621-708 7-102 (120)
191 CHL00033 ycf3 photosystem I as 97.2 0.0061 1.3E-07 54.5 12.3 62 546-607 37-100 (168)
192 COG3898 Uncharacterized membra 97.2 0.13 2.9E-06 49.9 21.1 211 490-708 96-319 (531)
193 PF14938 SNAP: Soluble NSF att 97.2 0.27 5.8E-06 48.2 27.8 96 547-642 158-264 (282)
194 PF10037 MRP-S27: Mitochondria 97.2 0.0058 1.3E-07 61.9 12.6 117 410-526 64-186 (429)
195 KOG1130 Predicted G-alpha GTPa 97.2 0.0029 6.3E-08 61.2 9.7 130 580-709 196-343 (639)
196 KOG2041 WD40 repeat protein [G 97.1 0.27 5.9E-06 51.5 24.0 30 308-337 689-718 (1189)
197 PF08579 RPM2: Mitochondrial r 97.1 0.0086 1.9E-07 47.0 10.3 79 548-627 29-116 (120)
198 KOG1538 Uncharacterized conser 97.1 0.079 1.7E-06 54.7 19.7 259 109-462 552-823 (1081)
199 PF05843 Suf: Suppressor of fo 97.1 0.0069 1.5E-07 59.1 12.0 129 580-710 2-136 (280)
200 PF13428 TPR_14: Tetratricopep 97.1 0.00096 2.1E-08 43.5 4.1 42 648-689 2-43 (44)
201 PF13281 DUF4071: Domain of un 97.1 0.078 1.7E-06 52.7 18.9 160 518-680 146-338 (374)
202 KOG2280 Vacuolar assembly/sort 97.0 0.7 1.5E-05 49.3 29.6 105 517-637 688-792 (829)
203 KOG2041 WD40 repeat protein [G 96.9 0.38 8.2E-06 50.5 22.8 53 118-170 765-822 (1189)
204 COG4700 Uncharacterized protei 96.9 0.13 2.8E-06 44.6 16.4 123 475-599 86-213 (251)
205 PF13371 TPR_9: Tetratricopept 96.9 0.0033 7.2E-08 46.8 6.3 65 623-687 3-69 (73)
206 KOG1130 Predicted G-alpha GTPa 96.9 0.0022 4.8E-08 61.9 6.4 93 615-707 195-301 (639)
207 KOG0543 FKBP-type peptidyl-pro 96.9 0.014 3.1E-07 57.1 11.9 95 616-710 258-355 (397)
208 PRK10866 outer membrane biogen 96.9 0.31 6.7E-06 46.3 20.7 61 448-508 37-99 (243)
209 PF06239 ECSIT: Evolutionarily 96.9 0.0069 1.5E-07 54.0 8.7 97 331-427 34-153 (228)
210 PF14938 SNAP: Soluble NSF att 96.8 0.14 3.1E-06 50.2 18.9 147 519-678 100-268 (282)
211 PF13424 TPR_12: Tetratricopep 96.8 0.0024 5.1E-08 48.3 4.7 62 648-709 6-74 (78)
212 PRK10803 tol-pal system protei 96.8 0.016 3.4E-07 55.4 11.2 101 582-682 146-252 (263)
213 KOG0550 Molecular chaperone (D 96.8 0.071 1.5E-06 52.2 15.2 155 521-678 177-352 (486)
214 PF12688 TPR_5: Tetratrico pep 96.7 0.049 1.1E-06 44.6 12.4 91 449-539 7-101 (120)
215 PF04840 Vps16_C: Vps16, C-ter 96.7 0.71 1.5E-05 45.7 27.2 105 314-434 180-284 (319)
216 PF03704 BTAD: Bacterial trans 96.7 0.04 8.8E-07 47.8 12.4 107 589-709 16-124 (146)
217 PF06239 ECSIT: Evolutionarily 96.6 0.027 6E-07 50.3 10.4 90 540-630 43-153 (228)
218 PF13512 TPR_18: Tetratricopep 96.5 0.05 1.1E-06 45.5 11.2 89 622-710 17-128 (142)
219 KOG2796 Uncharacterized conser 96.5 0.1 2.2E-06 47.8 13.5 133 547-679 180-318 (366)
220 COG4235 Cytochrome c biogenesi 96.5 0.085 1.8E-06 49.9 13.6 103 576-680 152-260 (287)
221 PF13525 YfiO: Outer membrane 96.4 0.2 4.3E-06 46.3 15.9 163 521-702 13-199 (203)
222 PRK11906 transcriptional regul 96.3 0.065 1.4E-06 54.1 12.7 145 559-705 273-431 (458)
223 PF13525 YfiO: Outer membrane 96.3 0.57 1.2E-05 43.2 18.2 177 449-634 11-197 (203)
224 KOG2796 Uncharacterized conser 96.2 0.88 1.9E-05 42.0 17.9 131 583-714 181-319 (366)
225 PF13424 TPR_12: Tetratricopep 96.1 0.0077 1.7E-07 45.5 3.9 60 617-676 7-75 (78)
226 KOG2280 Vacuolar assembly/sort 96.1 2.6 5.7E-05 45.2 29.0 111 579-705 684-794 (829)
227 KOG4555 TPR repeat-containing 96.0 0.044 9.5E-07 44.1 7.8 88 624-711 52-145 (175)
228 COG0457 NrfG FOG: TPR repeat [ 96.0 1.5 3.1E-05 41.6 26.6 194 513-710 59-265 (291)
229 KOG2114 Vacuolar assembly/sort 95.9 3.4 7.3E-05 45.0 24.4 50 518-567 710-759 (933)
230 PRK11906 transcriptional regul 95.9 0.38 8.2E-06 48.8 15.6 142 529-676 274-436 (458)
231 KOG4234 TPR repeat-containing 95.9 0.051 1.1E-06 47.4 8.1 61 650-710 137-197 (271)
232 PF13428 TPR_14: Tetratricopep 95.8 0.026 5.7E-07 36.7 4.8 30 681-710 1-30 (44)
233 COG3118 Thioredoxin domain-con 95.7 0.45 9.8E-06 45.0 14.3 120 588-710 143-265 (304)
234 PF13281 DUF4071: Domain of un 95.7 1.4 3E-05 44.2 18.4 76 413-488 142-227 (374)
235 KOG1920 IkappaB kinase complex 95.6 4.4 9.5E-05 46.1 23.4 144 515-674 910-1053(1265)
236 COG1729 Uncharacterized protei 95.5 0.088 1.9E-06 49.1 9.0 60 653-712 184-246 (262)
237 PF09205 DUF1955: Domain of un 95.5 1.1 2.4E-05 36.6 14.5 140 555-713 13-152 (161)
238 COG3118 Thioredoxin domain-con 95.5 1.6 3.6E-05 41.3 16.9 152 552-706 142-297 (304)
239 PF12921 ATP13: Mitochondrial 95.4 0.21 4.5E-06 41.5 10.0 95 513-623 2-96 (126)
240 PRK15331 chaperone protein Sic 95.4 0.37 8.1E-06 41.4 11.5 92 585-679 43-136 (165)
241 KOG1585 Protein required for f 95.3 2.3 4.9E-05 39.0 16.9 88 617-705 152-251 (308)
242 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.098 2.1E-06 52.8 9.2 63 614-676 74-141 (453)
243 PF03704 BTAD: Bacterial trans 95.3 0.14 3.1E-06 44.3 9.2 69 547-617 65-138 (146)
244 COG5107 RNA14 Pre-mRNA 3'-end 95.2 3.9 8.4E-05 41.1 33.5 134 544-680 397-535 (660)
245 COG0457 NrfG FOG: TPR repeat [ 95.2 2.8 6.1E-05 39.6 25.2 198 478-679 59-268 (291)
246 PF00515 TPR_1: Tetratricopept 95.2 0.032 6.9E-07 33.8 3.5 32 648-679 2-33 (34)
247 PF07719 TPR_2: Tetratricopept 95.2 0.045 9.8E-07 33.0 4.2 31 649-679 3-33 (34)
248 PF10300 DUF3808: Protein of u 95.1 1.1 2.4E-05 47.4 16.6 115 592-709 246-375 (468)
249 KOG2610 Uncharacterized conser 95.0 0.59 1.3E-05 44.7 12.5 147 557-706 116-272 (491)
250 PF02259 FAT: FAT domain; Int 95.0 3.5 7.5E-05 42.2 20.1 150 542-694 144-305 (352)
251 COG5107 RNA14 Pre-mRNA 3'-end 94.8 5.2 0.00011 40.3 31.7 141 444-589 398-545 (660)
252 KOG4555 TPR repeat-containing 94.7 0.09 2E-06 42.4 5.7 56 654-709 50-105 (175)
253 KOG3941 Intermediate in Toll s 94.7 0.19 4.2E-06 46.5 8.5 99 330-428 53-174 (406)
254 COG4105 ComL DNA uptake lipopr 94.7 3.7 8.1E-05 38.3 17.6 57 652-708 172-231 (254)
255 KOG1941 Acetylcholine receptor 94.6 4.2 9.2E-05 39.6 17.1 25 682-706 332-356 (518)
256 PRK11619 lytic murein transgly 94.6 9.2 0.0002 42.3 30.7 68 420-489 107-174 (644)
257 KOG2114 Vacuolar assembly/sort 94.6 8.8 0.00019 42.0 27.0 120 14-140 333-458 (933)
258 KOG2610 Uncharacterized conser 94.5 0.42 9E-06 45.6 10.4 117 590-708 114-236 (491)
259 PF12921 ATP13: Mitochondrial 94.3 0.44 9.5E-06 39.6 9.2 76 580-655 3-96 (126)
260 KOG1941 Acetylcholine receptor 94.2 0.87 1.9E-05 44.1 11.9 46 453-498 16-63 (518)
261 COG1729 Uncharacterized protei 94.2 0.52 1.1E-05 44.2 10.3 91 591-683 153-251 (262)
262 KOG1258 mRNA processing protei 94.1 9.2 0.0002 40.3 29.1 181 512-696 296-490 (577)
263 PF04184 ST7: ST7 protein; In 94.0 1.3 2.8E-05 45.2 13.3 141 555-709 179-323 (539)
264 smart00299 CLH Clathrin heavy 93.9 3.4 7.5E-05 35.3 14.6 40 484-524 13-52 (140)
265 PF04053 Coatomer_WDAD: Coatom 93.8 1.7 3.6E-05 45.3 14.3 159 349-537 268-426 (443)
266 PF08631 SPO22: Meiosis protei 93.7 7.4 0.00016 38.0 24.2 98 480-579 86-192 (278)
267 COG4105 ComL DNA uptake lipopr 93.7 6.1 0.00013 36.9 16.1 56 550-607 173-232 (254)
268 KOG4648 Uncharacterized conser 93.6 0.25 5.4E-06 47.1 7.2 93 586-681 104-199 (536)
269 PF13512 TPR_18: Tetratricopep 93.6 1.8 3.9E-05 36.4 11.3 114 551-682 17-134 (142)
270 smart00299 CLH Clathrin heavy 93.4 4.5 9.7E-05 34.6 15.3 125 548-692 11-136 (140)
271 KOG1586 Protein required for f 93.4 4.9 0.00011 36.7 14.3 19 661-679 209-227 (288)
272 PF13176 TPR_7: Tetratricopept 93.4 0.16 3.5E-06 31.1 3.9 26 683-708 1-26 (36)
273 PF09205 DUF1955: Domain of un 93.3 4 8.6E-05 33.5 12.3 62 548-611 90-151 (161)
274 PF10300 DUF3808: Protein of u 93.2 1.1 2.3E-05 47.5 12.1 129 582-710 191-334 (468)
275 KOG3941 Intermediate in Toll s 93.2 0.9 1.9E-05 42.4 9.7 98 533-631 54-174 (406)
276 KOG1920 IkappaB kinase complex 93.1 12 0.00027 42.8 19.8 151 527-705 894-1050(1265)
277 PF13181 TPR_8: Tetratricopept 92.9 0.17 3.6E-06 30.5 3.4 30 649-678 3-32 (34)
278 PF09613 HrpB1_HrpK: Bacterial 92.7 0.74 1.6E-05 39.5 8.0 82 616-697 8-94 (160)
279 PF07035 Mic1: Colon cancer-as 92.6 5.9 0.00013 34.7 13.6 135 362-506 14-148 (167)
280 KOG0890 Protein kinase of the 92.6 35 0.00076 42.7 27.9 312 383-712 1389-1733(2382)
281 TIGR02561 HrpB1_HrpK type III 92.5 0.71 1.5E-05 38.8 7.4 50 660-709 23-72 (153)
282 PF04184 ST7: ST7 protein; In 92.1 16 0.00035 37.7 20.6 58 548-606 263-322 (539)
283 PF07719 TPR_2: Tetratricopept 92.1 0.29 6.3E-06 29.3 3.8 30 681-710 1-30 (34)
284 PRK09687 putative lyase; Provi 91.7 14 0.0003 36.0 25.5 26 652-678 240-265 (280)
285 KOG4234 TPR repeat-containing 91.6 1.8 3.9E-05 38.3 9.1 119 589-709 105-232 (271)
286 PF13176 TPR_7: Tetratricopept 91.5 0.27 5.8E-06 30.1 3.1 28 649-676 1-28 (36)
287 PRK15180 Vi polysaccharide bio 91.5 2.6 5.7E-05 42.5 11.3 127 590-718 300-428 (831)
288 PF04053 Coatomer_WDAD: Coatom 91.5 3.2 6.9E-05 43.3 12.7 157 520-706 268-427 (443)
289 KOG1585 Protein required for f 91.4 12 0.00025 34.7 14.7 89 549-638 155-250 (308)
290 COG4785 NlpI Lipoprotein NlpI, 91.2 11 0.00024 34.1 13.8 60 513-572 99-161 (297)
291 COG3947 Response regulator con 91.2 8.9 0.00019 36.4 13.7 60 650-709 282-341 (361)
292 PF00515 TPR_1: Tetratricopept 91.0 0.46 9.9E-06 28.5 3.8 29 682-710 2-30 (34)
293 COG4785 NlpI Lipoprotein NlpI, 90.7 12 0.00027 33.8 15.3 158 544-710 99-266 (297)
294 COG4649 Uncharacterized protei 90.4 5.4 0.00012 34.5 10.5 54 524-577 143-200 (221)
295 PF13174 TPR_6: Tetratricopept 90.2 0.4 8.7E-06 28.4 3.1 28 683-710 2-29 (33)
296 COG3629 DnrI DNA-binding trans 90.2 1.4 3.1E-05 42.0 8.0 62 648-709 154-215 (280)
297 PF09613 HrpB1_HrpK: Bacterial 90.1 12 0.00025 32.4 12.9 86 590-678 21-108 (160)
298 COG2976 Uncharacterized protei 90.0 14 0.00029 33.0 13.3 90 587-678 97-190 (207)
299 KOG4648 Uncharacterized conser 90.0 0.95 2E-05 43.4 6.5 86 551-647 104-198 (536)
300 COG4649 Uncharacterized protei 89.8 13 0.00027 32.4 15.6 122 554-675 68-195 (221)
301 PF10602 RPN7: 26S proteasome 89.8 5.8 0.00013 35.5 11.3 96 546-641 38-139 (177)
302 PF13170 DUF4003: Protein of u 89.5 6.6 0.00014 38.5 12.3 125 160-316 78-222 (297)
303 KOG3364 Membrane protein invol 89.4 2.9 6.3E-05 34.4 7.9 66 645-710 30-100 (149)
304 PF07721 TPR_4: Tetratricopept 89.3 0.58 1.2E-05 26.1 2.9 24 682-705 2-25 (26)
305 PF13170 DUF4003: Protein of u 89.1 12 0.00027 36.6 13.8 63 561-624 160-226 (297)
306 PRK10941 hypothetical protein; 89.0 4.8 0.0001 38.6 10.7 82 649-753 183-264 (269)
307 KOG1258 mRNA processing protei 88.9 35 0.00075 36.2 25.8 130 311-441 45-180 (577)
308 PF13181 TPR_8: Tetratricopept 88.7 1 2.2E-05 26.9 4.0 28 682-709 2-29 (34)
309 PF02259 FAT: FAT domain; Int 88.3 32 0.00069 35.0 22.8 54 449-506 4-57 (352)
310 KOG2066 Vacuolar assembly/sort 88.2 45 0.00097 36.6 23.8 38 627-667 673-710 (846)
311 PF04097 Nic96: Nup93/Nic96; 88.1 47 0.001 36.8 20.2 87 449-540 264-354 (613)
312 PF14561 TPR_20: Tetratricopep 88.0 2.9 6.3E-05 32.3 7.0 43 668-710 9-51 (90)
313 COG3629 DnrI DNA-binding trans 87.8 5.1 0.00011 38.4 9.8 72 547-620 156-232 (280)
314 PF07035 Mic1: Colon cancer-as 87.4 19 0.00042 31.5 15.6 31 399-429 16-46 (167)
315 KOG4570 Uncharacterized conser 87.4 5.7 0.00012 38.0 9.6 100 507-607 58-163 (418)
316 PF08631 SPO22: Meiosis protei 87.3 30 0.00066 33.8 22.9 21 686-706 251-271 (278)
317 PF13374 TPR_10: Tetratricopep 87.3 1.2 2.5E-05 28.2 4.0 26 650-675 5-30 (42)
318 KOG0890 Protein kinase of the 87.1 96 0.0021 39.2 25.0 309 347-677 1388-1732(2382)
319 PF13374 TPR_10: Tetratricopep 86.9 1.2 2.6E-05 28.2 3.8 28 682-709 3-30 (42)
320 PF13174 TPR_6: Tetratricopept 86.7 1.1 2.4E-05 26.4 3.4 30 650-679 3-32 (33)
321 PF00637 Clathrin: Region in C 86.6 0.29 6.2E-06 42.2 0.9 18 211-228 123-140 (143)
322 PF06552 TOM20_plant: Plant sp 86.5 1.6 3.5E-05 38.1 5.3 83 595-679 7-112 (186)
323 KOG1550 Extracellular protein 86.3 56 0.0012 35.7 22.6 146 558-709 378-537 (552)
324 PRK12798 chemotaxis protein; R 86.0 42 0.00092 34.1 23.8 184 525-710 124-324 (421)
325 PF14853 Fis1_TPR_C: Fis1 C-te 85.5 3.2 6.9E-05 28.1 5.2 36 651-686 5-40 (53)
326 PF02284 COX5A: Cytochrome c o 85.3 5.7 0.00012 30.9 7.0 60 562-623 28-87 (108)
327 COG2976 Uncharacterized protei 85.1 27 0.00058 31.3 11.9 90 621-711 95-189 (207)
328 KOG0276 Vesicle coat complex C 85.0 17 0.00037 38.3 12.4 149 525-706 598-746 (794)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 84.8 6.4 0.00014 30.3 7.0 63 559-623 22-84 (103)
330 KOG1464 COP9 signalosome, subu 84.8 9 0.0002 35.7 9.4 153 594-760 42-210 (440)
331 TIGR03504 FimV_Cterm FimV C-te 84.4 2 4.3E-05 27.7 3.7 27 685-711 3-29 (44)
332 PF11207 DUF2989: Protein of u 84.0 6 0.00013 35.6 7.7 70 632-701 123-198 (203)
333 PHA02875 ankyrin repeat protei 84.0 59 0.0013 34.0 18.3 37 3-39 18-56 (413)
334 PF06552 TOM20_plant: Plant sp 83.8 8.2 0.00018 33.9 8.3 96 560-657 7-123 (186)
335 TIGR02561 HrpB1_HrpK type III 83.7 8.2 0.00018 32.7 7.9 76 579-659 7-89 (153)
336 smart00028 TPR Tetratricopepti 83.4 2 4.4E-05 24.6 3.5 29 650-678 4-32 (34)
337 KOG4642 Chaperone-dependent E3 83.3 4 8.8E-05 37.4 6.4 51 657-707 54-104 (284)
338 KOG1308 Hsp70-interacting prot 83.2 0.74 1.6E-05 44.4 2.0 88 629-716 128-217 (377)
339 KOG1464 COP9 signalosome, subu 82.0 46 0.00099 31.3 19.9 220 446-671 68-327 (440)
340 PF10602 RPN7: 26S proteasome 81.9 15 0.00032 32.9 9.7 60 447-506 40-101 (177)
341 PF13762 MNE1: Mitochondrial s 81.6 4.9 0.00011 34.0 6.0 76 17-92 41-126 (145)
342 PF04097 Nic96: Nup93/Nic96; 81.4 94 0.002 34.5 19.2 20 626-645 516-535 (613)
343 KOG0376 Serine-threonine phosp 81.1 1.9 4.1E-05 43.9 4.0 82 627-708 16-99 (476)
344 PF14853 Fis1_TPR_C: Fis1 C-te 81.0 12 0.00027 25.3 6.7 28 683-710 3-30 (53)
345 KOG4507 Uncharacterized conser 80.7 5.2 0.00011 41.7 6.9 100 590-692 618-721 (886)
346 TIGR02508 type_III_yscG type I 80.7 25 0.00054 27.4 9.0 61 520-583 46-106 (115)
347 COG4455 ImpE Protein of avirul 80.1 10 0.00022 34.4 7.6 62 618-679 4-67 (273)
348 PF13431 TPR_17: Tetratricopep 79.7 3 6.6E-05 25.0 3.2 23 511-533 11-33 (34)
349 KOG0545 Aryl-hydrocarbon recep 79.3 13 0.00027 34.4 8.1 60 651-710 234-293 (329)
350 COG1747 Uncharacterized N-term 78.5 90 0.002 32.6 23.9 89 446-539 69-157 (711)
351 PF14432 DYW_deaminase: DYW fa 78.4 1.5 3.2E-05 35.8 2.0 31 717-751 2-32 (116)
352 KOG0403 Neoplastic transformat 78.0 86 0.0019 32.1 15.2 70 315-388 513-585 (645)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 77.6 15 0.00033 28.4 6.8 44 361-404 26-69 (103)
354 TIGR02508 type_III_yscG type I 77.3 27 0.00059 27.2 8.1 50 222-271 48-98 (115)
355 KOG0276 Vesicle coat complex C 77.2 21 0.00046 37.6 10.0 100 422-538 647-746 (794)
356 PRK09687 putative lyase; Provi 76.8 78 0.0017 30.9 25.2 74 511-589 204-277 (280)
357 KOG2066 Vacuolar assembly/sort 75.9 1.3E+02 0.0029 33.3 23.5 106 150-288 362-467 (846)
358 KOG4570 Uncharacterized conser 75.3 39 0.00084 32.7 10.3 102 305-407 58-165 (418)
359 COG4976 Predicted methyltransf 75.2 5.5 0.00012 36.3 4.7 56 657-712 5-60 (287)
360 KOG4279 Serine/threonine prote 75.0 1E+02 0.0022 33.9 14.3 100 554-680 297-399 (1226)
361 KOG1550 Extracellular protein 74.7 1.4E+02 0.003 32.8 16.8 15 494-508 228-242 (552)
362 smart00028 TPR Tetratricopepti 74.6 6 0.00013 22.4 3.7 29 682-710 2-30 (34)
363 PF02284 COX5A: Cytochrome c o 73.7 20 0.00044 28.1 6.7 47 360-406 28-74 (108)
364 PRK15180 Vi polysaccharide bio 73.0 20 0.00043 36.6 8.3 101 552-655 331-433 (831)
365 PF10345 Cohesin_load: Cohesin 72.1 1.7E+02 0.0036 32.6 24.1 48 658-705 372-428 (608)
366 PF09986 DUF2225: Uncharacteri 72.0 24 0.00052 32.7 8.4 62 649-710 120-194 (214)
367 PF00637 Clathrin: Region in C 71.9 2.8 6E-05 36.0 2.2 83 282-367 13-95 (143)
368 PF11207 DUF2989: Protein of u 71.4 37 0.00081 30.7 8.9 73 460-533 123-198 (203)
369 KOG2396 HAT (Half-A-TPR) repea 70.7 1.4E+02 0.0031 31.2 29.8 32 143-174 104-135 (568)
370 COG4455 ImpE Protein of avirul 70.5 88 0.0019 28.7 11.9 124 547-679 4-137 (273)
371 KOG0530 Protein farnesyltransf 70.4 99 0.0022 29.3 12.7 89 631-719 94-185 (318)
372 KOG2063 Vacuolar assembly/sort 69.7 1.1E+02 0.0025 34.9 14.1 27 445-471 506-532 (877)
373 PF12862 Apc5: Anaphase-promot 69.5 13 0.00027 29.1 5.2 53 657-709 8-69 (94)
374 PRK11619 lytic murein transgly 69.4 1.9E+02 0.0042 32.3 39.2 82 622-703 414-498 (644)
375 PF13929 mRNA_stabil: mRNA sta 68.6 1.2E+02 0.0025 29.4 13.7 57 408-464 198-259 (292)
376 KOG0991 Replication factor C, 68.5 1E+02 0.0022 28.7 14.3 152 518-695 135-286 (333)
377 KOG3807 Predicted membrane pro 67.9 78 0.0017 30.8 10.6 55 550-606 281-338 (556)
378 PF07163 Pex26: Pex26 protein; 67.1 69 0.0015 30.6 9.9 87 450-536 90-181 (309)
379 PF10579 Rapsyn_N: Rapsyn N-te 66.4 16 0.00035 27.0 4.6 46 556-601 18-65 (80)
380 PF04910 Tcf25: Transcriptiona 66.4 1.6E+02 0.0034 30.1 18.3 52 587-641 111-165 (360)
381 KOG2063 Vacuolar assembly/sort 66.1 1.3E+02 0.0028 34.5 13.6 118 624-753 600-744 (877)
382 cd08819 CARD_MDA5_2 Caspase ac 64.7 47 0.001 25.3 6.9 63 499-563 23-85 (88)
383 KOG4077 Cytochrome c oxidase, 64.3 41 0.00088 27.6 6.9 59 562-622 67-125 (149)
384 PF09670 Cas_Cas02710: CRISPR- 63.7 94 0.002 32.0 11.5 52 555-607 142-197 (379)
385 KOG2062 26S proteasome regulat 63.6 2.4E+02 0.0052 31.2 31.1 85 554-641 511-597 (929)
386 COG2909 MalT ATP-dependent tra 63.6 2.7E+02 0.0058 31.7 29.5 24 584-607 623-646 (894)
387 cd08819 CARD_MDA5_2 Caspase ac 63.2 53 0.0012 25.0 6.9 64 397-462 22-85 (88)
388 PHA02875 ankyrin repeat protei 63.2 2E+02 0.0043 30.1 17.2 74 100-178 50-129 (413)
389 COG1747 Uncharacterized N-term 62.8 2.1E+02 0.0045 30.2 21.8 178 475-657 63-249 (711)
390 COG5159 RPN6 26S proteasome re 62.7 51 0.0011 31.4 8.3 61 150-237 9-69 (421)
391 PF14561 TPR_20: Tetratricopep 62.4 70 0.0015 24.7 8.2 56 644-699 19-76 (90)
392 PF04910 Tcf25: Transcriptiona 62.3 1.9E+02 0.0041 29.6 13.7 64 646-709 99-167 (360)
393 smart00386 HAT HAT (Half-A-TPR 61.8 14 0.0003 21.3 3.3 29 661-689 1-29 (33)
394 PF10255 Paf67: RNA polymerase 61.6 31 0.00067 35.3 7.4 29 680-708 163-191 (404)
395 PRK13184 pknD serine/threonine 61.2 3.3E+02 0.0071 31.9 26.7 24 348-371 481-504 (932)
396 TIGR03504 FimV_Cterm FimV C-te 60.1 17 0.00037 23.4 3.5 25 150-174 5-29 (44)
397 PF11768 DUF3312: Protein of u 59.5 1.4E+02 0.0031 31.8 11.7 56 517-572 412-472 (545)
398 KOG2471 TPR repeat-containing 59.5 2.3E+02 0.005 29.6 13.3 320 268-626 9-380 (696)
399 PF07720 TPR_3: Tetratricopept 59.4 28 0.0006 21.3 4.2 18 652-669 6-23 (36)
400 COG2909 MalT ATP-dependent tra 59.4 3.1E+02 0.0068 31.2 25.1 219 489-707 426-685 (894)
401 PF13762 MNE1: Mitochondrial s 59.1 83 0.0018 26.9 8.3 86 216-324 42-128 (145)
402 PF09477 Type_III_YscG: Bacter 59.1 91 0.002 24.9 8.2 79 493-574 21-99 (116)
403 PF10579 Rapsyn_N: Rapsyn N-te 59.0 21 0.00046 26.4 4.2 45 659-703 18-65 (80)
404 PRK10941 hypothetical protein; 57.9 70 0.0015 30.9 8.8 68 619-686 185-254 (269)
405 PRK13800 putative oxidoreducta 57.2 3.9E+02 0.0084 31.6 27.0 183 511-708 696-879 (897)
406 PF14863 Alkyl_sulf_dimr: Alky 55.6 51 0.0011 28.0 6.6 64 632-698 58-121 (141)
407 PF11848 DUF3368: Domain of un 55.4 43 0.00093 22.1 4.9 37 151-187 9-45 (48)
408 COG3947 Response regulator con 55.4 2E+02 0.0044 27.8 12.5 58 547-606 282-340 (361)
409 PF12968 DUF3856: Domain of Un 55.1 1.2E+02 0.0025 24.9 10.3 60 648-707 56-126 (144)
410 PF07163 Pex26: Pex26 protein; 54.8 1.5E+02 0.0033 28.4 9.9 83 520-602 90-181 (309)
411 PF13929 mRNA_stabil: mRNA sta 54.2 2.2E+02 0.0047 27.7 14.6 63 475-537 199-262 (292)
412 COG5159 RPN6 26S proteasome re 53.9 2.1E+02 0.0046 27.5 14.1 52 551-602 10-68 (421)
413 PRK13342 recombination factor 53.7 2.9E+02 0.0062 29.0 15.4 101 475-593 173-279 (413)
414 KOG3824 Huntingtin interacting 53.4 26 0.00057 33.5 4.9 63 625-687 126-190 (472)
415 COG2912 Uncharacterized conser 53.2 45 0.00098 31.8 6.5 60 651-710 185-244 (269)
416 PF04190 DUF410: Protein of un 53.1 2.2E+02 0.0047 27.5 16.5 81 614-710 89-170 (260)
417 PF10366 Vps39_1: Vacuolar sor 53.1 1.1E+02 0.0024 24.6 7.9 27 546-572 41-67 (108)
418 PF00244 14-3-3: 14-3-3 protei 52.6 2.1E+02 0.0045 27.1 11.5 161 550-711 7-199 (236)
419 PRK10564 maltose regulon perip 52.6 24 0.00052 34.1 4.6 42 142-183 254-296 (303)
420 COG4941 Predicted RNA polymera 52.1 2.5E+02 0.0054 27.8 12.2 122 558-683 270-401 (415)
421 KOG3364 Membrane protein invol 52.0 93 0.002 26.1 7.1 71 612-682 29-106 (149)
422 KOG2581 26S proteasome regulat 51.7 2.4E+02 0.0052 28.8 11.1 91 588-678 178-278 (493)
423 KOG4507 Uncharacterized conser 51.3 1.3E+02 0.0028 32.1 9.7 133 576-711 568-706 (886)
424 KOG0551 Hsp90 co-chaperone CNS 51.0 65 0.0014 31.6 7.1 87 621-707 87-179 (390)
425 PF11846 DUF3366: Domain of un 49.9 49 0.0011 30.1 6.3 36 643-678 140-175 (193)
426 PF11846 DUF3366: Domain of un 49.6 51 0.0011 30.0 6.3 31 611-641 140-170 (193)
427 PF10366 Vps39_1: Vacuolar sor 49.4 1.1E+02 0.0024 24.7 7.3 28 444-471 40-67 (108)
428 PF04090 RNA_pol_I_TF: RNA pol 48.7 2.1E+02 0.0046 26.0 10.2 29 545-573 42-70 (199)
429 COG0790 FOG: TPR repeat, SEL1 48.7 2.7E+02 0.0059 27.3 19.7 76 633-711 173-267 (292)
430 COG4976 Predicted methyltransf 48.3 32 0.00069 31.7 4.4 55 626-680 6-62 (287)
431 PF08311 Mad3_BUB1_I: Mad3/BUB 47.6 1.5E+02 0.0032 24.8 8.1 42 665-706 81-124 (126)
432 KOG1839 Uncharacterized protei 47.4 1.8E+02 0.0039 34.5 11.1 151 588-757 941-1115(1236)
433 PF04090 RNA_pol_I_TF: RNA pol 47.2 58 0.0013 29.5 6.0 92 648-739 42-134 (199)
434 PHA03100 ankyrin repeat protei 46.3 4E+02 0.0087 28.5 16.5 21 221-241 255-275 (480)
435 KOG1308 Hsp70-interacting prot 45.9 28 0.00061 34.1 4.0 116 591-709 126-243 (377)
436 KOG1586 Protein required for f 45.8 2.6E+02 0.0056 26.2 20.9 18 556-573 166-183 (288)
437 cd00280 TRFH Telomeric Repeat 45.3 99 0.0021 27.5 6.7 18 624-641 120-137 (200)
438 PF12862 Apc5: Anaphase-promot 44.9 66 0.0014 25.0 5.4 27 651-677 45-71 (94)
439 KOG4279 Serine/threonine prote 44.5 4.6E+02 0.01 29.2 12.6 191 496-710 181-395 (1226)
440 COG5191 Uncharacterized conser 44.2 46 0.00099 32.1 5.0 79 611-689 103-184 (435)
441 cd08326 CARD_CASP9 Caspase act 43.9 40 0.00087 25.6 3.8 37 26-62 41-77 (84)
442 PF09670 Cas_Cas02710: CRISPR- 43.7 1.5E+02 0.0033 30.5 9.2 54 587-642 139-196 (379)
443 KOG4642 Chaperone-dependent E3 42.9 2.9E+02 0.0064 26.0 10.1 80 593-675 24-106 (284)
444 PHA02878 ankyrin repeat protei 42.1 4.6E+02 0.01 28.0 18.9 49 22-71 41-92 (477)
445 PF10345 Cohesin_load: Cohesin 41.8 5.4E+02 0.012 28.7 38.1 57 652-708 539-604 (608)
446 PF11848 DUF3368: Domain of un 41.6 65 0.0014 21.3 4.1 38 53-90 9-46 (48)
447 PF13934 ELYS: Nuclear pore co 41.6 3E+02 0.0066 25.8 12.9 71 585-659 114-184 (226)
448 PF14689 SPOB_a: Sensor_kinase 40.9 29 0.00064 24.4 2.6 21 585-605 29-49 (62)
449 KOG3824 Huntingtin interacting 40.8 93 0.002 30.0 6.4 50 589-641 126-176 (472)
450 PF11838 ERAP1_C: ERAP1-like C 39.4 4E+02 0.0087 26.5 18.8 111 595-706 146-262 (324)
451 KOG4521 Nuclear pore complex, 38.4 7.5E+02 0.016 29.4 14.7 18 522-539 929-946 (1480)
452 KOG2034 Vacuolar sorting prote 38.2 6.7E+02 0.014 28.8 18.7 51 21-73 364-416 (911)
453 PF06957 COPI_C: Coatomer (COP 37.8 1.8E+02 0.004 30.1 8.5 45 636-680 287-333 (422)
454 PF14689 SPOB_a: Sensor_kinase 36.8 72 0.0016 22.5 4.0 24 548-571 27-50 (62)
455 KOG4567 GTPase-activating prot 36.4 4.3E+02 0.0092 26.0 10.3 73 564-642 263-345 (370)
456 KOG4077 Cytochrome c oxidase, 35.8 1.9E+02 0.0041 24.0 6.4 46 642-687 79-124 (149)
457 KOG0686 COP9 signalosome, subu 35.2 5.1E+02 0.011 26.6 13.3 61 445-506 152-215 (466)
458 PF10516 SHNi-TPR: SHNi-TPR; 35.1 88 0.0019 19.5 3.7 28 682-709 2-29 (38)
459 KOG0376 Serine-threonine phosp 35.0 78 0.0017 32.8 5.4 53 553-607 13-66 (476)
460 PF14669 Asp_Glu_race_2: Putat 34.4 3.5E+02 0.0076 24.4 13.8 22 547-568 184-205 (233)
461 PF04762 IKI3: IKI3 family; I 34.0 3.6E+02 0.0079 31.8 11.3 102 580-707 813-927 (928)
462 PHA02537 M terminase endonucle 33.6 4.1E+02 0.0089 25.0 9.5 20 659-678 190-209 (230)
463 COG5108 RPO41 Mitochondrial DN 33.2 2.6E+02 0.0056 30.5 8.8 72 118-192 33-116 (1117)
464 PF11663 Toxin_YhaV: Toxin wit 32.8 64 0.0014 26.9 3.6 34 354-389 107-140 (140)
465 KOG0545 Aryl-hydrocarbon recep 32.6 4.4E+02 0.0095 25.0 9.2 68 618-685 233-302 (329)
466 KOG0686 COP9 signalosome, subu 32.4 5.7E+02 0.012 26.3 13.7 59 514-572 151-215 (466)
467 PRK10564 maltose regulon perip 32.2 69 0.0015 31.1 4.3 36 345-380 260-295 (303)
468 KOG2422 Uncharacterized conser 31.7 7E+02 0.015 27.0 16.5 55 551-607 349-406 (665)
469 PRK13800 putative oxidoreducta 31.6 9.3E+02 0.02 28.5 26.2 254 332-607 625-880 (897)
470 KOG4567 GTPase-activating prot 31.4 4.8E+02 0.01 25.6 9.4 73 362-439 263-345 (370)
471 TIGR02710 CRISPR-associated pr 31.4 5.9E+02 0.013 26.1 11.9 55 550-604 136-196 (380)
472 KOG0889 Histone acetyltransfer 31.2 1.6E+03 0.034 31.0 17.3 59 308-369 2451-2509(3550)
473 cd08332 CARD_CASP2 Caspase act 31.0 75 0.0016 24.5 3.6 34 27-60 46-79 (90)
474 PHA03100 ankyrin repeat protei 30.3 7E+02 0.015 26.6 14.9 151 19-178 36-203 (480)
475 KOG0991 Replication factor C, 30.3 4.7E+02 0.01 24.6 10.5 40 539-579 234-273 (333)
476 PF04190 DUF410: Protein of un 30.3 5.1E+02 0.011 25.0 18.0 28 511-538 88-115 (260)
477 cd00280 TRFH Telomeric Repeat 29.8 1.8E+02 0.0039 26.0 5.9 45 652-697 116-160 (200)
478 PF12796 Ank_2: Ankyrin repeat 29.8 1.7E+02 0.0037 22.0 5.7 55 119-178 29-86 (89)
479 KOG2396 HAT (Half-A-TPR) repea 29.7 7.1E+02 0.015 26.5 32.1 90 619-708 464-557 (568)
480 COG4259 Uncharacterized protei 29.5 2.1E+02 0.0046 22.4 5.5 33 653-685 78-110 (121)
481 PF11838 ERAP1_C: ERAP1-like C 29.2 5.8E+02 0.013 25.3 15.0 59 346-407 173-231 (324)
482 PF14669 Asp_Glu_race_2: Putat 28.8 4.4E+02 0.0096 23.8 13.8 55 549-603 137-205 (233)
483 KOG1498 26S proteasome regulat 28.4 6.6E+02 0.014 25.7 13.6 109 619-727 135-258 (439)
484 PF04781 DUF627: Protein of un 28.2 3.2E+02 0.007 22.1 8.4 41 665-705 62-102 (111)
485 KOG0292 Vesicle coat complex C 27.8 79 0.0017 35.4 4.3 47 626-675 654-700 (1202)
486 PRK11639 zinc uptake transcrip 27.8 2.2E+02 0.0047 25.2 6.5 59 571-631 18-76 (169)
487 PF10475 DUF2450: Protein of u 27.5 5.1E+02 0.011 25.5 9.7 51 520-572 105-155 (291)
488 KOG4814 Uncharacterized conser 27.4 2E+02 0.0044 31.2 6.9 62 650-711 397-458 (872)
489 KOG2659 LisH motif-containing 27.4 4.8E+02 0.01 24.4 8.5 91 547-640 29-128 (228)
490 COG0735 Fur Fe2+/Zn2+ uptake r 27.3 2.5E+02 0.0055 24.1 6.6 63 364-427 8-70 (145)
491 PF11817 Foie-gras_1: Foie gra 27.3 1.7E+02 0.0036 28.0 6.2 18 588-605 187-204 (247)
492 KOG0292 Vesicle coat complex C 27.2 3.2E+02 0.007 31.0 8.5 129 556-711 655-783 (1202)
493 COG5108 RPO41 Mitochondrial DN 26.4 2.5E+02 0.0054 30.6 7.3 47 281-327 33-81 (1117)
494 PF11817 Foie-gras_1: Foie gra 26.4 1.8E+02 0.0038 27.8 6.2 22 620-641 183-204 (247)
495 COG0735 Fur Fe2+/Zn2+ uptake r 26.3 3.1E+02 0.0066 23.6 6.9 42 587-629 28-69 (145)
496 PF02847 MA3: MA3 domain; Int 26.2 1.1E+02 0.0024 24.7 4.1 92 19-111 6-113 (113)
497 PF08311 Mad3_BUB1_I: Mad3/BUB 26.1 3.9E+02 0.0084 22.3 8.3 43 562-604 81-124 (126)
498 PF10155 DUF2363: Uncharacteri 25.9 3.9E+02 0.0085 22.3 8.5 112 28-141 2-126 (126)
499 PF10255 Paf67: RNA polymerase 25.8 3E+02 0.0065 28.5 7.8 58 584-641 127-190 (404)
500 KOG2297 Predicted translation 24.9 6.7E+02 0.015 24.6 13.1 276 174-506 99-399 (412)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-101 Score=873.19 Aligned_cols=710 Identities=31% Similarity=0.542 Sum_probs=695.7
Q ss_pred CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchh---HHHHHHHHhcCCCCchhhhHH
Q 041183 43 NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENE---IVHGVCLKLGFSSRVYLVSGF 119 (760)
Q Consensus 43 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 119 (760)
.|+..++|.++.++++.|++++|+.+|++|.+.|++|+..+|..++.+|.+.+..+ .++..+.+.|..++..++|++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56777899999999999999999999999999999999999999999999888777 888999999999999999999
Q ss_pred HHHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCc---cchh
Q 041183 120 IENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDV---KEGE 196 (760)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~ 196 (760)
+..|++.|+++.|.++|+.|++||+.+||++|.+|++.|++++|+++|++|...|+.||..||++++++|... ..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 6788
Q ss_pred hHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhc---ChhHHHHHHHHHhhCCcc
Q 041183 197 QIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAAC---DGVEAFGLFKDLRFNDFQ 273 (760)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~ 273 (760)
+++..+.+.|. .++..++|.|+.+|++.|+++.|.++|++|++||.++||.+|.+++ +.++|+++|++|...|+.
T Consensus 208 ~~~~~~~~~g~--~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 208 EVHAHVVRFGF--ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHcCC--CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 89999999998 8999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 041183 274 INEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYS 353 (760)
Q Consensus 274 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 353 (760)
||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|..||..+||.+|.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 041183 354 ENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKR 433 (760)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 433 (760)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc
Q 041183 434 VLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDI 513 (760)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 513 (760)
+|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++.
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999986 59999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 041183 514 FVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAG 593 (760)
Q Consensus 514 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 593 (760)
.++++|+++|+++|++++|.++|+.+ .+|..+||+++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 594 LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKL 673 (760)
Q Consensus 594 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 673 (760)
++++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999996589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHH
Q 041183 674 LELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEH 753 (760)
Q Consensus 674 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (760)
++++|+++..|..++++|...|+|++|.++.+.|+++|++++||+||+++++.+|.|..||++||+..+||.+|.++..+
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 041183 754 MVA 756 (760)
Q Consensus 754 ~~~ 756 (760)
++.
T Consensus 764 ~~~ 766 (857)
T PLN03077 764 MKA 766 (857)
T ss_pred HHh
Confidence 875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-82 Score=716.05 Aligned_cols=608 Identities=26% Similarity=0.416 Sum_probs=587.2
Q ss_pred chhhHHhhcCCCCchhhhhHHHHhhccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCc
Q 041183 2 IYSLLIKNGHHLDPILSTTLISHFTKFADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDA 81 (760)
Q Consensus 2 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 81 (760)
+++.+.+.|..|++.++|.|+..|++.|+++.|+++|+.|++||+.+||++|.+|++.|++++|+.+|++|...|+.||.
T Consensus 108 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~ 187 (857)
T PLN03077 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187 (857)
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 56677788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhcCCCchh---HHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcC
Q 041183 82 FTFSSLVKACGSLQENE---IVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNG 158 (760)
Q Consensus 82 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 158 (760)
.||+.+|++|++.++.. +++..+.+.|+.||..++|+|+.+|+++|+++.|.++|+.|+.+|..+||++|.+|++.|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC
Confidence 99999999999988887 899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCc---cchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHH
Q 041183 159 EFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDV---KEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKM 235 (760)
Q Consensus 159 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (760)
++++|+++|++|.+.|+.||..||+.++.+|... +.+.+++..+.+.|. .++..+||.|+.+|++.|++++|.++
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~--~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF--AVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999877 778889999999998 89999999999999999999999999
Q ss_pred hccCCCCCcchHHHHHHhhc---ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCch
Q 041183 236 FDEITEPDVVSWSERIAAAC---DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVS 312 (760)
Q Consensus 236 ~~~~~~~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 312 (760)
|++|.+||..+||.+|.+++ +.++|+++|++|...|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..
T Consensus 346 f~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred HhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 99999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCC
Q 041183 313 IGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKS 392 (760)
Q Consensus 313 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 392 (760)
+|+.|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999999999999999999999999999999999999999986 599999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 393 LKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGS 472 (760)
Q Consensus 393 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 472 (760)
++.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChHhHHHH
Q 041183 473 CREVNGSTFSIVLKACAAMTDLEQGKAIHCLAL-KARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC-RDSLAGWNAM 550 (760)
Q Consensus 473 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l 550 (760)
|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +||..+|++|
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999 68999999999999999999999999999999995 8999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChh
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLE 616 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 616 (760)
+.+|..+|+.+.+....+++.+ +.|+. ..|..+...|...|+|++|.++.+.|++ .|+.+++-
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~-~g~~k~~g 727 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE-NGLTVDPG 727 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH-cCCCCCCC
Confidence 9999999999999999999888 67854 6677777899999999999999999999 78887753
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-74 Score=639.40 Aligned_cols=515 Identities=31% Similarity=0.533 Sum_probs=498.2
Q ss_pred CCcchHHHHHHhhc---ChhHHHHHHHHHhhCC-ccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHH
Q 041183 242 PDVVSWSERIAAAC---DGVEAFGLFKDLRFND-FQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNAL 317 (760)
Q Consensus 242 ~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 317 (760)
++..+|+.+|.++. +.++|+++|+.|...+ ..||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34456666666666 5666667777776654 7899999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHH
Q 041183 318 ISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAM 397 (760)
Q Consensus 318 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 397 (760)
+.+|++.|++++|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 041183 398 QVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVN 477 (760)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~ 477 (760)
+++..+.+.|+.||..++++|+.+|+++|++++|.++|++|.++|..+||.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHc
Q 041183 478 GSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQH 557 (760)
Q Consensus 478 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 557 (760)
..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.++|..+||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHH
Q 041183 558 GCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMT 637 (760)
Q Consensus 558 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (760)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.++.|+.|+..+|+.++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987689999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc
Q 041183 638 IDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPG 717 (760)
Q Consensus 638 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (760)
+++|+..|+..+|++|+.+|..+|+++.|..++++++++.|++..+|..++.+|.+.|+|++|.+++++|+++|+++.|+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 041183 718 YSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVA 756 (760)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (760)
+||+++++.+|.|..||++||+..+||.+|.++..++++
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-65 Score=562.60 Aligned_cols=530 Identities=14% Similarity=0.162 Sum_probs=465.7
Q ss_pred CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchhhhHHHHH
Q 041183 43 NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYLVSGFIEN 122 (760)
Q Consensus 43 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 122 (760)
.++...|..++..+++.|++++|+++|++|.+.|+. +++..+++.++..
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv-------------------------------~~~~v~~~~li~~ 415 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL-------------------------------DMDKIYHAKFFKA 415 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC-------------------------------CchHHHHHHHHHH
Confidence 457778999999999999999999999999887753 2333344455566
Q ss_pred HHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHH
Q 041183 123 YAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFG 202 (760)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 202 (760)
|.+.|.++.|.++|+.|..||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|
T Consensus 416 ~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~ty-------------------- 475 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY-------------------- 475 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH--------------------
Confidence 777888888888888888888889999999999999999999999999999988888888
Q ss_pred HhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCC----CCCcchHHHHHHhhc---ChhHHHHHHHHHhhCCccCC
Q 041183 203 VKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEIT----EPDVVSWSERIAAAC---DGVEAFGLFKDLRFNDFQIN 275 (760)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~~~ 275 (760)
+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|+ +.++|+++|++|...|+.||
T Consensus 476 --------------nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 476 --------------TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred --------------HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 788888888999999999998887 488889999999888 88899999999999999999
Q ss_pred cchHHHHHHhhcCCCcchHHHHHHHHHHH--HcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC----CCCCeeeHHHHH
Q 041183 276 EYTMINLLSSVGGERILRAGKQIQAFCYK--VGFMEVVSIGNALISMYGKCGQVNDARSIFDYL----IFKDSVSWNSMI 349 (760)
Q Consensus 276 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li 349 (760)
..+|+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|+.+|.+|++.|++++|.++|+.| ..|+..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999999987 678999999999999999999999999999999 456779999999
Q ss_pred HHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 041183 350 AGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALN 429 (760)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (760)
.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 041183 430 ESKRVLSEID----KKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLAL 505 (760)
Q Consensus 430 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 505 (760)
+|.++|++|. .|+..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++.+|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999995 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041183 506 KARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAV 585 (760)
Q Consensus 506 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 585 (760)
+.|+.||..+|+.++..+. +++++|..+.+.+...+. .......+..+.|+.+|++|.+.|+.||..||+.+
T Consensus 782 k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999986643 245666555433321110 01111123346799999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHH
Q 041183 586 LTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM---PIPPDAH 648 (760)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 648 (760)
+.+++..+..+.+..+++.+.. .+..|+..+|++|++++.+. .++|..++++| ++.|+..
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9888899999999999998877 68889999999999998432 46899999999 3555543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-62 Score=545.18 Aligned_cols=507 Identities=14% Similarity=0.184 Sum_probs=324.1
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHH
Q 041183 142 LDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLE-LNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIM 220 (760)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 220 (760)
++...|..++..+++.|++++|+++|++|.+.|+. ++..++ +.++
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~----------------------------------~~li 413 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYH----------------------------------AKFF 413 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHH----------------------------------HHHH
Confidence 56778999999999999999999999999999865 343344 7788
Q ss_pred HHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHH
Q 041183 221 NLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQA 300 (760)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 300 (760)
..|.+.|..++|..+|+.|..|+..+|+.+|.+++ +.|+++.|.++++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~--------------------------------k~g~~e~A~~lf~ 461 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA--------------------------------SSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH--------------------------------hCcCHHHHHHHHH
Confidence 88999999999999999988666655555555544 4455555555555
Q ss_pred HHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCC----CCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCC
Q 041183 301 FCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLI----FKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPN 376 (760)
Q Consensus 301 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 376 (760)
.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 55555555555555555555555555555555555542 34555555555555555555555555555555555555
Q ss_pred HhhHHHHHHHhcCcCCHHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC----CCcccHHHHH
Q 041183 377 GYTMASILEAVSNSKSLKQAMQVHSHIIK--SGFLLDDSMISCLITTYGKCNALNESKRVLSEIDK----KNAVHINALA 450 (760)
Q Consensus 377 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~ 450 (760)
..||+.+|.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+ ++..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 55555555555555555555555555543 34555555555555555555555555555555543 2335555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHH
Q 041183 451 SVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIE 530 (760)
Q Consensus 451 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 530 (760)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++++|.+.|+.|+..+|+.||.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 55555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcC----CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 041183 531 DAKRAFRKIC----RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMS 606 (760)
Q Consensus 531 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (760)
+|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666652 456666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhcCCCCChhHHHHHHHHhhh-----------------------cCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 041183 607 DLHGLIPQLEHYACIVDLLGR-----------------------VGLLEGAKMTIDQM---PIPPDAHIWQSLLSACTIY 660 (760)
Q Consensus 607 ~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 660 (760)
+ .|+.||..+|+.++..+.+ .+..++|..+|++| +..||..+|+.++.++++.
T Consensus 782 k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 782 E-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred H-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Confidence 5 5666666666666544221 12346788888888 3788888888888777777
Q ss_pred CChhHHHHHHHHHhcc-CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc
Q 041183 661 GNIDLGLLAGSKLLEL-QPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPG 717 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 717 (760)
++.+.+...++.+... .+++..+|..++..+.+. .++|..++++|.+.|+.++-.
T Consensus 861 ~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 861 HDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7888877777765542 344778888888876321 257888888888888877764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-63 Score=548.47 Aligned_cols=470 Identities=24% Similarity=0.366 Sum_probs=443.3
Q ss_pred CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCCCcccHHHHHHHhcCCCchh---HHHHHHHHhcCCCCchhhhHH
Q 041183 44 RDIITYNALISGLARFCQSGPALKLFDRLRYQG-LRPDAFTFSSLVKACGSLQENE---IVHGVCLKLGFSSRVYLVSGF 119 (760)
Q Consensus 44 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 119 (760)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+ +++..|.+.|+.||..+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456699999999999999999999999999864 7899999999999999999886 899999999999999999999
Q ss_pred HHHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHH
Q 041183 120 IENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIH 199 (760)
Q Consensus 120 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~ 199 (760)
+..|++.|+++.|.++|+.|++||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~----------------- 227 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF----------------- 227 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH-----------------
Confidence 999999999999999999999999999999999999999999999999999988877666665
Q ss_pred HHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchH
Q 041183 200 GFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTM 279 (760)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 279 (760)
T Consensus 228 -------------------------------------------------------------------------------- 227 (697)
T PLN03081 228 -------------------------------------------------------------------------------- 227 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCcc
Q 041183 280 INLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFN 359 (760)
Q Consensus 280 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 359 (760)
+.++.+|++.|....+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|..+|+.+||++|.+|++.|+++
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Confidence 34444555556666677777788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 041183 360 QALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEID 439 (760)
Q Consensus 360 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (760)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCchHHHH
Q 041183 440 KKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALK-ARYDQDIFVESA 518 (760)
Q Consensus 440 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 518 (760)
++|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 699999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 041183 519 VIDMYCKCGTIEDAKRAFRKIC-RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVR 596 (760)
Q Consensus 519 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~ 596 (760)
++++|++.|++++|.+++++|. .|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+..|++.|+++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHH
Confidence 9999999999999999999996 78999999999999999999999999999976 6675 579999999999999999
Q ss_pred HHHHHHHHhhhhcCCCC
Q 041183 597 EARTYLSCMSDLHGLIP 613 (760)
Q Consensus 597 ~A~~~~~~~~~~~~~~~ 613 (760)
+|.++++.|.+ .|+..
T Consensus 546 ~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 546 EAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHHHHHHHHH-cCCcc
Confidence 99999999998 67754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-36 Score=356.55 Aligned_cols=706 Identities=13% Similarity=0.029 Sum_probs=483.7
Q ss_pred chhhhhHHHHhhccCChhHHHHhhhcCC---CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 041183 15 PILSTTLISHFTKFADFRRAFRFLFDTQ---NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKAC 91 (760)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 91 (760)
...+..+...+.+.|++++|.+.|+... +.+...+..+...+...|++++|..+++++.+.+ +++...+..+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLL 203 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3455566666666677777777666543 2334456666666666666666666666665542 23334444444555
Q ss_pred cCCCchhHHHHHHHHh--cCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC--C-CceeHHHHHHHHHhcCChhHHHHH
Q 041183 92 GSLQENEIVHGVCLKL--GFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD--L-DNVAYTAMVCGYVWNGEFDKSKEV 166 (760)
Q Consensus 92 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 166 (760)
...|+.++......+. ..+.+..++..++..+...|+++.|...++.+.. | +...+......+...|++++|...
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555332222221 1233445555556666666666666666655433 1 111222222233344555555555
Q ss_pred HHHHHHCCCC--------------------------------CC-hhhHHHHHHhccCccchhhHHHHHHhhccCCCcch
Q 041183 167 FVEMRSLGLE--------------------------------LN-EFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCN 213 (760)
Q Consensus 167 ~~~m~~~g~~--------------------------------p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (760)
|+++.+.+.. |+ ...+..+...+...+..........+.....+.+.
T Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 363 (899)
T TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363 (899)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 5554443311 11 11222222222222111111111111111224455
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC--CCc-chHHHHHHhhc---ChhHHHHHHHHHhhCCccCCcchHHHHHHhhc
Q 041183 214 HLNNAIMNLYVRCGQKLDAVKMFDEITE--PDV-VSWSERIAAAC---DGVEAFGLFKDLRFNDFQINEYTMINLLSSVG 287 (760)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 287 (760)
..++.+...+.+.|++++|.+.|+++.+ |+. ..+..+...+. +.++|...++......... ......++..+.
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHH
Confidence 6666777777777777777777766543 222 22222222222 6667777777766544222 223444556667
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCC---CCCeeeHHHHHHHHHhcCCccHHHHH
Q 041183 288 GERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLI---FKDSVSWNSMIAGYSENGFFNQALDM 364 (760)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~ 364 (760)
+.|+.+.|..+++.+.+. .+++..++..+...+...|++++|...|+++. ..+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777888888877777653 34566778888888888888888888888763 23455667777888888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---C
Q 041183 365 FCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDK---K 441 (760)
Q Consensus 365 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 441 (760)
++++...+ +.+..++..+...+...|+.++|...++.+...+ +.+...+..+...|.+.|++++|..+++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 88887753 3356677778888888888888888888887664 33556777788888888999998888888764 3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 041183 442 NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVID 521 (760)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 521 (760)
++..|..+..++...|++++|...|+++.+.. +.+...+..+..++...|+++.|..+++++.+.. +.+...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 55678888888889999999999998887654 3355667788888888899999999998888765 355778888888
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 041183 522 MYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREA 598 (760)
Q Consensus 522 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 598 (760)
.+...|++++|..+++.+. ..+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 8999999999999988875 335567888888899999999999999998884 56667777888889999999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 599 RTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
.+.++.+.+ ..+.+...+..++..|...|++++|.+.|+++. .++++.+++.+...+...|+ ++|+..+++++++
T Consensus 756 ~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999887 355677888899999999999999999999882 56678889999999999999 8899999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 041183 677 QPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVA 756 (760)
Q Consensus 677 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (760)
.|+++..+..++.++...|++++|..+++++.+. .|...+++..++..|.+.|+
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------------------------APEAAAIRYHLALALLATGR 886 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------CCCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999876 35566788888888887776
Q ss_pred hh
Q 041183 757 TA 758 (760)
Q Consensus 757 ~~ 758 (760)
.+
T Consensus 887 ~~ 888 (899)
T TIGR02917 887 KA 888 (899)
T ss_pred HH
Confidence 54
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.2e-36 Score=349.09 Aligned_cols=681 Identities=12% Similarity=-0.004 Sum_probs=387.3
Q ss_pred hhhhhHHHHhhccCChhHHHHhhhcCCC----CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 041183 16 ILSTTLISHFTKFADFRRAFRFLFDTQN----RDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKAC 91 (760)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 91 (760)
.....+...+...|++++|.+.+..... .....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 169 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLA 169 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHH
Confidence 3444455555555555555555554431 123355666667777778888888887776643 22334566666666
Q ss_pred cCCCchhHHHHHHHHh--cCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC---CCceeHHHHHHHHHhcCChhHHHHH
Q 041183 92 GSLQENEIVHGVCLKL--GFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD---LDNVAYTAMVCGYVWNGEFDKSKEV 166 (760)
Q Consensus 92 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 166 (760)
...|+.++....+.+. ..+++...+..+...+...|+++.|...|+.... .+...+..++..+...|++++|...
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 249 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKH 249 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6777776444443332 2344566777777777788888888888876643 3445677777777888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHhcc--CccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCC--C
Q 041183 167 FVEMRSLGLELNEFSLTAVLGASF--DVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITE--P 242 (760)
Q Consensus 167 ~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 242 (760)
++.+.+.........+......+. ....+........+.. +.....+..+...+...|+++.|...+++..+ |
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 326 (899)
T TIGR02917 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA---PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326 (899)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888776653322221111111110 1122222222222222 22222333444455566666666666665543 2
Q ss_pred Cc-chHHHHHHhhc---ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHH
Q 041183 243 DV-VSWSERIAAAC---DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALI 318 (760)
Q Consensus 243 ~~-~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 318 (760)
+. ..+..+...+. +.++|...++.+.... +.+...+..+...+.+.|+.+.|...++.+.+.. +.+...+..+.
T Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 404 (899)
T TIGR02917 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLG 404 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 21 22222222222 6666666666655433 2234455555666666666666666666665543 22344555555
Q ss_pred HhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHH
Q 041183 319 SMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQ 395 (760)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 395 (760)
..+...|++++|.+.++.+... ....+..++..+.+.|++++|..+++.+... .+++..++..+...+...|++++
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH
Confidence 5666666666666666655221 2234445555666666666666666666553 23345556666666666666666
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 396 AMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK---NAVHINALASVLVYASCHAEALELYRTIWGS 472 (760)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 472 (760)
|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+. +..++..+...+.+.|+.++|...++++...
T Consensus 484 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666665543 223445555666666666666666666665432 3445555666666666666666666666554
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHH
Q 041183 473 CREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNA 549 (760)
Q Consensus 473 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 549 (760)
+ +.+...+..+...+...|+++.|..+++.+.+.. +.+...|..+..++...|++++|...|+.+. +.+...+..
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3 2233445555666666666666666666665543 3445566666666666666666666666553 224445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV 628 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 628 (760)
+..++.+.|++++|...|+++.+ ..| +..++..+...+...|++++|.++++.+.+ ..+.+...+..++..+.+.
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCChHHHHHHHHHHHHC
Confidence 66666666666666666666665 334 345555566666666666666666666655 2334455555666666666
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 629 GLLEGAKMTIDQM-PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 629 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
|++++|.+.++.+ ...|+..++..++..+...|++++|.+.++++++..|+++.++..++.+|...|++++|..+|+++
T Consensus 717 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 6666666666655 234444555556666666666666666666666666666666666666666666666666666666
Q ss_pred HhC
Q 041183 708 KEK 710 (760)
Q Consensus 708 ~~~ 710 (760)
.+.
T Consensus 797 ~~~ 799 (899)
T TIGR02917 797 VKK 799 (899)
T ss_pred HHh
Confidence 554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=7.5e-25 Score=255.36 Aligned_cols=629 Identities=11% Similarity=0.012 Sum_probs=458.3
Q ss_pred hhhHHHHhhccCChhHHHHhhhcCC---CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCC
Q 041183 18 STTLISHFTKFADFRRAFRFLFDTQ---NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSL 94 (760)
Q Consensus 18 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 94 (760)
.-..++.+...++.+.|.+.++++. +.+...+..++..+.+.|+.++|...++++.+.. |+...+..+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~--- 105 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTM--- 105 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHH---
Confidence 3445667778999999999998864 4467788999999999999999999999998863 6554443322111
Q ss_pred CchhHHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCCCCceeHH----HHHHHHHhcCChhHHHHHHHHH
Q 041183 95 QENEIVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLDLDNVAYT----AMVCGYVWNGEFDKSKEVFVEM 170 (760)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m 170 (760)
.-..|+....-.+...+.+.|++++|.+.|+.....+..... .........|+.++|++.|+++
T Consensus 106 ------------~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 106 ------------LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred ------------HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 012344444455566788899999999999987653222111 1111122458999999999999
Q ss_pred HHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCc------
Q 041183 171 RSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDV------ 244 (760)
Q Consensus 171 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------ 244 (760)
.+.. +.+..++..+...+...|+.++|+..++++.+...
T Consensus 174 l~~~-----------------------------------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 174 NADY-----------------------------------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred HHhC-----------------------------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 8775 33444457778888888999999999888754211
Q ss_pred chHHH-----------------HHHhhc---ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHH
Q 041183 245 VSWSE-----------------RIAAAC---DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYK 304 (760)
Q Consensus 245 ~~~~~-----------------ll~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 304 (760)
..|.. .+..+- ....+...+.........|+... ...-..+...|++++|...++..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01111 111111 12234444444433322232221 1223455678999999999999987
Q ss_pred HcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCC--CCe---eeHH------------HHHHHHHhcCCccHHHHHHHH
Q 041183 305 VGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIF--KDS---VSWN------------SMIAGYSENGFFNQALDMFCH 367 (760)
Q Consensus 305 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li~~~~~~g~~~~a~~~~~~ 367 (760)
.. +.+..++..+..++.+.|++++|+..|++... |+. ..|. .....+.+.|++++|...|++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 64 33677888999999999999999999998743 221 1122 123467789999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCC-----
Q 041183 368 MLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKN----- 442 (760)
Q Consensus 368 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 442 (760)
..+.. +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...|. .++.++|..+++.+....
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 99863 23556677788999999999999999999987643 34556667777774 467899999998776432
Q ss_pred -------cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchH
Q 041183 443 -------AVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFV 515 (760)
Q Consensus 443 -------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 515 (760)
...+..+...+...|++++|++.|++..+..+. +...+..+...+...|++++|...++++.+.. +.++..
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 223455677888999999999999999886422 44567778889999999999999999998755 345555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC----ChH---------hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKICRD----SLA---------GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITY 582 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 582 (760)
+..+...+...++.++|...++.+... +.. .+..+...+...|+.++|.++++. .+++...+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~ 606 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID 606 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence 556666778899999999999988532 111 123456778899999999999872 23355667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhc
Q 041183 583 LAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IP-PDAHIWQSLLSACTIY 660 (760)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~ 660 (760)
..+...+.+.|++++|+..|+.+.+ ..+.+...+..++.+|...|++++|.+.++... .. .+..++..+..++...
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 7788899999999999999999998 234467889999999999999999999999874 33 4566778888889999
Q ss_pred CChhHHHHHHHHHhccCCCCc------hhHHHHHHHHHhcCChhHHHHHHHHHHh-CCC
Q 041183 661 GNIDLGLLAGSKLLELQPDNE------STYVLLSNLYASAGMWNDVGKLRKEMKE-KFL 712 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 712 (760)
|++++|.+.+++++...|+++ ..+..++.++...|++++|+..+++... .|+
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999876544 4677789999999999999999999754 344
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=5e-24 Score=248.48 Aligned_cols=610 Identities=12% Similarity=0.079 Sum_probs=426.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchhhhHHHHHHHhcCChhh
Q 041183 52 LISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVS 131 (760)
Q Consensus 52 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 131 (760)
.++.+...++.+.|.+.++++... .|+ ++.++..++..+.+.|+.++
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~--~p~-------------------------------~p~~~~~~~~~~l~~g~~~~ 80 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELI--DPN-------------------------------NPDVIAARFRLLLRQGDSDG 80 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHcc--CCC-------------------------------CHHHHHHHHHHHHhCCCHHH
Confidence 445566667777777777776642 222 34444555666778888888
Q ss_pred HHHHhhhcCC--CCceeH-----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCc
Q 041183 132 AEMCFRDCLD--LDNVAY-----------------TAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDV 192 (760)
Q Consensus 132 A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 192 (760)
|.+.++...+ |+...+ -.+...+...|++++|++.|+.+.+.+. |+ .....
T Consensus 81 A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~-~~la~-------- 150 (1157)
T PRK11447 81 AQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PE-LDLAV-------- 150 (1157)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CC-hHHHH--------
Confidence 8888887755 333221 2234467889999999999999986642 22 11100
Q ss_pred cchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCC--CCcchHHHHHHh-hc---ChhHHHHHHHH
Q 041183 193 KEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITE--PDVVSWSERIAA-AC---DGVEAFGLFKD 266 (760)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~-~~---~~~~a~~~~~~ 266 (760)
.-........|+.++|.+.++++.+ |+.......+.. +. +.++|+..+++
T Consensus 151 ------------------------~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~ 206 (1157)
T PRK11447 151 ------------------------EYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQ 206 (1157)
T ss_pred ------------------------HHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 0111112245899999999998876 544332222222 22 88899999999
Q ss_pred HhhCCcc----------------CCcc---hHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCCh
Q 041183 267 LRFNDFQ----------------INEY---TMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQV 327 (760)
Q Consensus 267 m~~~~~~----------------~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 327 (760)
+...... ++.. .+...+..+........+...+....+....|+.. .......+...|++
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~ 285 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQG 285 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCH
Confidence 8653211 0000 11222222223333444555555444333333322 12345567789999
Q ss_pred HHHHHHHhcCCC--C-CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHhhH------------HHHHHHhcCcC
Q 041183 328 NDARSIFDYLIF--K-DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIP-NGYTM------------ASILEAVSNSK 391 (760)
Q Consensus 328 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~~~~ 391 (760)
++|+..|++... | +...+..+...+.+.|++++|+..|++..+..... ....+ ......+.+.|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 999999998733 3 66788899999999999999999999988753221 11111 12234567899
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHHH
Q 041183 392 SLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK---NAVHINALASVLVYASCHAEALELYRT 468 (760)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 468 (760)
++++|...++++.+... .+...+..+..++...|++++|++.|++..+. +...+..+...|. .++.++|+..++.
T Consensus 366 ~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~ 443 (1157)
T PRK11447 366 NLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIAS 443 (1157)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHh
Confidence 99999999999998753 35667778899999999999999999998753 3445556666664 4678999998877
Q ss_pred HHhCCCC--------CChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 041183 469 IWGSCRE--------VNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC 540 (760)
Q Consensus 469 m~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 540 (760)
+...... .....+..+...+...|++++|.+.+++..+.. +.++..+..+...|.+.|++++|...++++.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6432110 011234556677888999999999999999876 3467788889999999999999999999873
Q ss_pred ---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 041183 541 ---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEI---------TYLAVLTSCCHAGLVREARTYLSCMSDL 608 (760)
Q Consensus 541 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (760)
+.+...+..+...+...++.++|+..++++......++.. .+..+...+...|+.++|.++++ .
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h-
Confidence 3355556666667788999999999998875533333321 12344567889999999999887 2
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 609 HGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 609 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
.+.+...+..+...+.+.|++++|++.|+++. .+.++..+..++..+...|++++|++.++++.+..|+++.++..
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 34566677889999999999999999999883 45568899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 687 LSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 687 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
++.++...|++++|..+++++.+......+ ......++..++++|.+.|+++
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~~~--------------------~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQPP--------------------SMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccCCc--------------------chhhHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998765321111 1123466777778887766654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2.8e-22 Score=222.28 Aligned_cols=622 Identities=11% Similarity=-0.004 Sum_probs=386.4
Q ss_pred hhccCChhHHHHhhhcCC---CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHH
Q 041183 25 FTKFADFRRAFRFLFDTQ---NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVH 101 (760)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 101 (760)
+...|++++|+..|+... +.+..++..+...|.+.|+.++|...+++..+. .|+...|..++..+.+..+...++
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i~~~~kA~~~y 131 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAIPVEVKSVTTV 131 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHhccChhHHHHH
Confidence 345599999999999864 345668899999999999999999999999875 566666666666664444444666
Q ss_pred HHHHHhcCCCCchhhhHHHHH--------HHhcCChhhHHHHhhhcCCCC--ceeHHH-HHHHHHhcCChhHHHHHHHHH
Q 041183 102 GVCLKLGFSSRVYLVSGFIEN--------YAKSGEIVSAEMCFRDCLDLD--NVAYTA-MVCGYVWNGEFDKSKEVFVEM 170 (760)
Q Consensus 102 ~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m 170 (760)
+.+.+. .+-+..++..+... |.+.+....+++ .....++ ...... +...|.+.|++++|++++.++
T Consensus 132 e~l~~~-~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQ-QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHh-CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 666554 23334555555554 777777777776 3333343 333344 488999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHhccC-ccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHH
Q 041183 171 RSLGLELNEFSLTAVLGASFD-VKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSE 249 (760)
Q Consensus 171 ~~~g~~p~~~t~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 249 (760)
.+.++.. ..-...+-.++.. .+. +.+... .+... ..++.++..+...|.+.|+.+.|..++.+++.-+..
T Consensus 209 ~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al-~~~~l--k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~---- 279 (987)
T PRK09782 209 RQQNTLS-AAERRQWFDVLLAGQLD-DRLLAL-QSQGI--FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT---- 279 (987)
T ss_pred HhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHH-hchhc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC----
Confidence 9987433 2222222223332 122 223322 22222 467777888888888888888888888877641110
Q ss_pred HHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcch-HHHHHHHHHHHHcCCCCc-hhHhHHHHhhhcCCCh
Q 041183 250 RIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILR-AGKQIQAFCYKVGFMEVV-SIGNALISMYGKCGQV 327 (760)
Q Consensus 250 ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~ 327 (760)
.|+..++.-++. +.+... .+..-+.. ...++. ...-.++..+.+.+++
T Consensus 280 -----------------------~~~~~~~~~~l~---r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 280 -----------------------DAQEKSWLYLLS---KYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred -----------------------CCccHHHHHHHH---hccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHH
Confidence 122222222211 111111 00000000 000000 1112346777788888
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHH--hcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHH
Q 041183 328 NDARSIFDYLIFKDSVSWNSMIAGYS--ENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIK 405 (760)
Q Consensus 328 ~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 405 (760)
+.+.++.. ....+. . ..+.... ..+...++...+..|... .+-+.....-+.-.....|+.++|.++++....
T Consensus 330 ~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 330 DAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred HHHHHHhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 87777744 222222 1 2332222 335666777777777664 122444444455556778889999999988876
Q ss_pred h--CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCC--Ch
Q 041183 406 S--GFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAE---ALELYRTIWGSCREV--NG 478 (760)
Q Consensus 406 ~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~m~~~~~~~--~~ 478 (760)
. +..++......++..|.+.+.+....+...-....+...- +.-.|+..+ +...+....... ++ +.
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~ 477 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM-SPSYDA 477 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHHhcccC-CCCCCH
Confidence 2 2233555666888888888874444444333221111111 222333333 333333333221 22 44
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHhHHHHHHHHHH
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC--RDSLAGWNAMMMGYAQ 556 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~ 556 (760)
..|..+..++.. ++.+.|...+....... |+......+...+...|++++|...|+++. .++...+..+...+.+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~ 554 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 555656555554 77777888777776654 444443344555567888888888887664 2444456666777788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHH
Q 041183 557 HGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAK 635 (760)
Q Consensus 557 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 635 (760)
.|+.++|...+++..+. .|+. ..+..+...+...|++++|...+++..+ ..|+...+..+..++.+.|++++|.
T Consensus 555 ~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 555 AGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred CCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888774 3543 3333344455566888888888888876 5567777888888888888888888
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 636 MTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 636 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..+++.- .+.+...+..+..++...|++++|+..+++++++.|+++.++..++.++...|++++|+..+++..+.
T Consensus 630 ~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 630 SDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888772 34456677777778888888888888888888888888888888888888888888888888887755
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=7e-21 Score=211.30 Aligned_cols=631 Identities=10% Similarity=-0.009 Sum_probs=380.3
Q ss_pred CchhhhhHHHHhhccCChhHHHHhhhcCC--CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcc-cHHHHHHH
Q 041183 14 DPILSTTLISHFTKFADFRRAFRFLFDTQ--NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAF-TFSSLVKA 90 (760)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~ 90 (760)
++.++..|...|.+.|++++|+..+++.. .|+-..|..++..+ ++.++|..+++++.+. .|+.. .+..+...
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~ 151 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCRS 151 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHHH
Confidence 34588899999999999999999999875 45434454444444 8999999999999886 35543 44444443
Q ss_pred --------hcCCCchhHHHHHHHHhcCCCCchhhhHH-HHHHHhcCChhhHHHHhhhcCCC---CceeHHHHHHHHHh-c
Q 041183 91 --------CGSLQENEIVHGVCLKLGFSSRVYLVSGF-IENYAKSGEIVSAEMCFRDCLDL---DNVAYTAMVCGYVW-N 157 (760)
Q Consensus 91 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-~ 157 (760)
+.+.+.....++ .......|...+.... .+.|.+.|+++.|++.+..+.+. +..-...|...|.. .
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred hhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Confidence 666666666666 4444444455555555 89999999999999999988763 33345566667777 3
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCC--cchhHHHHHHHHhHhcCCHH-HHHH
Q 041183 158 GEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSG--VCNHLNNAIMNLYVRCGQKL-DAVK 234 (760)
Q Consensus 158 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~-~A~~ 234 (760)
++ +++..+++. .++-+......+...+...+........+.+...-.. +.. ...+..+.+.+... .|..
T Consensus 231 ~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~---~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 231 LD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE---KSWLYLLSKYSANPVQALA 302 (987)
T ss_pred CH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc---HHHHHHHHhccCchhhhcc
Confidence 66 777777543 3335666666777766666555555555444332111 111 22333344444332 1111
Q ss_pred HhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhH
Q 041183 235 MFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIG 314 (760)
Q Consensus 235 ~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 314 (760)
-|.+ + ....+.. .....+..+.+.+++..+.++. ...|.....
T Consensus 303 ~~~~--~----~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 345 (987)
T PRK09782 303 NYTV--Q----FADNRQY-------------------------VVGATLPVLLKEGQYDAAQKLL------ATLPANEML 345 (987)
T ss_pred chhh--h----hHHHHHH-------------------------HHHHHHHHHHhccHHHHHHHHh------cCCCcchHH
Confidence 1111 0 0000000 0111123333444444333331 122222221
Q ss_pred hHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHHHHHHHHC-C-CCCCHhhHHHHHHHhcC
Q 041183 315 NALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDMFCHMLEF-S-LIPNGYTMASILEAVSN 389 (760)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~ 389 (760)
..-..+....+...++...+..|... +......+.-..+..|+.++|..+|+..... + -.++.....-++..+.+
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 11111111224444444444444222 3333333333345667777777777766552 1 12233333455666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---C--CcccHHHHHHHHHhcCChhHHHH
Q 041183 390 SKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDK---K--NAVHINALASVLVYASCHAEALE 464 (760)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~ 464 (760)
.+.+....++..-. -+++...-..+.. +.-....+...+..... . +...|..+..++.. ++.++|+.
T Consensus 426 ~~~~~~~~~~~~l~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 426 HPYLATPAKVAILS----KPLPLAEQRQWQS---QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred CCcccchHHHHHhc----cccccchhHHHHh---hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 65533322222111 1111111111111 00011112222222221 1 44556666666665 67777888
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 041183 465 LYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSL 544 (760)
Q Consensus 465 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 544 (760)
.+.+.... .|+......+...+...|+++.|...++++... +|+...+..+...+.+.|++++|...++.....++
T Consensus 498 a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P 573 (987)
T PRK09782 498 AWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL 573 (987)
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77766654 355444334444556788888888888876554 34445566667778888888888888887754332
Q ss_pred H---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 041183 545 A---GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI 621 (760)
Q Consensus 545 ~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 621 (760)
. .+..+...+...|++++|...+++..+ ..|+...+..+..++.+.|++++|...++.+.. ..+.+...+..+
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nL 649 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAAL 649 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 2 222333344455999999999999988 678888888888899999999999999999987 233356788888
Q ss_pred HHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 622 VDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
..++...|++++|++.+++. . .+.++..+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence 88999999999999999887 2 345677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 041183 700 VGKLRKEMKEKF 711 (760)
Q Consensus 700 A~~~~~~~~~~~ 711 (760)
|.+.+++...-.
T Consensus 730 a~~~~~r~~~~~ 741 (987)
T PRK09782 730 LHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHhhcC
Confidence 998888765433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-19 Score=177.70 Aligned_cols=380 Identities=17% Similarity=0.124 Sum_probs=320.5
Q ss_pred CCchhHhHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHH-HH
Q 041183 309 EVVSIGNALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMAS-IL 384 (760)
Q Consensus 309 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll 384 (760)
.-..+|..+.+.+-..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLG 191 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchh
Confidence 34567888888899999999999999988443 567899999999999999999999999887 4676655433 33
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCChhH
Q 041183 385 EAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNA---VHINALASVLVYASCHAE 461 (760)
Q Consensus 385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 461 (760)
..+-..|++++|..-|.+.++... --...|+.|...+...|+...|+..|++..+-++ ..|-.|...|...+.+++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 344457889999888887776532 1346778888899999999999999999887554 467788889999999999
Q ss_pred HHHHHHHHHhCCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 041183 462 ALELYRTIWGSCREVN-GSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC 540 (760)
Q Consensus 462 A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 540 (760)
|+..+.+.... .|+ ...+..+...|...|.++.|+..+++.++.. +.-+..|+.|..++-..|+..+|...+.+..
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999887664 454 3467777777889999999999999999865 2347899999999999999999999998764
Q ss_pred ---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC-h
Q 041183 541 ---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ-L 615 (760)
Q Consensus 541 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~ 615 (760)
.....+.+.|...+...|.+++|..+|....+ +.|.. ...+.|...|..+|++++|+..|+++.+ +.|+ .
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHH
Confidence 44556889999999999999999999999998 78875 6788899999999999999999999987 8887 5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
..|+.+...|-..|+.+.|.+.+.++ .+.|. ...++.|...+...|+..+|++.|+.++.+.|+.+.++-.++.++.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 88999999999999999999999988 45565 56889999999999999999999999999999999999999988877
Q ss_pred cCChhH
Q 041183 694 AGMWND 699 (760)
Q Consensus 694 ~g~~~~ 699 (760)
..+|.+
T Consensus 503 vcdw~D 508 (966)
T KOG4626|consen 503 VCDWTD 508 (966)
T ss_pred Hhcccc
Confidence 777765
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.1e-17 Score=173.29 Aligned_cols=660 Identities=12% Similarity=0.017 Sum_probs=431.0
Q ss_pred chhhhhHHHHhhccCChhHHHHhhhcCC--------CCCcc---hHHHHHHHHHhcC-----------CcchHHHHHHHH
Q 041183 15 PILSTTLISHFTKFADFRRAFRFLFDTQ--------NRDII---TYNALISGLARFC-----------QSGPALKLFDRL 72 (760)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~---~~~~ll~~~~~~~-----------~~~~A~~~~~~m 72 (760)
..+|-.....|.+.|+.++.+.+++... .++.. .++.+-..++..+ ....|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 4578888999999999999999998765 22211 2233333332222 122344455544
Q ss_pred HhCCCCCCcc-cHHHHHHHhcCCCc--hhHHHHHHHHhc--CCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC--CCc-
Q 041183 73 RYQGLRPDAF-TFSSLVKACGSLQE--NEIVHGVCLKLG--FSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD--LDN- 144 (760)
Q Consensus 73 ~~~~~~p~~~-~~~~ll~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~- 144 (760)
..-....+.+ .+.... |-..++ .+.......-.. .++++-..-.-.......|++..|+.+|..... |..
T Consensus 121 ~ki~m~~~~~l~~~~~~--~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGF--LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcchhhhhhhh--hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 3321111111 111111 011111 222222222111 233333333333344467899999999987432 211
Q ss_pred -eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhcc-Cc---cchhhHHHHHHhhccCCCcchhHHHHH
Q 041183 145 -VAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASF-DV---KEGEQIHGFGVKVGFLSGVCNHLNNAI 219 (760)
Q Consensus 145 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (760)
...-.+...+.+.|+.+.|+..|....+.+ |+.+.-...|..+. .. .........+.+.-...+.+|.+.+.|
T Consensus 199 aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 199 ADVRIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred CCccchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 122233455678999999999999998876 42222111111111 00 111112222222222335666777777
Q ss_pred HHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHH
Q 041183 220 MNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQ 299 (760)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 299 (760)
...|.-.|+...++.+...+..... + -..-...|-.+-+++-..|+++.|...|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~---~-----------------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTE---N-----------------------KSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhh---h-----------------------hHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 7777777777777666554432110 0 0011224556777788889999999998
Q ss_pred HHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcC----CccHHHHHHHHHHHCC
Q 041183 300 AFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENG----FFNQALDMFCHMLEFS 372 (760)
Q Consensus 300 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~ 372 (760)
-...+.........+--|..++.+.|+++.+...|+.+... +..+...|...|...+ ..+.|..++.+..+.
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~- 409 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ- 409 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-
Confidence 77665443322334456788899999999999999988333 4555666666666664 356677777666654
Q ss_pred CCCCHhhHHHHHHHhcCcCCHHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-------
Q 041183 373 LIPNGYTMASILEAVSNSKSLKQAMQVHSHI----IKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK------- 441 (760)
Q Consensus 373 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 441 (760)
.+-|...|..+...+... +...++.+|..+ ...+..+.+...|.+...+...|++..|...|+.....
T Consensus 410 ~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 233566676666665544 444446666554 35566688999999999999999999999999876532
Q ss_pred Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCch
Q 041183 442 NAV------HINALASVLVYASCHAEALELYRTIWGSCREVNGS-TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIF 514 (760)
Q Consensus 442 ~~~------~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 514 (760)
+.. +-..+...+-..++++.|.+.|..+... .|.-+ .|..+.......++...|...++.+.... ..++.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 221 1223445556678999999999999876 34433 45555534445578889999999998865 46777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHhHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCC
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKIC-----RDSLAGWNAMMMGYAQ------------HGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~g~~p 577 (760)
.++.+.+.+.+...+..|..-|..+. .+|+.+.-.|...|.+ .+..++|+++|.+... ..|
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dp 643 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDP 643 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCc
Confidence 88888889999999999988776653 3455555555554443 3467889999999988 566
Q ss_pred -CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHHH
Q 041183 578 -DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP----IPPDAHIWQS 652 (760)
Q Consensus 578 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ 652 (760)
|...-+.+.-.++..|++..|..+|..+.+ ...-...+|-.+.++|..+|++-.|++.|+..- .+.++.....
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrE--a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVRE--ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHH--HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 667778888889999999999999999998 233455678899999999999999999999772 4567888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc-------------------CChhHHHHHHHHHHhCCCC
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA-------------------GMWNDVGKLRKEMKEKFLC 713 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 713 (760)
|..++...|.+.+|.+.+..+..+.|.|+...+.++.+..+. +..+.|.++|+.|.+.+-+
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999888776654 4567888999998876543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=3.2e-18 Score=187.68 Aligned_cols=390 Identities=11% Similarity=0.024 Sum_probs=292.4
Q ss_pred hHhHHHHhhhcCCChHHHHHHHhcC--CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcC
Q 041183 313 IGNALISMYGKCGQVNDARSIFDYL--IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIP-NGYTMASILEAVSN 389 (760)
Q Consensus 313 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 389 (760)
.+......+.+.|++++|+..|++. ..|+...|..+..+|.+.|++++|++.++...+. .| +...+..+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3556777888999999999999987 4456778888999999999999999999998875 44 45678888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC----------------------------
Q 041183 390 SKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK---------------------------- 441 (760)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------- 441 (760)
.|++++|...+..+...+...+.. ...++..+........+...++.-...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999999887765543222222 222222211111122222222221110
Q ss_pred -Cc---ccHHHHHHHH---HhcCChhHHHHHHHHHHhCC-CCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 041183 442 -NA---VHINALASVL---VYASCHAEALELYRTIWGSC-REV-NGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQD 512 (760)
Q Consensus 442 -~~---~~~~~l~~~~---~~~~~~~~A~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 512 (760)
+. ..+..+...+ ...+.+++|++.|++..+.+ ..| ....+..+...+...|+++.|...+++..+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 0011111111 12367889999999998765 233 33467777778889999999999999999865 234
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 041183 513 IFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTS 588 (760)
Q Consensus 513 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~ 588 (760)
...|..+...+...|++++|...|+... +.+...|..+...+...|++++|+..|++..+ +.|+ ...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHH
Confidence 6688889999999999999999999774 44567899999999999999999999999998 5674 5667778888
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHh
Q 041183 589 CCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDA-H-------IWQSLLSACTI 659 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~ 659 (760)
+.+.|++++|+..|+.+.+ ..+.+...+..+..++...|++++|++.|++. ...|+. . .++..+..+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999987 34445788999999999999999999999986 333321 1 11222223344
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 660 YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 660 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.|++++|..+++++++++|++..++..++.++.+.|++++|+.+|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999998654
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-19 Score=175.39 Aligned_cols=419 Identities=13% Similarity=0.121 Sum_probs=336.4
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhc
Q 041183 279 MINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIF---KDSVSWNSMIAGYSEN 355 (760)
Q Consensus 279 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 355 (760)
...+..-.-+.|++++|++.....-+.... +....-.+-..+....+.+....--....+ .-..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 344555566788888888776655443321 112222233344455555554433322222 2456889999999999
Q ss_pred CCccHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChHHHHH
Q 041183 356 GFFNQALDMFCHMLEFSLIP-NGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDS-MISCLITTYGKCNALNESKR 433 (760)
Q Consensus 356 g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~ 433 (760)
|++++|+..++.+.+. .| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+.......|++.+|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999985 55 4667999999999999999999999888765 34433 33445566667899999999
Q ss_pred HHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 041183 434 VLSEIDKK---NAVHINALASVLVYASCHAEALELYRTIWGSCREVN-GSTFSIVLKACAAMTDLEQGKAIHCLALKARY 509 (760)
Q Consensus 434 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 509 (760)
.+.+..+. =.+.|+.|...+..+|+...|+..|++.... .|+ ...|..|-..+...+.++.|...+.+.....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 88877653 3568999999999999999999999999764 333 3478888889999999999999998888754
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCh-HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 041183 510 DQDIFVESAVIDMYCKCGTIEDAKRAFRKIC--RDSL-AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAV 585 (760)
Q Consensus 510 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 585 (760)
+....++..+.-.|...|.++-|...+++.. .|+. ..|+.|..++-..|+..+|...|.+... +.|+. ...+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHH
Confidence 3457788888888999999999999999875 4443 4899999999999999999999999988 56754 678889
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 041183 586 LTSCCHAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD-AHIWQSLLSACTIYGN 662 (760)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 662 (760)
...+...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|+.-+++. .+.|+ ...++.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 9999999999999999999987 6666 577899999999999999999999988 57776 5689999999999999
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 663 IDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
...|++.+.+++..+|--+.++..|+.+|...|+..+|+.-++...+-
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999988754
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=4.9e-19 Score=184.59 Aligned_cols=295 Identities=11% Similarity=0.037 Sum_probs=205.8
Q ss_pred HhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHHHHHhccCCHHH
Q 041183 423 GKCNALNESKRVLSEIDKK---NAVHINALASVLVYASCHAEALELYRTIWGSCREVN---GSTFSIVLKACAAMTDLEQ 496 (760)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~ 496 (760)
...|++++|...|.++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444555555555544432 222344455555555555555555555554322111 1345555666666666666
Q ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hHhHHHHHHHHHHcCCHHHHHHHHH
Q 041183 497 GKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDS--------LAGWNAMMMGYAQHGCYHEVSNLFN 568 (760)
Q Consensus 497 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~ 568 (760)
|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+...+ ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666543 2445666667777777777777777776663211 1134567777888899999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 041183 569 KMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ--LEHYACIVDLLGRVGLLEGAKMTIDQM-PIP 644 (760)
Q Consensus 569 ~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 644 (760)
++.+. .|+ ...+..+...+.+.|++++|.++++++.+ ..|+ ..++..++.+|.+.|++++|...++++ ...
T Consensus 205 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 205 KALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 98874 454 45677778889999999999999999987 2333 456788899999999999999999987 356
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCCceeEE
Q 041183 645 PDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS---AGMWNDVGKLRKEMKEKFLCKEPGYSWI 721 (760)
Q Consensus 645 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 721 (760)
|+...+..++..+.+.|++++|...++++++..|++. .+..+...+.. .|+.++|...+++|.+++++++|.+...
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~ 358 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCR 358 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECC
Confidence 7777778889999999999999999999999999655 55555555443 5699999999999999999999986554
Q ss_pred EEC
Q 041183 722 HVG 724 (760)
Q Consensus 722 ~~~ 724 (760)
.++
T Consensus 359 ~cg 361 (389)
T PRK11788 359 NCG 361 (389)
T ss_pred CCC
Confidence 444
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.4e-15 Score=157.96 Aligned_cols=638 Identities=12% Similarity=0.057 Sum_probs=422.2
Q ss_pred ChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCC----CCCcccHH--HHHHHh-cCCCchh----
Q 041183 30 DFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQGL----RPDAFTFS--SLVKAC-GSLQENE---- 98 (760)
Q Consensus 30 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~--~ll~~~-~~~~~~~---- 98 (760)
+.++.+.++.... ....+|..+...|++.|..++...+++.-....- .++..-+- ..+.++ +..+..+
T Consensus 26 D~~ev~~IL~~e~-a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~ 104 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ-APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKD 104 (1018)
T ss_pred ChHHHHHHHHHhc-CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444433 3456799999999999999999999988662110 11111111 111111 0111000
Q ss_pred ----------HHHHHHHHhcCCCC-chhhhHHHHHHHhcCC--hhhHHHHhhhcCCCCce-eHHHHHHH--HHhcCChhH
Q 041183 99 ----------IVHGVCLKLGFSSR-VYLVSGFIENYAKSGE--IVSAEMCFRDCLDLDNV-AYTAMVCG--YVWNGEFDK 162 (760)
Q Consensus 99 ----------~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~ 162 (760)
.++...-+.....+ ..++.... |...|+ ++.|...|......+.. ....|..+ ....|++..
T Consensus 105 ~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~--~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~ 182 (1018)
T KOG2002|consen 105 EKDELFDKATLLFDLADKIDMYEDSHLLVQRGF--LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRG 182 (1018)
T ss_pred hhHHHHHHHHHHhhHHHHhhccCcchhhhhhhh--hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHH
Confidence 00111001011111 11111111 112232 57777777766542222 12223333 344688899
Q ss_pred HHHHHHHHHHCC--CCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCC
Q 041183 163 SKEVFVEMRSLG--LELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEIT 240 (760)
Q Consensus 163 A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (760)
|+.+|....... ..||+. -.+-.++.+.|+.+.|+..|.+..
T Consensus 183 al~yyk~al~inp~~~aD~r------------------------------------Igig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 183 ALKYYKKALRINPACKADVR------------------------------------IGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHhcCcccCCCcc------------------------------------chhhhHHHhccchhhHHHHHHHHH
Confidence 999999865443 233332 123356788999999999999998
Q ss_pred CCCcchHHHHHHhhc---------ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCC--
Q 041183 241 EPDVVSWSERIAAAC---------DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFME-- 309 (760)
Q Consensus 241 ~~~~~~~~~ll~~~~---------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-- 309 (760)
+-|....++++.-.. ....++.++....... .-++...+.|-.-+--.|+...+..+...+.......
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 866655555554333 4445555555443322 3345566777777888999999999998888765221
Q ss_pred CchhHhHHHHhhhcCCChHHHHHHHhcCCCC--C--eeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041183 310 VVSIGNALISMYGKCGQVNDARSIFDYLIFK--D--SVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILE 385 (760)
Q Consensus 310 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 385 (760)
-...|--+..+|...|++++|...|...... + +..+--+.+.+.+.|+.+.+...|+...+. .+-+..|...+..
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHh
Confidence 2234667788899999999999999876332 2 344556789999999999999999999885 3335667777777
Q ss_pred HhcCcC----CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh------HHHHHHHhhcC-CCCcccHHHHHHHHH
Q 041183 386 AVSNSK----SLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNAL------NESKRVLSEID-KKNAVHINALASVLV 454 (760)
Q Consensus 386 ~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~-~~~~~~~~~l~~~~~ 454 (760)
.|...+ ..+.|..++....+.- +.|...|-.+...+...+-+ ..|..++..-. ...+...|.+.....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 777664 4566666666655543 34667777777766655443 33443333322 235667899999999
Q ss_pred hcCChhHHHHHHHHHHhC---CCCCChh------HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Q 041183 455 YASCHAEALELYRTIWGS---CREVNGS------TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK 525 (760)
Q Consensus 455 ~~~~~~~A~~~~~~m~~~---~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 525 (760)
..|.+.+|...|...... ...++.. +--.+.......++.+.|.+.|+.+.+..+ --+..|..+.-....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARD 542 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHh
Confidence 999999999999988665 2233331 222344555677899999999999998652 223444444433344
Q ss_pred cCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc----------
Q 041183 526 CGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG-VKPDEITYLAVLTSCCH---------- 591 (760)
Q Consensus 526 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~---------- 591 (760)
.+...+|...+..+. ..++..+..+...+.+...+..|.+-|....+.- ..+|..+...|.+.|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 567888888888764 5567778888888888888888888776665532 23576666666664432
Q ss_pred --cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHH
Q 041183 592 --AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGL 667 (760)
Q Consensus 592 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 667 (760)
.+..+.|+++|..+.+ ..+-|...-+.++-+++..|++.+|..+|.+.. ......+|..+...|...|++-.|+
T Consensus 623 k~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHH
Confidence 3457789999999887 455678888999999999999999999999884 3446678999999999999999999
Q ss_pred HHHHHHhccC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 668 LAGSKLLELQ--PDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 668 ~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
+.|+..+... -+++.+...|+.++.+.|++.+|.+.+.......+
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999843 45888999999999999999999999887765443
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.83 E-value=8.6e-17 Score=164.56 Aligned_cols=673 Identities=11% Similarity=0.031 Sum_probs=349.8
Q ss_pred chhhHHhhcCCCCchhhhhHHHHhhccCChhHHHHhhhcCCCC----CcchHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 041183 2 IYSLLIKNGHHLDPILSTTLISHFTKFADFRRAFRFLFDTQNR----DIITYNALISGLARFCQSGPALKLFDRLRYQGL 77 (760)
Q Consensus 2 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 77 (760)
+|..+.+.|+.||..||.+||..||..|+.+.|- +|..|+-+ +...|+.++.+..++++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 7899999999999999999999999999999997 88887643 4457899999999999988885
Q ss_pred CCCcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC--CCceeHHHHHHHHH
Q 041183 78 RPDAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD--LDNVAYTAMVCGYV 155 (760)
Q Consensus 78 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 155 (760)
.|...||..|+.+|+..||... ++.+++ -...++..+...|.-..-..++-.+.- .....-...+.-..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 7899999999999999999873 333333 223344555566655555555544211 11111222344455
Q ss_pred hcCChhHHHHHHHHHHHCCC-CCChhhHHHHHHhccCc-cchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHH
Q 041183 156 WNGEFDKSKEVFVEMRSLGL-ELNEFSLTAVLGASFDV-KEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAV 233 (760)
Q Consensus 156 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (760)
..|-++.+++++..|..... .|-.+ +++-+... ...+.+...... ... ..+...+..++.+-..+|+.+.|.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cks-l~e-~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKS-LVE-APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHH-hhc-CCChHHHHHHHHHHHhcCchhhHH
Confidence 56667777777766532211 01111 12222221 122222221111 111 344444455555555555555555
Q ss_pred HHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchh
Q 041183 234 KMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSI 313 (760)
Q Consensus 234 ~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 313 (760)
.++. +|++.|++.+.+-|..+|-+ .++...+..++..|...|+.|+..|
T Consensus 225 ~ll~----------------------------emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 225 NLLY----------------------------EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred HHHH----------------------------HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 5554 45555555555544444443 4445555555555555555555555
Q ss_pred HhHHHHhhhcCCChHHHHHH------------------------Hhc---------CC-------CCCeeeHHHHHHHHH
Q 041183 314 GNALISMYGKCGQVNDARSI------------------------FDY---------LI-------FKDSVSWNSMIAGYS 353 (760)
Q Consensus 314 ~~~li~~~~~~g~~~~A~~~------------------------~~~---------~~-------~~~~~~~~~li~~~~ 353 (760)
+...+..+...|....+... ++. .+ ......|...+. ..
T Consensus 274 ~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~ 352 (1088)
T KOG4318|consen 274 QADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LR 352 (1088)
T ss_pred hHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HH
Confidence 55444444443332211111 110 00 001112222111 11
Q ss_pred hcCCccHHHHHHHHHHHC--CCCC-CHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 041183 354 ENGFFNQALDMFCHMLEF--SLIP-NGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNE 430 (760)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~--~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (760)
..|.-++..++...|..- ...| +...|..++.-|.+.-+......++. ...| ++..........
T Consensus 353 hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~--~~qg-----------ls~~l~se~tp~ 419 (1088)
T KOG4318|consen 353 HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY--AGQG-----------LSLNLNSEDTPR 419 (1088)
T ss_pred HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH--HHHH-----------HHhhhchhhhHH
Confidence 234444444443333211 0111 11122222222221111111111111 0000 000001111222
Q ss_pred HHHHHhhcCC----------------CCcc-----------cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 041183 431 SKRVLSEIDK----------------KNAV-----------HINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSI 483 (760)
Q Consensus 431 A~~~~~~~~~----------------~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 483 (760)
..++.....+ +... .-+.++..+++.-+..+++..-+.....-+. ..|..
T Consensus 420 vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~ 496 (1088)
T KOG4318|consen 420 VSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYAL 496 (1088)
T ss_pred HHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHH
Confidence 2222222211 0001 1234555555555555555443333332222 56888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-hHhHHHHHHHHH
Q 041183 484 VLKACAAMTDLEQGKAIHCLALKA--RYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR-----DS-LAGWNAMMMGYA 555 (760)
Q Consensus 484 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~l~~~~~ 555 (760)
++.-++.....+.|..+.++.... .+..|..-+..+.+.+.+.+...++..++.++.+ ++ ..++--++...+
T Consensus 497 Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a 576 (1088)
T KOG4318|consen 497 LIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGA 576 (1088)
T ss_pred HhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhh
Confidence 899898888899998888887652 3345677788888999999999999998888753 21 123344555556
Q ss_pred HcCCHHHHHHHHHHHHHCCC------------------------------CCCHHHHHHHHHH-----------------
Q 041183 556 QHGCYHEVSNLFNKMSKFGV------------------------------KPDEITYLAVLTS----------------- 588 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~------------------------------~p~~~~~~~l~~~----------------- 588 (760)
..|+.+...++++-+...|+ +|.+.....+.+.
T Consensus 577 ~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~ 656 (1088)
T KOG4318|consen 577 PAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSI 656 (1088)
T ss_pred hccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcc
Confidence 66676666666655544443 2222111111111
Q ss_pred ----HhccCcHHHHHHHHHHhhhhcCCC---------------C---------ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 041183 589 ----CCHAGLVREARTYLSCMSDLHGLI---------------P---------QLEHYACIVDLLGRVGLLEGAKMTIDQ 640 (760)
Q Consensus 589 ----~~~~g~~~~A~~~~~~~~~~~~~~---------------~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (760)
|.+.|++..|.++.+. .|+. | +......|+..|.+.|+++.|..++.+
T Consensus 657 ~iq~f~k~g~~~~a~di~et----pG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK 732 (1088)
T KOG4318|consen 657 PIQKFEKLGSCVDAGDITET----PGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNK 732 (1088)
T ss_pred hhHHHHhcccccchhhcccc----CcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhh
Confidence 2222222222222211 1110 0 011123377788889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041183 641 MPIPPDAHIWQSLLSACTIY---GNIDLGLLAGSKLLELQP---DNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCK 714 (760)
Q Consensus 641 ~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (760)
++..|++.+...|...+.+. -|+.++....+++.++.| -+...|..-+....+....+.|.+.|.+..++....
T Consensus 733 ~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~ 812 (1088)
T KOG4318|consen 733 DQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVS 812 (1088)
T ss_pred CcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCC
Confidence 98888888877777776543 366677777777777544 344445555555556666668899999998875444
Q ss_pred CCc----eeEEEECCE---EEEEEcCCCCC--CChHHHHHHHHHHHHH
Q 041183 715 EPG----YSWIHVGGY---THHFYAGDSSH--SQSKEIYKELIKLYEH 753 (760)
Q Consensus 715 ~~~----~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 753 (760)
+.. .-|..+.++ +..+..|+.+. -++..|..-+.+++-.
T Consensus 813 tad~ls~f~k~L~~nd~~aa~sha~Ges~~~l~tsRli~~llRrlgl~ 860 (1088)
T KOG4318|consen 813 TADELSDFLKCLVKNDQLAAQSHASGESSKELLTSRLINILLRRLGLA 860 (1088)
T ss_pred cHHHHHHHHHHHHhcCHHHHHhcccccchhhhhhHHHHHHHHHHhhHH
Confidence 432 223333333 22222333333 2356666666666543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=7.8e-17 Score=175.76 Aligned_cols=351 Identities=11% Similarity=0.000 Sum_probs=269.2
Q ss_pred hcCCChHHHHHHHhcCCCC------CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHH
Q 041183 322 GKCGQVNDARSIFDYLIFK------DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQ 395 (760)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 395 (760)
.+..+++.-.-.|...++. +......++..+.+.|++++|..+++........+ ...+..++.++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 3455666655555555332 33445567788889999999999999988764333 3344455566677999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 396 AMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK---NAVHINALASVLVYASCHAEALELYRTIWGS 472 (760)
Q Consensus 396 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 472 (760)
|...++.+..... .+...+..+...+...|++++|...+++..+. +...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999987643 35667788888999999999999999887652 4567788888999999999999999988765
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHH
Q 041183 473 CREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNA 549 (760)
Q Consensus 473 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 549 (760)
...+.. .+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++... ..+...+..
T Consensus 174 ~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 433322 23223 3477889999999999998876544445555666788889999999999998874 335567888
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHH
Q 041183 550 MMMGYAQHGCYHE----VSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVD 623 (760)
Q Consensus 550 l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 623 (760)
+...+...|++++ |...|++..+ ..|+ ...+..+...+...|++++|...++.+.+ ..| +...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 8999999999885 8999999988 5675 46788888899999999999999999987 344 4567788899
Q ss_pred HhhhcCChHHHHHHHHhCC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 624 LLGRVGLLEGAKMTIDQMP-IPPDAHI-WQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
++.+.|++++|...++++. ..|+... +..+..++...|+.++|...|+++++..|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999883 4565444 44456678899999999999999999988753
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=4.4e-16 Score=173.86 Aligned_cols=397 Identities=8% Similarity=0.001 Sum_probs=203.0
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhcC
Q 041183 280 INLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL---IFKDSVSWNSMIAGYSENG 356 (760)
Q Consensus 280 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g 356 (760)
.-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|+.. ...+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 334444455566666665555554411 223334555555666666666666666654 2223444555555566666
Q ss_pred CccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 041183 357 FFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLS 436 (760)
Q Consensus 357 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (760)
++++|+..+++..+. .+.+.. +..+..++...|+.++|...++.+.+.... +...+..+..++...+..+.|.+.++
T Consensus 98 ~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 666666666666554 122233 555555555666666666666666554322 33344445555555566666666555
Q ss_pred hcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHH-----hccCCH---HHHHHHHHHHHHc-
Q 041183 437 EIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKAC-----AAMTDL---EQGKAIHCLALKA- 507 (760)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~- 507 (760)
.... ++.....+ .......++... ...+++ +.|.+.++.+.+.
T Consensus 175 ~~~~-~p~~~~~l---------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 175 DANL-TPAEKRDL---------------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred hCCC-CHHHHHHH---------------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 5443 11100000 000001111111 111112 4455555555432
Q ss_pred CCCCCch-HHH----HHHHHHHhcCCHHHHHHHHHhcCCCC---hH-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 041183 508 RYDQDIF-VES----AVIDMYCKCGTIEDAKRAFRKICRDS---LA-GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD 578 (760)
Q Consensus 508 ~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 578 (760)
...|+.. .+. ..+..+...|++++|+..|+.+...+ +. ....+..+|...|++++|+..|+++.+. .|.
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~ 304 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PET 304 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCC
Confidence 1112111 110 00222344566666666666654321 11 1112345566666666666666665542 221
Q ss_pred -----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC----------CCCC---hhHHHHHHHHhhhcCChHHHHHHHHh
Q 041183 579 -----EITYLAVLTSCCHAGLVREARTYLSCMSDLHG----------LIPQ---LEHYACIVDLLGRVGLLEGAKMTIDQ 640 (760)
Q Consensus 579 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (760)
......+..++...|++++|.++++.+.+... -.|+ ...+..++..+...|++++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12344444556666666666666666655110 0112 12344556666677777777777776
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 641 MP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 641 ~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+. .+.+...+..+...+...|++++|++.+++++++.|++...+..++..+.+.|++++|...++++.+.
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 52 34445666666667777777777777777777777777777777777777777777777777666553
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=4.8e-17 Score=169.58 Aligned_cols=292 Identities=13% Similarity=0.119 Sum_probs=194.4
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 041183 349 IAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNAL 428 (760)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (760)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-------------- 106 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR-------------- 106 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH--------------
Confidence 334556677777777777776642 12334556666666666666666666666655322111100
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 041183 429 NESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKAR 508 (760)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 508 (760)
...+..++..|...|++++|...|+++.+.. .++..++..++..+...|++++|.+.++.+.+.+
T Consensus 107 --------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 107 --------------LLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 0123344444555555555555555554431 2344456666666666666666666666666544
Q ss_pred CCCC----chHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--H
Q 041183 509 YDQD----IFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD--E 579 (760)
Q Consensus 509 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~ 579 (760)
..+. ...+..+...+...|++++|...|+++. +.+...+..+...+.+.|++++|.++|+++.+. .|+ .
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 249 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLS 249 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHH
Confidence 2221 1234456667777888888888887764 223456777888888999999999999998874 344 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAHIWQSLLSACT 658 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 658 (760)
.++..+..++...|++++|...++.+.+ ..|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 5677888899999999999999999887 4567677788899999999999999999876 46788888888887766
Q ss_pred h---cCChhHHHHHHHHHhc
Q 041183 659 I---YGNIDLGLLAGSKLLE 675 (760)
Q Consensus 659 ~---~~~~~~A~~~~~~~~~ 675 (760)
. .|+.++++..++++++
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 4 4588888888888886
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.8e-16 Score=174.34 Aligned_cols=360 Identities=10% Similarity=0.075 Sum_probs=230.6
Q ss_pred hHHHHhhhcCCChHHHHHHHhcCCC--C-CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcCc
Q 041183 315 NALISMYGKCGQVNDARSIFDYLIF--K-DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIP-NGYTMASILEAVSNS 390 (760)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 390 (760)
.-.+......|+.++|++++..... + +...+..+...+...|++++|.+++++..+. .| +...+..+...+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 3444455566777777777766532 1 2334666666777777777777777776653 23 344455556666667
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHH
Q 041183 391 KSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK---NAVHINALASVLVYASCHAEALELYR 467 (760)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 467 (760)
|++++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.+. +...+..+..++...+..++|+..++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 77777777777666552 22333 555666666666666666666665542 22334444555555566666666555
Q ss_pred HHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH-----HhcCCH---HHHHHHHHhc
Q 041183 468 TIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMY-----CKCGTI---EDAKRAFRKI 539 (760)
Q Consensus 468 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~A~~~~~~~ 539 (760)
.... .|+.. ...+ ......++... ...+++ ++|++.++.+
T Consensus 175 ~~~~---~p~~~----------------~~l~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 175 DANL---TPAEK----------------RDLE-------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred hCCC---CHHHH----------------HHHH-------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 4432 22200 0000 00011111111 122233 6777777766
Q ss_pred C---C--CChH-hH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhh
Q 041183 540 C---R--DSLA-GW----NAMMMGYAQHGCYHEVSNLFNKMSKFGVK-PDEITYLAVLTSCCHAGLVREARTYLSCMSDL 608 (760)
Q Consensus 540 ~---~--~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 608 (760)
. . |+.. .+ ...+..+...|++++|+..|+++.+.+-. |+. ....+..++...|++++|+..|+.+.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 4 1 2211 11 11134456779999999999999986532 433 2222567899999999999999998762
Q ss_pred cCCCC--ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-------------C---HHHHHHHHHHHHhcCChhHHHHH
Q 041183 609 HGLIP--QLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPP-------------D---AHIWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 609 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~---~~~~~~l~~~~~~~~~~~~A~~~ 669 (760)
....+ .......|..++...|++++|.++++.+. ..| + ...+..+...+...|+.++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21111 13456777888899999999999999883 222 3 23456677788999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 670 GSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 670 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
++++....|+++..+..++.++...|++++|+..+++..+..
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999988755
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.6e-16 Score=171.75 Aligned_cols=327 Identities=11% Similarity=-0.014 Sum_probs=267.7
Q ss_pred hhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcccHHHHHHHHH
Q 041183 378 YTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK---NAVHINALASVLV 454 (760)
Q Consensus 378 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 454 (760)
.....++..+.+.|+++.|..+++........+ ......++.+....|++++|...++++... ++..+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345667888899999999999999998876554 445555667777899999999999998753 4567888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 041183 455 YASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKR 534 (760)
Q Consensus 455 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 534 (760)
..|++++|...|++..... +.+...+..+...+...|+.+.|...+..+..... .+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998753 23455778888899999999999999998877653 233344333 34788999999999
Q ss_pred HHHhcCCC----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHH----HHHHHHHh
Q 041183 535 AFRKICRD----SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVRE----ARTYLSCM 605 (760)
Q Consensus 535 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~----A~~~~~~~ 605 (760)
.++.+... +...+..+...+...|++++|+..++++.+. .| +...+..+...+...|++++ |...++.+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99987532 2334455677889999999999999999984 56 45677778889999999986 89999999
Q ss_pred hhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 041183 606 SDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNEST 683 (760)
Q Consensus 606 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 683 (760)
.+ -.+.+...+..++..+.+.|++++|...+++.. .+.+...+..+..++...|++++|+..++++.+..|+++..
T Consensus 277 l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 277 LQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 87 233457889999999999999999999999883 34456678888999999999999999999999999988877
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 684 YVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
+..++.++...|++++|+..|++..+...
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 77789999999999999999999887643
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=7.5e-16 Score=169.04 Aligned_cols=378 Identities=10% Similarity=0.002 Sum_probs=272.4
Q ss_pred eHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 041183 344 SWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYG 423 (760)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (760)
.+......+.+.|++++|+..|++... +.|+...|..+..++...|++++|...++..++... .+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 456677889999999999999999887 568888899999999999999999999999887642 35678888999999
Q ss_pred hcCChHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhHH-----------------
Q 041183 424 KCNALNESKRVLSEIDKKNA---VHINALASVLVYASCHAEALELYRTIWGSCRE--VNGSTF----------------- 481 (760)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~----------------- 481 (760)
..|++++|...|..+...+. .....++..+.. ..+............. |.....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 99999999988866543221 111122221111 1122222221111100 000000
Q ss_pred -------------HHHHHH---HhccCCHHHHHHHHHHHHHcC--CCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 041183 482 -------------SIVLKA---CAAMTDLEQGKAIHCLALKAR--YDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC--R 541 (760)
Q Consensus 482 -------------~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~ 541 (760)
..+... ....++++.|.+.++...+.+ .+.....+..+...+...|++++|...|++.. .
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 000000 122357888889998888754 22345677888888889999999999998874 3
Q ss_pred C-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHH
Q 041183 542 D-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYA 619 (760)
Q Consensus 542 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 619 (760)
| ....|..+...+...|++++|...|+++.+ ..| +...+..+...+...|++++|...|+...+ ..+.+...+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALK--LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 3 345788888889999999999999999888 456 457788888889999999999999999987 2333567788
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH-------HHHH
Q 041183 620 CIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL-------LSNL 690 (760)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-------l~~~ 690 (760)
.++.++.+.|++++|+..+++. . .+.++..|+.+...+...|++++|+..+++++++.|++...+.. .+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8888999999999999999887 2 34457788888999999999999999999999998864433221 1223
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 691 YASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
+...|++++|..++++..+. +|+....+..++++|.+.|+.+
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--------------------------~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--------------------------DPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHccCHH
Confidence 34469999999999987654 4556667777888888777654
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.1e-14 Score=135.39 Aligned_cols=438 Identities=14% Similarity=0.067 Sum_probs=272.7
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCc---cchhhHHHH-HHhhccCCCcchhHHHHHH
Q 041183 145 VAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDV---KEGEQIHGF-GVKVGFLSGVCNHLNNAIM 220 (760)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~li 220 (760)
.+=|.|+. ....|.+..+.-+++.|++.|+..+...-..+++..+-. +....-+.+ +....+ .......|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~-~E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF-GEDSTSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc-cccccccc----
Confidence 35555554 446788899999999999999887776655555543322 211111111 111111 01111111
Q ss_pred HHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhc---ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHH
Q 041183 221 NLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAAC---DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQ 297 (760)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 297 (760)
+.|++.+ ++-+...+...++.++|+++| ..+.|.+++++-.....+.+..+||.+|.+.+-.- .++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHH
Confidence 3344433 444444456678999999999 88999999999998889999999999998765332 278
Q ss_pred HHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH
Q 041183 298 IQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNG 377 (760)
Q Consensus 298 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 377 (760)
++.+|.+..+.||..++|+++.+..+.|+++.|.+ .|.+++.+|++-|+.|..
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcch
Confidence 88889988889988888888888888888776643 355667777777777777
Q ss_pred hhHHHHHHHhcCcCCHHH-HHHHHHHHHHh----CCCC----ChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-------
Q 041183 378 YTMASILEAVSNSKSLKQ-AMQVHSHIIKS----GFLL----DDSMISCLITTYGKCNALNESKRVLSEIDKK------- 441 (760)
Q Consensus 378 ~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------- 441 (760)
.+|..+|..+++.++..+ +..++.++... .++| +...|..-+..|.+..+.+-|..+-.-+...
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 777777777777766543 33344444321 1222 3345556666677777777776665554432
Q ss_pred ----CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHH
Q 041183 442 ----NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVES 517 (760)
Q Consensus 442 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 517 (760)
....|..+....++....+.-+..|+.|.-.-+-|+..+...++.+..-.+.++-..++|.++...|...+...-.
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 1223556667778888888899999999888888999999999999999999999999999999988654443333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChH---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKICRDSLA---GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGL 594 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 594 (760)
-+...+++.. ..|+.. -+.....-++ ..-.+.....-.+|.+..+.| ...+.++-.+.+.|.
T Consensus 473 eil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 473 EILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcch
Confidence 3333333322 012111 1111111111 001111122233444433333 344445555677777
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHH---HHHHHhhhcCChHHHHHHHHhC
Q 041183 595 VREARTYLSCMSDLHGLIPQLEHYA---CIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
.++|.++|..+.++..-.|.....+ -+++.-.+...+-.|...++-|
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777777755333333333333 4555556666777777777766
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.3e-15 Score=140.71 Aligned_cols=295 Identities=14% Similarity=0.151 Sum_probs=214.0
Q ss_pred chhhHHhhcCCCCchhhhhHHHHhhccC---ChhHHHH-----------------------hhhcCCCCCcchHHHHHHH
Q 041183 2 IYSLLIKNGHHLDPILSTTLISHFTKFA---DFRRAFR-----------------------FLFDTQNRDIITYNALISG 55 (760)
Q Consensus 2 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~-----------------------~~~~~~~~~~~~~~~ll~~ 55 (760)
+|++|...|++-++.+--.|++.-+-.+ -+---++ ++.+..+++..+|..||.+
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~G 216 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIMIAG 216 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHHHHHH
Confidence 5778888888888776666655443221 1111122 3333345677789999999
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHH
Q 041183 56 LARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMC 135 (760)
Q Consensus 56 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 135 (760)
+|+--..+.|.+++++-.++..+.+..+|+.+|.+..-..+ .+++..|......||..|+|+++++.++.|+++.|.+
T Consensus 217 l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~- 294 (625)
T KOG4422|consen 217 LCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK- 294 (625)
T ss_pred HHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH-
Confidence 99999999999999999998889999999999988654433 5788889999999999999999999888888888775
Q ss_pred hhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHH-----h-----h
Q 041183 136 FRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGV-----K-----V 205 (760)
Q Consensus 136 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~-----~-----~ 205 (760)
.|++++.+|++.|+.|...+|..+|..+.+.++..++...+. . -
T Consensus 295 --------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 295 --------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred --------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 667777777778888887788777777766633322222211 0 0
Q ss_pred ccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCC-----------CCcchHHHHHHhhc---ChhHHHHHHHHHhhCC
Q 041183 206 GFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITE-----------PDVVSWSERIAAAC---DGVEAFGLFKDLRFND 271 (760)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~ 271 (760)
.+-.+.+...+...++.|.+..+.+.|.++..-... ...+.|..+....| ..+..+.+|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 122355666677788888888888888877544332 12234455555555 7888899999999999
Q ss_pred ccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcC
Q 041183 272 FQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKC 324 (760)
Q Consensus 272 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 324 (760)
.-|+..+...++++....+.++-...++..++..|.........-++..+++.
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888665555444444444443
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=2.1e-13 Score=141.09 Aligned_cols=629 Identities=13% Similarity=0.120 Sum_probs=357.6
Q ss_pred cCChhHHHHhhhcCC---CCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHH
Q 041183 28 FADFRRAFRFLFDTQ---NRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVC 104 (760)
Q Consensus 28 ~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 104 (760)
.|++++|.+++.++. +.+...|.+|...|-..|+.+.++..+-.. .++
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL--------------------------- 202 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHL--------------------------- 202 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--Hhc---------------------------
Confidence 366666666665543 234445666666666666555554443222 111
Q ss_pred HHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCCC---CceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh
Q 041183 105 LKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLDL---DNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFS 181 (760)
Q Consensus 105 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 181 (760)
.+-|...|..+.......|+++.|.-.|.+..+. +...+---...|.+.|+...|...|.+|.+...+.|..-
T Consensus 203 ----~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 203 ----NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred ----CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 1334566677777778889999999999888763 323334455678889999999999999988765333322
Q ss_pred HHHHHHhccCc----cchhh----HHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCC----CCcchHHH
Q 041183 182 LTAVLGASFDV----KEGEQ----IHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITE----PDVVSWSE 249 (760)
Q Consensus 182 ~~~ll~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 249 (760)
+..++...... ...+. +.+.+.+.+ ...+...++.++..+.+...++.|......+.. +|...|..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 32222221111 11111 111111101 122223334444444444444444444333321 11111100
Q ss_pred HHHhhcChhHHHHHHHHHhh--CCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHc--CCCCchhHhHHHHhhhcCC
Q 041183 250 RIAAACDGVEAFGLFKDLRF--NDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVG--FMEVVSIGNALISMYGKCG 325 (760)
Q Consensus 250 ll~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g 325 (760)
--.. -.-+.-... .++.++... ..+.-++.+....+....+...+.+.. +..+...|.-+..+|...|
T Consensus 357 ~~~~-------~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 357 DERR-------REEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred hhhc-------cccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 0000 000000000 011111111 123334455666777777777777777 4456678888899999999
Q ss_pred ChHHHHHHHhcCCC----CCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCH-hhHHHHHHHhcCcCCHHHHHHHH
Q 041183 326 QVNDARSIFDYLIF----KDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNG-YTMASILEAVSNSKSLKQAMQVH 400 (760)
Q Consensus 326 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 400 (760)
.+.+|.++|..+.. .+...|-.+..+|...|..++|++.|...... .|+. ..-..|-..+.+.|+.++|.+.+
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 99999999988833 25678888999999999999999999998874 4543 34456667788889999999998
Q ss_pred HHHH--------HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC--------------------------CcccH
Q 041183 401 SHII--------KSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK--------------------------NAVHI 446 (760)
Q Consensus 401 ~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~ 446 (760)
+.+. ..+..|+..........+...|+.++-..+-..|..+ +....
T Consensus 507 ~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~ 586 (895)
T KOG2076|consen 507 EQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELL 586 (895)
T ss_pred hcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhH
Confidence 8854 2344556666666677788888877655444333210 11111
Q ss_pred HHHHHHHHhcCChhHHH------HHHHHHHhCCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCch---
Q 041183 447 NALASVLVYASCHAEAL------ELYRTIWGSCREVNG--STFSIVLKACAAMTDLEQGKAIHCLALKARY-DQDIF--- 514 (760)
Q Consensus 447 ~~l~~~~~~~~~~~~A~------~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--- 514 (760)
...+.+-.+.++..... ..+..-...|...+. ..+.-++.++++.+.++.|..+...+.+... ..+..
T Consensus 587 ~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k 666 (895)
T KOG2076|consen 587 KQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRK 666 (895)
T ss_pred HHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 22222222222211111 111111112222222 1344566677888889999888888776432 11211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch---HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 041183 515 -VESAVIDMYCKCGTIEDAKRAFRKICRD-----SL---AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAV 585 (760)
Q Consensus 515 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 585 (760)
.-...+.+.+..+++..|.+.++.+... ++ ..||...+.+.+.++-.--.+.+..... .+|+......+
T Consensus 667 ~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~ 744 (895)
T KOG2076|consen 667 ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLAL 744 (895)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceee
Confidence 2234456667788899998888877533 32 2577666666666554444444444333 23333122222
Q ss_pred H--HHHhccCcHHHHHHHHHHhhhhcCCCCChhHHH-HHHHHhh--hcC--------ChHHHHHHHHhCC--CCC--CHH
Q 041183 586 L--TSCCHAGLVREARTYLSCMSDLHGLIPQLEHYA-CIVDLLG--RVG--------LLEGAKMTIDQMP--IPP--DAH 648 (760)
Q Consensus 586 ~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~--~~g--------~~~~A~~~~~~~~--~~p--~~~ 648 (760)
+ .-+...+.+..|+..+-.+.. ..|+....+ +++-++. ..+ ..-+++.++.+.. ..+ ...
T Consensus 745 i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QE 821 (895)
T KOG2076|consen 745 IYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQE 821 (895)
T ss_pred eechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 2 234567888999998888876 445533332 2222322 111 2334455554441 123 566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------------chhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQPDN------------ESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
++..++++|...|=...|..+|++++++.|.+ ..+-..|..+|...|+...|..++++
T Consensus 822 a~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 822 AFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 88889999999999999999999999987642 33566788899999999999999875
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=5.7e-14 Score=153.46 Aligned_cols=442 Identities=9% Similarity=0.019 Sum_probs=268.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHH
Q 041183 153 GYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDA 232 (760)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (760)
...+.|+++.|+..|++..+.. |+.. +.+ ..++..+...|+.++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~--------------------------------~av-~dll~l~~~~G~~~~A 87 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQS--------------------------------GQV-DDWLQIAGWAGRDQEV 87 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccch--------------------------------hhH-HHHHHHHHHcCCcHHH
Confidence 4678999999999999998765 2211 112 2677777888999999
Q ss_pred HHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCch
Q 041183 233 VKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVS 312 (760)
Q Consensus 233 ~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 312 (760)
+..+++...|+...+..++ .+...+...|+++.|.++++.+.+..... +.
T Consensus 88 ~~~~eka~~p~n~~~~~ll-----------------------------alA~ly~~~gdyd~Aiely~kaL~~dP~n-~~ 137 (822)
T PRK14574 88 IDVYERYQSSMNISSRGLA-----------------------------SAARAYRNEKRWDQALALWQSSLKKDPTN-PD 137 (822)
T ss_pred HHHHHHhccCCCCCHHHHH-----------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HH
Confidence 9998887655443332211 12234445566666666666665544322 34
Q ss_pred hHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHh--cCCccHHHHHHHHHHHCCCCC-CHhhHHHHHHHhcC
Q 041183 313 IGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSE--NGFFNQALDMFCHMLEFSLIP-NGYTMASILEAVSN 389 (760)
Q Consensus 313 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 389 (760)
++..++..+...++.++|++.++++...+......+..++.. .++..+|++.++++.+. .| +...+..+..++.+
T Consensus 138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 138 LISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 444556666666777777777776644433322223333333 34444466666666664 23 34445555566666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCC---hhHHHHHH
Q 041183 390 SKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASC---HAEALELY 466 (760)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~ 466 (760)
.|-...|.++..+-. +..+-...... +.+.|.+.......++. ....+ .+.|+.-+
T Consensus 216 ~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 216 NRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----------SETERFDIADKALADY 274 (822)
T ss_pred cCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHH
Confidence 666666555444311 11110000000 00111111100000000 00111 23455555
Q ss_pred HHHHhC-CCCCChh-----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 041183 467 RTIWGS-CREVNGS-----TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC 540 (760)
Q Consensus 467 ~~m~~~-~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 540 (760)
+.+... +..|... ...--+-++...++...+++.++.+...+.+....+-..+.++|...+++++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 554432 1112211 1122344666777788888888888777765556677777888888888888888887763
Q ss_pred CC---------ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHHhccCcHHH
Q 041183 541 RD---------SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG-------------VKPDE-ITYLAVLTSCCHAGLVRE 597 (760)
Q Consensus 541 ~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~-~~~~~l~~~~~~~g~~~~ 597 (760)
.+ +......|.-++...+++++|..+++++.+.- ..||- ..+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 21 12224567777888888888888888887621 11222 234445677888999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 598 ARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IP-PDAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 598 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
|++.++.+.. .-|-|......+.+++...|++.+|.+.++.+. .. .+..+....+.++...+++.+|..+.+...+
T Consensus 435 Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 435 AQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999977 455578888999999999999999999998773 34 4466777888888899999999999999999
Q ss_pred cCCCCchhH
Q 041183 676 LQPDNESTY 684 (760)
Q Consensus 676 ~~p~~~~~~ 684 (760)
..|+++.+-
T Consensus 513 ~~Pe~~~~~ 521 (822)
T PRK14574 513 RSPEDIPSQ 521 (822)
T ss_pred hCCCchhHH
Confidence 999887544
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3.3e-14 Score=155.30 Aligned_cols=420 Identities=10% Similarity=0.028 Sum_probs=297.2
Q ss_pred hcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeH-HHH--HHHHHhcCCccHHH
Q 041183 286 VGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSW-NSM--IAGYSENGFFNQAL 362 (760)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~g~~~~a~ 362 (760)
..+.|+...|...+....+....-.+.++ .++..+...|+.++|...+++...|+...+ ..+ ...+...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45677888888888887766543323344 777777788999999999988876644433 333 44677779999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-
Q 041183 363 DMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK- 441 (760)
Q Consensus 363 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 441 (760)
++|+++.+.. +-+...+..++..+...++.++|.+.++.+... .|+...+..++..+...++..+|++.++++.+.
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999988753 223556667778888888999999888888765 334444544555555566666688888888753
Q ss_pred --CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH------HHHHHHHH-----hccCC---HHHHHHHHHHHH
Q 041183 442 --NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGST------FSIVLKAC-----AAMTD---LEQGKAIHCLAL 505 (760)
Q Consensus 442 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~------~~~ll~~~-----~~~~~---~~~a~~~~~~~~ 505 (760)
+...+..++.++.+.|-...|+++..+-.+. +.+...- ....+..- ....+ .+.|..-++.+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 4556677778888888888888776653211 1111110 11111111 01122 334444455544
Q ss_pred H-cCCCCC-chH----HHHHHHHHHhcCCHHHHHHHHHhcCCCC--hH--hHHHHHHHHHHcCCHHHHHHHHHHHHHCC-
Q 041183 506 K-ARYDQD-IFV----ESAVIDMYCKCGTIEDAKRAFRKICRDS--LA--GWNAMMMGYAQHGCYHEVSNLFNKMSKFG- 574 (760)
Q Consensus 506 ~-~~~~~~-~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~g- 574 (760)
. .+..|. ... ..-.+-++...|++.++.+.|+.+..+. +. +-..+.++|...+++++|..+|+.+....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 4 111132 122 2234567788999999999999997443 23 45678899999999999999999987643
Q ss_pred ----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC----------CCCC---hhHHHHHHHHhhhcCChHHHHHH
Q 041183 575 ----VKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHG----------LIPQ---LEHYACIVDLLGRVGLLEGAKMT 637 (760)
Q Consensus 575 ----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 637 (760)
..++......|..++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122334457889999999999999999999987211 0122 23445577888999999999999
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 638 IDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 638 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++++. .+-|...+..+...+...|.+.+|++.++.+..++|++..+....+.++...|+|++|..+.+.+.+.
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99993 56788899999999999999999999999999999999999999999999999999998888766443
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=2.8e-13 Score=139.29 Aligned_cols=624 Identities=11% Similarity=0.028 Sum_probs=357.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhcCCCchh--HHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCCCC
Q 041183 66 LKLFDRLRYQGLRPDAFTFSSLVKACGSLQENE--IVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLDLD 143 (760)
Q Consensus 66 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 143 (760)
..++-.+...|+.|+.+||.++|..||..|+.+ .++..|+-...+-+...++.++.+....++.+.+. +|.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 356777888899999999999999999999988 67888888888888999999999888888888776 578
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHH-HHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHH
Q 041183 144 NVAYTAMVCGYVWNGEFDKSKEVFVE-MRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNL 222 (760)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (760)
..+|+.|..+|.++||+.- ++..++ |.. ++..+...+.+......+.+..-.....+.. ..++..
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-~n~ill 148 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDA-ENAILL 148 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhH-HHHHHH
Confidence 8899999999999998765 222222 211 1111111111111122222211111222333 334445
Q ss_pred hHhcCCHHHHHHHhccCCC--CCcchHHHHHHhhc-ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHH
Q 041183 223 YVRCGQKLDAVKMFDEITE--PDVVSWSERIAAAC-DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQ 299 (760)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 299 (760)
..-.|-++.+++++..++. .+. +.-..+.-.. ......+++...+.-.-.|+..+|..++......|+.+.|..++
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 5667889999999988875 111 1111244444 22233333322222212688889999999888899999999999
Q ss_pred HHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC----CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCC
Q 041183 300 AFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL----IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIP 375 (760)
Q Consensus 300 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 375 (760)
..|.+.|++.+..-+-.|+-+ .++..-++.++..| +.|+..|+...+-.+.++|....+ +.| .|
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq 295 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQ 295 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cc
Confidence 999999988888777666655 56666666666555 566777766666555554441111 111 12
Q ss_pred CHhhHHHHHHHhcCcCCHHHHHHHHH---------HH---HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC--
Q 041183 376 NGYTMASILEAVSNSKSLKQAMQVHS---------HI---IKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK-- 441 (760)
Q Consensus 376 ~~~~~~~ll~~~~~~~~~~~a~~~~~---------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 441 (760)
....+++-...-.-.| ..|.+.++ .. .-.|+.....+|...+. ....|+-++...+-..+..+
T Consensus 296 ~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~ 372 (1088)
T KOG4318|consen 296 LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTL 372 (1088)
T ss_pred hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCcc
Confidence 2222222111111111 11111111 11 11233333333332222 22255555555555554432
Q ss_pred -----CcccHHHHHHHHHhcC----------------------ChhHHHHHHHHHHh------------C----CC----
Q 041183 442 -----NAVHINALASVLVYAS----------------------CHAEALELYRTIWG------------S----CR---- 474 (760)
Q Consensus 442 -----~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~m~~------------~----~~---- 474 (760)
++..+..++.-|.+.- ...+..+.+...+. . ..
T Consensus 373 r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 373 RDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred ccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccch
Confidence 2222333332222211 11111111111100 0 00
Q ss_pred ---CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH------
Q 041183 475 ---EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLA------ 545 (760)
Q Consensus 475 ---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------ 545 (760)
.+-...-+.++..|+..-+..++...-+.....-+ +..|..||+.++.....+.|..+.++...++..
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~ 529 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLP 529 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccH
Confidence 01111233455556655566665544444433322 267889999999999999999999998766544
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGV-KPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
-+..+.+.+.+.+...++..++.++.+.-. .|+ ..++..++......|+.+...+.++-+.. .|+.-+ ..++.
T Consensus 530 ~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~ 604 (1088)
T KOG4318|consen 530 LMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWM 604 (1088)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceE
Confidence 477888889999999999999999987422 222 35566677777888998888888888776 565553 55666
Q ss_pred HhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHH
Q 041183 624 LLGRVGLLEGAKMTIDQM--PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVG 701 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 701 (760)
...+.++...|.++++.. +.+|.+.....+.+...+ +..+ ..+++.++.-.-. .|.+.|++.+|.
T Consensus 605 vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k-e~td----~~qk~mDls~~iq--------~f~k~g~~~~a~ 671 (1088)
T KOG4318|consen 605 VHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK-ETTD----SPQKTMDLSIPIQ--------KFEKLGSCVDAG 671 (1088)
T ss_pred EEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh-hccc----cHHHHHhhcchhH--------HHHhcccccchh
Confidence 777888888888887766 356666666555555433 2222 1222222211000 288999999988
Q ss_pred HHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHH--------HHHHHHHHHHhhhc
Q 041183 702 KLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYK--------ELIKLYEHMVATAK 759 (760)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 759 (760)
++.+ -.|+.-.+++ +...+...-||-...++- -|.++|.+.|+.||
T Consensus 672 di~e---tpG~r~r~~R---------Dr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~er 725 (1088)
T KOG4318|consen 672 DITE---TPGVRCRNGR---------DRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIER 725 (1088)
T ss_pred hccc---cCcccccCCC---------ccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHH
Confidence 8766 3444444443 222222333444333321 15558888888775
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=5.1e-13 Score=138.37 Aligned_cols=574 Identities=12% Similarity=0.040 Sum_probs=375.0
Q ss_pred HHhcCChhhHHHHhhhcCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHH
Q 041183 123 YAKSGEIVSAEMCFRDCLD---LDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIH 199 (760)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~ 199 (760)
+...|+.+.|++++.+++. .....|.+|...|-.+|+.+++...+-.....+
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~------------------------- 203 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN------------------------- 203 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------------------------
Confidence 3344999999999998865 455689999999999999999988766554443
Q ss_pred HHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhh------cChhHHHHHHHHHhhCCcc
Q 041183 200 GFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAA------CDGVEAFGLFKDLRFNDFQ 273 (760)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~------~~~~~a~~~~~~m~~~~~~ 273 (760)
+.+...|-.+.......|+++.|.-+|.+..+.+...|..+.... .+...|.+.|.++.+...+
T Consensus 204 ----------p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 204 ----------PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred ----------CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 455567788888888899999999999888763333333332222 2777888888888776543
Q ss_pred CCcchHHH----HHHhhcCCCcchHHHHHHHHHHHH-cCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCC---------
Q 041183 274 INEYTMIN----LLSSVGGERILRAGKQIQAFCYKV-GFMEVVSIGNALISMYGKCGQVNDARSIFDYLIF--------- 339 (760)
Q Consensus 274 ~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 339 (760)
.|..-+.. +++.+...++.+.|.+.+...... +-..+...++.++..+.+...++.|.........
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 33333333 344455566668888777766653 3455667788888889888888888777655421
Q ss_pred -----------------CCeeeHH----HHHHHHHhcCCccHHHHHHHHHHHCCCCC--CHhhHHHHHHHhcCcCCHHHH
Q 041183 340 -----------------KDSVSWN----SMIAGYSENGFFNQALDMFCHMLEFSLIP--NGYTMASILEAVSNSKSLKQA 396 (760)
Q Consensus 340 -----------------~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a 396 (760)
++..+|. -+.-++.+....+....+.....+..+.| +...|.-+..++.+.|++.+|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 1112222 22234444455555555555555655333 556788899999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHH---HHHHHHHhcCChhHHHHHHHHHHh--
Q 041183 397 MQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHIN---ALASVLVYASCHAEALELYRTIWG-- 471 (760)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~-- 471 (760)
..++..+......-+..+|-.+..+|...|..+.|.+.++.+....+.... .|...+.+.|++++|++.+..+..
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999998766667889999999999999999999999998875554444 455778999999999999999642
Q ss_pred ------CCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcC----------------------CCCCchHHHHHHHHH
Q 041183 472 ------SCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKAR----------------------YDQDIFVESAVIDMY 523 (760)
Q Consensus 472 ------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~ 523 (760)
.+..|+..........+...|+.+.-..+...|+... ..........++.+-
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~ 593 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAR 593 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHH
Confidence 2233444444555566677788776555544444311 111122222333333
Q ss_pred HhcCCHHHHHHHHHhc--------CCCChH----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH---H-HHHHH
Q 041183 524 CKCGTIEDAKRAFRKI--------CRDSLA----GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEI---T-YLAVL 586 (760)
Q Consensus 524 ~~~~~~~~A~~~~~~~--------~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~---~-~~~l~ 586 (760)
.+.++......-...- ..-.+. .+..++.++++.+++++|+.+...+......- +.. . -...+
T Consensus 594 ~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 594 EKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred hccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 3333332222222111 011111 24557788999999999999999888753221 222 2 23345
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhc
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIPQ---LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDA--HIWQSLLSACTIY 660 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~~~~~ 660 (760)
.++...+++..|...++.+....+...+ ...|+...+.+.+.|+-.--.+++... ..+|+. ........-....
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~ 753 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVN 753 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhc
Confidence 6778899999999999999874333322 344555555555555544444444443 222322 2222222334567
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEE
Q 041183 661 GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM----------WNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHF 730 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (760)
+.+.-|+..+-++....|++|.+-..++.++.+.-. .-.+..++++..+..
T Consensus 754 ~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR------------------- 814 (895)
T KOG2076|consen 754 ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELR------------------- 814 (895)
T ss_pred cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh-------------------
Confidence 889999999999999999999988888877765321 224445555554431
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHH
Q 041183 731 YAGDSSHSQSKEIYKELIKLYEHMV 755 (760)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (760)
.-...||+..-|+|.|+++|
T Consensus 815 -----~~~~~QEa~YNigRayh~~g 834 (895)
T KOG2076|consen 815 -----RCEEKQEAFYNIGRAYHQIG 834 (895)
T ss_pred -----ccHHHHHHHHHHHHHHHHcc
Confidence 12378999999999999986
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=6.9e-12 Score=124.94 Aligned_cols=446 Identities=12% Similarity=0.055 Sum_probs=304.8
Q ss_pred CcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCC
Q 041183 210 GVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGE 289 (760)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 289 (760)
+.+..+|..-...--.+|+.+...+++++ -+..+...|+..+...|..=..+|-..
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~r------------------------gl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDR------------------------GLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHH------------------------HHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 34444445555555556666665555543 234556778888888888888888888
Q ss_pred CcchHHHHHHHHHHHHcCCCC--chhHhHHHHhhhcCCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhcCCccHHHHH
Q 041183 290 RILRAGKQIQAFCYKVGFMEV--VSIGNALISMYGKCGQVNDARSIFDYLIF---KDSVSWNSMIAGYSENGFFNQALDM 364 (760)
Q Consensus 290 ~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 364 (760)
|.+-....|....+..|++.. ..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+....+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 888888888888777776432 23555555555555555555555554421 2333444444433444555555555
Q ss_pred HHHHHHCCCCCCH-hhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCc
Q 041183 365 FCHMLEFSLIPNG-YTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNA 443 (760)
Q Consensus 365 ~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 443 (760)
|++.... .|-. ..|....+..-..|++..|..++....+.... +..++..
T Consensus 573 lqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwla-------------------------- 623 (913)
T KOG0495|consen 573 LQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLA-------------------------- 623 (913)
T ss_pred HHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHH--------------------------
Confidence 5555543 2222 22222223333344555555544444443222 3334444
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Q 041183 444 VHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMY 523 (760)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 523 (760)
-+.....+..++.|-.+|.+... ..|+...|.--+..--..++.++|.+++++.++.- +.-...|-.+.+.+
T Consensus 624 -----avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 624 -----AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIE 695 (913)
T ss_pred -----HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHH
Confidence 44444455555555555555544 34566666555555556678888888887777643 33466778888889
Q ss_pred HhcCCHHHHHHHHHhc---CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 041183 524 CKCGTIEDAKRAFRKI---CRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREAR 599 (760)
Q Consensus 524 ~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 599 (760)
-..++++.|.+.|..- ++..+..|-.|...--+.|+...|..++++..-. .| +...|...|+.-.+.|..+.|.
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHH
Confidence 9999999999988755 3456678988888888899999999999998874 56 5678888899999999999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 600 TYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
.++.++.+ .++.+...|..-|....+.++-..+.+.+++.. .|+.........+....+++.|.+.|++++..+|+
T Consensus 774 ~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 774 LLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 99999987 577788889999999989999888888888876 45566677778888889999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEEC
Q 041183 680 NESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVG 724 (760)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 724 (760)
+..+|..+...+.+.|.-++-.+++.+.... .|..|..|..++
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 9999999999999999999999998877543 455666665444
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2e-13 Score=129.62 Aligned_cols=271 Identities=14% Similarity=0.081 Sum_probs=199.7
Q ss_pred HHHhcCChHHHHHHHhhcCCCCcccHHHHH-----HHHHh-cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCH
Q 041183 421 TYGKCNALNESKRVLSEIDKKNAVHINALA-----SVLVY-ASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDL 494 (760)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 494 (760)
.+.+.|+++.|.+++.-+.+.|..+-.+.. --|.+ ..++..|...-+...... +-+......--......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 356677777777777766655433322211 11222 234555555544443211 11222222222234567899
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 041183 495 EQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMS 571 (760)
Q Consensus 495 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 571 (760)
++|.+.+++.......-....|+ +.-.+-..|++++|++.|-++. ..+......+...|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999999988755322233333 3445678899999999997763 5677777788889999999999999997776
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHH
Q 041183 572 KFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDAHI 649 (760)
Q Consensus 572 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 649 (760)
. +.| |...+..|...|-+.|+-..|.+.+-.-.+ -++.+..+...|..-|....-+++|+.+|++.. +.|+..-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 566 668888899999999999999988766554 466688999999999999999999999999984 8999999
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 041183 650 WQSLLSACT-IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMW 697 (760)
Q Consensus 650 ~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 697 (760)
|..++..|. +.|++.+|.++|+.+.+..|.+...+..|.+++...|.-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999998875 579999999999999999999999999999999988864
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.2e-11 Score=123.24 Aligned_cols=423 Identities=13% Similarity=0.069 Sum_probs=335.0
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhcCCccHHHHH
Q 041183 288 GERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL---IFKDSVSWNSMIAGYSENGFFNQALDM 364 (760)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~ 364 (760)
...+.+.|+.++....+-- +.+.. |..+|.+...++.|.++++.. +..+...|.+-...=-.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444455666666655432 22223 344566677888888888776 445777887777766778888888777
Q ss_pred HHH----HHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhc
Q 041183 365 FCH----MLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLD--DSMISCLITTYGKCNALNESKRVLSEI 438 (760)
Q Consensus 365 ~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (760)
+.+ +...|+..+...|..=...|-..|.+-.+..+....+..|+.-. ..++..-.+.|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 665 44568888888888888888889999999999888888776532 367778888899999999999998877
Q ss_pred CCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchH
Q 041183 439 DKK---NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFV 515 (760)
Q Consensus 439 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 515 (760)
.+- +...|......--..|..++-..+|++....- +-....|.+.....-..|++..|..++..+.+... .+...
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHH
Confidence 653 45667777777777888899999999988763 33455666667777788999999999999999763 47888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKIC--RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHA 592 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 592 (760)
|-.-+.......+++.|..+|.+.. .+....|..-+....-.++.++|++++++..+ .-|+. ..|..+...+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHH
Confidence 8888999999999999999998774 56777888777777778999999999999988 57876 5566667889999
Q ss_pred CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041183 593 GLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM--PIPPDAHIWQSLLSACTIYGNIDLGLLAG 670 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 670 (760)
++.+.|...|..-.+ .++..+..|-.|...=.+.|.+-.|..++++. +.+.+...|...+..-.+.|+.+.|..+.
T Consensus 699 ~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887766 45666778888888888999999999999988 46678889999999999999999999999
Q ss_pred HHHhccCCC------------------------------CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeE
Q 041183 671 SKLLELQPD------------------------------NESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSW 720 (760)
Q Consensus 671 ~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 720 (760)
.++++--|. |+......+..+....++++|++.|++..+.+...-..|.|
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 999885552 67788888999999999999999999998877655555554
Q ss_pred E
Q 041183 721 I 721 (760)
Q Consensus 721 ~ 721 (760)
+
T Consensus 857 f 857 (913)
T KOG0495|consen 857 F 857 (913)
T ss_pred H
Confidence 4
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.3e-13 Score=130.98 Aligned_cols=423 Identities=12% Similarity=0.080 Sum_probs=278.7
Q ss_pred HhhcCCCcchHHHHHHHHHHHHcCCCCchhH-hHHHHhhhcCCChHHHHHHHhcCCC--C--C----eeeHHHHHHHHHh
Q 041183 284 SSVGGERILRAGKQIQAFCYKVGFMEVVSIG-NALISMYGKCGQVNDARSIFDYLIF--K--D----SVSWNSMIAGYSE 354 (760)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~--~----~~~~~~li~~~~~ 354 (760)
.-+.......+|...++.+++...-|+.... ..+...+.+...+.+|++.++.... | + ....+.+...+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 3344455566666667766666655555433 2344556677777777777765421 1 1 1233444445667
Q ss_pred cCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCC------------hhHHHHHH---
Q 041183 355 NGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLD------------DSMISCLI--- 419 (760)
Q Consensus 355 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~--- 419 (760)
.|.++.|+..|+...+. .|+..+--.|+-++...|+.+...+.|..|+.....|| ....+--+
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 78888888888776664 57766655566666667777777777777765432222 22222111
Q ss_pred --HHHHhcCC--hHHHHHHHhhcC----CCCcc-------------cHH--------HHHHHHHhcCChhHHHHHHHHHH
Q 041183 420 --TTYGKCNA--LNESKRVLSEID----KKNAV-------------HIN--------ALASVLVYASCHAEALELYRTIW 470 (760)
Q Consensus 420 --~~~~~~~~--~~~A~~~~~~~~----~~~~~-------------~~~--------~l~~~~~~~~~~~~A~~~~~~m~ 470 (760)
.-..+.++ .++++-.--++. .++-. .+. .-...|.++|+++.|+++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111 122221111121 22110 000 11235789999999999999887
Q ss_pred hCCCCCChhHHHHHH--HHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHH
Q 041183 471 GSCREVNGSTFSIVL--KACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWN 548 (760)
Q Consensus 471 ~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 548 (760)
+..-+.-+..-+.|- .-...-.++..|.++-+..+... ..++.....-.+.....|++++|.+.+++....|...-.
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 665443333333322 22223446777777777666543 233333333344455689999999999999888776544
Q ss_pred HHH---HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHh
Q 041183 549 AMM---MGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLL 625 (760)
Q Consensus 549 ~l~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 625 (760)
.|. ..+-..|+.++|+..|-++..- +..+...+..+...|....+...|++++..... -++.|+.+...|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 443 3466789999999999887663 334667777788889999999999999998876 4666889999999999
Q ss_pred hhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHH
Q 041183 626 GRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKL 703 (760)
Q Consensus 626 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (760)
-+.|+..+|.+.+-+- . ++.+..+..-|..-|....-+++|+.+|+++--+.|+.......++.++.+.|++.+|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999886554 3 6678888888888888888999999999999999996666666677888899999999999
Q ss_pred HHHHHhCCC
Q 041183 704 RKEMKEKFL 712 (760)
Q Consensus 704 ~~~~~~~~~ 712 (760)
++...++..
T Consensus 683 yk~~hrkfp 691 (840)
T KOG2003|consen 683 YKDIHRKFP 691 (840)
T ss_pred HHHHHHhCc
Confidence 999887643
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=2e-15 Score=148.44 Aligned_cols=255 Identities=17% Similarity=0.185 Sum_probs=113.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCC
Q 041183 450 ASVLVYASCHAEALELYRTIWGSCREVNG-STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGT 528 (760)
Q Consensus 450 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 528 (760)
...+.+.|++++|++++++.......|+. ..|..+...+...++.+.|...++++...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 44455666666666666544333322333 3344444555667788888888888877653 356667777776 68888
Q ss_pred HHHHHHHHHhcC--CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 041183 529 IEDAKRAFRKIC--RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG-VKPDEITYLAVLTSCCHAGLVREARTYLSCM 605 (760)
Q Consensus 529 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 605 (760)
+++|..++.... .++...+..++..+.+.++++++.++++++.... ..++...|..+...+.+.|+.++|++.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887663 3455667778888899999999999999977643 2346677777888899999999999999999
Q ss_pred hhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 041183 606 SDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 606 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
.+ ..| |......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|+..++++....|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 88 455 57788899999999999999888887763 3566678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 683 TYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+...++.++...|+.++|..+.++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887653
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.3e-12 Score=122.27 Aligned_cols=214 Identities=15% Similarity=0.091 Sum_probs=177.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHH
Q 041183 489 AAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSN 565 (760)
Q Consensus 489 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 565 (760)
.-.|+.-.+..-|+..++.... +...|..+..+|....+.++....|++.. +.|..+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3467888899999999887643 33447778888999999999999998764 4566788888888888899999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 041183 566 LFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PI 643 (760)
Q Consensus 566 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 643 (760)
=|++.+. +.|+ ...|.-+..+..+.+.++++...|++.++ .++.-+..|+.....+..++++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998 7784 57787787788899999999999999998 57777899999999999999999999999977 23
Q ss_pred CCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 644 PPD---------AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 644 ~p~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.|. +.+...++-.-.+ +|+..|+.++.++++++|....+|..|+..-.++|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 3333333333333 899999999999999999999999999999999999999999999854
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.3e-13 Score=135.46 Aligned_cols=274 Identities=11% Similarity=0.021 Sum_probs=168.6
Q ss_pred ChHHHHHHHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhHHHHHHHHHhccCCHHHHHHHH
Q 041183 427 ALNESKRVLSEIDKK---NAVHINALASVLVYASCHAEALELYRTIWGSCR--EVNGSTFSIVLKACAAMTDLEQGKAIH 501 (760)
Q Consensus 427 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~ 501 (760)
+..+|...|..+++. .......+..+|...+++++|.++|+.+.+... .-+...|.+.+..+-+.-. --.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~---Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA---LSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---HHHHH
Confidence 456777777775542 223445566777777777777777777766431 1234456666654422111 11122
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 041183 502 CLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSL---AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD 578 (760)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 578 (760)
+.+.+.. +..+.+|..+.++|.-+++.+.|++.|++...-|. .+|+.+..-+.....+|.|...|+.... +.|.
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 2233322 34567777777777777777777777776653333 3566666666666777777777776654 4443
Q ss_pred H-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 041183 579 E-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLL 654 (760)
Q Consensus 579 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 654 (760)
. ..|..+...|.+.++++.|+-.|+.+.+ +.| +......++..+.+.|+.++|+++++++- .+.|+..-...+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 2 4444555667777777777777777765 444 34555666666777777777777777662 334444444555
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 655 SACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 655 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
..+...+++++|++.+++..++.|++..++..++.+|.+.|+.+.|+..|--+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5666667777777777777777777777777777777777777777776665543
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=2.6e-12 Score=132.28 Aligned_cols=274 Identities=10% Similarity=0.023 Sum_probs=204.1
Q ss_pred cCChHHHHHHHhhcCCC--CcccHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHH--HHHHHHhccCCHHHHHH
Q 041183 425 CNALNESKRVLSEIDKK--NAVHINAL-ASVLVYASCHAEALELYRTIWGSCREVNGSTFS--IVLKACAAMTDLEQGKA 499 (760)
Q Consensus 425 ~~~~~~A~~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 499 (760)
.|+++.|.+.+....+. ++..+..+ ..+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999888876553 23333333 34447899999999999999764 44443322 33567788999999999
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---H--------hHHHHHHHHHHcCCHHHHHHHHH
Q 041183 500 IHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSL---A--------GWNAMMMGYAQHGCYHEVSNLFN 568 (760)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~a~~~~~ 568 (760)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+... . .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 45678888899999999999999998888853221 1 23334444444556666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCC
Q 041183 569 KMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPD 646 (760)
Q Consensus 569 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~ 646 (760)
.+.+. .+.+......+..++...|+.++|.++++...+ .+|+.... ++.+....++.+++.+.++.. + .+.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 334667778888899999999999999988876 35555322 233334568999999988877 2 4455
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
+..+.++...|...+++++|.+.|+++++..| +...+..++.++.+.|+.++|..++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66788889999999999999999999999999 56777889999999999999999988754
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.3e-12 Score=133.47 Aligned_cols=116 Identities=10% Similarity=0.009 Sum_probs=50.4
Q ss_pred hcCChHHHHHHHhhcCCCCc--c-cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 041183 424 KCNALNESKRVLSEIDKKNA--V-HINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAI 500 (760)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~~--~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 500 (760)
..|+++.|.+.+.+..+..+ . .+-....+..+.|+++.|.+.+.+..+....+....-......+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555554433211 1 11222234444455555555555544322111111122223444445555555555
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 041183 501 HCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC 540 (760)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 540 (760)
++.+.+.. |-++.+...+...+...|++++|.+.+..+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555443 2234444455555555555555555554443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.5e-11 Score=116.31 Aligned_cols=358 Identities=12% Similarity=0.101 Sum_probs=177.4
Q ss_pred cCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHH--HH
Q 041183 306 GFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMA--SI 383 (760)
Q Consensus 306 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~l 383 (760)
+...|...+-.....+.+.|....|++.|......-+..|.+-+...--.-+.+. ...... |...|...+. -+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----LSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----HHHHHh-cCcccchHHHHHHH
Confidence 3344544444444455667888888888877765545555554433222222222 222221 1221221111 23
Q ss_pred HHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHH
Q 041183 384 LEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEAL 463 (760)
Q Consensus 384 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 463 (760)
..++....+.+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++.+.|+.-.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~---------------- 297 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD---------------- 297 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch----------------
Confidence 3455555677777777777888888777766666666677778888888888888765442111
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHhccCCHH-HHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 041183 464 ELYRTIWGSCREVNGSTFSIVLKACAAMTDLE-QGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRD 542 (760)
Q Consensus 464 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 542 (760)
|..+|..++-.-.....+. .|..+ .+. -+-.+.|+..+.+-|+-.++.++|...|++..+-
T Consensus 298 -------------dmdlySN~LYv~~~~skLs~LA~~v----~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 298 -------------DMDLYSNVLYVKNDKSKLSYLAQNV----SNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred -------------hHHHHhHHHHHHhhhHHHHHHHHHH----HHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 1222222221111100000 00000 000 0122334444445555555555555555544322
Q ss_pred ---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhH
Q 041183 543 ---SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEH 617 (760)
Q Consensus 543 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 617 (760)
....|+.+..-|...++...|++.|+++.+ +.| |-..|-.|.++|.-.+.+.-|+-+|+++.+ ++| |...
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRl 434 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRL 434 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHH
Confidence 223455555555555555555555555555 444 445555555555555555555555555544 333 4455
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-------cCCCCchhHHHHH
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLE-------LQPDNESTYVLLS 688 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~ 688 (760)
|.+|+.+|.+.++.++|++-|++.- ...+...+..|...+-+.++.++|.+.+++.++ .+|+...+-.-|+
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA 514 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLA 514 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 5555555555555555555555541 222334555555555555555555555555554 2232333333355
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 041183 689 NLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~ 707 (760)
.-+.+.+++++|-.+....
T Consensus 515 ~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 515 EYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHhhcchHHHHHHHHHH
Confidence 5555555555555544433
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=7.6e-12 Score=128.80 Aligned_cols=279 Identities=11% Similarity=-0.024 Sum_probs=218.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChHHHHHHHhhcCCCCccc--HH--HHHHHHHhcCChhHHHH
Q 041183 390 SKSLKQAMQVHSHIIKSGFLLDDSMISCL-ITTYGKCNALNESKRVLSEIDKKNAVH--IN--ALASVLVYASCHAEALE 464 (760)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~A~~ 464 (760)
.|+++.|++.+....+.. +++..+..+ .....+.|+++.|...+.++.+.++.. .. .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998877655442 223333333 455589999999999999987654332 22 23568899999999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc-------hHHHHHHHHHHhcCCHHHHHHHHH
Q 041183 465 LYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDI-------FVESAVIDMYCKCGTIEDAKRAFR 537 (760)
Q Consensus 465 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 537 (760)
.++++.+.. +-+...+..+...+...|+++.|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 334567888889999999999999999999997754322 133334444445566777778888
Q ss_pred hcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC
Q 041183 538 KIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ 614 (760)
Q Consensus 538 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 614 (760)
.++ +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~ 327 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDT 327 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCC
Confidence 775 357778889999999999999999999999883 4554322 34445566999999999999987 45556
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
+..+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 778889999999999999999999998 578999999999999999999999999999998754
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.5e-10 Score=111.07 Aligned_cols=286 Identities=12% Similarity=0.036 Sum_probs=218.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHHHHhcC
Q 041183 450 ASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYD--QDIFVESAVIDMYCKCG 527 (760)
Q Consensus 450 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 527 (760)
..++......+++..-.....+.|+..+...-+....+.....|++.|+.+|+++.+..+- -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455556677788888888888887766666666666667888999999999999987421 24666666553332222
Q ss_pred CHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 041183 528 TIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMS 606 (760)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (760)
++.--....-.+.+--+.|...+..-|.-.++.++|...|++..+ +.|.. ..++.+..-|....+...|.+.++.+.
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222222222233344556777788888889999999999999999 77866 455555677999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 041183 607 DLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTY 684 (760)
Q Consensus 607 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 684 (760)
+ -.+.|-..|-.|+.+|.-.+.+.=|.-+|+++. .+.|+..|.+|+..|.+.++.++|+..|+++...+.-+..++
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 8 344578999999999999999999999999983 566889999999999999999999999999999887788999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 041183 685 VLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATA 758 (760)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (760)
..|+.+|.+.++.++|..++++-.+.... ..-..|..-++..=|++.+.+++|..
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~-------------------eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSEL-------------------EGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------------------hcccchHHHHHHHHHHHHHHhhcchH
Confidence 99999999999999999999987653200 00113555666666777777777654
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=6e-14 Score=138.02 Aligned_cols=248 Identities=15% Similarity=0.135 Sum_probs=118.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcC
Q 041183 483 IVLKACAAMTDLEQGKAIHCLALKAR-YDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRD---SLAGWNAMMMGYAQHG 558 (760)
Q Consensus 483 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 558 (760)
.+...+...|++++|.++++...... .+.+...|..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45777889999999999997655544 3456777777888888899999999999998643 34456677776 6889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 041183 559 CYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTI 638 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (760)
++++|.+++.+..+. .++...+..++..+...++++++..+++.+......+.+...|..++..+.+.|++++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887764 356666777888899999999999999998764445678888999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 041183 639 DQM-PIPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEP 716 (760)
Q Consensus 639 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (760)
+++ ...| |......++..+...|+.+++.++++...+..|+++..+..++.+|...|+.++|+.++++..+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------ 243 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL------ 243 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc------
Confidence 998 3344 68889999999999999999999999999988999999999999999999999999999998866
Q ss_pred ceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 717 GYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
+|+...+...++.++.+.|+.++
T Consensus 244 --------------------~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 244 --------------------NPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp --------------------STT-HHHHHHHHHHHT-------
T ss_pred --------------------ccccccccccccccccccccccc
Confidence 78888999999999999888764
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.6e-12 Score=128.09 Aligned_cols=279 Identities=13% Similarity=0.093 Sum_probs=213.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------CcccHHHHHHHHHhcCChhHHHHH
Q 041183 392 SLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK------NAVHINALASVLVYASCHAEALEL 465 (760)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 465 (760)
+..+|...|+.+..+ +.-+..+...+..+|...+++++|.++|+.+.+. +...|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456677777763333 3334466667778888888888888888887753 33445444433322 112222
Q ss_pred H-HHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 041183 466 Y-RTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSL 544 (760)
Q Consensus 466 ~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 544 (760)
+ +.+.+. -+..+.+|..+..+|.-.++.+.|++.|++.+..+ +-...+|+.+..-+.....+|.|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 222222 24567799999999999999999999999998865 23789999999999999999999999999887777
Q ss_pred HhH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHH
Q 041183 545 AGW---NAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYAC 620 (760)
Q Consensus 545 ~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 620 (760)
..| --+...|.+.++++.|.-.|+++.+ +.| +.+....+...+.+.|+.++|+++++++.. --+.|+..--.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHH
Confidence 655 4577889999999999999999998 788 557777788889999999999999999986 22335555566
Q ss_pred HHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 621 IVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
-+..+...+++++|+..+++++ .+.+...+..++..|.+.|+.+.|+..|--|.+++|.-.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 7778888999999999999995 444566788888999999999999999999999999643
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=6.4e-11 Score=122.73 Aligned_cols=280 Identities=10% Similarity=-0.060 Sum_probs=168.4
Q ss_pred cCcCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHHhhcCCC--Ccc--cHHHHHHHHHhcCChhHH
Q 041183 388 SNSKSLKQAMQVHSHIIKSGFLLDDS-MISCLITTYGKCNALNESKRVLSEIDKK--NAV--HINALASVLVYASCHAEA 462 (760)
Q Consensus 388 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~--~~~~l~~~~~~~~~~~~A 462 (760)
...|+++.|.+.+....+.. |++. .+-....+....|+.+.|.+.+.+..+. +.. ..-.....+...|++++|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 56799999999998876653 4433 3344567788899999999999987543 332 233357888899999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHH-HHHHH---Hhc----CCHHHHHH
Q 041183 463 LELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESA-VIDMY---CKC----GTIEDAKR 534 (760)
Q Consensus 463 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~---~~~----~~~~~A~~ 534 (760)
...++.+.+..+ -+...+..+...+...|+++.+.+.+..+.+.+.. +...+.. -..++ ... ...+...+
T Consensus 173 l~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998752 24467888899999999999999999999998753 3332221 11111 111 11222222
Q ss_pred HHHhcCC---CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC
Q 041183 535 AFRKICR---DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGL 611 (760)
Q Consensus 535 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (760)
.+...+. .+...+..++..+...|+.++|.+++++..+. .||.....
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~---------------------------- 300 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAIS---------------------------- 300 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccch----------------------------
Confidence 3333221 24444444555555555555555555555542 23322100
Q ss_pred CCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCchhHH
Q 041183 612 IPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPP-DA--HIWQSLLSACTIYGNIDLGLLAGS--KLLELQPDNESTYV 685 (760)
Q Consensus 612 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~ 685 (760)
............++.+.+.+.++.. +..| |+ ....++.+.+.+.|++++|.+.|+ .+.+..| ++..+.
T Consensus 301 -----~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~ 374 (409)
T TIGR00540 301 -----LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLA 374 (409)
T ss_pred -----hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHH
Confidence 0000111111223444444444443 1122 23 455667777777777777777777 4555666 444466
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 041183 686 LLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
+++.++.+.|+.++|.+++++.
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777764
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=6e-09 Score=100.49 Aligned_cols=410 Identities=11% Similarity=0.078 Sum_probs=260.8
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC--CCCCeeeHHHHHHHHHhcCCccHHHHHHHHH
Q 041183 291 ILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL--IFKDSVSWNSMIAGYSENGFFNQALDMFCHM 368 (760)
Q Consensus 291 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 368 (760)
++..|+++|+... ...|+...|++.|..-.+-..++.|..++++. ..|++.+|--...-=.+.|....+..+|...
T Consensus 156 Ni~gaRqiferW~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 156 NIAGARQIFERWM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred ccHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344444443332 23455555566666666666666666666654 4566666666666666667777777776666
Q ss_pred HHCCCCCCH----hhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHH--------
Q 041183 369 LEFSLIPNG----YTMASILEAVSNSKSLKQAMQVHSHIIKSGFLL-DDSMISCLITTYGKCNALNESKRVL-------- 435 (760)
Q Consensus 369 ~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~-------- 435 (760)
.+. ..|. ..|.+....=.+...++.|.-+|+-.+++-... ....|..+...--+-|+.....+.+
T Consensus 234 ie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 234 IEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 543 1122 223333333344556777777777766652221 1344444444444455544444332
Q ss_pred hhcCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-h------HHH---HHHHHHhccCCHHHHHHHHH
Q 041183 436 SEIDKKN---AVHINALASVLVYASCHAEALELYRTIWGSCREVNG-S------TFS---IVLKACAAMTDLEQGKAIHC 502 (760)
Q Consensus 436 ~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~------~~~---~ll~~~~~~~~~~~a~~~~~ 502 (760)
+.+.+.| -.+|-..+..--..|+.+...++|++.+..- +|-. . .|. ..+-.-....|++.+.++++
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2233333 3456666777777899999999999988753 3322 1 121 11222245789999999999
Q ss_pred HHHHcCCCCCchHHHHH----HHHHHhcCCHHHHHHHHHhcC--CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 041183 503 LALKARYDQDIFVESAV----IDMYCKCGTIEDAKRAFRKIC--RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVK 576 (760)
Q Consensus 503 ~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 576 (760)
..++. +|....|+..+ .+-..++.++..|.+++.... -|...+|...|..-.+.++++.+..+|++..+ ..
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cC
Confidence 99883 34455555544 333457889999999998875 56667888888888899999999999999999 56
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 041183 577 P-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAHIWQSLL 654 (760)
Q Consensus 577 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 654 (760)
| |..++......-...|+.+.|..+|..+.....+......|.+.|+.=...|.++.|..+++++ ...+....|.++.
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 7 6688887777777899999999999999884444445567888888888999999999999988 3566677888776
Q ss_pred HHHH-----hcC-----------ChhHHHHHHHHHhcc----CCCC--chhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 655 SACT-----IYG-----------NIDLGLLAGSKLLEL----QPDN--ESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 655 ~~~~-----~~~-----------~~~~A~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.--. +.+ ....|..+|+++... +|.. ...+...-..-...|...+-..+-.+|.
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 6543 333 556788888888773 3321 1222233333344565555555555544
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.5e-10 Score=110.25 Aligned_cols=253 Identities=12% Similarity=0.042 Sum_probs=185.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHH
Q 041183 451 SVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIE 530 (760)
Q Consensus 451 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 530 (760)
.-+...+++.+..++++...+.. ++....+..=|.++...|+..+-..+-..+++.- |..+.+|-++.--|.-.|+..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 33444555555555555554432 3344444444556666676666666666666543 456788888888888889999
Q ss_pred HHHHHHHhcCCCCh---HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 041183 531 DAKRAFRKICRDSL---AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMS 606 (760)
Q Consensus 531 ~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (760)
+|++.|.+...-|. ..|-.+..+|+-.|..++|+..|..+.+ +-|. ...+-.+.--|.+.++.+.|.++|..+.
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999987754333 3788888999999999999998887776 3332 2223334455778889999999999887
Q ss_pred hhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----C---C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 607 DLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-----I---P-PDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 607 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
. -.+.|+...+-+.-+....+.+.+|..+|+... . . .=.++++.|+.++.+.+.+++|+..+++++.+.
T Consensus 408 a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 A--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred h--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6 334467778888888888889999998887662 1 1 134567888889999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 678 PDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 678 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
|.++.++..++-+|...|+.+.|++.|.+..-
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999987653
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.4e-10 Score=106.14 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=134.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC----chHHHHHHHHHH
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQD----IFVESAVIDMYC 524 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 524 (760)
|..-|...|-++.|..+|..+.+.+ .--......|+..|-...+|++|.++-.++.+.+..+. ...|.-|...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 4444555666666666666665433 12233455566666666666666666666666443322 223334444444
Q ss_pred hcCCHHHHHHHHHhcCCCCh---HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 041183 525 KCGTIEDAKRAFRKICRDSL---AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTY 601 (760)
Q Consensus 525 ~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 601 (760)
...+.+.|..++.+..+.|. ..--.+...+...|+++.|++.|+...+.+..--..+...|..+|...|+.++....
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555555555555432222 222334455556666666666666666532111224455555666666666666666
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 602 LSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTI-DQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
+..+.+ ..+....-..+........-.+.|..++ +.+..+|+...+..|+......
T Consensus 272 L~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d-------------------- 328 (389)
T COG2956 272 LRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD-------------------- 328 (389)
T ss_pred HHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc--------------------
Confidence 666655 3333333333333333333333333332 2233445555444444432211
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEc
Q 041183 681 ESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYA 732 (760)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (760)
...|++++-+..++.|....++..|.+....++-.++.+.=
T Consensus 329 -----------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 329 -----------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred -----------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 12355788888889999888999999888888887777643
No 51
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.5e-07 Score=96.47 Aligned_cols=668 Identities=14% Similarity=0.116 Sum_probs=360.4
Q ss_pred hHHhhcCCCC-chhhhhHHHHhhccCChhHHHHhhhcCCC---CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC
Q 041183 5 LLIKNGHHLD-PILSTTLISHFTKFADFRRAFRFLFDTQN---RDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPD 80 (760)
Q Consensus 5 ~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 80 (760)
+|..+|--|- ..+|-.-.+.+.-.|++++|-++--..++ ++..|-+.+=..=...|.+.--+..|..+...| +.|
T Consensus 349 ~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLN 427 (1666)
T KOG0985|consen 349 RLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLN 427 (1666)
T ss_pred HhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-ccc
Confidence 3444443333 34777778888889999999888776664 355566666666667788888888888888887 444
Q ss_pred cccHHHHHHHhcCCCchhHHHHHH--------HHhcCCCCch-------------hhhHHHHHHHhcCChhhHHHHhhhc
Q 041183 81 AFTFSSLVKACGSLQENEIVHGVC--------LKLGFSSRVY-------------LVSGFIENYAKSGEIVSAEMCFRDC 139 (760)
Q Consensus 81 ~~~~~~ll~~~~~~~~~~~~~~~~--------~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~~~~~ 139 (760)
..-=-.+.+.--..+...-+..++ ++.|--..++ .-+..+.+|+.+|.++.+.-.....
T Consensus 428 k~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKv 507 (1666)
T KOG0985|consen 428 KYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKV 507 (1666)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHc
Confidence 433223333333333333222222 2333111111 1133444445555554444333222
Q ss_pred CCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHH--------------HHHhccCc-----cchhhHH
Q 041183 140 LDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLG-LELNEFSLTA--------------VLGASFDV-----KEGEQIH 199 (760)
Q Consensus 140 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~--------------ll~~~~~~-----~~~~~~~ 199 (760)
- -+.-|-.+++...+ -+++.+.+....|.+.. +..|...... ++.++-.. ....++.
T Consensus 508 G--yTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLL 584 (1666)
T KOG0985|consen 508 G--YTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLL 584 (1666)
T ss_pred C--CCccHHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHH
Confidence 1 12235556666655 67777877777776633 2223222111 11111111 1111111
Q ss_pred HHHHhhcc--------CCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCC--C-----CcchHHHHHHhhc--ChhHHHH
Q 041183 200 GFGVKVGF--------LSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITE--P-----DVVSWSERIAAAC--DGVEAFG 262 (760)
Q Consensus 200 ~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~ll~~~~--~~~~a~~ 262 (760)
+.....++ +...+..-+..+.+.|.+.|-...|++.+.++.. + ....-..++.-+. ..+++++
T Consensus 585 E~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~e 664 (1666)
T KOG0985|consen 585 EMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLE 664 (1666)
T ss_pred HHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHH
Confidence 11111111 0011111156677788899999999988887653 1 1111122333333 8899999
Q ss_pred HHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHH-----------HcCCCCchhHhHHHHhhhcCCChHHHH
Q 041183 263 LFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYK-----------VGFMEVVSIGNALISMYGKCGQVNDAR 331 (760)
Q Consensus 263 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~ 331 (760)
.++.|...+++.+..+...+..-+...=-.+...++|+.... .++..|+.+.-..|.+.++.|++.+.+
T Consensus 665 clkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvE 744 (1666)
T KOG0985|consen 665 CLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVE 744 (1666)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHH
Confidence 999999999998888877777766655445555555555432 235678888889999999999999998
Q ss_pred HHHhcCC-------------------CC-----CeeeHH-------------HHHHHHHhcCCccHHHHHHHHHHHCCCC
Q 041183 332 SIFDYLI-------------------FK-----DSVSWN-------------SMIAGYSENGFFNQALDMFCHMLEFSLI 374 (760)
Q Consensus 332 ~~~~~~~-------------------~~-----~~~~~~-------------~li~~~~~~g~~~~a~~~~~~m~~~~~~ 374 (760)
++.++-. -| |..-|- ..|..|...-++.+.-.+.-.+.+..+.
T Consensus 745 Ricresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~ 824 (1666)
T KOG0985|consen 745 RICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS 824 (1666)
T ss_pred HHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc
Confidence 8876540 01 111111 1223333322222211111111111000
Q ss_pred C-----------CHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc------------------
Q 041183 375 P-----------NGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKC------------------ 425 (760)
Q Consensus 375 p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------ 425 (760)
- .......+..-+.+.+++..-...++.....|.. ++.++|+|...|...
T Consensus 825 E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~v 903 (1666)
T KOG0985|consen 825 EDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKV 903 (1666)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhH
Confidence 0 0000111222233344444444455555555544 555555555544333
Q ss_pred ----------------------------------------------CChHHHHHHHhhcC-----------------CCC
Q 041183 426 ----------------------------------------------NALNESKRVLSEID-----------------KKN 442 (760)
Q Consensus 426 ----------------------------------------------~~~~~A~~~~~~~~-----------------~~~ 442 (760)
.+.+-..+++.+-. ..|
T Consensus 904 VGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~d 983 (1666)
T KOG0985|consen 904 VGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQD 983 (1666)
T ss_pred HhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCC
Confidence 22222222221100 013
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 041183 443 AVHINALASVLVYASCHAEALELYRTIWGSCREVNG--STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVI 520 (760)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 520 (760)
+...+..+.+++..+-+.+-+++++++.-.+..-+. ..-+.++-... ..+..++.++.+++-.... |+ +.
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa-~~------ia 1055 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDA-PD------IA 1055 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCc-hh------HH
Confidence 334444555566666666666666665432211111 11111211111 1222233333333322211 11 11
Q ss_pred HHHHhcCCHHHHHHHHHhcC-------------------------CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 041183 521 DMYCKCGTIEDAKRAFRKIC-------------------------RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGV 575 (760)
Q Consensus 521 ~~~~~~~~~~~A~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 575 (760)
......+-+++|..+|++.. -..+..|..+..+-.+.|...+|++-|-+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 22223333444544444321 012346889999999999999998877533
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 041183 576 KPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLS 655 (760)
Q Consensus 576 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 655 (760)
-|...|.-++..+.+.|.|++-.+++..+.+ ..-.|.+. ..|+-+|++.++..+-.+++ ..|+..-......
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhH
Confidence 2567899999999999999999999998887 45566554 57899999999998877776 3577777778888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 656 ACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 656 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
-|...|.++.|.-+|. +.+-|..|+..+...|++..|.+.-++
T Consensus 1203 rcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888877776 556677777777777777777655443
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=2.9e-08 Score=102.02 Aligned_cols=400 Identities=18% Similarity=0.122 Sum_probs=268.2
Q ss_pred HHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhh-
Q 041183 304 KVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYT- 379 (760)
Q Consensus 304 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~- 379 (760)
...+..|..+|..|.-++...|+++.+.+.|++...- ....|+.+...|...|.-..|..+++.-....-.|+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3456678899999999999999999999999987433 456799999999999999999999988765433354333
Q ss_pred HHHHHHHhc-CcCCHHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhc-----------CChHHHHHHHhhcCCC--
Q 041183 380 MASILEAVS-NSKSLKQAMQVHSHIIKS--GF--LLDDSMISCLITTYGKC-----------NALNESKRVLSEIDKK-- 441 (760)
Q Consensus 380 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~-- 441 (760)
+-..-+.|. +.+.++++..+-..+.+. +. ...+..+..+.-+|... ....++...+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333334443 556777777776666652 11 12333444444444332 1234566667776543
Q ss_pred -CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Q 041183 442 -NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVI 520 (760)
Q Consensus 442 -~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 520 (760)
|+.....+.--|+..++.+.|++..++..+.+..-+...|..+.-.+...+++..|+.+.+...+.-. .|-.....-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhh
Confidence 44444455566788899999999999999887778888898888888999999999999887765321 1111111111
Q ss_pred HHHHhcCCHHHHHHHHHhc--------------------------C----C--CChHhHHHHHHHHHHcCCHHHHHHHHH
Q 041183 521 DMYCKCGTIEDAKRAFRKI--------------------------C----R--DSLAGWNAMMMGYAQHGCYHEVSNLFN 568 (760)
Q Consensus 521 ~~~~~~~~~~~A~~~~~~~--------------------------~----~--~~~~~~~~l~~~~~~~~~~~~a~~~~~ 568 (760)
+.-..-++.++|......+ . + ..+.++..+...... +...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc
Confidence 1222244444444333221 0 0 011122222221111 1111000000
Q ss_pred HHHHCCCCC--CH------HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHh
Q 041183 569 KMSKFGVKP--DE------ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQ 640 (760)
Q Consensus 569 ~m~~~g~~p--~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (760)
+...-+.| +. ..+......+.+.+..++|...+.++.. ..+.....|...+..+...|++++|.+.|..
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 22212223 21 1233444667888999999999988876 3455678888888899999999999999988
Q ss_pred CC-C-CCCHHHHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 641 MP-I-PPDAHIWQSLLSACTIYGNIDLGLL--AGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 641 ~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.- . +.++.+..++...+...|+...|.. ++..+++++|.++.+|+.++.++.+.|+.++|.+-|.-..+
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 73 3 4457789999999999999999988 99999999999999999999999999999999999998655
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1e-09 Score=106.29 Aligned_cols=206 Identities=16% Similarity=0.113 Sum_probs=164.7
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 041183 523 YCKCGTIEDAKRAFRKICR---DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREA 598 (760)
Q Consensus 523 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 598 (760)
+.-.|+.-.|..-|+.... .++..|-.+...|....+.++-+..|++..+ +.| |+.+|..-.....-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 4457888888888887753 3344588888889999999999999999888 666 567777777777778889999
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 599 RTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 599 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
..-|++..+ +.| +...|-.+.-+..|.+++++++..|++.. ++.-+..|+.....+...++++.|.+.|+.+++
T Consensus 414 ~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999887 556 46778888888889999999999999883 666677888888999999999999999999999
Q ss_pred cCCC------CchhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHH
Q 041183 676 LQPD------NESTYVLLSNLYAS-AGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELI 748 (760)
Q Consensus 676 ~~p~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (760)
+.|. ++..+.+-+.+..+ .++++.|..++++..+. +|.....|..++
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------------------------Dpkce~A~~tla 544 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------------------------DPKCEQAYETLA 544 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------------------------CchHHHHHHHHH
Confidence 9998 66666655443332 37788888888887755 788888999999
Q ss_pred HHHHHHHhhhc
Q 041183 749 KLYEHMVATAK 759 (760)
Q Consensus 749 ~~~~~~~~~~~ 759 (760)
+...|.++..+
T Consensus 545 q~~lQ~~~i~e 555 (606)
T KOG0547|consen 545 QFELQRGKIDE 555 (606)
T ss_pred HHHHHHhhHHH
Confidence 99888887643
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=1.9e-07 Score=93.94 Aligned_cols=524 Identities=12% Similarity=0.122 Sum_probs=314.5
Q ss_pred chhhhHHHHHHHhcCChhhHHHHhhhcCC-----CCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041183 113 VYLVSGFIENYAKSGEIVSAEMCFRDCLD-----LDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLG 187 (760)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 187 (760)
+.+|-..++.+.++|++......|++... .....|...+...-..|-++-+..+++.-.+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~------------- 168 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA------------- 168 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-------------
Confidence 45677777777888888888888876533 233367777777777777778888888766443
Q ss_pred hccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHH
Q 041183 188 ASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDL 267 (760)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m 267 (760)
+...+--|..++..+++++|.+.+..+...+...-
T Consensus 169 -------------------------P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s-------------------- 203 (835)
T KOG2047|consen 169 -------------------------PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS-------------------- 203 (835)
T ss_pred -------------------------HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh--------------------
Confidence 22235566777888999998888887765433211
Q ss_pred hhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcC--CCC--chhHhHHHHhhhcCCChHHHHHHHhcCCCC--C
Q 041183 268 RFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGF--MEV--VSIGNALISMYGKCGQVNDARSIFDYLIFK--D 341 (760)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~ 341 (760)
...+.+...|..+-...++..+.-....+ +.+++.|+ -+| -..|.+|.+.|.+.|.++.|.+++++.... +
T Consensus 204 --k~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 204 --KKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred --hcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 01122222233332222222222221111 12222222 122 246788888888999999998888876433 3
Q ss_pred eeeHHHHHHHHHhc----------------CC------ccHHHHHHHHHHHCCC----------CC-CHhhHHHHHHHhc
Q 041183 342 SVSWNSMIAGYSEN----------------GF------FNQALDMFCHMLEFSL----------IP-NGYTMASILEAVS 388 (760)
Q Consensus 342 ~~~~~~li~~~~~~----------------g~------~~~a~~~~~~m~~~~~----------~p-~~~~~~~ll~~~~ 388 (760)
+.-|..+.++|+.- |+ ++-.+.-|+.+...+. .| +..+|..- .-.
T Consensus 281 vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l 358 (835)
T KOG2047|consen 281 VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKL 358 (835)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhh
Confidence 33344443333321 11 2223334444443321 01 11122111 122
Q ss_pred CcCCHHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHH-------HHHHhc
Q 041183 389 NSKSLKQAMQVHSHIIKSG-----FLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALA-------SVLVYA 456 (760)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~-------~~~~~~ 456 (760)
..|+..+....+.++++.- ...-...|..+...|-..|+++.|..+|++..+-+-.+.+.|. ..=.+.
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 3456777777777777531 1112356778889999999999999999998875444444444 444566
Q ss_pred CChhHHHHHHHHHHhCCCC----------C-------ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHH
Q 041183 457 SCHAEALELYRTIWGSCRE----------V-------NGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAV 519 (760)
Q Consensus 457 ~~~~~A~~~~~~m~~~~~~----------~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 519 (760)
.+++.|+++++......-. | +...|...++.-...|-++....+++++++..+ .++.+....
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 7788898888876542111 1 123455556666677889999999999998775 445544444
Q ss_pred HHHHHhcCCHHHHHHHHHhcC----CCChH-hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--H
Q 041183 520 IDMYCKCGTIEDAKRAFRKIC----RDSLA-GWNAMMMGYAQ---HGCYHEVSNLFNKMSKFGVKPDEITYLAVLTS--C 589 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~ 589 (760)
...+-...-++++.+++++-. -|++. .|+..+.-+.+ ....+.|..+|++..+ |++|...-+..|+.+ =
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 555566777899999998764 45554 67777666554 2478999999999999 677765444444433 2
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHH---HHHHHHhcCCh
Q 041183 590 CHAGLVREARTYLSCMSDLHGLIPQ--LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAHIWQS---LLSACTIYGNI 663 (760)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---l~~~~~~~~~~ 663 (760)
.+-|....|+.+++++.. ++++. ..+|+..|.-....=-+..-..+|+++ ..-|+...-.. +...-.+.|..
T Consensus 597 Ee~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH
Confidence 356888999999999876 56664 367777776544333333334444443 22344433322 22334677888
Q ss_pred hHHHHHHHHHhccC-CC-CchhHHHHHHHHHhcCChhHHHHH
Q 041183 664 DLGLLAGSKLLELQ-PD-NESTYVLLSNLYASAGMWNDVGKL 703 (760)
Q Consensus 664 ~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~ 703 (760)
+.|..+|...-++- |. +...|...-.--.+.|+-+.-++.
T Consensus 675 dRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 675 DRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888854 43 455666666666677775544443
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.3e-09 Score=100.06 Aligned_cols=281 Identities=13% Similarity=0.117 Sum_probs=207.4
Q ss_pred hcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHH
Q 041183 354 ENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLD---DSMISCLITTYGKCNALNE 430 (760)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 430 (760)
-+.++++|.++|-+|.+.. +-+..+--+|.+.+-+.|.++.|..+++.+.++.-.+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567888888888887731 12333445677778888888888888888876532221 1234456777889999999
Q ss_pred HHHHHhhcCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----HHHHHHHHHhccCCHHHHHHHHHH
Q 041183 431 SKRVLSEIDKK---NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGS----TFSIVLKACAAMTDLEQGKAIHCL 503 (760)
Q Consensus 431 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 503 (760)
|+.+|..+.+. -......|+..|-...+|++|++.-+++...+..+... .|.-+........+.++|..++++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998874 34566778999999999999999999988876655543 455666677778899999999999
Q ss_pred HHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 041183 504 ALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLA----GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE 579 (760)
Q Consensus 504 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 579 (760)
..+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.|+.++....+.++.+. .+..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 99876 345666677888999999999999999999766654 5778889999999999999999999984 4444
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh---cCChHHHHHHHHhC
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR---VGLLEGAKMTIDQM 641 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 641 (760)
..-..+...-....-.+.|...+.+-.. -.|+...+..|++.-.. .|...+....+..|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 4444444444444556677766666554 57999999999987643 34455555555555
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=8.9e-10 Score=104.44 Aligned_cols=276 Identities=12% Similarity=0.078 Sum_probs=189.2
Q ss_pred cCChHHHHHHHhhcCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHH
Q 041183 425 CNALNESKRVLSEIDKKN---AVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIH 501 (760)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 501 (760)
.|++..|++...+-.+.. ...|..-..+--+.|+.+.+-.++.+..+....++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 578888888877655432 22233334556677888888888888776544555556666667777788888888888
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------HhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041183 502 CLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSL-----------AGWNAMMMGYAQHGCYHEVSNLFNKM 570 (760)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m 570 (760)
..+.+.+ +..+.+.....++|.+.|++.....++..+.+... .+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8877766 35567777778888888888888888887754322 24666666555555555555566665
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHH
Q 041183 571 SKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM--PIPPDAH 648 (760)
Q Consensus 571 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~ 648 (760)
..+ .+.+...-..++.-+.+.|+.++|.++..+..+ ++..|+. ..++ ...+-++...-++..++. ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 543 445556666677777888888888888888777 4555551 1111 233455555544444443 1334457
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.+.+|...|.+++.+.+|...++.+++..| +...|..++.++.+.|+..+|....++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 788888888888888888888888888888 88888888888888888888888887755
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=1.3e-09 Score=103.41 Aligned_cols=280 Identities=13% Similarity=-0.007 Sum_probs=225.7
Q ss_pred CcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC--C--cccHHHHHHHHHhcCChhHHHH
Q 041183 389 NSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK--N--AVHINALASVLVYASCHAEALE 464 (760)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~ 464 (760)
..|++..|++....-.+++-.| ...|..-.++-...|+.+.+-..+.+..+. | ....-.........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3689999999999877776553 334445567788899999999999998875 3 3344555677889999999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc-------hHHHHHHHHHHhcCCHHHHHHHHH
Q 041183 465 LYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDI-------FVESAVIDMYCKCGTIEDAKRAFR 537 (760)
Q Consensus 465 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 537 (760)
-+.++.+.+.. ..........+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999887643 4556788889999999999999999999998865443 456666666666666666667777
Q ss_pred hcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC
Q 041183 538 KIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ 614 (760)
Q Consensus 538 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 614 (760)
..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ...-.+.+.++...-++..+...+. .+-+
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~ 327 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ--HPED 327 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh--CCCC
Confidence 775 456777788888999999999999999999998887772 2233577888888888888888774 4444
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
+..+.+|+..|.+.+.|.+|.+.|+.. +..|+..+|+-+..++.+.|+.++|.+..++++.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 578899999999999999999999977 58899999999999999999999999999999864
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.8e-10 Score=110.85 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=164.4
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLT 587 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 587 (760)
....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+. .| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 35667778888899999999999998764 334567888889999999999999999999884 34 4566777788
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDL 665 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 665 (760)
.+...|++++|.+.++.+.+....+.....+..+..++...|++++|...+++.- .+.+...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999998722223345677888899999999999999999872 34456788889999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 666 GLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 666 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|...++++.+..|+++..+..++.++...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888999999999999999999999998887653
No 59
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.2e-07 Score=99.84 Aligned_cols=613 Identities=12% Similarity=0.096 Sum_probs=331.1
Q ss_pred hhhHHHHhhccCChhHHHHhhhcCCC--CCcchHHH----HHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 041183 18 STTLISHFTKFADFRRAFRFLFDTQN--RDIITYNA----LISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKAC 91 (760)
Q Consensus 18 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~----ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 91 (760)
+..+...|.+.|-+.+|++-+..+.. +.+++-+. -+..+...-..+++++++..|...+++-+..+.-.+-.-+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55667788899999999998887752 22221111 2345555667888999999998887766655444443333
Q ss_pred cCCCchh---HHHHHHH-----------HhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC---------------C
Q 041183 92 GSLQENE---IVHGVCL-----------KLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD---------------L 142 (760)
Q Consensus 92 ~~~~~~~---~~~~~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~ 142 (760)
+..=... ++++..+ -.++..|+.+.-..|++-|+.|++.+.+++-++-.- +
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 2222222 2222211 114677888888889999999999888887654210 1
Q ss_pred C---------cee---------HH----HHHHHHHhcCChhHHHH-------------HHHHH--HHCCCCCChhhHHHH
Q 041183 143 D---------NVA---------YT----AMVCGYVWNGEFDKSKE-------------VFVEM--RSLGLELNEFSLTAV 185 (760)
Q Consensus 143 ~---------~~~---------~~----~li~~~~~~g~~~~A~~-------------~~~~m--~~~g~~p~~~t~~~l 185 (760)
| .+- |. ..|..|.+.=++.+.-. +.+.+ .-.|.-| ...+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~deL 844 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDEL 844 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHHH
Confidence 1 111 11 12233333322222111 11111 1123222 2233
Q ss_pred HHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhc---ChhHHH-
Q 041183 186 LGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAAC---DGVEAF- 261 (760)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~---~~~~a~- 261 (760)
+.-+......+-+..++...-..+..++.++|+|...|..+++-.+ ..+++ +...-+..+..|| ++.-|.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEE
Confidence 3333333223333333333333336788899999999987654322 12222 1111122233333 111110
Q ss_pred ------------------HHHHHHhhC-CccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCC--CCchhHhHHHHh
Q 041183 262 ------------------GLFKDLRFN-DFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFM--EVVSIGNALISM 320 (760)
Q Consensus 262 ------------------~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 320 (760)
.+|+...+- --+.|...|..++. ..-.--+++.++.++.+++ .|+.-....+.+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkA 993 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKA 993 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHH
Confidence 011110000 01223333433332 1112234555666665543 455666777788
Q ss_pred hhcCCChHHHHHHHhcC-CCCCee-----eHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHH
Q 041183 321 YGKCGQVNDARSIFDYL-IFKDSV-----SWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLK 394 (760)
Q Consensus 321 ~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 394 (760)
+...+-..+-+++++++ ..+++. .-|.||-...+. +..+..+..+++-.-. .| .+...+...+-++
T Consensus 994 fMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 994 FMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DIAEIAIENQLYE 1065 (1666)
T ss_pred HHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHH
Confidence 88888888888888887 333332 234444444443 4455666666654321 12 2344555667788
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 395 QAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCR 474 (760)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 474 (760)
+|..+|+.. ..+....+.|++ .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1066 EAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1066 EAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 888888764 234444444543 346778888877777654 57889999999999999998877543
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHH
Q 041183 475 EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGY 554 (760)
Q Consensus 475 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 554 (760)
.|+..|.-++..+.+.|.++.-.+++...++..-+|.. -+.|+-+|++.+++.+.++++ ..||......+.+-|
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRC 1204 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHH
Confidence 46778999999999999999999999888887655544 457888999999988877765 345555555566666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHH
Q 041183 555 AQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 634 (760)
...|.++.|.-+|.. ...|..|...+...|++..|...-+++ .+..+|..+..+|...+.+.-|
T Consensus 1205 f~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH
Confidence 666666666555442 223444555555555555554433322 2234444444444444333222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 635 KMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 635 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
. +..+.+--...-..-|+.-|...|-+++-+.+++..+.+..-....+..|+..|.
T Consensus 1269 Q--iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1269 Q--ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred H--hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 1 0111111222333444444555555555555555554444434444444444333
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.2e-08 Score=96.68 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=64.7
Q ss_pred CCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHHH
Q 041183 289 ERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDMF 365 (760)
Q Consensus 289 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 365 (760)
.++...|+.+++..+... ..+...|-..+.+-.+...+..|..+|++.+.. -...|.-.+..=-..|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 344444555555444333 223334444444444455555555555444211 1112222222223344555555555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 041183 366 CHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEI 438 (760)
Q Consensus 366 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (760)
+.-.+ ..|+...|.+.++.=.+.+..+.|..+++..+-. .|++..|-.....-.+.|....|..+|+..
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 54443 3455555555555555555555555555444422 244444444444444455555555444443
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=9.2e-09 Score=95.46 Aligned_cols=343 Identities=13% Similarity=0.088 Sum_probs=188.7
Q ss_pred HHhhhcCCChHHHHHHHhcCCCCC--eeeHHH-HHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHH
Q 041183 318 ISMYGKCGQVNDARSIFDYLIFKD--SVSWNS-MIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLK 394 (760)
Q Consensus 318 i~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 394 (760)
.......-.+.+|++++.+....+ -...|. +.-+|.+..-++-+.++++...+. ++.++...+.......+.=+-.
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr 236 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGR 236 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccc
Confidence 333333446788888888774433 223332 344667777788888888877664 2223333343333333332333
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHh-----cCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 395 QAMQVHSHIIKSGFLLDDSMISCLITTYGK-----CNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTI 469 (760)
Q Consensus 395 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 469 (760)
.|++-...+.+.+-.. |- .+.-.++ -..-+.|++++-.+.+.-+..--.|+--|.+.+++++|..+.+++
T Consensus 237 ~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 237 TAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred hhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc
Confidence 3333333333322110 00 1111111 122234444443333322222223333444555555555554444
Q ss_pred HhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh
Q 041183 470 WGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR-----DSL 544 (760)
Q Consensus 470 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~ 544 (760)
. |+.. +..++.+ .++..+.+-......+.-|.+.|...-. ..+
T Consensus 312 ~-----PttP-~EyilKg--------------------------vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 312 D-----PTTP-YEYILKG--------------------------VVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred C-----CCCh-HHHHHHH--------------------------HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 1 1110 1111111 0111111111122234455666654422 233
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHH-HHHHH
Q 041183 545 AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHY-ACIVD 623 (760)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~ 623 (760)
....++...+.-..++++++..++.+..--...|...|+ +..+.+..|.+.+|.++|-.+.. ..++ |..+| ..|..
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LAr 436 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLAR 436 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHH
Confidence 456777777777888999999888887753334444444 67899999999999999998876 2333 44455 55678
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHH
Q 041183 624 LLGRVGLLEGAKMTIDQMPIPPDAHIWQSLL-SACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 702 (760)
+|.+.++++.|++++-++..+.+..+...+| .-|.+.+.+--|-..|..+..++| ++.-|. |+......
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG 506 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAG 506 (557)
T ss_pred HHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHH
Confidence 9999999999999999987455555554444 558899999999999999999998 665553 34444445
Q ss_pred HHHHHHhCC
Q 041183 703 LRKEMKEKF 711 (760)
Q Consensus 703 ~~~~~~~~~ 711 (760)
+|..+....
T Consensus 507 ~f~~l~~~~ 515 (557)
T KOG3785|consen 507 LFRQLANHK 515 (557)
T ss_pred HHHHHHcCC
Confidence 555554433
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-07 Score=94.85 Aligned_cols=363 Identities=14% Similarity=0.084 Sum_probs=198.6
Q ss_pred cCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHh-hHHHHHHHhcCcCCHHHHHHHHH
Q 041183 323 KCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGY-TMASILEAVSNSKSLKQAMQVHS 401 (760)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 401 (760)
+.+..++|...++.....+..+...-...+.+.|++++|+.+|+.+.+.+..-... .-..++.+-... . .+
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQ 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HH
Confidence 45666666666664444444444555556666777777777777766553221111 111111111000 0 00
Q ss_pred HHHHhCCCCChhHHHHH---HHHHHhcCChHHHHHHHhhcC--------CCCc----------ccHHHHHHHHHhcCChh
Q 041183 402 HIIKSGFLLDDSMISCL---ITTYGKCNALNESKRVLSEID--------KKNA----------VHINALASVLVYASCHA 460 (760)
Q Consensus 402 ~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~ 460 (760)
.+......| ..+|..+ .-.+...|++..|+++++... ..|. ..--.+..++...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111112222 2233322 234455677777777776651 1111 11234556777889999
Q ss_pred HHHHHHHHHHhCCCCCChhHH----HHHHHHHhccCCHHH--HHHHH------------HHHHHcCCCCCchHHHHHHHH
Q 041183 461 EALELYRTIWGSCREVNGSTF----SIVLKACAAMTDLEQ--GKAIH------------CLALKARYDQDIFVESAVIDM 522 (760)
Q Consensus 461 ~A~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~~~--a~~~~------------~~~~~~~~~~~~~~~~~l~~~ 522 (760)
+|..++...+.... +|.... |.++ +.....++-. +...+ ..+.... .-....-+.++..
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l 318 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999888753 343222 2222 2222111111 11111 1111110 0001111222222
Q ss_pred HHhcCCHHHHHHHHHhcCCCC-hHhHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHH
Q 041183 523 YCKCGTIEDAKRAFRKICRDS-LAGWNAMMMGYA--QHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSCCHAGLVRE 597 (760)
Q Consensus 523 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~ 597 (760)
-.+..+.+.++...++... ...+..++.... +...+..+.+++...-+. .|.. ......+......|+++.
T Consensus 319 --~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 --FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred --HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 3455566666666665433 223444444332 233577888888877763 4544 344445566788999999
Q ss_pred HHHHHH--------HhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHH----HHHHHHHHHHhc
Q 041183 598 ARTYLS--------CMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-----IPPDAH----IWQSLLSACTIY 660 (760)
Q Consensus 598 A~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~l~~~~~~~ 660 (760)
|.+++. .+.+ +...+.+...++..+.+.++.+.|..++.+.- ..+... +|.-+...-.++
T Consensus 395 A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999999 4444 33345567778888999888777777776551 122223 333344444677
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHH
Q 041183 661 GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
|+-++|..+++++++.+|++......++.+|+.. +.+.|..+=+
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 9999999999999999999999999999999875 4556666543
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1e-07 Score=90.73 Aligned_cols=271 Identities=11% Similarity=0.063 Sum_probs=182.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 041183 407 GFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHI---NALASVLVYASCHAEALELYRTIWGSCREVNGSTFSI 483 (760)
Q Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 483 (760)
-++.|......+..++...|+.++|...|++...-|+.+. ......+.+.|+.+....+...+.... .-+...|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3556677778888888888888888888887765544433 233445567777777777776665432 111222222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCH
Q 041183 484 VLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCY 560 (760)
Q Consensus 484 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 560 (760)
-.......++++.|..+-.+.++.. +.+...|..-...+...|+.++|.-.|+... +-+..+|..|+.+|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 2333345667777887777777654 2345555555667777888888888887654 34667888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHH
Q 041183 561 HEVSNLFNKMSKFGVKPDEITYLAVL-TSCC-HAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMT 637 (760)
Q Consensus 561 ~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 637 (760)
.+|...-+..... +..+..+...+. ..|. ...--++|.++++...+ +.|+ ....+.+...+...|+.++++.+
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 8888777766553 233445555442 2222 22234677778777765 5554 45566777778888888888888
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 041183 638 IDQM-PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNEST 683 (760)
Q Consensus 638 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 683 (760)
+++. ...||....+.|...+...+.+++|+..|..++.++|++..+
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 8876 467888888888888888888888888888888888866433
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.4e-08 Score=100.47 Aligned_cols=277 Identities=12% Similarity=0.014 Sum_probs=184.4
Q ss_pred eeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 041183 342 SVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITT 421 (760)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 421 (760)
+........-+...+++.+..++.+...+. .++....+..-|.++...|+...-..+=..+++. .+..+.+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 333444445555666677777777666654 2334444444455556666655555554555543 23355667777777
Q ss_pred HHhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHH
Q 041183 422 YGKCNALNESKRVLSEIDKKN---AVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGK 498 (760)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 498 (760)
|.-.|+..+|.+.|.+...-| ...|-.+..+|+-.|..++|+..+...-+.-. -...-+-.+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHH
Confidence 777788888888877665433 45677788888888888888877776654311 11112223344567788888888
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC---------C-ChHhHHHHHHHHHHcCCHHHHHHHHH
Q 041183 499 AIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR---------D-SLAGWNAMMMGYAQHGCYHEVSNLFN 568 (760)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 568 (760)
++|....... |.|+.+.+-+.-.....+.+.+|..+|..... + -..+++.|..+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 8888887765 46777888877777778888888888876531 0 12357778888888888888888888
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh
Q 041183 569 KMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR 627 (760)
Q Consensus 569 ~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 627 (760)
+... ..| |..++.++.-.+...|+++.|...|.+... +.|+..+-..++..+..
T Consensus 480 ~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHHHHHH
Confidence 8877 455 667788888888888888888888888865 77877666666655543
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1e-11 Score=84.55 Aligned_cols=50 Identities=36% Similarity=0.710 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcC
Q 041183 44 RDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGS 93 (760)
Q Consensus 44 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 93 (760)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999875
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=1.9e-09 Score=103.66 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=141.4
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 041183 544 LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIV 622 (760)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 622 (760)
...+..+...+...|++++|.+.++++.+. .|+ ...+..+...+...|++++|.+.++...+ ..+.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 346777889999999999999999999874 464 56777788899999999999999999987 2344567788899
Q ss_pred HHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChh
Q 041183 623 DLLGRVGLLEGAKMTIDQMP----IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWN 698 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 698 (760)
..+...|++++|.+.++++. .+.....+..+...+...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999873 22345577788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 041183 699 DVGKLRKEMKEK 710 (760)
Q Consensus 699 ~A~~~~~~~~~~ 710 (760)
+|..++++..+.
T Consensus 187 ~A~~~~~~~~~~ 198 (234)
T TIGR02521 187 DARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=1.2e-06 Score=88.31 Aligned_cols=143 Identities=10% Similarity=0.082 Sum_probs=91.1
Q ss_pred CchhhhHHHHHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCChhhHHHH
Q 041183 112 RVYLVSGFIENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLG------LELNEFSLTAV 185 (760)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~l 185 (760)
-..+|...+......|-++.+..++++...-+...-+--|..++..+++++|-+.+....... .+.+...|..+
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 345666667767777778888888888777665667778888899999999988888765321 22333444444
Q ss_pred HHhccCc---cchhhHHHHHHhhccCC--CcchhHHHHHHHHhHhcCCHHHHHHHhccCCC--CCcchHHHHHHhhc
Q 041183 186 LGASFDV---KEGEQIHGFGVKVGFLS--GVCNHLNNAIMNLYVRCGQKLDAVKMFDEITE--PDVVSWSERIAAAC 255 (760)
Q Consensus 186 l~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~ 255 (760)
..-.... .....+. .+.+.|... ..-..+|++|.+-|++.|+++.|.+++++-.+ ..+..++.+..+|+
T Consensus 217 cdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH
Confidence 4333333 1111111 222222211 33457899999999999999999999987654 33344555555555
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.3e-07 Score=90.01 Aligned_cols=382 Identities=12% Similarity=0.007 Sum_probs=248.3
Q ss_pred hhHhHHHHhhhcCCChHHHHHHHhcCCCCC-eeeHHHHHHHHHhcCC-ccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC
Q 041183 312 SIGNALISMYGKCGQVNDARSIFDYLIFKD-SVSWNSMIAGYSENGF-FNQALDMFCHMLEFSLIPNGYTMASILEAVSN 389 (760)
Q Consensus 312 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 389 (760)
..-...+.+|-..++-+.|..++...++.- ..--|.|+.-+.+.|. -.++.--+...... .+.-......+++--.+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-cchHHHHHHHHHHHhhc
Confidence 344567788888899999998888876553 3334444444444432 22222222332221 01011111111111000
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH--hcCChHHHHHHHhhcC-----CCCcccHHHHHHHHHhcCChhHH
Q 041183 390 SKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYG--KCNALNESKRVLSEID-----KKNAVHINALASVLVYASCHAEA 462 (760)
Q Consensus 390 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A 462 (760)
.+...-..|......|.......-+.++. -.++...|...+-.+. ..|+.....+...+...|+.++|
T Consensus 177 -----g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 177 -----GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred -----chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 01111111222223334344444444433 3444444444433332 23677788899999999999999
Q ss_pred HHHHHHHHhCCCCCChh----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHh
Q 041183 463 LELYRTIWGSCREVNGS----TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRK 538 (760)
Q Consensus 463 ~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 538 (760)
+..|++.+.. .|+.. .|..| +...|+.+....+...+.... ..+...|..-.......++++.|+.+-++
T Consensus 252 ~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 252 EDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred HHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 9999988654 33332 23333 356788888888777776643 12333343344555667889999999888
Q ss_pred cCCC---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC
Q 041183 539 ICRD---SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ 614 (760)
Q Consensus 539 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 614 (760)
.... ++..|-.-...+...|+.++|.-.|+..+. +.| +..+|..|+..|...|.+.+|.-.-+...+ -++.+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~s 401 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNS 401 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcc
Confidence 7644 444555555778899999999999999887 677 669999999999999999999888777766 34555
Q ss_pred hhHHHHHH-HHhh-hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 041183 615 LEHYACIV-DLLG-RVGLLEGAKMTIDQM-PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL 690 (760)
Q Consensus 615 ~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 690 (760)
..+...+. ..+. .-.--++|.+++++. ...|+ ....+.+...|...|..+.++.++++.+...| |...+..|+.+
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDI 480 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHH
Confidence 66655553 3332 222348899999877 46676 45677777888999999999999999999999 88999999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 041183 691 YASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 691 ~~~~g~~~~A~~~~~~~~~~ 710 (760)
+...+.+.+|.+.|....+.
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999988765
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=3.4e-11 Score=81.93 Aligned_cols=49 Identities=22% Similarity=0.571 Sum_probs=46.3
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhcc
Q 041183 142 LDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASF 190 (760)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 190 (760)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999988887765
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=9.7e-10 Score=100.71 Aligned_cols=222 Identities=12% Similarity=0.002 Sum_probs=168.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChHhHHHHHHHHHHcCC
Q 041183 483 IVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC--RD-SLAGWNAMMMGYAQHGC 559 (760)
Q Consensus 483 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~ 559 (760)
.+.++|.+.|.+.+|++.++...+.. |-+.||..|...|.+..+++.|+.++.+.. .| |+....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 34455566666666666666555543 455566677777777777777777777653 33 33334456667777788
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 041183 560 YHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTI 638 (760)
Q Consensus 560 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (760)
.++|.++|+...+. .| +......+...|.-.++++.|+.+++++.. .|+ .++..|..+.-+|.-.++++-+..-|
T Consensus 306 ~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88899999888874 44 455666666677788889999999999888 444 45677888888888888888888888
Q ss_pred HhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 639 DQMP---IPPD--AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 639 ~~~~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++.. ..|+ ...|..+.......||+..|.+.|+-++.-+|++..++..|+..-.+.|+.++|+.+++...+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7762 2233 5679889888899999999999999999999999999999999999999999999999987764
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=1.4e-08 Score=104.00 Aligned_cols=231 Identities=15% Similarity=0.164 Sum_probs=171.8
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCC-chHHHHHHHHHHhcCCHHHHHHHHHhcC-------CC-C
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKA-----RY-DQD-IFVESAVIDMYCKCGTIEDAKRAFRKIC-------RD-S 543 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~-~ 543 (760)
.+...+...|...|+++.|+.+++...+. |. .|. ....+.+...|...+++++|..+|+++. .+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35666778888888888888888877764 21 122 2233446778888999999988888762 11 1
Q ss_pred ---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcC--C
Q 041183 544 ---LAGWNAMMMGYAQHGCYHEVSNLFNKMSKF-----GV-KPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHG--L 611 (760)
Q Consensus 544 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~ 611 (760)
..+++.|...|.+.|++++|...+++..+- |. .|.. ..++.+...|+..+++++|..+++...+-.. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 236888888999999999888887776541 22 2233 3466667788999999999999888766322 2
Q ss_pred CCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-
Q 041183 612 IPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMP---------IPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLEL- 676 (760)
Q Consensus 612 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 676 (760)
.++ ..+++.|...|...|++++|.++++++- ..+. ...++.+...|...+++++|.++|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4689999999999999999999998871 2232 446788888999999999999999998873
Q ss_pred ---C---CCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 677 ---Q---PDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 677 ---~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
. |+-..+|..|+.+|.++|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 44567889999999999999999999888653
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=5.9e-09 Score=112.52 Aligned_cols=243 Identities=12% Similarity=-0.016 Sum_probs=172.6
Q ss_pred hhHHHHHHHHHHhCCCCCCh-hHHHHHHHHHh---------ccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCC
Q 041183 459 HAEALELYRTIWGSCREVNG-STFSIVLKACA---------AMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGT 528 (760)
Q Consensus 459 ~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 528 (760)
.++|...|++..+. .|+. ..|..+..++. ..+++++|...++++.+.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45677777776654 3332 33433333322 3355789999999998876 3567788888888999999
Q ss_pred HHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHH
Q 041183 529 IEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEI-TYLAVLTSCCHAGLVREARTYLSC 604 (760)
Q Consensus 529 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 604 (760)
+++|...|++.. +.+...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999874 33456788889999999999999999999998 567543 333344456678999999999999
Q ss_pred hhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 605 MSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDAH-IWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 605 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
+.+ ..+| ++..+..+..++...|++++|...+.++. ..|+.. .++.+...+...| +.|...++.+.+..-..+
T Consensus 432 ~l~--~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRS--QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHH--hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 876 2344 45567778889999999999999999873 445544 4455555667666 477777777776332222
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
........+|.-.|+-+.+... +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2223366778888888888777 7777654
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=2.7e-09 Score=93.48 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=116.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDL 624 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~ 624 (760)
...|..+|.+.|+...|..-+++..+ ..|+. .++..+...|.+.|..+.|.+.|+.+.. +.| +..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44566677777777777777777777 45644 5666666777777777777777777776 444 45677777777
Q ss_pred hhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHH
Q 041183 625 LGRVGLLEGAKMTIDQMPIPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDV 700 (760)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 700 (760)
+|..|++++|...|++.-..|+ ..+|..++.+..+.|+.+.|.+.|+++++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 7777788888777777632232 446777777777778888888888888888887777788888888888888888
Q ss_pred HHHHHHHHhCCC
Q 041183 701 GKLRKEMKEKFL 712 (760)
Q Consensus 701 ~~~~~~~~~~~~ 712 (760)
.-++++...++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 877777765543
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=3.5e-09 Score=104.18 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=53.3
Q ss_pred CChhHHHHHHHHHHhCCC-CCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHH
Q 041183 457 SCHAEALELYRTIWGSCR-EVN--GSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAK 533 (760)
Q Consensus 457 ~~~~~A~~~~~~m~~~~~-~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 533 (760)
+..+.++.-+.++..... .|+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344455555555543221 111 1233344444455555555555555555443 233445555555555555555555
Q ss_pred HHHHhcC--CC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 534 RAFRKIC--RD-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 534 ~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
..|+... .| +...|..+..++...|++++|++.|++..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554442 11 233444444455555555555555555544
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=5.3e-06 Score=85.92 Aligned_cols=386 Identities=13% Similarity=0.055 Sum_probs=231.1
Q ss_pred CCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCC-ChhHHHHH
Q 041183 340 KDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLL-DDSMISCL 418 (760)
Q Consensus 340 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 418 (760)
.|...|..+.-+....|+++.+.+.|++.... ..-....|..+-..+...|.-..|..+++........| +...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35667777777888888888888888887654 33355567777777777777777887777665443223 23333333
Q ss_pred HHHHHh-cCChHHHHHHHhhcCC--------CCcccHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCC-CCC
Q 041183 419 ITTYGK-CNALNESKRVLSEIDK--------KNAVHINALASVLVYA-----------SCHAEALELYRTIWGSCR-EVN 477 (760)
Q Consensus 419 ~~~~~~-~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~m~~~~~-~~~ 477 (760)
-..|.+ .+.+++++....+... ..+..+-.+.-+|... ....++++.+++..+.+. .|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 333333 3445554444333321 1344455555444332 123567777887766543 233
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHH
Q 041183 478 GSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR---DSLAGWNAMMMGY 554 (760)
Q Consensus 478 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 554 (760)
...| +.--++..++++.|.+..++..+.+...++..|..|.-.+...+++.+|+.+.+.... .|......-+..-
T Consensus 480 ~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 3333 3334566778888888888888876567888888888888888888888888875521 1111111111111
Q ss_pred HHcCCHHHHHHHHHHHHH---------------------CCC-----CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 041183 555 AQHGCYHEVSNLFNKMSK---------------------FGV-----KP-D-EITYLAVLTSCCHAGLVREARTYLSCMS 606 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~---------------------~g~-----~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (760)
..-++.++++.....+.. .|+ .| + ..++..+..-.... .+.+..-.. +.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se~~-Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSELK-LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccccc-cC
Confidence 123344444333222211 000 11 1 12222222211110 010000000 11
Q ss_pred hhcCCCCCh--------hHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 607 DLHGLIPQL--------EHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 607 ~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
. ..+.|.. ..|....+.+.+.++.++|..-+.+.. .+-.+..|......+...|..++|.+.|..++.+
T Consensus 635 ~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 S-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred c-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1 1222322 345567778888999999987777773 3445667777777788899999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 041183 677 QPDNESTYVLLSNLYASAGMWNDVGK--LRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHM 754 (760)
Q Consensus 677 ~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (760)
+|+++.+...++.++.+.|+-.-|.+ ++..+.+. .|.-.+.-..|++..++.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------------------------dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------------------------DPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998887777 88888765 344455566677777777
Q ss_pred Hhhh
Q 041183 755 VATA 758 (760)
Q Consensus 755 ~~~~ 758 (760)
||.+
T Consensus 768 Gd~~ 771 (799)
T KOG4162|consen 768 GDSK 771 (799)
T ss_pred cchH
Confidence 7654
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=8.6e-09 Score=111.23 Aligned_cols=211 Identities=14% Similarity=0.030 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh---------cCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCC
Q 041183 492 TDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK---------CGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGC 559 (760)
Q Consensus 492 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 559 (760)
++.+.|...+++..+.. +.+...|..+..++.. .+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 35678999999998865 2345566666655542 345889999998875 3456688888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHhhhcCChHHHHHH
Q 041183 560 YHEVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL-EHYACIVDLLGRVGLLEGAKMT 637 (760)
Q Consensus 560 ~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 637 (760)
+++|...|+++.+ ..|+ ...+..+..++...|++++|...++.+.+ ..|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5675 46677788899999999999999999988 45543 3334445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 638 IDQMP--IPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 638 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++++. .+|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98873 3454 5557778888889999999999999998888988888888998989888 4888888887764
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=9.5e-06 Score=83.08 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=36.9
Q ss_pred hccCChhHHHHhhhcCC-CCCcc-hHHHHHHHHHhcCCcchHHHHHHHH
Q 041183 26 TKFADFRRAFRFLFDTQ-NRDII-TYNALISGLARFCQSGPALKLFDRL 72 (760)
Q Consensus 26 ~~~~~~~~a~~~~~~~~-~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m 72 (760)
...|++++|..+++.+. .|+.. .|-.+-.....+|+..-|.++|..+
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 46789999999998875 45554 6888888888888888888877654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=5e-08 Score=96.10 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD-EITYLAVLTSCC 590 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 590 (760)
.|..+...|...|+.++|...|++.. +.+...|+.+...+...|++++|...|++..+ +.|+ ...+..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 34444555555555555555555442 22334555555555555555555555555555 3443 244444444555
Q ss_pred ccCcHHHHHHHHHHhhh
Q 041183 591 HAGLVREARTYLSCMSD 607 (760)
Q Consensus 591 ~~g~~~~A~~~~~~~~~ 607 (760)
..|++++|.+.++...+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.8e-06 Score=80.64 Aligned_cols=407 Identities=11% Similarity=0.024 Sum_probs=217.3
Q ss_pred CCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCC---CCCeeeHHHHHHHHHhcCCccHHHHHH
Q 041183 289 ERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLI---FKDSVSWNSMIAGYSENGFFNQALDMF 365 (760)
Q Consensus 289 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 365 (760)
.+|+..|..+++.-...+-+....+-.-+..++.+.|++++|...+.-+. .++...+-.|..++.-.|.+.+|..+-
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 34444444444443322222222222334445556666666666665542 223444555555555556666665554
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCc--
Q 041183 366 CHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNA-- 443 (760)
Q Consensus 366 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 443 (760)
.+. +-++-.-..++...-+.++-++-..+.+.+.+. ...-.+|....-..-.+.+|++++.++...++
T Consensus 115 ~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 115 EKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred hhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 332 112222333444444555555555554444321 11122333333333445566666665554322
Q ss_pred ccHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hHHHHHHHHHhc-------------------------------
Q 041183 444 VHINA-LASVLVYASCHAEALELYRTIWGSCREVNG-STFSIVLKACAA------------------------------- 490 (760)
Q Consensus 444 ~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~------------------------------- 490 (760)
...|. +.-+|.+..-++-+.++++--.+. -||+ ...+.......+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 22222 222344444444444444443332 1221 112211111111
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcC-------C
Q 041183 491 ----MTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHG-------C 559 (760)
Q Consensus 491 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 559 (760)
-.+-+.|.+++--+.+. .| ..--.|+-.|.+.++..+|..+.+++.+..+.-|-.-...++..| .
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 12233344433333321 12 222345666889999999999999987766655444333344444 3
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 041183 560 YHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTI 638 (760)
Q Consensus 560 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (760)
..-|.+.|+-.-+++..-|. ..-.++..++.-..++++.+.++..+.. -+..|...--.+..+++..|.+.+|.++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s--YF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES--YFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 44566666665555544332 3344455556666778999999998877 23334444456889999999999999999
Q ss_pred HhCC--CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCC-CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041183 639 DQMP--IPPDAHIWQSL-LSACTIYGNIDLGLLAGSKLLELQPD-NESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCK 714 (760)
Q Consensus 639 ~~~~--~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (760)
-.+. .-.|..+|.++ .+.|...++.+.|..++-+.- .|. ..+.+...++.|.+++.+=-|-+.|..+...+..+
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 8884 22355666655 455688899998877654432 233 33445566788999999988888888887655444
Q ss_pred C
Q 041183 715 E 715 (760)
Q Consensus 715 ~ 715 (760)
+
T Consensus 495 E 495 (557)
T KOG3785|consen 495 E 495 (557)
T ss_pred c
Confidence 3
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.3e-07 Score=91.79 Aligned_cols=233 Identities=15% Similarity=0.094 Sum_probs=158.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH----------hHHHH
Q 041183 481 FSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLA----------GWNAM 550 (760)
Q Consensus 481 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~l 550 (760)
...+.++..+..+++.+.+-+....+.. -+..-++....+|...|.+..+...-.+..+.+-. .+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445566666777777777777777655 45555666667777777776666655544322111 12223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHhhhcC
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL-EHYACIVDLLGRVG 629 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 629 (760)
..+|.+.++++.++..|.+.......|+.. .+....+++........- +.|.. .-...=+..+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhcc
Confidence 446666778888888888876654444432 122233444443333322 33432 11222366778889
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 630 LLEGAKMTIDQM--PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 630 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
++..|+..|.++ ..+.|...|.....+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 355667788888888999999999999999999999999999999999999999999999999987
Q ss_pred HhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHH
Q 041183 708 KEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEH 753 (760)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (760)
.+. .|+.+++...+.+.+.+
T Consensus 453 le~--------------------------dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LEL--------------------------DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred Hhc--------------------------CchhHHHHHHHHHHHHH
Confidence 765 46777777777666654
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=2e-06 Score=87.81 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=31.8
Q ss_pred HhcCChhhHHHHhhhcCC-CCce-eHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 124 AKSGEIVSAEMCFRDCLD-LDNV-AYTAMVCGYVWNGEFDKSKEVFVEM 170 (760)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 170 (760)
...|+++.|..+++.... |+.. .|-.+.......|++--|...|..+
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 356889999888887654 5544 5666666666777766666665543
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=7.2e-09 Score=95.15 Aligned_cols=235 Identities=10% Similarity=0.037 Sum_probs=186.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhc
Q 041183 447 NALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKC 526 (760)
Q Consensus 447 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 526 (760)
+.+..+|.+.|.+.+|.+.|+.-... .|-+.||..|-++|.+...+..|..++.+-.+.- +-++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 46778888888888888888877665 4566678888888999999999998888877653 34444445567778888
Q ss_pred CCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 041183 527 GTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLS 603 (760)
Q Consensus 527 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (760)
++.++|.++++... ..++.....+...|.-.++++-|+.+|+++.+.|+ -+...|+.+.-+|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999998764 44566666777788888999999999999999885 355677777788888999999999999
Q ss_pred HhhhhcCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 604 CMSDLHGLIPQ--LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 604 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
++.. .-..|+ ..+|..|.....-.|++..|.+-|+-.- ...+...++.|.-.-.+.|+.++|..++..+....|+
T Consensus 383 RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 9887 334454 5788899999999999999999998773 4455678899888888999999999999999999996
Q ss_pred CchhHHH
Q 041183 680 NESTYVL 686 (760)
Q Consensus 680 ~~~~~~~ 686 (760)
-......
T Consensus 462 m~E~~~N 468 (478)
T KOG1129|consen 462 MAEVTTN 468 (478)
T ss_pred ccccccc
Confidence 4444333
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.9e-06 Score=86.23 Aligned_cols=408 Identities=11% Similarity=0.004 Sum_probs=245.3
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCe--eeHHHHHHHHHhcCCccH
Q 041183 283 LSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDS--VSWNSMIAGYSENGFFNQ 360 (760)
Q Consensus 283 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 360 (760)
+.-+...+++++|.+....++..+ +.+...+.+=+-++...+.+++|..+.+.-..... .-+-.=..+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 445567788999999999888877 55566666667778899999999977765432211 111122344457889999
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 041183 361 ALDMFCHMLEFSLIPNG-YTMASILEAVSNSKSLKQAMQVHSHIIKSGFLL-DDSMISCLITTYGKCNALNESKRVLSEI 438 (760)
Q Consensus 361 a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (760)
|+..++ |..++. .+...-...|.+.+++++|..+|+++.+.+... +...-..++. .+..-.+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----VAAALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----HHHhhhHH-HHHhc
Confidence 999988 334433 355666678889999999999999998875432 1111111211 11111221 34444
Q ss_pred CCCCcccHHHH---HHHHHhcCChhHHHHHHHHHHhC-------CCCCChh------H-HHHHHHHHhccCCHHHHHHHH
Q 041183 439 DKKNAVHINAL---ASVLVYASCHAEALELYRTIWGS-------CREVNGS------T-FSIVLKACAAMTDLEQGKAIH 501 (760)
Q Consensus 439 ~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~~------~-~~~ll~~~~~~~~~~~a~~~~ 501 (760)
+.....+|..+ ...++..|++.+|+++++..... +-.-+.. + -.-+.-.+...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44333445444 45677899999999999887321 1111111 1 112334556789999999999
Q ss_pred HHHHHcCCCCCchHHHHHHH---HHHhcCCH-H-HHHHHHHhcCCCCh---------------HhHHHHHHHHHHcCCHH
Q 041183 502 CLALKARYDQDIFVESAVID---MYCKCGTI-E-DAKRAFRKICRDSL---------------AGWNAMMMGYAQHGCYH 561 (760)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~A~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~ 561 (760)
...++... +|........+ ++....++ + .++..++....... ..-+.++..|. +..+
T Consensus 248 ~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~ 324 (652)
T KOG2376|consen 248 VDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMD 324 (652)
T ss_pred HHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHH
Confidence 99998774 44322222211 11111111 1 23333333221111 11122333332 3333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHH
Q 041183 562 EVSNLFNKMSKFGVKPDEITYLAVLTSCC--HAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTI 638 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 638 (760)
.+.++...... ..|.. .+..++..+. +...+..|..++....+ +.+-. ..+.-..+......|+++.|.+++
T Consensus 325 q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44333332221 33433 3444443332 22257788888888776 34333 456667778889999999999999
Q ss_pred H--------hCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCchhHHHHHHHHHhcCChhHHHH
Q 041183 639 D--------QMP-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLEL-------QPDNESTYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 639 ~--------~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~ 702 (760)
. ..+ ..-.+.+...+...+.+.++.+.|..++.+++.- .+.-...+..++..-.+.|+.++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 332 4445566667777788888888888888888871 23234456666667778899999999
Q ss_pred HHHHHHh
Q 041183 703 LRKEMKE 709 (760)
Q Consensus 703 ~~~~~~~ 709 (760)
+++++.+
T Consensus 480 ~leel~k 486 (652)
T KOG2376|consen 480 LLEELVK 486 (652)
T ss_pred HHHHHHH
Confidence 9999876
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=1.6e-07 Score=96.39 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhhhc-----CCCC-
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKF---GVKPD----EITYLAVLTSCCHAGLVREARTYLSCMSDLH-----GLIP- 613 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~- 613 (760)
++.+...+...+++++|..++++..+. -..++ ..+++.|...|...|++++|.++++.+.... +..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 444555556666666666666544331 01121 2456777777777777777777777766521 1122
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQM--------PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
....++.|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2355677777777777777777777655 13444 45788899999999999999998888874
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=1.3e-05 Score=81.34 Aligned_cols=412 Identities=12% Similarity=0.049 Sum_probs=197.6
Q ss_pred hcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhcCCccHHH
Q 041183 286 VGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL---IFKDSVSWNSMIAGYSENGFFNQAL 362 (760)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~ 362 (760)
+...|+.++|....+...+ +-..+...|..+.-.+-...++++|++.+... ...|...|.-+.-.-++.|+++...
T Consensus 51 L~~lg~~~ea~~~vr~glr-~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLR-NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhc-cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3345555666555554444 22334455666665565666677777777655 2224444444444444556666665
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhC-CCCChhHHHHHH------HHHHhcCChHHHHHH
Q 041183 363 DMFCHMLEFSLIP-NGYTMASILEAVSNSKSLKQAMQVHSHIIKSG-FLLDDSMISCLI------TTYGKCNALNESKRV 434 (760)
Q Consensus 363 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~A~~~ 434 (760)
..-....+. .| ....|..+..+..-.|+...|..+++...+.. -.|+...+.-.. ....+.|.++.|.+.
T Consensus 130 ~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 130 ETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 555555543 23 23345555555555666777777766666544 234444443222 223445666666666
Q ss_pred HhhcCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh-ccCCHHHHH-HHHHHHHHcCC
Q 041183 435 LSEIDKK--N-AVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACA-AMTDLEQGK-AIHCLALKARY 509 (760)
Q Consensus 435 ~~~~~~~--~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~ 509 (760)
+...... | ...-..-...+.+.++.++|..++..+... .||...|...+..+. +-.+..++. .+|....+.-
T Consensus 208 L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y- 284 (700)
T KOG1156|consen 208 LLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY- 284 (700)
T ss_pred HHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-
Confidence 5554432 1 112223345566677777777777777664 355555554444433 222222222 4444433321
Q ss_pred CCCchHHHHHHHHHHhcCCHHHH-HHHHHhcCCCC-hHhHHHHHHHHHHcCCHHH----HHHHHHHHHHCCC--------
Q 041183 510 DQDIFVESAVIDMYCKCGTIEDA-KRAFRKICRDS-LAGWNAMMMGYAQHGCYHE----VSNLFNKMSKFGV-------- 575 (760)
Q Consensus 510 ~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~-------- 575 (760)
|....-..+--.......+.+. -.++..+.+.+ +..+..+...|-.....+- +..+...+...|.
T Consensus 285 -~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 285 -PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred -cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111111110111111112111 12222222221 1122222222211111110 1111111111110
Q ss_pred --CCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHH
Q 041183 576 --KPDE--ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAH 648 (760)
Q Consensus 576 --~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~ 648 (760)
+|.. .++..++..+-+.|+++.|..+++.+.. ..|+ +..|-.=...+...|++++|..++++.. ..||..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 2332 4455566667777777777777777765 4444 3555555566677777777777777763 344444
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Cc-hhHH--HHHHHHHhcCChhHHHHHHHHH
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQPD------NE-STYV--LLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~-~~~~--~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
+-..-..-..+.++.++|.++.....+-+-+ +. -.|+ .=+.+|.++|++..|++-|..+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 4445555566677777777766665553321 11 1222 2245677777777777544443
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=3.6e-08 Score=95.30 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=93.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH----Hhhhc
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD----LLGRV 628 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 628 (760)
.+...|++++|++++++. .+.......+..+.+.++++.|.+.++.|.+ ...|. +...|+. .+...
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCc
Confidence 344556667666665432 2344555566667777777777777777765 33332 2222333 22233
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh-hHHHHHHH
Q 041183 629 GLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMW-NDVGKLRK 705 (760)
Q Consensus 629 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 705 (760)
+.+.+|.-+|+++. ..+++.+.+.+..+....|++++|.+.++++++.+|.++.++..++-+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 46777777777772 4567777777777888888888888888888888888888888888888888887 55667777
Q ss_pred HHHhC
Q 041183 706 EMKEK 710 (760)
Q Consensus 706 ~~~~~ 710 (760)
++++.
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 77654
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=4.1e-06 Score=87.34 Aligned_cols=124 Identities=14% Similarity=0.050 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKICR--DS-LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCC 590 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 590 (760)
++..+.+.|-..|++++|++++++... |+ +..|..-...+-..|++.+|.+.++...+ +.+ |...-+.....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHH
Confidence 344556666677777777777776542 22 33566666777777777777777777766 344 4444444556666
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCChhH--------HHHHHHHhhhcCChHHHHHHHHhC
Q 041183 591 HAGLVREARTYLSCMSDLHGLIPQLEH--------YACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
+.|++++|.+++....+ .+..|-... ....+.+|.+.|++..|++.|..+
T Consensus 274 Ra~~~e~A~~~~~~Ftr-~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTR-EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HCCCHHHHHHHHHhhcC-CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777665 333332211 133455666777777666665544
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=1.3e-07 Score=83.24 Aligned_cols=191 Identities=11% Similarity=0.025 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 041183 517 SAVIDMYCKCGTIEDAKRAFRKICRD---SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHA 592 (760)
Q Consensus 517 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 592 (760)
.-|.-.|...|++..|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+ +.|+. ...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 34556677777777777777766533 333677777777777888888888887777 56643 4555555556777
Q ss_pred CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 041183 593 GLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAG 670 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 670 (760)
|.+++|.+.|+.+..+....--..+|..++-+..+.|+.+.|.++|++.- .+..+.+...+.....+.|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 78888888888877743344445777777777778888888888887762 3344566777777777888888888888
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 671 SKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 671 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
++...-.+.+...+...+.+-...|+-+.|-++=.++.+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 887776666777777777777788888777776555554
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=7.5e-06 Score=87.01 Aligned_cols=639 Identities=13% Similarity=0.023 Sum_probs=308.8
Q ss_pred hhHHHHhhhcCCCCC---cchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchhHHHHHHHHh
Q 041183 31 FRRAFRFLFDTQNRD---IITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENEIVHGVCLKL 107 (760)
Q Consensus 31 ~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 107 (760)
...|+..|=+..+.+ ...|..|...|+...+...|..+|++..+-. ..+..........+++..+.+.++......
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 556666554443333 3478888888888888889999999988753 234456667777888888888666655555
Q ss_pred cCCCC----chhhhHHHHHHHhcCChhhHHHHhhhcCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 041183 108 GFSSR----VYLVSGFIENYAKSGEIVSAEMCFRDCLD---LDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEF 180 (760)
Q Consensus 108 ~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 180 (760)
+.... ...|..+--.|.+.++..+|...|+.... .|...|..+..+|.+.|++..|+++|.+....+ |+ .
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-S 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-h
Confidence 43322 12233344456677888889888887655 577789999999999999999999999877654 32 2
Q ss_pred hHHHHHHhccCc-----cchhhHHHHHH------hhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchH-H
Q 041183 181 SLTAVLGASFDV-----KEGEQIHGFGV------KVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSW-S 248 (760)
Q Consensus 181 t~~~ll~~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 248 (760)
+|.....+.... .......+.+. ..+. ..-..++-.+...+...|-...|.+++++-. ..+ .
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q--~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~ 703 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ--NGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIV 703 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHH
Confidence 332222221111 11111111111 1111 1111111111111222222233333333211 111 1
Q ss_pred HHHHhhc-------ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHH-----cCCCCchhHhH
Q 041183 249 ERIAAAC-------DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKV-----GFMEVVSIGNA 316 (760)
Q Consensus 249 ~ll~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~ 316 (760)
+++...+ -...+..+|-... .+ .|+.+....+..-.-..+....-. ++-...+. ....++..|..
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHH
Confidence 1111111 1112222232222 11 222222222222122222221100 00000000 11112233332
Q ss_pred HHHhhhc----C----CChHHHHHHHhcC---CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041183 317 LISMYGK----C----GQVNDARSIFDYL---IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILE 385 (760)
Q Consensus 317 li~~~~~----~----g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 385 (760)
|...|.+ . .+...|+..+... ...+...||.|--. ...|.+.-+.-.|-+-... -+-...+|..+.-
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGV 858 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccce
Confidence 3222222 1 1223455555544 22344555555443 3334454444444433322 1223445555555
Q ss_pred HhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC-----C---CCcccHHHHHHHHHhcC
Q 041183 386 AVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEID-----K---KNAVHINALASVLVYAS 457 (760)
Q Consensus 386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~ 457 (760)
.+....+++.|...|...+...+ .+...|-.........|+.-++..+|..-. + ++...|-........+|
T Consensus 859 L~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng 937 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG 937 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc
Confidence 66667777777777776654432 233444443344445566666666655411 1 12222333333344556
Q ss_pred ChhHHHHHHHHHHhC---------CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCchHHH----HHHHHH
Q 041183 458 CHAEALELYRTIWGS---------CREVNGSTFSIVLKACAAMTDLEQGKAIHCLALK-ARYDQDIFVES----AVIDMY 523 (760)
Q Consensus 458 ~~~~A~~~~~~m~~~---------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~----~l~~~~ 523 (760)
+.++-+...+.+-.. +.+.+...|.+........+....+.....+... .....+...|+ .+...+
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 555544444333221 2233444555555555555555555555544332 01122333333 334455
Q ss_pred HhcCCHHHHHHHHHhcCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHH
Q 041183 524 CKCGTIEDAKRAFRKICRD-SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE----ITYLAVLTSCCHAGLVREA 598 (760)
Q Consensus 524 ~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A 598 (760)
+..|.++.|..-+...... +-.+...-+.. .-.++++++.+.|+++.. +.-+. .....++-+....+.-+.|
T Consensus 1018 lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A 1094 (1238)
T KOG1127|consen 1018 LSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDA 1094 (1238)
T ss_pred hhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHH
Confidence 6667777666655544311 11111111111 335788888888888776 22222 3344444555667777777
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC---C----CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041183 599 RTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM---P----IPPDAHIWQSLLSACTIYGNIDLGLLAGS 671 (760)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 671 (760)
...+-+... --+|+..+.-.|...+.-..+-.....+.++. + +.-.+.....+ .+.+.|+-....+.++
T Consensus 1095 ~~lLfe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~q 1170 (1238)
T KOG1127|consen 1095 QFLLFEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQ 1170 (1238)
T ss_pred HHHHHHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHH
Confidence 777766665 24455555555554444333322222222222 1 11111111111 2456788888899999
Q ss_pred HHhccCCCCchhHHHHHHHHH
Q 041183 672 KLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 672 ~~~~~~p~~~~~~~~l~~~~~ 692 (760)
++....|.++..|..|..-|.
T Consensus 1171 r~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1171 RAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHhcCCCChHHHHHHHHHHH
Confidence 999999999999988875443
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.98 E-value=5.5e-06 Score=84.06 Aligned_cols=426 Identities=11% Similarity=0.065 Sum_probs=269.7
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHH
Q 041183 288 GERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDM 364 (760)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 364 (760)
..++.....+..+.+.+ +.+....+.....-.+...|+-++|.......... +.+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34556666666666665 33333344444444456679999999988877544 567888888888888999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---
Q 041183 365 FCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK--- 441 (760)
Q Consensus 365 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 441 (760)
|......+ +-|...+.-+.-.-++.++++........+.+... -....|..+..++.-.|+...|..+++...+.
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99988742 23556676666666777888877777766665422 24456777778888889999998888776542
Q ss_pred --CcccHHH------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 041183 442 --NAVHINA------LASVLVYASCHAEALELYRTIWGSCREVNGSTF-SIVLKACAAMTDLEQGKAIHCLALKARYDQD 512 (760)
Q Consensus 442 --~~~~~~~------l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 512 (760)
+...+.. -.......|..++|++.+..-... ..|...+ .+-...+.+.++++.|..++..++..+ ||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 2222222 223456778888888887765432 1222222 233455678899999999999998876 55
Q ss_pred chHH-HHHHHHHHhcCCHHHHH-HHHHhcCCC--ChHhHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041183 513 IFVE-SAVIDMYCKCGTIEDAK-RAFRKICRD--SLAGWNAMMMGYAQ-HGCYHEVSNLFNKMSKFGVKPDEITYLAVLT 587 (760)
Q Consensus 513 ~~~~-~~l~~~~~~~~~~~~A~-~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 587 (760)
..-| ..+..++.+..+.-++. .+|....+. -...-..+-..... ..-.+..-.++..+.+.|+++--..+.+|-
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy- 330 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY- 330 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH-
Confidence 4444 44555554333333444 556554311 00000000001111 122344455677778888765333333332
Q ss_pred HHhccCcHHH----HHHHHHHhhhhcC----------CCCChh--HHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH-H
Q 041183 588 SCCHAGLVRE----ARTYLSCMSDLHG----------LIPQLE--HYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAH-I 649 (760)
Q Consensus 588 ~~~~~g~~~~----A~~~~~~~~~~~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~ 649 (760)
-.....+- +..+...+.. .| -+|+.. ++..++..+-+.|+++.|..+++.. ...|+.. .
T Consensus 331 --k~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 331 --KDPEKVAFLEKLVTSYQHSLSG-TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred --hchhHhHHHHHHHHHHHhhccc-ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 22111111 1122222211 11 145544 4456778889999999999999988 4566644 4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CCCceeEEEEC
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLC-----KEPGYSWIHVG 724 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~ 724 (760)
|..-.+.+...|+.++|...++++.+++-.|..+...-+.-..++++.++|.++.-...+.|.. .+..|.|++++
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 5566677889999999999999999998668777778899999999999999999988877642 12247787665
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=4.3e-06 Score=77.92 Aligned_cols=311 Identities=14% Similarity=0.058 Sum_probs=200.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHH---HHHhcCcCCHHHHHHHHHHHHHhCCCCChhHH-HHHHH
Q 041183 345 WNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASI---LEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMI-SCLIT 420 (760)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 420 (760)
.--+-+.+...|++..|+..|...++. |+..|.++ ...|...|+..-|..-+...++. +||-..- ..-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 345677788888888888888887763 33334333 34566667666666666666543 3443211 11224
Q ss_pred HHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 041183 421 TYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAI 500 (760)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 500 (760)
.+.+.|.++.|..-|+.+.+.++. .|...++.+-+....+ .......+..+...|+...|+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHH
Confidence 566777777777777776654331 1111112111111100 01122344556778899999999
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 041183 501 HCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKI---CRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 577 (760)
...+++.. +.|...|..-..+|...|++..|+.-++.. ...+..++-.+-..+...|+.+.++...++..+ +.|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCc
Confidence 99998865 467888888899999999999998766544 456667777778888889999999999988888 678
Q ss_pred CHHH----HHHHH---------HHHhccCcHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHH
Q 041183 578 DEIT----YLAVL---------TSCCHAGLVREARTYLSCMSDLHGLIPQ-----LEHYACIVDLLGRVGLLEGAKMTID 639 (760)
Q Consensus 578 ~~~~----~~~l~---------~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (760)
|... |..|- ....+.++|.++++..+...+ ..|. ...+..+..++...|++.+|++...
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 7532 22111 123445666666666666655 2232 3345556677777788888888777
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 041183 640 QM-PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTY 684 (760)
Q Consensus 640 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 684 (760)
+. .+.|+ +.++.--..+|.-...++.|+.-|+++.+.+|+|..+-
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 76 34444 66777777777777888888888888888887665443
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.5e-08 Score=98.29 Aligned_cols=215 Identities=15% Similarity=0.108 Sum_probs=169.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHH
Q 041183 489 AAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSN 565 (760)
Q Consensus 489 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 565 (760)
.+.|++..|.-.|+..+... |-+...|..|.......++-..|+..+.+.. +.|....-.|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 56777888888888877766 3567788888888888888888888877664 4456677788888999999899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHH
Q 041183 566 LFNKMSKFGVKPDEITYLAVL-----------TSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 566 ~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 634 (760)
.++.-+.. +|.. ..+. ..+.....+....++|-++....+..+|+.+...|.-.|--.|.+++|
T Consensus 375 ~L~~Wi~~--~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRN--KPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHh--Cccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99887663 2211 1111 122333345556666666665466668899999999999999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 635 KMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 635 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
++-|+.+ . .+.|...||-|..++....+.++|+..|.+++++.|.-..+.+.|+..|...|.|++|.++|=....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999988 3 4456779999999999999999999999999999999999999999999999999999999887654
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=2.1e-06 Score=89.43 Aligned_cols=281 Identities=14% Similarity=0.085 Sum_probs=147.1
Q ss_pred HHhcCChHHHHHHHhhcCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh------ccC
Q 041183 422 YGKCNALNESKRVLSEIDKK--N-AVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACA------AMT 492 (760)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~------~~~ 492 (760)
+...|++++|++.++.-... | ..........+.+.|+.++|..+|+.+.+.+ |+...|...+..+. ...
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 34455555555555443321 1 2233344455555566666666666655543 34443333333332 112
Q ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHH-HHHHHHhcCCCCh-HhHHHHHHHHHHcCCHHHHHHHHHHH
Q 041183 493 DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIED-AKRAFRKICRDSL-AGWNAMMMGYAQHGCYHEVSNLFNKM 570 (760)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m 570 (760)
+.+...++++++...- |.......+.-.+.....+.. +..++..+...++ .+|+.+-..|....+..-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3445555555554432 222222222111111112221 2222233333333 23444444444333333333444433
Q ss_pred HHC----C----------CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHH
Q 041183 571 SKF----G----------VKPDE--ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEG 633 (760)
Q Consensus 571 ~~~----g----------~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 633 (760)
... + -.|.. .++..+...|...|++++|+++++.+.+ ..|+ +..|..-+..|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 321 1 12222 3455556677778888888888887776 4454 5777777778888888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCC-------chhHHHHHHHHHhcCChhHHHH
Q 041183 634 AKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ--PDN-------ESTYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 634 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~ 702 (760)
|.+.++.+. ..-|..+-+-.+..+.+.|+.++|...+.....-+ |.. .......+.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888887774 33444555556666777888888888777766543 211 2233456778888888888887
Q ss_pred HHHHHHh
Q 041183 703 LRKEMKE 709 (760)
Q Consensus 703 ~~~~~~~ 709 (760)
.|....+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 7766554
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2e-06 Score=78.40 Aligned_cols=381 Identities=11% Similarity=0.040 Sum_probs=234.5
Q ss_pred hHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHH-HHHhcCc
Q 041183 315 NALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASI-LEAVSNS 390 (760)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~ 390 (760)
.+.+..+.+..++++|++++..-.++ +......|..+|....++..|-+.++++-. ..|...-|..- ...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 44455556677788888887766443 445567777888888888888888888766 35555555322 3445566
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhcCC-CCcccHHHHHHHHHhcCChhHHHHHHH
Q 041183 391 KSLKQAMQVHSHIIKSGFLLDDS--MISCLITTYGKCNALNESKRVLSEIDK-KNAVHINALASVLVYASCHAEALELYR 467 (760)
Q Consensus 391 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 467 (760)
+.+..|..+...|.+. ++.. +...-....-..+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7778888887776542 1111 111111123346788888999998884 566677777777888999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc---------------------hHHHHHHH-----
Q 041183 468 TIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDI---------------------FVESAVID----- 521 (760)
Q Consensus 468 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------~~~~~l~~----- 521 (760)
...+-+---....|+..+ ++.+.++.+.|.+...++++.|++..+ ..-+.+++
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 887754333445666555 456778899999999888887654211 01122333
Q ss_pred --HHHhcCCHHHHHHHHHhcCCC-----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 041183 522 --MYCKCGTIEDAKRAFRKICRD-----SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAG 593 (760)
Q Consensus 522 --~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 593 (760)
.+.+.|+++.|.+.+-+|+++ |++|...+.-.-. .+++.+..+-+.-+.+ +.| ...||..++-.||+..
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhH
Confidence 346788999999999999743 6666655543322 3445555555555555 345 4578888888999999
Q ss_pred cHHHHHHHHHHhhhhcCCC-CChhHHHHHHHHhh-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCh----hHH
Q 041183 594 LVREARTYLSCMSDLHGLI-PQLEHYACIVDLLG-RVGLLEGAKMTIDQMPIPPDAHIWQSLLSAC-TIYGNI----DLG 666 (760)
Q Consensus 594 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~----~~A 666 (760)
-++.|-.++.+-.. .... .+...|+ |++++. -.-..++|.+-+..+...-....-...+..- .+..+- ..|
T Consensus 325 yf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 325 YFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999888775543 1111 2333443 344443 4456777776665542000000111111111 111111 234
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 667 LLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 667 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
++-|++.+++- -.+....+++|++..++..+.+.|+.-.+
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 45555555542 12566778899999999999999987554
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=3.7e-05 Score=80.10 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=95.6
Q ss_pred CCchhhhHHH--HHHHhcCChhhHHHHhhhcCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHh
Q 041183 111 SRVYLVSGFI--ENYAKSGEIVSAEMCFRDCLDLDNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGA 188 (760)
Q Consensus 111 ~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 188 (760)
-|..|-.+++ +.|..-|++|.|.+-.+.+. +...|..|.+.+.+.++++-|.-.+-.|....- . ++
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg------a----RA 791 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG------A----RA 791 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh------H----HH
Confidence 3455555555 35677899999987766654 446799999999999999999999988864320 0 00
Q ss_pred ccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHh
Q 041183 189 SFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLR 268 (760)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~ 268 (760)
+.+. .+.+ . ..-..+.-.-...|..++|+.++.+-..-|. .|.+..+-..+++|+++-+.-.
T Consensus 792 ---------lR~a-~q~~----~--e~eakvAvLAieLgMlEeA~~lYr~ckR~DL--lNKlyQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 792 ---------LRRA-QQNG----E--EDEAKVAVLAIELGMLEEALILYRQCKRYDL--LNKLYQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred ---------HHHH-HhCC----c--chhhHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHhhcc
Confidence 0000 0000 0 0111222233456889999998887654432 3444444447888888776654
Q ss_pred hCCccCCcchHHHHHHhhcCCCcchHHHHHHHH
Q 041183 269 FNDFQINEYTMINLLSSVGGERILRAGKQIQAF 301 (760)
Q Consensus 269 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 301 (760)
+..++. ||-....-+...+|.+.|.+.|+.
T Consensus 854 RiHLr~---Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 854 RIHLRN---TYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred ceehhh---hHHHHHHHHHhhccHHHHHHHHHh
Confidence 444443 444444445556777888777764
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.6e-07 Score=90.87 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=131.4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHH
Q 041183 475 EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYD-QDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMG 553 (760)
Q Consensus 475 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 553 (760)
.|.......+...+...++-+.+..-++........ .+..........+...|++++|++++... .+.......+..
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi 140 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQI 140 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHH
Confidence 455555544444444434444444444333322222 22233333345566678888888887765 556666778888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC
Q 041183 554 YAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCH----AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG 629 (760)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 629 (760)
|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+..|.-+|+++.+ ...+++.+.+.+..++...|
T Consensus 141 ~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999987 44554 34444544332 3368899999999877 56778888999999999999
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHhccCCCCc
Q 041183 630 LLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNI-DLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 630 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 681 (760)
++++|.+++++. . .+.++.++..++......|+. +.+.+.+.++....|+.+
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 999999999876 2 445567777787777777777 667788888888888654
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=0.00011 Score=78.47 Aligned_cols=542 Identities=15% Similarity=0.016 Sum_probs=271.8
Q ss_pred CChhhHHHHhhhcCCCCce---eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHH
Q 041183 127 GEIVSAEMCFRDCLDLDNV---AYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGV 203 (760)
Q Consensus 127 g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 203 (760)
.+...|...|-+....|+. .|..|...|....+...|.+.|++..+.+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD----------------------------- 522 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD----------------------------- 522 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------------
Confidence 3456666665544444433 78888888888778889999999887765
Q ss_pred hhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCc---chHHHHHHhhc-----ChhHHHHHHHHHhhCCccCC
Q 041183 204 KVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDV---VSWSERIAAAC-----DGVEAFGLFKDLRFNDFQIN 275 (760)
Q Consensus 204 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~-----~~~~a~~~~~~m~~~~~~~~ 275 (760)
..+...+-.+.+.|++..+++.|..+.-...+.+. ..+|-.-.+.. +..+++.-|+...+.. +.|
T Consensus 523 ------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD 595 (1238)
T KOG1127|consen 523 ------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKD 595 (1238)
T ss_pred ------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chh
Confidence 44555567788888888889888888544333211 12333333333 5566666666655443 345
Q ss_pred cchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCC----------CeeeH
Q 041183 276 EYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFK----------DSVSW 345 (760)
Q Consensus 276 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~ 345 (760)
...|..+..+|.+.|....|.++|..............| ......+..|.+.+|...+..+... -..++
T Consensus 596 ~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f-k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 596 YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF-KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 567777888888888888888888665543221111111 1122234567777777777665211 12233
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHH-------CCCCCCHhhHHHHHHHhcCcCCHH------HHHH-HHHHHHHhCCC--
Q 041183 346 NSMIAGYSENGFFNQALDMFCHMLE-------FSLIPNGYTMASILEAVSNSKSLK------QAMQ-VHSHIIKSGFL-- 409 (760)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~~~~------~a~~-~~~~~~~~~~~-- 409 (760)
-.+...+...|-..++...+++-++ +...-+...|..+-.+|.-.-..+ .... ++.+....+..
T Consensus 675 ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~ 754 (1238)
T KOG1127|consen 675 IRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKK 754 (1238)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcc
Confidence 3333333333433444443333222 111112222222211111000000 0000 00011111111
Q ss_pred ------------------CChhHHHHHHHHHHh----cC----ChHHHHHHHhhcCC---CCcccHHHHHHHHHhcCChh
Q 041183 410 ------------------LDDSMISCLITTYGK----CN----ALNESKRVLSEIDK---KNAVHINALASVLVYASCHA 460 (760)
Q Consensus 410 ------------------~~~~~~~~l~~~~~~----~~----~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 460 (760)
.+...|..|...|.+ +| +...|...+....+ .+...|+.|.-. ...|++.
T Consensus 755 ~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva 833 (1238)
T KOG1127|consen 755 NDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVA 833 (1238)
T ss_pred hhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhh
Confidence 112222222222211 11 11234444443322 344455555444 3345555
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 041183 461 EALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKI- 539 (760)
Q Consensus 461 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 539 (760)
-|..-|-+-.... +....+|..+--.+....+++.|...|...+... +.+...|--........|+.-++..+|..-
T Consensus 834 ~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 834 CAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred hhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 5554444433321 2233455555555666677777777777666544 233344433333333456666666666431
Q ss_pred ----C---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 041183 540 ----C---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKF--------GVKP-DEITYLAVLTSCCHAGLVREARTYLS 603 (760)
Q Consensus 540 ----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (760)
. -++..-|-.........|++++-+...+++... +-.| +...|........+.+.+..|.+...
T Consensus 912 el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 912 ELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 122222333333344555555444333332211 1234 34667766666666777666666555
Q ss_pred HhhhhcCCCCChhHHH----HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 604 CMSDLHGLIPQLEHYA----CIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 604 ~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
+...-.....+...|+ .+...++..|.++.|...+...+...+..+..+-+.. .-.++++++.+.|++++.+.-+
T Consensus 992 RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~s 1070 (1238)
T KOG1127|consen 992 RLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNS 1070 (1238)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhccc
Confidence 5432111222333333 3455566777788777666655433444443333333 4457888888888888886543
Q ss_pred Cc---hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 680 NE---STYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 680 ~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+. .....++.+...++.-+.|...+-+...
T Consensus 1071 e~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1071 ESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred ccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 33 3455566666677777777776665543
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=0.00012 Score=76.45 Aligned_cols=450 Identities=9% Similarity=0.056 Sum_probs=231.7
Q ss_pred CchhhhhHHH--HhhccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhC-C--------CCCCcc
Q 041183 14 DPILSTTLIS--HFTKFADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQ-G--------LRPDAF 82 (760)
Q Consensus 14 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~--------~~p~~~ 82 (760)
|+.|-..+++ -|.-.|+.+.|.+.++.+++.. .|..|.+-|.+..+.+-|.-++-.|... | -.|+..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~--vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDS--VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhH--HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4555555543 4678899999999998888865 4677888888888777777666666432 1 122211
Q ss_pred -cHHHHHHHhcCCCchh---HHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC-CCceeHHHHHHHHHhc
Q 041183 83 -TFSSLVKACGSLQENE---IVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD-LDNVAYTAMVCGYVWN 157 (760)
Q Consensus 83 -~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 157 (760)
.-.+++ ....|.++ .++...++ |..|=+.|-..|.+++|.++.+.-.. .=..||..-...+-.+
T Consensus 803 eakvAvL--AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 803 EAKVAVL--AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred hhHHHHH--HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 111111 12334444 44444444 34444567778999999988765433 1123566666667778
Q ss_pred CChhHHHHHHHH----------HHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcC
Q 041183 158 GEFDKSKEVFVE----------MRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCG 227 (760)
Q Consensus 158 g~~~~A~~~~~~----------m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 227 (760)
+|.+.|++.|++ |.... +|...-|- +- ..+..+|.=....+-..|
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~-p~~~e~Yv---~~---------------------~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEY-PKQIEQYV---RR---------------------KRDESLYSWWGQYLESVG 926 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhC-hHHHHHHH---Hh---------------------ccchHHHHHHHHHHhccc
Confidence 889999988886 33322 22333331 00 233334444444445567
Q ss_pred CHHHHHHHhccCCCCCcchHHHHHHhhc---ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHH
Q 041183 228 QKLDAVKMFDEITEPDVVSWSERIAAAC---DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYK 304 (760)
Q Consensus 228 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 304 (760)
+.+.|+.++.... .|-++++..| +.++|-.+-++ .-|....-.+.+.|-..|++.+|..+|.....
T Consensus 927 emdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 927 EMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred chHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7777777776543 2344444444 55555555443 22344445566666677777777777665542
Q ss_pred Hc--C----CCCchhHhHHHHhhh--cCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHH--------H
Q 041183 305 VG--F----MEVVSIGNALISMYG--KCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCH--------M 368 (760)
Q Consensus 305 ~g--~----~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m 368 (760)
.. + +.|. -..|.+.+. ...+.-.|-+.|++... -+...+-.|-++|.+.+|+++--. +
T Consensus 996 fsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g~----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 996 FSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELGG----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcch----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 21 0 0000 011111111 12233344445554321 122334456677777777765221 2
Q ss_pred HHCCCCC--CHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC-C----
Q 041183 369 LEFSLIP--NGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDK-K---- 441 (760)
Q Consensus 369 ~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~---- 441 (760)
+...+.| |+...+-....++...+++.|..++-...+. ...+..|. ..++.-..++-+.|.. +
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQLCK-NRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHh-cCCCchhHHHHHhcCcCcCCCc
Confidence 2222333 4555666666677777777777766554431 12222222 2222222233333321 1
Q ss_pred C----cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHH---------HHH----HHH
Q 041183 442 N----AVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGK---------AIH----CLA 504 (760)
Q Consensus 442 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------~~~----~~~ 504 (760)
+ ......+...|.++|.+..|-+-|.+.-+. ...+.++.+.|+.++-. ++| ..+
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyL 1210 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYL 1210 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhh
Confidence 1 223455667788888887777766654221 12345555566544321 111 122
Q ss_pred HHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Q 041183 505 LKARYDQDIFVESAVIDMYCKCGTIEDAKRAFR 537 (760)
Q Consensus 505 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 537 (760)
....+..++.+...++.-|.+..-++.--.+|.
T Consensus 1211 QtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1211 QTLDWQDNPQTMKDIETFYTKGQAFDHLANFYK 1243 (1416)
T ss_pred hhcccccChHHHhhhHhhhhcchhHHHHHHHHH
Confidence 233445556666555555555544444444443
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.2e-05 Score=82.67 Aligned_cols=257 Identities=10% Similarity=-0.050 Sum_probs=143.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhHHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCC
Q 041183 452 VLVYASCHAEALELYRTIWGSCREVNGSTFSI---VLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGT 528 (760)
Q Consensus 452 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 528 (760)
.+...|++++|.+.+++..+..+ .+...+.. ........+..+.+.+.+.. .....+........+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYP-RDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 44556666677776666655421 12222221 11111223344444444433 111112223344455567777888
Q ss_pred HHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 041183 529 IEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGV-KPDE--ITYLAVLTSCCHAGLVREARTYL 602 (760)
Q Consensus 529 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 602 (760)
+++|...+++.. +.+...+..+..++...|++++|...+++.....- .|+. ..|..+...+...|++++|..++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888887664 33455677777788888888888888887776321 1222 23445667777888888888888
Q ss_pred HHhhhhcCCCCChhHH-H--HHHHHhhhcCChHHHHHH--H-HhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041183 603 SCMSDLHGLIPQLEHY-A--CIVDLLGRVGLLEGAKMT--I-DQM----PIPPDAHIWQSLLSACTIYGNIDLGLLAGSK 672 (760)
Q Consensus 603 ~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 672 (760)
+.+.......+..... + .++..+...|....+.++ + ... +.............++...|+.+.|...++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8875411111222111 1 223333334433222222 1 111 1111112223456667788889999998888
Q ss_pred HhccC-C--------CCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 673 LLELQ-P--------DNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 673 ~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+.... . .........+.++...|++++|.+.+......
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76632 1 13556677788899999999999999987754
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=6.4e-07 Score=85.77 Aligned_cols=181 Identities=14% Similarity=0.055 Sum_probs=125.2
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----
Q 041183 511 QDIFVESAVIDMYCKCGTIEDAKRAFRKICR--D-SL---AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEI---- 580 (760)
Q Consensus 511 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---- 580 (760)
.....+..+...+...|++++|...|+++.. | +. ..+..+..++.+.|++++|...++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 4466677778888888999999888887642 2 22 3567778888888899999999988887 345332
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 041183 581 TYLAVLTSCCHA--------GLVREARTYLSCMSDLHGLIPQL-EHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQ 651 (760)
Q Consensus 581 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 651 (760)
++..+..++... |+++.|.+.++.+.+ ..|+. ..+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 344444455443 678888888888876 23332 22222211110 00000 01122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDN---ESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
.+...+...|+++.|+..++++++..|++ +..+..++.++.+.|++++|..+++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45667889999999999999999987754 5799999999999999999999999987654
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=7.9e-07 Score=81.19 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=112.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL 630 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 630 (760)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..|+..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777776444332221 21 012236667788877887776 345678888999999999999
Q ss_pred hHHHHHHHHhC-C-CCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHH
Q 041183 631 LEGAKMTIDQM-P-IPPDAHIWQSLLSAC-TIYGN--IDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 631 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
+++|...+++. . .+.+...+..+..++ ...|+ .++|.++++++++.+|+++.++..++.++.+.|++++|+..|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 2 345677788887764 66676 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 041183 706 EMKEKF 711 (760)
Q Consensus 706 ~~~~~~ 711 (760)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998764
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.2e-05 Score=77.11 Aligned_cols=406 Identities=11% Similarity=0.013 Sum_probs=239.8
Q ss_pred hcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC--CCC-CeeeHHHHHHHHHhcCCccHHH
Q 041183 286 VGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL--IFK-DSVSWNSMIAGYSENGFFNQAL 362 (760)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~li~~~~~~g~~~~a~ 362 (760)
....|+++.|...|...+..... +...|..-..+|.+.|++++|.+=-.+- ..| ....|+-...++.-.|++++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 44567777777777766655443 6666777777777777777776544333 222 3456777777777778888888
Q ss_pred HHHHHHHHCCCCCC-HhhHHHHHHHhcCcC---CHHHHHHHHHHHHHh---CCCCChhHHHHHHHHH----------Hhc
Q 041183 363 DMFCHMLEFSLIPN-GYTMASILEAVSNSK---SLKQAMQVHSHIIKS---GFLLDDSMISCLITTY----------GKC 425 (760)
Q Consensus 363 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~----------~~~ 425 (760)
..|.+-.+. .|+ ...++.+..+..... +.-.--.++..+... ........|..++..+ ...
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 877776653 333 334444444441100 000000011100000 0000011111111111 111
Q ss_pred CChHHHHHHHhhcC----------------CC-----C-----------------cccHHHHHHHHHhcCChhHHHHHHH
Q 041183 426 NALNESKRVLSEID----------------KK-----N-----------------AVHINALASVLVYASCHAEALELYR 467 (760)
Q Consensus 426 ~~~~~A~~~~~~~~----------------~~-----~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~ 467 (760)
.++..+...+.... .| + ......+..+..+..++..|++.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11112222211110 01 0 0113456677777788888999888
Q ss_pred HHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC------chHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 041183 468 TIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQD------IFVESAVIDMYCKCGTIEDAKRAFRKICR 541 (760)
Q Consensus 468 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 541 (760)
...... -+..-++....++...|........-....+.|-..- ...+..+..+|.+.++++.|...|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 887754 3444556666777888887777766666665442110 11222244567778889999999887532
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHH
Q 041183 542 DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYAC 620 (760)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 620 (760)
+... -....+....++++...+...- +.|+. .-...-...+.+.|++..|...|.++.. ..+-|...|..
T Consensus 327 e~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsN 397 (539)
T KOG0548|consen 327 EHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSN 397 (539)
T ss_pred hhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHH
Confidence 1110 1122334455666666655544 45544 1122225567889999999999999988 34567899999
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChh
Q 041183 621 IVDLLGRVGLLEGAKMTIDQM-PI-PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWN 698 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 698 (760)
..-+|.+.|.+..|++=.+.. .. ++....|.--..++....+++.|++.|+++++.+|++..+...+.++...+....
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~ 477 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDE 477 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCC
Confidence 999999999999998877666 23 3445566666667777789999999999999999999998888888887654444
Q ss_pred HHHHHHH
Q 041183 699 DVGKLRK 705 (760)
Q Consensus 699 ~A~~~~~ 705 (760)
...++.+
T Consensus 478 ~~ee~~~ 484 (539)
T KOG0548|consen 478 TPEETKR 484 (539)
T ss_pred CHHHHHH
Confidence 4444444
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=9.1e-07 Score=76.30 Aligned_cols=90 Identities=8% Similarity=-0.103 Sum_probs=48.9
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 041183 620 CIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMW 697 (760)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 697 (760)
.+...+...|++++|...|+..- .+.+...|..+..++...|++++|+..|+++++++|+++.++..++.++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 34444455555555555555441 2334455555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHh
Q 041183 698 NDVGKLRKEMKE 709 (760)
Q Consensus 698 ~~A~~~~~~~~~ 709 (760)
++|+..+++..+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=5.5e-07 Score=77.63 Aligned_cols=123 Identities=10% Similarity=-0.048 Sum_probs=102.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--
Q 041183 565 NLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-- 642 (760)
Q Consensus 565 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 642 (760)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...|..++.++.+.|++++|...|++.-
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 46666666 56664 44566778899999999999999887 234467888999999999999999999999882
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 643 IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 643 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
.+.++..+..+..++...|++++|+..+++++++.|+++..+...+.++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999888877654
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=1.8e-08 Score=61.07 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.6
Q ss_pred hcCCCCchhhhhHHHHhhccCChhHHHHhhhcCC
Q 041183 9 NGHHLDPILSTTLISHFTKFADFRRAFRFLFDTQ 42 (760)
Q Consensus 9 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 42 (760)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999998874
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=2.6e-05 Score=91.32 Aligned_cols=193 Identities=9% Similarity=-0.134 Sum_probs=81.8
Q ss_pred HhHHHHhhhcCCChHHHHHHHhcCCCCCeee--HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcC
Q 041183 314 GNALISMYGKCGQVNDARSIFDYLIFKDSVS--WNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSK 391 (760)
Q Consensus 314 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 391 (760)
.......+...|++.+|.............. ...........|+++.+...+..+.......+..........+...|
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3444555666677776666555553332111 11112233345555555555544321111112222223333444556
Q ss_pred CHHHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHhcCChHHHHHHHhhcCC--C--Cc----ccHHHHHHHHHh
Q 041183 392 SLKQAMQVHSHIIKSGFL------LD--DSMISCLITTYGKCNALNESKRVLSEIDK--K--NA----VHINALASVLVY 455 (760)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~ 455 (760)
+++++...+......--. +. ......+...+...|++++|...+++... + +. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 667766666655432100 00 11111222334455666666555554322 1 11 122333344455
Q ss_pred cCChhHHHHHHHHHHhCCCC---C--ChhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041183 456 ASCHAEALELYRTIWGSCRE---V--NGSTFSIVLKACAAMTDLEQGKAIHCLALK 506 (760)
Q Consensus 456 ~~~~~~A~~~~~~m~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 506 (760)
.|++++|...+++....... + ...++..+...+...|+++.|...+.+...
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555554321100 0 011223333444555555555555554433
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.64 E-value=6e-07 Score=75.49 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=100.7
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLY 691 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 691 (760)
+....-.+...+...|++++|.++|+-.. .+-+...|..|...+...|++++|+..|.++..++|+++.++.+++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34556667777888999999999998873 4556778899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 041183 692 ASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVA 756 (760)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (760)
...|+.+.|++.|+...... ..||+.+++...-.++-..+.|
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999877542 1378888888777766665554
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.63 E-value=0.00027 Score=66.34 Aligned_cols=301 Identities=14% Similarity=0.073 Sum_probs=197.6
Q ss_pred HHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHH---HHHHhcCCccHHHHHHHHHHHCCCCCCHhhHH-HHHHHhcCcC
Q 041183 316 ALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMI---AGYSENGFFNQALDMFCHMLEFSLIPNGYTMA-SILEAVSNSK 391 (760)
Q Consensus 316 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~ 391 (760)
-+...+...|++.+|+.-|...++-|+..|.++. ..|...|+..-|+.-+.+..+ ++||-..-. --...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3455566779999999999999988888888775 467888999999988888877 477754322 2234577899
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 392 SLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWG 471 (760)
Q Consensus 392 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 471 (760)
.++.|..-|+.++++...-+ ....++.+.-..++-+.+. ..+..+...|+...|+.....+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~l~------------~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWVLV------------QQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHHHH------------HHHHHHhcCCchhhHHHHHHHHHh
Confidence 99999999999987643211 1111122211111111111 122334456666666666666665
Q ss_pred CCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChH----
Q 041183 472 SCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR--DSLA---- 545 (760)
Q Consensus 472 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~---- 545 (760)
-. ..|...+..-..+|...|++..|+.-++...+..- .+....--+-..+...|+.+.++...++..+ ||..
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 42 33555556666667777777777766666555432 3444444556666777777777776666543 2221
Q ss_pred hHHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H---HHHHHHHHHhccCcHHHHHHHHHHhhhhcCC
Q 041183 546 GWNAM---------MMGYAQHGCYHEVSNLFNKMSKFGVKPDE--I---TYLAVLTSCCHAGLVREARTYLSCMSDLHGL 611 (760)
Q Consensus 546 ~~~~l---------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (760)
.|-.+ +......++|.++++..+...+. .|.. . .+..+-.++...|.+.+|++.-.++.+ +
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~ 336 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---I 336 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---c
Confidence 12111 12334567888898888888874 4542 2 334444667788999999999999987 6
Q ss_pred CCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041183 612 IPQ-LEHYACIVDLLGRVGLLEGAKMTIDQMP 642 (760)
Q Consensus 612 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (760)
.|+ +.++.--..+|.-...++.|+.-|+.+.
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 665 8888888999999999999999999884
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.00023 Score=83.36 Aligned_cols=327 Identities=10% Similarity=-0.021 Sum_probs=159.7
Q ss_pred hhcCCChHHHHHHHhcCCC----CCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCC--C----CCCH--hhHHHHHHHhc
Q 041183 321 YGKCGQVNDARSIFDYLIF----KDSVSWNSMIAGYSENGFFNQALDMFCHMLEFS--L----IPNG--YTMASILEAVS 388 (760)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~----~p~~--~~~~~ll~~~~ 388 (760)
+...|+++.+...++.++. .+..........+...|+++++...+......- . .|.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445667777777666531 123333344455567788888888887765431 1 0111 11122223455
Q ss_pred CcCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhcCCC-----C----cccHHHHHHHHHh
Q 041183 389 NSKSLKQAMQVHSHIIKSGFLLDD----SMISCLITTYGKCNALNESKRVLSEIDKK-----N----AVHINALASVLVY 455 (760)
Q Consensus 389 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~ 455 (760)
..|+++.|...++.....-...+. ...+.+...+...|++++|...+.+.... + ......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 678888888888877653111111 23345556667788888888877765421 1 1233445566777
Q ss_pred cCChhHHHHHHHHHHhC----CCC--C-ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHHHHhc
Q 041183 456 ASCHAEALELYRTIWGS----CRE--V-NGSTFSIVLKACAAMTDLEQGKAIHCLALKARY--DQDIFVESAVIDMYCKC 526 (760)
Q Consensus 456 ~~~~~~A~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 526 (760)
.|++++|...+++.... +.. + ....+..+...+...|+++.|...+.+.....- .+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------- 610 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ------------- 610 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH-------------
Confidence 88888888888776442 111 0 111222233334444555555555555433110 0000
Q ss_pred CCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHH--HHHHHHHhccCcHHHHHH
Q 041183 527 GTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG--VKP--DEITY--LAVLTSCCHAGLVREART 600 (760)
Q Consensus 527 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p--~~~~~--~~l~~~~~~~g~~~~A~~ 600 (760)
....+..+...+...|++++|...+++..... ... ..... ...+..+...|+.+.|..
T Consensus 611 ----------------~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 611 ----------------QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred ----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 01112223334444555555555554443210 000 00000 001122334566666666
Q ss_pred HHHHhhhhcCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 041183 601 YLSCMSDLHGLIPQ---LEHYACIVDLLGRVGLLEGAKMTIDQMP-------IPPD-AHIWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 601 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~ 669 (760)
.+..... ...... ...+..+..++...|++++|...+++.. ..++ ..+...+..++...|+.++|...
T Consensus 675 ~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 675 WLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6555433 110000 0112345555666666666666665541 1111 22344455556667777777777
Q ss_pred HHHHhccC
Q 041183 670 GSKLLELQ 677 (760)
Q Consensus 670 ~~~~~~~~ 677 (760)
+.+++++.
T Consensus 754 L~~Al~la 761 (903)
T PRK04841 754 LLEALKLA 761 (903)
T ss_pred HHHHHHHh
Confidence 77777654
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=7.6e-06 Score=74.74 Aligned_cols=287 Identities=13% Similarity=0.097 Sum_probs=146.1
Q ss_pred HhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCc--ccHH-HHHHHH
Q 041183 377 GYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNA--VHIN-ALASVL 453 (760)
Q Consensus 377 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~-~l~~~~ 453 (760)
.--+.+++..+.+..++..|.+++..-.+...+ +....+.|..+|-...++..|...++++...-+ .-|. .-...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 334666677777777888888877766555322 556667777778888888888888877765322 1222 123445
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHH
Q 041183 454 VYASCHAEALELYRTIWGSCREVNGSTFSIVLKA--CAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIED 531 (760)
Q Consensus 454 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 531 (760)
-+.+.+..|+.+...|.+. |....-..-+.+ ....+++. .
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~-----------------------------------g 130 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLP-----------------------------------G 130 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCc-----------------------------------c
Confidence 5666777777777666442 111111111111 12233444 4
Q ss_pred HHHHHHhcC-CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcC
Q 041183 532 AKRAFRKIC-RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHG 610 (760)
Q Consensus 532 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 610 (760)
+..+++... +.+..+.+...-...+.|+++.|++-|+...+-|--.....|+..+. ..+.|+++.|++...++.+ +|
T Consensus 131 ~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIie-RG 208 (459)
T KOG4340|consen 131 SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIE-RG 208 (459)
T ss_pred hHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHH-hh
Confidence 444444443 22233333333333444555555555544444322222233433322 2233444555554444444 22
Q ss_pred CC-------------CCh---------------hHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHH
Q 041183 611 LI-------------PQL---------------EHYACIVDLLGRVGLLEGAKMTIDQMP----IPPDAHIWQSLLSACT 658 (760)
Q Consensus 611 ~~-------------~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~ 658 (760)
++ ||+ ..++.-...+.+.|+++.|.+.+-.|+ ...|+.|...+.-. -
T Consensus 209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n 287 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-N 287 (459)
T ss_pred hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-c
Confidence 21 110 112222233355667777777777774 34455665544222 1
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHH
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
..+++....+-+.-.++++|=.+.++..+..+|++..-++-|-+++-
T Consensus 288 ~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 23445555555556666666666777777777777766666665543
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=9.5e-06 Score=89.28 Aligned_cols=199 Identities=16% Similarity=0.146 Sum_probs=158.2
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 041183 510 DQDIFVESAVIDMYCKCGTIEDAKRAFRKICR--------DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEIT 581 (760)
Q Consensus 510 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 581 (760)
|-+...|...|.-....++.++|++++++... .-...|.+++......|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 34567777788888888888888888877631 12346888888777778888888999998873 223356
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C---CCCCHHHHHHHHHHH
Q 041183 582 YLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P---IPPDAHIWQSLLSAC 657 (760)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~~~~~l~~~~ 657 (760)
|..|...|.+.+.+++|.++|+.|.++++ -....|..+++.+.++.+-+.|..++.++ . .........-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888889999999999999999988544 66778888999999999989999888877 2 222455566666777
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 658 TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
.+.||.+++..+|+..+.-.|.....|...+..-.+.|+.+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999999999999999999887764
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=0.00012 Score=75.17 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=104.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh--HhHHHHHHHHH
Q 041183 483 IVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR-----DSL--AGWNAMMMGYA 555 (760)
Q Consensus 483 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~l~~~~~ 555 (760)
.+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...+++... ++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445566666666666666666654 33455666666777777777777777765532 111 13445667777
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCcHHHHHHH--H-HHhhhhcCCCCChhHHHHHHHHhhhc
Q 041183 556 QHGCYHEVSNLFNKMSKFGV-KPDEITY-L--AVLTSCCHAGLVREARTY--L-SCMSDLHGLIPQLEHYACIVDLLGRV 628 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 628 (760)
..|++++|..++++...... .+..... + .++.-+...|..+.+.+. + ...................+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 78888888888887754221 1111111 1 222223333432222222 1 11111000011112222456667788
Q ss_pred CChHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 629 GLLEGAKMTIDQMP--IPP---D------AHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 629 g~~~~A~~~~~~~~--~~p---~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
|+.++|..+++.+. ... . .........++...|+++.|.+.+..++.+.
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88888888887762 111 1 1222233344568899999999999988753
No 113
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=2.8e-05 Score=76.49 Aligned_cols=214 Identities=8% Similarity=-0.048 Sum_probs=142.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCH--HHH
Q 041183 490 AMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCG-TIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCY--HEV 563 (760)
Q Consensus 490 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a 563 (760)
..+..++|.....++++.. +-+..+|+.....+...| ++++++..++++. ..+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 3455666666666666654 233445555555555555 5677777777664 33444566555555555543 667
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc---CCh----HHHH
Q 041183 564 SNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV---GLL----EGAK 635 (760)
Q Consensus 564 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~ 635 (760)
+.+++++.+ ..| |...|+....++...|+++++++.++.+.+ .-+-+...|+....++.+. |.. +++.
T Consensus 128 l~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 128 LEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 888888887 556 456777777777788888888888888887 2333556666665555443 222 4566
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC--------------
Q 041183 636 MTIDQM-P-IPPDAHIWQSLLSACTIY----GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG-------------- 695 (760)
Q Consensus 636 ~~~~~~-~-~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------------- 695 (760)
++..++ . .+-|...|+.+...+... +...+|.....++...+|.++.++..|+.+|....
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 666444 3 455677888888888773 34567888999988889999999999999998643
Q ss_pred ----ChhHHHHHHHHHH
Q 041183 696 ----MWNDVGKLRKEMK 708 (760)
Q Consensus 696 ----~~~~A~~~~~~~~ 708 (760)
..++|.++++.+.
T Consensus 284 ~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 284 EELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccHHHHHHHHHHHH
Confidence 2367888888774
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=5.8e-06 Score=74.82 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=104.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhh
Q 041183 548 NAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLG 626 (760)
Q Consensus 548 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 626 (760)
..+-..+...|+-+....+...... ..| |.......+....+.|++..|...+++... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 5555666666777766666665443 233 334444566667777777777777777766 55666777777777777
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 041183 627 RVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLR 704 (760)
Q Consensus 627 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (760)
+.|+.++|..-|.+. . ...++...+.+...+.-.||.+.|..++..+....|.+..+-..|+.+....|++++|.++.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777776665 2 33455666777777777777777777777777777777777777777777777777777664
Q ss_pred H
Q 041183 705 K 705 (760)
Q Consensus 705 ~ 705 (760)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=1.7e-05 Score=71.90 Aligned_cols=122 Identities=20% Similarity=0.091 Sum_probs=63.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM--PIPPDAHIWQSLLSACTIYGN 662 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 662 (760)
+-.++...|+-+....+...... ..+.+......++....+.|++.+|...+.+. ..++|...|+.+..+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33444445555555544444332 22333344444555555555555555555555 244555555555555555555
Q ss_pred hhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 663 IDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
+++|...|.+++++.|+++.++..++..|.-.|+.+.|..++.+..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555543
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=4.3e-05 Score=83.14 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 041183 577 PDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPP-DAHIWQSL 653 (760)
Q Consensus 577 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 653 (760)
.+...+..|.....+.|.+++|..+++.+.+ +.|+ ......++.++.+.+++++|...+++. ...| +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3566777777777888888888888888876 5565 455666777778888888888887777 3334 45556666
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 654 LSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 654 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..++...|++++|..+|+++....|+++.++..++.++...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677777888888888888888877877888888888888888888888888877653
No 117
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=5.2e-05 Score=74.60 Aligned_cols=186 Identities=13% Similarity=0.094 Sum_probs=138.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChHhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc-
Q 041183 521 DMYCKCGTIEDAKRAFRKICR---DSLAGWNAMMMGYAQHG-CYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGL- 594 (760)
Q Consensus 521 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~- 594 (760)
..+...++.++|+....++.. .+...|+....++...| ++++++..++++.+ ..|+. ..|+.-...+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCch
Confidence 344456778888888887753 34446776666777777 67999999999998 45643 555554444555565
Q ss_pred -HHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc---CCh----h
Q 041183 595 -VREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM--PIPPDAHIWQSLLSACTIY---GNI----D 664 (760)
Q Consensus 595 -~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~---~~~----~ 664 (760)
.+.+..+++.+.+ .-+-+...|.....++...|+++++++.++++ ..+.+..+|+.....+.+. |.. +
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888988887 33446788998889999999999999999998 2456778888887776554 223 4
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhc----CChhHHHHHHHHHHhC
Q 041183 665 LGLLAGSKLLELQPDNESTYVLLSNLYASA----GMWNDVGKLRKEMKEK 710 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 710 (760)
.++....+++.++|+|.++|..+..++... ++..+|.+.+.+..+.
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 688888899999999999999999999883 4556788887776553
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.2e-05 Score=80.75 Aligned_cols=243 Identities=12% Similarity=0.058 Sum_probs=148.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHH
Q 041183 454 VYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAK 533 (760)
Q Consensus 454 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 533 (760)
.+.|+..+|.=.|+..+... +-+...|..|-......++-..|+..+.+..+.. +-+..+.-.|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 34444444444444444332 1122344444444445555555555555555443 233444445555555555555555
Q ss_pred HHHHhcCCC------------ChHhHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 041183 534 RAFRKICRD------------SLAGWNAMMMGYAQHGCYHEVSNLFNK-MSKFGVKPDEITYLAVLTSCCHAGLVREART 600 (760)
Q Consensus 534 ~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 600 (760)
..+++.... +...-+. ..+..........++|-+ ....+..+|......|.-.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555543100 0000000 111111122333344444 3445544566666777777888899999999
Q ss_pred HHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 601 YLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 601 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
.|+.+.. +.| |-.+|+.|+..++...+.++|+..|.++ ...|. +..+..|.-+|...|.+++|...|-.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999987 666 5688999999999999999999999988 46676 5577888999999999999999999999875
Q ss_pred CC----------CchhHHHHHHHHHhcCChhHHHHH
Q 041183 678 PD----------NESTYVLLSNLYASAGMWNDVGKL 703 (760)
Q Consensus 678 p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 703 (760)
+. +..+|..|=.++.-.++.|-+..+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 53 124677777777777777654443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=8e-05 Score=77.06 Aligned_cols=216 Identities=9% Similarity=0.061 Sum_probs=176.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 041183 408 FLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKA 487 (760)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 487 (760)
.+|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 45555666778889999999999999999875 678889999999999999999988877 37888888888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHHHHHHHcCCHHHHH
Q 041183 488 CAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMMMGYAQHGCYHEVS 564 (760)
Q Consensus 488 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 564 (760)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-. .--..+|-.+.-+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777788888887765442 22233333445789999999998653 334568888888889999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 565 NLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 565 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
+.|..... ..||. ..|+.+-.+|.+.|+..+|...+.++.+ .+ .-+..+|...+....+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999888 78865 8899999999999999999999999998 44 555677888888899999999999999887
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=6.2e-05 Score=74.43 Aligned_cols=167 Identities=21% Similarity=0.191 Sum_probs=108.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcC
Q 041183 552 MGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLA-VLTSCCHAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVG 629 (760)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 629 (760)
..+...|++++|+..++.+.. -.|+...|.. ....+.+.++.++|.+.++.+.. ..|+ ....-.+..+|.+.|
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 334456777777777777776 3565544443 34567777778888887777776 4454 455566777777788
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 630 LLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 630 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
++.+|+.++++.. .+.|+..|..|..+|...|+..+|..... ..|.-.|+|++|+..+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHH
Confidence 8887777777762 55667777888888877777666655543 3566678888888888877
Q ss_pred HhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 041183 708 KEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVATAK 759 (760)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (760)
.++.-...+.+ .....+-..+.+.+++.|+..|
T Consensus 452 ~~~~~~~~~~~-------------------aR~dari~~~~~~~~~~k~~~k 484 (484)
T COG4783 452 SQQVKLGFPDW-------------------ARADARIDQLRQQNEEFKPYTK 484 (484)
T ss_pred HHhccCCcHHH-------------------HHHHHHHHHHHHHHHHHHhhcC
Confidence 76543333322 1234455566666666666544
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=3.1e-05 Score=70.73 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=111.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 041183 520 IDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREA 598 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 598 (760)
+-.|...|+++.+......+..+. ..+...++.++++..+++..+ ..| |...|..+...|...|+++.|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777766655543332221 011125666777778887777 455 567788888889999999999
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHHh-hhcCC--hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 041183 599 RTYLSCMSDLHGLIP-QLEHYACIVDLL-GRVGL--LEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSK 672 (760)
Q Consensus 599 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 672 (760)
...|+...+ ..| +...+..+..++ ...|+ .++|.+++++.- .+.+..++..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887 444 577788888864 66676 589999999882 445677888888899999999999999999
Q ss_pred HhccCCCCchhHH
Q 041183 673 LLELQPDNESTYV 685 (760)
Q Consensus 673 ~~~~~p~~~~~~~ 685 (760)
++++.|++..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999886655443
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=8.7e-06 Score=70.03 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
.....++..+...|++++|.+.++.+ . .+.+...|..+...+...|+++.|...++++++..|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666666677777777776665 2 344566777777777777888888888888888888788888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 041183 694 AGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 694 ~g~~~~A~~~~~~~~~~ 710 (760)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777654
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=1.8e-05 Score=81.62 Aligned_cols=208 Identities=13% Similarity=0.007 Sum_probs=108.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChHhHHHHHHHHHHcCCHH
Q 041183 484 VLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC--RDSLAGWNAMMMGYAQHGCYH 561 (760)
Q Consensus 484 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 561 (760)
+...+...|-...|..+++++. .|..++.+|+..|+..+|..+..... +|+...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3344445555555555554433 23345555555555555555544332 344455555555554444455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 562 EVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
+|.++.+..... .-..+.....+.++++++.+.|+.-.+ -.+....+|-.+.-+..+.++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 555555433221 111111112234556666666655554 11223455555555556666666666666554
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 642 -PIPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 642 -~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
...| +...|+.+-.+|.+.++..+|...++++++-+-++..+|.....+..+.|.|++|++.+.++.+
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 2233 3445666666666666666666666666665555566666666666666666666666666554
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.38 E-value=5.1e-07 Score=54.74 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 610 GLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 610 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=2e-05 Score=75.47 Aligned_cols=183 Identities=13% Similarity=0.042 Sum_probs=128.2
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---chHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChH---
Q 041183 475 EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQD---IFVESAVIDMYCKCGTIEDAKRAFRKICR--D-SLA--- 545 (760)
Q Consensus 475 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~--- 545 (760)
......+..+...+...|+++.|...++++..... .+ ...+..+..++...|++++|...++++.+ | +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34455677788888999999999999999988652 22 24667788999999999999999998842 2 222
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhH
Q 041183 546 GWNAMMMGYAQH--------GCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEH 617 (760)
Q Consensus 546 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 617 (760)
.+..+..++.+. |++++|.+.|+++.. ..|+.......+..... ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~---~~~------~~~---------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY---LRN------RLA---------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH---HHH------HHH---------HH
Confidence 455566666654 788999999999988 46764322211111100 000 000 01
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP----IPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
...+...+.+.|++++|...+++.. ..| ....+..++.++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2356677888999999998888772 222 356888899999999999999998888877666
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=9.8e-05 Score=80.39 Aligned_cols=137 Identities=10% Similarity=0.011 Sum_probs=93.7
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 041183 543 SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI 621 (760)
Q Consensus 543 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 621 (760)
+...+-.|.....+.|++++|..+++...+ +.|+. .....+...+.+.+++++|+...+.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355666677777777777777777777777 66754 4455566677777777777777777766 233345666667
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNEST 683 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 683 (760)
..++.+.|++++|..+|+++. .+.+..++.++..++...|+.++|...|+++++...+-...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 777777777777777777773 33346677777777777788888888888777755333333
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.00016 Score=80.13 Aligned_cols=218 Identities=15% Similarity=0.181 Sum_probs=171.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC---CchHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Ch-HhHHHH
Q 041183 477 NGSTFSIVLKACAAMTDLEQGKAIHCLALKA-RYDQ---DIFVESAVIDMYCKCGTIEDAKRAFRKICRD-SL-AGWNAM 550 (760)
Q Consensus 477 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~~~~~l 550 (760)
+...|..-|.-....++.++|+++.+++... ++.- -...|.++++.-..-|.-+...++|+++++- |. ..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456777888889999999999999998863 2221 2457788888888888889999999998754 33 468899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHhhh
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ---LEHYACIVDLLGR 627 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 627 (760)
...|.+.+++++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+ .-|. .......+..-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhh
Confidence 99999999999999999999986 445567788888999999999999999999988 3333 4455556666678
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCchhHHHHHHHHHhc-CChh
Q 041183 628 VGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ--PDNESTYVLLSNLYASA-GMWN 698 (760)
Q Consensus 628 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~-g~~~ 698 (760)
.|+.+.+..+|+..- .+.....|+.++..-.++|+.+.+..+|++++.+. |.....++..-.-|.+. |+-+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999999883 44567899999999999999999999999999964 65666655555455544 4443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00021 Score=70.80 Aligned_cols=178 Identities=15% Similarity=0.057 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHhcC------CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 041183 527 GTIEDAKRAFRKIC------RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREART 600 (760)
Q Consensus 527 ~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 600 (760)
.++.++...-+.++ .++...+...+.+......-..+...+. +... -.-...-|..-+ .+...|.++.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 34556666666664 2344445555554433322222222222 2221 011223344333 4557899999999
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 601 YLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
.++.+.. ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+..+..++.+.|++.+|+..++....-+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999987 45556777778889999999999999999998 35565 67788899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 679 DNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 679 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+++..|..|+.+|..+|+..+|....-+...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999988776653
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00043 Score=62.91 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 041183 517 SAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCH----A 592 (760)
Q Consensus 517 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~ 592 (760)
..-...|+..|++++|++.... ..+....-.=+..+.+..+.+-|.+.+++|.+ + -+..|.+-|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccc
Confidence 3334557777888888887776 23333333334555666777888888888876 2 344666666665543 4
Q ss_pred CcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-hHHHHH
Q 041183 593 GLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM--PIPPDAHIWQSLLSACTIYGNI-DLGLLA 669 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~A~~~ 669 (760)
+.+..|.-+|+++.+ ..+|++.+.+....++...|++++|..++++. +...++.+...++-.-...|.. +--.+.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 457778888888876 57777777777777778888888888887777 2444566665555554444444 444566
Q ss_pred HHHHhccCCCCc
Q 041183 670 GSKLLELQPDNE 681 (760)
Q Consensus 670 ~~~~~~~~p~~~ 681 (760)
+.+.....|..+
T Consensus 265 l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 265 LSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhcCCcch
Confidence 666666667443
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00027 Score=64.13 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=117.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHh----
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLL---- 625 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 625 (760)
-...|+..|++++|++..+.. -..+....+ ...+.+..+.+-|.+.++.|.+ +. +-.+.+.|..++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLA 183 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHh
Confidence 345688899999999988762 223333333 3445678889999999999987 22 334555555554
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHH-H
Q 041183 626 GRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVG-K 702 (760)
Q Consensus 626 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~ 702 (760)
...+.+.+|.-+|++|. .+|++.+.+-...++...|++++|+.+++.++..+|+++.++..++-+-...|.-.++. +
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 45668999999999993 78999999999999999999999999999999999999999999999989999886665 4
Q ss_pred HHHHHHh
Q 041183 703 LRKEMKE 709 (760)
Q Consensus 703 ~~~~~~~ 709 (760)
.+.+++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 5555553
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=1.4e-05 Score=80.03 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=98.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 041183 581 TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM--PIPPDAHIWQSLLSACT 658 (760)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 658 (760)
....|+..+...++++.|.++|+++.+ ..|+ ....++..+...++-.+|++++++. ..+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~---~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE---RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh---cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555666677788888888888876 2244 3445777777777778888887776 23446667777778889
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
..++++.|+.+.+++.++.|++..+|..|+.+|.+.|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999875
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=2.8e-05 Score=66.88 Aligned_cols=115 Identities=11% Similarity=0.022 Sum_probs=90.7
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-
Q 041183 566 LFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P- 642 (760)
Q Consensus 566 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 642 (760)
.++++.. ..|+. .....+...+...|++++|...++.+.. ..+.+...+..+...+...|++++|..+++.. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45643 4556666778889999999999998877 23446788888899999999999999988877 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 041183 643 IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTY 684 (760)
Q Consensus 643 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 684 (760)
.+.+...+..+...+...|+++.|...+++++++.|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 455677888888899999999999999999999999766543
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00028 Score=63.52 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=99.1
Q ss_pred ccCCHHHHHHHHHHHHH---cC-CCCCc-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-HhHHHHHHHHHHcCCHH
Q 041183 490 AMTDLEQGKAIHCLALK---AR-YDQDI-FVESAVIDMYCKCGTIEDAKRAFRKICR--DSL-AGWNAMMMGYAQHGCYH 561 (760)
Q Consensus 490 ~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~ 561 (760)
...+.++..+++..+.. .| ..++. ..|..++-+....|+.+.|...++.+.. |+. ..-..-..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 34566667666666654 22 22332 2334444455556666666666655431 111 11111111223345666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 562 EVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
+|+++|+.+.+.. +.|..++..=+-..-..|+..+|++-+....+ .+..|...|..+...|...|++++|.--++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 6666666666542 12344454444444455555566665555555 35556666666666666666666666666665
Q ss_pred C-CCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCchhHHHHHH
Q 041183 642 P-IPP-DAHIWQSLLSACTIYG---NIDLGLLAGSKLLELQPDNESTYVLLSN 689 (760)
Q Consensus 642 ~-~~p-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 689 (760)
- ..| ++..+..+...+...| +.+.|..+|.+++++.|.+...++.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 2 223 3334444444433222 4456666666666666655444444433
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00051 Score=61.96 Aligned_cols=123 Identities=11% Similarity=-0.025 Sum_probs=54.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcCC
Q 041183 483 IVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRD---SLAGWNAMMMGYAQHGC 559 (760)
Q Consensus 483 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 559 (760)
.++-+....|..+.|...++.+...- +-+..+-..-...+-..|++++|.++++.+.+. |.+++-.-+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 33344444455555555555544432 222222222222333445555555555544322 22333333333444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 560 YHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 560 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.++++.-
T Consensus 136 ~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 44444444444442 333445555555555555555555555555543
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00033 Score=77.12 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
+.-+...|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334444555566666666666666666666666666666655
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00046 Score=75.98 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=127.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcC
Q 041183 479 STFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHG 558 (760)
Q Consensus 479 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 558 (760)
..+..|+..+...++++.|.++.+...+.. +-....|-.+...+...++++++..+ .++..+....
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 355666666666677777777766555543 22334444444456666665554433 2333344444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 041183 559 CYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTI 638 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (760)
++..+..++..|.+. .-+...+..+..+|.+.|+.++|..+|+++.+ .. +-|+...+.++..|... +.++|.+++
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 554444455555552 22345667777777788888888888888877 22 34567777777777777 777877777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH--------------------HHHHHHHHhcCChh
Q 041183 639 DQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTY--------------------VLLSNLYASAGMWN 698 (760)
Q Consensus 639 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--------------------~~l~~~~~~~g~~~ 698 (760)
.++ +..+...+++..+.++++++++.+|++...+ .-+-..|...++|+
T Consensus 173 ~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 173 KKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 654 2235566677777777777777777654442 23336677788999
Q ss_pred HHHHHHHHHHhCCCC
Q 041183 699 DVGKLRKEMKEKFLC 713 (760)
Q Consensus 699 ~A~~~~~~~~~~~~~ 713 (760)
++..+++.+.+....
T Consensus 241 ~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 241 EVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999876443
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=4.8e-05 Score=76.85 Aligned_cols=100 Identities=16% Similarity=0.026 Sum_probs=54.9
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChh
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNID 664 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~ 664 (760)
..+...|+++.|+..|+++.+ ..+-+...|..+..+|.+.|++++|+..++++ . .+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344455666666666666655 12223455555555566666666666665555 1 2234445555555555666666
Q ss_pred HHHHHHHHHhccCCCCchhHHHHH
Q 041183 665 LGLLAGSKLLELQPDNESTYVLLS 688 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~~l~ 688 (760)
+|+..++++++++|+++.....+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH
Confidence 666666666666665555544443
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=3.8e-05 Score=64.35 Aligned_cols=94 Identities=13% Similarity=0.025 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHH
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP-IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN---ESTYVLLS 688 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 688 (760)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++++....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455555666666666666666551 1222 3345556666777777777777777777766653 45677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 041183 689 NLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 689 ~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.4e-06 Score=51.40 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=32.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 041183 145 VAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNE 179 (760)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 179 (760)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 140
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.09 E-value=1e-05 Score=59.57 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=48.0
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 658 TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
...|++++|++.++++++..|++..+...++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999988766
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.06 E-value=1.2e-05 Score=59.40 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 041183 646 DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG-MWNDVGKLRKEMKEK 710 (760)
Q Consensus 646 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 710 (760)
++.+|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|+..+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788999999999999999999999999999999999999999999999 799999999987653
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=6.9e-06 Score=63.38 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=60.1
Q ss_pred cCChHHHHHHHHhCC-CC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHH
Q 041183 628 VGLLEGAKMTIDQMP-IP---PDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKL 703 (760)
Q Consensus 628 ~g~~~~A~~~~~~~~-~~---p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 703 (760)
.|++++|+.+++++- .. |+...+..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467777777777762 12 2455666788888999999999999988 777777778888889999999999999999
Q ss_pred HHH
Q 041183 704 RKE 706 (760)
Q Consensus 704 ~~~ 706 (760)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=7.6e-06 Score=50.70 Aligned_cols=35 Identities=40% Similarity=0.725 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCc
Q 041183 47 ITYNALISGLARFCQSGPALKLFDRLRYQGLRPDA 81 (760)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 81 (760)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=8.7e-06 Score=49.98 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=32.0
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 041183 144 NVAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLEL 177 (760)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 177 (760)
+.+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=8.7e-06 Score=49.97 Aligned_cols=34 Identities=41% Similarity=0.723 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC
Q 041183 46 IITYNALISGLARFCQSGPALKLFDRLRYQGLRP 79 (760)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 79 (760)
+.+|+.+|.+|++.|+++.|+.+|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00018 Score=62.46 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=61.2
Q ss_pred cCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhH
Q 041183 592 AGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDA----HIWQSLLSACTIYGNIDL 665 (760)
Q Consensus 592 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~ 665 (760)
.++...+...++.+.++++-.+ .....-.+...+...|++++|...|+... ..|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555211111 12223334455555566666666665552 12222 233445556666677777
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 666 GLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 666 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
|+..++... -.|-.+..+..+|.+|.+.|++++|+..|++
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777765532 2233556667777777777777777777765
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.98 E-value=2.2e-05 Score=57.10 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=53.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|+.+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46678899999999999999999999999999999999999999999999999987653
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=7.2e-05 Score=59.61 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=76.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG 695 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 695 (760)
+..++..+...|++++|...++++ . .+.+...+..+...+...++++.|.+.++++....|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888876 2 23344677778888888899999999999999999988889999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 041183 696 MWNDVGKLRKEMKEK 710 (760)
Q Consensus 696 ~~~~A~~~~~~~~~~ 710 (760)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999887654
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00028 Score=70.87 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGL 594 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 594 (760)
...|+..+...++++.|.++|+++.+.++.....++..+...++-.+|++++++..+. .| +...+..-...|.+.++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3445566666778888888888887666666667777777788888888888888863 45 44555555667888888
Q ss_pred HHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041183 595 VREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP 642 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 642 (760)
++.|+.+.+++.+ ..| +..+|..|+.+|.+.|++++|+-.+..++
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999988887 555 45788889999999999999998888886
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00012 Score=67.83 Aligned_cols=107 Identities=22% Similarity=0.157 Sum_probs=77.9
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 041183 589 CCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD-AHIWQSLLSACTIYGNIDL 665 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 665 (760)
+.+.+++.+|+..|.++.+ +.| |...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456777778877777776 444 5666677777788888888887777766 34444 4578888888888899999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHhcCChh
Q 041183 666 GLLAGSKLLELQPDNESTYVLLSNLYASAGMWN 698 (760)
Q Consensus 666 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 698 (760)
|++.|+++++++|+|......|-++-.+.+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999988866666665555444444
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.062 Score=57.93 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCh---hHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 041183 649 IWQSLLSACTIYGNI---DLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEP 716 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (760)
+-+.|+..+.+.+|. -+|+-+++......|.|..+-..++.+|.-.|-...|.+.++.+--+.|+-+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 446777888877765 47888888888899999999999999999999999999999988777666555
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.87 E-value=0.00064 Score=58.95 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC--hhHHHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE----ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ--LEHYAC 620 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ 620 (760)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.. ....|+ ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHH
Confidence 34444444 367777777777777774 3332 2233344667778888888888888877 232222 234455
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 041183 621 IVDLLGRVGLLEGAKMTIDQMP-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLL 674 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 674 (760)
|..++...|++++|...++... ....+..+......+...|++++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6777788888888888887764 23344556667777888888888888888763
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00039 Score=65.13 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=89.6
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCCCchhHH
Q 041183 611 LIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIY---GNIDLGLLAGSKLLELQPDNESTYV 685 (760)
Q Consensus 611 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~ 685 (760)
.+-|...|..|...|...|+...|...|.+.. .++++..+..+..++... .+..++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45578899999999999999999999998873 456777777777775443 3557999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 041183 686 LLSNLYASAGMWNDVGKLRKEMKEKFLCKEP 716 (760)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 716 (760)
.|+..+..+|++.+|...|+.|.+.....+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987654444
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0015 Score=63.22 Aligned_cols=152 Identities=10% Similarity=0.009 Sum_probs=100.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHhhhhcCCCCChhH-------------
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVL--TSCCHAGLVREARTYLSCMSDLHGLIPQLEH------------- 617 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------- 617 (760)
++.-.|++++|.+.--...+ +.+.. .+...+ .++.-.++.+.|...|++... ..|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilk--ld~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILK--LDATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHh--cccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 44556777777666655554 22221 122222 234455667777777776655 4444221
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHH
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQM-P-----IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLY 691 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 691 (760)
+..=..-..+.|++.+|.+.+.+. . ..|+...|.....+..+.|+.++|+.--+.++.++|.-..+|...+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 122233345678888888888776 2 4455666766677777888888888888888888888888888888888
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 041183 692 ASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 692 ~~~g~~~~A~~~~~~~~~~ 710 (760)
...++|++|.+.+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888899988888876643
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.83 E-value=0.0025 Score=54.53 Aligned_cols=134 Identities=9% Similarity=0.043 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC---CHHHH
Q 041183 575 VKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPP---DAHIW 650 (760)
Q Consensus 575 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 650 (760)
.-|....-..|..++.+.|+..+|...|++... .-+.-|....-.+..+....+++..|...++++. -+| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 567777777788889999999999999999887 3345577888888888999999999998888772 122 23445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 651 QSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 651 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..+.+.+...|+++.|+..|+.++.--| ++..-...+..+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5677889999999999999999999888 7777778888899999999888766665543
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.80 E-value=0.082 Score=57.06 Aligned_cols=156 Identities=13% Similarity=-0.012 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 041183 546 GWNAMMMGYAQHGCYH---EVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI 621 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 621 (760)
+-+.|+..+.+.++.. +|+-+++.-.. ..| |..+-..++..|+-.|-+..|.+.|+.+.- ..+..|...|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-H
Confidence 3466677777777655 34444444444 234 344555566777777888888888877765 34555543331 2
Q ss_pred HHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CchhHHHHHHHHH
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP-----IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD----NESTYVLLSNLYA 692 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~ 692 (760)
...+.-.|++..+...+.... ...+..- +|....+.|.+....+...--.++.-. -..+-........
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~ 590 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLC 590 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445566666666665541 1111111 233334556665555444332233211 1223334555666
Q ss_pred hcCChhHHHHHHHHHH
Q 041183 693 SAGMWNDVGKLRKEMK 708 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~ 708 (760)
..++.++-...++.|.
T Consensus 591 ~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 591 NADRGTQLLKLLESMK 606 (932)
T ss_pred hCCcHHHHHHHHhccc
Confidence 7777777777777765
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.77 E-value=0.00046 Score=58.69 Aligned_cols=91 Identities=8% Similarity=-0.068 Sum_probs=77.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 619 ACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
-....-+...|++++|..+|.-+. .+-++.-|..|...+...++++.|+..|..+..++++||.++++.+.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 344445567888888888888763 345667788888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 041183 697 WNDVGKLRKEMKE 709 (760)
Q Consensus 697 ~~~A~~~~~~~~~ 709 (760)
.+.|+..|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.77 E-value=0.044 Score=53.07 Aligned_cols=249 Identities=13% Similarity=0.142 Sum_probs=166.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHH
Q 041183 455 YASCHAEALELYRTIWGSCREVNGS--TFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDA 532 (760)
Q Consensus 455 ~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 532 (760)
-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|..+-+..-+.. +.-.......+...|..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 356666666666666542 2222 23334444567788888888888776654 23467778889999999999999
Q ss_pred HHHHHhc-----CCCChH--hHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHH
Q 041183 533 KRAFRKI-----CRDSLA--GWNAMMMGYA---QHGCYHEVSNLFNKMSKFGVKPDEI-TYLAVLTSCCHAGLVREARTY 601 (760)
Q Consensus 533 ~~~~~~~-----~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 601 (760)
+++++.- .+++.. .-..|+.+-. -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 9998754 344443 1222222211 12245566666555555 778763 344456789999999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 602 LSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAK----MTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
++.+.+ ..|.+.++.. ..+.+.|+..... +-++.|+ +.+.........+....|++..|..-.+.+....
T Consensus 286 lE~aWK---~ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 286 LETAWK---AEPHPDIALL--YVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHh---cCCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 999987 5566655433 3345666543321 2233343 4556677788888899999999999999999999
Q ss_pred CCCchhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCCce
Q 041183 678 PDNESTYVLLSNLYASA-GMWNDVGKLRKEMKEKFLCKEPGY 718 (760)
Q Consensus 678 p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 718 (760)
| ...+|..|+.+-... |+-.+++..+-+..+. ..+|.|
T Consensus 360 p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 360 P-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 9 888899999887766 9999999988876653 344443
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.76 E-value=0.00013 Score=54.46 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 654 LSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 654 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
...+...++++.|.+++++++.++|+++..+...+.++.+.|++++|...+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999988653
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00038 Score=58.16 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=66.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 041183 582 YLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPD----AHIWQSLLS 655 (760)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 655 (760)
+..+...+.+.|++++|.+.|..+.+...-.+ ....+..++.++.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34455556666677777776666665211111 12345556666777777777777776652 2222 456777777
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 656 ACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 656 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
++...|+.+.|...++++++..|+++.+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 8888889999999999999888877655443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.00031 Score=63.05 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQMP-IPP---D-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL 690 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 690 (760)
..+..++..+...|++++|...|++.- ..| + ...+..+...+...|++++|...++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 445556666666666666666666551 112 1 35677888888889999999999999999999889999999999
Q ss_pred HHhcCC--------------hhHHHHHHHHHHhC
Q 041183 691 YASAGM--------------WNDVGKLRKEMKEK 710 (760)
Q Consensus 691 ~~~~g~--------------~~~A~~~~~~~~~~ 710 (760)
+...|+ +++|.+++++..+.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 988777 45566666655543
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.74 E-value=0.066 Score=54.30 Aligned_cols=180 Identities=13% Similarity=0.076 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CchHHHHHHHHHHhcCCHHHHHHHHH
Q 041183 459 HAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQ-DIFVESAVIDMYCKCGTIEDAKRAFR 537 (760)
Q Consensus 459 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 537 (760)
.+.....++++...-..--..+|...++...+..-+..|+.+|.++.+.+..+ ++.+++++++-|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555566665544333334567777888888888899999999999877666 7788888888766 577888888887
Q ss_pred hcC--CCChH-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhcC--
Q 041183 538 KIC--RDSLA-GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSCCHAGLVREARTYLSCMSDLHG-- 610 (760)
Q Consensus 538 ~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 610 (760)
.-. -+|.. --...+..+...++-..+..+|++....++.|+. ..|..++.-=..-|++..+.++-++......
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 543 23333 3455677777888888899999999888666654 7788888888888999988888877766322
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 041183 611 LIPQLEHYACIVDLLGRVGLLEGAKMTID 639 (760)
Q Consensus 611 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (760)
..+....-..+++-|.-.+.+.--..-++
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 22333334455566655554443333333
No 163
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.73 E-value=0.059 Score=53.43 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=86.7
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHH---HHHhccCc-HHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc--------C
Q 041183 563 VSNLFNKMSKFGVKPDE-ITYLAVL---TSCCHAGL-VREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV--------G 629 (760)
Q Consensus 563 a~~~~~~m~~~g~~p~~-~~~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 629 (760)
=+.+|+..... ..|. .....|+ .-+.+.|. -+.|+++++.+.+ +.+...-....+..+.+. .
T Consensus 361 yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 361 YLNLWEEIQSY--DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred HHHHHHHHHhh--cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666553 3343 2222333 33555665 7788888888877 444322222222222221 1
Q ss_pred ChHH---HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHH
Q 041183 630 LLEG---AKMTIDQMPIPP----DAHIWQSLLSA--CTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDV 700 (760)
Q Consensus 630 ~~~~---A~~~~~~~~~~p----~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 700 (760)
.+.+ -...+++.+++| +...-|.|..+ +..+|++.++.-.-.=..++.| ++.+|..+|.++....++++|
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHH
Confidence 1111 223333444333 34456677666 5678999999888887888999 999999999999999999999
Q ss_pred HHHHHHHH
Q 041183 701 GKLRKEMK 708 (760)
Q Consensus 701 ~~~~~~~~ 708 (760)
..++..+.
T Consensus 515 ~~~l~~LP 522 (549)
T PF07079_consen 515 WEYLQKLP 522 (549)
T ss_pred HHHHHhCC
Confidence 99998764
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00022 Score=66.26 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=78.3
Q ss_pred HHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhH
Q 041183 622 VDLLGRVGLLEGAKMTIDQM-PI-PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 699 (760)
..-+.+.+++++|+..|.++ .. +.|+..|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34456789999999999988 44 45677778888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 041183 700 VGKLRKEMKEK 710 (760)
Q Consensus 700 A~~~~~~~~~~ 710 (760)
|.+.|++..+-
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999876654
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.8e-05 Score=45.41 Aligned_cols=31 Identities=42% Similarity=0.832 Sum_probs=28.3
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 041183 145 VAYTAMVCGYVWNGEFDKSKEVFVEMRSLGL 175 (760)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 175 (760)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.0006 Score=68.98 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=80.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhh
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGR 627 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 627 (760)
....+...|++++|++.|+++.+ ..| +...|..+..++...|++++|+..++.+.+ +.| +...|..++.+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 35567788999999999999998 566 456777788899999999999999999988 444 57788899999999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 041183 628 VGLLEGAKMTIDQM-PIPPDAHIWQSLL 654 (760)
Q Consensus 628 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 654 (760)
.|++++|+..|+++ ...|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987 3455544444333
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0015 Score=69.03 Aligned_cols=139 Identities=15% Similarity=0.067 Sum_probs=78.2
Q ss_pred CChHhHHHHHHHHHH--c---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHhhh
Q 041183 542 DSLAGWNAMMMGYAQ--H---GCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHA--------GLVREARTYLSCMSD 607 (760)
Q Consensus 542 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 607 (760)
.+...|...+.+... . +....|..+|++..+ ..|+. ..+..+..++... +++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 344555555554322 2 235678888888888 57764 3344333222111 122333333333322
Q ss_pred hcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 041183 608 LHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 608 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
....+.+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1113334456666665556667777777777766 34566667777777777777777777777777777775553
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.00056 Score=61.19 Aligned_cols=93 Identities=12% Similarity=-0.105 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPP----DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSN 689 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 689 (760)
...|..++..+...|++++|...+++. ...| ...+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666667777778888888777766 1222 23478888899999999999999999999999999999999998
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 041183 690 LYA-------SAGMWNDVGKLRKEM 707 (760)
Q Consensus 690 ~~~-------~~g~~~~A~~~~~~~ 707 (760)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666654
No 169
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.60 E-value=0.11 Score=52.87 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=51.1
Q ss_pred cCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCC--CeeeHHHHHH
Q 041183 273 QINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFK--DSVSWNSMIA 350 (760)
Q Consensus 273 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 350 (760)
+-|..+|..+++-+... ..++++..++++.. .++.++..|..-|..-.+..+++..+++|.+.... +...|..-+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44666777777776655 77777777777663 23445567777777777777888888777766332 5556665554
Q ss_pred H
Q 041183 351 G 351 (760)
Q Consensus 351 ~ 351 (760)
-
T Consensus 95 Y 95 (656)
T KOG1914|consen 95 Y 95 (656)
T ss_pred H
Confidence 3
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0019 Score=57.91 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 041183 545 AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD--EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIV 622 (760)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 622 (760)
..+..+...+...|++++|...|++..+....|. ...+..+...+.+.|++++|...++++.+ ..+-+...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 3566677777777888888888887776432222 24566666777778888888888777776 1222355556666
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 623 DLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
.++...|+...+..-++.. ...+++|.+.++++..++|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666655544333221 123678889999999998866 4444444444443
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.099 Score=51.60 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 041183 520 IDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREAR 599 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 599 (760)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++..++... . -++..|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCHHHHH
Confidence 34444455555555555555555555555555555555555544433211 1 12244555555555555555555
Q ss_pred HHHHH
Q 041183 600 TYLSC 604 (760)
Q Consensus 600 ~~~~~ 604 (760)
.+...
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 54443
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=7.9e-05 Score=44.43 Aligned_cols=31 Identities=45% Similarity=0.792 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 041183 47 ITYNALISGLARFCQSGPALKLFDRLRYQGL 77 (760)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 77 (760)
++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.54 E-value=0.00083 Score=53.25 Aligned_cols=92 Identities=22% Similarity=0.157 Sum_probs=50.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGN 662 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~ 662 (760)
+...+...|++++|...++.+.+ ..+.+...+..+...+...|++++|.+.++.. . .+.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33444445555555555555544 11222344455555555556666666555554 1 22333456666666667777
Q ss_pred hhHHHHHHHHHhccCC
Q 041183 663 IDLGLLAGSKLLELQP 678 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p 678 (760)
++.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 7777777777766665
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.036 Score=57.15 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=134.6
Q ss_pred eHHHHHHHHHhcCCccHHHHHH---------HHHHHCCCCCCHhhHHHHHHHhcCcCCHHHH--HHHHHHHHHhCCCCCh
Q 041183 344 SWNSMIAGYSENGFFNQALDMF---------CHMLEFSLIPNGYTMASILEAVSNSKSLKQA--MQVHSHIIKSGFLLDD 412 (760)
Q Consensus 344 ~~~~li~~~~~~g~~~~a~~~~---------~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~~~~~~ 412 (760)
.+.+-+..|...|.+++|.++- +.+... ..+.-.++..=++|.+..+..-- ..-++++.+.|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 3444455566667666665431 111110 01222233444455555443332 2334566667777776
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccC
Q 041183 413 SMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMT 492 (760)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 492 (760)
.. +...++-.|++.+|.++|.+ +|....|+++|..|+-- -...-+...|
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g 684 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGSG 684 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcC
Confidence 53 34556677888888888754 45556677777665321 1122333444
Q ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 493 DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
+.++-..+.++-.+ +..+..--.+-.+.+...|+.++|..+. ..+|-.+-+.++-+++..
T Consensus 685 ~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred ChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch
Confidence 44443333332221 1111111123345555666666665543 223333444443333322
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHH---
Q 041183 573 FGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP-IPPDAH--- 648 (760)
Q Consensus 573 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~--- 648 (760)
.+..+...+...+.+...+..|-++|..|-. ..+++......++|++|..+-++.+ ..|++.
T Consensus 745 ----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~py 810 (1081)
T KOG1538|consen 745 ----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPY 810 (1081)
T ss_pred ----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchH
Confidence 2334444444555566666677777777654 3456677777777777777777764 333322
Q ss_pred --------HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 649 --------IWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 649 --------~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
-|...-.++.+.|+-.+|.+++++...
T Consensus 811 aqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233455666666777777766654
No 175
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.52 E-value=0.00045 Score=68.86 Aligned_cols=68 Identities=15% Similarity=-0.010 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch---hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 643 IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES---TYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 643 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.+.+...|+.+..+|...|++++|+..++++++++|++.. +|+.++.+|...|+.++|+..+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556788999999999999999999999999999998874 4999999999999999999999998875
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.51 E-value=0.00024 Score=51.51 Aligned_cols=61 Identities=26% Similarity=0.304 Sum_probs=47.0
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 621 IVDLLGRVGLLEGAKMTIDQM-PIPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
++..+.+.|++++|.+.|+++ ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677788888888888877 3334 567888888889999999999999999999999764
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00088 Score=65.20 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 041183 647 AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGY 726 (760)
Q Consensus 647 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (760)
..++..|...+.+.+++..|++.-.++++++|+|..+++.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 4567778888889999999999999999999999999999999999999999999999998876
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 041183 727 THHFYAGDSSHSQSKEIYKELIKLYEHMVAT 757 (760)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (760)
.|+-+++..+|.++..+++..
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHHH
Confidence 678888888888887777654
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00026 Score=54.54 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHH
Q 041183 557 HGCYHEVSNLFNKMSKFGV-KPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 557 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 634 (760)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+ ..| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3555556666665555311 01222333345555555566655555555 21 111 122333334555555555555
Q ss_pred HHHHH
Q 041183 635 KMTID 639 (760)
Q Consensus 635 ~~~~~ 639 (760)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.0014 Score=62.53 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=60.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHH
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP-IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD---NESTYVLLSN 689 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~ 689 (760)
|..-+..+.+.|++++|...|+..- ..|+ +..+..+...+...|++++|...|++++...|+ .+.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344566666666665551 2232 245566677777788888888888888876665 3556666677
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 041183 690 LYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 690 ~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++...|++++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 787888888888888877765
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.018 Score=54.54 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CCh-H---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKICR--DSL-A---GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSC 589 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~ 589 (760)
.....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++..+ ..|+. ..+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHH
Confidence 344555667888888888887742 222 1 123456777888888888888888887 34532 3333333332
Q ss_pred hc--c---------------CcH---HHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHH
Q 041183 590 CH--A---------------GLV---REARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHI 649 (760)
Q Consensus 590 ~~--~---------------g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 649 (760)
+. . .|. ..|.+.|+.+.+ -|=...-..+|...+..+...--..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~- 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY- 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-
Confidence 21 1 111 234444555444 2222233344444444332000011
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPD---NESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
-.....-|.+.|++.-|..-++.+++--|+ .+.++..++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113455688999999999999999997765 56677888999999999999999887654
No 181
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.44 E-value=0.15 Score=50.63 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=105.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHH-------HHHHHHHh-ccC---CHHHHHHHHHHHHHcCCCC
Q 041183 443 AVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTF-------SIVLKACA-AMT---DLEQGKAIHCLALKARYDQ 511 (760)
Q Consensus 443 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-------~~ll~~~~-~~~---~~~~a~~~~~~~~~~~~~~ 511 (760)
..++..++....+.++..+|-..+.-+.-. .|+...- ..+.+..+ ... +...-..+|..+...++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 445666777777777777777776665443 2222211 11112222 111 1222233344443333211
Q ss_pred CchHHHHH---HHHHHhcCC-HHHHHHHHHhcC---CCChHhHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCC
Q 041183 512 DIFVESAV---IDMYCKCGT-IEDAKRAFRKIC---RDSLAGWNAMM----MGYAQ---HGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 512 ~~~~~~~l---~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~g~~p 577 (760)
.....-| ..-+-+.|. -++|.++++.+. .-|...-|... ..|.+ ......-+.+-+-+.+.|+.|
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1111112 222334444 667777777663 33443322221 12211 123444445555556667766
Q ss_pred ----CHHHHHHHHHH--HhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 041183 578 ----DEITYLAVLTS--CCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQ 651 (760)
Q Consensus 578 ----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 651 (760)
+...-|.|.+| +...|++..+.-.-.-+.+ +.|++.+|..++-++....++++|.+++..+| |+..+++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 22334444433 5567888877755555544 77888888888888888888888888888876 5666665
Q ss_pred HH
Q 041183 652 SL 653 (760)
Q Consensus 652 ~l 653 (760)
+-
T Consensus 530 sk 531 (549)
T PF07079_consen 530 SK 531 (549)
T ss_pred HH
Confidence 43
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0043 Score=60.48 Aligned_cols=133 Identities=14% Similarity=0.197 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTS-CCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDL 624 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 624 (760)
+|..++....+.+..+.|..+|.+..+.+ ......|...... +...++.+.|.++|+...+ .++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 57778888888888999999999998542 1223334333333 3335677779999999988 466678888999999
Q ss_pred hhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 041183 625 LGRVGLLEGAKMTIDQMP-IPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 625 ~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 681 (760)
+.+.|+.+.|..+|++.- .-|. ...|...+.--.+.|+.+.+..+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999872 2233 35899999999999999999999999999988633
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.40 E-value=0.00012 Score=44.29 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=30.6
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChhHHH
Q 041183 670 GSKLLELQPDNESTYVLLSNLYASAGMWNDVG 701 (760)
Q Consensus 670 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 701 (760)
++++++++|+++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78899999999999999999999999999986
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.0014 Score=55.49 Aligned_cols=67 Identities=4% Similarity=-0.131 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 644 PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 644 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+.+......+...+...|++++|..+|+-+..++|.+...|..|+.++...|++++|+..+.+...-
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445566677778899999999999999999999999999999999999999999999999988755
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0022 Score=50.23 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCC-CCCHhhHHHHHHHhcCcC--------CHHHHHHHHHHHHHhCCCCChhHH
Q 041183 345 WNSMIAGYSENGFFNQALDMFCHMLEFSL-IPNGYTMASILEAVSNSK--------SLKQAMQVHSHIIKSGFLLDDSMI 415 (760)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 415 (760)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++...+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777999999999999999999 999999999999877543 356678899999999999999999
Q ss_pred HHHHHHHHh
Q 041183 416 SCLITTYGK 424 (760)
Q Consensus 416 ~~l~~~~~~ 424 (760)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00033 Score=51.36 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=32.3
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 627 RVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 627 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
..|++++|+++|+++ . .+.+...+..+..++.+.|++++|...++++....|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345555555555554 1 233455555556666666666666666666666666544444433
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.00055 Score=50.35 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYG-NIDLGLLAGSKLLELQP 678 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 678 (760)
++..|..++..+...|++++|+..|++. . .+.++..|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777888888888888888888877 2 3446778888888999998 79999999999999887
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.24 E-value=0.011 Score=62.80 Aligned_cols=134 Identities=14% Similarity=0.044 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhc--------CChHHHHHHHHh
Q 041183 575 VKPDEITYLAVLTSCCH--A---GLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRV--------GLLEGAKMTIDQ 640 (760)
Q Consensus 575 ~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 640 (760)
...|...|...+++... . +....|..+|+++.+ ..|+ ...|..+..++... ++...+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44577888888876433 2 347799999999988 6676 45555554444322 123344444444
Q ss_pred C----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 641 M----PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 641 ~----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
. ..+.++.+|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++......
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 1344567788887777788999999999999999999 789999999999999999999999999876543
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.23 E-value=0.003 Score=63.95 Aligned_cols=119 Identities=8% Similarity=0.122 Sum_probs=96.2
Q ss_pred CCCCchhHhHHHHhhhcCCChHHHHHHHhcCC-CC-----CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhH
Q 041183 307 FMEVVSIGNALISMYGKCGQVNDARSIFDYLI-FK-----DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTM 380 (760)
Q Consensus 307 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 380 (760)
.+.+......+++.+....+++.+..++.+.. .| -..+..++|+.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34445555666777777777788887777662 11 2346679999999999999999999999999999999999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 041183 381 ASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKC 425 (760)
Q Consensus 381 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (760)
+.+|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999888777777777666666665
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.0034 Score=51.39 Aligned_cols=88 Identities=19% Similarity=0.064 Sum_probs=55.3
Q ss_pred HHHHhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHHHHH
Q 041183 621 IVDLLGRVGLLEGAKMTIDQMP---IPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD---NESTYVLLSNLYA 692 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 692 (760)
+..++-..|+.++|+.+|++.. ... ....+..+..++...|++++|+.++++...-.|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445555666666666666541 111 1335556666777777777777777777776666 5556666667777
Q ss_pred hcCChhHHHHHHHHHH
Q 041183 693 SAGMWNDVGKLRKEMK 708 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~ 708 (760)
..|++++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777665543
No 191
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.0061 Score=54.48 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPD--EITYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555555555544211111 12444444455555555555555555544
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.21 E-value=0.13 Score=49.92 Aligned_cols=211 Identities=15% Similarity=0.113 Sum_probs=110.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--HHHhcCCHHHHHHHHHhcC-CCChH--hHHHHHHHHHHcCCHHHHH
Q 041183 490 AMTDLEQGKAIHCLALKARYDQDIFVESAVID--MYCKCGTIEDAKRAFRKIC-RDSLA--GWNAMMMGYAQHGCYHEVS 564 (760)
Q Consensus 490 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~a~ 564 (760)
..||-..|.+.-.+..+. +..|......++. +-.-.|++++|.+-|+.|. .|... -...|.-.-.+.|..+.|.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 445666666555444321 1223333333322 2334677788888777774 23222 2223333334567777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhH--HHHHHHHhh---hcCChHHHHHHH
Q 041183 565 NLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEH--YACIVDLLG---RVGLLEGAKMTI 638 (760)
Q Consensus 565 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~ 638 (760)
.+-++... .-|. .......+...+..|+|+.|+++++.-+...-+.++..- -..|+.+-. -..+...|...-
T Consensus 175 ~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 175 HYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77776665 3453 366677777788888888888888777664445555321 111221110 011334444433
Q ss_pred HhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 639 DQM-PIPPDA-HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 639 ~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.+. +..|+. ..-..-..++.+.|+..++-.+++.+.+.+| +|.+.. .|.+..--+.++.-+++..
T Consensus 253 ~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~----lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 253 LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIAL----LYVRARSGDTALDRLKRAK 319 (531)
T ss_pred HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHH----HHHHhcCCCcHHHHHHHHH
Confidence 333 344442 2333445566777777777777777777777 444333 3333333344444444444
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.27 Score=48.23 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCcHHHHHHHHHHhhhhc-CCCCC--hhH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-----DEI-TYLAVLTSCCHAGLVREARTYLSCMSDLH-GLIPQ--LEH 617 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--~~~ 617 (760)
+..+...+.+.|++++|.++|++........ +.. .|...+-.+...||...|.+.++...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 4456667778888888888888877643221 111 22223335556788888888888876511 22222 244
Q ss_pred HHHHHHHhh--hcCChHHHHHHHHhCC
Q 041183 618 YACIVDLLG--RVGLLEGAKMTIDQMP 642 (760)
Q Consensus 618 ~~~l~~~~~--~~g~~~~A~~~~~~~~ 642 (760)
...|+.++- ....+++|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 455666653 2335666666666664
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0058 Score=61.88 Aligned_cols=117 Identities=10% Similarity=0.076 Sum_probs=78.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 041183 410 LDDSMISCLITTYGKCNALNESKRVLSEIDKK------NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSI 483 (760)
Q Consensus 410 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 483 (760)
.+......+++.+....+++.+..++-+.+.. .+.+..+++..|...|..++++.+++.=...|+=||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444455555555555555555555555432 234556777777777777777777777777788888888888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhc
Q 041183 484 VLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKC 526 (760)
Q Consensus 484 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 526 (760)
||..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888887777766656666666555555544
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.16 E-value=0.0029 Score=61.17 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhh---hhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCCH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMS---DLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQM-------P-IPPDA 647 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 647 (760)
..|..|-..|.-.|+++.|+...+.-. +.+|-.. ....+..|..+++-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 446666666777899999987654322 2245444 3567888999999999999999999865 1 23345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLEL----Q--PDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
..-.+|.++|....+++.|+.+..+=+.+ + -....+++.|+.+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56678899999999999999888776653 2 23677999999999999999999988776543
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.27 Score=51.49 Aligned_cols=30 Identities=10% Similarity=-0.178 Sum_probs=19.5
Q ss_pred CCCchhHhHHHHhhhcCCChHHHHHHHhcC
Q 041183 308 MEVVSIGNALISMYGKCGQVNDARSIFDYL 337 (760)
Q Consensus 308 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 337 (760)
.|.+..|..|.......-.++-|+..|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 466677777776666666666666666544
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.14 E-value=0.0086 Score=46.99 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhhhhcCCCCChhHH
Q 041183 548 NAMMMGYAQHGCYHEVSNLFNKMSKFGV-KPDEITYLAVLTSCCHAG--------LVREARTYLSCMSDLHGLIPQLEHY 618 (760)
Q Consensus 548 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~ 618 (760)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. ++-..+.+|+.|.. .+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3455666667999999999999999999 899999999998766532 34567788999988 7899999999
Q ss_pred HHHHHHhhh
Q 041183 619 ACIVDLLGR 627 (760)
Q Consensus 619 ~~l~~~~~~ 627 (760)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887754
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.079 Score=54.75 Aligned_cols=259 Identities=14% Similarity=0.097 Sum_probs=124.6
Q ss_pred CCCCchhhhHHHHHHHhcCChhhHHHHhhhcC-----------CCCceeHHHHHHHHHhcCCh--hHHHHHHHHHHHCCC
Q 041183 109 FSSRVYLVSGFIENYAKSGEIVSAEMCFRDCL-----------DLDNVAYTAMVCGYVWNGEF--DKSKEVFVEMRSLGL 175 (760)
Q Consensus 109 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~ 175 (760)
+.+....+.+-+-.|...|.+++|..+----. ..+...+++-=.+|.+-++. -+...-+++|++.|-
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34455555555666777888877765431111 12333455555666665543 355556677777776
Q ss_pred CCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhc
Q 041183 176 ELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAAC 255 (760)
Q Consensus 176 ~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 255 (760)
.|+.... ...++-.|.+.+|-++|.+--.
T Consensus 632 ~P~~iLl-------------------------------------A~~~Ay~gKF~EAAklFk~~G~-------------- 660 (1081)
T KOG1538|consen 632 TPNDLLL-------------------------------------ADVFAYQGKFHEAAKLFKRSGH-------------- 660 (1081)
T ss_pred CchHHHH-------------------------------------HHHHHhhhhHHHHHHHHHHcCc--------------
Confidence 6765433 2345556777777777766432
Q ss_pred ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHh
Q 041183 256 DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFD 335 (760)
Q Consensus 256 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 335 (760)
...|+++|.+|+-. -...-+...|+.++-+.+.+.-.+. ..+..--.+...++..+|+.++|..+.
T Consensus 661 -enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 661 -ENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred -hhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 22455555554311 0111122222322222222211110 000000022233344455555554432
Q ss_pred cCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHH
Q 041183 336 YLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMI 415 (760)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 415 (760)
..+|-.+-+.++-+++-. .+..+...+...+.+...+..|.++|..|-+.
T Consensus 727 -----------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 222223333333333221 13334444444455556666677777665432
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHH
Q 041183 416 SCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEA 462 (760)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 462 (760)
.++++.....+++++|..+-++.++--+..|.....-++...++++|
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHH
Confidence 35666777778888888888777764333333333333444444433
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.08 E-value=0.0069 Score=59.05 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR-VGLLEGAKMTIDQM--PIPPDAHIWQSLLSA 656 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 656 (760)
..|..++..+.+.+..+.|+.+|.++.+ ....+..+|-..+..-.. .++.+.|.++|+.+ ..+.+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4577788888899999999999999986 233344556555555344 56667799999988 266788899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPDNE---STYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+...++.+.|..+|++++..-|.+. ..|...+..-.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999766444 58889999999999999999999888764
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.07 E-value=0.00096 Score=43.52 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHH
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSN 689 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 689 (760)
.+|..+..++...|++++|++.++++++..|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999988874
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.07 E-value=0.078 Score=52.71 Aligned_cols=160 Identities=13% Similarity=0.039 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChHhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKICRD-------SLAGWNAMMMGYAQ---HGCYHEVSNLFNKMSKFGVKPDEITYLAVLT 587 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 587 (760)
.++-+|....+++...++.+.+... ....-...+-++-+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666666432 11122233444555 6777888888877555555666677766665
Q ss_pred HHh----c-----cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh----HHHHHHH---Hh-C------CCC
Q 041183 588 SCC----H-----AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL----EGAKMTI---DQ-M------PIP 644 (760)
Q Consensus 588 ~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~-~------~~~ 644 (760)
.|- . ....+.|...|.+..+ +.|+...=-.++..+.-.|.. .+..++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 432 1 2247778888887765 445543333333333333321 1222222 11 1 133
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 645 PDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 645 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
.+-..+.+++.++.-.||+++|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 455566788999999999999999999999998753
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.7 Score=49.27 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 041183 517 SAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVR 596 (760)
Q Consensus 517 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 596 (760)
+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++..++-+.+. ++..|.-+..+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3334444555666666666666666666555555556666666655444332221 1344455555666666666
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHH
Q 041183 597 EARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMT 637 (760)
Q Consensus 597 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (760)
+|.+++-+... . .-.+.+|.+.|++.+|.++
T Consensus 762 EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 762 EAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHH
Confidence 66655544422 1 1344555555555555443
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.38 Score=50.50 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChhhHHHHhhhcCCC--C---ceeHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 118 GFIENYAKSGEIVSAEMCFRDCLDL--D---NVAYTAMVCGYVWNGEFDKSKEVFVEM 170 (760)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m 170 (760)
..|..+.+.|+|-...++++.-... | ...|+.+...++....|++|.+.+..-
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666778887777777654331 1 237888888888888888888887753
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.94 E-value=0.13 Score=44.55 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=63.4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChHhHHH
Q 041183 475 EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRD-----SLAGWNA 549 (760)
Q Consensus 475 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 549 (760)
.|+...-..|..+....|+..+|...|.+....-+..|....-.+.++....+++..|...++++-+- .+.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555566666666666655555444555555555555555566666666555554211 1223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREAR 599 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 599 (760)
+...+...|++.+|..-|+.... .-|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 44555555666666666665555 3444433333333344555444443
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.90 E-value=0.0033 Score=46.79 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=51.3
Q ss_pred HHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 623 DLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
..|.+.+++++|.++++.+- .+.++..|......+...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46777888888888888772 345666778888888999999999999999999999776655544
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.89 E-value=0.0022 Score=61.92 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=73.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCC
Q 041183 615 LEHYACIVDLLGRVGLLEGAKMTIDQM-------P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ------PDN 680 (760)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~ 680 (760)
-..|..|...|.-.|+++.|+...+.- . .......+..+.++++-.|+++.|.+.|+..+.+. -..
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 356778888888889999998776532 1 22334577888999999999999999999887642 225
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 681 ESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
+...+.|++.|.-..++++|+.++.+=
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999998873
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.014 Score=57.06 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=83.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 041183 616 EHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYAS 693 (760)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 693 (760)
.++..|.-++.+.+++.+|++...+.- .++|+....--..++...|+++.|...|++++++.|+|..+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 457788899999999999999998772 577888888889999999999999999999999999999999999988888
Q ss_pred cCChhHH-HHHHHHHHhC
Q 041183 694 AGMWNDV-GKLRKEMKEK 710 (760)
Q Consensus 694 ~g~~~~A-~~~~~~~~~~ 710 (760)
..++++. .++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 8777665 7889988763
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.86 E-value=0.31 Score=46.31 Aligned_cols=61 Identities=13% Similarity=-0.070 Sum_probs=35.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 041183 448 ALASVLVYASCHAEALELYRTIWGSCREVNGS--TFSIVLKACAAMTDLEQGKAIHCLALKAR 508 (760)
Q Consensus 448 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 508 (760)
.....+...|++++|.+.|+++...-+.+... ..-.+..++.+.++++.|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34445566677777777777776643222111 11234456667777777777777777654
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.85 E-value=0.0069 Score=53.99 Aligned_cols=97 Identities=13% Similarity=0.264 Sum_probs=76.7
Q ss_pred HHHHhcC--CCCCeeeHHHHHHHHHhc-----CCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc-------------
Q 041183 331 RSIFDYL--IFKDSVSWNSMIAGYSEN-----GFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNS------------- 390 (760)
Q Consensus 331 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 390 (760)
...|+.. ..++..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445544 455777777777777644 66677778888899999999999999999877542
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 041183 391 ---KSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNA 427 (760)
Q Consensus 391 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (760)
.+-+.|.+++++|...|+.||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2467789999999999999999999999999987764
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.83 E-value=0.14 Score=50.15 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhc
Q 041183 519 VIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQH-GCYHEVSNLFNKMSKF----GVKPD--EITYLAVLTSCCH 591 (760)
Q Consensus 519 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~ 591 (760)
.+..|...|++..|-..+ ..+...|... |++++|++.|++..+. | .+. ..++..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 345566677776666654 3455666666 7888888888776542 2 221 2445666677888
Q ss_pred cCcHHHHHHHHHHhhhhcCCC-----CCh-hHHHHHHHHhhhcCChHHHHHHHHhCC-CCC------CHHHHHHHHHHHH
Q 041183 592 AGLVREARTYLSCMSDLHGLI-----PQL-EHYACIVDLLGRVGLLEGAKMTIDQMP-IPP------DAHIWQSLLSACT 658 (760)
Q Consensus 592 ~g~~~~A~~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p------~~~~~~~l~~~~~ 658 (760)
.|++++|.++|+++... ... ++. ..+-..+-++...|++..|.+.+++.. ..| .......|+.++-
T Consensus 168 l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88888888888887762 221 122 223333445566788888888887652 212 2334555666653
Q ss_pred h--cCChhHHHHHHHHHhccCC
Q 041183 659 I--YGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 659 ~--~~~~~~A~~~~~~~~~~~p 678 (760)
. ...++.|+.-|+.+.+++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 3 2344555555555555544
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0024 Score=48.33 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLEL----QPD---NESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888899999999999988874 222 356888999999999999999999988654
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.016 Score=55.41 Aligned_cols=101 Identities=11% Similarity=-0.007 Sum_probs=59.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHH
Q 041183 582 YLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP-----IPPDAHIWQSLLS 655 (760)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~ 655 (760)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+.+- .+..+..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655211111 02345556666666666666666666551 1223445556666
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCch
Q 041183 656 ACTIYGNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 656 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
.+...|+.+.|...|+++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777888999999999998888886543
No 213
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.071 Score=52.21 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=97.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChH-hHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----------
Q 041183 521 DMYCKCGTIEDAKRAFRKICRDSLA-GWNAMMM--GYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVL----------- 586 (760)
Q Consensus 521 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~----------- 586 (760)
.++...|++++|...-..+.+.|.. .+...+. ++.-.++.+.+...|++... +.|+...-...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 4455566666666655544333322 2222222 23345677777777777766 456543322211
Q ss_pred --HHHhccCcHHHHHHHHHHhhhh--cCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHH---HHHHHHHHHHh
Q 041183 587 --TSCCHAGLVREARTYLSCMSDL--HGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAH---IWQSLLSACTI 659 (760)
Q Consensus 587 --~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~l~~~~~~ 659 (760)
+-..+.|.+..|.+.|.+.... ....|+...|.....+..+.|+..+|+.-.+... .-|+. .+..-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHH
Confidence 1235788999999999998751 2344556778888888899999999998888774 23333 22333344566
Q ss_pred cCChhHHHHHHHHHhccCC
Q 041183 660 YGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 660 ~~~~~~A~~~~~~~~~~~p 678 (760)
.+++++|.+.++++.++.-
T Consensus 334 le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7899999999999998765
No 214
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.74 E-value=0.049 Score=44.64 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=54.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHHHH
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCREVNG--STFSIVLKACAAMTDLEQGKAIHCLALKARYD--QDIFVESAVIDMYC 524 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 524 (760)
+..++-..|+.++|+.+|++....|...+. ..+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666777888888888887777655442 34555666677777777777777777654311 01222223334555
Q ss_pred hcCCHHHHHHHHHhc
Q 041183 525 KCGTIEDAKRAFRKI 539 (760)
Q Consensus 525 ~~~~~~~A~~~~~~~ 539 (760)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 666666666665433
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.71 Score=45.69 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=63.5
Q ss_pred HhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCH
Q 041183 314 GNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSL 393 (760)
Q Consensus 314 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 393 (760)
.+..|.-+...|+...|.++-....-|+..-|-..+.+++..++|++-..+... .-++.-|..++.+|...|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455555666777777777766666777777777777777777665554322 11345666667777666766
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 041183 394 KQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRV 434 (760)
Q Consensus 394 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 434 (760)
.+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 6666665541 113455566666666666554
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.66 E-value=0.04 Score=47.79 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=72.2
Q ss_pred HhccCcHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 041183 589 CCHAGLVREARTYLSCMSDLHG--LIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLG 666 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 666 (760)
....|+.+.+...++.+..-.. +-|+... ..........+... -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456777778777777766221 1112111 11222222333322 134556677788899999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 667 LLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 667 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
+..+++++..+|-+...|..++.+|...|+..+|+++|+++.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 217
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.58 E-value=0.027 Score=50.30 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=68.5
Q ss_pred CCCChHhHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------CcHHHH
Q 041183 540 CRDSLAGWNAMMMGYAQ-----HGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHA----------------GLVREA 598 (760)
Q Consensus 540 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------g~~~~A 598 (760)
...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 34556666666666654 356666777788888888888889999888876541 234678
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC
Q 041183 599 RTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL 630 (760)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 630 (760)
++++++|.. +|+.||.+++..|+..+++.+.
T Consensus 123 i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 899999988 8999999999999999977765
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.55 E-value=0.05 Score=45.47 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=63.3
Q ss_pred HHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch---hHHHHHHHHHh
Q 041183 622 VDLLGRVGLLEGAKMTIDQMP-----IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES---TYVLLSNLYAS 693 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 693 (760)
.....+.|++++|.+.|+.+. .+-....-..|+.++.+.+++++|...+++.+++.|.++. ++...|.++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 344456677777777777662 1223455667888889999999999999999998887543 55566666666
Q ss_pred cCC---------------hhHHHHHHHHHHhC
Q 041183 694 AGM---------------WNDVGKLRKEMKEK 710 (760)
Q Consensus 694 ~g~---------------~~~A~~~~~~~~~~ 710 (760)
+.. ..+|+..|+++.++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 655 67888888888766
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.1 Score=47.78 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc----CCCCChhHHHHHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLH----GLIPQLEHYACIV 622 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~ 622 (760)
-+.++..+.-.|.+.-.+..+++.++..-.-+......|.+.--+.||.+.|...|+...+.. +..-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345555566666777777777777774333355666666666667777777777777665421 1222222233333
Q ss_pred HHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 623 DLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
..|.-++++.+|...+.++. .+.++...|.-.-...-.|+...|++..+.+.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44555566666666666663 2333444444433444456677777777777776663
No 220
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.085 Score=49.89 Aligned_cols=103 Identities=17% Similarity=0.065 Sum_probs=79.9
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-C-CCCCHHH
Q 041183 576 KP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG---LLEGAKMTIDQM-P-IPPDAHI 649 (760)
Q Consensus 576 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~-~~p~~~~ 649 (760)
.| |...|..|..+|...|+++.|...|....+ --.+++..+..+..++.... ...++..+|+++ . .+.|+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45 668888888999999999999999998887 23445677777777765433 467888888888 2 4556667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
..-|...+...|++.+|...++.++++.|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 7777778899999999999999999988744
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.43 E-value=0.2 Score=46.29 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=84.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHh--
Q 041183 521 DMYCKCGTIEDAKRAFRKICR--D----SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSCC-- 590 (760)
Q Consensus 521 ~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~-- 590 (760)
..+...|++.+|...|+.+.. | .....-.++.++.+.|++++|...++++.+ ..|+. ..+...+.+.+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHH
Confidence 344555666666666655531 1 112344556667777777777777777666 23432 11222222211
Q ss_pred -----------ccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041183 591 -----------HAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTI 659 (760)
Q Consensus 591 -----------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 659 (760)
..+....|...|+.+.+ -|=......+|...+..+...- ..--..+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 11222344444444444 3333333444444444332000 0011224566889
Q ss_pred cCChhHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCChhHHHH
Q 041183 660 YGNIDLGLLAGSKLLELQPDNE---STYVLLSNLYASAGMWNDVGK 702 (760)
Q Consensus 660 ~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 702 (760)
.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999888743 456788889999999885543
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.34 E-value=0.065 Score=54.10 Aligned_cols=145 Identities=13% Similarity=0.071 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh
Q 041183 559 CYHEVSNLFNKMSK-FGVKPDE-ITYLAVLTSCCH---------AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR 627 (760)
Q Consensus 559 ~~~~a~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 627 (760)
..+.|+.+|.+... +.+.|+. ..|..+..++.. ..+..+|.+.-+...+ --+-|+.....+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 44667778888772 1256654 555555544322 1233455555555555 223355666666666666
Q ss_pred cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH-HHhcCChhHHHHHH
Q 041183 628 VGLLEGAKMTIDQMP-IPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL-YASAGMWNDVGKLR 704 (760)
Q Consensus 628 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~ 704 (760)
.|+++.|...|++.. ..| ...+|......+.-.|+.++|.+.++++++++|....+-..-.++ .+-....++|++++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 677777777777763 333 355666666666777777777777777777777544443333333 22334455566554
Q ss_pred H
Q 041183 705 K 705 (760)
Q Consensus 705 ~ 705 (760)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.31 E-value=0.57 Score=43.24 Aligned_cols=177 Identities=12% Similarity=0.024 Sum_probs=77.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhc
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCREV--NGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKC 526 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 526 (760)
....+...|++.+|...|+.+...-+.. .....-.+..++.+.|+++.|...++..++.-+......+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3445566777777777777776643211 12244456666777777777777777776644222222222222222211
Q ss_pred CCHHHHHHHHHhcCCCCh-------HhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 041183 527 GTIEDAKRAFRKICRDSL-------AGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREAR 599 (760)
Q Consensus 527 ~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 599 (760)
....... ....|. ..+..++.-|-.+....+|...+..+.+. .- ..-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHH
Confidence 1111110 001111 12333444444444444444444333321 00 00111334566677777777
Q ss_pred HHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHH
Q 041183 600 TYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 600 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 634 (760)
.-++.+.+...-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777663222221 23445555666666655533
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.88 Score=42.00 Aligned_cols=131 Identities=8% Similarity=-0.073 Sum_probs=85.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHH
Q 041183 583 LAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--------IPPDAHIWQSLL 654 (760)
Q Consensus 583 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~ 654 (760)
+.++..+.-.|.+.-....+.+..+ ..-+.++.....|+..-...|+.+.|..+|++.+ ...+........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445555556666667777777766 3334466667777777777788777777777441 222222223333
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041183 655 SACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCK 714 (760)
Q Consensus 655 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 714 (760)
..+.-.+++..|...+.++...+|.++.+.+.-+-++.-.|+..+|++.++.|...-..+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 344556677777777777777777777777777777777778888888777777654433
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.09 E-value=0.0077 Score=45.48 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQM-------P-IPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
+++.+..+|...|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444455555555554444433 1 1122 445677777777888888888888777653
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=2.6 Score=45.18 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041183 579 EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACT 658 (760)
Q Consensus 579 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 658 (760)
..+.+--+.-+...|...+|.++-++.+- ||...|..=+.+++..+++++-+++-+..+ .+.-|.-+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 34455556667778888888888777654 888888888889999999998888777765 2566777888999
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHH
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
+.|+.++|..+.-+.-.+. ....+|.+.|++.+|.+.--
T Consensus 756 ~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 9999999888766543221 57778889999998887643
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.03 E-value=0.044 Score=44.11 Aligned_cols=88 Identities=22% Similarity=0.153 Sum_probs=66.5
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-CCC---chhHHHHHHHHHhcCCh
Q 041183 624 LLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ-PDN---ESTYVLLSNLYASAGMW 697 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 697 (760)
++...|+.+.|++.|.+.- .+..+..||.-..++...|+.++|+.-+++++++. |.. ..+|...+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4556777777777776652 34567788888888888899999999999998875 332 33567778888888999
Q ss_pred hHHHHHHHHHHhCC
Q 041183 698 NDVGKLRKEMKEKF 711 (760)
Q Consensus 698 ~~A~~~~~~~~~~~ 711 (760)
+.|+.-|+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99998888876654
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.01 E-value=1.5 Score=41.65 Aligned_cols=194 Identities=21% Similarity=0.172 Sum_probs=121.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 041183 513 IFVESAVIDMYCKCGTIEDAKRAFRKIC-----RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLT 587 (760)
Q Consensus 513 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 587 (760)
...+......+...+++..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555556666666677776666665543 22333455556666666677777777777766332221 11222222
Q ss_pred -HHhccCcHHHHHHHHHHhhhhcCCCC----ChhHHHHHHHHhhhcCChHHHHHHHHhCC-C-CC-CHHHHHHHHHHHHh
Q 041183 588 -SCCHAGLVREARTYLSCMSDLHGLIP----QLEHYACIVDLLGRVGLLEGAKMTIDQMP-I-PP-DAHIWQSLLSACTI 659 (760)
Q Consensus 588 -~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p-~~~~~~~l~~~~~~ 659 (760)
.+...|+++.|...+..... ..| ....+......+...++.++|...+.... . +. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777777777777777744 222 23334444444566777777777777662 2 23 35667777777777
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 660 YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 660 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.++++.|...+..+....|.....+..++..+...|.++++...+.+..+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888888888888887765666677777777667788888777776654
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=3.4 Score=45.03 Aligned_cols=50 Identities=4% Similarity=0.141 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLF 567 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 567 (760)
-++..+....+.+.+..+.+...+.++..|..++..+++.+..+.-.+..
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v 759 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIV 759 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHH
Confidence 46667778888888888888888778888999999888887555444433
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=95.90 E-value=0.38 Score=48.83 Aligned_cols=142 Identities=11% Similarity=0.022 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcC---CCC---hHhHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 041183 529 IEDAKRAFRKIC---RDS---LAGWNAMMMGYAQH---------GCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHA 592 (760)
Q Consensus 529 ~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~ 592 (760)
.+.|..+|.+.. +.| ...|..+..++... ....+|.++.++..+ +.| |......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 456777777665 333 33455444443322 234456666666666 344 556666666666667
Q ss_pred CcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChhHHH
Q 041183 593 GLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAH---IWQSLLSACTIYGNIDLGL 667 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~A~ 667 (760)
++++.|...|++... +.|| ...|......+.-.|+.++|.+.+++. ...|... .....+..|+. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 778888888888766 5565 355555555566678888888888773 4455432 22222323333 3455666
Q ss_pred HHHHHHhcc
Q 041183 668 LAGSKLLEL 676 (760)
Q Consensus 668 ~~~~~~~~~ 676 (760)
.+|-+-.+.
T Consensus 428 ~~~~~~~~~ 436 (458)
T PRK11906 428 KLYYKETES 436 (458)
T ss_pred HHHhhcccc
Confidence 666554443
No 231
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.87 E-value=0.051 Score=47.45 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|..-..++.+.+.++.|+.--.++++++|....++...+.+|.+...+++|+.-++++.+.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3444455667777777777777777787777777777777788887788888777777655
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.76 E-value=0.026 Score=36.65 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 681 ESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
|.++..++.+|.+.|++++|.+.+++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999977
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.45 Score=44.96 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=80.0
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChh
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQS---LLSACTIYGNID 664 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 664 (760)
.....|++..|...|+.... -.+-+......|+.+|...|+.+.|..++..++..-....+.. -+..+....+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 45567888888888888876 2333456667788888888888888888888863333333333 223333333333
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 665 LGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+.. .+++-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 234455568888888888899999999999888877766654
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.69 E-value=1.4 Score=44.17 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCC-------CcccHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChhHHH
Q 041183 413 SMISCLITTYGKCNALNESKRVLSEIDKK-------NAVHINALASVLVY---ASCHAEALELYRTIWGSCREVNGSTFS 482 (760)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~~~~~~~~ 482 (760)
.+...++-.|....+++...++.+.+... .+..-.....++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33445555677777777777777777653 12222344456666 777888888887765555566777776
Q ss_pred HHHHHH
Q 041183 483 IVLKAC 488 (760)
Q Consensus 483 ~ll~~~ 488 (760)
.+...|
T Consensus 222 L~GRIy 227 (374)
T PF13281_consen 222 LLGRIY 227 (374)
T ss_pred HHHHHH
Confidence 665443
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.64 E-value=4.4 Score=46.12 Aligned_cols=144 Identities=14% Similarity=0.042 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 041183 515 VESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGL 594 (760)
Q Consensus 515 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 594 (760)
.|.-.++.--+.|.+.+|..++..-.+.-...|.+....+.....+++|.-.|+..-+ ..-.+.+|..+|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3444455555666777777665433333333555566666677788888777765433 1235677888899
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 041183 595 VREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLL 674 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 674 (760)
|.+|+.+..++.. +-.--..+-..|+.-+...+++-+|-++..+....|.. .+..+++...+++|........
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 9999888877654 11111223366788888889988888888877534432 2234455556666666655554
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.088 Score=49.12 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=44.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCC---CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLELQPD---NESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
|..++...|++++|...|..+.+-.|+ -+..+..|+.+..+.|+.++|..+|+++.++..
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 566777777777777777777775544 456777888888888888888888888777643
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.52 E-value=1.1 Score=36.61 Aligned_cols=140 Identities=15% Similarity=0.061 Sum_probs=86.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHH
Q 041183 555 AQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGA 634 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 634 (760)
.-.|..++..++..+...+ .+..-++.++--....-+-+-..++++.+-+-+.+.|- .....++.+|++.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3467888888888887763 24455666665555555666667777777552222211 122344555554443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041183 635 KMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLC 713 (760)
Q Consensus 635 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 713 (760)
+....+..+..+...|+-+.-.+++.....-+..+|..+..++.+|.+.|+..+|-+++++.=++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445666778888899998888888888654448999999999999999999999999998888864
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=1.6 Score=41.35 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=107.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC
Q 041183 552 MGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL 630 (760)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 630 (760)
......|++.+|...|+..... .| +......+..+|...|+.+.|..++..+-.+ --.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 3456788999999999988874 44 3456667788999999999999999887551 111112223344556666666
Q ss_pred hHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 631 LEGAKMTIDQMPIPP-DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ--PDNESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 631 ~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
..+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++.+ -++..+-..+..++.-.|.-+.+...+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 666666666654344 77778888889999999999999998888853 45778888888888888866655444443
No 239
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.42 E-value=0.21 Score=41.46 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 041183 513 IFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHA 592 (760)
Q Consensus 513 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 592 (760)
..++..++.++++.|+++....+++..-..++.. -...+. --......|+..++.+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455566666666666666666655442111110 000000 112233567777788888888888
Q ss_pred CcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 593 GLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
|++..|.++++...+.++++.+..+|..|+.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8888888888888777776666777776665
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=95.37 E-value=0.37 Score=41.41 Aligned_cols=92 Identities=8% Similarity=-0.119 Sum_probs=70.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGN 662 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~ 662 (760)
...-+...|++++|..+|+-+.- --..+..-+..|..++-..+++++|+..|.... ...|+..+......+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33446678999999999999876 233356677888889999999999999998762 23444445567778889999
Q ss_pred hhHHHHHHHHHhccCCC
Q 041183 663 IDLGLLAGSKLLELQPD 679 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~ 679 (760)
.+.|...|+.+++ .|.
T Consensus 121 ~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHHh-Ccc
Confidence 9999999999988 453
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=2.3 Score=39.03 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhc----cCCCCchhH
Q 041183 617 HYACIVDLLGRVGLLEGAKMTIDQMP-------IPPDA-HIWQSLLSACTIYGNIDLGLLAGSKLLE----LQPDNESTY 684 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~ 684 (760)
.+..+..+|.+..++++|-..+.+-. ..|+. ..+.+.|-.+.-..|+..|+..++...+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445556667777777665554431 22332 2355555566667788888888887655 346677777
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 041183 685 VLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~ 705 (760)
..|+.+| ..|+.+++.+++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHHc
Confidence 7777665 4577777665543
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.31 E-value=0.098 Score=52.77 Aligned_cols=63 Identities=10% Similarity=-0.044 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDA----HIWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
+...+..+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|++.+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566677777777777777777777764 345553 34777777777888888888888888776
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.26 E-value=0.14 Score=44.33 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCChhH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSD----LHGLIPQLEH 617 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 617 (760)
...++..+...|++++|..+++++.. ..| |...+..++.++...|+...|.++|+.+.+ ..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44566667778888888888888887 556 567788888888888888888888877654 3467776654
No 244
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.22 E-value=3.9 Score=41.14 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=97.2
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 041183 544 LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG-VKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIV 622 (760)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 622 (760)
...|...+..-.+..-.+.|..+|-+..+.| +.++...++.++..++ .|+...|.++|+.-.. .++-+.......+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 3456667777777777788888888888887 5567778888877554 5777888888887665 2333333345566
Q ss_pred HHhhhcCChHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 623 DLLGRVGLLEGAKMTIDQM--PIPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~~--~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
.-+.+.++-+.|..+|+.. .+.. -..+|..++.--...|+...+..+-+++.++.|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7777888888888888854 1222 25678888888888899999999889988888853
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.22 E-value=2.8 Score=39.57 Aligned_cols=198 Identities=20% Similarity=0.105 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-HhHHHHHH-
Q 041183 478 GSTFSIVLKACAAMTDLEQGKAIHCLALKA-RYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICR--DSL-AGWNAMMM- 552 (760)
Q Consensus 478 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~- 552 (760)
...+......+...++...+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344555555566666666666666655542 2234455556666666677777777777776643 221 22333333
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhh
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKP----DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGR 627 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 627 (760)
.+...|+++.+...+.+... ..| ....+......+...++.+.+...+..... ..+. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHH
Confidence 67888999999999998855 344 233444444456778899999999999887 2333 46778888888999
Q ss_pred cCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 628 VGLLEGAKMTIDQMP-IPPD-AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 628 ~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
.+++++|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999998873 3444 455666666666777899999999999999985
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.21 E-value=0.032 Score=33.77 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777777778888888888888877774
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.18 E-value=0.045 Score=33.03 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
.|..+...+...|++++|++.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556666667777777777777777777664
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.06 E-value=1.1 Score=47.43 Aligned_cols=115 Identities=15% Similarity=0.035 Sum_probs=66.1
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCChhHH-HHHHHHhhhcCChHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChh
Q 041183 592 AGLVREARTYLSCMSDLHGLIPQLEHY-ACIVDLLGRVGLLEGAKMTIDQMP------IPPDAHIWQSLLSACTIYGNID 664 (760)
Q Consensus 592 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~ 664 (760)
..+.+.|.++++.+.+ .-|+...| -.-...+...|++++|++.|+++- ..-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 3455666666666665 23443333 223344456666777776666542 1112334445566667777888
Q ss_pred HHHHHHHHHhccCCCCchhHH-HHHHHHHhcCCh-------hHHHHHHHHHHh
Q 041183 665 LGLLAGSKLLELQPDNESTYV-LLSNLYASAGMW-------NDVGKLRKEMKE 709 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 709 (760)
+|...+.++.+...-+...|. ..+-++...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888877776543333333 444556666777 777777777654
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.59 Score=44.66 Aligned_cols=147 Identities=11% Similarity=-0.010 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHhhhcCChH
Q 041183 557 HGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL----EHYACIVDLLGRVGLLE 632 (760)
Q Consensus 557 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 632 (760)
+|+..+|...++++.+. .+.|...+...=.+|.-.|+.+.-...++++.. ...|+. .....+..++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444455555442 222334444444455555555555555555543 122222 22233333444555555
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 633 GAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD----NESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 633 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
+|++.-++.. .+.|.-.-.+....+...|+..++.++..+-...-.. -..-|.+.+-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 5555555442 2233333444444445555555555554443332110 122344444445555555555555554
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.96 E-value=3.5 Score=42.15 Aligned_cols=150 Identities=15% Similarity=0.035 Sum_probs=85.3
Q ss_pred CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCC--hh
Q 041183 542 DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP---DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQ--LE 616 (760)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 616 (760)
....+|..++..+.+.|+++.|...+.++...+..+ .......-+..+...|+..+|...++.... .....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~-~~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK-CRLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhccccc
Confidence 344578888889999999999999988888743211 223333345566778888899888887776 112211 11
Q ss_pred HHHHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCchhHHHHHH
Q 041183 617 HYACIVDLLGRVGLLEGAKMT-IDQMPIPPDAHIWQSLLSACTIY------GNIDLGLLAGSKLLELQPDNESTYVLLSN 689 (760)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 689 (760)
....+...+.. ..+..... ........-..++..+..-+... ++.+.+...|.++.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000112333333333333 78899999999999999998889988887
Q ss_pred HHHhc
Q 041183 690 LYASA 694 (760)
Q Consensus 690 ~~~~~ 694 (760)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77654
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.76 E-value=5.2 Score=40.27 Aligned_cols=141 Identities=12% Similarity=0.072 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHH-HHHHH
Q 041183 444 VHINALASVLVYASCHAEALELYRTIWGSC-REVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVE-SAVID 521 (760)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 521 (760)
..|..++....+....+.|..+|-+..+.| +.+++..+++++.-++ .|+...|..+|+--...- ||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 445556666666666777777777777777 5667777777776554 467777777777655533 333333 44556
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---C--hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041183 522 MYCKCGTIEDAKRAFRKICRD---S--LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSC 589 (760)
Q Consensus 522 ~~~~~~~~~~A~~~~~~~~~~---~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 589 (760)
-+...++-..|..+|+...+. + ...|..++.--..-|+...+..+=++|.+ +.|...+...+..-|
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 667788888888888855321 2 34688888877888888888888888877 567655555444444
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.74 E-value=0.09 Score=42.40 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 654 LSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 654 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.-++...|+.+.|++.|.+++.+-|.++++|+..+.++.-+|+.++|++-+++..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999876
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.71 E-value=0.19 Score=46.54 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHhcCC--CCCeeeHHHHHHHHHhc-----CCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCc------------
Q 041183 330 ARSIFDYLI--FKDSVSWNSMIAGYSEN-----GFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNS------------ 390 (760)
Q Consensus 330 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------ 390 (760)
.++.|..+. ++|..+|-..+..+... +..+=....++.|.+.|+.-|..+|+.|++.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566554 56777888888777643 55677778889999999999999999999877543
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 041183 391 ----KSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNAL 428 (760)
Q Consensus 391 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (760)
.+-+.+.+++++|..+|+.||..+-..|++++++.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 23456789999999999999999999999999887753
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.69 E-value=3.7 Score=38.29 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=44.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCC---chhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDN---ESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
.+.+-|.+.|.+..|..-++++++.-|+. ...+..+..+|.+.|..++|.+.-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34556788999999999999999876553 4566677788999999999988865554
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.57 E-value=4.2 Score=39.62 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
...-.++.+|...|.-++-...+.+
T Consensus 332 K~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 332 KLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 3455677778777776665554444
No 256
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.56 E-value=9.2 Score=42.26 Aligned_cols=68 Identities=7% Similarity=-0.030 Sum_probs=30.5
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHh
Q 041183 420 TTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACA 489 (760)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 489 (760)
..+.+.+++....+++..- ..+.........+....|+.++|....+.+-..|. ..+..+..++..+.
T Consensus 107 ~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~ 174 (644)
T PRK11619 107 NELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHH
Confidence 3344455555555522221 12333334445555556665555555555544332 22334444444444
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=8.8 Score=42.03 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=77.0
Q ss_pred CchhhhhHHHHhhccCChhHHHHhhhcCCCCCcchH---HHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHH
Q 041183 14 DPILSTTLISHFTKFADFRRAFRFLFDTQNRDIITY---NALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKA 90 (760)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 90 (760)
.+...-.-+..+.+...++-|+.+.+....+....- ..-..-+.+.|++++|...+-+-... +.| +.+++-
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 344555678888888889999888877654433322 22344577789999998877665432 222 344444
Q ss_pred hcCCCchh---HHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcC
Q 041183 91 CGSLQENE---IVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCL 140 (760)
Q Consensus 91 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 140 (760)
+-...... ..++.+.+.|+.-... -+.|+.+|.+.++.+.-.++.+...
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCC
Confidence 43333333 5566667777654433 3567888999999888888776665
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.42 Score=45.64 Aligned_cols=117 Identities=14% Similarity=0.032 Sum_probs=96.6
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHH----HHHHHHHhcCCh
Q 041183 590 CHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQ----SLLSACTIYGNI 663 (760)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~----~l~~~~~~~~~~ 663 (760)
.-.|.+.+|-..++++.+ ..|.|...+.-.=+++...|+.+.-...++++ + ..|+.+.|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 356778888888899887 57778888888888899999999988888888 3 466664443 334445778999
Q ss_pred hHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 664 DLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 664 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
++|++..+++++++|.|.-+.-.++.++...|+++++.+..++-.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 999999999999999999999999999999999999999877643
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.32 E-value=0.44 Score=39.57 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhh--------------hhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----
Q 041183 580 ITYLAVLTSCCHAGLVREARTYLSCMS--------------DLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM---- 641 (760)
Q Consensus 580 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 641 (760)
.++..++.++++.|+++....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555555555444332 11234455555555555555555555555555444
Q ss_pred CCCCCHHHHHHHHH
Q 041183 642 PIPPDAHIWQSLLS 655 (760)
Q Consensus 642 ~~~p~~~~~~~l~~ 655 (760)
+++-+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 23333445544443
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.23 E-value=0.87 Score=44.09 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=21.4
Q ss_pred HHhcCChhHHHHHHHHHHhCC--CCCChhHHHHHHHHHhccCCHHHHH
Q 041183 453 LVYASCHAEALELYRTIWGSC--REVNGSTFSIVLKACAAMTDLEQGK 498 (760)
Q Consensus 453 ~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 498 (760)
+....+.++|+..|.+-...- ..---.+|..+..+.+..|.++.+.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 344556666666665543321 0111124444555555555554443
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.21 E-value=0.52 Score=44.18 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=47.1
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC
Q 041183 591 HAGLVREARTYLSCMSDLHGLIPQ---LEHYACIVDLLGRVGLLEGAKMTIDQM----P-IPPDAHIWQSLLSACTIYGN 662 (760)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~p~~~~~~~l~~~~~~~~~ 662 (760)
+.|++..|.+.|....+ +.+-+ ...+-.|..++...|++++|..+|..+ + .+.-+..+.-|.......|+
T Consensus 153 ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34445555555555554 12111 233344555555555555555555444 1 22223455555566666666
Q ss_pred hhHHHHHHHHHhccCCCCchh
Q 041183 663 IDLGLLAGSKLLELQPDNEST 683 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~~~~~ 683 (760)
.++|-..|++..+--|+.+.+
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHH
Confidence 666666666666666654433
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.06 E-value=9.2 Score=40.28 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=122.9
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041183 512 DIFVESAVIDMYCKCGTIEDAKRAFRKICRD---SLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTS 588 (760)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 588 (760)
+..+|...+.--.+.|+.+.+.-+|+...-| -...|-..+.-....|+.+-|..++....+-. .|+......+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 3567777777778889999999888887533 33456666666666688888888877666542 3333333322222
Q ss_pred -HhccCcHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHhhhcCChHHHH---HHHHhC-CCCCCHHHHHH----HHHH-H
Q 041183 589 -CCHAGLVREARTYLSCMSDLHGLIPQL-EHYACIVDLLGRVGLLEGAK---MTIDQM-PIPPDAHIWQS----LLSA-C 657 (760)
Q Consensus 589 -~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~----l~~~-~ 657 (760)
+...|+++.|..+++.+.+ .. |+. ..-..-+....+.|..+.+. +++... +..-+..+... ..+- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~--e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIES--EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHh--hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4557899999999999988 34 553 33344455667888888887 555544 22223222222 2222 3
Q ss_pred HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 041183 658 TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM 696 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 696 (760)
.-.++.+.|..++.++.+..|++...|..+.......+-
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 446899999999999999999999999999988887763
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.04 E-value=1.3 Score=45.21 Aligned_cols=141 Identities=13% Similarity=0.017 Sum_probs=72.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhc--CCCCChhHHHHHHHHhhhcCChH
Q 041183 555 AQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLH--GLIPQLEHYACIVDLLGRVGLLE 632 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 632 (760)
-+..+...-++.-++..+ +.||..+...++ +-.......+|.+++++..+.. .+..+.. . ...|
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~-----~---~~~g--- 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQF-----L---QHHG--- 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhh-----h---hccc---
Confidence 345566666666677766 677764433332 2234555777887777776510 0000000 0 0000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 633 GAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD--NESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 633 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
...+.+..-...|-..+-..|...+.+.|+.++|++.++++++..|. +..+...|+.++...+.+.++..++.+-.+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 00011111011222233344555556667777777777777665543 445666677777777777777776666543
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.95 E-value=3.4 Score=35.28 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=16.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q 041183 484 VLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYC 524 (760)
Q Consensus 484 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 524 (760)
++..+...+.......+++.+...+ ..+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3333333344444444444444433 133334444444443
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.82 E-value=1.7 Score=45.32 Aligned_cols=159 Identities=16% Similarity=0.080 Sum_probs=98.6
Q ss_pred HHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 041183 349 IAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNAL 428 (760)
Q Consensus 349 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (760)
.+...-.++++.+.++...-.-..-.| ..-.+.++..+.+.|-.+.|+++..+- . .-.+...++|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 345566788888777664111000112 344677888888888888888875432 1 234556788999
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 041183 429 NESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKAR 508 (760)
Q Consensus 429 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 508 (760)
+.|.++.++.. ++..|..|.....+.|+++-|.+.|.+..+ +..|+-.+.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988877665 556888888888888888888888887643 5566666777788877777777766655
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHH
Q 041183 509 YDQDIFVESAVIDMYCKCGTIEDAKRAFR 537 (760)
Q Consensus 509 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 537 (760)
- ++....++...|+.++..+++.
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHH
Confidence 2 4555556666677777666653
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.72 E-value=7.4 Score=38.02 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=48.9
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C--hHhHHHHHHH
Q 041183 480 TFSIVLKACAAMTDLE---QGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRD-S--LAGWNAMMMG 553 (760)
Q Consensus 480 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~l~~~ 553 (760)
++..++.++...+..+ +|..+++.+.... +-.+.++..-++.+.+.++.+.+.+.+..|... + ...+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4555666666655544 3444444443322 223445545556666667777777777766421 1 1233333333
Q ss_pred H---HHcCCHHHHHHHHHHHHHCCCCCCH
Q 041183 554 Y---AQHGCYHEVSNLFNKMSKFGVKPDE 579 (760)
Q Consensus 554 ~---~~~~~~~~a~~~~~~m~~~g~~p~~ 579 (760)
+ .. .....|...+..+....+.|..
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3 22 2334555566555555455543
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.67 E-value=6.1 Score=36.92 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=38.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPD----EITYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
+...|.+.|.+..|..-+++|.+. -|+ ...+-.+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 455677888888888888888875 332 23455566777778887777776666654
No 268
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.63 E-value=0.25 Score=47.15 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=66.7
Q ss_pred HHHHhccCcHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 041183 586 LTSCCHAGLVREARTYLSCMSDLHGLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGN 662 (760)
Q Consensus 586 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~ 662 (760)
..-|.++|.+++|+..|..... +.| ++.++..-..+|.+..++..|..-...+- ...-...|.--+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3567888889999988888766 445 77778888888888888887776665542 12223455555556666778
Q ss_pred hhHHHHHHHHHhccCCCCc
Q 041183 663 IDLGLLAGSKLLELQPDNE 681 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p~~~ 681 (760)
..+|.+-++.++++.|++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8888888888888888643
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.59 E-value=1.8 Score=36.43 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=64.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhh
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKP----DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLG 626 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 626 (760)
.....+.|++++|.+.|+.+... -| ....-..|+.++.+.++++.|...+++..+-+...|++ -|.....+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence 34445667788888777777764 22 23455566777777888888887777777733333332 3444444443
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 041183 627 RVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
.-...+..+.-+- .... ..+....|...|++.++.-|++.-
T Consensus 94 ~~~~~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHhhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCChh
Confidence 3322221111111 1111 112345788888888888886543
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.42 E-value=4.5 Score=34.57 Aligned_cols=125 Identities=9% Similarity=0.038 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh
Q 041183 548 NAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR 627 (760)
Q Consensus 548 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 627 (760)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ .......++. . .+.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 344445555555666666666655544 234445555555555432 2223333321 1 122223334555555
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 628 VGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIY-GNIDLGLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 628 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
.+.++++.-++.+++. +...+..+... ++++.|.+...+ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 5555566555555541 11122222222 556666665554 224445555554443
No 271
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=4.9 Score=36.73 Aligned_cols=19 Identities=26% Similarity=0.114 Sum_probs=11.7
Q ss_pred CChhHHHHHHHHHhccCCC
Q 041183 661 GNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~p~ 679 (760)
.|.-.+...+++-.+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555566666666666664
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.38 E-value=0.16 Score=31.11 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 683 TYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998844
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.26 E-value=4 Score=33.52 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCC
Q 041183 548 NAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGL 611 (760)
Q Consensus 548 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 611 (760)
...+..+...|+-++..+++.++.+. -.|++.....+..||.+.|+..++.+++.++-+ .|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 34456667777777777777777653 356667777777788888888888777777776 444
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.24 E-value=1.1 Score=47.52 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh-----hHHHHHHHHhh----hcCChHHHHHHHHhCC-CCCCHHHHH
Q 041183 582 YLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL-----EHYACIVDLLG----RVGLLEGAKMTIDQMP-IPPDAHIWQ 651 (760)
Q Consensus 582 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~----~~g~~~~A~~~~~~~~-~~p~~~~~~ 651 (760)
+..+++...-.||-+.+++.+....+..++.-.. ..|...+..++ .....+.|.++++.+. .-|+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455666666788888888877776633333221 22333443333 2457788999999984 578877775
Q ss_pred HH-HHHHHhcCChhHHHHHHHHHhccCC----CCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 652 SL-LSACTIYGNIDLGLLAGSKLLELQP----DNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 652 ~l-~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.. .+.+...|+.++|++.++++..... -....++-+++++.-+++|++|.+.+.++.+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 55 4456788999999999999886332 25668889999999999999999999999874
No 275
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.16 E-value=0.9 Score=42.39 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=72.6
Q ss_pred HHHHHhcC--CCChHhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 041183 533 KRAFRKIC--RDSLAGWNAMMMGYAQH-----GCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAG------------ 593 (760)
Q Consensus 533 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------------ 593 (760)
+..|.... +.|-.+|-..+..|... +.++=....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455554 55666777777766543 455666677888889999889999999888765432
Q ss_pred ----cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh
Q 041183 594 ----LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL 631 (760)
Q Consensus 594 ----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 631 (760)
.-.-+++++++|.. +|+.||..+-..|+.++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22457889999988 89999999999999999888864
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.07 E-value=12 Score=42.76 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhccCcHHHHHHHH
Q 041183 527 GTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVL----TSCCHAGLVREARTYL 602 (760)
Q Consensus 527 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~----~~~~~~g~~~~A~~~~ 602 (760)
+++++|+.-+..+. ...|.-.+..--++|-+.+|+.++ +|+...+.... ..+...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555554443 222333333344555666665543 46655544444 4455677778887777
Q ss_pred HHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 603 SCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIW--QSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
+..-+ ...-+.+|..+|+|.+|..+-.++....+...- ..|...+...++.-+|-+++++.... |
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~-- 1029 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P-- 1029 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H--
Confidence 76654 234566778889999999998888644443332 66777788888888887777766542 1
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHH
Q 041183 681 ESTYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
......|++...|++|+++-.
T Consensus 1030 ----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHHHH
Confidence 122233445555555554433
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.87 E-value=0.17 Score=30.50 Aligned_cols=30 Identities=27% Similarity=0.260 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666677777777777777777666
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.68 E-value=0.74 Score=39.47 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=52.8
Q ss_pred hHHHHHHHHh---hhcCChHHHHHHHHhCC-CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHH
Q 041183 616 EHYACIVDLL---GRVGLLEGAKMTIDQMP-IPPDAHIWQSL-LSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNL 690 (760)
Q Consensus 616 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 690 (760)
.+.+.|++.+ .+.++.+++..++..+. ..|.......+ ...+...|++.+|..+++.+.+-.|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4455555544 46677777777777773 44544433322 4446677888888888888777777667666677777
Q ss_pred HHhcCCh
Q 041183 691 YASAGMW 697 (760)
Q Consensus 691 ~~~~g~~ 697 (760)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 7666664
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.63 E-value=5.9 Score=34.65 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=81.7
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 041183 362 LDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKK 441 (760)
Q Consensus 362 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (760)
.+.++.+.+.++.|+...+..+++.+.+.|++.... .++..++-+|.......+-.+.. ....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 456666777888888889999999999888866544 44455666666554444332322 222333332233222
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041183 442 NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALK 506 (760)
Q Consensus 442 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 506 (760)
=...+..++..+...|++-+|++..+.... .+......++.+..+.+|...--.+++-..+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223556677788888888888888877532 1222334566676677776666566555554
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.61 E-value=35 Score=42.66 Aligned_cols=312 Identities=12% Similarity=0.048 Sum_probs=160.1
Q ss_pred HHHHhcCcCCHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhh-cCCCCcccHHHHHHHHHhcCCh
Q 041183 383 ILEAVSNSKSLKQAMQVHSHIIKSGF--LLDDSMISCLITTYGKCNALNESKRVLSE-IDKKNAVHINALASVLVYASCH 459 (760)
Q Consensus 383 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 459 (760)
+..+-.+.+.+..|...++.-..... ......+..+...|...+++|....+... ...+ ....-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 33344555666666666665210000 11223444455577777777776666553 2222 223334455667888
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHH-HHHHHHHHhcCCHHHHHHHHHh
Q 041183 460 AEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVE-SAVIDMYCKCGTIEDAKRAFRK 538 (760)
Q Consensus 460 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~ 538 (760)
+.|..-|+.+.+.+ ++...+++.++......+.+.......+-..... .+....+ +.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888887653 2235567777776666677766665444433322 1222222 222344456667776666655
Q ss_pred cCCCChHhHHHH--HHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH----------
Q 041183 539 ICRDSLAGWNAM--MMGYAQHGCY--HEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSC---------- 604 (760)
Q Consensus 539 ~~~~~~~~~~~l--~~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---------- 604 (760)
..+...|... +..+.+..+- -.-....+.+.+.-+.| +.+|...|.+..+.+++-.
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 2333222221 11112333333321111 1112222211111111111
Q ss_pred hhhhcCCCCChhHH-HH--HHHHhhhcCChHHHHHHH---Hh------CC---CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041183 605 MSDLHGLIPQLEHY-AC--IVDLLGRVGLLEGAKMTI---DQ------MP---IPPDAHIWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 605 ~~~~~~~~~~~~~~-~~--l~~~~~~~g~~~~A~~~~---~~------~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~ 669 (760)
.....++.++..+. +. ...-+.+.+....+.+-+ .+ |. ...-..+|....+...+.|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11111233321111 00 111111222222222221 11 11 222356899999999999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 670 GSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 670 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
+-.+.+..+ +.++...+..+.+.|+...|+.++++......
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 999998874 67889999999999999999999999886544
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.49 E-value=0.71 Score=38.81 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=24.4
Q ss_pred cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 660 YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 660 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.++.+++..++..+.-+.|+.+..-..-++.+...|+|.+|.++|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 44444444444444444554444444444445555555555555544443
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.11 E-value=16 Score=37.72 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 041183 548 NAMMMGYAQHGCYHEVSNLFNKMSKFGVKP--DEITYLAVLTSCCHAGLVREARTYLSCMS 606 (760)
Q Consensus 548 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (760)
..+..++.+.|+.++|++.+++|.+.. ++ +......|++++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345556666777777777777776531 12 12344556677777777777777777654
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.10 E-value=0.29 Score=29.33 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 681 ESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 681 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+.++..++.++...|++++|++.+++..+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999998764
No 284
>PRK09687 putative lyase; Provisional
Probab=91.70 E-value=14 Score=36.04 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=13.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344445555553 45555555555555
No 285
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.64 E-value=1.8 Score=38.30 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=70.8
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 041183 589 CCHAGLVREARTYLSCMSDLHGLIPQ-----LEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPD-AHIWQSLLSACTIYG 661 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~ 661 (760)
+.+.|++++|..-|..+.+ .+++. ...|..-..++.+.+.++.|++-..+. .+.|. .....--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4556677777777766666 23332 234555556667777777777766655 23332 223333345677888
Q ss_pred ChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHH--HHHHHHHh
Q 041183 662 NIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVG--KLRKEMKE 709 (760)
Q Consensus 662 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~ 709 (760)
.+++|++-|+++++.+|....+-...+++--......+++ +.+.++++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKd 232 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKD 232 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976655554444433333333333 23444444
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.52 E-value=0.27 Score=30.14 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
No 287
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.51 E-value=2.6 Score=42.50 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=86.5
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHH
Q 041183 590 CHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGL 667 (760)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 667 (760)
...|+.-.|-+-+....+...-.|+.. ......+...|+++.+...+.... +.....+...+++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 456676666554444444233334433 333344566788888888887773 4455667778888888888888888
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCce
Q 041183 668 LAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGY 718 (760)
Q Consensus 668 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 718 (760)
...+.++..+-+++.+....+-.-.+.|-++++..+|+++..-..+.+.|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888888887766777776666666777888888888888877666666654
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.49 E-value=3.2 Score=43.31 Aligned_cols=157 Identities=13% Similarity=-0.003 Sum_probs=98.9
Q ss_pred HHHHHhcCCHHHHHHHHH--hcC-CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 041183 520 IDMYCKCGTIEDAKRAFR--KIC-RDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVR 596 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 596 (760)
.+...-.++++++.+... .+. .-...-.+.++.-+.+.|..+.|+++-+ |..+ -.+...+.|+++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHH
Confidence 445566788888766664 221 1223457788888888888888887543 2221 123345788888
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 041183 597 EARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLEL 676 (760)
Q Consensus 597 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 676 (760)
.|.++.+. ..+...|..|.+...++|+++-|.+.|++.+ -|..|+-.|...|+.+.-.++.+.+...
T Consensus 336 ~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88776433 3466789999999999999999999998886 2556666777888887777777666654
Q ss_pred CCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 677 QPDNESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 677 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
+- +.....++.-.|+.++..+++.+
T Consensus 403 ~~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 44555566777888888888775
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.43 E-value=12 Score=34.67 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhh--cCCCCChhHHHHH
Q 041183 549 AMMMGYAQHGCYHEVSNLFNKMSKF----GVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDL--HGLIPQLEHYACI 621 (760)
Q Consensus 549 ~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l 621 (760)
.....+.+..++++|-..+.+-... .-.|+. ..|...|-.+....++..|...++.-.+- +.-+-+..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 3344555555555554444332211 011222 33445555566666777777777764431 1112235566666
Q ss_pred HHHhhhcCChHHHHHHH
Q 041183 622 VDLLGRVGLLEGAKMTI 638 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~ 638 (760)
+.+| ..|+.+++.+++
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 6665 356666665554
No 290
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.25 E-value=11 Score=34.07 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHhcCCCChH-hHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 041183 513 IFVESAVIDMYCKCGTIEDAKRAFRKICRDSLA-GWNAM--MMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 513 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
+.+||.|.--+...|+++.|.+.|+..-+-|+. -|..+ .-++.-.|++.-|.+-+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 566666666666777777777777666443332 11111 1122234666666665555554
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.24 E-value=8.9 Score=36.38 Aligned_cols=60 Identities=18% Similarity=0.051 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
++.....|...|.+.+|.++-++++.++|-+...+..|...+...|+-=.|.+.++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344456788999999999999999999999999999999999999999999998888764
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.97 E-value=0.46 Score=28.52 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999998764
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.75 E-value=12 Score=33.77 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=98.4
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 041183 544 LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVL--TSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI 621 (760)
Q Consensus 544 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 621 (760)
+..||-+.--+...|+++.|.+.|+...+ +.|.. -|..+- -++.-.|++..|.+-+...-+...-.|-...|-.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 45789999999999999999999999988 55632 122222 24556799999988777766522223322333222
Q ss_pred HHHhhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------chhHHHHHHHHHh
Q 041183 622 VDLLGRVGLLEGAKMTI-DQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN-------ESTYVLLSNLYAS 693 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 693 (760)
+ ...-++.+|..-+ ++.. ..|..-|..-+-.+.- |+.. .+.+++++.+..-++ ..+|+.|+.-+..
T Consensus 176 ~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 176 N---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred H---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2 2344677776544 3433 3444555444444332 2111 123444444433332 5689999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 041183 694 AGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 694 ~g~~~~A~~~~~~~~~~ 710 (760)
.|+.++|..+|+-....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999977654
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.36 E-value=5.4 Score=34.54 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=28.0
Q ss_pred HhcCCHHHHHHHHHhcCCC-C---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 041183 524 CKCGTIEDAKRAFRKICRD-S---LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP 577 (760)
Q Consensus 524 ~~~~~~~~A~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 577 (760)
...|.+++.....+.+..+ + ...-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 4455566655555555322 1 1123445555556666666666666665533333
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.24 E-value=0.4 Score=28.43 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 683 TYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++..++.++.+.|++++|.++|+++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667788888888888888888887765
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.22 E-value=1.4 Score=42.03 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.++..++..+...|+++.+...+++.+..+|-+...|..+..+|.+.|+...|+..++++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44555666677777777778888888888887777888888888888888888877777655
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.12 E-value=12 Score=32.42 Aligned_cols=86 Identities=16% Similarity=0.053 Sum_probs=42.8
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCChhHH-HHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHH
Q 041183 590 CHAGLVREARTYLSCMSDLHGLIPQLEHY-ACIVDLLGRVGLLEGAKMTIDQMP-IPPDAHIWQSLLSACTIYGNIDLGL 667 (760)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~ 667 (760)
.+.++.+.+..++..+.- +.|..... ..-+..+...|+|.+|..+|+++. ..|....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 455566666666666654 44442221 112233456677777777777663 3344444444554444443333333
Q ss_pred HHHHHHhccCC
Q 041183 668 LAGSKLLELQP 678 (760)
Q Consensus 668 ~~~~~~~~~~p 678 (760)
...+++++..|
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 33444444444
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.01 E-value=14 Score=33.04 Aligned_cols=90 Identities=13% Similarity=-0.042 Sum_probs=59.7
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCC
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIPQ--LEHYACIVDLLGRVGLLEGAKMTIDQMPIPP--DAHIWQSLLSACTIYGN 662 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~ 662 (760)
..+...++++.|...++.... ....-+ ...--.|.......|.+++|...++... .+ .......-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCc
Confidence 567788888888888887764 111111 1222345667778888888888887764 22 22223444566788888
Q ss_pred hhHHHHHHHHHhccCC
Q 041183 663 IDLGLLAGSKLLELQP 678 (760)
Q Consensus 663 ~~~A~~~~~~~~~~~p 678 (760)
.++|...|+++++..+
T Consensus 175 k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 175 KQEARAAYEKALESDA 190 (207)
T ss_pred hHHHHHHHHHHHHccC
Confidence 8888888888888765
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.96 E-value=0.95 Score=43.42 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=61.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG 629 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 629 (760)
..-|.+.|.+++|+..|.+... +.| |.+++..-..+|.+...+..|..-...+.. .| ...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4569999999999999998887 678 888888888999999999988776666554 11 33456666655
Q ss_pred C-------hHHHHHHHHhC-CCCCCH
Q 041183 630 L-------LEGAKMTIDQM-PIPPDA 647 (760)
Q Consensus 630 ~-------~~~A~~~~~~~-~~~p~~ 647 (760)
. ..+|.+-++.. ..+|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 4 44444444433 255653
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.84 E-value=13 Score=32.42 Aligned_cols=122 Identities=13% Similarity=0.063 Sum_probs=73.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH--HHHhhhcCC
Q 041183 554 YAQHGCYHEVSNLFNKMSKFGVKPDE-ITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI--VDLLGRVGL 630 (760)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 630 (760)
+++.+..++|+.-|..+.+.|...-. .............|+-..|...|+++-.+..++.-..-...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35667778888888877776543211 111122234567788888888888887632222211122222 223456777
Q ss_pred hHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 631 LEGAKMTIDQMP---IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 631 ~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
+++.....+.+. .+-....-..|.-+-.+.|++..|...|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 887777777663 222344556777777888888888888888776
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.81 E-value=5.8 Score=35.46 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhhhhc--CCCCChhHHHHH
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSCCHAGLVREARTYLSCMSDLH--GLIPQLEHYACI 621 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l 621 (760)
.+..+...|++.|+.+.|++.|.++.+....|.. ..+..+++.....+++..+...+.++.... +-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556666777777777777777777765444433 344555666666777777776666665411 111111111111
Q ss_pred HHH--hhhcCChHHHHHHHHhC
Q 041183 622 VDL--LGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 622 ~~~--~~~~g~~~~A~~~~~~~ 641 (760)
..+ +...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 111 23456677766666555
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.48 E-value=6.6 Score=38.47 Aligned_cols=125 Identities=12% Similarity=0.117 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhc----CCHHHHHHH
Q 041183 160 FDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRC----GQKLDAVKM 235 (760)
Q Consensus 160 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~ 235 (760)
+++.+.+++.|.+.|..-+..+|.+..-.. ..... -....|..+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~--------------------------------~~~~~~~~~~~~~ra~~i 125 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIIL--------------------------------EEEEKEDYDEIIQRAKEI 125 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHH--------------------------------HhcccccHHHHHHHHHHH
Confidence 346778889999999988888774432111 11111 124456666
Q ss_pred hccCCC-------CCcchHHHHHHhhc-----ChhHHHHHHHHHhhCCccCCcc--hHHHHHHhhcCCCc--chHHHHHH
Q 041183 236 FDEITE-------PDVVSWSERIAAAC-----DGVEAFGLFKDLRFNDFQINEY--TMINLLSSVGGERI--LRAGKQIQ 299 (760)
Q Consensus 236 ~~~~~~-------~~~~~~~~ll~~~~-----~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~ 299 (760)
++.|.+ ++..++..+++.-. -.+.....|+.+...|+..+.. ....+|..+....+ +..+..++
T Consensus 126 y~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 126 YKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 766654 45555656655544 3344555666666666554433 23333333332222 33555666
Q ss_pred HHHHHHcCCCCchhHhH
Q 041183 300 AFCYKVGFMEVVSIGNA 316 (760)
Q Consensus 300 ~~~~~~g~~~~~~~~~~ 316 (760)
+.+.+.|+++....|..
T Consensus 206 ~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHcCCccccccccH
Confidence 66666666655554443
No 303
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.36 E-value=2.9 Score=34.43 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhc-cCCC-CchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 645 PDAHIWQSLLSACTIYG---NIDLGLLAGSKLLE-LQPD-NESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 645 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++..+-..+.+++.... |..+.+.+++...+ -.|. .....+.|+-.+++.|+|+.++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444445554433 33344555555554 2222 3334445555566666666666666555443
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.28 E-value=0.58 Score=26.08 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888888775
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.08 E-value=12 Score=36.64 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCc--HHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 041183 561 HEVSNLFNKMSKFGVKPDE--ITYLAVLTSCCHAGL--VREARTYLSCMSDLHGLIPQLEHYACIVDL 624 (760)
Q Consensus 561 ~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 624 (760)
+.+..+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+ .++++....|..++-.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 4566778888887776633 333333333322222 4467788888887 6888877766555443
No 306
>PRK10941 hypothetical protein; Provisional
Probab=88.99 E-value=4.8 Score=38.64 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEE
Q 041183 649 IWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTH 728 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (760)
..+.|-.++.+.++++.|+.+.+.++.+.|+++.-+...|.+|.+.|.+..|..-++...+.. |.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----P~----------- 247 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----PE----------- 247 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----CC-----------
Confidence 346677788999999999999999999999999999999999999999999999988776552 21
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHH
Q 041183 729 HFYAGDSSHSQSKEIYKELIKLYEH 753 (760)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (760)
.|.+..|...+.++..+
T Consensus 248 --------dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 248 --------DPISEMIRAQIHSIEQK 264 (269)
T ss_pred --------chhHHHHHHHHHHHhhc
Confidence 46677777776666543
No 307
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.92 E-value=35 Score=36.24 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=61.6
Q ss_pred chhHhHHHHhhhcCCChHHHHHHHhcCCCCCeee---HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 041183 311 VSIGNALISMYGKCGQVNDARSIFDYLIFKDSVS---WNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAV 387 (760)
Q Consensus 311 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 387 (760)
...++.+|.---...+.+.+..++..+...=+.. |......=.+.|..+.+.++|++-+.. ++-+...|...+..+
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3344444444333344444445554443222222 223333334556666666666666552 444444444444333
Q ss_pred c-CcCCHHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 041183 388 S-NSKSLKQAMQVHSHIIKS-GFL-LDDSMISCLITTYGKCNALNESKRVLSEIDKK 441 (760)
Q Consensus 388 ~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (760)
+ ..|+.+.....|+..... |.. .+...|...+..-..++++.....+++++.+-
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 2 345566666666655542 221 23344455555555555566666666555543
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.67 E-value=1 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999998765
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.29 E-value=32 Score=35.02 Aligned_cols=54 Identities=13% Similarity=-0.067 Sum_probs=30.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALK 506 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 506 (760)
.+.+..+.|+++...+........ .++...+..+... ..++.+.+....+.+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 345667788888744444444321 1233333333322 77788887777766655
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.19 E-value=45 Score=36.64 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 041183 627 RVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGL 667 (760)
Q Consensus 627 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 667 (760)
+.+++++|+++.++ ..|...|..|+......-.+-.++
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 44566666666655 457888888888776655444443
No 311
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.08 E-value=47 Score=36.78 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=40.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHh--
Q 041183 449 LASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKAR-YDQDIFVESAVIDMYCK-- 525 (760)
Q Consensus 449 l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 525 (760)
....+.-.|.++.|++.+.+ ..+...+.+.+...+.-+.-.+-.+... ..+.... -.|.+.-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34566778888888888876 2233455566666555543333222211 2222211 01112556777877775
Q ss_pred -cCCHHHHHHHHHhcC
Q 041183 526 -CGTIEDAKRAFRKIC 540 (760)
Q Consensus 526 -~~~~~~A~~~~~~~~ 540 (760)
..+..+|.++|--+.
T Consensus 339 ~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 339 EITDPREALQYLYLIC 354 (613)
T ss_dssp TTT-HHHHHHHHHGGG
T ss_pred hccCHHHHHHHHHHHH
Confidence 457888888887765
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.03 E-value=2.9 Score=32.26 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 668 LAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 668 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..+++.++.+|+|......++..+...|++++|++.+-++.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455555666666666666666666666666666666666554
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.75 E-value=5.1 Score=38.43 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhh----hcCCCCChhHHHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSD----LHGLIPQLEHYAC 620 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~ 620 (760)
+..++..+...|+.+.+.+.++++.. ..| +...|..++.+|.+.|+...|+..|+.+.+ +.|+.|...+...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44455555555555555555555555 344 445555566666666665555555555543 2344454444433
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.45 E-value=19 Score=31.55 Aligned_cols=31 Identities=6% Similarity=0.077 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 041183 399 VHSHIIKSGFLLDDSMISCLITTYGKCNALN 429 (760)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (760)
+++.+.+.+++|+...+..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444455666666666666666666666554
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=5.7 Score=38.00 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=71.1
Q ss_pred cCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChH-----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 041183 507 ARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC-RDSLA-----GWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEI 580 (760)
Q Consensus 507 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 580 (760)
.|.+.+..+...++..-....+++++...+-++. .++.. +-...++.+. .-+.++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4555566666666666666778888888887764 22211 1112222222 236778888888888999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 581 TYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 581 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
+++.+++.+.+.+++.+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888777765
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.35 E-value=30 Score=33.75 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=13.9
Q ss_pred HHHHHHHhcCChhHHHHHHHH
Q 041183 686 LLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 686 ~l~~~~~~~g~~~~A~~~~~~ 706 (760)
.-+..+++.++|++|.+.++-
T Consensus 251 ~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 251 NKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHhhcCHHHHHHHHHH
Confidence 334556677777777777764
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.31 E-value=1.2 Score=28.18 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
++.|...|...|++++|+.+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 33444444444444444444444443
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.07 E-value=96 Score=39.20 Aligned_cols=309 Identities=10% Similarity=-0.006 Sum_probs=158.9
Q ss_pred HHHHHHHhcCCccHHHHHHHHH----HHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 041183 347 SMIAGYSENGFFNQALDMFCHM----LEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTY 422 (760)
Q Consensus 347 ~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 422 (760)
.+..+-.+.+.+.+|+-.++.- .+. .-...-|..+...|...++++...-+...-. -+...+ .-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHH
Confidence 4555667788888998888873 221 1122334555558889999888877766411 122222 334456
Q ss_pred HhcCChHHHHHHHhhcCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhH-HHHHHHHHhccCCHHHHH
Q 041183 423 GKCNALNESKRVLSEIDKKN---AVHINALASVLVYASCHAEALELYRTIWGSCREVNGST-FSIVLKACAAMTDLEQGK 498 (760)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~ 498 (760)
...|++..|...|+.+.+.+ ...++.++......|.++..+-..+-..... .+.... ++.-+.+-=+.++++..+
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 77899999999999998753 4567777777777777777766555443321 122222 222333445666777666
Q ss_pred HHHHHHHHcCCCCCchHHHH--HHHHHHhcCCHH-----HHHHHHHhc-C---------CCChHhHHHHHHHHHHcCCHH
Q 041183 499 AIHCLALKARYDQDIFVESA--VIDMYCKCGTIE-----DAKRAFRKI-C---------RDSLAGWNAMMMGYAQHGCYH 561 (760)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~-----~A~~~~~~~-~---------~~~~~~~~~l~~~~~~~~~~~ 561 (760)
..+. .. +..+|.. ++..+.+..+-+ +..+..+.. . ..-...|..++..+.-..--.
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6554 11 1112221 222222221111 111111111 0 001123444444433221111
Q ss_pred HHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCcHHHHHHHHHH-hhh---hcCCCC-ChhHHHHHHHHhhhcCC
Q 041183 562 EVSNLFNKMSKFGVKPDEI------TYLAVLTSCCHAGLVREARTYLSC-MSD---LHGLIP-QLEHYACIVDLLGRVGL 630 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~-~~~---~~~~~~-~~~~~~~l~~~~~~~g~ 630 (760)
. .+... +..|+.. .|..-+.--....+..+-+-.+++ +.. ..+... -..+|.......-+.|+
T Consensus 1612 ~----~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 S----IEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred H----HHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 1 11111 1223221 111111111111111111111111 111 012222 24778888888888999
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 631 LEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 631 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
++.|...+-.+....-+..+.-...-+...|+...|+.++++.+++.
T Consensus 1686 ~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99998887666423345566667777889999999999999999743
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.92 E-value=1.2 Score=28.17 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.++..++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788999999999999999999999765
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.73 E-value=1.1 Score=26.41 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
+..+..++.+.|++++|.+.++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445667788889999999999999998885
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.63 E-value=0.29 Score=42.22 Aligned_cols=18 Identities=6% Similarity=0.015 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHhHhcCC
Q 041183 211 VCNHLNNAIMNLYVRCGQ 228 (760)
Q Consensus 211 ~~~~~~~~li~~~~~~g~ 228 (760)
.++.+|..+++.+...+.
T Consensus 123 ~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 123 DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SSSHHHHHHHHHHCTSTC
T ss_pred CcHHHHHHHHHHHHhcCc
Confidence 345566666666655443
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.50 E-value=1.6 Score=38.12 Aligned_cols=83 Identities=14% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc---CChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC-
Q 041183 595 VREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV---GLLEGAKMTIDQM--------PIPPD-AHIWQSLLSACTIYG- 661 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~- 661 (760)
++.|++..+.... .-+.|...++....++... ....++.+++++. .+.|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5566666666544 2344555555544444332 3323344444333 13444 356666666654333
Q ss_pred ----------ChhHHHHHHHHHhccCCC
Q 041183 662 ----------NIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 662 ----------~~~~A~~~~~~~~~~~p~ 679 (760)
.+++|...|+++.+.+|+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 134555555566666663
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.25 E-value=56 Score=35.72 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHh---hh----cCC
Q 041183 558 GCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLL---GR----VGL 630 (760)
Q Consensus 558 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~ 630 (760)
.+...|..++++..+.| .|...--...+..+.. ++++.+...+..+.+ .+.......-..+.... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccc
Confidence 35667777777777766 3332222222333333 555555555554444 22222111111111111 11 124
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC---hhHHHHH
Q 041183 631 LEGAKMTIDQMPIPPDAHIWQSLLSACTIY----GNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGM---WNDVGKL 703 (760)
Q Consensus 631 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~ 703 (760)
.+.+...+.+....-+......|...|... .+.+.|...+..+-... ....+.++..+..--- +..|.++
T Consensus 455 ~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred hhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 555666666665455555555555554332 35777777777777665 6777777777664311 5677777
Q ss_pred HHHHHh
Q 041183 704 RKEMKE 709 (760)
Q Consensus 704 ~~~~~~ 709 (760)
+.+..+
T Consensus 532 ~~~~~~ 537 (552)
T KOG1550|consen 532 YDQASE 537 (552)
T ss_pred HHHHHh
Confidence 776654
No 324
>PRK12798 chemotaxis protein; Reviewed
Probab=86.05 E-value=42 Score=34.11 Aligned_cols=184 Identities=13% Similarity=0.103 Sum_probs=120.4
Q ss_pred hcCCHHHHHHHHHhcCC----CChHhHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcH
Q 041183 525 KCGTIEDAKRAFRKICR----DSLAGWNAMMMGY-AQHGCYHEVSNLFNKMSKFGVKPDE----ITYLAVLTSCCHAGLV 595 (760)
Q Consensus 525 ~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~ 595 (760)
-.|+.++|.+.+..+.. +.+..|-.|+.+- ....+...|+.+|+...- .-|-. .....-+-.....|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 37889999999988853 3445677776654 455688999999998876 45632 3344444556788999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHH-HHHHhhh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041183 596 REARTYLSCMSDLHGLIPQLEHYAC-IVDLLGR---VGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGS 671 (760)
Q Consensus 596 ~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 671 (760)
+++..+-......+...|-...|.. +...+.+ .-..+.-..++..|.-.--...|..+...-...|+.+.|....+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9887776666654555565433333 3333333 33455566677777533345688888888899999999999999
Q ss_pred HHhccCCC----CchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 672 KLLELQPD----NESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 672 ~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
++..+.++ .......-+.+-.-..+.++|++.+..+.+.
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 99997632 2222222233334456788888888766544
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.49 E-value=3.2 Score=28.11 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 651 QSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 651 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
..+.-++.+.|+++.|.+..+.+++.+|+|..+...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 345667889999999999999999999987655443
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.30 E-value=5.7 Score=30.92 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 562 EVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
+..+-++.+....+.|+.......+.||.+..++..|.++|+.++.+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5566677777778899999999999999999999999999999988433 33336766664
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.11 E-value=27 Score=31.30 Aligned_cols=90 Identities=11% Similarity=-0.010 Sum_probs=67.8
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 041183 621 IVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQS-----LLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG 695 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 695 (760)
+...+..+|++++|...++.....|....+.. |.+.....|.++.|+..++...+-.= .+......+.++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 45667889999999999997643444444433 44556788999999999887654322 3445678899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 041183 696 MWNDVGKLRKEMKEKF 711 (760)
Q Consensus 696 ~~~~A~~~~~~~~~~~ 711 (760)
+-++|+.-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988764
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.03 E-value=17 Score=38.34 Aligned_cols=149 Identities=16% Similarity=0.018 Sum_probs=71.9
Q ss_pred hcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 041183 525 KCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSC 604 (760)
Q Consensus 525 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (760)
-.|+++.|-.++-.++++ ..+.++..+.+.|-.++|+++ .||...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 345555555544444321 233444455555555555442 2332111 1112355666666655444
Q ss_pred hhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhH
Q 041183 605 MSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTY 684 (760)
Q Consensus 605 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 684 (760)
.. +..-|..|.++..+.|++..|.+-|.+.. -|..|+-.+...|+-+.-..+-..+.+-...|
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N---- 725 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN---- 725 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc----
Confidence 32 23346666666666666666666665543 13344444445555554444444444333322
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 041183 685 VLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
....+|...|+++++++++.+
T Consensus 726 -~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -hHHHHHHHcCCHHHHHHHHHh
Confidence 222345556666666665553
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.79 E-value=6.4 Score=30.29 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 041183 559 CYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVD 623 (760)
Q Consensus 559 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 623 (760)
+.-++.+-++.+....+.|+.......++||.+.+|+..|.++|+.++.+ +..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 34456666777777778999999999999999999999999999988863 3334445655553
No 330
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.79 E-value=9 Score=35.73 Aligned_cols=153 Identities=20% Similarity=0.165 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCh
Q 041183 594 LVREARTYLSCMSDLHGLIP--QLEHYACIVDLLGRVGLLEGAKMTIDQMP--------IPPDAHIWQSLLSACTIYGNI 663 (760)
Q Consensus 594 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~ 663 (760)
.+++|+.-|+...+-.|-+- .......++....+.|++++..+.+.++- ..-+....++++.--....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45566666655554111111 12334455666666777777666666651 233445666666666666666
Q ss_pred hHHHHHHHHHhcc--CCC----CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCC
Q 041183 664 DLGLLAGSKLLEL--QPD----NESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSH 737 (760)
Q Consensus 664 ~~A~~~~~~~~~~--~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (760)
+.-.++|+..++. +.. ...+...|+.+|...|.+.+-.++++++.+.. +.+.|..-. +.-
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC-q~edGedD~-------------kKG 187 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC-QTEDGEDDQ-------------KKG 187 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh-ccccCchhh-------------hcc
Confidence 6666666655541 111 23455689999999999999999999987542 233321111 233
Q ss_pred CChHHHHHHHHHHHHHHHhhhcC
Q 041183 738 SQSKEIYKELIKLYEHMVATAKL 760 (760)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~ 760 (760)
.|.-|||..=.+.|-+.|+-+||
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkL 210 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKL 210 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHH
Confidence 55667777666666666665553
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.41 E-value=2 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 685 VLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 685 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
..|+.+|...|+.+.|++++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988653
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.98 E-value=6 Score=35.56 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CchhHHHHHHHHHhcCChhHHH
Q 041183 632 EGAKMTIDQMPIPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD----NESTYVLLSNLYASAGMWNDVG 701 (760)
Q Consensus 632 ~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 701 (760)
++|.+.|-.+...| +.......+.+|....|.++++.++-+++++.++ |+.++..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666553222 2233333444555577888888888888885422 6888889999999999888774
No 333
>PHA02875 ankyrin repeat protein; Provisional
Probab=83.97 E-value=59 Score=34.04 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=17.4
Q ss_pred hhhHHhhcCCCCchh--hhhHHHHhhccCChhHHHHhhh
Q 041183 3 YSLLIKNGHHLDPIL--STTLISHFTKFADFRRAFRFLF 39 (760)
Q Consensus 3 ~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 39 (760)
...+.+.|..|+... ..+.++..++.|+.+-+.-+++
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 56 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK 56 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 345555555554432 3344444455555554433333
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.81 E-value=8.2 Score=33.91 Aligned_cols=96 Identities=8% Similarity=0.085 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHH---HhccCcHHHHHHHHHHhhhhc----CCCCCh-hHHHHHHHHhhhcC-
Q 041183 560 YHEVSNLFNKMSKFGVKP-DEITYLAVLTS---CCHAGLVREARTYLSCMSDLH----GLIPQL-EHYACIVDLLGRVG- 629 (760)
Q Consensus 560 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g- 629 (760)
++.|.+.++.-.. ..| |...++.-..+ +.+.....++.+++++...+. .+.|+. ..+..+..+|...+
T Consensus 7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4556666665444 234 33433333333 444455566777777766532 356653 66777777775544
Q ss_pred ---ChHHHHHHHHhC--------CCCCCHHHHHHHHHHH
Q 041183 630 ---LLEGAKMTIDQM--------PIPPDAHIWQSLLSAC 657 (760)
Q Consensus 630 ---~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~ 657 (760)
+..+|.++|++. ...|+...|+.-+...
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 334444444443 2567777776655554
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.71 E-value=8.2 Score=32.71 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=47.2
Q ss_pred HHHHHHHHHH---HhccCcHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhCCCC-CCHHHHH
Q 041183 579 EITYLAVLTS---CCHAGLVREARTYLSCMSDLHGLIPQ---LEHYACIVDLLGRVGLLEGAKMTIDQMPIP-PDAHIWQ 651 (760)
Q Consensus 579 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~ 651 (760)
....+.|++. -...++.+++..+++.+.- +.|+ ..++. +..+...|+|.+|..+|.+.... +....-.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHH
Confidence 3444555543 3457889999999998876 5554 34443 34467889999999999998533 3333333
Q ss_pred HHHHHHHh
Q 041183 652 SLLSACTI 659 (760)
Q Consensus 652 ~l~~~~~~ 659 (760)
.|...|..
T Consensus 82 AL~A~CL~ 89 (153)
T TIGR02561 82 ALLALCLN 89 (153)
T ss_pred HHHHHHHH
Confidence 44444433
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.41 E-value=2 Score=24.61 Aligned_cols=29 Identities=34% Similarity=0.292 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
|..+...+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33344444444555555555555544444
No 337
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.26 E-value=4 Score=37.37 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=25.8
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
+.+..+++.+.+--.+++++.|+.....+.++..+.....+++|+..+.+.
T Consensus 54 hlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 54 HLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555444
No 338
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.23 E-value=0.74 Score=44.36 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=47.7
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 629 GLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 629 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
|.++.|++.|... + .+|....|..-..++.+.++...|++-+..+++++|+....|-.-+.+....|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 3444444444443 1 2233333444444555556666666666666666666666666666666666666666666666
Q ss_pred HHhCCCCCCC
Q 041183 707 MKEKFLCKEP 716 (760)
Q Consensus 707 ~~~~~~~~~~ 716 (760)
..+.++....
T Consensus 208 a~kld~dE~~ 217 (377)
T KOG1308|consen 208 ACKLDYDEAN 217 (377)
T ss_pred HHhccccHHH
Confidence 5555544333
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.00 E-value=46 Score=31.33 Aligned_cols=220 Identities=12% Similarity=0.134 Sum_probs=125.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC---CC--CCChhHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCchH
Q 041183 446 INALASVLVYASCHAEALELYRTIWGS---CR--EVNGSTFSIVLKACAAMTDLEQGKAIHCLALK-----ARYDQDIFV 515 (760)
Q Consensus 446 ~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 515 (760)
...++..+.+.+++++.+..+++|..- .+ .-+..+.+.++.-.....+.+....+++.-.+ .+-..-..|
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344566666777777777666665321 11 23445677777777766776666666544332 111222344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CC-----C-------hHhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 041183 516 ESAVIDMYCKCGTIEDAKRAFRKIC---RD-----S-------LAGWNAMMMGYAQHGCYHEVSNLFNKMSKFG-VKPDE 579 (760)
Q Consensus 516 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~-----~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~ 579 (760)
-..|...|...+.+.+...++..+. +. | ...|..-|+.|...++-.....+|++...-. --|-+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 4567788888888888888877662 11 1 1257777888888888888888888765422 23444
Q ss_pred HHHHHHHHHH-----hccCcHHHHHHHHHHhhhhc---CCCC--ChhHHHHHHHHhhhcC----ChHHHHHHHHhCCCCC
Q 041183 580 ITYLAVLTSC-----CHAGLVREARTYLSCMSDLH---GLIP--QLEHYACIVDLLGRVG----LLEGAKMTIDQMPIPP 645 (760)
Q Consensus 580 ~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~p 645 (760)
... .+|+-| .+.|.+++|-.-|=++.+.. |-+. +..-|..|..++.+.| +-++|.- .+..|
T Consensus 228 lIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdP 302 (440)
T KOG1464|consen 228 LIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDP 302 (440)
T ss_pred HHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCH
Confidence 333 344444 46788888765443333312 2221 1234566667777666 2222211 12556
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 041183 646 DAHIWQSLLSACTIYGNIDLGLLAGS 671 (760)
Q Consensus 646 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 671 (760)
...+...|+.+|.. ++..+-++++.
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 67778888888855 34444334333
No 340
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.93 E-value=15 Score=32.89 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041183 447 NALASVLVYASCHAEALELYRTIWGSCREVNG--STFSIVLKACAAMTDLEQGKAIHCLALK 506 (760)
Q Consensus 447 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 506 (760)
..+..-|.+.|+.++|++.|.++.+....+.. ..+-.++..+...+++..+.....++..
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555444333222 2345566666666777776666665554
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.56 E-value=4.9 Score=34.04 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=35.5
Q ss_pred hhhhHHHHhhccCChhHHHHhhhcCC---------CCCcchHHHHHHHHHhcCCc-chHHHHHHHHHhCCCCCCcccHHH
Q 041183 17 LSTTLISHFTKFADFRRAFRFLFDTQ---------NRDIITYNALISGLARFCQS-GPALKLFDRLRYQGLRPDAFTFSS 86 (760)
Q Consensus 17 ~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ 86 (760)
..|.++.-..-.+.+...+.+++.+. ..+-..|+.++.+.++.... --+..+|..|.+.+.+++...|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34455555555555555555554442 12333455555555443331 224444555555445555555555
Q ss_pred HHHHhc
Q 041183 87 LVKACG 92 (760)
Q Consensus 87 ll~~~~ 92 (760)
++++|.
T Consensus 121 li~~~l 126 (145)
T PF13762_consen 121 LIKAAL 126 (145)
T ss_pred HHHHHH
Confidence 555543
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.37 E-value=94 Score=34.51 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=14.1
Q ss_pred hhcCChHHHHHHHHhCCCCC
Q 041183 626 GRVGLLEGAKMTIDQMPIPP 645 (760)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~p 645 (760)
...|++++|++.++++++-|
T Consensus 516 ~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 516 YHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHTT-HHHHHHHHHHTT-S-
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 57888999999998887555
No 343
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.07 E-value=1.9 Score=43.86 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=47.2
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHH
Q 041183 627 RVGLLEGAKMTIDQM-PIPPDAHIWQSL-LSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLR 704 (760)
Q Consensus 627 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 704 (760)
+.+.++.|+.++.++ ...|+-..|.+. ..++.+.+++..|+.-+.++++++|.....|..-+.++.+.+++.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 344455555555444 234443333222 245566666666666666666666666666666666666666666666666
Q ss_pred HHHH
Q 041183 705 KEMK 708 (760)
Q Consensus 705 ~~~~ 708 (760)
+...
T Consensus 96 ~~~~ 99 (476)
T KOG0376|consen 96 EKVK 99 (476)
T ss_pred HHhh
Confidence 6544
No 344
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.01 E-value=12 Score=25.31 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 683 TYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 683 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.+..++.++.+.|++++|+++.+.+.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4677888999999999999999999876
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.71 E-value=5.2 Score=41.66 Aligned_cols=100 Identities=21% Similarity=0.061 Sum_probs=74.3
Q ss_pred hccCcHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhH
Q 041183 590 CHAGLVREARTYLSCMSDLHGLIPQ--LEHYACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDL 665 (760)
Q Consensus 590 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 665 (760)
...|+...|.+.+..+.. ..|- ....-.|...+.+.|-...|-.++.+.- ....+.++..+.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 456888888888887765 3332 2334556777777777778877776552 34556778888899999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHH
Q 041183 666 GLLAGSKLLELQPDNESTYVLLSNLYA 692 (760)
Q Consensus 666 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 692 (760)
|++.++++++++|+++.+-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998888887765544
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.66 E-value=25 Score=27.41 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 041183 520 IDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYL 583 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 583 (760)
+..+...|++++|..+.+.++.||+.+|-.|.. .+.|-.+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445677899999999999998999998877755 46677777777777777775 45544443
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.10 E-value=10 Score=34.42 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=41.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 679 (760)
.+.-++.+.+.+..++|+...+.- + .+.|...-..++..++-.|++++|..-++-+-++.|+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 344556667777777777766543 3 2344556666777777888888888887777777774
No 348
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.70 E-value=3 Score=25.05 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=14.2
Q ss_pred CCchHHHHHHHHHHhcCCHHHHH
Q 041183 511 QDIFVESAVIDMYCKCGTIEDAK 533 (760)
Q Consensus 511 ~~~~~~~~l~~~~~~~~~~~~A~ 533 (760)
-+...|..+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666666666666666666654
No 349
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.28 E-value=13 Score=34.40 Aligned_cols=60 Identities=13% Similarity=-0.030 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 651 QSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 651 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
...-..+...|++-++++.-..++...|.|..+|+..+.+....=+.++|..-|.+..+.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 334445567788888888888888888888889988888888888888888888877654
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.53 E-value=90 Score=32.61 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Q 041183 446 INALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK 525 (760)
Q Consensus 446 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 525 (760)
.-+++..+.++-.+.-...+..+|..-| -+...|..++.+|... ..+.-..+|+++.+..+ .|...-..|+..|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH
Confidence 3344555555555555555556665533 3445555666666555 44555556666666543 233333344444443
Q ss_pred cCCHHHHHHHHHhc
Q 041183 526 CGTIEDAKRAFRKI 539 (760)
Q Consensus 526 ~~~~~~A~~~~~~~ 539 (760)
++...+..+|.++
T Consensus 145 -ik~sk~a~~f~Ka 157 (711)
T COG1747 145 -IKKSKAAEFFGKA 157 (711)
T ss_pred -hchhhHHHHHHHH
Confidence 5555555555544
No 351
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=78.42 E-value=1.5 Score=35.84 Aligned_cols=31 Identities=52% Similarity=0.749 Sum_probs=24.3
Q ss_pred ceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHH
Q 041183 717 GYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLY 751 (760)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (760)
|++|..+ +.|.+|+++||+...++..+..-|
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~ 32 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGY 32 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCC
Confidence 5778877 999999999999966666555444
No 352
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=77.98 E-value=86 Score=32.06 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=51.0
Q ss_pred hHHHHhhhcCCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhc
Q 041183 315 NALISMYGKCGQVNDARSIFDYLIFK---DSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVS 388 (760)
Q Consensus 315 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 388 (760)
..|+.-|...|++.+|.+++.++.-| ....+.+++.+.-+.|+-...+.+++..-..|+ .|-+.+-+++.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 45677788889999999999888665 355788888888888888888888888776653 34444444443
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.57 E-value=15 Score=28.39 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHH
Q 041183 361 ALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHII 404 (760)
Q Consensus 361 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 404 (760)
+.+-++.+....+.|++....+.+++|.+.+++..|.++++.+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555555667777777777777777777777777776655
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.32 E-value=27 Score=27.22 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.5
Q ss_pred HhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhc-ChhHHHHHHHHHhhCC
Q 041183 222 LYVRCGQKLDAVKMFDEITEPDVVSWSERIAAAC-DGVEAFGLFKDLRFND 271 (760)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-~~~~a~~~~~~m~~~~ 271 (760)
.+...|++++|..+.+.+.-||..+|-++-..-. -.......+..|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHHHhhccHHHHHHHHHHHHhCC
Confidence 4567899999999999998899999877766655 3333444455555544
No 355
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.20 E-value=21 Score=37.65 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=63.0
Q ss_pred HHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHH
Q 041183 422 YGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIH 501 (760)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 501 (760)
..+.|+++.|.++..+. .+..-|..|..+....++...|.+.|....+ |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 44567777777665443 2445577777777777777777777766543 445666666677777666666
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHh
Q 041183 502 CLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRK 538 (760)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 538 (760)
....+.|. . |.-..+|...|+++++.+++..
T Consensus 716 ~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 66666552 2 2334456667777777777644
No 356
>PRK09687 putative lyase; Provisional
Probab=76.78 E-value=78 Score=30.93 Aligned_cols=74 Identities=4% Similarity=-0.064 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 041183 511 QDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSC 589 (760)
Q Consensus 511 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 589 (760)
++..+-...+.++.+.|+..-.-.+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 445555555555555555333333333333333 123445555555553 455566655552 34544444444444
No 357
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.92 E-value=1.3e+02 Score=33.25 Aligned_cols=106 Identities=8% Similarity=0.036 Sum_probs=65.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCH
Q 041183 150 MVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQK 229 (760)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (760)
-|+.+.+.+.+++|+.+.+.-. |..|.. ....++...|..+.-.|+.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~--~~~~~~-------------------------------~i~kv~~~yI~HLl~~~~y 408 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI--GNEERF-------------------------------VIKKVGKTYIDHLLFEGKY 408 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc--CCcccc-------------------------------chHHHHHHHHHHHHhcchH
Confidence 4677888999999998877643 222211 1223446677778888888
Q ss_pred HHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcC
Q 041183 230 LDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGG 288 (760)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 288 (760)
++|-...-.|...+..-|.--+..+...+.-..++.-+.....+.+...|-.+|..+..
T Consensus 409 ~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 409 DEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 88888888887766666655554444334444444444444444555666666666554
No 358
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.33 E-value=39 Score=32.71 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=71.3
Q ss_pred HcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCC-CC-----eeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHh
Q 041183 305 VGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIF-KD-----SVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGY 378 (760)
Q Consensus 305 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 378 (760)
.|.+.+..+...++..-....+++.++..+-++.. ++ ..+-.+.++. +-.-++++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 35555555666666666667788888887766622 21 1111223333 33346778888888888889999999
Q ss_pred hHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q 041183 379 TMASILEAVSNSKSLKQAMQVHSHIIKSG 407 (760)
Q Consensus 379 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 407 (760)
+++.+|+.+.+.+++..|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998888777654
No 359
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.17 E-value=5.5 Score=36.29 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFL 712 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 712 (760)
..+.+|.+.|.+++.+++++.|+....|+.++..-.+.|+.+.|.+.+++..+-..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678888888999999999998999999999999999999999988888776543
No 360
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.97 E-value=1e+02 Score=33.85 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=54.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC
Q 041183 554 YAQHGCYHEVSNLFNKMSKFGVKPDEI---TYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL 630 (760)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 630 (760)
|...+..+.|.+.|++..+ +.|+.. .+..|+.+-.+ .++...++-.-- -.|-..+++.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq~Ig-------------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQQIG-------------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHHHHH-------------HHHHHHhhccch
Confidence 3344556777888888777 677543 34444433221 122222111111 113344567777
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 631 LEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 631 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
.++..++++-. + .+.+-...+|+.+|.+..+.+.++.|+.
T Consensus 360 leklq~YWdV~-------~---y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 360 LEKLQEYWDVA-------T---YFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhHH-------H---hhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 77766665432 1 2334455678888888888888888753
No 361
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.74 E-value=1.4e+02 Score=32.78 Aligned_cols=15 Identities=20% Similarity=-0.064 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHcC
Q 041183 494 LEQGKAIHCLALKAR 508 (760)
Q Consensus 494 ~~~a~~~~~~~~~~~ 508 (760)
...+.++++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 345666666666555
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.55 E-value=6 Score=22.38 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.++..++.++...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46889999999999999999999987653
No 363
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.71 E-value=20 Score=28.06 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q 041183 360 QALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKS 406 (760)
Q Consensus 360 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 406 (760)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555667788888888888888888888888888777644
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.01 E-value=20 Score=36.64 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=49.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh
Q 041183 552 MGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL 631 (760)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 631 (760)
..+...|.++.+.+.+...... +-....+...+++...+.|+++.|...-..|.. ..+ -+.+....-....-..|-+
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~-~ei-e~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLS-NEI-EDEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc-ccc-CChhheeeecccHHHHhHH
Confidence 3344556666666665554432 233445556666666666666666666665554 111 1222222222222334555
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHH
Q 041183 632 EGAKMTIDQMP--IPPDAHIWQSLLS 655 (760)
Q Consensus 632 ~~A~~~~~~~~--~~p~~~~~~~l~~ 655 (760)
+++...+++.- .+|...-|..++.
T Consensus 408 d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 408 DKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHHHhccCChhcccceeeec
Confidence 66666665552 3344444444443
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.11 E-value=1.7e+02 Score=32.63 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=38.8
Q ss_pred HhcCChhHHHHHHHHHhccC---CC------CchhHHHHHHHHHhcCChhHHHHHHH
Q 041183 658 TIYGNIDLGLLAGSKLLELQ---PD------NESTYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
+-.+++..|....+.+.... |+ .+..+...|..+...|+.+.|..+|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999888742 32 36678888888889999999999998
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.04 E-value=24 Score=32.72 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCChh-------HHHHHHHHHhccC--CC----CchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 649 IWQSLLSACTIYGNID-------LGLLAGSKLLELQ--PD----NESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 649 ~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
.+.-+.+.|...|+.+ .|.+.|+++.+.. |. +......+|.+..+.|++++|.+.|.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555666777777754 4555555555533 22 3567888999999999999999999998754
No 367
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.86 E-value=2.8 Score=36.02 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=51.8
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHH
Q 041183 282 LLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQA 361 (760)
Q Consensus 282 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 361 (760)
++..+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566666777777777788777776666777778888888888777777777763321 2233445555555555555
Q ss_pred HHHHHH
Q 041183 362 LDMFCH 367 (760)
Q Consensus 362 ~~~~~~ 367 (760)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555444
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.36 E-value=37 Score=30.70 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCchHHHHHHHHHHhcCCHHHHH
Q 041183 460 AEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALK---ARYDQDIFVESAVIDMYCKCGTIEDAK 533 (760)
Q Consensus 460 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~ 533 (760)
+.|.+.|-++...+.--+ ...-..+..+....|.+++..++-+..+ .+-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666665554333 3333344444446677777777777665 222566777777777777777777664
No 369
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=70.65 E-value=1.4e+02 Score=31.21 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=27.2
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 041183 143 DNVAYTAMVCGYVWNGEFDKSKEVFVEMRSLG 174 (760)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 174 (760)
|+..|..-+..+-+.+.+.+.-.+|..|....
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H 135 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH 135 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 77888888887777788999999999998765
No 370
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.55 E-value=88 Score=28.73 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhhhh-cCCCCChhHHHHHHHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMSDL-HGLIPQLEHYACIVDL 624 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~ 624 (760)
.+..++.+.+.+...+++...++-.+ -+| |..+-..++..++-.|+|++|..-++.+.+- ....+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456667778888888888877666 356 4566667778888999999998777766550 1223335666666653
Q ss_pred hhhcCChHHHH-HHHHhC--C---CCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHhccCCC
Q 041183 625 LGRVGLLEGAK-MTIDQM--P---IPPDAHIWQSLLSACTI--YGNIDLGLLAGSKLLELQPD 679 (760)
Q Consensus 625 ~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~p~ 679 (760)
- .+. ++|..- + -.|.+.-...|..+... .|.-+.+..+-+.+++..|.
T Consensus 82 e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 82 E-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred H-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 2 222 233322 1 22333333444444432 23455567777778877664
No 371
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.41 E-value=99 Score=29.30 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=68.2
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 631 LEGAKMTIDQM--PIPPDAHIWQSLLSACTIYGNID-LGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 631 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
..+-++++.++ ..+.+-..|..--......|++. .-+++.+.++..+..|..+|.+.-+++..-+.|+.-+.+-.+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444 24556667766555556667776 7788889999988889999999999999999999999999999
Q ss_pred HhCCCCCCCcee
Q 041183 708 KEKFLCKEPGYS 719 (760)
Q Consensus 708 ~~~~~~~~~~~~ 719 (760)
.+..+....+|.
T Consensus 174 le~Di~NNSAWN 185 (318)
T KOG0530|consen 174 LEEDIRNNSAWN 185 (318)
T ss_pred HHHhhhccchhh
Confidence 999988888753
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.73 E-value=1.1e+02 Score=34.90 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 445 HINALASVLVYASCHAEALELYRTIWG 471 (760)
Q Consensus 445 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 471 (760)
-|..|+..|...|..++|+++|++..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 577888888888888888888888866
No 373
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.53 E-value=13 Score=29.08 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHhcCChhHHHHHHHHHhccCCC----C-----chhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 657 CTIYGNIDLGLLAGSKLLELQPD----N-----ESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 657 ~~~~~~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
..+.||+..|.+.+.+..+.... . ..+...++.+....|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678888888888888774321 1 24556678888899999999999998765
No 374
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.44 E-value=1.9e+02 Score=32.26 Aligned_cols=82 Identities=11% Similarity=-0.145 Sum_probs=48.9
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-C--CCchhHHHHHHHHHhcCChh
Q 041183 622 VDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ-P--DNESTYVLLSNLYASAGMWN 698 (760)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~~ 698 (760)
+..+...|+..+|...+..+....+......+.......|..+.++.........+ + .-|..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44556678888887777666333555566666666677888888877766543311 0 12334555555566555666
Q ss_pred HHHHH
Q 041183 699 DVGKL 703 (760)
Q Consensus 699 ~A~~~ 703 (760)
.++-+
T Consensus 494 ~~lv~ 498 (644)
T PRK11619 494 QSYAM 498 (644)
T ss_pred HHHHH
Confidence 65543
No 375
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.56 E-value=1.2e+02 Score=29.41 Aligned_cols=57 Identities=7% Similarity=0.041 Sum_probs=31.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcccHHHHHHHHHhcCChhHHHH
Q 041183 408 FLLDDSMISCLITTYGKCNALNESKRVLSEIDK-----KNAVHINALASVLVYASCHAEALE 464 (760)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~ 464 (760)
-.++..+...+++.+++.+++..-.++++.... .|..+|..+|......|+..-..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 344555555555556666666655555554432 255566666666666666543333
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.49 E-value=1e+02 Score=28.65 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 041183 518 AVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVRE 597 (760)
Q Consensus 518 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 597 (760)
.-++.|.+.-++.-|-...+++.+|=. +..++ .-|.+..+..-..++.+-....+++-+...+..++ +...||+.+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQ-SRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQ-SRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHH-hhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 345556666666666666665554411 11111 12333333333334444444455555555555444 567899999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 598 ARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 598 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
|+..++.....+|.... ..+|+-. ..|.+.....++..|.+ +++++|.+.+.+.+++.
T Consensus 211 alNnLQst~~g~g~Vn~--------------------enVfKv~-d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVNQ--------------------ENVFKVC-DEPHPLLVKKMLQACLK-RNIDEALKILAELWKLG 268 (333)
T ss_pred HHHHHHHHhccccccch--------------------hhhhhcc-CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcC
Confidence 98888877663222211 1222222 36888888888777654 78999999999999987
Q ss_pred CCCchhHHHHHHHHHhcC
Q 041183 678 PDNESTYVLLSNLYASAG 695 (760)
Q Consensus 678 p~~~~~~~~l~~~~~~~g 695 (760)
-....+...+.+++....
T Consensus 269 ysp~Dii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 269 YSPEDIITTLFRVVKNMD 286 (333)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 544455555555554443
No 377
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.88 E-value=78 Score=30.85 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=29.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhh
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPDE---ITYLAVLTSCCHAGLVREARTYLSCMS 606 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (760)
|..+-.+.|+..+|.+.|+.+.+. .|-. ..-..|+.+|....-+.+...++-+.-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444567777777777766553 2321 122345666666555555555554443
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.10 E-value=69 Score=30.64 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=48.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh----
Q 041183 450 ASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCK---- 525 (760)
Q Consensus 450 ~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 525 (760)
|.+++..+++.+++...-+--+.--+.........|-.|.+.+.+..+.++-.......-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4556666666666554444333222233344445555567777777777777776663323334446666665543
Q ss_pred -cCCHHHHHHHH
Q 041183 526 -CGTIEDAKRAF 536 (760)
Q Consensus 526 -~~~~~~A~~~~ 536 (760)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666665
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.40 E-value=16 Score=27.05 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=26.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 041183 556 QHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSCCHAGLVREARTY 601 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 601 (760)
...+.++|+..|....+.-..|.. .++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666654333321 4556666666666666665543
No 380
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.39 E-value=1.6e+02 Score=30.09 Aligned_cols=52 Identities=15% Similarity=0.034 Sum_probs=28.1
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHhh-hcCChHHHHHHHHhC
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIP--QLEHYACIVDLLG-RVGLLEGAKMTIDQM 641 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 641 (760)
..+.+.|.+..|.++.+.+.. +.| |+.....+|+.|+ +.++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 345566666666666666655 333 3444444555553 555565555555543
No 381
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.10 E-value=1.3e+02 Score=34.52 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=65.9
Q ss_pred HhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhc--------CChhHHHHH--HHHHhc-------cCCC----
Q 041183 624 LLGRVGLLEGAKMTIDQMP---IPPDAHIWQSLLSACTIY--------GNIDLGLLA--GSKLLE-------LQPD---- 679 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~~~~-------~~p~---- 679 (760)
.|......+-++.+++.+. ..++....+.++..|... ++.+++.+. .++... ..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 3455666777777887773 344555566666655432 122233333 222221 2232
Q ss_pred ---CchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEcCCCCCCChHHHHHHHHHHHHH
Q 041183 680 ---NESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYTHHFYAGDSSHSQSKEIYKELIKLYEH 753 (760)
Q Consensus 680 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (760)
....|...+..+.+.|+.++|+.++-...+.--.-..-+.+ ++. +.+..+++|.++-+.|..
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~---------~y~---~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLP---------QYE---SDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHH---------hcc---CCCcccHHHHHHHHHHhc
Confidence 35677778888889999999999877665421100011111 111 344478888888888754
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.74 E-value=47 Score=25.26 Aligned_cols=63 Identities=6% Similarity=0.011 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHH
Q 041183 499 AIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEV 563 (760)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 563 (760)
+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .....|...+.++...|..+-|
T Consensus 23 ~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 44445555443 233333332222224566777777777776 6666667777777666655444
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.28 E-value=41 Score=27.57 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 041183 562 EVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIV 622 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 622 (760)
+..+-++.+..-.+.|+.......++||.+.+|+..|.++|+.++. .+.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 3445566667777899999999999999999999999999999987 3444444565554
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.74 E-value=94 Score=32.00 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--hccCcHHHHHHHHHHhhh
Q 041183 555 AQHGCYHEVSNLFNKMSKFGVKPDEI--TYLAVLTSC--CHAGLVREARTYLSCMSD 607 (760)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 607 (760)
...+++..|.++|+.+... +.++.. .+..+..+| ...-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3566777777777777665 444333 333333433 345566677777776655
No 385
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.56 E-value=2.4e+02 Score=31.23 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh
Q 041183 554 YAQHGCYHEVSNLFNKMSKFGVKPD--EITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL 631 (760)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 631 (760)
+.--|+.++|-.+.++|.... .|- ......+..+|+-.|+.....+++.-... ...-|+.-+..+.-++.-..++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecCh
Confidence 334455556666666665432 221 11222334456666666655555555443 2334444444444445555555
Q ss_pred HHHHHHHHhC
Q 041183 632 EGAKMTIDQM 641 (760)
Q Consensus 632 ~~A~~~~~~~ 641 (760)
+....+++-+
T Consensus 588 ~~~~s~V~lL 597 (929)
T KOG2062|consen 588 EQLPSTVSLL 597 (929)
T ss_pred hhchHHHHHH
Confidence 5555555544
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.56 E-value=2.7e+02 Score=31.71 Aligned_cols=24 Identities=13% Similarity=0.002 Sum_probs=15.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhh
Q 041183 584 AVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 584 ~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
.|+......|+++.|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455566667777777766666654
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.20 E-value=53 Score=24.97 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHH
Q 041183 397 MQVHSHIIKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEA 462 (760)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 462 (760)
.++++.+...|+- +......+-.+-...|+.+.|.++++.++ +.+..+..++.++-..|...-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555533 33333333332234577777777777777 6777777777777666655444
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.19 E-value=2e+02 Score=30.10 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCch--hhhHHHHHHHhcCChhhHHHHhhhcCCC----CceeHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 041183 100 VHGVCLKLGFSSRVY--LVSGFIENYAKSGEIVSAEMCFRDCLDL----DNVAYTAMVCGYVWNGEFDKSKEVFVEMRSL 173 (760)
Q Consensus 100 ~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 173 (760)
+.+.+.+.|..|+.. ...+-+...+..|+.+.+..+++..... +.... +.+...+..|+. ++++.+.+.
T Consensus 50 ~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~ 124 (413)
T PHA02875 50 AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIAR 124 (413)
T ss_pred HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhC
Confidence 445555555544322 1122344455667777766666543321 11112 233344455554 344445555
Q ss_pred CCCCC
Q 041183 174 GLELN 178 (760)
Q Consensus 174 g~~p~ 178 (760)
|..|+
T Consensus 125 gad~~ 129 (413)
T PHA02875 125 GADPD 129 (413)
T ss_pred CCCCC
Confidence 65554
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.85 E-value=2.1e+02 Score=30.19 Aligned_cols=178 Identities=7% Similarity=-0.037 Sum_probs=110.3
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChHhHHHHH
Q 041183 475 EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKIC---RDSLAGWNAMM 551 (760)
Q Consensus 475 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 551 (760)
..|.....+++..+..+..+..++.+..++...| -+-..|..++++|... ..+.-..+++++. -.|++.-..|+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4466677778888888888888888888888866 4566777788888777 5556666666443 33444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc--cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh
Q 041183 552 MGYAQHGCYHEVSNLFNKMSKFGVKPDE--ITYLAVLTSCCH--AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR 627 (760)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 627 (760)
..|-+ ++.+.+...|.++... +-|.. ....-+-.-+.. ..+.+....+...+.++.|...-...+.-+-.-|..
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 55544 7777777777777665 33311 111112222222 456677777777777655655555666666677777
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041183 628 VGLLEGAKMTIDQMP--IPPDAHIWQSLLSAC 657 (760)
Q Consensus 628 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 657 (760)
..++.+|++++..+- ...|..+-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 777777777777662 334444444444443
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.73 E-value=51 Score=31.39 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCH
Q 041183 150 MVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQK 229 (760)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (760)
+..-..+..++++|+..+.+....|+..|..+. .....+...+...|.+.|+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~---------------------------nEqE~tvlel~~lyv~~g~~ 61 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL---------------------------NEQEATVLELFKLYVSKGDY 61 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh---------------------------hHHHHHHHHHHHHHHhcCCc
Confidence 344566788999999999999999998887776 33334446677778888877
Q ss_pred HHHHHHhc
Q 041183 230 LDAVKMFD 237 (760)
Q Consensus 230 ~~A~~~~~ 237 (760)
..-.+...
T Consensus 62 ~~l~~~i~ 69 (421)
T COG5159 62 CSLGDTIT 69 (421)
T ss_pred chHHHHHH
Confidence 66555443
No 391
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.43 E-value=70 Score=24.68 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CchhHHHHHHHHHhcCChhH
Q 041183 644 PPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPD--NESTYVLLSNLYASAGMWND 699 (760)
Q Consensus 644 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~ 699 (760)
+.|......+...+...|+++.|++.+-.+++.+|+ +..+-..++.++...|.-+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 456677788888899999999999999999997765 46777778888887777543
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.27 E-value=1.9e+02 Score=29.55 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=46.5
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHhccCCC-CchhHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 041183 646 DAHIWQSL---LSACTIYGNIDLGLLAGSKLLELQPD-NESTYVLLSNLYA-SAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 646 ~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 709 (760)
|...|.++ +..+.+.|-+..|.+.-+-++.++|. ||-.....+..|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45555544 45677889999999999999999998 7777776666655 66777767777766544
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.77 E-value=14 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHhccCCCCchhHHHHHH
Q 041183 661 GNIDLGLLAGSKLLELQPDNESTYVLLSN 689 (760)
Q Consensus 661 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 689 (760)
|+.+.|..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788888999999888877777776654
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.57 E-value=31 Score=35.31 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=23.4
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 680 NESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 680 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
...++..+|-+|...+++.+|.+.|....
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888887754
No 395
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=61.20 E-value=3.3e+02 Score=31.95 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHC
Q 041183 348 MIAGYSENGFFNQALDMFCHMLEF 371 (760)
Q Consensus 348 li~~~~~~g~~~~a~~~~~~m~~~ 371 (760)
+=+++.....++.|+..|++....
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~ 504 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES 504 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc
Confidence 346777778888888888887664
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.07 E-value=17 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=18.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 041183 150 MVCGYVWNGEFDKSKEVFVEMRSLG 174 (760)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g 174 (760)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777778888888887777554
No 397
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.54 E-value=1.4e+02 Score=31.76 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--ChHh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 517 SAVIDMYCKCGTIEDAKRAFRKICRD--SLAG---WNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 517 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
..++.-|.+.+++++|..++..|.-. .... .+.++..+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45677889999999999999888522 2222 33344444444433444444444444
No 398
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.47 E-value=2.3e+02 Score=29.65 Aligned_cols=320 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred hhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHHHHhcC----------
Q 041183 268 RFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARSIFDYL---------- 337 (760)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------- 337 (760)
+..+..-........-..--..+.++...+++..+...|.......+|.-+..|.+.|....-..+=+-.
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred -------CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCC
Q 041183 338 -------IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLL 410 (760)
Q Consensus 338 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 410 (760)
...+...+....-+|.....+..|+++....... +.|=...+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~------------------------------ 137 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSS------------------------------ 137 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHH------------------------------
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 041183 411 DDSMISCLITTYGKCNALNESKRVLSEIDKK------NAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIV 484 (760)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 484 (760)
-..+.......+......++|+.+++-+.+. ....-+.-.....+.+....|..-+-.. .|.......-
T Consensus 138 aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a-----~~k~~~~~yk 212 (696)
T KOG2471|consen 138 AASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTA-----DLKLELQLYK 212 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhh-----ccchhhhHhh
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCChH---hHHHHHH
Q 041183 485 LKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKI---------CRDSLA---GWNAMMM 552 (760)
Q Consensus 485 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~~~~---~~~~l~~ 552 (760)
+.++....++..+..-.+...... ..++...-.--+.+.-.|++.+|.+++... +.|... .||.|.-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Q ss_pred HHHHcCCHHHHHHHHHHHHH-------CCCCCCHHH----------HHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCCh
Q 041183 553 GYAQHGCYHEVSNLFNKMSK-------FGVKPDEIT----------YLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQL 615 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 615 (760)
.+.+.|.+..+..+|.+... .|++|.... .....-.+...|++-.|.+.|..... -+..++
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vfh~nP 369 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VFHRNP 369 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HHhcCc
Q ss_pred hHHHHHHHHhh
Q 041183 616 EHYACIVDLLG 626 (760)
Q Consensus 616 ~~~~~l~~~~~ 626 (760)
..|-.|..+|.
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
No 399
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=59.43 E-value=28 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=8.1
Q ss_pred HHHHHHHhcCChhHHHHH
Q 041183 652 SLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~ 669 (760)
.+...+...|++++|..+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444445555555555
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.37 E-value=3.1e+02 Score=31.18 Aligned_cols=219 Identities=13% Similarity=0.022 Sum_probs=115.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCch-------HHHHH-HHHHHhcCCHHHHHHHHHhcC--------CCChHhHHHHHH
Q 041183 489 AAMTDLEQGKAIHCLALKARYDQDIF-------VESAV-IDMYCKCGTIEDAKRAFRKIC--------RDSLAGWNAMMM 552 (760)
Q Consensus 489 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~ 552 (760)
....++++|..+..++...-..|+.. .++.+ .......|+++.|.++-+... ...+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667778877777766533232211 22222 222345678888887776542 234556777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhccCcHH--HHHHHHHHhhhhcCCC-----CChhHHHH
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVL-----TSCCHAGLVR--EARTYLSCMSDLHGLI-----PQLEHYAC 620 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-----~~~~~~g~~~--~A~~~~~~~~~~~~~~-----~~~~~~~~ 620 (760)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|... .....+.......... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999998887766532223333332222 3466677433 3333444443311111 11234444
Q ss_pred HHHHhhhc-CChHHHHHHHHhCC-CCCCHH--HH--HHHHHHHHhcCChhHHHHHHHHHhccCCCC-chhH----HH--H
Q 041183 621 IVDLLGRV-GLLEGAKMTIDQMP-IPPDAH--IW--QSLLSACTIYGNIDLGLLAGSKLLELQPDN-ESTY----VL--L 687 (760)
Q Consensus 621 l~~~~~~~-g~~~~A~~~~~~~~-~~p~~~--~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~----~~--l 687 (760)
+..++.+. +...+|..-++-.. ..|.+. .. ..|+......||.+.|...+.++..+--.+ +.++ .. .
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 11222222222111 222222 22 256667788999999999999988853211 1211 12 2
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 041183 688 SNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 688 ~~~~~~~g~~~~A~~~~~~~ 707 (760)
...-..+|+.++|...+.+-
T Consensus 666 ~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 666 LILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhcccCCHHHHHHHHHhc
Confidence 22334668888888777653
No 401
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.14 E-value=83 Score=26.86 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=46.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHhhcChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCc-chH
Q 041183 216 NNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAAACDGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERI-LRA 294 (760)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~ 294 (760)
.|.++.-....+++...+.+++.+.--+... +. -..+..+|..++.+.++... .-.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~----~~-------------------~~~~~ssf~~if~SlsnSsSaK~~ 98 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDN----II-------------------GWLDNSSFHIIFKSLSNSSSAKLT 98 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHH----Hh-------------------hhcccchHHHHHHHHccChHHHHH
Confidence 3777777777888888888877763210000 00 02334455555555554444 334
Q ss_pred HHHHHHHHHHHcCCCCchhHhHHHHhhhcC
Q 041183 295 GKQIQAFCYKVGFMEVVSIGNALISMYGKC 324 (760)
Q Consensus 295 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 324 (760)
+..++..+.+.+.+.++.-|..++.++.+.
T Consensus 99 ~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 99 SLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 455555555555555555555555554443
No 402
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.10 E-value=91 Score=24.86 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 493 DLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
..++|..|.+-+...+. ....+--+-+..+.+.|++++|...=.....||..+|-+|.. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45556666655555432 122222233445566777777744434445666666665543 456666777766766665
Q ss_pred CC
Q 041183 573 FG 574 (760)
Q Consensus 573 ~g 574 (760)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 403
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.04 E-value=21 Score=26.43 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=32.8
Q ss_pred hcCChhHHHHHHHHHhccCCCCchhHH---HHHHHHHhcCChhHHHHH
Q 041183 659 IYGNIDLGLLAGSKLLELQPDNESTYV---LLSNLYASAGMWNDVGKL 703 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 703 (760)
...+.+.|+..++++++..++.+.-+. .|+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888887665554444 455677888888887776
No 404
>PRK10941 hypothetical protein; Provisional
Probab=57.93 E-value=70 Score=30.91 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=43.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHH
Q 041183 619 ACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVL 686 (760)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 686 (760)
+.|-.+|.+.++++.|....+.+- .+.++.-+.--+-.|.+.|.+..|..-++..++..|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 344555666666666666666662 33445556666666777777777777777777777766655443
No 405
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.18 E-value=3.9e+02 Score=31.56 Aligned_cols=183 Identities=11% Similarity=-0.036 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 041183 511 QDIFVESAVIDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCC 590 (760)
Q Consensus 511 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 590 (760)
+|..+-...++++...+.. ....+...+..+|...-...+.++.+.+..+. +..+. -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 3444444444444433211 11233344455555555555555554443322 11121 2344444444555555
Q ss_pred ccCcHHH-HHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 041183 591 HAGLVRE-ARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 591 ~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 669 (760)
..+..+. +...+..+.. .++...-...+.++.+.|..+.+...+..+-..++...-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5544332 2333333332 244555566666666666654443333333234555555555555555544 334444
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041183 670 GSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 670 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
+..+++ +| +...-...+.++.+.+.-..+...+....
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 444443 23 44455555555555432334555554443
No 406
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.57 E-value=51 Score=28.03 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChh
Q 041183 632 EGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWN 698 (760)
Q Consensus 632 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 698 (760)
+.|.++.+-|. ...............|++.-|.++.+.++..+|+|..+-...+.+|.+.|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45666666664 23444445566778999999999999999999999999999988888766543
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.43 E-value=43 Score=22.11 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 041183 151 VCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLTAVLG 187 (760)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 187 (760)
+....+.|-..++..++++|.+.|+..+...|..+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445678889999999999999999888887766554
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.39 E-value=2e+02 Score=27.80 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-DEITYLAVLTSCCHAGLVREARTYLSCMS 606 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 606 (760)
++.....|...|.+.+|.++-++... +.| +...+..|+..+...||--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44555677778888888888877777 555 55666667777777777666655555544
No 409
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=55.12 E-value=1.2e+02 Score=24.86 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhc-------cCCCC----chhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLE-------LQPDN----ESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
..+..|..++...|++++++...++++. +..+. ..+.+..+.++...|+.++|+..|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444555566666666655555555543 44432 334456677888899999999988863
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.82 E-value=1.5e+02 Score=28.44 Aligned_cols=83 Identities=8% Similarity=-0.048 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHhc----CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----h
Q 041183 520 IDMYCKCGTIEDAKRAFRKI----CRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSC-----C 590 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-----~ 590 (760)
|++++..+++.++....-.- .+--......-|-.|.+.+....+.++-..-...--+-+...|..+++.| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 55666666666655443221 11122233444445555666555555555444321111223344444332 3
Q ss_pred ccCcHHHHHHHH
Q 041183 591 HAGLVREARTYL 602 (760)
Q Consensus 591 ~~g~~~~A~~~~ 602 (760)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 345556655554
No 411
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.24 E-value=2.2e+02 Score=27.71 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=31.0
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Q 041183 475 EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKA-RYDQDIFVESAVIDMYCKCGTIEDAKRAFR 537 (760)
Q Consensus 475 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 537 (760)
.++..+...++..++..+++.+-.+++...... +...|...|..+++.....|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 444444555555555555555555555444443 333445555555555555555444444443
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=2.1e+02 Score=27.51 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=35.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCcHHHHHHHH
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKPDEI-------TYLAVLTSCCHAGLVREARTYL 602 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~ 602 (760)
..-..+.+++++|+..+.+....|+..|.. +...+...|...|++..-.+..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344566788889999999988888766543 3445566677777765544433
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.72 E-value=2.9e+02 Score=28.97 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=54.2
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChHhHHHHH
Q 041183 475 EVNGSTFSIVLKACAAMTDLEQGKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAKRAFRKI---CRDSLAGWNAMM 551 (760)
Q Consensus 475 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~ 551 (760)
..+......++..+ .|+...+..+++.+...+...+. +...+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555555443 67888887777776543211111 1112222211 111112233344
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 041183 552 MGYAQ---HGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAG 593 (760)
Q Consensus 552 ~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 593 (760)
.++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 44444 4788888889999998888887665555555544444
No 414
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.42 E-value=26 Score=33.54 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=39.1
Q ss_pred hhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 625 LGRVGLLEGAKMTIDQM-P-IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 625 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
.-+.|+.++|..+|+.+ . .+.++.+..-+......+++.-+|.++|-+++.+.|.+..++...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 34567777777777765 2 233444555555555556677777777777777777666555443
No 415
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=53.18 E-value=45 Score=31.76 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 651 QSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 651 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
..+=.++...++++.|....++.+.++|+++.-..-.|.+|.+.|.+.-|+.-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344456788899999999999999999999999999999999999999999988876544
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.13 E-value=2.2e+02 Score=27.46 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH-HHHHHHH
Q 041183 614 QLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYV-LLSNLYA 692 (760)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~ 692 (760)
++.....++..|.+.|++.+|...|-... .|+...+..++......|... +...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~---------------e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPS---------------EADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS-----------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCc---------------chhHHHHHHHHHHH
Confidence 57788889999999999999988876553 233333322343333333333 333333 3334577
Q ss_pred hcCChhHHHHHHHHHHhC
Q 041183 693 SAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 693 ~~g~~~~A~~~~~~~~~~ 710 (760)
-.|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 789999999988887765
No 417
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.10 E-value=1.1e+02 Score=24.65 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 546 GWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 546 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887776
No 418
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.61 E-value=2.1e+02 Score=27.09 Aligned_cols=161 Identities=13% Similarity=0.105 Sum_probs=81.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhc
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCC-HAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRV 628 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 628 (760)
++...-+.|+++++...++++.+.+...+..--+.|..+|- ..|....+++++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 55666778888888888888888765556555555555542 234445566666665542211111 2222233222111
Q ss_pred ------CChHHHHHHHHhCC----CCCCHHHHHHHHHH-H----Hhc--C-----ChhHHHHHHHHHhc-----cCCCCc
Q 041183 629 ------GLLEGAKMTIDQMP----IPPDAHIWQSLLSA-C----TIY--G-----NIDLGLLAGSKLLE-----LQPDNE 681 (760)
Q Consensus 629 ------g~~~~A~~~~~~~~----~~p~~~~~~~l~~~-~----~~~--~-----~~~~A~~~~~~~~~-----~~p~~~ 681 (760)
.--.+.+.+++..- ..+....|..-+.+ | +.. | -.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 01234444554431 12222222222111 1 111 1 23678888888877 456565
Q ss_pred hhHHHH----HHHHHhcCChhHHHHHHHHHHhCC
Q 041183 682 STYVLL----SNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 682 ~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
.-+-.. +-.|...|+.++|.++-++..+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 533322 234567899999999888876643
No 419
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.57 E-value=24 Score=34.08 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCce-eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 041183 142 LDNV-AYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELNEFSLT 183 (760)
Q Consensus 142 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 183 (760)
+|.. -|+.-|....+.||+++|+.++++.++.|+.--..||-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3443 57799999999999999999999999999876666663
No 420
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=52.10 E-value=2.5e+02 Score=27.83 Aligned_cols=122 Identities=8% Similarity=-0.001 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------ccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh
Q 041183 558 GCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCC------HAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL 631 (760)
Q Consensus 558 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 631 (760)
+-++++..++++....+. |........|.++- ..-+|.....+|+.+.. ..|++.+--.=..+..+..-.
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhH
Confidence 345677788888887764 88887777776653 24568888888888876 566654333333445555556
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchh
Q 041183 632 EGAKMTIDQMPIPPD----AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNEST 683 (760)
Q Consensus 632 ~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 683 (760)
+.+...++.+...|. ...+..-...+.+.|+.++|-..|++++.+.++...-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 777777776643322 2223334555788999999999999999998854443
No 421
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.03 E-value=93 Score=26.11 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHhhhcCC---hHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCch
Q 041183 612 IPQLEHYACIVDLLGRVGL---LEGAKMTIDQMP--IPPD--AHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNES 682 (760)
Q Consensus 612 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 682 (760)
.++..+--.+..++.+..+ ..+.+.++++.- .+|+ .....-|.-++.+.++++.+.++.+..++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3444444444555544443 333444444441 1222 223344555678888999999999988888886543
No 422
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.70 E-value=2.4e+02 Score=28.77 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=43.9
Q ss_pred HHhccCcHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCC--HHHH----HHHHHHH
Q 041183 588 SCCHAGLVREARTYLSCMSDLHGLIPQ----LEHYACIVDLLGRVGLLEGAKMTIDQMPIPPD--AHIW----QSLLSAC 657 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~----~~l~~~~ 657 (760)
++...|+...-...+........+..| ....|.|+..|...+.++.|.++..+...+.. ..-| .-+...-
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk 257 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK 257 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH
Confidence 344555555555554444432223323 23345555566666666666666666531110 0011 1122223
Q ss_pred HhcCChhHHHHHHHHHhccCC
Q 041183 658 TIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 658 ~~~~~~~~A~~~~~~~~~~~p 678 (760)
.-.+++..|.+.+-.+....|
T Consensus 258 aiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 258 AIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HhhcchhHHHHHHHHHHHhCc
Confidence 345566666666666666655
No 423
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.26 E-value=1.3e+02 Score=32.09 Aligned_cols=133 Identities=13% Similarity=0.016 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhh-hcCChHHHHHHHHhC-CCCCCH--HH
Q 041183 576 KPDEITYLAVLTSCCH--AGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLG-RVGLLEGAKMTIDQM-PIPPDA--HI 649 (760)
Q Consensus 576 ~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p~~--~~ 649 (760)
-|+..+...++.-... ....+.|-.++..|.. ...|--.+.+ +...|. -.|+...|..-+..+ ...|.. ..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 4566665555433322 1223455566666654 3444333333 334443 578999999888876 233322 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
...|...+.+.|-.-.|-.++.+.+.+.-..|-++..++++|....+.+.|++.|+...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 45677778888888899999999999888789999999999999999999999999877654
No 424
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.98 E-value=65 Score=31.61 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=66.2
Q ss_pred HHHHhhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 041183 621 IVDLLGRVGLLEGAKMTIDQMP----IPP--DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 694 (760)
=+.-|.+..++..|...|.+.- -.| +...|+.-..+-...|++..|+.--.+++.++|.+..+|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 3445566667777777776551 223 3445666666667789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHH
Q 041183 695 GMWNDVGKLRKEM 707 (760)
Q Consensus 695 g~~~~A~~~~~~~ 707 (760)
.++++|....++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 9988888777754
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.92 E-value=49 Score=30.13 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 041183 643 IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 643 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 678 (760)
..|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 467777777777777777777777777777777777
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.62 E-value=51 Score=30.03 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=18.1
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 611 LIPQLEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 611 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
..|++.+|..++.++...|+.++|.+...++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555566666666665555555
No 427
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.42 E-value=1.1e+02 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 444 VHINALASVLVYASCHAEALELYRTIWG 471 (760)
Q Consensus 444 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 471 (760)
.-|..|+..|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578888888899999999999988876
No 428
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.74 E-value=2.1e+02 Score=26.05 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 041183 545 AGWNAMMMGYAQHGCYHEVSNLFNKMSKF 573 (760)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 573 (760)
...+.++..+...|+++.|.+.|.-+...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 35677888888889999999999888764
No 429
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.74 E-value=2.7e+02 Score=27.26 Aligned_cols=76 Identities=11% Similarity=-0.140 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-------------
Q 041183 633 GAKMTIDQMPIPPDAHIWQSLLSACTI----YGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAG------------- 695 (760)
Q Consensus 633 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 695 (760)
.|...+.++...-++.....+...|.. ..|.++|...|+++-+... ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555554222233444444433322 2366677777777777665 45555555 555444
Q ss_pred --ChhHHHHHHHHHHhCC
Q 041183 696 --MWNDVGKLRKEMKEKF 711 (760)
Q Consensus 696 --~~~~A~~~~~~~~~~~ 711 (760)
+...|...+...-..+
T Consensus 250 ~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 250 EEDKKQALEWLQKACELG 267 (292)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 5666666666665544
No 430
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.25 E-value=32 Score=31.65 Aligned_cols=55 Identities=27% Similarity=0.270 Sum_probs=33.7
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 626 GRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 626 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
.+.|+.+.|.+++.+.- .+.....|--+...-.+.|+++.|.+.|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34555566666665552 23345566666666667777777777777777777653
No 431
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.55 E-value=1.5e+02 Score=24.76 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=27.5
Q ss_pred HHHHHHHHHhc--cCCCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 041183 665 LGLLAGSKLLE--LQPDNESTYVLLSNLYASAGMWNDVGKLRKE 706 (760)
Q Consensus 665 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 706 (760)
.+.++|+.+.. ++-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666665 3445666777777777777777777777764
No 432
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=47.40 E-value=1.8e+02 Score=34.51 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=100.6
Q ss_pred HHhccCcHHHHHH------HHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCC-CHHHHH
Q 041183 588 SCCHAGLVREART------YLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMP---------IPP-DAHIWQ 651 (760)
Q Consensus 588 ~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p-~~~~~~ 651 (760)
.+...|.+.+|.+ ++..... .-.++....|..|...+.+.|+.++|+.+-.+.. ..| +...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~-~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMG-VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhh-hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3444566666655 5553332 1234456888999999999999999998877651 233 344566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcc--------CCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEE
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLEL--------QPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHV 723 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 723 (760)
.+.-.+...++...|...+.++..+ .|+-..+...+..++...++++.|.++++...+..- .
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~--~-------- 1089 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK--K-------- 1089 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh--h--------
Confidence 6666667777889999998888873 355566667788788888999999999999876210 0
Q ss_pred CCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 041183 724 GGYTHHFYAGDSSHSQSKEIYKELIKLYEHMVAT 757 (760)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (760)
.. .-.+-+-...+..++|++.-+|+.
T Consensus 1090 -------v~-g~~~l~~~~~~~~~a~l~~s~~df 1115 (1236)
T KOG1839|consen 1090 -------VL-GPKELETALSYHALARLFESMKDF 1115 (1236)
T ss_pred -------hc-CccchhhhhHHHHHHHHHhhhHHH
Confidence 00 011234455666677777766664
No 433
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=47.25 E-value=58 Score=29.52 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCE
Q 041183 648 HIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLS-NLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGY 726 (760)
Q Consensus 648 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (760)
.....++..|...||++.|-++|--+++..+-|......+| .++.+.+.-....++++.|...............-...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 45667788888899999999999998887665655555555 66666666666668888776543322222111111223
Q ss_pred EEEEEcCCCCCCC
Q 041183 727 THHFYAGDSSHSQ 739 (760)
Q Consensus 727 ~~~~~~~~~~~~~ 739 (760)
...|-.|.+.|-.
T Consensus 122 ~pvfrsGs~t~tp 134 (199)
T PF04090_consen 122 APVFRSGSRTHTP 134 (199)
T ss_pred cccccCCCcccch
Confidence 4556677777744
No 434
>PHA03100 ankyrin repeat protein; Provisional
Probab=46.25 E-value=4e+02 Score=28.49 Aligned_cols=21 Identities=10% Similarity=-0.124 Sum_probs=12.3
Q ss_pred HHhHhcCCHHHHHHHhccCCC
Q 041183 221 NLYVRCGQKLDAVKMFDEITE 241 (760)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~ 241 (760)
...+..|+.+-+..+++.-..
T Consensus 255 ~~A~~~~~~~iv~~Ll~~gad 275 (480)
T PHA03100 255 HYAVYNNNPEFVKYLLDLGAN 275 (480)
T ss_pred HHHHHcCCHHHHHHHHHcCCC
Confidence 344566777766666665443
No 435
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.88 E-value=28 Score=34.09 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=73.3
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHH
Q 041183 591 HAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAH-IWQSLLSACTIYGNIDLGLL 668 (760)
Q Consensus 591 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~A~~ 668 (760)
..|.++.|++.|....+ --++....|..-.+++.+.+++..|++=+... .+.||.. -|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45667777777777766 23444566666667777777777777766655 3455433 34444555666788888888
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 669 AGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 669 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.+..+.+++- +..+-..+-.+.-+.+..++-...+++.++
T Consensus 204 dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 8888888775 444444555555556666555555555443
No 436
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.84 E-value=2.6e+02 Score=26.20 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=9.0
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 041183 556 QHGCYHEVSNLFNKMSKF 573 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~ 573 (760)
..+++.+|+.+|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.25 E-value=99 Score=27.52 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=8.7
Q ss_pred HhhhcCChHHHHHHHHhC
Q 041183 624 LLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 624 ~~~~~g~~~~A~~~~~~~ 641 (760)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 344445555555555444
No 438
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.95 E-value=66 Score=25.03 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccC
Q 041183 651 QSLLSACTIYGNIDLGLLAGSKLLELQ 677 (760)
Q Consensus 651 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 677 (760)
..+.......|++++|...+++++++.
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555677899999999999988853
No 439
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.48 E-value=4.6e+02 Score=29.22 Aligned_cols=191 Identities=13% Similarity=-0.006 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHcCCCCC---chHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChH----------hHHHHHHHHHHcCCHH
Q 041183 496 QGKAIHCLALKARYDQD---IFVESAVIDMYCKCGTIEDAKRAFRKIC-RDSLA----------GWNAMMMGYAQHGCYH 561 (760)
Q Consensus 496 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~----------~~~~l~~~~~~~~~~~ 561 (760)
+-..++.+|+..--.|+ +.+...++-.|....+++...++.+.+. -||.. .|.-.+.---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33445566655322333 4455556666667777777777777664 22221 1221222222346777
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHH-----HHH--HHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCC-h
Q 041183 562 EVSNLFNKMSKF-G-VKPDEITYL-----AVL--TSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGL-L 631 (760)
Q Consensus 562 ~a~~~~~~m~~~-g-~~p~~~~~~-----~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 631 (760)
+|+.+.-.+.+. | +.||..+.. -+. +.|...+..+.|.+.|++..+ +.|+...=-.+...+...|+ +
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhc
Confidence 787776666553 2 566754432 221 335566777888888888866 66765433333333333332 2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041183 632 EGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEK 710 (760)
Q Consensus 632 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 710 (760)
+...++- .+. ..|-..+.+.|..+.-.++++-+.=++ +-.-.+++.+|...-+.|.+-
T Consensus 338 ens~Elq-~Ig--------mkLn~LlgrKG~leklq~YWdV~~y~~------------asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 338 ENSLELQ-QIG--------MKLNSLLGRKGALEKLQEYWDVATYFE------------ASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred cchHHHH-HHH--------HHHHHHhhccchHHHHHHHHhHHHhhh------------hhhhccCHHHHHHHHHHHhcc
Confidence 2222111 110 112233456677666666655433221 233457788888887877664
No 440
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.17 E-value=46 Score=32.15 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=52.5
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 611 LIPQLEHYACIVDLLGRVGLLEGAKMTIDQM--PIPPDAHIWQS-LLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 611 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
..-|+..|...+.--.+.|.+.+...++.+. ..+.|+..|-. .-.-+...++++.+..++.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4445555555555555555566666666555 23445666644 33346678899999999999999999999888755
Q ss_pred HH
Q 041183 688 SN 689 (760)
Q Consensus 688 ~~ 689 (760)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 441
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.86 E-value=40 Score=25.60 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=25.7
Q ss_pred hccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCc
Q 041183 26 TKFADFRRAFRFLFDTQNRDIITYNALISGLARFCQS 62 (760)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 62 (760)
+...+.+.|.++++-++.+...+|..+..++-..|..
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 3445567777777777777777777777777666543
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.66 E-value=1.5e+02 Score=30.49 Aligned_cols=54 Identities=11% Similarity=-0.081 Sum_probs=41.7
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCChh--HHHHHHHHh--hhcCChHHHHHHHHhCC
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIPQLE--HYACIVDLL--GRVGLLEGAKMTIDQMP 642 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~ 642 (760)
..+...+++..|.++++.+.. . ++++.. .+..+..+| ...-++++|.+.++...
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~-r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLR-R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHH-h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345688999999999999998 3 666554 566666666 46778999999999874
No 443
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.88 E-value=2.9e+02 Score=25.97 Aligned_cols=80 Identities=10% Similarity=-0.062 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHHH
Q 041183 593 GLVREARTYLSCMSDLHGLIPQL-EHYACIVDLLGRVGLLEGAKMTIDQM-PIPPDAH-IWQSLLSACTIYGNIDLGLLA 669 (760)
Q Consensus 593 g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~A~~~ 669 (760)
..++.|...|.+... +.|+. .-|..=+-++.+..+++.+..-..+. .+.|+.. ....+.........+++|+..
T Consensus 24 k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344445554444443 44443 22333444444455555444333333 2333332 233333344455556666666
Q ss_pred HHHHhc
Q 041183 670 GSKLLE 675 (760)
Q Consensus 670 ~~~~~~ 675 (760)
+.++..
T Consensus 101 Lqra~s 106 (284)
T KOG4642|consen 101 LQRAYS 106 (284)
T ss_pred HHHHHH
Confidence 666644
No 444
>PHA02878 ankyrin repeat protein; Provisional
Probab=42.06 E-value=4.6e+02 Score=28.05 Aligned_cols=49 Identities=4% Similarity=-0.044 Sum_probs=22.5
Q ss_pred HHHhhccCChhHHHHhhhcCCCCC---cchHHHHHHHHHhcCCcchHHHHHHH
Q 041183 22 ISHFTKFADFRRAFRFLFDTQNRD---IITYNALISGLARFCQSGPALKLFDR 71 (760)
Q Consensus 22 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~ 71 (760)
+...++.|+.+-+..+++.-..++ ...+ +-+...+..|+.+.+..+++.
T Consensus 41 Lh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~-TpLh~A~~~g~~~~v~~Ll~~ 92 (477)
T PHA02878 41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDL-TPLHIICKEPNKLGMKEMIRS 92 (477)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCccHhHHHHHHHH
Confidence 344455666666655555443322 2222 233334455555544444443
No 445
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.82 E-value=5.4e+02 Score=28.72 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccC---CCCchhHH------HHHHHHHhcCChhHHHHHHHHHH
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQ---PDNESTYV------LLSNLYASAGMWNDVGKLRKEMK 708 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 708 (760)
+++..-.-.|+.++.......+..+. |+...... .+...+...|+.++|.....+..
T Consensus 539 ~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34444333677777666666666532 33333333 44455788899999988877654
No 446
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.56 E-value=65 Score=21.26 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHH
Q 041183 53 ISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKA 90 (760)
Q Consensus 53 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 90 (760)
+...-+.|-..++..+++.|.+.|+..+...|..+++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33445667777888888888888877777777766653
No 447
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.56 E-value=3e+02 Score=25.79 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=32.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041183 585 VLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTI 659 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 659 (760)
++.++...|+.+.|..+++.... ...+......++.. ...+.+.||..+.+....+-....+..++..+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44445555666666666555432 11122222222223 3445666666665555422223455555555543
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.94 E-value=29 Score=24.44 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=8.3
Q ss_pred HHHHHhccCcHHHHHHHHHHh
Q 041183 585 VLTSCCHAGLVREARTYLSCM 605 (760)
Q Consensus 585 l~~~~~~~g~~~~A~~~~~~~ 605 (760)
++.++...|++++|.++++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444433
No 449
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.85 E-value=93 Score=30.05 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=32.6
Q ss_pred HhccCcHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 589 CCHAGLVREARTYLSCMSDLHGLIPQ-LEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 589 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
..+.|+.++|..+|+.+.. +.|+ +.....+........++-+|-.++-++
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 4567888899999988876 4553 444444444444555666676666655
No 450
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.41 E-value=4e+02 Score=26.53 Aligned_cols=111 Identities=18% Similarity=-0.022 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhhcCC---CCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 041183 595 VREARTYLSCMSDLHGL---IPQLEHYACIVDLLGRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGS 671 (760)
Q Consensus 595 ~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 671 (760)
.+.|.+.|+........ ..++.....+.....+.|..++-..+++.....++...-..++.++....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888888772122 345666677777778888876666666666556778888889999988899998889999
Q ss_pred HHhccC-CCCchhHHHHHHHHHhcCCh--hHHHHHHHH
Q 041183 672 KLLELQ-PDNESTYVLLSNLYASAGMW--NDVGKLRKE 706 (760)
Q Consensus 672 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 706 (760)
.++.-+ -........+. .+...+.. +.+..++++
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHHHH
Confidence 888842 11333333333 33323333 555555444
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=7.5e+02 Score=29.44 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=10.5
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 041183 522 MYCKCGTIEDAKRAFRKI 539 (760)
Q Consensus 522 ~~~~~~~~~~A~~~~~~~ 539 (760)
+|...|...+|.+.|...
T Consensus 929 ~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eeecCCchHHHHHHHHHH
Confidence 355566666666666543
No 452
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.18 E-value=6.7e+02 Score=28.75 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=34.1
Q ss_pred HHHHhhccCChhHHHHhhhcCCCCCcc--hHHHHHHHHHhcCCcchHHHHHHHHH
Q 041183 21 LISHFTKFADFRRAFRFLFDTQNRDII--TYNALISGLARFCQSGPALKLFDRLR 73 (760)
Q Consensus 21 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~ 73 (760)
+=+.|...|+++.|++.-..- |+.. ++-.-...|.+.+++..|-+++-++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 446788899999998877554 2211 23333445667778888888887773
No 453
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.82 E-value=1.8e+02 Score=30.11 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 041183 636 MTIDQMPIPPDAH--IWQSLLSACTIYGNIDLGLLAGSKLLELQPDN 680 (760)
Q Consensus 636 ~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 680 (760)
.+|...+..|... ++.+-+..+.+.+++..|-.+.++++++.|..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3444444445433 56677778889999999999999999999843
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.80 E-value=72 Score=22.49 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 041183 548 NAMMMGYAQHGCYHEVSNLFNKMS 571 (760)
Q Consensus 548 ~~l~~~~~~~~~~~~a~~~~~~m~ 571 (760)
-.++.+|.+.|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334555555555555555555443
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.37 E-value=4.3e+02 Score=25.97 Aligned_cols=73 Identities=5% Similarity=0.083 Sum_probs=51.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhh----------cCChHH
Q 041183 564 SNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGR----------VGLLEG 633 (760)
Q Consensus 564 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 633 (760)
.++|+.+.+.+++|.-..|..+.-.+.+.=.+...+.+|+.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 358888888899999888888877788888889999999988762 2225555554443 456666
Q ss_pred HHHHHHhCC
Q 041183 634 AKMTIDQMP 642 (760)
Q Consensus 634 A~~~~~~~~ 642 (760)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 666666554
No 456
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.82 E-value=1.9e+02 Score=23.98 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHH
Q 041183 642 PIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLL 687 (760)
Q Consensus 642 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 687 (760)
..-|++.....-+++|.+.+|+..|.++++-+...-++....|-.+
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4678888888888888888888888888887776554344444433
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.23 E-value=5.1e+02 Score=26.58 Aligned_cols=61 Identities=10% Similarity=-0.040 Sum_probs=34.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---hhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041183 445 HINALASVLVYASCHAEALELYRTIWGSCREVN---GSTFSIVLKACAAMTDLEQGKAIHCLALK 506 (760)
Q Consensus 445 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 506 (760)
.+..+...|...|+.+.|++.|.+.++- +... ...|..+|..-.-.|+|..+..+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566677777777777777777775432 1111 12333444444555666666555555544
No 458
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=35.10 E-value=88 Score=19.46 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041183 682 STYVLLSNLYASAGMWNDVGKLRKEMKE 709 (760)
Q Consensus 682 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 709 (760)
.+|..|+.+-...+++++|..=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888888999888888877553
No 459
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=34.99 E-value=78 Score=32.80 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHhhh
Q 041183 553 GYAQHGCYHEVSNLFNKMSKFGVKPDEITYLAVL-TSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~ 607 (760)
.+.+.+.++.|..++.++++ +.||...|-..= .++.+.+++..|+.=+..+.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 34455566666666666666 556554443332 456666666666655555544
No 460
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.45 E-value=3.5e+02 Score=24.44 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFN 568 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~ 568 (760)
.|.....|.+.|..+.|+.+++
T Consensus 184 vn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 184 VNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHcCCchHHHHHHh
Confidence 4555566666666666666665
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.03 E-value=3.6e+02 Score=31.79 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhccC--cHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCC-CCCHHHHHH----
Q 041183 580 ITYLAVLTSCCHAG--LVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAKMTIDQMPI-PPDAHIWQS---- 652 (760)
Q Consensus 580 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~---- 652 (760)
.-+..++.+|.+.+ +++.|+.....+++. +...|.+.++.+.. .+-...|+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae~alkyl~fLvDvn~Ly~~ALG~ 871 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAEEALKYLCFLVDVNKLYDVALGT 871 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHHHHHhHheeeccHHHHHHHHhhh
Confidence 34455677787777 888888888888761 23333333443321 111122322
Q ss_pred ------HHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 041183 653 ------LLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEM 707 (760)
Q Consensus 653 ------l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 707 (760)
++-|-..+.|+.+-+-.+++..++.|. ..-..+-.+.|+|++|++.+-++
T Consensus 872 YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~-----~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 872 YDLELALMVAQQSQKDPKEYLPFLQELQKLPPL-----YRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHHHHhCChh-----heeeeHhhhhCCHHHHHHHHHhh
Confidence 233334567888888888888887662 13334566789999999887654
No 462
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.62 E-value=4.1e+02 Score=24.97 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=17.1
Q ss_pred hcCChhHHHHHHHHHhccCC
Q 041183 659 IYGNIDLGLLAGSKLLELQP 678 (760)
Q Consensus 659 ~~~~~~~A~~~~~~~~~~~p 678 (760)
..++...|+.+++++.+++|
T Consensus 190 d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 190 DAETLQLALALLQRAFQLND 209 (230)
T ss_pred CcccHHHHHHHHHHHHHhCC
Confidence 34577899999999999998
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.17 E-value=2.6e+02 Score=30.50 Aligned_cols=72 Identities=15% Similarity=0.298 Sum_probs=53.2
Q ss_pred HHHHHHHhcCChhhHHHHhhhcCCC---C---ceeHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCChhhHHHH
Q 041183 118 GFIENYAKSGEIVSAEMCFRDCLDL---D---NVAYTAMVCGYVWNGEFD------KSKEVFVEMRSLGLELNEFSLTAV 185 (760)
Q Consensus 118 ~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 185 (760)
+|+.+|...|++-.+.++++++... + ...||.-|..+.++|.++ .|.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7888899999999999999887652 2 236888888888999765 344444444 356788899988
Q ss_pred HHhccCc
Q 041183 186 LGASFDV 192 (760)
Q Consensus 186 l~~~~~~ 192 (760)
+++....
T Consensus 110 ~~~sln~ 116 (1117)
T COG5108 110 CQASLNP 116 (1117)
T ss_pred HHhhcCh
Confidence 8876654
No 464
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.83 E-value=64 Score=26.91 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=0.0
Q ss_pred hcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcC
Q 041183 354 ENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSN 389 (760)
Q Consensus 354 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 389 (760)
..|.-..|..+|.+|.+.|-+||. |+.|+..+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~~ 140 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAKQ 140 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhcC
No 465
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.56 E-value=4.4e+02 Score=24.96 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=49.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 041183 618 YACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYV 685 (760)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 685 (760)
+..+..++...|++-++++-..+.- .+.++.+|.--..+....=+..+|.+-+.++++++|.-..+..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 4455666777788888877777662 4456667777777777777889999999999999995444433
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.41 E-value=5.7e+02 Score=26.27 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 514 FVESAVIDMYCKCGTIEDAKRAFRKICR------DSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 514 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
..+.-+.+-|..+|+++.|.+.+.+... .-+..|-.+|..-.-.|+|..+..+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455667777778888888777766421 1223455555555556777777766666655
No 467
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.20 E-value=69 Score=31.09 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhH
Q 041183 345 WNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTM 380 (760)
Q Consensus 345 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 380 (760)
|+..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666666666666666655433333
No 468
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.74 E-value=7e+02 Score=27.05 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHh-ccCcHHHHHHHHHHhhh
Q 041183 551 MMGYAQHGCYHEVSNLFNKMSKFGVKP--DEITYLAVLTSCC-HAGLVREARTYLSCMSD 607 (760)
Q Consensus 551 ~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 607 (760)
|..+.+.|.+..|+++.+-+.+ +.| |......+|..|+ ++.++.-.+++++....
T Consensus 349 m~~l~~RGC~rTA~E~cKllls--Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLS--LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4455566666666666666665 344 3444555555442 45556666666555543
No 469
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.64 E-value=9.3e+02 Score=28.49 Aligned_cols=254 Identities=11% Similarity=-0.029 Sum_probs=127.7
Q ss_pred HHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCC
Q 041183 332 SIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLD 411 (760)
Q Consensus 332 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 411 (760)
.+...+..++..+-...+..+.+.+..+ +...+....+. ++...-...+.++...+........+..+.+. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 3444445566666666666666655433 43444444332 33333333333333322111111222222221 45
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHHhcc
Q 041183 412 DSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEALELYRTIWGSCREVNGSTFSIVLKACAAM 491 (760)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 491 (760)
..+-...+..+...+..+ ...+...+..+++..-...+.++.+.+..+. +.... -.++...=.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 555555555555433211 2234445555666555556666665544322 11121 133444444455555555
Q ss_pred CCHHH-HHHHHHHHHHcCCCCCchHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q 041183 492 TDLEQ-GKAIHCLALKARYDQDIFVESAVIDMYCKCGTIEDAK-RAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNK 569 (760)
Q Consensus 492 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 569 (760)
++.+. +...+..+.. .++..+-...+.++...|....+. .+...+..++...-...+.++...+. +++...+-.
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2233333332 356777777888888888765543 34445556666666667777777665 345555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhh
Q 041183 570 MSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSD 607 (760)
Q Consensus 570 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 607 (760)
+.+ .|+...-...+.++.+.+....+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 554 46666666667777665334566666666655
No 470
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.36 E-value=4.8e+02 Score=25.64 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----------cCChHHH
Q 041183 362 LDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGK----------CNALNES 431 (760)
Q Consensus 362 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A 431 (760)
.++++.|...++.|.-+.|..+.-.+.+.=.+..+..+|+.+.. |+.-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777788888888888888887777777788888888888764 33335566665553 3555555
Q ss_pred HHHHhhcC
Q 041183 432 KRVLSEID 439 (760)
Q Consensus 432 ~~~~~~~~ 439 (760)
.+++..-+
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 55554443
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.35 E-value=5.9e+02 Score=26.13 Aligned_cols=55 Identities=11% Similarity=-0.034 Sum_probs=33.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHh--ccCcHHHHHHHHHH
Q 041183 550 MMMGYAQHGCYHEVSNLFNKMSKFGVKPDEITY----LAVLTSCC--HAGLVREARTYLSC 604 (760)
Q Consensus 550 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~l~~~~~--~~g~~~~A~~~~~~ 604 (760)
.+..+.+.+++..|.++|+++......|+...+ ..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 344566778888888888888876555544332 23333332 34566677777764
No 472
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.20 E-value=1.6e+03 Score=31.00 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCchhHhHHHHhhhcCCChHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCccHHHHHHHHHH
Q 041183 308 MEVVSIGNALISMYGKCGQVNDARSIFDYLIFKDSVSWNSMIAGYSENGFFNQALDMFCHML 369 (760)
Q Consensus 308 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 369 (760)
.++.....++...|......|.-.-+|++- -...=+.....|...|.+++|..+|++..
T Consensus 2451 ~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr---~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2451 KGDESCLDSLAELYRSLNEEDMFYGLWRRR---AKFPETMVALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHh---hccHHHHHHHHHHHhhhHHHHhhHHHHHH
Confidence 345566667777776666666555555442 11122233445667788888888777654
No 473
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.01 E-value=75 Score=24.54 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=21.5
Q ss_pred ccCChhHHHHhhhcCCCCCcchHHHHHHHHHhcC
Q 041183 27 KFADFRRAFRFLFDTQNRDIITYNALISGLARFC 60 (760)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 60 (760)
.....+.+.++++-++.+...+|..+..++-..+
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3345566667776666666677777777665433
No 474
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.34 E-value=7e+02 Score=26.62 Aligned_cols=151 Identities=12% Similarity=0.068 Sum_probs=74.9
Q ss_pred hhHHHHhhccCChhHHHHhhhcCCCCCcc--hHHHHHHH-----HHhcCCcchHHHHHHHHHhCCCCCCc---ccHHHHH
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQNRDII--TYNALISG-----LARFCQSGPALKLFDRLRYQGLRPDA---FTFSSLV 88 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ll~~-----~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll 88 (760)
.+.+...++.|+.+-...+++.-..++.. ...+.+.. .+..++ .++.+.+.+.|..++. ...+.|.
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~----~~iv~~Ll~~ga~i~~~d~~g~tpL~ 111 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDV----KEIVKLLLEYGANVNAPDNNGITPLL 111 (480)
T ss_pred chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhch----HHHHHHHHHCCCCCCCCCCCCCchhh
Confidence 45566667777777777777665444332 11223333 333333 3344455556654433 2344444
Q ss_pred HHhcCCCchhHHHHHHHHhcCCCCch--hhhHHHHHHHhcC--ChhhHHHHhhhcCCC---CceeHHHHHHHHHhcCChh
Q 041183 89 KACGSLQENEIVHGVCLKLGFSSRVY--LVSGFIENYAKSG--EIVSAEMCFRDCLDL---DNVAYTAMVCGYVWNGEFD 161 (760)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 161 (760)
.++.......++.+.+.+.|..++.. .....+...+..| +.+-+..+++..... +...+ +.+...+..|+.+
T Consensus 112 ~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~-tpL~~A~~~~~~~ 190 (480)
T PHA03100 112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGY-TPLHIAVEKGNID 190 (480)
T ss_pred HHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCC-CHHHHHHHhCCHH
Confidence 44431222235666667777665432 2234555566666 666666666654442 22222 3344455556443
Q ss_pred HHHHHHHHHHHCCCCCC
Q 041183 162 KSKEVFVEMRSLGLELN 178 (760)
Q Consensus 162 ~A~~~~~~m~~~g~~p~ 178 (760)
+++.+.+.|..|+
T Consensus 191 ----iv~~Ll~~ga~~~ 203 (480)
T PHA03100 191 ----VIKFLLDNGADIN 203 (480)
T ss_pred ----HHHHHHHcCCCcc
Confidence 3444445565544
No 475
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.30 E-value=4.7e+02 Score=24.60 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=28.2
Q ss_pred cCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 041183 539 ICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSKFGVKPDE 579 (760)
Q Consensus 539 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 579 (760)
..+|.+.....++..|. .+++++|.+++.++.+.|..|..
T Consensus 234 ~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 234 CDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred cCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 34566666666666554 46788888888888888887754
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.27 E-value=5.1e+02 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHh
Q 041183 511 QDIFVESAVIDMYCKCGTIEDAKRAFRK 538 (760)
Q Consensus 511 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 538 (760)
-++.....+...|.+.|++.+|+..|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3567778888888899988888877643
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.81 E-value=1.8e+02 Score=26.01 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCh
Q 041183 652 SLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMW 697 (760)
Q Consensus 652 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 697 (760)
..+..|.+.|.+++|.+++++... +|++...-..|..+-.+.+.+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 346679999999999999999999 886666644444444443333
No 478
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.78 E-value=1.7e+02 Score=22.02 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHhcCChhhHHHHhhhcCCCCc---eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 041183 119 FIENYAKSGEIVSAEMCFRDCLDLDN---VAYTAMVCGYVWNGEFDKSKEVFVEMRSLGLELN 178 (760)
Q Consensus 119 li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 178 (760)
.+...+..|+.+-+..+++.-.+++. ..++.+.. .+..|+ .++++.+.+.|..++
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~----~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHY-AAENGN----LEIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH----HHHHHHHHHTTT-TT
T ss_pred HHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHH-HHHcCC----HHHHHHHHHcCCCCC
Confidence 44445566666666666665444332 23333333 344444 335555666666554
No 479
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.71 E-value=7.1e+02 Score=26.49 Aligned_cols=90 Identities=9% Similarity=-0.006 Sum_probs=55.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 041183 619 ACIVDLLGRVGLLEGAKMTIDQMP--IPPDAHIWQSLLSAC--TIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASA 694 (760)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 694 (760)
+.+++-+.+.|-..+|...+.... -+|+...|..++..- ....+...+..+|+.|..-.-.++..|......-...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 456666677777777777777663 355666666665542 2233466677777777764335666666666555566
Q ss_pred CChhHHHHHHHHHH
Q 041183 695 GMWNDVGKLRKEMK 708 (760)
Q Consensus 695 g~~~~A~~~~~~~~ 708 (760)
|+.+.+-.++.+..
T Consensus 544 g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 544 GRPENCGQIYWRAM 557 (568)
T ss_pred CCcccccHHHHHHH
Confidence 77766666655543
No 480
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.48 E-value=2.1e+02 Score=22.40 Aligned_cols=33 Identities=12% Similarity=-0.067 Sum_probs=18.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCchhHH
Q 041183 653 LLSACTIYGNIDLGLLAGSKLLELQPDNESTYV 685 (760)
Q Consensus 653 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 685 (760)
|.-.|.+.|+.+.|.+-|+.=..+.|++.....
T Consensus 78 LGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 333455666666666666666666664444333
No 481
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.19 E-value=5.8e+02 Score=25.34 Aligned_cols=59 Identities=8% Similarity=-0.031 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q 041183 346 NSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSG 407 (760)
Q Consensus 346 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 407 (760)
..++...++.|+.+.-..+++.... .++......++.+++...+.+...++++.+...+
T Consensus 173 ~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 173 WAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCc
Confidence 3344444455554443333333332 2345555666666666667666666666666643
No 482
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.80 E-value=4.4e+02 Score=23.85 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 041183 549 AMMMGYAQHGCYHEVSNLFNKMSKFGV--------------KPDEITYLAVLTSCCHAGLVREARTYLS 603 (760)
Q Consensus 549 ~l~~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 603 (760)
+++-.|-+..++.+..++++.|.+..+ .|.....|.....|.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345556666677777777776655321 2223444555555666666666666655
No 483
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=28.36 E-value=6.6e+02 Score=25.70 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=73.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC---CC----Cchh
Q 041183 619 ACIVDLLGRVGLLEGAKMTIDQMPIPP--------DAHIWQSLLSACTIYGNIDLGLLAGSKLLELQ---PD----NEST 683 (760)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~----~~~~ 683 (760)
..|...+-..|+.++|..++.+.+.+. -+....--++.|...+|+-.|.-+-+++.... |+ -...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 446677788999999999998885111 11122233567888899999988888887632 32 1336
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEE
Q 041183 684 YVLLSNLYASAGMWNDVGKLRKEMKEKFLCKEPGYSWIHVGGYT 727 (760)
Q Consensus 684 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (760)
|..+.....+.+.+=++-+.++..-+.|--+....-|..+--.+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 77778888888999899999998887665555443455444333
No 484
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=28.24 E-value=3.2e+02 Score=22.10 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHH
Q 041183 665 LGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRK 705 (760)
Q Consensus 665 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 705 (760)
.+.+.+.++..+.|+.+..++.++.-+....-|+++..--+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666777777777776666666665555555555554444
No 485
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.83 E-value=79 Score=35.40 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=28.1
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 041183 626 GRVGLLEGAKMTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLE 675 (760)
Q Consensus 626 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 675 (760)
..+|+++.|++.-+++. +..+|..|+......|+.+-|+..|++...
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34566666666555543 455666666666666666666666665443
No 486
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.80 E-value=2.2e+02 Score=25.24 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=28.4
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCCh
Q 041183 571 SKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLL 631 (760)
Q Consensus 571 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 631 (760)
.+.|++++..-. .++..+...+..-.|.++++.+.+ .+..++..|...-+..+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCE
Confidence 344555443322 223333333445556666666655 34444555544555555555543
No 487
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.47 E-value=5.1e+02 Score=25.46 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=23.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 041183 520 IDMYCKCGTIEDAKRAFRKICRDSLAGWNAMMMGYAQHGCYHEVSNLFNKMSK 572 (760)
Q Consensus 520 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 572 (760)
+..+.+.+++.+..+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333444444444444443331 122223344555566666666666665554
No 488
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.36 E-value=2e+02 Score=31.17 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 650 WQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 650 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
...+--.|.+..+.+.|.++++++.+.+|.++-.-.....+....|+-++|+..+......-
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 44444555666677777777777777777676666666677777777777776666655433
No 489
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.35 E-value=4.8e+02 Score=24.37 Aligned_cols=91 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 041183 547 WNAMMMGYAQHGCYHEVSNLFNKMSKFGVKP-----DEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACI 621 (760)
Q Consensus 547 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 621 (760)
+|.|+--|.-...+.+|.+.|. .+.|+.| +...=..-|......|+.+.|.+....+.. .-+.-|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccchhHHHHH
Q ss_pred HHHh----hhcCChHHHHHHHHh
Q 041183 622 VDLL----GRVGLLEGAKMTIDQ 640 (760)
Q Consensus 622 ~~~~----~~~g~~~~A~~~~~~ 640 (760)
...- .+.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 490
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.33 E-value=2.5e+02 Score=24.07 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 041183 364 MFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHIIKSGFLLDDSMISCLITTYGKCNA 427 (760)
Q Consensus 364 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (760)
+.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4445556666655443 24556666666667788888888887777666655555566655553
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.28 E-value=1.7e+02 Score=27.97 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=8.2
Q ss_pred HHhccCcHHHHHHHHHHh
Q 041183 588 SCCHAGLVREARTYLSCM 605 (760)
Q Consensus 588 ~~~~~g~~~~A~~~~~~~ 605 (760)
-|.+.|+++.|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444444
No 492
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.18 E-value=3.2e+02 Score=31.02 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=71.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcCChHHHH
Q 041183 556 QHGCYHEVSNLFNKMSKFGVKPDEITYLAVLTSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVGLLEGAK 635 (760)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 635 (760)
..|+.+.|++.-.++ -+..++..|...-...|+.+-|+..|+..+. |..|-..|.-.|+.++-.
T Consensus 655 e~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHH
Confidence 456666666544332 2445667777777777777777777776665 444455566667777766
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041183 636 MTIDQMPIPPDAHIWQSLLSACTIYGNIDLGLLAGSKLLELQPDNESTYVLLSNLYASAGMWNDVGKLRKEMKEKF 711 (760)
Q Consensus 636 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 711 (760)
++.+.++...|..+.. ....-.|++++-..+++..-.+ +.+|. .-...|.-++|.++.++..++.
T Consensus 719 Km~~iae~r~D~~~~~---qnalYl~dv~ervkIl~n~g~~----~layl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 719 KMMKIAEIRNDATGQF---QNALYLGDVKERVKILENGGQL----PLAYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHHhhhhhHHHH---HHHHHhccHHHHHHHHHhcCcc----cHHHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 6666554444433221 1122346666655555543322 12222 2234577777777777776644
No 493
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.42 E-value=2.5e+02 Score=30.63 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=26.1
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHc--CCCCchhHhHHHHhhhcCCCh
Q 041183 281 NLLSSVGGERILRAGKQIQAFCYKVG--FMEVVSIGNALISMYGKCGQV 327 (760)
Q Consensus 281 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~ 327 (760)
+++.+|...|++..+.++++.+..+. -+.=...+|..|.-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 66667777777777776666665442 222223445555555555543
No 494
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.37 E-value=1.8e+02 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=12.0
Q ss_pred HHHHHhhhcCChHHHHHHHHhC
Q 041183 620 CIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555555544
No 495
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.33 E-value=3.1e+02 Score=23.56 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=17.8
Q ss_pred HHHhccCcHHHHHHHHHHhhhhcCCCCChhHHHHHHHHhhhcC
Q 041183 587 TSCCHAGLVREARTYLSCMSDLHGLIPQLEHYACIVDLLGRVG 629 (760)
Q Consensus 587 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 629 (760)
..+...++.-.|.++++.+.+ .+...+..|...-++.+...|
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 28 ELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCC
Confidence 333344444445555555544 233333333333444444444
No 496
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.22 E-value=1.1e+02 Score=24.71 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=0.0
Q ss_pred hhHHHHhhccCChhHHHHhhhcCCCCCcc----hHHHHHHHHHh-cCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcC
Q 041183 19 TTLISHFTKFADFRRAFRFLFDTQNRDII----TYNALISGLAR-FCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGS 93 (760)
Q Consensus 19 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ll~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 93 (760)
..++..|...|+.++|.+.+.++..| .. .+..+-.++-+ ...-+.+..++..+...+.-+....-..+-..+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred CCchh-----------HHHHHHHHhcCCC
Q 041183 94 LQENE-----------IVHGVCLKLGFSS 111 (760)
Q Consensus 94 ~~~~~-----------~~~~~~~~~~~~~ 111 (760)
..+.. +++..+...|+-|
T Consensus 85 l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 85 LEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred hhhccccchHHHHHHHHHHHHHHHcCCcC
No 497
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.08 E-value=3.9e+02 Score=22.26 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 041183 562 EVSNLFNKMSKFGVKPD-EITYLAVLTSCCHAGLVREARTYLSC 604 (760)
Q Consensus 562 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 604 (760)
.+.++|+.|..+|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666665443 34455555556666666666666654
No 498
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=25.94 E-value=3.9e+02 Score=22.29 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred cCChhHHHHhhhcCCCCCcchHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCcccHHHHHHHhcCCCchh---------
Q 041183 28 FADFRRAFRFLFDTQNRDIITYNALISGLARFCQSGPALKLFDRLRYQGLRPDAFTFSSLVKACGSLQENE--------- 98 (760)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------- 98 (760)
..++.=|.+++..+...+ .+...++.+.+-.-.-.++++...+....-.|....-.-+-++.....+..
T Consensus 2 enNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~V 79 (126)
T PF10155_consen 2 ENNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLV 79 (126)
T ss_pred CCcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchh
Q ss_pred ----HHHHHHHHhcCCCCchhhhHHHHHHHhcCChhhHHHHhhhcCC
Q 041183 99 ----IVHGVCLKLGFSSRVYLVSGFIENYAKSGEIVSAEMCFRDCLD 141 (760)
Q Consensus 99 ----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 141 (760)
..++.+.+.++......+.-+-..|.+--+..+|-.+|+.+.+
T Consensus 80 Rlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk~ 126 (126)
T PF10155_consen 80 RLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLKN 126 (126)
T ss_pred hhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHhC
No 499
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.83 E-value=3e+02 Score=28.47 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=27.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhhhc-----CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041183 584 AVLTSCCHAGLVREARTYLSCMSDLH-----GLIP-QLEHYACIVDLLGRVGLLEGAKMTIDQM 641 (760)
Q Consensus 584 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 641 (760)
.|++..+-.||+..|+++++.+.-.. .+++ .+.++-.++-+|.-.+++.+|.+.|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555442210 1111 2344555555555666666666555543
No 500
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.87 E-value=6.7e+02 Score=24.64 Aligned_cols=276 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHHhccCccchhhHHHHHHhhccCCCcchhHHHHHHHHhHhcCCHHHHHHHhccCCCCCcchHHHHHHh
Q 041183 174 GLELNEFSLTAVLGASFDVKEGEQIHGFGVKVGFLSGVCNHLNNAIMNLYVRCGQKLDAVKMFDEITEPDVVSWSERIAA 253 (760)
Q Consensus 174 g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 253 (760)
...|+..|. .+...+++.+|+-| ..++++-+....-+-..+.+
T Consensus 99 da~e~~E~i---------------------------~~~~qvf~KliRRy----------kyLeK~fE~e~~k~Llflk~ 141 (412)
T KOG2297|consen 99 DAEEKREAI---------------------------RNSVQVFQKLIRRY----------KYLEKNFENEMRKFLLFLKL 141 (412)
T ss_pred ecCchHHHH---------------------------HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHc
Q ss_pred hc-ChhHHHHHHHHHhhCCccCCcchHHHHHHhhcCCCcchHHHHHHHHHHHHcCCCCchhHhHHHHhhhcCCChHHHHH
Q 041183 254 AC-DGVEAFGLFKDLRFNDFQINEYTMINLLSSVGGERILRAGKQIQAFCYKVGFMEVVSIGNALISMYGKCGQVNDARS 332 (760)
Q Consensus 254 ~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 332 (760)
+. +-..-+.++..+.-.+-.|+...++.++. +.+++.|+..+.. ..+...+....+++....
T Consensus 142 F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~---------------d~LVkeGi~l~F~--~~lFk~~~~Ek~i~~lis 204 (412)
T KOG2297|consen 142 FEENERKKLAMLTALLLSNGTLPATVLQSLLN---------------DNLVKEGIALSFA--VKLFKEWLVEKDINDLIS 204 (412)
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---------------hhHHHHhHHHHHH--HHHHHHHHhhccHHHHHH
Q ss_pred HHhcC---------CCCCeeeHHHHHHHHHhcCCccHHHHHHHHHHHCCCCCCHhhHHHHHHHhcCcCCHHHHHHHHHHH
Q 041183 333 IFDYL---------IFKDSVSWNSMIAGYSENGFFNQALDMFCHMLEFSLIPNGYTMASILEAVSNSKSLKQAMQVHSHI 403 (760)
Q Consensus 333 ~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 403 (760)
.+++. .+|+..+-......+...|--+-..-.=.++... .-...-..|..-..+...+++......+-
T Consensus 205 ~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee 281 (412)
T KOG2297|consen 205 SLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEE 281 (412)
T ss_pred HHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcccHHHHHHHHHhcCChhHHH---------------HHHHH
Q 041183 404 IKSGFLLDDSMISCLITTYGKCNALNESKRVLSEIDKKNAVHINALASVLVYASCHAEAL---------------ELYRT 468 (760)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---------------~~~~~ 468 (760)
.+..--|++.+...+-++......|.+-.++..+-.-+....|..|+.+++..|+.+-.+ +.|.+
T Consensus 282 ~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqk 361 (412)
T KOG2297|consen 282 MKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQK 361 (412)
T ss_pred HHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHhCCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041183 469 IWGSCREVNGSTFSIVLKACAAMTDLEQGKAIHCLALK 506 (760)
Q Consensus 469 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 506 (760)
+...=.+.++-+=..++.-|-.......-.-+++.|..
T Consensus 362 iV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 362 IVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
Done!